Query 004149
Match_columns 771
No_of_seqs 591 out of 4424
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 18:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 3.1E-48 6.8E-53 436.2 54.6 608 33-771 8-618 (620)
2 PRK10115 protease 2; Provision 100.0 1E-41 2.3E-46 384.7 57.9 527 101-770 129-676 (686)
3 KOG2100 Dipeptidyl aminopeptid 100.0 4.4E-34 9.6E-39 322.7 52.0 613 48-770 103-748 (755)
4 KOG2281 Dipeptidyl aminopeptid 100.0 2.4E-31 5.1E-36 273.0 37.2 339 401-768 516-866 (867)
5 PRK01029 tolB translocation pr 100.0 2.3E-28 5E-33 263.2 29.8 286 28-444 132-426 (428)
6 PF00326 Peptidase_S9: Prolyl 100.0 4.7E-30 1E-34 252.4 15.0 206 554-771 2-211 (213)
7 COG1505 Serine proteases of th 100.0 4.1E-26 8.9E-31 235.7 37.2 345 392-771 300-648 (648)
8 PRK03629 tolB translocation pr 100.0 1.7E-26 3.6E-31 250.1 31.1 280 26-442 147-427 (429)
9 COG1770 PtrB Protease II [Amin 100.0 3.3E-24 7.2E-29 224.8 42.8 536 105-750 80-658 (682)
10 PRK05137 tolB translocation pr 99.9 2.5E-25 5.5E-30 242.7 31.4 279 27-442 150-432 (435)
11 PRK04792 tolB translocation pr 99.9 6.4E-25 1.4E-29 238.6 30.8 279 27-442 167-446 (448)
12 PRK04922 tolB translocation pr 99.9 1.1E-24 2.4E-29 237.3 30.5 281 26-442 151-432 (433)
13 PRK02889 tolB translocation pr 99.9 1.4E-24 3.1E-29 235.4 30.4 278 25-442 146-424 (427)
14 PRK04043 tolB translocation pr 99.9 1.5E-24 3.3E-29 231.7 29.3 255 55-433 156-412 (419)
15 PRK00178 tolB translocation pr 99.9 5.9E-24 1.3E-28 232.6 31.4 281 26-442 146-427 (430)
16 KOG2237 Predicted serine prote 99.9 2.5E-22 5.5E-27 208.6 40.0 302 442-770 391-706 (712)
17 PRK01742 tolB translocation pr 99.9 8.1E-23 1.8E-27 222.1 30.0 273 26-442 152-425 (429)
18 PRK05137 tolB translocation pr 99.9 6.8E-23 1.5E-27 223.6 27.4 245 109-468 164-414 (435)
19 PRK04043 tolB translocation pr 99.9 1.2E-22 2.7E-27 217.0 27.3 239 111-468 155-402 (419)
20 PRK01029 tolB translocation pr 99.9 1.2E-22 2.6E-27 219.0 26.6 251 104-468 142-405 (428)
21 PRK03629 tolB translocation pr 99.9 5.8E-22 1.3E-26 214.7 27.6 241 111-467 164-407 (429)
22 PRK02889 tolB translocation pr 99.9 9.7E-22 2.1E-26 213.4 27.3 239 111-466 164-403 (427)
23 PRK04792 tolB translocation pr 99.9 2.8E-21 6E-26 210.2 28.0 241 110-466 182-425 (448)
24 PRK13604 luxD acyl transferase 99.9 2.8E-21 6E-26 192.1 22.3 223 514-750 15-246 (307)
25 PRK04922 tolB translocation pr 99.9 6.5E-21 1.4E-25 207.7 27.3 243 109-467 166-412 (433)
26 PRK00178 tolB translocation pr 99.9 7.2E-21 1.6E-25 208.2 27.7 242 109-466 161-406 (430)
27 TIGR02800 propeller_TolB tol-p 99.9 4.2E-20 9E-25 202.2 30.9 254 53-433 155-409 (417)
28 PF00930 DPPIV_N: Dipeptidyl p 99.9 3.9E-21 8.4E-26 203.3 21.1 329 50-458 1-353 (353)
29 PRK10566 esterase; Provisional 99.9 5.9E-21 1.3E-25 193.2 21.5 231 521-770 12-249 (249)
30 KOG1455 Lysophospholipase [Lip 99.9 4.3E-21 9.3E-26 184.0 18.3 250 512-769 31-312 (313)
31 PLN02298 hydrolase, alpha/beta 99.9 1.6E-20 3.5E-25 198.2 23.4 246 513-770 37-318 (330)
32 PHA02857 monoglyceride lipase; 99.9 7.1E-21 1.5E-25 195.8 19.9 243 513-770 5-274 (276)
33 COG0823 TolB Periplasmic compo 99.9 2.4E-20 5.3E-25 197.3 24.2 270 25-430 140-411 (425)
34 PLN02385 hydrolase; alpha/beta 99.9 2E-20 4.3E-25 198.6 22.3 249 513-770 66-346 (349)
35 PRK01742 tolB translocation pr 99.8 2.9E-19 6.2E-24 194.4 26.2 232 110-464 168-402 (429)
36 PLN02442 S-formylglutathione h 99.8 1E-19 2.3E-24 185.7 20.6 233 517-771 28-282 (283)
37 PRK10749 lysophospholipase L2; 99.8 6.4E-19 1.4E-23 185.2 25.0 248 512-769 34-329 (330)
38 PRK05077 frsA fermentation/res 99.8 2.4E-19 5.1E-24 192.0 21.8 232 515-771 175-414 (414)
39 PF01738 DLH: Dienelactone hyd 99.8 5.1E-20 1.1E-24 181.6 15.2 204 521-770 1-218 (218)
40 TIGR02800 propeller_TolB tol-p 99.8 1.2E-18 2.6E-23 190.7 27.4 243 107-465 152-396 (417)
41 TIGR02821 fghA_ester_D S-formy 99.8 1.4E-18 3.1E-23 177.2 21.9 231 517-770 23-275 (275)
42 COG1647 Esterase/lipase [Gener 99.8 2.6E-19 5.6E-24 162.9 13.6 211 537-767 15-242 (243)
43 PLN02652 hydrolase; alpha/beta 99.8 1.2E-18 2.5E-23 185.0 20.7 245 513-770 115-388 (395)
44 PRK10162 acetyl esterase; Prov 99.8 7.9E-18 1.7E-22 175.0 24.4 221 520-771 68-317 (318)
45 COG0823 TolB Periplasmic compo 99.8 5.2E-18 1.1E-22 179.7 22.5 206 156-466 196-402 (425)
46 COG2267 PldB Lysophospholipase 99.8 4.4E-18 9.6E-23 173.5 20.1 245 512-770 13-295 (298)
47 COG0412 Dienelactone hydrolase 99.8 7.5E-18 1.6E-22 165.4 20.5 207 518-771 11-235 (236)
48 KOG1552 Predicted alpha/beta h 99.8 5.8E-18 1.3E-22 159.6 16.4 210 515-770 42-253 (258)
49 PF05448 AXE1: Acetyl xylan es 99.8 6.4E-18 1.4E-22 173.0 17.4 241 512-769 60-320 (320)
50 PRK05371 x-prolyl-dipeptidyl a 99.8 6E-17 1.3E-21 184.7 26.3 265 501-771 170-521 (767)
51 PRK11460 putative hydrolase; P 99.8 6.4E-17 1.4E-21 160.0 21.2 186 534-770 13-209 (232)
52 PRK00870 haloalkane dehalogena 99.7 1.3E-16 2.9E-21 166.1 22.0 220 537-769 46-301 (302)
53 COG0657 Aes Esterase/lipase [L 99.7 5.6E-17 1.2E-21 169.3 17.1 233 518-770 61-311 (312)
54 TIGR01840 esterase_phb esteras 99.7 9.6E-17 2.1E-21 157.2 17.1 192 523-733 1-197 (212)
55 KOG4391 Predicted alpha/beta h 99.7 3.3E-17 7.1E-22 147.5 12.1 224 512-769 58-282 (300)
56 COG3458 Acetyl esterase (deace 99.7 7.4E-17 1.6E-21 151.0 14.1 240 511-768 59-316 (321)
57 KOG1515 Arylacetamide deacetyl 99.7 2.2E-16 4.7E-21 160.3 18.6 231 520-769 73-335 (336)
58 PLN02511 hydrolase 99.7 1.9E-16 4.2E-21 169.2 19.2 243 516-770 79-366 (388)
59 TIGR03343 biphenyl_bphD 2-hydr 99.7 1.9E-16 4E-21 163.6 17.9 217 537-767 30-281 (282)
60 TIGR01607 PST-A Plasmodium sub 99.7 4.5E-16 9.8E-21 162.9 20.3 245 514-767 3-331 (332)
61 PRK10985 putative hydrolase; P 99.7 5.6E-16 1.2E-20 162.4 20.2 225 534-770 55-321 (324)
62 TIGR02240 PHA_depoly_arom poly 99.7 7.4E-16 1.6E-20 158.3 19.5 229 517-769 10-266 (276)
63 PLN02824 hydrolase, alpha/beta 99.7 3.5E-16 7.7E-21 162.4 17.2 219 538-769 30-294 (294)
64 TIGR03611 RutD pyrimidine util 99.7 4.6E-16 1E-20 158.1 17.3 216 535-767 11-256 (257)
65 KOG4178 Soluble epoxide hydrol 99.7 1.8E-15 3.9E-20 148.4 20.2 224 533-770 40-321 (322)
66 PLN02965 Probable pheophorbida 99.7 1.4E-15 3.1E-20 154.1 20.5 215 539-769 5-253 (255)
67 COG4946 Uncharacterized protei 99.7 7E-15 1.5E-19 146.7 23.5 334 45-459 44-515 (668)
68 PRK03592 haloalkane dehalogena 99.7 4.2E-15 9.1E-20 154.4 22.8 216 537-769 27-289 (295)
69 PRK10673 acyl-CoA esterase; Pr 99.7 1.4E-15 3.1E-20 154.5 18.8 216 533-768 12-254 (255)
70 TIGR00976 /NonD putative hydro 99.7 2.2E-15 4.9E-20 168.9 21.8 130 516-654 4-135 (550)
71 PF12695 Abhydrolase_5: Alpha/ 99.7 1.1E-15 2.3E-20 140.5 15.7 145 539-748 1-145 (145)
72 KOG0271 Notchless-like WD40 re 99.7 9.3E-15 2E-19 142.1 21.1 303 92-448 109-467 (480)
73 PLN02679 hydrolase, alpha/beta 99.7 7.1E-15 1.5E-19 156.2 21.7 219 537-768 88-356 (360)
74 TIGR02427 protocat_pcaD 3-oxoa 99.7 1E-15 2.2E-20 154.8 14.4 213 536-766 12-250 (251)
75 PF07859 Abhydrolase_3: alpha/ 99.7 5.1E-16 1.1E-20 152.6 11.5 189 540-750 1-210 (211)
76 PLN03087 BODYGUARD 1 domain co 99.7 5.6E-15 1.2E-19 158.7 20.4 237 514-768 181-478 (481)
77 TIGR03100 hydr1_PEP hydrolase, 99.6 1.5E-15 3.3E-20 154.9 14.3 238 516-768 9-274 (274)
78 TIGR03056 bchO_mg_che_rel puta 99.6 5.3E-15 1.1E-19 152.4 18.4 215 536-767 27-278 (278)
79 PF02129 Peptidase_S15: X-Pro 99.6 1E-15 2.2E-20 156.1 11.8 222 517-748 1-271 (272)
80 COG0429 Predicted hydrolase of 99.6 2E-14 4.3E-19 140.5 19.7 241 516-770 57-341 (345)
81 PF02230 Abhydrolase_2: Phosph 99.6 5.9E-15 1.3E-19 144.9 16.2 191 533-770 10-216 (216)
82 PRK11071 esterase YqiA; Provis 99.6 1.4E-14 3E-19 138.2 17.7 183 538-767 2-189 (190)
83 PLN02894 hydrolase, alpha/beta 99.6 2.4E-14 5.3E-19 153.6 21.2 222 535-771 103-387 (402)
84 PF00930 DPPIV_N: Dipeptidyl p 99.6 3E-14 6.5E-19 150.9 21.2 262 107-466 1-315 (353)
85 TIGR01250 pro_imino_pep_2 prol 99.6 1.5E-14 3.2E-19 149.7 18.5 218 536-767 24-288 (288)
86 PF06500 DUF1100: Alpha/beta h 99.6 1E-14 2.2E-19 149.6 16.8 224 518-770 174-410 (411)
87 TIGR03695 menH_SHCHC 2-succiny 99.6 2.2E-14 4.8E-19 144.8 18.9 212 538-766 2-250 (251)
88 TIGR01738 bioH putative pimelo 99.6 5.7E-15 1.2E-19 148.7 13.2 207 537-766 4-245 (245)
89 PRK03204 haloalkane dehalogena 99.6 3.5E-14 7.7E-19 146.1 17.9 210 537-766 34-285 (286)
90 PRK06489 hypothetical protein; 99.6 1.6E-14 3.5E-19 153.8 15.9 221 537-770 69-358 (360)
91 COG2945 Predicted hydrolase of 99.6 4.2E-14 9.1E-19 126.2 15.4 193 515-767 10-205 (210)
92 PLN00021 chlorophyllase 99.6 1.1E-13 2.4E-18 141.9 20.8 182 519-749 37-241 (313)
93 TIGR01392 homoserO_Ac_trn homo 99.6 3.4E-14 7.3E-19 151.0 17.4 245 517-767 14-351 (351)
94 PRK07581 hypothetical protein; 99.6 1.7E-14 3.7E-19 152.8 15.1 224 536-770 40-337 (339)
95 PRK10349 carboxylesterase BioH 99.6 2.6E-14 5.6E-19 145.2 15.3 206 538-766 14-253 (256)
96 PF12697 Abhydrolase_6: Alpha/ 99.6 6.8E-15 1.5E-19 146.1 10.8 196 540-750 1-218 (228)
97 TIGR01249 pro_imino_pep_1 prol 99.6 9.8E-14 2.1E-18 144.5 19.6 229 517-770 13-306 (306)
98 PLN02872 triacylglycerol lipas 99.6 3E-14 6.6E-19 150.5 15.8 257 505-771 43-391 (395)
99 PLN02578 hydrolase 99.6 8.3E-14 1.8E-18 147.9 18.5 210 538-767 87-353 (354)
100 PRK14875 acetoin dehydrogenase 99.6 4.4E-14 9.5E-19 152.2 16.5 213 535-768 129-370 (371)
101 KOG4667 Predicted esterase [Li 99.6 6.6E-14 1.4E-18 126.6 14.6 209 535-755 31-246 (269)
102 PF10503 Esterase_phd: Esteras 99.6 5.4E-14 1.2E-18 134.7 14.8 193 522-733 2-198 (220)
103 COG0400 Predicted esterase [Ge 99.6 1.7E-13 3.6E-18 129.8 17.8 188 533-770 14-206 (207)
104 COG4099 Predicted peptidase [G 99.6 2.9E-14 6.3E-19 135.1 12.0 177 515-743 168-354 (387)
105 TIGR01836 PHA_synth_III_C poly 99.6 9E-14 1.9E-18 147.5 17.5 236 521-769 48-350 (350)
106 PRK00175 metX homoserine O-ace 99.6 1.1E-13 2.4E-18 148.1 18.1 246 518-769 32-374 (379)
107 PF14583 Pectate_lyase22: Olig 99.6 1E-13 2.2E-18 140.3 16.6 314 82-466 19-383 (386)
108 TIGR03101 hydr2_PEP hydrolase, 99.5 9.6E-13 2.1E-17 131.1 23.0 220 515-745 6-243 (266)
109 KOG4409 Predicted hydrolase/ac 99.5 2.3E-13 4.9E-18 133.8 17.9 221 535-768 88-363 (365)
110 PLN03084 alpha/beta hydrolase 99.5 4.7E-13 1E-17 141.3 20.3 217 536-767 126-382 (383)
111 PRK11126 2-succinyl-6-hydroxy- 99.5 3E-13 6.4E-18 136.2 18.0 206 537-768 2-241 (242)
112 PLN02211 methyl indole-3-aceta 99.5 5.2E-13 1.1E-17 136.0 19.2 215 535-766 16-267 (273)
113 PF12715 Abhydrolase_7: Abhydr 99.5 6.2E-14 1.3E-18 141.1 10.2 137 512-651 92-260 (390)
114 KOG1838 Alpha/beta hydrolase [ 99.5 2.5E-12 5.4E-17 131.1 21.1 243 516-769 101-388 (409)
115 PF08840 BAAT_C: BAAT / Acyl-C 99.5 3.3E-13 7.2E-18 130.9 12.4 174 597-771 3-212 (213)
116 KOG3043 Predicted hydrolase re 99.5 8.8E-13 1.9E-17 120.9 14.0 199 521-771 28-242 (242)
117 KOG1454 Predicted hydrolase/ac 99.5 5.8E-13 1.3E-17 137.4 14.3 220 535-770 56-325 (326)
118 PRK08775 homoserine O-acetyltr 99.4 1.4E-12 3E-17 138.1 15.6 198 555-768 85-338 (343)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.5E-10 3.3E-15 120.5 30.1 247 101-468 33-281 (300)
120 PRK06765 homoserine O-acetyltr 99.4 6.6E-12 1.4E-16 133.0 16.1 243 520-768 42-387 (389)
121 KOG0271 Notchless-like WD40 re 99.4 4.9E-12 1.1E-16 123.5 13.6 126 212-404 340-467 (480)
122 PLN02980 2-oxoglutarate decarb 99.4 8.4E-12 1.8E-16 155.0 18.6 224 536-769 1370-1639(1655)
123 COG3509 LpqC Poly(3-hydroxybut 99.4 3.6E-11 7.8E-16 115.7 18.0 130 515-651 41-179 (312)
124 KOG2984 Predicted hydrolase [G 99.3 1.8E-12 3.9E-17 115.9 5.4 208 538-768 43-275 (277)
125 PRK05855 short chain dehydroge 99.3 2.3E-11 5E-16 139.6 16.1 232 516-769 10-292 (582)
126 PF14583 Pectate_lyase22: Olig 99.3 1.1E-10 2.5E-15 118.4 18.5 309 47-421 41-383 (386)
127 PRK10439 enterobactin/ferric e 99.3 1.4E-10 3.1E-15 123.5 20.2 194 518-749 191-392 (411)
128 COG4946 Uncharacterized protei 99.3 3.7E-10 7.9E-15 113.5 21.4 294 52-466 331-654 (668)
129 KOG0318 WD40 repeat stress pro 99.3 3.3E-09 7.2E-14 108.2 27.8 268 30-338 6-342 (603)
130 TIGR01838 PHA_synth_I poly(R)- 99.3 6.3E-11 1.4E-15 128.9 16.8 216 521-750 174-457 (532)
131 COG2936 Predicted acyl esteras 99.3 7.8E-11 1.7E-15 125.5 17.0 129 516-653 27-161 (563)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1.5E-09 3.2E-14 113.0 26.3 204 101-429 75-288 (300)
133 PF12740 Chlorophyllase2: Chlo 99.3 1.7E-10 3.6E-15 111.9 16.3 177 523-748 6-205 (259)
134 KOG4627 Kynurenine formamidase 99.3 3.2E-11 7E-16 108.4 10.1 180 535-748 65-247 (270)
135 KOG0315 G-protein beta subunit 99.3 4.4E-10 9.5E-15 104.0 17.5 250 99-429 41-296 (311)
136 PF10282 Lactonase: Lactonase, 99.2 2.4E-09 5.3E-14 113.1 25.7 269 50-429 45-332 (345)
137 KOG0293 WD40 repeat-containing 99.2 4.2E-10 9.2E-15 111.2 17.8 276 99-452 225-502 (519)
138 PF05728 UPF0227: Uncharacteri 99.2 6.7E-10 1.5E-14 104.1 18.1 178 540-766 2-186 (187)
139 PF00756 Esterase: Putative es 99.2 1E-11 2.2E-16 125.6 6.0 204 518-749 5-237 (251)
140 COG2706 3-carboxymuconate cycl 99.2 1E-08 2.2E-13 101.0 26.1 228 101-431 91-333 (346)
141 PRK11028 6-phosphogluconolacto 99.2 2.7E-08 5.9E-13 105.0 31.8 257 100-465 36-303 (330)
142 PRK11028 6-phosphogluconolacto 99.2 7.5E-09 1.6E-13 109.3 27.2 256 49-429 42-314 (330)
143 PF02897 Peptidase_S9_N: Proly 99.2 1E-08 2.2E-13 111.8 29.0 273 102-469 127-407 (414)
144 PRK07868 acyl-CoA synthetase; 99.2 3.9E-10 8.5E-15 135.6 18.8 235 521-769 49-361 (994)
145 KOG0279 G protein beta subunit 99.2 1.3E-09 2.8E-14 102.7 17.6 266 71-418 37-312 (315)
146 COG4757 Predicted alpha/beta h 99.2 3.9E-10 8.4E-15 103.8 13.7 241 514-766 11-280 (281)
147 PF03583 LIP: Secretory lipase 99.2 1.1E-09 2.5E-14 111.5 18.0 204 557-770 17-282 (290)
148 KOG3101 Esterase D [General fu 99.2 2.6E-10 5.6E-15 103.0 10.8 212 519-750 26-263 (283)
149 KOG0272 U4/U6 small nuclear ri 99.1 1.9E-09 4.2E-14 107.1 17.5 266 100-451 177-449 (459)
150 KOG0318 WD40 repeat stress pro 99.1 7.8E-09 1.7E-13 105.6 22.0 67 101-177 193-260 (603)
151 PF10282 Lactonase: Lactonase, 99.1 7E-08 1.5E-12 102.0 29.9 259 100-465 38-321 (345)
152 cd00200 WD40 WD40 domain, foun 99.1 1E-08 2.3E-13 105.0 22.9 268 99-451 10-280 (289)
153 PF08538 DUF1749: Protein of u 99.1 5.1E-10 1.1E-14 110.5 12.1 223 536-767 32-303 (303)
154 PF00561 Abhydrolase_1: alpha/ 99.1 3.7E-11 8.1E-16 119.7 4.2 174 567-750 1-217 (230)
155 KOG0272 U4/U6 small nuclear ri 99.1 2.5E-09 5.4E-14 106.4 14.5 237 99-417 218-458 (459)
156 COG2706 3-carboxymuconate cycl 99.1 2.4E-07 5.3E-12 91.4 28.0 288 72-467 16-324 (346)
157 PF07224 Chlorophyllase: Chlor 99.1 5.5E-09 1.2E-13 98.5 15.8 117 520-652 32-158 (307)
158 KOG0286 G-protein beta subunit 99.1 3E-08 6.5E-13 94.2 20.7 263 99-446 56-329 (343)
159 KOG2564 Predicted acetyltransf 99.1 4.9E-09 1.1E-13 99.4 15.3 105 520-636 61-166 (343)
160 PRK13616 lipoprotein LpqB; Pro 99.1 7.9E-09 1.7E-13 114.7 19.7 104 46-171 354-466 (591)
161 COG3571 Predicted hydrolase of 99.1 1.1E-08 2.4E-13 88.4 16.0 185 537-768 14-210 (213)
162 KOG0273 Beta-transducin family 99.1 9E-09 2E-13 103.8 17.8 278 99-453 236-514 (524)
163 KOG0266 WD40 repeat-containing 99.1 9.1E-09 2E-13 112.7 19.7 279 99-458 160-448 (456)
164 PF03403 PAF-AH_p_II: Platelet 99.0 1.4E-09 3E-14 114.7 12.5 190 535-771 98-360 (379)
165 PF08662 eIF2A: Eukaryotic tra 99.0 3.9E-09 8.6E-14 100.9 14.3 154 157-408 10-163 (194)
166 KOG2055 WD40 repeat protein [G 99.0 1.2E-08 2.6E-13 102.7 17.4 248 99-468 214-469 (514)
167 TIGR02658 TTQ_MADH_Hv methylam 99.0 3E-07 6.5E-12 94.7 28.2 125 320-468 197-332 (352)
168 cd00312 Esterase_lipase Estera 99.0 8.5E-10 1.8E-14 123.3 9.7 128 521-652 79-214 (493)
169 KOG0291 WD40-repeat-containing 99.0 3.9E-08 8.5E-13 104.8 21.2 252 99-426 351-617 (893)
170 PF08662 eIF2A: Eukaryotic tra 99.0 1.6E-08 3.5E-13 96.6 16.9 165 101-358 8-180 (194)
171 PF06342 DUF1057: Alpha/beta h 99.0 8.1E-09 1.7E-13 99.5 13.5 105 534-650 32-136 (297)
172 KOG2382 Predicted alpha/beta h 99.0 1.7E-08 3.6E-13 100.0 15.8 224 533-770 48-314 (315)
173 PRK13616 lipoprotein LpqB; Pro 99.0 3.2E-08 6.9E-13 110.0 19.5 179 155-427 352-533 (591)
174 cd00200 WD40 WD40 domain, foun 99.0 8.7E-08 1.9E-12 98.1 21.8 269 48-416 16-288 (289)
175 KOG0772 Uncharacterized conser 98.9 9.3E-08 2E-12 97.6 20.4 280 64-453 181-478 (641)
176 TIGR01839 PHA_synth_II poly(R) 98.9 2.4E-08 5.2E-13 107.4 16.8 211 521-748 201-481 (560)
177 KOG0645 WD40 repeat protein [G 98.9 3.4E-07 7.4E-12 86.4 21.5 227 99-418 62-310 (312)
178 COG2272 PnbA Carboxylesterase 98.9 3.2E-09 6.9E-14 110.2 8.9 134 514-652 75-218 (491)
179 KOG2112 Lysophospholipase [Lip 98.9 3.5E-08 7.7E-13 90.8 14.6 189 537-769 3-204 (206)
180 COG2382 Fes Enterochelin ester 98.9 4.1E-08 9E-13 95.8 15.5 209 520-770 81-296 (299)
181 KOG1407 WD40 repeat protein [F 98.9 4.1E-07 9E-12 85.3 21.2 228 100-456 66-296 (313)
182 KOG1446 Histone H3 (Lys4) meth 98.9 6E-07 1.3E-11 86.8 22.9 254 99-431 15-272 (311)
183 KOG0266 WD40 repeat-containing 98.9 9.5E-08 2.1E-12 104.7 19.9 238 98-418 203-453 (456)
184 PF10340 DUF2424: Protein of u 98.9 6.1E-08 1.3E-12 99.2 16.6 221 523-767 108-364 (374)
185 KOG0315 G-protein beta subunit 98.9 3.9E-07 8.4E-12 84.9 19.8 253 125-453 20-279 (311)
186 KOG0279 G protein beta subunit 98.9 9.5E-08 2.1E-12 90.4 16.1 162 70-253 83-247 (315)
187 PF02239 Cytochrom_D1: Cytochr 98.9 6.9E-07 1.5E-11 94.3 24.5 263 102-467 40-348 (369)
188 PTZ00421 coronin; Provisional 98.9 4.2E-07 9.1E-12 99.4 23.5 182 218-468 98-292 (493)
189 KOG2624 Triglyceride lipase-ch 98.9 3.9E-08 8.4E-13 102.6 14.5 230 535-769 71-398 (403)
190 COG2021 MET2 Homoserine acetyl 98.9 9.4E-08 2E-12 96.0 16.4 229 534-768 48-367 (368)
191 KOG2055 WD40 repeat protein [G 98.9 7.4E-08 1.6E-12 97.1 15.6 241 50-419 266-512 (514)
192 COG4188 Predicted dienelactone 98.8 1.8E-08 3.8E-13 101.5 11.1 119 518-638 49-181 (365)
193 PTZ00421 coronin; Provisional 98.8 9.3E-07 2E-11 96.8 25.5 214 99-428 76-297 (493)
194 PF00135 COesterase: Carboxyle 98.8 3.7E-09 8E-14 120.0 7.1 132 515-650 105-244 (535)
195 COG0627 Predicted esterase [Ge 98.8 3.4E-08 7.3E-13 100.3 12.8 228 533-770 50-312 (316)
196 PF06821 Ser_hydrolase: Serine 98.8 6.1E-08 1.3E-12 90.1 13.6 168 540-767 1-170 (171)
197 KOG0263 Transcription initiati 98.8 8.5E-07 1.8E-11 95.7 23.3 198 99-358 452-650 (707)
198 KOG0275 Conserved WD40 repeat- 98.8 9.3E-08 2E-12 91.8 14.4 247 100-468 215-469 (508)
199 KOG0973 Histone transcription 98.8 1.6E-07 3.4E-12 104.7 18.3 148 98-336 69-239 (942)
200 KOG0293 WD40 repeat-containing 98.8 7.8E-08 1.7E-12 95.5 14.0 274 49-419 232-513 (519)
201 COG3208 GrsT Predicted thioest 98.8 1.1E-07 2.4E-12 90.0 14.1 206 534-766 5-233 (244)
202 PF09752 DUF2048: Uncharacteri 98.8 2.1E-07 4.5E-12 93.7 16.7 235 521-767 77-347 (348)
203 COG0596 MhpC Predicted hydrola 98.8 1.7E-07 3.7E-12 95.0 16.6 100 537-651 21-123 (282)
204 KOG0265 U5 snRNP-specific prot 98.8 9.6E-07 2.1E-11 84.6 19.4 284 99-463 48-335 (338)
205 cd00707 Pancreat_lipase_like P 98.8 3.2E-08 7E-13 100.3 10.1 112 536-652 35-148 (275)
206 TIGR03230 lipo_lipase lipoprot 98.8 5.6E-08 1.2E-12 102.9 12.0 112 536-651 40-154 (442)
207 KOG2096 WD40 repeat protein [G 98.8 1.5E-06 3.2E-11 83.8 20.1 297 49-452 85-393 (420)
208 PF02273 Acyl_transf_2: Acyl t 98.7 1.5E-07 3.3E-12 87.9 12.8 220 515-750 9-239 (294)
209 PTZ00420 coronin; Provisional 98.7 5E-06 1.1E-10 91.7 27.0 163 99-358 75-249 (568)
210 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.8E-06 3.9E-11 89.0 21.9 265 49-361 53-334 (352)
211 KOG0973 Histone transcription 98.7 3E-07 6.5E-12 102.6 16.1 65 238-338 128-193 (942)
212 KOG0291 WD40-repeat-containing 98.7 3.6E-06 7.8E-11 90.2 23.3 238 156-465 311-549 (893)
213 KOG3847 Phospholipase A2 (plat 98.7 2.9E-07 6.3E-12 88.9 13.7 169 533-748 114-328 (399)
214 PF02897 Peptidase_S9_N: Proly 98.7 2.2E-06 4.8E-11 93.6 22.7 264 46-429 128-412 (414)
215 COG2819 Predicted hydrolase of 98.7 1.6E-06 3.4E-11 83.9 18.1 210 517-767 19-259 (264)
216 PTZ00420 coronin; Provisional 98.7 6.1E-06 1.3E-10 91.0 25.1 156 106-361 34-201 (568)
217 KOG0286 G-protein beta subunit 98.7 1E-06 2.2E-11 84.0 16.3 268 65-416 70-342 (343)
218 KOG0305 Anaphase promoting com 98.7 1E-06 2.3E-11 93.1 17.9 242 99-419 218-461 (484)
219 TIGR01849 PHB_depoly_PhaZ poly 98.7 3.9E-07 8.4E-12 95.5 14.4 70 700-769 333-406 (406)
220 KOG0273 Beta-transducin family 98.6 2.2E-06 4.8E-11 86.9 18.9 265 49-408 243-513 (524)
221 KOG0284 Polyadenylation factor 98.6 3.3E-07 7.1E-12 91.2 12.5 239 100-419 98-337 (464)
222 TIGR03502 lipase_Pla1_cef extr 98.6 1.3E-06 2.7E-11 98.7 18.5 99 536-636 448-575 (792)
223 KOG2139 WD40 repeat protein [G 98.6 4E-06 8.7E-11 82.4 19.0 214 99-408 141-365 (445)
224 KOG0645 WD40 repeat protein [G 98.6 7.9E-06 1.7E-10 77.3 19.9 150 99-338 15-172 (312)
225 KOG0263 Transcription initiati 98.6 2E-07 4.4E-12 100.3 10.0 194 155-418 454-648 (707)
226 KOG1407 WD40 repeat protein [F 98.6 3.3E-06 7.2E-11 79.4 16.2 209 70-410 85-294 (313)
227 KOG0305 Anaphase promoting com 98.6 2.2E-06 4.7E-11 90.7 17.0 271 99-452 178-451 (484)
228 PF03959 FSH1: Serine hydrolas 98.6 2E-07 4.4E-12 90.8 8.5 168 536-750 3-203 (212)
229 KOG2551 Phospholipase/carboxyh 98.5 2.9E-06 6.2E-11 78.8 14.4 122 600-770 92-221 (230)
230 KOG4497 Uncharacterized conser 98.5 7.5E-07 1.6E-11 86.2 11.0 142 103-338 13-155 (447)
231 PLN00181 protein SPA1-RELATED; 98.5 9.6E-06 2.1E-10 96.1 23.0 240 99-417 484-736 (793)
232 PF08450 SGL: SMP-30/Gluconola 98.5 2.8E-05 6E-10 78.2 22.8 236 103-452 4-245 (246)
233 COG1073 Hydrolases of the alph 98.5 2E-06 4.4E-11 89.2 14.8 245 519-771 31-299 (299)
234 KOG0282 mRNA splicing factor [ 98.5 2.4E-06 5.1E-11 87.1 14.1 223 99-428 215-469 (503)
235 PRK10115 protease 2; Provision 98.5 3.3E-05 7.1E-10 88.7 25.3 207 155-465 129-345 (686)
236 KOG2314 Translation initiation 98.5 3.6E-05 7.8E-10 79.9 22.1 250 101-462 213-476 (698)
237 KOG0296 Angio-associated migra 98.5 2.5E-05 5.4E-10 77.1 20.0 207 99-430 65-272 (399)
238 KOG0275 Conserved WD40 repeat- 98.5 1.6E-06 3.5E-11 83.5 11.5 252 36-361 212-471 (508)
239 PRK04940 hypothetical protein; 98.5 5.5E-06 1.2E-10 76.0 14.4 119 616-767 60-178 (180)
240 PF07433 DUF1513: Protein of u 98.5 6.6E-05 1.4E-09 74.7 23.1 236 100-430 6-256 (305)
241 KOG2314 Translation initiation 98.4 7.1E-05 1.5E-09 77.8 23.8 294 49-454 257-559 (698)
242 KOG1553 Predicted alpha/beta h 98.4 5.2E-07 1.1E-11 88.1 7.5 178 514-719 220-398 (517)
243 KOG0282 mRNA splicing factor [ 98.4 5E-06 1.1E-10 84.8 13.9 211 99-416 259-502 (503)
244 KOG0296 Angio-associated migra 98.4 9.5E-05 2.1E-09 73.1 21.7 271 99-451 107-387 (399)
245 KOG0284 Polyadenylation factor 98.3 4.4E-06 9.4E-11 83.4 11.8 240 99-419 139-380 (464)
246 PF06433 Me-amine-dh_H: Methyl 98.3 0.00043 9.3E-09 69.8 26.1 264 100-469 37-323 (342)
247 PF11339 DUF3141: Protein of u 98.3 1.6E-05 3.6E-10 83.0 16.0 104 534-651 66-176 (581)
248 KOG0643 Translation initiation 98.3 4E-05 8.7E-10 72.5 17.0 183 210-450 66-249 (327)
249 KOG1274 WD40 repeat protein [G 98.3 2.5E-05 5.4E-10 86.0 18.0 232 155-450 16-250 (933)
250 KOG4497 Uncharacterized conser 98.3 0.00011 2.5E-09 71.4 20.3 60 390-450 320-379 (447)
251 PF02239 Cytochrom_D1: Cytochr 98.3 2.6E-05 5.7E-10 82.4 17.8 195 113-429 7-210 (369)
252 PF12146 Hydrolase_4: Putative 98.3 1.2E-06 2.6E-11 69.5 5.7 56 518-579 1-56 (79)
253 PF10230 DUF2305: Uncharacteri 98.3 1.1E-05 2.5E-10 81.2 14.0 111 537-651 2-122 (266)
254 KOG2139 WD40 repeat protein [G 98.3 1.9E-05 4E-10 77.8 14.4 152 201-420 145-310 (445)
255 KOG2315 Predicted translation 98.3 0.00012 2.7E-09 76.4 21.2 253 43-419 128-390 (566)
256 KOG1446 Histone H3 (Lys4) meth 98.3 4.2E-05 9.1E-10 74.3 16.5 170 70-337 120-294 (311)
257 KOG1274 WD40 repeat protein [G 98.2 0.0001 2.2E-09 81.3 20.1 154 156-422 100-263 (933)
258 KOG2096 WD40 repeat protein [G 98.2 0.00012 2.7E-09 70.9 18.3 110 240-404 279-389 (420)
259 PLN00181 protein SPA1-RELATED; 98.2 0.00012 2.6E-09 86.9 22.8 210 99-417 576-791 (793)
260 KOG0278 Serine/threonine kinas 98.2 5E-05 1.1E-09 71.1 14.8 176 54-332 104-283 (334)
261 KOG0771 Prolactin regulatory e 98.2 2.8E-05 6E-10 78.4 14.0 209 100-420 146-355 (398)
262 COG3243 PhaC Poly(3-hydroxyalk 98.2 1.7E-05 3.8E-10 81.0 12.5 90 556-653 129-219 (445)
263 PF11144 DUF2920: Protein of u 98.2 5.1E-05 1.1E-09 78.1 15.9 147 597-743 163-332 (403)
264 PF10142 PhoPQ_related: PhoPQ- 98.2 0.00016 3.4E-09 75.0 19.0 237 522-770 51-321 (367)
265 KOG0772 Uncharacterized conser 98.2 2.6E-05 5.7E-10 80.2 13.0 260 99-465 168-444 (641)
266 COG3545 Predicted esterase of 98.1 0.0002 4.3E-09 64.4 16.6 139 592-768 38-178 (181)
267 PF06057 VirJ: Bacterial virul 98.1 2.7E-05 5.9E-10 71.6 11.6 182 538-767 3-190 (192)
268 PF07433 DUF1513: Protein of u 98.1 0.0015 3.3E-08 65.2 24.4 222 52-362 16-252 (305)
269 KOG0643 Translation initiation 98.1 0.00011 2.4E-09 69.6 15.4 215 100-420 95-318 (327)
270 COG3386 Gluconolactonase [Carb 98.1 0.0011 2.4E-08 67.7 24.0 190 219-457 86-280 (307)
271 KOG1273 WD40 repeat protein [G 98.1 0.00036 7.7E-09 67.8 18.6 235 69-432 42-291 (405)
272 PF06028 DUF915: Alpha/beta hy 98.1 4.6E-05 9.9E-10 75.3 12.7 210 537-766 11-252 (255)
273 KOG1445 Tumor-specific antigen 98.1 0.00011 2.4E-09 77.4 15.7 141 216-417 698-842 (1012)
274 KOG2315 Predicted translation 98.1 0.00079 1.7E-08 70.6 21.5 153 244-454 222-376 (566)
275 KOG0639 Transducin-like enhanc 98.0 0.0001 2.2E-09 75.6 14.3 214 70-338 438-655 (705)
276 PF10647 Gmad1: Lipoprotein Lp 98.0 0.0004 8.7E-09 69.5 18.6 175 156-430 27-206 (253)
277 KOG0288 WD40 repeat protein Ti 98.0 3.7E-05 8.1E-10 77.1 10.6 278 51-416 174-458 (459)
278 KOG0639 Transducin-like enhanc 98.0 0.00018 3.9E-09 73.9 15.5 226 101-450 422-651 (705)
279 KOG1516 Carboxylesterase and r 98.0 1.9E-05 4.2E-10 89.5 9.2 126 521-650 97-231 (545)
280 KOG0283 WD40 repeat-containing 98.0 0.00042 9.1E-09 76.0 18.2 100 200-337 373-472 (712)
281 PLN02919 haloacid dehalogenase 98.0 0.019 4.2E-07 69.4 34.2 133 319-468 742-890 (1057)
282 KOG0288 WD40 repeat protein Ti 98.0 7.2E-05 1.6E-09 75.1 11.3 270 99-451 176-450 (459)
283 KOG0319 WD40-repeat-containing 98.0 0.00036 7.9E-09 75.3 17.2 155 99-287 63-221 (775)
284 KOG0306 WD40-repeat-containing 97.9 0.0022 4.8E-08 69.5 22.9 271 94-451 369-653 (888)
285 COG5354 Uncharacterized protei 97.9 0.002 4.4E-08 66.8 21.7 180 218-455 202-382 (561)
286 KOG1009 Chromatin assembly com 97.9 0.00017 3.7E-09 72.4 13.0 175 94-334 61-248 (434)
287 KOG0278 Serine/threonine kinas 97.9 0.00014 3E-09 68.2 11.5 134 218-420 165-298 (334)
288 KOG0289 mRNA splicing factor [ 97.9 0.0053 1.2E-07 62.5 22.9 206 99-429 262-470 (506)
289 KOG3253 Predicted alpha/beta h 97.9 0.00026 5.7E-09 74.9 14.4 168 536-751 175-348 (784)
290 KOG0640 mRNA cleavage stimulat 97.9 0.00026 5.6E-09 68.5 13.1 281 99-445 113-409 (430)
291 PF07819 PGAP1: PGAP1-like pro 97.8 0.00012 2.5E-09 71.7 10.7 103 537-648 4-120 (225)
292 KOG0265 U5 snRNP-specific prot 97.8 0.00084 1.8E-08 64.9 15.7 161 217-448 68-232 (338)
293 KOG2931 Differentiation-relate 97.8 0.0012 2.7E-08 64.2 17.0 232 520-767 33-304 (326)
294 PF08450 SGL: SMP-30/Gluconola 97.8 0.0011 2.3E-08 66.6 17.8 178 217-466 21-213 (246)
295 KOG4840 Predicted hydrolases o 97.8 0.00092 2E-08 61.9 15.2 108 537-654 36-147 (299)
296 PF03096 Ndr: Ndr family; Int 97.8 0.00082 1.8E-08 66.4 15.3 231 520-767 10-277 (283)
297 PF05677 DUF818: Chlamydia CHL 97.8 0.00026 5.7E-09 70.7 11.6 111 517-637 120-236 (365)
298 KOG0310 Conserved WD40 repeat- 97.8 0.0015 3.2E-08 67.4 17.0 232 99-455 69-302 (487)
299 COG3391 Uncharacterized conser 97.7 0.012 2.6E-07 63.1 25.1 187 217-466 95-283 (381)
300 PF12048 DUF3530: Protein of u 97.7 0.0013 2.9E-08 67.6 17.1 207 517-769 70-309 (310)
301 KOG2919 Guanine nucleotide-bin 97.7 0.0017 3.6E-08 63.5 16.2 113 201-358 163-282 (406)
302 COG3150 Predicted esterase [Ge 97.7 0.00062 1.3E-08 60.3 11.9 142 597-767 42-187 (191)
303 PF05705 DUF829: Eukaryotic pr 97.7 0.00041 8.9E-09 69.3 12.6 65 702-766 176-240 (240)
304 KOG0306 WD40-repeat-containing 97.7 0.0011 2.4E-08 71.8 15.9 192 98-417 454-662 (888)
305 PF10647 Gmad1: Lipoprotein Lp 97.7 0.0016 3.4E-08 65.2 16.4 152 100-337 25-186 (253)
306 KOG1524 WD40 repeat-containing 97.7 0.00033 7.1E-09 72.7 11.2 57 99-170 105-163 (737)
307 COG3490 Uncharacterized protei 97.7 0.014 3E-07 56.6 20.8 237 101-429 70-318 (366)
308 COG5354 Uncharacterized protei 97.7 0.0056 1.2E-07 63.7 19.5 170 99-358 174-349 (561)
309 KOG2048 WD40 repeat protein [G 97.6 0.0097 2.1E-07 64.0 21.5 157 99-361 26-188 (691)
310 PF01674 Lipase_2: Lipase (cla 97.6 0.00015 3.3E-09 69.7 7.7 90 539-636 3-95 (219)
311 PF05577 Peptidase_S28: Serine 97.6 0.00025 5.5E-09 77.7 10.3 112 537-652 29-149 (434)
312 KOG1273 WD40 repeat protein [G 97.6 0.0031 6.7E-08 61.5 16.1 185 156-451 27-215 (405)
313 KOG0268 Sof1-like rRNA process 97.6 0.0002 4.3E-09 70.8 8.1 138 216-420 208-346 (433)
314 PF00151 Lipase: Lipase; Inte 97.6 6E-05 1.3E-09 78.0 4.9 114 534-651 68-187 (331)
315 KOG2394 WD40 protein DMR-N9 [G 97.6 0.0012 2.5E-08 68.9 13.9 159 212-419 189-362 (636)
316 PRK02888 nitrous-oxide reducta 97.6 0.0059 1.3E-07 66.9 20.0 40 217-262 214-253 (635)
317 KOG0319 WD40-repeat-containing 97.6 0.0054 1.2E-07 66.6 19.3 296 99-462 193-533 (775)
318 PF07676 PD40: WD40-like Beta 97.6 7.5E-05 1.6E-09 50.3 3.7 29 310-338 2-30 (39)
319 KOG0295 WD40 repeat-containing 97.6 0.00054 1.2E-08 67.9 10.9 211 99-361 151-368 (406)
320 PF06433 Me-amine-dh_H: Methyl 97.6 0.018 3.9E-07 58.4 21.8 134 241-433 185-332 (342)
321 KOG0283 WD40 repeat-containing 97.6 0.0018 3.9E-08 71.3 15.7 197 98-418 369-575 (712)
322 KOG2106 Uncharacterized conser 97.6 0.011 2.3E-07 61.5 20.0 155 217-421 427-583 (626)
323 KOG2106 Uncharacterized conser 97.6 0.018 4E-07 59.8 21.6 259 99-449 247-508 (626)
324 COG1506 DAP2 Dipeptidyl aminop 97.6 0.0072 1.6E-07 69.2 21.2 224 100-427 14-259 (620)
325 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.005 1.1E-07 69.7 19.1 97 111-264 319-420 (912)
326 KOG0295 WD40 repeat-containing 97.5 0.0011 2.4E-08 65.8 12.2 250 157-468 113-366 (406)
327 KOG1539 WD repeat protein [Gen 97.5 0.0028 6.1E-08 69.6 16.1 96 213-355 551-646 (910)
328 KOG0313 Microtubule binding pr 97.5 0.02 4.4E-07 57.4 20.6 128 239-431 260-388 (423)
329 KOG0771 Prolactin regulatory e 97.5 0.0016 3.5E-08 66.0 13.0 209 25-338 132-346 (398)
330 KOG1524 WD40 repeat-containing 97.5 0.0018 3.9E-08 67.4 13.5 96 156-333 108-203 (737)
331 PLN02733 phosphatidylcholine-s 97.5 0.00022 4.8E-09 76.5 7.3 89 553-650 108-200 (440)
332 COG4814 Uncharacterized protei 97.5 0.0055 1.2E-07 58.4 15.3 207 537-767 46-285 (288)
333 KOG0277 Peroxisomal targeting 97.5 0.0021 4.4E-08 60.9 12.1 251 101-426 11-272 (311)
334 KOG0303 Actin-binding protein 97.4 0.0064 1.4E-07 61.2 16.0 146 238-451 130-282 (472)
335 PF07676 PD40: WD40-like Beta 97.4 0.00024 5.1E-09 47.8 4.2 35 88-127 3-38 (39)
336 KOG1445 Tumor-specific antigen 97.4 0.0044 9.6E-08 65.8 15.2 120 241-422 679-799 (1012)
337 COG4947 Uncharacterized protei 97.4 0.0015 3.2E-08 57.9 9.8 117 602-748 88-215 (227)
338 KOG0641 WD40 repeat protein [G 97.4 0.059 1.3E-06 50.1 20.3 129 278-451 161-292 (350)
339 PTZ00472 serine carboxypeptida 97.4 0.002 4.4E-08 70.3 13.0 131 518-653 60-218 (462)
340 KOG0289 mRNA splicing factor [ 97.4 0.0067 1.4E-07 61.8 15.2 193 100-338 305-498 (506)
341 KOG0650 WD40 repeat nucleolar 97.3 0.0086 1.9E-07 63.5 15.9 262 99-462 401-678 (733)
342 PF07519 Tannase: Tannase and 97.3 0.0061 1.3E-07 66.7 15.8 64 705-768 354-426 (474)
343 KOG0640 mRNA cleavage stimulat 97.3 0.0097 2.1E-07 57.9 14.7 208 49-363 171-389 (430)
344 KOG0647 mRNA export protein (c 97.3 0.068 1.5E-06 52.3 20.2 111 99-266 28-138 (347)
345 KOG2110 Uncharacterized conser 97.3 0.0022 4.8E-08 63.9 10.5 143 218-421 106-250 (391)
346 KOG2048 WD40 repeat protein [G 97.2 0.013 2.9E-07 63.0 16.8 164 99-360 383-551 (691)
347 PF04762 IKI3: IKI3 family; I 97.2 0.056 1.2E-06 64.2 23.7 85 217-336 236-324 (928)
348 KOG0294 WD40 repeat-containing 97.2 0.067 1.5E-06 52.6 19.6 154 39-262 32-187 (362)
349 PF15492 Nbas_N: Neuroblastoma 97.2 0.048 1E-06 53.1 18.6 56 103-170 2-61 (282)
350 KOG0303 Actin-binding protein 97.2 0.035 7.5E-07 56.1 17.9 216 36-356 27-248 (472)
351 COG3386 Gluconolactonase [Carb 97.2 0.0086 1.9E-07 61.2 14.2 78 319-421 113-193 (307)
352 PF00975 Thioesterase: Thioest 97.2 0.0015 3.3E-08 64.7 8.8 97 539-649 2-102 (229)
353 KOG0264 Nucleosome remodeling 97.2 0.05 1.1E-06 56.0 19.3 151 218-419 250-404 (422)
354 KOG2394 WD40 protein DMR-N9 [G 97.2 0.00018 3.9E-09 74.7 2.0 92 99-206 291-384 (636)
355 COG3391 Uncharacterized conser 97.1 0.12 2.7E-06 55.3 23.4 211 101-430 76-292 (381)
356 KOG0307 Vesicle coat complex C 97.1 0.0026 5.7E-08 72.4 10.5 286 100-461 8-324 (1049)
357 KOG1063 RNA polymerase II elon 97.1 0.1 2.2E-06 56.7 21.4 123 241-420 527-649 (764)
358 KOG1007 WD repeat protein TSSC 97.1 0.054 1.2E-06 52.5 17.5 241 49-338 20-280 (370)
359 KOG0316 Conserved WD40 repeat- 97.1 0.069 1.5E-06 50.3 17.6 198 99-364 18-220 (307)
360 KOG2565 Predicted hydrolases o 97.1 0.0021 4.6E-08 64.4 8.4 118 517-645 132-258 (469)
361 PF05990 DUF900: Alpha/beta hy 97.1 0.0033 7.2E-08 61.9 9.9 112 535-652 16-138 (233)
362 KOG1332 Vesicle coat complex C 97.1 0.048 1E-06 51.6 16.5 160 218-430 128-296 (299)
363 KOG0641 WD40 repeat protein [G 97.0 0.054 1.2E-06 50.3 16.4 144 213-419 199-349 (350)
364 KOG0277 Peroxisomal targeting 97.0 0.014 3.1E-07 55.4 12.6 174 216-452 36-210 (311)
365 KOG3975 Uncharacterized conser 97.0 0.052 1.1E-06 51.8 16.3 129 518-649 10-145 (301)
366 PF04762 IKI3: IKI3 family; I 97.0 0.25 5.5E-06 58.8 26.2 110 318-452 211-324 (928)
367 KOG1063 RNA polymerase II elon 97.0 0.023 4.9E-07 61.5 15.6 119 148-338 520-640 (764)
368 PF07082 DUF1350: Protein of u 96.9 0.0047 1E-07 59.5 9.2 193 523-749 8-205 (250)
369 KOG1332 Vesicle coat complex C 96.9 0.11 2.4E-06 49.3 17.7 61 391-451 210-275 (299)
370 PF00450 Peptidase_S10: Serine 96.9 0.008 1.7E-07 65.7 12.5 134 517-653 22-183 (415)
371 KOG1539 WD repeat protein [Gen 96.9 0.0076 1.7E-07 66.4 11.6 89 280-418 556-645 (910)
372 COG1770 PtrB Protease II [Amin 96.9 0.63 1.4E-05 51.3 25.8 262 49-431 136-406 (682)
373 KOG0302 Ribosome Assembly prot 96.9 0.052 1.1E-06 54.6 16.2 150 209-420 225-379 (440)
374 KOG0307 Vesicle coat complex C 96.9 0.0057 1.2E-07 69.8 10.9 251 100-419 66-327 (1049)
375 KOG2110 Uncharacterized conser 96.9 0.15 3.3E-06 51.3 19.1 98 217-358 152-251 (391)
376 PRK02888 nitrous-oxide reducta 96.8 0.046 1E-06 60.1 16.9 39 218-262 296-339 (635)
377 PLN02919 haloacid dehalogenase 96.8 0.13 2.7E-06 62.5 22.2 91 320-428 686-777 (1057)
378 KOG0310 Conserved WD40 repeat- 96.8 0.058 1.3E-06 56.1 16.3 186 99-407 111-298 (487)
379 TIGR02171 Fb_sc_TIGR02171 Fibr 96.8 0.0063 1.4E-07 69.0 10.1 59 281-362 330-390 (912)
380 KOG2919 Guanine nucleotide-bin 96.8 0.058 1.3E-06 53.2 15.2 36 222-262 234-269 (406)
381 KOG4389 Acetylcholinesterase/B 96.8 0.0024 5.1E-08 66.5 6.0 130 515-652 117-256 (601)
382 KOG1009 Chromatin assembly com 96.8 0.029 6.3E-07 56.9 13.3 62 241-338 125-187 (434)
383 KOG0285 Pleiotropic regulator 96.7 0.096 2.1E-06 52.3 16.3 229 65-363 166-395 (460)
384 KOG1007 WD repeat protein TSSC 96.7 0.093 2E-06 51.0 15.5 145 241-451 125-277 (370)
385 KOG0264 Nucleosome remodeling 96.7 0.11 2.3E-06 53.6 17.0 149 210-420 192-348 (422)
386 KOG3967 Uncharacterized conser 96.7 0.03 6.4E-07 51.8 11.6 137 490-639 62-213 (297)
387 KOG1538 Uncharacterized conser 96.6 0.13 2.7E-06 55.6 17.5 91 50-170 21-111 (1081)
388 KOG1538 Uncharacterized conser 96.6 0.032 6.9E-07 60.0 13.0 58 100-171 14-72 (1081)
389 KOG0292 Vesicle coat complex C 96.5 0.12 2.6E-06 57.8 17.2 257 99-420 10-281 (1202)
390 KOG0299 U3 snoRNP-associated p 96.5 0.13 2.8E-06 53.2 16.3 57 393-450 385-443 (479)
391 COG4782 Uncharacterized protei 96.5 0.0096 2.1E-07 60.2 8.3 113 535-653 114-236 (377)
392 PF06977 SdiA-regulated: SdiA- 96.5 0.25 5.4E-06 48.9 17.9 200 156-451 25-239 (248)
393 COG3490 Uncharacterized protei 96.5 0.14 3.1E-06 49.8 15.4 183 103-362 118-315 (366)
394 KOG0269 WD40 repeat-containing 96.5 0.036 7.8E-07 60.8 12.6 129 65-253 149-277 (839)
395 KOG4328 WD40 protein [Function 96.4 0.39 8.4E-06 49.8 19.0 205 99-356 187-398 (498)
396 PRK10252 entF enterobactin syn 96.4 0.023 5E-07 72.1 13.2 99 537-649 1068-1169(1296)
397 KOG0646 WD40 repeat protein [G 96.4 0.043 9.2E-07 56.7 12.0 215 99-361 82-311 (476)
398 KOG0650 WD40 repeat nucleolar 96.3 0.12 2.5E-06 55.3 15.2 146 154-336 523-680 (733)
399 KOG0647 mRNA export protein (c 96.3 0.63 1.4E-05 45.8 18.8 229 56-338 33-273 (347)
400 KOG1523 Actin-related protein 96.3 0.092 2E-06 51.8 13.2 103 156-337 14-121 (361)
401 KOG2183 Prolylcarboxypeptidase 96.3 0.021 4.5E-07 58.5 9.2 92 560-651 105-203 (492)
402 PF06977 SdiA-regulated: SdiA- 96.3 0.21 4.5E-06 49.4 16.0 170 99-357 22-201 (248)
403 PF08386 Abhydrolase_4: TAP-li 96.3 0.0087 1.9E-07 50.4 5.5 59 704-767 34-92 (103)
404 KOG2182 Hydrolytic enzymes of 96.2 0.02 4.4E-07 60.3 9.1 136 512-651 62-207 (514)
405 PF04053 Coatomer_WDAD: Coatom 96.2 0.14 3E-06 55.5 15.8 38 281-337 127-165 (443)
406 KOG0285 Pleiotropic regulator 96.2 0.31 6.6E-06 48.9 16.3 201 97-361 150-352 (460)
407 KOG4378 Nuclear protein COP1 [ 96.1 0.11 2.5E-06 54.0 13.6 138 101-327 167-304 (673)
408 KOG4388 Hormone-sensitive lipa 96.1 0.012 2.7E-07 62.4 6.8 91 535-636 394-489 (880)
409 KOG0316 Conserved WD40 repeat- 96.1 0.055 1.2E-06 50.9 10.1 179 200-429 21-221 (307)
410 KOG1408 WD40 repeat protein [F 96.1 0.067 1.4E-06 58.2 12.0 104 101-266 40-145 (1080)
411 KOG2321 WD40 repeat protein [G 96.1 0.42 9E-06 51.1 17.4 115 318-466 230-346 (703)
412 KOG1523 Actin-related protein 96.0 0.51 1.1E-05 46.8 16.6 211 100-359 12-238 (361)
413 COG1075 LipA Predicted acetylt 95.9 0.024 5.2E-07 59.4 8.0 99 539-651 61-164 (336)
414 KOG0268 Sof1-like rRNA process 95.8 0.067 1.5E-06 53.6 9.9 82 218-337 251-336 (433)
415 KOG0292 Vesicle coat complex C 95.8 0.34 7.4E-06 54.4 16.1 232 156-447 13-265 (1202)
416 COG3319 Thioesterase domains o 95.7 0.035 7.6E-07 54.9 7.8 100 538-652 1-104 (257)
417 KOG1963 WD40 repeat protein [G 95.7 1.7 3.6E-05 49.1 21.2 60 99-173 252-313 (792)
418 PF13360 PQQ_2: PQQ-like domai 95.7 2.4 5.1E-05 41.9 21.5 61 399-469 173-233 (238)
419 COG3204 Uncharacterized protei 95.7 1.8 3.8E-05 42.9 18.9 113 156-355 89-210 (316)
420 KOG2321 WD40 repeat protein [G 95.7 0.61 1.3E-05 49.9 16.7 113 240-419 229-343 (703)
421 KOG2111 Uncharacterized conser 95.6 1.2 2.6E-05 44.2 17.5 97 279-420 158-257 (346)
422 KOG1282 Serine carboxypeptidas 95.6 0.063 1.4E-06 57.6 9.8 136 516-653 54-215 (454)
423 KOG1920 IkappaB kinase complex 95.6 2.9 6.2E-05 49.3 23.1 85 218-337 222-310 (1265)
424 KOG0269 WD40 repeat-containing 95.6 0.088 1.9E-06 57.9 10.6 142 216-421 154-296 (839)
425 KOG0302 Ribosome Assembly prot 95.5 0.36 7.7E-06 48.9 13.8 117 156-359 261-380 (440)
426 TIGR03712 acc_sec_asp2 accesso 95.5 0.43 9.2E-06 50.7 14.8 123 518-660 275-399 (511)
427 KOG4328 WD40 protein [Function 95.4 0.35 7.7E-06 50.1 13.5 171 216-452 208-389 (498)
428 KOG0313 Microtubule binding pr 95.4 1.9 4E-05 44.0 18.1 99 216-360 279-379 (423)
429 KOG1551 Uncharacterized conser 95.4 0.077 1.7E-06 50.9 8.2 111 521-643 102-222 (371)
430 KOG0294 WD40 repeat-containing 95.3 3.4 7.3E-05 41.2 20.0 83 217-337 106-189 (362)
431 PLN03016 sinapoylglucose-malat 95.3 0.13 2.8E-06 55.6 11.1 63 704-768 347-430 (433)
432 PF11187 DUF2974: Protein of u 95.2 0.031 6.7E-07 54.4 5.5 49 601-649 69-121 (224)
433 KOG0290 Conserved WD40 repeat- 95.2 1.3 2.8E-05 43.4 15.8 34 218-253 173-210 (364)
434 PF05057 DUF676: Putative seri 95.2 0.032 6.9E-07 54.5 5.3 22 615-636 77-98 (217)
435 KOG3724 Negative regulator of 95.1 0.066 1.4E-06 59.4 8.0 70 566-643 132-208 (973)
436 KOG1920 IkappaB kinase complex 95.0 1.5 3.2E-05 51.5 18.4 60 101-174 71-131 (1265)
437 KOG1036 Mitotic spindle checkp 95.0 4 8.6E-05 40.5 18.7 59 391-452 235-294 (323)
438 KOG4283 Transcription-coupled 94.9 0.43 9.2E-06 46.7 11.8 156 213-432 61-232 (397)
439 KOG4378 Nuclear protein COP1 [ 94.9 3.7 8E-05 43.4 19.1 139 216-422 141-281 (673)
440 KOG1963 WD40 repeat protein [G 94.8 0.58 1.3E-05 52.6 14.2 94 101-253 208-306 (792)
441 PF13449 Phytase-like: Esteras 94.7 6.4 0.00014 41.1 21.7 98 316-422 146-252 (326)
442 COG4257 Vgb Streptogramin lyas 94.6 2.1 4.6E-05 41.8 15.6 176 216-466 81-262 (353)
443 PLN02209 serine carboxypeptida 94.5 0.36 7.7E-06 52.3 11.7 134 517-653 50-214 (437)
444 KOG2041 WD40 repeat protein [G 94.5 2.5 5.5E-05 46.6 17.4 57 100-170 117-174 (1189)
445 PF02450 LCAT: Lecithin:choles 94.5 0.13 2.8E-06 55.1 8.3 82 554-650 66-159 (389)
446 KOG0299 U3 snoRNP-associated p 94.3 0.19 4.2E-06 52.0 8.6 135 236-420 139-275 (479)
447 COG3204 Uncharacterized protei 94.3 4.2 9E-05 40.4 17.2 58 99-167 86-143 (316)
448 PF11288 DUF3089: Protein of u 94.3 0.076 1.6E-06 50.4 5.2 85 566-651 45-137 (207)
449 COG2319 FOG: WD40 repeat [Gene 94.1 6.9 0.00015 41.7 21.4 35 218-253 178-212 (466)
450 PRK13613 lipoprotein LpqB; Pro 94.0 4.3 9.4E-05 45.9 19.1 105 46-174 367-476 (599)
451 KOG3621 WD40 repeat-containing 93.9 3.5 7.6E-05 45.6 17.2 120 28-170 14-142 (726)
452 KOG0267 Microtubule severing p 93.8 0.27 5.8E-06 53.9 8.8 176 54-253 74-252 (825)
453 KOG0308 Conserved WD40 repeat- 93.7 0.47 1E-05 51.5 10.2 153 156-358 77-244 (735)
454 KOG0276 Vesicle coat complex C 93.6 14 0.0003 40.6 23.3 160 69-252 74-240 (794)
455 PF01764 Lipase_3: Lipase (cla 93.5 0.16 3.6E-06 45.5 5.9 53 597-651 47-106 (140)
456 KOG0274 Cdc4 and related F-box 93.5 9.7 0.00021 42.6 20.6 92 216-359 309-402 (537)
457 KOG2111 Uncharacterized conser 93.3 9.7 0.00021 38.2 22.3 86 216-338 157-248 (346)
458 TIGR02604 Piru_Ver_Nterm putat 93.3 7 0.00015 41.7 18.8 60 391-452 126-202 (367)
459 PRK13614 lipoprotein LpqB; Pro 93.3 10 0.00022 42.5 20.2 89 318-429 435-526 (573)
460 TIGR02604 Piru_Ver_Nterm putat 93.1 3.8 8.3E-05 43.7 16.5 73 241-336 125-202 (367)
461 KOG0321 WD40 repeat-containing 93.0 2.8 6.1E-05 45.7 14.6 38 216-253 120-158 (720)
462 KOG0276 Vesicle coat complex C 92.9 5.4 0.00012 43.5 16.4 237 100-417 15-255 (794)
463 KOG0308 Conserved WD40 repeat- 92.9 1.1 2.4E-05 48.8 11.4 161 191-420 68-244 (735)
464 KOG1034 Transcriptional repres 92.8 0.74 1.6E-05 45.9 9.3 144 216-419 64-211 (385)
465 KOG0270 WD40 repeat-containing 92.8 4.1 8.8E-05 42.5 14.9 161 202-426 249-411 (463)
466 KOG2521 Uncharacterized conser 92.8 3.3 7.1E-05 42.9 14.5 66 704-769 225-290 (350)
467 KOG4283 Transcription-coupled 92.7 11 0.00025 37.2 22.3 111 216-362 166-281 (397)
468 PF03283 PAE: Pectinacetyleste 92.6 0.38 8.3E-06 50.6 7.8 39 597-635 137-175 (361)
469 cd00741 Lipase Lipase. Lipase 92.6 0.28 6E-06 44.9 6.1 39 598-638 12-50 (153)
470 KOG0300 WD40 repeat-containing 92.3 4.3 9.4E-05 40.2 13.6 93 218-358 294-387 (481)
471 PF11768 DUF3312: Protein of u 92.2 20 0.00044 39.2 19.9 94 218-359 236-331 (545)
472 PRK13615 lipoprotein LpqB; Pro 92.2 11 0.00023 42.2 18.5 99 46-173 338-437 (557)
473 KOG4547 WD40 repeat-containing 92.1 6.4 0.00014 42.6 15.9 100 214-362 76-177 (541)
474 PRK13614 lipoprotein LpqB; Pro 91.9 8.4 0.00018 43.2 17.4 56 100-170 344-399 (573)
475 KOG4532 WD40-like repeat conta 91.9 13 0.00029 36.3 16.7 84 314-422 248-332 (344)
476 smart00824 PKS_TE Thioesterase 91.7 0.9 1.9E-05 43.7 8.9 83 554-649 14-100 (212)
477 KOG3914 WD repeat protein WDR4 91.6 4.1 9E-05 41.9 13.3 94 219-361 133-227 (390)
478 PLN02606 palmitoyl-protein thi 91.6 1.6 3.5E-05 44.0 10.3 102 536-649 26-130 (306)
479 COG2939 Carboxypeptidase C (ca 91.5 0.36 7.8E-06 51.6 6.0 110 521-635 87-217 (498)
480 PRK13615 lipoprotein LpqB; Pro 91.4 11 0.00023 42.3 17.4 159 102-359 337-504 (557)
481 PLN02517 phosphatidylcholine-s 91.3 0.35 7.6E-06 52.9 5.7 75 554-635 157-232 (642)
482 PF13360 PQQ_2: PQQ-like domai 91.2 2.6 5.7E-05 41.6 11.9 141 218-426 3-145 (238)
483 PRK13613 lipoprotein LpqB; Pro 91.0 12 0.00025 42.5 17.5 86 318-425 456-543 (599)
484 KOG2100 Dipeptidyl aminopeptid 90.9 18 0.0004 42.5 19.6 74 394-467 345-423 (755)
485 COG2319 FOG: WD40 repeat [Gene 90.8 25 0.00053 37.4 23.7 165 218-449 134-301 (466)
486 KOG1034 Transcriptional repres 90.6 7.3 0.00016 39.1 13.5 98 216-360 113-214 (385)
487 PLN02454 triacylglycerol lipas 90.6 0.72 1.6E-05 48.7 7.2 55 597-651 209-271 (414)
488 PLN02633 palmitoyl protein thi 90.5 2.4 5.2E-05 42.8 10.3 102 536-649 25-129 (314)
489 PF11768 DUF3312: Protein of u 90.4 6.8 0.00015 42.7 14.2 146 216-421 182-331 (545)
490 cd00519 Lipase_3 Lipase (class 90.2 0.53 1.2E-05 46.4 5.7 52 598-651 112-168 (229)
491 KOG0281 Beta-TrCP (transducin 89.8 0.8 1.7E-05 45.8 6.2 150 210-433 249-400 (499)
492 KOG4227 WD40 repeat protein [G 89.8 5.8 0.00012 40.5 12.2 161 229-452 95-264 (609)
493 PF02089 Palm_thioest: Palmito 89.7 1.3 2.8E-05 44.2 7.7 106 535-649 4-114 (279)
494 COG4287 PqaA PhoPQ-activated p 89.7 0.7 1.5E-05 46.9 5.8 147 597-750 214-372 (507)
495 PF03088 Str_synth: Strictosid 89.2 1.5 3.3E-05 35.4 6.4 72 394-468 3-89 (89)
496 KOG1408 WD40 repeat protein [F 89.1 15 0.00033 40.9 15.5 109 203-358 603-714 (1080)
497 KOG1520 Predicted alkaloid syn 89.0 10 0.00022 39.3 13.7 126 201-359 119-251 (376)
498 KOG0646 WD40 repeat protein [G 89.0 4.4 9.5E-05 42.5 11.0 85 216-338 59-145 (476)
499 KOG0322 G-protein beta subunit 88.8 1.9 4E-05 41.8 7.6 102 202-338 211-315 (323)
500 PF13449 Phytase-like: Esteras 88.7 34 0.00073 35.8 22.3 146 102-288 88-251 (326)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-48 Score=436.17 Aligned_cols=608 Identities=22% Similarity=0.307 Sum_probs=423.8
Q ss_pred HhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe
Q 004149 33 DFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 33 ~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
.+..+..+....+ +++|..++|..+..+.........+|+.+... ...++.. ..+..+.|||||+.
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~ 73 (620)
T COG1506 8 DLLALARVSDPRV----SPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSV 73 (620)
T ss_pred HHHhhhcccCccc----CCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCE
Confidence 4445555555444 45788999998887777778888899854321 1222222 56888999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD 192 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 192 (771)
++|.++..+...++|++..++ .+......+ ....|||+|+.+++.......+.. +.
T Consensus 74 ~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~-- 129 (620)
T COG1506 74 LAFVSTDGGRVAQLYLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG-- 129 (620)
T ss_pred EEEEeccCCCcceEEEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc--
Confidence 999985554567888887434 222222333 488899999999994332211100 00
Q ss_pred ccCCCCCC-cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 193 KDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 193 ~~~~~~~~-~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
+...... .+.+..+ | ....+++++|..+ ....+ ......+..+.|.+|++. ++.........
T Consensus 130 -~~~~~~~~~~~~~~~-g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 192 (620)
T COG1506 130 -DHLFVDRLPVWFDGR-G-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDAD--- 192 (620)
T ss_pred -eeeeecccceeecCC-C-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeeccccC---
Confidence 0000000 1111211 1 2468999999887 44444 455556666777777775 66555332200
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
..-...+.... .++....++.....+..+.|.+||+.+++....... .......+
T Consensus 193 -----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~---~~~~~~~~ 247 (620)
T COG1506 193 -----PWVTNLYVLIE-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR---GLAEGDFI 247 (620)
T ss_pred -----CceEeeEEEec-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc---CccccceE
Confidence 00112333332 467788888888889999999999999999887631 11234456
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC
Q 004149 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~ 430 (771)
++++...+..... ..... . .. ......+.-++..++|.... .+...++.++...+....+..
T Consensus 248 ~~~~~~~~~~d~~-------~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 310 (620)
T COG1506 248 LLLDGELGEVDGD-------LSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSG 310 (620)
T ss_pred EEEecccccccee-------eccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecC
Confidence 6666222222110 00000 0 00 01111122345556666665 666777777754554444444
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc-eeeeecccCc
Q 004149 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGV 509 (771)
Q Consensus 431 ~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~ 509 (771)
+.. ....|+.+++.+++..++++.|+++|+.+.. .. ..+ +. ..+ ..+....+ ..+
T Consensus 311 ~~~--~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~~-~~--~~~--~~------~~~----~~~~~~~~~~~e------- 366 (620)
T COG1506 311 DDG--GVPGFDVDGRKLALAYSSPTEPPEIYLYDRG-EE--AKL--TS------SNN----SGLKKVKLAEPE------- 366 (620)
T ss_pred CCc--eEEEEeeCCCEEEEEecCCCCccceEEEcCC-Cc--eEE--ee------ccc----ccccccccCCce-------
Confidence 433 4567777999999999999999999998761 11 111 00 000 00111111 111
Q ss_pred ccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 510 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 510 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.+++...+|.++++|++.|.++++.+++|+||++||||.......+...++.|+.+||+|+.+||||+.|||++|.+...
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~ 446 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIR 446 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhh
Confidence 12556668999999999999988888899999999999887777888899999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
+.++..+.+|+.++++++.+.+.+|++|++|+|+|+||+++++++.+.| .|+++++..+.+++..+....+...+....
T Consensus 447 ~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (620)
T COG1506 447 GDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPE 525 (620)
T ss_pred hccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHH
Confidence 9999999999999999999999999999999999999999999999877 899999999988887776665554433222
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.... .+.. +.+.+...||+.+++++++|+|||||+.|.+||.+|+++|+++|+.+|+++++++||+++|++
T Consensus 526 ~~~~--------~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~ 596 (620)
T COG1506 526 ENGG--------GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596 (620)
T ss_pred HhCC--------Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCC
Confidence 2211 1112 668899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHhC
Q 004149 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
..+++....++.+++||+++|+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 597 SRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred CCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999985
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=1e-41 Score=384.75 Aligned_cols=527 Identities=14% Similarity=0.124 Sum_probs=358.9
Q ss_pred ceEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....|||||++|||..+..+ +..+++.++ .+|... ...+.... ..++|++||+.|+|.......
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~-- 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVT-- 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCC--
Confidence 456789999999999987653 344566666 444311 11111111 368999999999998764210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCC-CCccceEEEec-CCCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPK-SLSVGQVVWAP-LNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~-~~~~~~~~wsp-Dg~~~ 254 (771)
....+||.+++.++ +.+.+ ... +....-..|.+ |++.
T Consensus 196 ------------------------------------~~~~~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~~~- 236 (686)
T PRK10115 196 ------------------------------------LLPYQVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSKHY- 236 (686)
T ss_pred ------------------------------------CCCCEEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCCCE-
Confidence 02368999999988 44445 221 11122234545 8887
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f 333 (771)
+++.+.. +..+.+++++.+. ..++.+.+... ......+ ...+..+++
T Consensus 237 ---l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~~ly~ 284 (686)
T PRK10115 237 ---VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYSL--DHYQHRFYL 284 (686)
T ss_pred ---EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEEE--EeCCCEEEE
Confidence 7644421 2234677777421 23333333322 2222222 234567777
Q ss_pred EecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
.++.. .....|..+++.. ++.+.+.... ++ ..+..+.++ ++.|+++...++.
T Consensus 285 ~tn~~-------~~~~~l~~~~~~~~~~~~~l~~~~-----------~~-------~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 285 RSNRH-------GKNFGLYRTRVRDEQQWEELIPPR-----------EN-------IMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EEcCC-------CCCceEEEecCCCcccCeEEECCC-----------CC-------CEEEEEEEE--CCEEEEEEEeCCE
Confidence 77664 2245688888763 2211111110 00 012334555 5579999999999
Q ss_pred eEEEEEECCCCcEEEecC-CCCCceeeEEe--ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCC-CCCCch
Q 004149 413 QVIISVNVSSGELLRITP-AESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP-ISRCPE 488 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s--~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 488 (771)
..|+.+++.++++..|.. .........++ .+++.+++..+++.+|+++|.+++.+++ ++.++.+ ...
T Consensus 338 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~------~~~l~~~~~~~--- 408 (686)
T PRK10115 338 TSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE------RRVLKQTEVPG--- 408 (686)
T ss_pred EEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc------EEEEEecCCCC---
Confidence 999999988778887763 22222222233 5667899999999999999999976542 1112111 111
Q ss_pred hhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE
Q 004149 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS 568 (771)
Q Consensus 489 ~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~ 568 (771)
+....+....+ .+.+.||.+|+++++.++.....++.|+||++|||++......|....+.|+++||+
T Consensus 409 -----~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~ 476 (686)
T PRK10115 409 -----FDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFV 476 (686)
T ss_pred -----cCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcE
Confidence 11222233333 456778999999666655433456779999999999988788898888999999999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecC
Q 004149 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648 (771)
Q Consensus 569 V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~ 648 (771)
|+.+|+||++++|+.|.+......+..+++|+++++++|++++.+|++|++++|.|+||+++.+++.++|++|+|+|+..
T Consensus 477 v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~v 556 (686)
T PRK10115 477 YAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQV 556 (686)
T ss_pred EEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecC
Confidence 99999999999999999877767777889999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCCCC-cchhhhhccCCCCCcCCCCCC-hhhHHHHhhcCccccccCCCCc-EEEEeeCCCCccCcHHHHH
Q 004149 649 PLCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 649 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~ 725 (771)
|++|+.......+++ .+...+.+|. +. .+..+.+...||+.++.+++.| +||+||.+|.+||+.++.+
T Consensus 557 p~~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 557 PFVDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred CchhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999998765444433 2333344443 32 3445666789999999999999 6778999999999999999
Q ss_pred HHHHHHhCCCCEEEEEe---CCCCccCCCCCChHHHHH---HHHHHHHHHh
Q 004149 726 YARALREKGVETKVIVF---PNDVHGIERPQSDFESFL---NIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~~~---~i~~wl~~~l 770 (771)
++++|++.+.+++++++ +++||+.. .++...++ ....|+-..+
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~~--~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGGK--SGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCCC--cCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888 99999843 33334443 3456665543
No 3
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-34 Score=322.71 Aligned_cols=613 Identities=18% Similarity=0.234 Sum_probs=382.6
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..++|.+.+.+..+....-+........++++.... +.. +...+........|||.|.+++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLH-----PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-ccc-----CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 345677777776654333333444455555554443 011 1111113357899999999999998764 22
Q ss_pred EEe-cCCcceEEEec------CCcccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 128 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~------~~~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.-. ......+++.- -.+..+++|.++.+ ....|||||..++|................... .....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~--- 247 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPK--- 247 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCcc---
Confidence 111 11111112211 12334455554433 366799999999998765433210000000000 00000
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccC----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...+.|... |. ......|+++|........+.. ......+....|.-+.+ +.++-
T Consensus 248 -~~~~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~----------- 306 (755)
T KOG2100|consen 248 -STNFHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVW----------- 306 (755)
T ss_pred -cceeecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEE-----------
Confidence 001111111 11 1134578888855443333110 01122445667777644 44332
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--e--ecCCC---CccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--V--NLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~--~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
.+|.+.+-...+.+ ..+.+ . ..... ......|.++.|+....+...... +
T Consensus 307 --~~r~~~~~~~~~cd---------------~~~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 307 --TNREQNISVETLCD---------------TPGICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred --EccCCCeeeeEEec---------------CcccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222210 00111 0 01111 011135889999865555554431 2
Q ss_pred ccccceeeecCCC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCC
Q 004149 347 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~tg 423 (771)
.-.++..+....+ ..+.++.+...+..+ +.|..++++++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1355666665555 555666666554422 2355788899998886 56778999999998
Q ss_pred cEEEecCCCC----CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc
Q 004149 424 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 499 (771)
Q Consensus 424 ~~~~l~~~~~----~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (771)
....++.... ......++...+.+++.+++|..|.. .+-...... .. .|..| +.+..+.+.+.....
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~-~~--~~~~L-----e~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKN-SK--TIVVL-----ETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeecccccc-ce--EEEEe-----ccChhhHHHhhcccC
Confidence 8887775544 23334556677889999999999975 222222221 11 12222 234444444432222
Q ss_pred eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCC
Q 004149 500 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 576 (771)
Q Consensus 500 ~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~V~~~d~rG 576 (771)
|..+. ....-+|....+.++.|+++++.+++|++|.+||||.+.... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~--~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEF--GKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----Cccee--EEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 21111 111227888999999999998999999999999999743221 12223345678999999999999
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC-CceeEEEecCCccchhh
Q 004149 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 655 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~a~v~~~p~~~~~~ 655 (771)
++++|..++..+++++|..+++|+..+++++.+.+.+|.+||+|+|+|+||+++++++...+ +.|+|+++.+|+.++.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7889999999999987
Q ss_pred hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcE-EEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
++...... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+++++.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 43333222 2223333 2223388888999999998775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++++||+++|++.........+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988877789999999998543
No 4
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-31 Score=273.04 Aligned_cols=339 Identities=19% Similarity=0.268 Sum_probs=258.3
Q ss_pred CEEEEEeeeCC--eeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeee
Q 004149 401 CTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 477 (771)
Q Consensus 401 ~~l~~~~~~~~--~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~ 477 (771)
+.+||....+. ..+||.+... .|++.+++.....+. ..++.+=+.++...++...|+++.++.+..+++.
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~-~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~------ 588 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHS-CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND------ 588 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccc-hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccC------
Confidence 45566665444 3479999887 899999998765333 3466666678888899999999999998765411
Q ss_pred ccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cch
Q 004149 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYS 556 (771)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~ 556 (771)
++.....-..-+++.......-.|.+ .+.+....|..+.|.+|+|.++++.+++|+|++++|||...... .|.
T Consensus 589 ----~l~~q~~~~~~l~~~~~~~Pdy~p~e--if~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfk 662 (867)
T KOG2281|consen 589 ----PLPKQVSFWAILVSGAPPPPDYVPPE--IFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFK 662 (867)
T ss_pred ----cccchhhHHHHHHhcCCCCCccCChh--heeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecccc
Confidence 11100000111111111111111111 12345567899999999999999999999999999999764322 222
Q ss_pred ----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHH
Q 004149 557 ----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTT 631 (771)
Q Consensus 557 ----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~ 631 (771)
.....|+++||.|+.+|-||+.-.|..|...+..+.|..+++|...++++|.++. ++|.+||+|-|+|+||++++
T Consensus 663 gi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSl 742 (867)
T KOG2281|consen 663 GIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSL 742 (867)
T ss_pred ceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHH
Confidence 2355789999999999999998889999888889999999999999999999985 79999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC---CcEE
Q 004149 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPTI 708 (771)
Q Consensus 632 ~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~L 708 (771)
+.++++|+.|+++|+.+|+.+|..+ ......+|++.|. .+...|...|-..++.++. -.+|
T Consensus 743 m~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRLl 806 (867)
T KOG2281|consen 743 MGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRLL 806 (867)
T ss_pred HHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceEE
Confidence 9999999999999999999876533 1122345566663 3345566666666666653 4599
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++||--|.+|.+.+...+..+|-++|++.++++||++.|++..++.....-.+++.|+.+
T Consensus 807 LvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 807 LVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998887777889989876
No 5
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.97 E-value=2.3e-28 Score=263.17 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=215.1
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeC
Q 004149 28 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 107 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 107 (771)
..+|+.++..|.+. +++|+|+....+...+..++.||+++. +++++++||... .....|+||
T Consensus 132 D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wS 193 (428)
T PRK01029 132 DTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWM 193 (428)
T ss_pred HHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEc
Confidence 34667777777766 468899988777666666789999765 566788888765 456789999
Q ss_pred CCCCe--EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 108 PSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~--la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||++ ++|++.+. +..++|.++ .+++.++++...... ..++|||||++|||++...
T Consensus 194 PDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~---------- 252 (428)
T PRK01029 194 HIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY---------- 252 (428)
T ss_pred cCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC----------
Confidence 99998 55688766 678999999 778888888765544 4799999999999987532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE--EEccC---CceeeccCCCCC-CccceEEEecCCCCCccEE
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l 258 (771)
+..++|+ +++.+ ++.+++ +... .....++|||||+. |
T Consensus 253 -------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----L 295 (428)
T PRK01029 253 -------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----L 295 (428)
T ss_pred -------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----E
Confidence 1234555 45554 466777 4433 24468999999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|+++.. ...+||+++++. .++..++|+........|.|||||++|+|.+...
T Consensus 296 af~s~~~------------g~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 296 VFVSNKD------------GRPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEEECCC------------CCceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 9998432 223799998731 2355778887766778999999999999998764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
| ..+|+++|+.+++.++++.... ....+.|+|||+.|+|.+...+...||.+
T Consensus 349 ----g----~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 349 ----G----VRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ----C----CcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEE
Confidence 2 4689999999888766653310 23467899999999998887777899999
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecC
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDG 444 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~ 444 (771)
|+++++.++|+...+....+.|+|-.
T Consensus 401 dl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 401 SLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ECCCCCEEEeecCCCcccCceecCCC
Confidence 99999999998766655667887643
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.97 E-value=4.7e-30 Score=252.43 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=174.6
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35677889999999999999999999999999988888988999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhccCCCCCcCCCCCChhhHHHHhhcCccccccC--CCCcEEE
Q 004149 634 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 709 (771)
Q Consensus 634 a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Li 709 (771)
+.++|++|+++++.+|+.++..+....+. +.. ...++. .....+.+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999987766544333 111 011111 1234566777788888888 8899999
Q ss_pred EeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 710 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+||++|.+||+.++.+++++|++.|++++++++|+++|.+..++...++..++.+||+++||
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
No 7
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.96 E-value=4.1e-26 Score=235.67 Aligned_cols=345 Identities=17% Similarity=0.209 Sum_probs=264.3
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCC
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 470 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~~ 470 (771)
..+.+.+| +|+...-.+...++...+...-..+.|..... .......+.+|+.+++..++.+.|+++|+.++.+.+
T Consensus 300 e~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e- 376 (648)
T COG1505 300 EQVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE- 376 (648)
T ss_pred eeeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-
Confidence 34555544 35554444434456666665544445543322 222223445788999999999999999999987654
Q ss_pred CceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 004149 471 KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 550 (771)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~ 550 (771)
.. .|-++..++ ....+++.+. ..++.||.+|+++++. ++.+.+ +.|++|+-+||....
T Consensus 377 Le-----~ik~~p~~F--------Da~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vs 434 (648)
T COG1505 377 LE-----VIREQPVQF--------DADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNIS 434 (648)
T ss_pred eh-----hhhhccCCc--------CccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccc
Confidence 11 111111111 1223333333 3456788999999998 765555 889999999999988
Q ss_pred CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHH
Q 004149 551 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 630 (771)
Q Consensus 551 ~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a 630 (771)
..+.|......+.++|.+.++.|.||.++||..|++...+....+.++|+.++++.|++++...++++++.|.|.||.++
T Consensus 435 ltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLv 514 (648)
T COG1505 435 LTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLV 514 (648)
T ss_pred cCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEE
Confidence 88899988888899999999999999999999999988777777789999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCC-C-CcEE
Q 004149 631 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-K-TPTI 708 (771)
Q Consensus 631 ~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~-~P~L 708 (771)
..++.++|++|.|+|+..|++||..+........| +..|.....+++...+.++||+.+++.- + +|+|
T Consensus 515 g~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW----------~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~L 584 (648)
T COG1505 515 GAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW----------IAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTL 584 (648)
T ss_pred EeeeccChhhhCceeeccchhhhhhhcccccchhh----------HhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeE
Confidence 99999999999999999999999877554433333 2334445567888899999999998763 3 7899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-HHHHHHHHHHHHHHhC
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~wl~~~l~ 771 (771)
|..+.+|.+|.|.|++.|+.+|++.+.++-+.+--++||+-..+... ......+..||.+.|.
T Consensus 585 ITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999888888899987766554 4456678889998874
No 8
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.96 E-value=1.7e-26 Score=250.12 Aligned_cols=280 Identities=16% Similarity=0.215 Sum_probs=210.0
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.|+..+..-. ++|+|+....+ +.+.+.||+++. ++.+.+++|... ..+..|+
T Consensus 147 ~~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p~ 205 (429)
T PRK03629 147 ASDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPA 205 (429)
T ss_pred HHHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----CceeeeE
Confidence 34457888877766552 57888876543 345788999776 455667787665 4578999
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|+....
T Consensus 206 wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~---------- 264 (429)
T PRK03629 206 WSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT---------- 264 (429)
T ss_pred EcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC----------
Confidence 999999999998654 567788877 666666666554333 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 265 -------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~ 307 (429)
T PRK03629 265 -------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQ 307 (429)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCC
Confidence 235799999999999999 555556788999999999 9999843
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+|+ ++++.++++........|.|||||++|+|.+... |
T Consensus 308 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g- 353 (429)
T PRK03629 308 A------------GRPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G- 353 (429)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC----C-
Confidence 2 1238999998 7788888887666677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|.+..++...|+.++++++.
T Consensus 354 ---~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 354 ---QQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred ---CceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 357999999887765544221 12367899999999999987777789999998777
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++|+...+....+.|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 888875444445566665
No 9
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.95 E-value=3.3e-24 Score=224.79 Aligned_cols=536 Identities=17% Similarity=0.146 Sum_probs=338.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEE-e-cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFEL-W-SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
....+|.+-.|.+...+...-++.- . .++. .+.+++......|.- .-..+.++.|||++.+||+-+..
T Consensus 80 vp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~--f~~Lg~~~~s~D~~~la~s~D~~------- 150 (682)
T COG1770 80 VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHD--FFSLGAASISPDHNLLAYSVDVL------- 150 (682)
T ss_pred CccccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCccc--ceeeeeeeeCCCCceEEEEEecc-------
Confidence 3455777777777665433333333 2 3333 344444432222110 01235889999999999975543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
+..+-.|.+.|+.+|+..... -......++|.+|++. +.|+
T Consensus 151 --------------------------------G~e~y~lr~kdL~tg~~~~d~---i~~~~~~~~Wa~d~~~----lfYt 191 (682)
T COG1770 151 --------------------------------GDEQYTLRFKDLATGEELPDE---ITNTSGSFAWAADGKT----LFYT 191 (682)
T ss_pred --------------------------------cccEEEEEEEecccccccchh---hcccccceEEecCCCe----EEEE
Confidence 224568899999999764431 1113567899999999 9998
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC--ccccceeecCCCCEEEEEecCCC
Q 004149 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
..... .++..||...+... ...-+.+.+.. ....++.=|-..++|+...++.
T Consensus 192 ~~d~~----------~rp~kv~~h~~gt~---------------~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~- 245 (682)
T COG1770 192 RLDEN----------HRPDKVWRHRLGTP---------------GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH- 245 (682)
T ss_pred EEcCC----------CCcceEEEEecCCC---------------CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC-
Confidence 74332 25668888877210 12222222221 1122333344455554443221
Q ss_pred CCCCCccccccceeeecCCCCC--CCCccceeeE---------EecccccCCC-CCcccccCCC----------------
Q 004149 340 VDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDV---------IPVVQCAEGD-CFPGLYSSSI---------------- 391 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~---------~~~~~~~~~~-~f~g~~~~~~---------------- 391 (771)
..+++++++.+..+. +.+......+ .-.+..+.++ .|. +++.-+
T Consensus 246 -------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~-l~~ap~~~~~~~w~~~I~h~~~ 317 (682)
T COG1770 246 -------ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFK-LVRAPVSADKSNWRELIPHRED 317 (682)
T ss_pred -------cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceE-EEEccCCCChhcCeeeeccCCC
Confidence 234555555433322 1111110000 0000000000 110 111100
Q ss_pred -CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCce-eeEEe--ecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 392 -LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 392 -~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~-~~~~s--~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.--.++--.+.|++.-...+...++..+.++++...|..+...+. +...+ .+.+.|.+..+++++|.+++=+++.+
T Consensus 318 ~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t 397 (682)
T COG1770 318 VRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMAT 397 (682)
T ss_pred ceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccC
Confidence 001122233456666667778889999998888888876554221 11222 36788999999999999999999876
Q ss_pred cCCCceeeeeccCCCCCC-CchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCC
Q 004149 468 KANKGTWSWLNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGG 546 (771)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg 546 (771)
++ ...+ . ..+++. ++ +..+....|.+ ...+|..|...++.-++.+-.++.|++++.+|.
T Consensus 398 ~e-r~~L-k---qqeV~~g~d--------p~~Y~s~riwa-------~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGa 457 (682)
T COG1770 398 GE-RTLL-K---QQEVPGGFD--------PEDYVSRRIWA-------TADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGA 457 (682)
T ss_pred Cc-EEEE-E---eccCCCCCC--------hhHeEEEEEEE-------EcCCCcEeeEEEEEecccCCCCCCcEEEEEecc
Confidence 64 1110 0 111221 22 23343333321 235788888878877766677889999999998
Q ss_pred CCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChh
Q 004149 547 PHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHG 626 (771)
Q Consensus 547 ~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~G 626 (771)
.+......|+...--|..+||+......||.++.|+.|.+......-.+.+.|++++.++|++++..++++|+++|.|+|
T Consensus 458 YG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAG 537 (682)
T COG1770 458 YGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAG 537 (682)
T ss_pred ccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCch
Confidence 87777778887666788999999999999999999999987766556678999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCC-
Q 004149 627 GFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK- 704 (771)
Q Consensus 627 G~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~- 704 (771)
|+++..++...|++|+++|+..|++|......-..+|- -.....+|. ....+..+.+...||..++..-.
T Consensus 538 GmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~Y 609 (682)
T COG1770 538 GMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQPY 609 (682)
T ss_pred hHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCCC
Confidence 99999999999999999999999999754433222221 111122332 22456677788999999887744
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC---EEEEEeCCCCccCC
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVE---TKVIVFPNDVHGIE 750 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~~H~~~ 750 (771)
+|+|++.|..|++|...+..++..+|+..+.. +-+..--++||+-.
T Consensus 610 P~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 610 PAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred CceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 67999999999999999999999999987553 34444457899754
No 10
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.95 E-value=2.5e-25 Score=242.68 Aligned_cols=279 Identities=13% Similarity=0.119 Sum_probs=205.7
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEe
Q 004149 27 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 106 (771)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 106 (771)
+..+|+.|+..+.+- ..+|+|+..... .+...+.||+++. ++.+.+++|... ..+..|+|
T Consensus 150 ~d~i~~~ltg~~g~f-----------~~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~w 209 (435)
T PRK05137 150 ADAIYERLTGEKGYF-----------DTRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRF 209 (435)
T ss_pred HHHHHHHHhCCCCcC-----------CCeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEE
Confidence 445888888766443 247888865421 1233678999775 455777887664 56889999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC
Q 004149 107 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 185 (771)
Q Consensus 107 SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 185 (771)
||||++|||++... +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 210 SpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~----------- 267 (435)
T PRK05137 210 SPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG----------- 267 (435)
T ss_pred CCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC-----------
Confidence 99999999998765 557888888 566666666544332 4889999999999975432
Q ss_pred CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecC
Q 004149 186 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.+.
T Consensus 268 ------------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~ 311 (435)
T PRK05137 268 ------------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRS 311 (435)
T ss_pred ------------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCC
Confidence 347899999999999999 555545667999999999 99988432
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
...+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 312 ------------g~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~------- 355 (435)
T PRK05137 312 ------------GSPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG------- 355 (435)
T ss_pred ------------CCCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-------
Confidence 2248999998 7888889987766677899999999999998653
Q ss_pred cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe---eEEEEEECCC
Q 004149 346 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSS 422 (771)
Q Consensus 346 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~---~~l~~~d~~t 422 (771)
+..+|+++|+.++..+.++.+. ....+.|||||+.|+|.+...+. ..||.+++++
T Consensus 356 -~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 356 -GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred -CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 1467999998766554433211 13467899999999998875544 5899999998
Q ss_pred CcEEEecCCCCCceeeEEee
Q 004149 423 GELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 423 g~~~~l~~~~~~~~~~~~s~ 442 (771)
++.++++. .+....+.|+|
T Consensus 414 ~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 414 RNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred CceEEccC-CCCccCcccCC
Confidence 88888764 33345566664
No 11
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=6.4e-25 Score=238.63 Aligned_cols=279 Identities=16% Similarity=0.173 Sum_probs=205.0
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEe
Q 004149 27 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVP 106 (771)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~ 106 (771)
+..+|+.|+-.+.+.. .+|+|...... +...+.||+++. ++.+.++++... ..+..|+|
T Consensus 167 ~d~i~~~ltG~~g~f~-----------~riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~w 225 (448)
T PRK04792 167 SDIVYEKLTGERGAFL-----------TRIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAW 225 (448)
T ss_pred HHHHHHHhcCCCcccc-----------CEEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCceE
Confidence 4457888877766653 35677665432 234567888664 455667777665 45788999
Q ss_pred CCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC
Q 004149 107 SPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 185 (771)
Q Consensus 107 SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 185 (771)
||||++|+|++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 226 SPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~----------- 283 (448)
T PRK04792 226 SPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD----------- 283 (448)
T ss_pred CCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC-----------
Confidence 99999999998764 667899988 666666666543322 4789999999999975432
Q ss_pred CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecC
Q 004149 186 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++...
T Consensus 284 ------------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~ 327 (448)
T PRK04792 284 ------------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERG 327 (448)
T ss_pred ------------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCC
Confidence 346899999999999998 454445678999999999 99987432
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004149 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
...+||.+|+ ++++.++|+.......+|.|||||++|+|.+...
T Consensus 328 ------------g~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~------- 371 (448)
T PRK04792 328 ------------GKPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN------- 371 (448)
T ss_pred ------------CCceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC-------
Confidence 2248999998 7788888875544556799999999999987653
Q ss_pred cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004149 346 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 346 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++..++...||.++.+++..
T Consensus 372 -g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 372 -GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred -CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 2467999999887765543321 112568999999999999888888899999977777
Q ss_pred EEecCCCCCceeeEEee
Q 004149 426 LRITPAESNFSWSLLTL 442 (771)
Q Consensus 426 ~~l~~~~~~~~~~~~s~ 442 (771)
++++...+....+.|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 77766545455566665
No 12
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.1e-24 Score=237.32 Aligned_cols=281 Identities=15% Similarity=0.119 Sum_probs=204.8
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.++..+.+- +.+|+|+.... ..+...+.||+++. ++.+.++++... ..+..|+
T Consensus 151 ~~d~i~~~~tg~~g~f-----------~~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~ 210 (433)
T PRK04922 151 IADAIYEKITGVPGAF-----------WTRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPA 210 (433)
T ss_pred HHHHHHHHHcCCCCcc-----------cceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----Ccccccc
Confidence 3455777777655432 24678876543 22335678888775 455677787664 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 211 wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~---------- 269 (433)
T PRK04922 211 WSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD---------- 269 (433)
T ss_pred CCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC----------
Confidence 999999999998754 567888888 566666665543222 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+++ +........+.|||||++ |+|++.+
T Consensus 270 -------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~ 312 (433)
T PRK04922 270 -------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDR 312 (433)
T ss_pred -------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999999988 444444567899999999 9999843
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
.+ ..+||.+++ .+++.++++........|.|||||++|+|.+...
T Consensus 313 ~g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~------ 357 (433)
T PRK04922 313 GG------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG------ 357 (433)
T ss_pred CC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC------
Confidence 22 237999998 7788888886555566899999999999987643
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++.
T Consensus 358 --~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 358 --GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred --CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 2358999999887766554321 12356899999999999988788899999998877
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++++...+....+.|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 788875544444555554
No 13
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.4e-24 Score=235.45 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=200.8
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.++..+..-. .+|+|.... ...+.||.++. ++...++++... ..+..|
T Consensus 146 ~~~d~i~~~~tg~~g~f~-----------~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p 201 (427)
T PRK02889 146 RIADYIYEKLTGERGVFS-----------TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISP 201 (427)
T ss_pred HHHHHHHHHhcCCCcccc-----------cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccc
Confidence 334556766655543321 368887632 23568888765 455666776554 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|..+ .+++..+++...... ..+.|||||++|+|.....
T Consensus 202 ~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 261 (427)
T PRK02889 202 AWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD--------- 261 (427)
T ss_pred eEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc----------cceEECCCCCEEEEEEccC---------
Confidence 9999999999998754 567788888 566666665543322 4899999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+.+++.+++ +........+.|||||++ |+|+++
T Consensus 262 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~ 303 (427)
T PRK02889 262 --------------------------------GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSD 303 (427)
T ss_pred --------------------------------CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEec
Confidence 347899999999998888 454445667899999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .++..++++........|.|||||++|+|.+... |
T Consensus 304 ~~g------------~~~Iy~~~~-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g 350 (427)
T PRK02889 304 RGG------------APQIYRMPA-----------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG----G 350 (427)
T ss_pred CCC------------CcEEEEEEC-----------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC----C
Confidence 321 237999998 6777777775555566899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004149 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.++++... ....+.|+|||+.|+|.+..++...|+.++++++
T Consensus 351 ----~~~I~v~d~~~g~~~~lt~~~---------------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 351 ----AFKLYVQDLATGQVTALTDTT---------------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred ----cEEEEEEECCCCCeEEccCCC---------------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 357999999887765554321 1246789999999999998888888999999665
Q ss_pred cEEEecCCCCCceeeEEee
Q 004149 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 5666665445455566665
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.94 E-value=1.5e-24 Score=231.68 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=187.0
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 004149 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~ 132 (771)
+++|...... .+.+.||+.|. ++.+.++++.+. ....|+|||||++ ++|++..+ +..++|.++ .+
T Consensus 156 r~~~v~~~~~----~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYTG----PKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEccC----CCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 5666554211 23678999765 455666676552 3668999999997 66666653 567899999 67
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004149 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
++.++++...... ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 7777777643322 4688999999999986432
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC-----
Confidence 347999999999999999 554444557899999999 99998542 2248999999
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++++.++++.... ..+.|||||++|+|.........+ ....+|+++|+++++.++++...
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~---- 368 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANG---- 368 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCC----
Confidence 8888888886533 246999999999999976421100 12368999999998877765432
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|||||+.|+|.+..++...|+.+++++....++....+
T Consensus 369 -----------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 -----------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -----------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 12357899999999999888788889999998777777765444
No 15
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.93 E-value=5.9e-24 Score=232.60 Aligned_cols=281 Identities=16% Similarity=0.183 Sum_probs=203.5
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.|+..+.. | .++|+|.....+. +...+.|++++. ++.+.++++... ..+..|+
T Consensus 146 i~d~i~~~ltg~~g~-----f------~~~ia~v~~~~~~--~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~ 205 (430)
T PRK00178 146 ISDQSFEKLTGIKGA-----F------STRILYVTAERFS--VNTRYTLQRSDY--DGARAVTLLQSR-----EPILSPR 205 (430)
T ss_pred HHHHHHHHHhCCCcc-----c------eeeEEEEEeeCCC--CCcceEEEEECC--CCCCceEEecCC-----Cceeeee
Confidence 345578888766543 2 2468887654432 224557888665 445666776554 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 206 wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~---------- 264 (430)
T PRK00178 206 WSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD---------- 264 (430)
T ss_pred ECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC----------
Confidence 999999999998765 567898888 666666665443222 4789999999999975432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 265 -------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~ 307 (430)
T PRK00178 265 -------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDR 307 (430)
T ss_pred -------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECC
Confidence 236899999999999988 555445677899999999 9999743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+++ .+++.++++........|.|||||++|+|..... |
T Consensus 308 ~------------g~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~- 353 (430)
T PRK00178 308 G------------GKPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD----G- 353 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC----C-
Confidence 2 2248999998 7788888876555566799999999999998653 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|++...+...||.++++++.
T Consensus 354 ---~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 354 ---NFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred ---ceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 457999999988765554321 11256899999999999988888889999997766
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.+++....+....+.|++
T Consensus 410 ~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 410 RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEECcCCCCCcCCCccCC
Confidence 667765444444555654
No 16
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-22 Score=208.59 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=225.5
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceE
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPF 521 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l 521 (771)
-+...+.|..+++-+|+.+|.+|+..+.-... ...+++..++.+ ....+.+..+ .+.+.||..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~-vf~e~~~~lpg~--------~~s~y~~~r~-------~~~SkDGt~V 454 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPS-VFREITVVLPGF--------DASDYVVERI-------EVSSKDGTKV 454 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCc-ceeeeccccCcc--------cccceEEEEE-------EEecCCCCcc
Confidence 35678999999999999999999987641111 112333222211 1222333333 3456677777
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
...++..+..+-.++.|++++.||+.+......|...-..|..+|++....|.||.|++|..|++......-.+.++|++
T Consensus 455 PM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfi 534 (712)
T KOG2237|consen 455 PMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFI 534 (712)
T ss_pred ceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHH
Confidence 77788776666677899999999988877666776655556679999999999999999999998877666677899999
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh-hhhccCCCCCcCC
Q 004149 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (771)
+++++|+++++..+++.++.|.|.||.++..++.++|++|+|+|+..|+.|+......+..+-|.. .+.++
T Consensus 535 a~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g-------- 606 (712)
T KOG2237|consen 535 ACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWG-------- 606 (712)
T ss_pred HHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccC--------
Confidence 999999999999999999999999999999999999999999999999999987766666665531 12222
Q ss_pred CCCChhhHHHHhhcCccccccCCC-----CcEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCCEEEEEeCCCCcc
Q 004149 681 ESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i~-----~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~ 748 (771)
.+++...+...+|+..+++++ +-+|+..+.+|.+|++.++..+.+.|+.. ..++-+.+..++||+
T Consensus 607 ---~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~ 683 (712)
T KOG2237|consen 607 ---NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHG 683 (712)
T ss_pred ---ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccc
Confidence 234556666666766666554 34899999999999999999999998864 135778899999998
Q ss_pred CCCCCC-hHHHHHHHHHHHHHHh
Q 004149 749 IERPQS-DFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~-~~~~~~~i~~wl~~~l 770 (771)
...+.. ..+-.....+||.+.+
T Consensus 684 ~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 684 AEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cCCchHHHHHHHHHHHHHHHHHh
Confidence 754322 2223344666776654
No 17
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=8.1e-23 Score=222.13 Aligned_cols=273 Identities=13% Similarity=0.141 Sum_probs=191.7
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004149 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+.++|+.|+..+.+- +++|+|+....+ +.+.+.||+++.+ +.+.++++... ..+..|+
T Consensus 152 ~~d~i~~~ltg~~g~f-----------~~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p~ 210 (429)
T PRK01742 152 VSDEVFEKLTAIRGAF-----------RTRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSPA 210 (429)
T ss_pred HHHHHHHHHcCCCCcc-----------CCEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----Cccccce
Confidence 3445778887766654 357888876544 2345788987763 44556666544 4578899
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
|||||++|||++..+ +..+++.++ .+++.+.+....... ..++|||||++|+|.....
T Consensus 211 wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~---------- 269 (429)
T PRK01742 211 WSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD---------- 269 (429)
T ss_pred EcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC----------
Confidence 999999999998754 556788777 555555555443322 4789999999999975422
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+
T Consensus 270 -------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~ 312 (429)
T PRK01742 270 -------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDR 312 (429)
T ss_pred -------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECC
Confidence 235799999999999998 555556778999999999 9999743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.++. .++..+.++. .. ..+.|||||++|+|.+..
T Consensus 313 ~------------g~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~------- 353 (429)
T PRK01742 313 S------------GSPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD------- 353 (429)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC-------
Confidence 2 2238999997 5566666643 22 468999999999998642
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.|+++|+.++....++... ....+.|+|||+.|++.+..++...++.++.+++.
T Consensus 354 -----~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~ 407 (429)
T PRK01742 354 -----NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF 407 (429)
T ss_pred -----CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3788998887654332211 12357899999999988876555567777877777
Q ss_pred EEEecCCCCCceeeEEee
Q 004149 425 LLRITPAESNFSWSLLTL 442 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~ 442 (771)
.++|....+....+.|+|
T Consensus 408 ~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 408 KARLPGSDGQVKFPAWSP 425 (429)
T ss_pred eEEccCCCCCCCCcccCC
Confidence 777865545455566765
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=6.8e-23 Score=223.60 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=186.9
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
-..+|||+++..++ ..++|.++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999876532 45788777 566666676543333 5899999999999986542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+|+.+++ +........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEe--ecCCCcccCcEECCCCCE----EEEEEec
Confidence 347999999999998888 444445668899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .+.+||++|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g- 312 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----G- 312 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC----C-
Confidence 2 3358999998 8888999998877788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...|+.++++++.
T Consensus 313 ---~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 313 ---SPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ---CCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 468999998877665554221 023457899999999998866666789999998888
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCC--CeEEEEEeccc
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p--~~l~~~~~~~~ 468 (771)
.+.++... ....+.|+|||+.|+++....... ..||+.++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77776543 345678999999999998766553 57999887544
No 19
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.2e-22 Score=217.02 Aligned_cols=239 Identities=11% Similarity=0.058 Sum_probs=180.5
Q ss_pred CeEEEEecC-CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 187 (771)
.++||+... .....+++.++ ++.+.+.++... .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 467777653 32367899888 555555555532 21 48999999997 66665432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+...
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~--- 253 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAP--- 253 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEcc---
Confidence 247999999999999999 444444567899999999 9998742
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
+.+.+||++|+ .+++.++||........|.|||||++|+|.+++. |
T Consensus 254 ---------~g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g---- 299 (419)
T PRK04043 254 ---------KGQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----G---- 299 (419)
T ss_pred ---------CCCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC----C----
Confidence 23458999998 7888999998777677899999999999999874 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECC
Q 004149 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 421 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~------~~~~l~~~d~~ 421 (771)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999988876654321 11247999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|+.++|+.... ...+.|+|||+.|+|+... ..-..|+..++...
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3458999999999999765 44456888887543
No 20
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=1.2e-22 Score=218.98 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=181.7
Q ss_pred EEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe--EEEEecCCC
Q 004149 104 VVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPS 175 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~--la~~~~~~~ 175 (771)
+.++ +++|||+....+ ...++|+++ ++++.++++...... ..|.|||||++ ++|++...
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~- 208 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL- 208 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-
Confidence 4555 999999987542 145799998 777788887643333 48999999998 55576543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+.++||++++++|+.+++ +........+.|||||++
T Consensus 209 ----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~-- 244 (428)
T PRK01029 209 ----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL-- 244 (428)
T ss_pred ----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE--
Confidence 347999999999999998 444445667999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEE--ecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~ 332 (771)
|+|++...+ ..+||.. +++. ..++..++++... .....|+|||||++|+
T Consensus 245 --Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 245 --LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred --EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 999984322 2256664 4410 0135667888654 3467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|.+.+. | ..+||++++.+.+ .++++... .....+.|||||+.|+|.....
T Consensus 297 f~s~~~----g----~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 297 FVSNKD----G----RPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEECCC----C----CceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCC
Confidence 998764 2 4579999885422 22232111 0234678999999999988777
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+..+|+.+|+++|+.++++........+.|++||+.|++..... ....||+.++.++
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 77789999999999999987654456688999999999987654 3467998887654
No 21
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=5.8e-22 Score=214.74 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=181.3
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+....++ ..++++++ ++.+.++++...... ..++|||||++|+|++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999875322 45677777 555666776643233 5899999999999986432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+..+||++|+.+|+.+.+ +........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l--~~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEc--cCCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 347899999999998888 433334567999999999 99986322
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...+||++|+ ++++.++++.....+..|.|||||++|+|.+.+. |
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g---- 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----G---- 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----C----
Confidence 2347999998 7888999998777788999999999999999764 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...||.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999887654443211 012457899999999998877777789999999999999
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
|+.... ...+.|+|||+.|++...... ...+++.++..
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986432 345789999999999887443 34577777643
No 22
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=9.7e-22 Score=213.35 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=179.4
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004149 111 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+|||+.... +..+++.++ ++...++++...... ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 556788777 444556665443333 5899999999999986532
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004149 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
..++||++|+.+|+.+++ +........++|||||+. |+|+...
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~----- 260 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVV--ANFKGSNSAPAWSPDGRT----LAVALSR----- 260 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEEcc-----
Confidence 347899999999998888 333344568999999999 9997632
Q ss_pred eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 270 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
+...+||.+|+ .++..++|+.......+|.|||||++|+|.+++. | ..
T Consensus 261 -------~g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g----~~ 308 (427)
T PRK02889 261 -------DGNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----G----AP 308 (427)
T ss_pred -------CCCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----C----Cc
Confidence 23358999998 7778889988776678899999999999998764 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||.+++.++..++++... . ....+.|||||+.|++.+...+..+|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998776544332110 0 1235789999999999887666778999999999999888
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 430 ~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.... ...+.|++||+.|++....... ..+++.++.
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 6533 3567999999999999876654 568877763
No 23
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=2.8e-21 Score=210.19 Aligned_cols=241 Identities=16% Similarity=0.189 Sum_probs=178.9
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004149 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3578888765422 34666666 455566666554333 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004149 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~l--t~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKV--TSFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEe--cCCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 237899999999998888 333334557899999999 99986432
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||++|+ ++++.++|+........|.|||||++|+|.+.+. |
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g--- 328 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----G--- 328 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C---
Confidence 2348999998 8888899988766778899999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||++|+.+++.++++... . ....++|||||+.|+|.....+..+||.+|+++++.+
T Consensus 329 -~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 329 -KPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 468999999887755443111 0 1234689999999999887677778999999999998
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.++....+ ..+.|+|||+.|++..... ....||+.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~-g~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQ-GKQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECC
Confidence 88765332 3468999999999888654 34568887764
No 24
>PRK13604 luxD acyl transferase; Provisional
Probab=99.88 E-value=2.8e-21 Score=192.10 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=152.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 592 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~-~~~g~~~~~~~~~~~ 592 (771)
...+|..|.||+..|++. ..++.++||++||..... ..+...+.+|+++||.|+.+|+||. |++++.+....
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 455799999999999742 346678999999966542 3477889999999999999999875 55544432111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
......|+.++++|+.++. .++|+|+||||||.+++.+|.. + .++++|+.+|+.++.......-...+.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998863 4689999999999998766664 2 489999999999865333210000000000000
Q ss_pred CCCCCcCCCCCCh--hhHHH------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 673 SKGKDSFTESPSV--EDLTR------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 673 ~~~~~~~~~~~~~--~~~~~------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
....-.+.+.... ..... ....+|+..+.+++.|+|++||+.|..||++.+++++++++. .+.+++.+||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 0000001011110 11111 113456677888899999999999999999999999998764 3589999999
Q ss_pred CCccCC
Q 004149 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
++|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999986
No 25
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=6.5e-21 Score=207.70 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=179.8
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
=+++|||++...++ ..++++++ ++...++++...... ..+.|||||++|+|++...
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~---------- 225 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER---------- 225 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC----------
Confidence 35679998765322 23466555 455566666543333 5899999999999986432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+...
T Consensus 226 -------------------------------~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~----l~~~~s~ 268 (433)
T PRK04922 226 -------------------------------GRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRR----LALTLSR 268 (433)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCE----EEEEEeC
Confidence 347899999999998888 333334557899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .+.+||++|+ .+++.++++.......+|.|||||++|+|.+.+. |
T Consensus 269 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g- 314 (433)
T PRK04922 269 D------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----G- 314 (433)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C-
Confidence 2 3348999998 7888899987766677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... . ....++|||||+.|++.....+..+|+.+|+.+++
T Consensus 315 ---~~~iy~~dl~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 315 ---RPQIYRVAASGGSAERLTFQG-----------------N---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ---CceEEEEECCCCCeEEeecCC-----------------C---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 358999999887655443211 0 12357899999999998766666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~ 467 (771)
.+.++.... ...+.|++||+.|++..... .-..||+.++..
T Consensus 372 ~~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 998886543 34578999999999988763 345788887643
No 26
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=7.2e-21 Score=208.23 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=179.4
Q ss_pred CCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 109 SGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
..++|||++.... +..+++.++ ++++.+.++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 4567999876432 233566666 455555665543332 5899999999999986532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
...+||++|+.+|+.+.+ +........+.|||||++ |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l--~~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQI--TNFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEc--cCCCCCcCCeEECCCCCE----EEEEEcc
Confidence 347899999999999888 433334557999999999 9998743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ .+++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g- 309 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----G- 309 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888889988777788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|+|.....+...|+.+|+.+++
T Consensus 310 ---~~~iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 310 ---KPQIYKVNVNGGRAERVTFVG--------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 468999999887754443111 012356899999999998876667789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+.|+..... ..+.|++||+.++++...... ..|++.++.
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~ 406 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSIN 406 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECC
Confidence 9999875433 357899999999998865443 457877764
No 27
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.88 E-value=4.2e-20 Score=202.21 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=183.0
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 004149 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 131 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~ 131 (771)
+.+++|..... +...+.||+++. .+.+.++++... .....|+|||||++|||+.... +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677775433 235678888765 344667776553 3477899999999999987654 556788777 5
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004149 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
++....+....... ..++|||||+.|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 4789999999999975432
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...+||++|+.+++.+.+ +........+.|+|||++ |+|++.+.. ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 336899999999998888 444444567899999999 999874321 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.++++........|.|||||++|+|..... ...+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 7777888887666778899999999999998753 2467999999876544333211
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|+|||+.|++.+..++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999988777788888876666666765433
No 28
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.87 E-value=3.9e-21 Score=203.31 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=213.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.+.+..+....-+......++++++... +.++++.. ......+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-----PPKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-----ETTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-----ccccccceeecCCCeeEEEecCc-----eEEE
Confidence 689999999888776666667788899887443 44555433 24578999999999999998765 8888
Q ss_pred e-cCCcceEEEecC-----CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC-
Q 004149 130 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK- 199 (771)
Q Consensus 130 ~-~~~~~~~~~~~~-----~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 199 (771)
. .++..+++|.-. .+..+.+|.++ ....+.|||||++|||...+......+.......... .+.
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~ 142 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPE 142 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-E
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCc
Confidence 7 566667777532 12233444443 3358899999999999986654332111110000000 000
Q ss_pred -CcccccCCcCcccCCccCceEEEEEccCCceeeccCC----CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004149 200 -GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 200 -~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
..+.| |.-|.. .....|+++|+++++...+... +.+..+..+.|++|++. |++......
T Consensus 143 ~~~~~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~-------- 206 (353)
T PF00930_consen 143 VESIRY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRD-------- 206 (353)
T ss_dssp EEEEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETT--------
T ss_pred cccccc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccC--------
Confidence 01111 111211 1345899999999987665311 23456788999999996 666532111
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---CCc--cccceeec-CCCCEEEEEecCCCCCCCCcccc
Q 004149 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~--~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
+....|+.+|+ .++..+.+.. ... ....+.|. ++|..++|++.++ | .
T Consensus 207 --q~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~----G----~ 259 (353)
T PF00930_consen 207 --QNRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD----G----Y 259 (353)
T ss_dssp --STEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT----S----S
T ss_pred --CCEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC----C----C
Confidence 22346778887 5555443321 111 13355665 9999999999864 3 6
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECC-CCcE
Q 004149 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVS-SGEL 425 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~l~~~d~~-tg~~ 425 (771)
.+|++++..++..+++|.+..++.. ...|.++++.|+|.+.. ....+||+++++ ++++
T Consensus 260 ~hly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 260 RHLYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp EEEEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred cEEEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 7899999999888888887766543 23688899999999985 357799999999 9999
Q ss_pred EEecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 426 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 426 ~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
++||..........||+++++++..+++++.|+
T Consensus 321 ~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 321 KCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 999988775557899999999999999999985
No 29
>PRK10566 esterase; Provisional
Probab=99.87 E-value=5.9e-21 Score=193.15 Aligned_cols=231 Identities=16% Similarity=0.172 Sum_probs=151.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC-ChhhhhcCCCCc--cccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~-g~~~~~~~~~~~--~~~~~ 597 (771)
+....|.|.+ ..+++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+.. +..........+ .....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 3345666763 124567999999997655 33577788899999999999999995421 000000000000 11236
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecC-CccchhhhhcCCCCCcchhhhhccCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
+|+.++++++.+++.++.++|+++|||+||++++.++.++|+...++++.. +... ...... .+ ..... ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-----~~~~~-~~ 159 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTL-FP-----PLIPE-TA 159 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHh-cc-----ccccc-cc
Confidence 778888899988877899999999999999999999998887544433322 2111 110000 00 00000 00
Q ss_pred CcCCCCCChhhHHHHhhcCccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCC
Q 004149 677 DSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~ 753 (771)
.... ........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|.+ +++.++++++|.+.
T Consensus 160 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~--- 234 (249)
T PRK10566 160 AQQA--EFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT--- 234 (249)
T ss_pred ccHH--HHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---
Confidence 0000 000111122334455556666 699999999999999999999999999998864 78999999999875
Q ss_pred ChHHHHHHHHHHHHHHh
Q 004149 754 SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 ~~~~~~~~i~~wl~~~l 770 (771)
.+.+..+.+||+++|
T Consensus 235 --~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 --PEALDAGVAFFRQHL 249 (249)
T ss_pred --HHHHHHHHHHHHhhC
Confidence 367899999999876
No 30
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.87 E-value=4.3e-21 Score=184.04 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=172.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+..|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++| +|.+......-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccC---CCcCCCCcccCC
Confidence 3456678889999999963 346788999999965432 3467778999999999999999999 444432111212
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------------cC
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 659 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------~~ 659 (771)
-....++|+...++.+..+.....-..+++||||||.+++.++.++|..+.++|+.+|.+-+..-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 223347888888888877655555678999999999999999999999999999999987542111 01
Q ss_pred CCCCcchhhhhccC---------------CCCCcCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 660 TDIPDWCYVESYGS---------------KGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
.-+|.|.....-.. .....+.+.+.......+.+. ....++.++..|+||+||+.|.+..+..
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 11233331111000 000011111111111111111 1224578899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~wl~~~ 769 (771)
+++||+..... +.++.+|||+-|.+. .+++...++..|++||+++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999988765 467779999999987 3666778899999999875
No 31
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.87 E-value=1.6e-20 Score=198.17 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=158.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.++++..+.|.+ .....++||++||.+... ...+...+..|+++||.|+++|+||. |.+.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rGh---G~S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEGH---GRSEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCCC---CCCCCccccCCC
Confidence 344578999998888753 224568999999975432 22445566788899999999999994 443211110011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcch------
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~------ 666 (771)
....++|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122367889999998765334456799999999999999999999999999999998754321100 0000
Q ss_pred hhhhccCC--------CCC-----------------cCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccC
Q 004149 667 YVESYGSK--------GKD-----------------SFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~--------~~~-----------------~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp 719 (771)
....+... ... .+...+.......+... .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 000 00000000000000000 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHHh
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 770 (771)
++.++.+++.+... ..+++++++++|.+...+. ...+...+.+||++++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887542 3688899999999764322 2457788999999876
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=99.87 E-value=7.1e-21 Score=195.80 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=158.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|..+.+.+|.|. ..+.++|+++||.+.. ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G~---G~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIGH---GRSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCCC---CCCCCccCCcCC
Confidence 34558889999999884 2455889999997654 55788889999999999999999994 443211111011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------------hcC
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~ 659 (771)
....++|+...++++.+.. ...+++|+|||+||.+++.++.++|++++++|+.+|..+.... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1123567777777765542 3467999999999999999999999999999999997642110 000
Q ss_pred CCC-Ccch---hh----h--hccCCCCCcCCCCCChhhHHHHhhc--CccccccCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004149 660 TDI-PDWC---YV----E--SYGSKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 660 ~~~-~~~~---~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~ 727 (771)
... ..+. .. + .+...... ................ .....+.++++|+|+++|++|.++|++.+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLV-NHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCc-cCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 000 0000 00 0 00000000 0000000000000000 112346788999999999999999999999988
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHHh
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~l 770 (771)
+.+.. ++++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87643 4789999999999876533 6789999999999864
No 33
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.87 E-value=2.4e-20 Score=197.29 Aligned_cols=270 Identities=16% Similarity=0.170 Sum_probs=196.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
..+..+|+.++.++......+ +|.... ..+...+++++.|- ++.....++... .....|
T Consensus 140 ~~ad~~~e~lt~~~g~~~~~i-----------~~v~~~---~~~~~~~~l~~~D~--dg~~~~~l~~~~-----~~~~~p 198 (425)
T COG0823 140 TIADAIYEKLTGIKGAFDTRI-----------AYVAES---DGGPLPYELALGDY--DGYNQQKLTDSG-----SLILTP 198 (425)
T ss_pred hhhhhhhhhhcCCcceecceE-----------EEEeec---ccCCCCceEEEEcc--CCcceeEecccC-----cceecc
Confidence 445567777777776664433 342211 23445677888654 344555555554 346779
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.|||||++++|+.-..++..+++.+. ..+...+++...... ..++|||||++|+|...+.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~----------~~P~fspDG~~l~f~~~rd--------- 259 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN----------GAPAFSPDGSKLAFSSSRD--------- 259 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc----------CCccCCCCCCEEEEEECCC---------
Confidence 99999999999987664447888888 667767777654333 5899999999999987654
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+.++...+| +........+.|||||++ |||++.
T Consensus 260 --------------------------------g~~~iy~~dl~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sd 301 (425)
T COG0823 260 --------------------------------GSPDIYLMDLDGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSD 301 (425)
T ss_pred --------------------------------CCccEEEEcCCCCcceec--ccCCccccCccCCCCCCE----EEEEeC
Confidence 458999999999998888 555555669999999999 999985
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004149 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||++++ +++..+++|...+....|.|||||++|+|.+... |
T Consensus 302 r~G------------~p~I~~~~~-----------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~----g 348 (425)
T COG0823 302 RGG------------RPQIYLYDL-----------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG----G 348 (425)
T ss_pred CCC------------CcceEEECC-----------------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccC----C
Confidence 433 238999998 8888899999888877999999999999999542 2
Q ss_pred CccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 344 AHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
...+...|+.++.. +.++... ....++|++||+.|+|.+...+...|+.+...+
T Consensus 349 ----~~~i~~~~~~~~~~~~~lt~~~---------------------~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 349 ----QWDIDKNDLASGGKIRILTSTY---------------------LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred ----ceeeEEeccCCCCcEEEccccc---------------------cCCCCCcCCCCceEEEeccCCCCceEEEeeccc
Confidence 26688888877663 2222221 235778999999999998888778898888744
Q ss_pred CcEEEecC
Q 004149 423 GELLRITP 430 (771)
Q Consensus 423 g~~~~l~~ 430 (771)
.....+..
T Consensus 404 ~~~~~~~~ 411 (425)
T COG0823 404 RVSRPLPL 411 (425)
T ss_pred eeEEEEec
Confidence 43434433
No 34
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.86 E-value=2e-20 Score=198.61 Aligned_cols=249 Identities=15% Similarity=0.159 Sum_probs=157.2
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+.+|.++.+..+.|. ..+..|+||++||.+... ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~---G~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGF---GLSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCC---CCCCCCCCCcCC
Confidence 34567899999998886 234568999999965432 12345677889899999999999994 443211000001
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC------------C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~------------~ 660 (771)
....++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1123567777777776543344568999999999999999999999999999999986542110000 0
Q ss_pred CCCcchhh------hh-ccCC--------CCCcCCCCCCh-hhHHHHhhc-CccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 661 DIPDWCYV------ES-YGSK--------GKDSFTESPSV-EDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~------~~-~~~~--------~~~~~~~~~~~-~~~~~~~~~-sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
..+.+... .. +... ....+...... .....+... .....+.++++|+|++||++|.++|++.+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 00000000 00 0000 00000000000 001111111 11234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHHh
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~wl~~~l 770 (771)
+.+++.+.. .+.+++++++++|.+...+. ...++..+.+||++++
T Consensus 299 ~~l~~~~~~--~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASS--SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCC--CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 998887753 23688899999999874433 2347889999999875
No 35
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=2.9e-19 Score=194.39 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=164.2
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004149 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
+++|||++...++ ...+++.+ ++...+.++...... ..+.|||||++|+|++...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6889999875432 24555555 444544444433223 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004149 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
...+||++|+.+++.+.+. ........++|||||+. |+|++...
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 33333457899999999 99986322
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||.+|+ .++..++|+.......+|.|||||++|+|.+.+. |
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g--- 314 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS----G--- 314 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC----C---
Confidence 2237999998 7788899998777788999999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||.++..++....++. . . ..+.|||||+.|++... ..++.+|+.+|+.+
T Consensus 315 -~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 315 -SPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred -CceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 4689998876654322210 0 1 24579999999988754 35788999999988
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
.++... ....+.|+|||+.|++..... .-..+++.+
T Consensus 367 ~lt~~~-~~~~~~~sPdG~~i~~~s~~g-~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTF-LDESPSISPNGIMIIYSSTQG-LGKVLQLVS 402 (429)
T ss_pred EecCCC-CCCCceECCCCCEEEEEEcCC-CceEEEEEE
Confidence 887543 234578999999999887533 333344444
No 36
>PLN02442 S-formylglutathione hydrolase
Probab=99.84 E-value=1e-19 Score=185.72 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=151.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCC--CC----------C
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--GF----------G 581 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~rG~~--~~----------g 581 (771)
-|..+.+.+|.|+. ...+++|+|+++||.+... ..|. .....++..||.|++||..+.+ .. +
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35678889999983 3457899999999976543 2232 2345667889999999975422 00 1
Q ss_pred hhhh-hcCCCCcc-----ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 582 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
..+. +.....+. ....+++...++.... .++.++++|+|+||||++++.++.++|++|+++++.+|+++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 00000110 1112333333333222 26889999999999999999999999999999999999876431
Q ss_pred hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCC
Q 004149 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~~~~~l~~~g 734 (771)
. .+.. .. ...+.+.+ ....+.+...+++..+...++|+|++||++|.+++.. +++.+++++++.|
T Consensus 183 ~-------~~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0100 00 00111111 2334444455566666677899999999999999863 5789999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
.++++.++|+.+|.+. ....++++.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999865 223445555666666654
No 37
>PRK10749 lysophospholipase L2; Provisional
Probab=99.83 E-value=6.4e-19 Score=185.22 Aligned_cols=248 Identities=19% Similarity=0.231 Sum_probs=155.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445567888988887653 234789999996543 3356677778889999999999999554432110000011
Q ss_pred c--cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh------------
Q 004149 592 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------ 657 (771)
Q Consensus 592 ~--~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~------------ 657 (771)
. ...-++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.+|........
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 112245666666655443 245789999999999999999999999999999999865321000
Q ss_pred -cCCCC--------CcchhhhhccCCC-----------CCcCCCCC-------ChhhHHHHhhc--CccccccCCCCcEE
Q 004149 658 -GTTDI--------PDWCYVESYGSKG-----------KDSFTESP-------SVEDLTRFHSK--SPISHISKVKTPTI 708 (771)
Q Consensus 658 -~~~~~--------~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~--sp~~~~~~i~~P~L 708 (771)
..... ..|.... +.... ...+...+ ........... .....+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 00000 0000000 00000 00000000 00000000000 11234577899999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHH
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 769 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~wl~~~ 769 (771)
+++|++|.+++++.++.+++.+++.+. +++++++++++|.+..+.. +..+++.|.+||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987653 4689999999999875544 667889999999875
No 38
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.83 E-value=2.4e-19 Score=192.05 Aligned_cols=232 Identities=15% Similarity=0.151 Sum_probs=150.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++.++++.|+ ..++.|+||+.||. .+.....|...+..|+++||+|+++|+||.|.... . . . .
T Consensus 175 ~~~g~~l~g~l~~P~---~~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~~---~--~--~-~ 242 (414)
T PRK05077 175 IPGGGPITGFLHLPK---GDGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSSK---W--K--L-T 242 (414)
T ss_pred cCCCcEEEEEEEECC---CCCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCCC---C--C--c-c
Confidence 345678999999997 34677887766553 33212346667788999999999999999543311 0 0 0 1
Q ss_pred cch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hh-cCCCCCcchhhhhc
Q 004149 595 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MV-GTTDIPDWCYVESY 671 (771)
Q Consensus 595 ~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~-~~~~~~~~~~~~~~ 671 (771)
.+. ....++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+++... .. .....+.. +...+
T Consensus 243 ~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~l 321 (414)
T PRK05077 243 QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVL 321 (414)
T ss_pred ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHH
Confidence 122 2234778899888888999999999999999999999988999999999998764210 00 00000100 00000
Q ss_pred cCCCCCcCCC-CCChhh-HHHHhhcCcc--cc-ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004149 672 GSKGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
.. .+.. ....+. ...+...+.. .. ..++++|+|+++|++|+++|+++++.+.+... +.+++++|++
T Consensus 322 a~----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~- 392 (414)
T PRK05077 322 AS----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK- 392 (414)
T ss_pred HH----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-
Confidence 00 0000 001111 1111111211 11 25789999999999999999999987765543 4688899986
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|.+ +...+++..+.+||+++|.
T Consensus 393 ~~~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 393 PVY---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred Ccc---CCHHHHHHHHHHHHHHHhC
Confidence 322 3557889999999999873
No 39
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.83 E-value=5.1e-20 Score=181.58 Aligned_cols=204 Identities=24% Similarity=0.323 Sum_probs=142.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC--CCh-hh-hhcC---CCCcc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG--FGE-EA-LQSL---PGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~--~g~-~~-~~~~---~~~~~ 593 (771)
+.+++..|++ .++.|.||++|+..+. .......++.|+++||.|++||+-+..+ ... .. .... .....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999984 3688999999996543 2445567889999999999999754332 111 00 0000 00011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 22357888999999998878899999999999999999998876 67899988777100
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
. ..+.....++++|+|+++|++|+.++.+....+.+.|++++.++++.+||+++|+|....
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 011233556789999999999999999999999999999999999999999999998533
Q ss_pred -------ChHHHHHHHHHHHHHHh
Q 004149 754 -------SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 -------~~~~~~~~i~~wl~~~l 770 (771)
...+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678899999999987
No 40
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.83 E-value=1.2e-18 Score=190.66 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=178.6
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004149 107 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 107 SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.+.+.+++|++... ++...++.++ +++..++++...... ..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 44678899998764 3456677777 555666676643323 4889999999999985432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|+++|+.+++.+.+ .........+.|||||+. |+|+...
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999988777 333334556899999999 9987632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004149 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+...+||.+++ .++..++++........|.|||||++|+|.+.+. |
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g- 300 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----G- 300 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC----C-
Confidence 23348999998 7778888887666667899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004149 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|+|||+.|++.....+..+|+.+++.++.
T Consensus 301 ---~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 301 ---SPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 358999998876644332111 023467899999999998876677789999999988
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
.+.++.... ...+.|++||+.|++.+..... ..+++.+.
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 888775433 3446899999999998876554 56676654
No 41
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.81 E-value=1.4e-18 Score=177.18 Aligned_cols=231 Identities=11% Similarity=0.066 Sum_probs=150.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHH-HHCCcEEEEECC--CCCCCCCh--hh-----
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFL-SSVGYSLLIVNY--RGSLGFGE--EA----- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~l-a~~G~~V~~~d~--rG~~~~g~--~~----- 584 (771)
.+.++.+.+|.|++.. .++.|+|+++||.+... ..|. ..+..+ ++.||.|++||+ ||.+..+. .|
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~--~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~ 99 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTH--ENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKG 99 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCc--cHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCC
Confidence 3567888999998642 35689999999977553 2332 223344 567999999997 55432221 11
Q ss_pred ---h-hcCCCCcc-c-cchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh
Q 004149 585 ---L-QSLPGKVG-S-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 585 ---~-~~~~~~~~-~-~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~ 657 (771)
. +....... . .....+.+.+..+++ ...++.++++|+|+||||++++.++.++|+.++++++.+|+.+....
T Consensus 100 ~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~- 178 (275)
T TIGR02821 100 AGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC- 178 (275)
T ss_pred ccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC-
Confidence 0 00000000 0 112233334444333 34478899999999999999999999999999999999998764211
Q ss_pred cCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcccccc--CCCCcEEEEeeCCCCccCc-HHHHHHHHHHHhCC
Q 004149 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKG 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~-~~~~~~~~~l~~~g 734 (771)
..... .... +..... ..+...+|...+. ...+|+++.||+.|+.+|. .++..+.+.|+++|
T Consensus 179 ---~~~~~-~~~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g 242 (275)
T TIGR02821 179 ---PWGQK-AFSA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAG 242 (275)
T ss_pred ---cchHH-HHHH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcC
Confidence 00000 0111 111111 1122334443333 2468999999999999998 68889999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++..+|+++|++.. ....+.+.++|+.+++
T Consensus 243 ~~v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 243 QALTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred CCeEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 99999999999999863 3456788888888764
No 42
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.81 E-value=2.6e-19 Score=162.90 Aligned_cols=211 Identities=17% Similarity=0.204 Sum_probs=149.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
..+|+++||..++ ......+.++|.++||.|.+|.|||.+-....+.+..+..| ++|+.+++++|.+.++ +
T Consensus 15 ~~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~ 85 (243)
T COG1647 15 NRAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---D 85 (243)
T ss_pred CEEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---C
Confidence 3789999996655 55778889999999999999999995554444433322222 7899999999997753 6
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhc-
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK- 694 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 694 (771)
.|+++|.||||.+++.+|.++| ++++|..|+..+...... ...... +... ...+.+.........+...
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~--y~~~-----~kk~e~k~~e~~~~e~~~~~ 156 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLE--YFRN-----AKKYEGKDQEQIDKEMKSYK 156 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHH--HHHH-----hhhccCCCHHHHHHHHHHhh
Confidence 8999999999999999999988 677777766554221100 000000 0111 1111111111111111111
Q ss_pred ---------------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHH
Q 004149 695 ---------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759 (771)
Q Consensus 695 ---------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 759 (771)
.....++.|..|+|++.|.+|+.||.+.+..++..+.. .+.++.+|++.||.+.....+.++.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~ 234 (243)
T COG1647 157 DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVE 234 (243)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHH
Confidence 12345788999999999999999999999999998865 3578999999999999888888999
Q ss_pred HHHHHHHH
Q 004149 760 LNIGLWFK 767 (771)
Q Consensus 760 ~~i~~wl~ 767 (771)
+.++.||+
T Consensus 235 e~V~~FL~ 242 (243)
T COG1647 235 EDVITFLE 242 (243)
T ss_pred HHHHHHhh
Confidence 99999996
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.81 E-value=1.2e-18 Score=185.02 Aligned_cols=245 Identities=13% Similarity=0.113 Sum_probs=155.3
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...++..+.+..+.|. .....++||++||.+.. ...|...+..|+++||.|+++|+||.+.+... ......
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~---~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL---HGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC---CCCCcC
Confidence 34456677888888885 33456899999996654 33567788899999999999999995443221 111111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhhhhcC---------C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGT---------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~---------~ 660 (771)
.....+|+.++++++.... +..+++|+||||||.+++.++. +|+ .++++|+.+|...+...... .
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1223578888888887652 2357999999999999997764 554 78999999997643210000 0
Q ss_pred CCCcchhhh--hccCCC-------CCcCC------CCCChhhHHHHhhcC--ccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 661 DIPDWCYVE--SYGSKG-------KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~~--~~~~~~-------~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
-.+.+.+.. ..+... ...+. +.............. ....+.++++|+|++||++|.++|++.+
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 000000000 000000 00000 000000000000000 1234677899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++++.+... ..++.++++++|.+.......++++.+.+||+.++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~ 388 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRL 388 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHh
Confidence 9998886542 36778899999998766667889999999999876
No 44
>PRK10162 acetyl esterase; Provisional
Probab=99.80 E-value=7.9e-18 Score=175.03 Aligned_cols=221 Identities=14% Similarity=0.152 Sum_probs=154.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+.+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999962 246999999999876433 345667777876 6999999999986653 223358
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+.... ..+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~~-- 204 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSRR-- 204 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhHH--
Confidence 9999999998764 347889999999999999999988642 3568899999998764211 0000
Q ss_pred hhccCCCCCcCCCCCChhhHHH----Hh-----hcCccc-----cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 669 ESYGSKGKDSFTESPSVEDLTR----FH-----SKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~----~~-----~~sp~~-----~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
.++.. +.. ........ |. ..+|.. .+...-+|++|++|+.|++. .+++.|+++|+++|
T Consensus 205 -~~~~~----~~~-l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aG 276 (318)
T PRK10162 205 -LLGGV----WDG-LTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQ 276 (318)
T ss_pred -HhCCC----ccc-cCHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcC
Confidence 00000 000 00000000 00 112221 11122379999999999987 68999999999999
Q ss_pred CCEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l~ 771 (771)
++++++++++..|++... +...+.+..+.+||+++|+
T Consensus 277 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 277 QPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997632 2345778899999999875
No 45
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.80 E-value=5.2e-18 Score=179.69 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=160.1
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+.|||||++|+|...... +.+.+|++++++++..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 47899999999999854321 227899999999988877
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.........+.|||||++ |+|+..+ +...+||.+|+ .++..++|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 455566778999999999 9999843 34569999999 77778889999
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+|.|||||++|||.+.+. | ..+||++++++++.++++.... ....+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~----G----~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG----G----RPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC----C----CcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 3 5699999999988766654431 122678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
|||||++|+|....++...+...++.++. .+.++.... ...+.++++++.+++..... .-+.++.....
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999865566678888887776 555554433 34578899999999998777 44445555543
No 46
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.79 E-value=4.4e-18 Score=173.54 Aligned_cols=245 Identities=14% Similarity=0.141 Sum_probs=156.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++....+.+.. .+..+||++||.... ...|...+..|..+||.|+++|.||.|.+.+ .....-.
T Consensus 13 ~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r--~~rg~~~ 84 (298)
T COG2267 13 YFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRGHGRSPR--GQRGHVD 84 (298)
T ss_pred eeecCCCceEEEEeecCCC----CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCcCCch
Confidence 4455678888888887652 233899999996654 4467788999999999999999999544421 1111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--hhc-----CCCCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVG-----TTDIPD 664 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~~~-----~~~~~~ 664 (771)
....-..|+...++.+.+. .-..+++|+||||||.+++.++.+++..+.++|+.+|.+.+.. ... .....
T Consensus 85 ~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~- 161 (298)
T COG2267 85 SFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLL- 161 (298)
T ss_pred hHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccc-
Confidence 1111244555555555443 1347899999999999999999999999999999999887652 100 00000
Q ss_pred chhhhhccCCC-----CCcCCCCCChhhHHHHhhcCc-----------------------cccccCCCCcEEEEeeCCCC
Q 004149 665 WCYVESYGSKG-----KDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 665 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~Lii~G~~D~ 716 (771)
......+.... ...-....... .......+| ......+++|+||++|++|.
T Consensus 162 ~~~~p~~~~~~~~~~~~~~~~~sr~~~-~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D~ 240 (298)
T COG2267 162 GRIRPKLPVDSNLLEGVLTDDLSRDPA-EVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDDR 240 (298)
T ss_pred cccccccccCcccccCcCcchhhcCHH-HHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCCc
Confidence 00000000000 00000000001 111111112 12245678999999999999
Q ss_pred ccC-cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHHh
Q 004149 717 RVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 770 (771)
Q Consensus 717 ~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l 770 (771)
+++ .+...++++.+... ++++.+++|+.|.+..+... .++++.+.+||.+++
T Consensus 241 vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 241 VVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred cccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 998 67766666665432 37899999999998877666 889999999999876
No 47
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.79 E-value=7.5e-18 Score=165.42 Aligned_cols=207 Identities=20% Similarity=0.251 Sum_probs=159.9
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh----hcCC----
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 589 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~----~~~~---- 589 (771)
+.++.+++.+|+ ...+.|+||++|+..+. .......++.|+.+||.|++||+-+..+...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999998 44445999999996554 3467778999999999999999754222111110 0000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.........|+.+++++|..++.++.++|+++|+||||.+++.++.+.| .++++++..|..-..
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~--------------- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD--------------- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC---------------
Confidence 0111344789999999999998889999999999999999999998866 789998876642100
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
......++++|+|+.+|+.|..+|......+.+.+.+.++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001145788999999999999999999999999999998899999999999998
Q ss_pred CCCC----------ChHHHHHHHHHHHHHHhC
Q 004149 750 ERPQ----------SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~----------~~~~~~~~i~~wl~~~l~ 771 (771)
..+. ...+.|+++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8542 245788999999999874
No 48
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.78 E-value=5.8e-18 Score=159.62 Aligned_cols=210 Identities=16% Similarity=0.203 Sum_probs=151.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+..|..+.+..++|+. ...+++++.||...... ........| ...++.|+.+||+|.+.++.. +.+
T Consensus 42 t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE-- 108 (258)
T KOG1552|consen 42 TSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE-- 108 (258)
T ss_pred cCCCCEEEEEEEcCcc----ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEecccccccCCC-----ccc--
Confidence 4456778888888762 35699999999643322 111122222 235899999999995444322 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~ 672 (771)
....+|+.++.+||.+... ..++|+|+|+|+|...++.+|++.| .+|+|+.+|+.+....... .....|+
T Consensus 109 ~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~------ 179 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF------ 179 (258)
T ss_pred ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee------
Confidence 2458999999999999876 7899999999999999999999988 9999999999876554322 1111000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....-+..++.|++|+|++||++|+++|..++.+++++.++. ++..+..|+||.-.
T Consensus 180 -------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~-- 235 (258)
T KOG1552|consen 180 -------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDI-- 235 (258)
T ss_pred -------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCccc--
Confidence 000115667788999999999999999999999999999874 77788889999754
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
+...++.+.+..|+...+
T Consensus 236 ~~~~~yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 236 ELYPEYIEHLRRFISSVL 253 (258)
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 223467778888876543
No 49
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.77 E-value=6.4e-18 Score=173.00 Aligned_cols=241 Identities=18% Similarity=0.185 Sum_probs=152.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc----
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 587 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~---- 587 (771)
.+.+-+|.+|.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 5556678999999999985 45789999999995543 12222 234578999999999999977432221100
Q ss_pred CC-----------CC-ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-chh
Q 004149 588 LP-----------GK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA 654 (771)
Q Consensus 588 ~~-----------~~-~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~ 654 (771)
.. .. +....+.|+.+++++|.+++.+|.+||++.|.|+||.+++.+++..+ +++++++..|.. |..
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 00 00 11123579999999999999999999999999999999999999865 699888888854 444
Q ss_pred hhhcCCC-CCcchhhhhccCCCCCcCCCC--CChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 655 LMVGTTD-IPDWCYVESYGSKGKDSFTES--PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 655 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
....... ...+.....+.. ..... ...+..+.+...+....+++|++|+|+..|-.|..+||......|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322211 111111111100 00000 1123344566777888899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 4 489999999999764 223378899999875
No 50
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.77 E-value=6e-17 Score=184.68 Aligned_cols=265 Identities=15% Similarity=0.190 Sum_probs=176.7
Q ss_pred eeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEE----cCCC--------CCCC-----C--Cc-------
Q 004149 501 IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVL----HGGP--------HSVS-----L--SS------- 554 (771)
Q Consensus 501 ~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~----HGg~--------~~~~-----~--~~------- 554 (771)
.+.+-++...++-.||.--.|++.+++|+....+-+.|+|+-. .|.- +... . ..
T Consensus 170 re~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 249 (767)
T PRK05371 170 REVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPRAQFTPLKT 249 (767)
T ss_pred EEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCccccccccc
Confidence 3444455544555555555789999999865444477877733 2320 0000 0 00
Q ss_pred ------------------chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--CC
Q 004149 555 ------------------YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--AN 614 (771)
Q Consensus 555 ------------------~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~d 614 (771)
-....++|+.+||+|+.+|.||.+++++.+ ...+..+.+|+.++|+||..+.. .|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d 324 (767)
T PRK05371 250 QPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTD 324 (767)
T ss_pred cccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccc
Confidence 113557899999999999999987765542 22345678999999999985321 12
Q ss_pred ------------CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCC----cch------hhh-hc
Q 004149 615 ------------PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVE-SY 671 (771)
Q Consensus 615 ------------~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~----~~~------~~~-~~ 671 (771)
..||+++|.||||++++.+|...|+.++++|..+++.++..++...... .|. +.. .+
T Consensus 325 ~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~ 404 (767)
T PRK05371 325 RTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTY 404 (767)
T ss_pred cccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhh
Confidence 5799999999999999999998888999999999988765443221100 000 000 00
Q ss_pred c---CCC-----CCc-------CC---CCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 672 G---SKG-----KDS-------FT---ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 672 ~---~~~-----~~~-------~~---~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ... ... +. ........+.|...++..+++++++|+|++||..|.++++.++.+++++|++.
T Consensus 405 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~ 484 (767)
T PRK05371 405 SRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPEN 484 (767)
T ss_pred hcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhc
Confidence 0 000 000 00 00000111234556777888999999999999999999999999999999998
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
+++.++++.++ +|.........++.+.+.+||+++|+
T Consensus 485 g~pkkL~l~~g-~H~~~~~~~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 485 GVPKKLFLHQG-GHVYPNNWQSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred CCCeEEEEeCC-CccCCCchhHHHHHHHHHHHHHhccc
Confidence 98999877755 68765444556788999999999985
No 51
>PRK11460 putative hydrolase; Provisional
Probab=99.76 E-value=6.4e-17 Score=159.97 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=133.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCC----CCChhhhhcCCCCccccc-------hhhHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 602 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~----~~g~~~~~~~~~~~~~~~-------~~D~~~ 602 (771)
....|+||++||.+.+ ...+...+..|+..++.+..+.++|.. +.|..|.... ....... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 4456899999997665 446777888888777655566666532 1133333211 1011111 223445
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCC
Q 004149 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 682 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (771)
.++++.++..++.++|+|+|+|+||.+++.++.++|+.++++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 56666666668889999999999999999999888988887776655320 0 0
Q ss_pred CChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHH
Q 004149 683 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 683 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
+. ....++|+|++||++|++||++.++++++.|++.+.++++..|++++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011368999999999999999999999999999999999999999999986 4677888
Q ss_pred HHHHHHHh
Q 004149 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~wl~~~l 770 (771)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 88988776
No 52
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.74 E-value=1.3e-16 Score=166.11 Aligned_cols=220 Identities=15% Similarity=0.167 Sum_probs=131.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.. ...|...+..|++.||.|+++|+|| +|.+.. +........++..+.+..+++. ++.+
T Consensus 46 ~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 4789999997644 4568888888988899999999999 554421 1111122344555444444443 2456
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh------hh---cC-CCCCcchhhh----hc----cCCCCCc
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------MV---GT-TDIPDWCYVE----SY----GSKGKDS 678 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------~~---~~-~~~~~~~~~~----~~----~~~~~~~ 678 (771)
++.|+||||||.+++.++.++|++++++|+.++...... +. .. ...+...... .. .......
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 899999999999999999999999999998886421100 00 00 0000000000 00 0000000
Q ss_pred CCCCCChh---h-HHHH---hhcC-----------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 679 FTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 679 ~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +.+.+.+.+. ..+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 00000000 0 0000 0000 012356789999999999999999765 6666666532 113477
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+++++||.... +....+.+.+.+||+++
T Consensus 274 ~i~~~gH~~~~-e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQE-DSGEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccchh-hChHHHHHHHHHHHhcC
Confidence 89999998764 44568889999999865
No 53
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.73 E-value=5.6e-17 Score=169.29 Aligned_cols=233 Identities=21% Similarity=0.287 Sum_probs=157.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+..+.+.+|.| ........|+||++|||++........ .....++..|+.|+++|||-.+++ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466889999 223556789999999999876554333 345566789999999999987654 3344
Q ss_pred chhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004149 596 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.++++|..+... . ......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCc
Confidence 6899999999999773 4889999999999999999999876433 5688999999987664 1 1111000000
Q ss_pred hhccCC-----CCCcCCCCCChhhHHHHhhcCcccc--ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 669 ESYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+... ....+..... + ......+|+.. +.. -+|++|++|+.|.+.+ +++.+.++|+++|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--~-~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAAP--D-REDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred cccCHHHHHHHHHHHhCcCcc--c-cCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 000000 0000000000 0 00012344432 233 5789999999999996 89999999999999999999
Q ss_pred eCCCCccCCCC--CChHHHHHHHHHHHHHHh
Q 004149 742 FPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~--~~~~~~~~~i~~wl~~~l 770 (771)
+++..|.|... ......+.++..|+...+
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 99999988432 223455677888877543
No 54
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.73 E-value=9.6e-17 Score=157.22 Aligned_cols=192 Identities=18% Similarity=0.145 Sum_probs=124.1
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCCCCChhh--hhcCCCCccccch
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~rG~~~~g~~~--~~~~~~~~~~~~~ 597 (771)
+++|.|++. .++.|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 368889863 467899999999775432 221 1344556789999999999865433221 1111112233457
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
.++...++++.++..+|++||+|+|+|+||++++.++.++|++++++++.++....... .. ......
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~----~~-----~~~~~~---- 143 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS----SS-----ISATPQ---- 143 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc----cc-----hhhHhh----
Confidence 88889999999887789999999999999999999999999999999888775311000 00 000000
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
................. .....+..+|++|+||++|.+||++.++++++++++.
T Consensus 144 -~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 -MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred -cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112233456889999999999999999999999875
No 55
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.73 E-value=3.3e-17 Score=147.49 Aligned_cols=224 Identities=20% Similarity=0.282 Sum_probs=158.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~ 590 (771)
+....|..++++++..- +...|+++++|+..++.. .....+. .+.+.+..|++++||| ||.+.. .+.
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--sps 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPS 125 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeec---cccCCC--Ccc
Confidence 44566788999999982 347899999999776542 2223333 5578899999999999 555421 122
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
+.| -.-|..++++|+..++..|..+++++|.|.||..|.++|++..+++.|+++.+.+.++..+.-..-.+
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p------- 196 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP------- 196 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------
Confidence 222 25688999999999999999999999999999999999999999999999999887764332111000
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+.. +.+ +.+-.... .+....+...+.|.|++.|.+|.+|||.+.+++|+..... ..++..||++.|+-.
T Consensus 197 ~~~---k~i---~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT 265 (300)
T KOG4391|consen 197 FPM---KYI---PLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDT 265 (300)
T ss_pred chh---hHH---HHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCce
Confidence 000 000 00000001 1222334466789999999999999999999999987654 367889999999744
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 004149 751 RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl~~~ 769 (771)
-.. .-+++.|.+|+.+.
T Consensus 266 ~i~--dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 266 WIC--DGYFQAIEDFLAEV 282 (300)
T ss_pred EEe--ccHHHHHHHHHHHh
Confidence 222 24788899998765
No 56
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=7.4e-17 Score=151.02 Aligned_cols=240 Identities=17% Similarity=0.198 Sum_probs=159.3
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhh----hh
Q 004149 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA----LQ 586 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~----~~ 586 (771)
.++..-.|.+|.+|++.|+. ..++.|+||-.||-.+..+ ....+-.++..||+|+.+|.||.+++..+. ..
T Consensus 59 vTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~ 133 (321)
T COG3458 59 VTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGG 133 (321)
T ss_pred EEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCccccCCCCCCC
Confidence 47777789999999999984 3388999999999443322 112233567889999999999977653211 11
Q ss_pred -cCCCC------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch
Q 004149 587 -SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 587 -~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 653 (771)
..++. +....+.|+..+++.+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...-
T Consensus 134 ~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~d 212 (321)
T COG3458 134 PSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSD 212 (321)
T ss_pred CcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccccccccccc
Confidence 11111 1112356899999999998889999999999999999999998875 479999999997642
Q ss_pred hh-hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004149 654 AL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 654 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
.. .........+.....|.. .......+..+.+...+....+.++|.|+|+..|-.|++|||....+.++++..
T Consensus 213 f~r~i~~~~~~~ydei~~y~k-----~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 213 FPRAIELATEGPYDEIQTYFK-----RHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred chhheeecccCcHHHHHHHHH-----hcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 21 111110000100001100 011112233444445556677889999999999999999999999999998865
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
. .++.+||.-+|.-. +. -..+++..|++.
T Consensus 288 ~---K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~ 316 (321)
T COG3458 288 S---KTIEIYPYFAHEGG-PG---FQSRQQVHFLKI 316 (321)
T ss_pred C---ceEEEeeccccccC-cc---hhHHHHHHHHHh
Confidence 3 56667777778643 11 123456666654
No 57
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.72 E-value=2.2e-16 Score=160.29 Aligned_cols=231 Identities=19% Similarity=0.260 Sum_probs=158.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+..++|+|.......+.|+|||+|||++... ...|......+ .+.+..|+++|||-++++ ....
T Consensus 73 ~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~Pa 141 (336)
T KOG1515|consen 73 NLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFPA 141 (336)
T ss_pred CeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCCc
Confidence 37788999987655578999999999998765 34555566665 678999999999987664 3345
Q ss_pred chhhHHHHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHHhC------CCceeEEEecCCccchhhhhcCC-----
Q 004149 596 DVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT----- 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~a~v~~~p~~~~~~~~~~~----- 660 (771)
.++|+.+++.|+.++ ..+|++||+|+|-|.||.+|.+++.+. +..+++.|++.|++........+
T Consensus 142 ~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~ 221 (336)
T KOG1515|consen 142 AYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNL 221 (336)
T ss_pred cchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhh
Confidence 689999999999885 448999999999999999999988753 34689999999987643322110
Q ss_pred CCC---cchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-----cccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 661 DIP---DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 661 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
+.. .+.....+.. ...|...........+|.. ..... -+|+|++.++.|... +++..+.++|+
T Consensus 222 ~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 222 NGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred cCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 000 0000000000 0000000000000112222 11122 356999999999888 89999999999
Q ss_pred hCCCCEEEEEeCCCCccCCC--C--CChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~--~--~~~~~~~~~i~~wl~~~ 769 (771)
+.|++++++.++++.|++.. + ....+.+..+..|+++.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999998653 2 24456777888888764
No 58
>PLN02511 hydrolase
Probab=99.72 E-value=1.9e-16 Score=169.17 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=144.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.||..+...++.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||+++.... .+..+..
T Consensus 79 ~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~----~~~~~~~ 153 (388)
T PLN02511 79 PDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADSPVT----TPQFYSA 153 (388)
T ss_pred CCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC----CcCEEcC
Confidence 455566654443321112345689999999765532 234 3456667789999999999996543211 1111122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCc--eeEEEecCCccchhhhhc--CCCCC---cchh
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVG--TTDIP---DWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~--~~~~~---~~~~ 667 (771)
...+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..+...... ..... ...+
T Consensus 154 ~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~ 231 (388)
T PLN02511 154 SFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKAL 231 (388)
T ss_pred CchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHHH
Confidence 34789999999998763 346899999999999999999999876 677776666544311000 00000 0000
Q ss_pred h-------h----hcc------------C-CCC--------CcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCC
Q 004149 668 V-------E----SYG------------S-KGK--------DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 ~-------~----~~~------------~-~~~--------~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
. . .+. . ... ....+.. ...+.|...++...+.+|++|+|+|+|++|
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~dD 309 (388)
T PLN02511 232 AKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAND 309 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCCC
Confidence 0 0 000 0 000 0000001 111223456677788999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-----HHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-----~~~~~~i~~wl~~~l 770 (771)
+++|++.... .+.+....+++++++++||........ .-..+.+.+||+...
T Consensus 310 pi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 310 PIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998764321 122233458999999999975533221 124577888887653
No 59
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.72 E-value=1.9e-16 Score=163.64 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 537 DPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|.||++||.+.... +..+...+..+++.||.|+++|+|| +|.+..............+|+.+.++.+ +.
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~l------~~ 100 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDAL------DI 100 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHHc------CC
Confidence 367999999654421 1122234556778899999999999 4444321100111111234444444432 45
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccCCC-CCcCCC-
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKG-KDSFTE- 681 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~- 681 (771)
+++.++||||||.+++.++.++|++++++|+.+|............ .........+.... ......
T Consensus 101 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (282)
T TIGR03343 101 EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLIT 180 (282)
T ss_pred CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCc
Confidence 7899999999999999999999999999999887421100000000 00000000000000 000000
Q ss_pred -----------CCChhhHHHHh---------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 682 -----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 682 -----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.........+. ..+....+.++++|+|+++|++|.+++++.++++.+.+. ++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~ 256 (282)
T TIGR03343 181 EELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHV 256 (282)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEE
Confidence 00000000110 011123467889999999999999999988888877765 378899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++++||... .+....+.+.+.+||+
T Consensus 257 i~~agH~~~-~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 257 FSRCGHWAQ-WEHADAFNRLVIDFLR 281 (282)
T ss_pred eCCCCcCCc-ccCHHHHHHHHHHHhh
Confidence 999999876 4445578889999985
No 60
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.71 E-value=4.5e-16 Score=162.92 Aligned_cols=245 Identities=13% Similarity=0.148 Sum_probs=145.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--------------------cc----hHHHHHHHHCCcEE
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 569 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~G~~V 569 (771)
.+.+|..|....+.|+ .++.+|+++||.+...... .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3457888888888774 2457999999944332111 11 35688999999999
Q ss_pred EEECCCCCCCCChhhhhcCCCC--ccccchhhHHHHHHHHHHc------------------CCCCCCeEEEEEcChhHHH
Q 004149 570 LIVNYRGSLGFGEEALQSLPGK--VGSQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 629 (771)
Q Consensus 570 ~~~d~rG~~~~g~~~~~~~~~~--~~~~~~~D~~~~i~~l~~~------------------~~~d~~ri~l~G~S~GG~~ 629 (771)
+++|+||.|...... ...+. ....-++|+...++.+.+. ..-...+++|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~~--~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGLQ--NLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCcccc--ccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 999999954432110 00111 1112256777777766541 0011357999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCccchhhhhcC--CCCCcch--hh---hhccC--------------CCCCcC-
Q 004149 630 TTHLIGQAPD--------KFVAAAARNPLCNLALMVGT--TDIPDWC--YV---ESYGS--------------KGKDSF- 679 (771)
Q Consensus 630 a~~~a~~~p~--------~~~a~v~~~p~~~~~~~~~~--~~~~~~~--~~---~~~~~--------------~~~~~~- 679 (771)
++.++.++++ .++++|+.+|.+.+...... ...+.+. .. ..+.. .....+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9998865432 58888888887543110000 0000000 00 00000 000000
Q ss_pred ------CCCCChhhHHHHhhcCc--cccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 680 ------TESPSVEDLTRFHSKSP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 680 ------~~~~~~~~~~~~~~~sp--~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
...........+..... ...+.++ ++|+|+++|++|.+++++.++.+++.+.. .++++.++++++|.+
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i 313 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVI 313 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCC
Confidence 00001111111111110 1133445 68999999999999999998888776643 246888999999998
Q ss_pred CCCCChHHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl~ 767 (771)
.......++++.+.+||+
T Consensus 314 ~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 314 TIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 877667789999999986
No 61
>PRK10985 putative hydrolase; Provisional
Probab=99.71 E-value=5.6e-16 Score=162.37 Aligned_cols=225 Identities=14% Similarity=0.109 Sum_probs=137.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.++..........+..|+++||.|+++|+||.++..... .........+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345778899999999999999965432111 11111234789999999998763
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCc--eeEEEecCCccchhhhhcC--CC---CCcchhh-----------hhccC--
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGT--TD---IPDWCYV-----------ESYGS-- 673 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~a~v~~~p~~~~~~~~~~--~~---~~~~~~~-----------~~~~~-- 673 (771)
...+++++||||||.+++.+++++++. +.++|++++..++...... .. .....+. ..+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346799999999999888888776543 7777777776553211000 00 0000000 00000
Q ss_pred ------------------CCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 674 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 674 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
.....+.+. ....+.+...++...+.++++|+|+++|++|++++++....+.+ ...
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPES----LPP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHH----hCC
Confidence 000000011 11223344556666788999999999999999998766555432 223
Q ss_pred CEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHHh
Q 004149 736 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~wl~~~l 770 (771)
++++++++++||..... ....-.-+.+.+||+..+
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 58889999999974432 122234467888987664
No 62
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.70 E-value=7.4e-16 Score=158.30 Aligned_cols=229 Identities=12% Similarity=0.139 Sum_probs=137.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++++.... +...+.||++||.+.+ ...|...+..|.+ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPYR 73 (276)
T ss_pred CCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcCc
Confidence 566676655321 1223679999996554 3467777777754 69999999999 55442111 1123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------CCCCCcc---h
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW---C 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~~---~ 666 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++......... ....... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 44444444444443 2346799999999999999999999999999999987653210000 0000000 0
Q ss_pred ----h-hhhccCC------CCCc----CCCCCChhhHHH---HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 667 ----Y-VESYGSK------GKDS----FTESPSVEDLTR---FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 667 ----~-~~~~~~~------~~~~----~~~~~~~~~~~~---~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
. ...+... .... ............ .........+.++++|+|+++|++|+.+|++.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 0 0000000 0000 000000000000 01111224467889999999999999999998888877
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
.+.. .+++++++ ||.... +...++.+.+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~-e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLI-TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhh-ccHHHHHHHHHHHHHHh
Confidence 7653 57778875 998764 45568899999999864
No 63
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.70 E-value=3.5e-16 Score=162.36 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=132.3
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--CccccchhhHHHHHHHHHHcCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+.+ ...|...+..|+.. |.|+++|+||. |.+....... .......+++...+..+++.. ..
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG~---G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLGY---GYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCCC---CCCCCCccccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 789999997765 45788888888776 79999999994 4442211000 001234555555555554432 24
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC---------------CCCCc-chhhh----------
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT---------------TDIPD-WCYVE---------- 669 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~---------------~~~~~-~~~~~---------- 669 (771)
+++.|+||||||.+++.++.++|++++++|+.++.......... ..... ..+..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 78999999999999999999999999999998875321000000 00000 00000
Q ss_pred ----hccCC-CC-----CcCC---CCCC-hhhHHHHhhc----CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 670 ----SYGSK-GK-----DSFT---ESPS-VEDLTRFHSK----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 670 ----~~~~~-~~-----~~~~---~~~~-~~~~~~~~~~----sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
.+... .. ..+. ..+. ......+... .....+.++++|+|+++|++|..+|.+.++.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~- 260 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD- 260 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC-
Confidence 00000 00 0000 0000 0000011111 112346788999999999999999988776643332
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
...++++++++||.... +...++...+.+||+++
T Consensus 261 ---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 ---AVEDFIVLPGVGHCPQD-EAPELVNPLIESFVARH 294 (294)
T ss_pred ---CccceEEeCCCCCChhh-hCHHHHHHHHHHHHhcC
Confidence 23688999999997764 55568889999999864
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.69 E-value=4.6e-16 Score=158.15 Aligned_cols=216 Identities=15% Similarity=0.228 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.+.|+||++||.+.+ ...|...+..|. +||.|+++|+||.+.+... . ......++..+.+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~-----~--~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGTGRSPGE-----L--PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCCCCCCCC-----C--cccCCHHHHHHHHHHHHHH--hC
Confidence 346889999997654 345666666664 5799999999995443221 0 1112344544444444443 24
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh-----------cCCCCCcc-------hhhhhccCCCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKGK 676 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~ 676 (771)
.+++.++||||||.+++.++.++|+.++++|+.++........ .......+ .+...+.....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 00000000000
Q ss_pred --------CcCCCC-CChh---hHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 677 --------DSFTES-PSVE---DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 677 --------~~~~~~-~~~~---~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
...... .... ....+...+....+.++++|+|+++|++|..+|++.+.++++.+.+ .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 000000 0000 0111122233345778899999999999999999998888776643 67888999
Q ss_pred CCccCCCCCChHHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+||.+.. +...++.+.+.+||+
T Consensus 235 ~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred CCCCccc-cCHHHHHHHHHHHhc
Confidence 9998764 455678888888885
No 65
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.69 E-value=1.8e-15 Score=148.36 Aligned_cols=224 Identities=18% Similarity=0.212 Sum_probs=138.4
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+....|+|+++||.|.. +..|+.++..|+.+||.|+++|+|| ||.+.. +.......+..+...+..+++.-
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~L- 110 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDHL- 110 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHHh-
Confidence 44567999999998876 5578899999999999999999999 665532 33333334444444444444431
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-----hhhhcCCCCCcch---hhhhccCC----------
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWC---YVESYGSK---------- 674 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-----~~~~~~~~~~~~~---~~~~~~~~---------- 674 (771)
.-+|+.|+||+||+.+|..++..+|+++.+.|+.+..... ......--..++. +.+....+
T Consensus 111 -g~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 111 -GLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred -ccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 2589999999999999999999999999999987754430 0000000000000 00000000
Q ss_pred --------CCCcCCCC----------CChhh-------------------HHHHhhcCc--cccccCCCCcEEEEeeCCC
Q 004149 675 --------GKDSFTES----------PSVED-------------------LTRFHSKSP--ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 675 --------~~~~~~~~----------~~~~~-------------------~~~~~~~sp--~~~~~~i~~P~Lii~G~~D 715 (771)
........ ..+++ ...+....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 00000000 00111 111222221 3345678899999999999
Q ss_pred CccCcHHHHHHHHH-HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARA-LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~-l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
...+...-.+.++. +... .+.++++++||.... +...++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~l---~~~vv~~~~gH~vqq-e~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPRL---TERVVIEGIGHFVQQ-EKPQEVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhccc---cceEEecCCcccccc-cCHHHHHHHHHHHHHhhc
Confidence 99887633333333 3322 367899999997764 445699999999999864
No 66
>PLN02965 Probable pheophorbidase
Probab=99.69 E-value=1.4e-15 Score=154.12 Aligned_cols=215 Identities=17% Similarity=0.158 Sum_probs=130.2
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC-Ce
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 617 (771)
+||++||.+.+ ...|...+..|++.||.|+++|+||. |.+... .. .....+++.+.+..+++. .+. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~---G~S~~~--~~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGA---GISLTD--SN--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcC---CCCCCC--cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997765 45688888999889999999999994 443211 11 112344444444444443 222 58
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc---ch---hhhh--cCCCCCcchh--hhhccCC---------CC-C
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCY--VESYGSK---------GK-D 677 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~---~~---~~~~--~~~~~~~~~~--~~~~~~~---------~~-~ 677 (771)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|.. ....... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 0000000000 0000000 00 0
Q ss_pred cCCCCCChhhHHHH---hhcCcc----------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 678 SFTESPSVEDLTRF---HSKSPI----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 ~~~~~~~~~~~~~~---~~~sp~----------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+......+..... ....+. ..+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000000000 000000 12346899999999999999999888887776654 68889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+||.... +...++...+.+|++..
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHHh
Confidence 9998874 44557888888887653
No 67
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.69 E-value=7e-15 Score=146.69 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=205.2
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC---CC
Q 004149 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP---EN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~---~~ 121 (771)
++|.+ -|.+|.|+.. -++|.+++ ..+++++||+.- +-+..|.|||||+++||.+-. ..
T Consensus 44 l~PDI--~GD~IiFt~~----------DdlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~ 104 (668)
T COG4946 44 LNPDI--YGDRIIFTCC----------DDLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSL 104 (668)
T ss_pred cCCcc--cCcEEEEEec----------hHHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCC
Confidence 35543 5778899754 27888766 344778888663 668899999999999995532 22
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC--------------CCC
Q 004149 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--------------GST 186 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~--------------~~~ 186 (771)
....+|.+. .+|+.+++|....... .-.-|+|||+.|++.-... +-. .|.. ..+
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT---------~VaG~~~dg~iiV~TD~~t-PF~-q~~~lYkv~~dg~~~e~LnlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFT---------RVAGWIPDGEIIVSTDFHT-PFS-QWTELYKVNVDGIKTEPLNLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccc---------eeeccCCCCCEEEEeccCC-Ccc-cceeeeEEccCCceeeeccCC
Confidence 556799998 8899999998732211 2345999999887742111 100 0000 000
Q ss_pred C------------CCCCCccCCCCCC------------------------------------cc------------cccC
Q 004149 187 K------------GGSSDKDCNSWKG------------------------------------QG------------DWEE 206 (771)
Q Consensus 187 ~------------~~~~~~~~~~~~~------------------------------------~~------------~~~~ 206 (771)
+ .+....+-+.|++ .- .|+-
T Consensus 174 pathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSv 253 (668)
T COG4946 174 PATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSV 253 (668)
T ss_pred ceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEe
Confidence 0 0000001111110 00 0111
Q ss_pred Cc----------------------CcccCCccCceEEEEEccCCceeecc-CCCCCCccceE----------EEec-CCC
Q 004149 207 DW----------------------GETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQV----------VWAP-LNE 252 (771)
Q Consensus 207 d~----------------------g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~----------~wsp-Dg~ 252 (771)
|. |...+.....+||++|.++..++.|. +.|-.....++ -|++ +|.
T Consensus 254 dldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 254 DLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred ccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 11 33334444578999999888887774 22221101010 1332 566
Q ss_pred CCccEEEEEeecCc-------------ceeeeeee------------eccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004149 253 GLHQYLVFVGWSSE-------------TRKLGIKY------------CYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 253 ~~~~~l~~~~~~~~-------------~~~~g~~~------------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
. |++++.-.. ..+.|..| -.+....|-++|. .++
T Consensus 334 ~----ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~-----------------~~~ 392 (668)
T COG4946 334 Y----IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK-----------------DGG 392 (668)
T ss_pred E----EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec-----------------CCc
Confidence 6 777763211 11122211 1111224555565 788
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004149 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.+++....+.+.....|||||+++..- + ..+||++|+++|..+.+......
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaN-d----------r~el~vididngnv~~idkS~~~----------------- 444 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVAN-D----------RFELWVIDIDNGNVRLIDKSEYG----------------- 444 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEc-C----------ceEEEEEEecCCCeeEecccccc-----------------
Confidence 8889988889999999999999876543 3 36899999999987665444322
Q ss_pred cCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCe
Q 004149 388 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459 (771)
Q Consensus 388 ~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~ 459 (771)
-+..+.|+|+++.|+++-..+ -..+|-.+|+.++++..+|.+.+....++|+||+++|+|++...-.|+.
T Consensus 445 --lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 445 --LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred --eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCC
Confidence 234678999999888766533 2345777799999999999877655668999999999999877766653
No 68
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.68 E-value=4.2e-15 Score=154.40 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=130.1
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+|| +|.+.... ......+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD-----IDYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHH--hCCC
Confidence 3789999997765 457778888888875 999999999 44442211 112344444444444443 2347
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------------hcCCCCCcchhh--hhccCCCC-CcCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGTTDIPDWCYV--ESYGSKGK-DSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~-~~~~ 680 (771)
++.++|||+||.+++.++.++|++++++|+.++....... ............ ..+..... ..+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 8999999999999999999999999999998874321000 000000000000 00000000 0000
Q ss_pred CCCChhhHHHH-----------------hhcC--------------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 681 ESPSVEDLTRF-----------------HSKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~~~~~~~~~-----------------~~~s--------------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+....+ .... ....+.++++|+|+++|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 00000100000 0000 0122467899999999999999966666565544
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+.. +.++.+++++||.... +...++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQE-DSPEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhh-cCHHHHHHHHHHHHHHh
Confidence 332 3688899999998774 45668889999999875
No 69
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.68 E-value=1.4e-15 Score=154.49 Aligned_cols=216 Identities=16% Similarity=0.160 Sum_probs=127.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-ccchhhHHHHHHHHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~ 611 (771)
+....|+||++||.+.. ...|...+..|+ .+|.|+++|+||.| .+.. ..... ....+|+.+.++++
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G---~s~~---~~~~~~~~~~~d~~~~l~~l---- 78 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRNHG---LSPR---DPVMNYPAMAQDLLDTLDAL---- 78 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCCCC---CCCC---CCCCCHHHHHHHHHHHHHHc----
Confidence 44556889999997665 345666777775 47999999999944 3321 11111 11234444444432
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc-chh-----hh---h-c--CCCCCcchh-hh----hccCC
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LM---V-G--TTDIPDWCY-VE----SYGSK 674 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~-~~~-----~~---~-~--~~~~~~~~~-~~----~~~~~ 674 (771)
..+++.|+||||||.+++.++.++|++++++|+.++.. ... .. . . ......+.. .. .....
T Consensus 79 --~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (255)
T PRK10673 79 --QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEE 156 (255)
T ss_pred --CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCH
Confidence 34679999999999999999999999999999864321 100 00 0 0 000000000 00 00000
Q ss_pred C-----CCcCCCCC----ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 675 G-----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 675 ~-----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
. ...+.... .......+........+..+++|+|+++|++|..++.+..+.+.+.+. ++++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~ 232 (255)
T PRK10673 157 GVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGA 232 (255)
T ss_pred HHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCC
Confidence 0 00000000 000011111111223356678999999999999998776666655543 4788999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+|... .+....+.+.+.+||.+
T Consensus 233 gH~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 233 GHWVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred CCeee-ccCHHHHHHHHHHHHhc
Confidence 99765 44456788999999875
No 70
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.68 E-value=2.2e-15 Score=168.90 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=101.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|+|+ ..++.|+||++||.+.... ..........|+++||+|+++|+||.++++..+. ..+
T Consensus 4 ~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 47889999999997 3457899999998554321 0111224568899999999999999766544321 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 456899999999999987665 699999999999999999999999999999999887754
No 71
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.68 E-value=1.1e-15 Score=140.49 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
+||++||+... ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.... .+.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997765 45678889999999999999999984432 11235556666654322 278999
Q ss_pred EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc
Q 004149 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 698 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 698 (771)
+++|||+||.+++.++.+. ..++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999888310 01
Q ss_pred cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 699 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 699 ~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123456699999999999999999999999887 46899999999995
No 72
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=9.3e-15 Score=142.11 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=182.0
Q ss_pred cCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 92 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 92 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
+.++...+.+...+|||+|++||.-+. .....+|+-.....+..+.... .|..+++|||||++||..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsG-----D~TvR~WD~~TeTp~~t~KgH~-------~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSG-----DTTVRLWDLDTETPLFTCKGHK-------NWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCC-----CceEEeeccCCCCcceeecCCc-------cEEEEEEECCCcchhhccc
Confidence 345555667889999999999986432 3366777433334444443322 2568999999999999988
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccC-----CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE
Q 004149 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEE-----DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV 245 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~ 245 (771)
.+.... .|+... ...+..+..+..|+....|.| .-+......+++.+.+||+..+...... ......+.-+
T Consensus 177 ~dg~I~--lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCv 253 (480)
T KOG0271|consen 177 KDGSIR--LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCV 253 (480)
T ss_pred cCCeEE--EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEE
Confidence 776543 455333 345677888888987777644 3345556667899999999988766652 3344567778
Q ss_pred EEecCCCCCccEEEEEeecCccee----eeeeeeccCCce---eEEEecc-------------cc-cchh----------
Q 004149 246 VWAPLNEGLHQYLVFVGWSSETRK----LGIKYCYNRPCA---LYAVRVS-------------LY-KSEA---------- 294 (771)
Q Consensus 246 ~wspDg~~~~~~l~~~~~~~~~~~----~g~~~~~~~~~~---l~~~d~~-------------~~-~~~~---------- 294 (771)
.|- |.. ++|++..+..-+ ..-..|..-.++ |=.+++. +. ++..
T Consensus 254 rwG--G~g----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 254 RWG--GEG----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEc--CCc----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 885 344 777664333110 000000000000 0011111 00 0000
Q ss_pred hhhhhhcC------------------CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 295 SELELKES------------------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 295 ~~~~~~~~------------------~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++.-.++. ........+++.+..-+..+.|||||++||-.+-+. .+.+|+-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-----------SVkLW~g 396 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-----------SVKLWDG 396 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-----------ceeeeeC
Confidence 00000000 111223456777777789999999999999988775 3777777
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCc
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~ 435 (771)
.+|+.... |.| +...++.++||.|++ |+++.+.+....+|.+. +.++..=.+ ....+
T Consensus 397 ~tGk~las------------------fRG-Hv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~--tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 397 RTGKFLAS------------------FRG-HVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR--TKKLKQDLPGHADEV 454 (480)
T ss_pred CCcchhhh------------------hhh-ccceeEEEEeccCcc-EEEEcCCCceEEEEEee--eeeecccCCCCCceE
Confidence 77765221 222 112356889999986 77888878777777654 556554333 33345
Q ss_pred eeeEEeecCCEEE
Q 004149 436 SWSLLTLDGDNII 448 (771)
Q Consensus 436 ~~~~~s~d~~~l~ 448 (771)
....|+|||..++
T Consensus 455 f~vDwspDG~rV~ 467 (480)
T KOG0271|consen 455 FAVDWSPDGQRVA 467 (480)
T ss_pred EEEEecCCCceee
Confidence 6678899998765
No 73
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.66 E-value=7.1e-15 Score=156.22 Aligned_cols=219 Identities=15% Similarity=0.241 Sum_probs=129.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+... .. .....++..+.+..+.+. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~---~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKP---PG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCC---CC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997655 4467778888865 79999999999 5544211 00 112334444443333333 2346
Q ss_pred eEEEEEcChhHHHHHHHHH-hCCCceeEEEecCCccchhhhhcCCC------CC-cch-------------hhhhcc-CC
Q 004149 617 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWC-------------YVESYG-SK 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~-~~p~~~~a~v~~~p~~~~~~~~~~~~------~~-~~~-------------~~~~~~-~~ 674 (771)
++.|+||||||.+++.++. .+|++++++|+.++............ .+ .|. ...... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999998886 46999999999887532100000000 00 000 000000 00
Q ss_pred CC-----CcCCC-----------------CCC-hhhHHHHhh----cCccccccCCCCcEEEEeeCCCCccCcHHH-HHH
Q 004149 675 GK-----DSFTE-----------------SPS-VEDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 726 (771)
Q Consensus 675 ~~-----~~~~~-----------------~~~-~~~~~~~~~----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~~ 726 (771)
.. ..+.. ... ......+.. .+....+.++++|+|+++|++|..+|++.. .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 00000 000 000011111 111234678899999999999999998743 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
++.+.+.-.+.++++++++||... .+...++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~-~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPH-DDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCcc-ccCHHHHHHHHHHHHHh
Confidence 455554445689999999999866 45566889999999976
No 74
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.66 E-value=1e-15 Score=154.83 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=127.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|. .||.|+++|+||.+. +.. . ......++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~---s~~---~--~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGL---SDA---P--EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCC---CCC---C--CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996554 345666666764 689999999999543 321 1 1122455555555555554 245
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcchhh---hh-ccCCCCCcCCCCCC--h
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYV---ES-YGSKGKDSFTESPS--V 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~---~~-~~~~~~~~~~~~~~--~ 685 (771)
+++.++|||+||.+++.++.++|+.++++++.++......... .......... .. ........+..... .
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 7899999999999999999999999999888776432110000 0000000000 00 00000000000000 0
Q ss_pred hhH----------------HHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 686 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 686 ~~~----------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ..+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..++.++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 0111122223456788999999999999999988777766654 36888999999987
Q ss_pred CCCCChHHHHHHHHHHH
Q 004149 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~wl 766 (771)
... ....+.+.+.+||
T Consensus 235 ~~~-~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVE-QPEAFNAALRDFL 250 (251)
T ss_pred ccc-ChHHHHHHHHHHh
Confidence 643 3456677777776
No 75
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.65 E-value=5.1e-16 Score=152.62 Aligned_cols=189 Identities=22% Similarity=0.316 Sum_probs=123.0
Q ss_pred EEEEcCCCCCCCCCc-chHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc---CCCC
Q 004149 540 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 614 (771)
Q Consensus 540 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 614 (771)
||++|||++...... ....+..+++ .|+.|+.+|||-+++ ......++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999998764433 3345566664 999999999997544 23345689999999999987 3478
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecCCccch-h----hhh---cCCCCCcc--hhhhhccCCCCCcCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCNL-A----LMV---GTTDIPDW--CYVESYGSKGKDSFT 680 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p~~~~-~----~~~---~~~~~~~~--~~~~~~~~~~~~~~~ 680 (771)
+++|+|+|+|.||.+++.++.... ..++++++.+|+.++ . .+. ...+.+-+ .....+. ..+.
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFW----KLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHH----HHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccc----cccc
Confidence 999999999999999999987432 248999999998765 1 110 00000000 0000000 0000
Q ss_pred CCCChhhHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 681 ESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
. .........+|+.. ..+ -+|++|++|+.|..+ .++..|+++|++.|++++++++++..|.+.
T Consensus 146 ~----~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 146 P----GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp S----TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred c----cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 00001123455544 122 368999999999887 688999999999999999999999999863
No 76
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.65 E-value=5.6e-15 Score=158.74 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=140.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH---HCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
....+.++++....|++ ....|.||++||.+... ..|.. .+..|+ +.+|.|+++|+|| +|.+...
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p--- 249 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKP--- 249 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCC---
Confidence 34445678877777763 23347899999976552 34543 334444 4799999999999 5544211
Q ss_pred CCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-------h-h-cC
Q 004149 590 GKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------M-V-GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-------~-~-~~ 659 (771)
.. .....++..+.+. .+.+. .+.+++.++||||||.+++.++.++|++++++|+.+|...... . . ..
T Consensus 250 ~~-~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~ 326 (481)
T PLN03087 250 AD-SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKV 326 (481)
T ss_pred CC-CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHh
Confidence 00 1123555555552 44444 2457899999999999999999999999999999886432110 0 0 00
Q ss_pred CCCCcch----------hhhhccCCC----------CCc----CCCCCChh-hHH---------------HHhhcC----
Q 004149 660 TDIPDWC----------YVESYGSKG----------KDS----FTESPSVE-DLT---------------RFHSKS---- 695 (771)
Q Consensus 660 ~~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~-~~~---------------~~~~~s---- 695 (771)
.....|. ..+...... ... ........ ..+ .+....
T Consensus 327 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l 406 (481)
T PLN03087 327 APRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKL 406 (481)
T ss_pred cccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhh
Confidence 0000000 000000000 000 00000000 000 000000
Q ss_pred -c-c-ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 696 -P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 696 -p-~-~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
. . ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|.+.
T Consensus 407 ~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 407 DGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999998888777754 78999999999866545556788888888753
No 77
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.65 E-value=1.5e-15 Score=154.89 Aligned_cols=238 Identities=13% Similarity=0.147 Sum_probs=140.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+|..+.++++.|.+ . +.+.||++|||+.... ...+...++.|+++||.|+++|+||. |.+... .. ..
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~---G~S~~~--~~-~~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGM---GDSEGE--NL-GF 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCC---CCCCCC--CC-CH
Confidence 356789999999863 2 2356777787654321 22345567889999999999999994 443211 01 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++.++. ...++|+++|||+||.+++.++.. +..++++|+.+|............. ...+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~-~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI-RHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH-HHHHHHHHhC
Confidence 123678999999987652 123679999999999999988765 5679999999987431110000000 0000000000
Q ss_pred -CCCCc-CCCCCChh-hHHHHhh----c---C-----------ccccccCCCCcEEEEeeCCCCccCcHHH-----HHHH
Q 004149 674 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 727 (771)
Q Consensus 674 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~P~Lii~G~~D~~vp~~~~-----~~~~ 727 (771)
..... ..+..... ....+.. . . -...+.++++|+|+++|+.|...+.... ..+.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987531110 1222
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+.+.. ..+++..+++++|.+.....+.++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22221 3588999999999887777778899999999963
No 78
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.64 E-value=5.3e-15 Score=152.43 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+... ......++++.+.+..+++.. +.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~---G~S~~~----~~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGH---GFTRAP----FRFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCC---CCCCCc----cccCCCHHHHHHHHHHHHHHc--CC
Confidence 35889999997654 4467777777755 699999999994 443211 111234556655555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh---------h---cCCCCC-cchhhhhccCCCCCcCC--
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------V---GTTDIP-DWCYVESYGSKGKDSFT-- 680 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------~---~~~~~~-~~~~~~~~~~~~~~~~~-- 680 (771)
+++.|+||||||.+++.++.++|++++++|+.++......- . ...... .+.............+.
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999989988887765421100 0 000000 00000000000000000
Q ss_pred --CCCChhhH-----------------HHHhhcC---ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004149 681 --ESPSVEDL-----------------TRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 681 --~~~~~~~~-----------------~~~~~~s---p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
........ ..+.... ....++++++|+|+++|++|..+|++.++.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 00000000 0000000 1224567889999999999999999888887666543 68
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 739 VIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+..++++||.+... ...++.+.|.+||+
T Consensus 251 ~~~~~~~gH~~~~e-~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEE-QADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCccccc-CHHHHHHHHHHHhC
Confidence 88999999987644 45678888888874
No 79
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.64 E-value=1e-15 Score=156.11 Aligned_cols=222 Identities=18% Similarity=0.216 Sum_probs=140.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---------HHHHHHHCCcEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---------SLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---------~~~~la~~G~~V~~~d~rG~~~~g~~~~~~ 587 (771)
||.+|.+.+|+| +....++.|+||..|+-..... ..... ....|+++||+|+..|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQ-TASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC--HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCC-cccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc-
Confidence 688999999999 4447889999999998442210 00110 11238999999999999998777665421
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hhcCCCC----
Q 004149 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI---- 662 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~---- 662 (771)
....+.+|..++|+|+.++++. ..||+++|.|++|+.++.+|+..|..++|++...+..++.. .......
T Consensus 78 ----~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 78 ----MSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp ----TSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred ----CChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 1566799999999999999754 47999999999999999999988889999999988777643 1111111
Q ss_pred --Ccch----hhhhccCCCC--------------------CcCCCCC--------ChhhHHHHhhcCccccccCCCCcEE
Q 004149 663 --PDWC----YVESYGSKGK--------------------DSFTESP--------SVEDLTRFHSKSPISHISKVKTPTI 708 (771)
Q Consensus 663 --~~~~----~~~~~~~~~~--------------------~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~L 708 (771)
..|. .......... ....... .......+...++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 1120 0000000000 0000000 0001122334445556789999999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004149 709 FLLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 748 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 748 (771)
++.|-.|..+. ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997766 88999999999988 6778888765 674
No 80
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.63 E-value=2e-14 Score=140.49 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=146.8
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
++|..+...+..++ ...+.|.||.+||-.++........++..+.++||.|+++|.||+++.-.. .+.-+-..
T Consensus 57 pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G 129 (345)
T COG0429 57 PDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSG 129 (345)
T ss_pred CCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceeccc
Confidence 34444444444433 345669999999966655444444567788999999999999997654221 12222223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhH-HHHHHHHHhCCC-ceeEEEecCCccchhhhhcCCCCCcc-hhh----
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-CYV---- 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~~~~~~~~~~-~~~---- 668 (771)
..+|+..+++++.+.. -+.++..+|.|+|| +++.+++.+..+ .+.|++..+-..|+.......+...+ .++
T Consensus 130 ~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l 207 (345)
T COG0429 130 ETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL 207 (345)
T ss_pred chhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH
Confidence 4699999999998864 36789999999999 555555543222 23444444433343211110010001 000
Q ss_pred ---------------------------------hhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCC
Q 004149 669 ---------------------------------ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 669 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D 715 (771)
..+.........+. .+..+.|.+.|.+..+.+|++|+||||..+|
T Consensus 208 ~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DD 285 (345)
T COG0429 208 LRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDD 285 (345)
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCC
Confidence 00000001111122 2345677888999999999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CC-Ch-HHHHHHHHHHHHHHh
Q 004149 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQ-SD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~-~~-~~~~~~i~~wl~~~l 770 (771)
++++++..-..... ....+.+...+-+||.-.. .. +. .-..+++.+||+.++
T Consensus 286 P~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 286 PFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99987543332222 4556899999999995321 11 22 134578999999875
No 81
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.63 E-value=5.9e-15 Score=144.92 Aligned_cols=191 Identities=19% Similarity=0.236 Sum_probs=113.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCC---CCCCh---hhhhcCCCCc-cccchhhHH---
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGS---LGFGE---EALQSLPGKV-GSQDVNDVL--- 601 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~V~~~d~rG~---~~~g~---~~~~~~~~~~-~~~~~~D~~--- 601 (771)
..+..|+||++||.+.+. ..+..... .+......++.++-+-. ...|. +|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 356789999999965542 22222222 12235677777764310 11222 4433221111 111223333
Q ss_pred ----HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 602 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ----~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+.++...+.+ ++++||+|+|+|+||.+++.++.++|..++++|+.++..-....
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 3333333333 89999999999999999999999999999999999886421100
Q ss_pred cCCCCCChhhHHHHhhcCccccccC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
. . ..... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.+|.+. .
T Consensus 146 ------~-~-----------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------L-E-----------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------C-H-----------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------c-c-----------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0 0 00011 168999999999999999999999999999999999999999999886 5
Q ss_pred HHHHHHHHHHHHHh
Q 004149 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~wl~~~l 770 (771)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77899999999874
No 82
>PRK11071 esterase YqiA; Provisional
Probab=99.63 E-value=1.4e-14 Score=138.25 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=116.3
Q ss_pred cEEEEEcCCCCCCCCCcch--HHHHHHHH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
|.||++||.+.+. ..|. .....+.+ .+|.|+++|+|| ++ +++.+.+..+.++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHHc--
Confidence 6899999976653 3344 23455555 379999999998 32 23444555555542
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-hhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+... .......... .+.. ..+. ......+...
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~--~~~~~~~d~~ 126 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENEN----PYTG---QQYV--LESRHIYDLK 126 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccc----ccCC---CcEE--EcHHHHHHHH
Confidence 34689999999999999999999883 3 467777766311 1100000000 0000 0000 0112223333
Q ss_pred hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
...+.. +. ...|++++||++|+.||++.+.++++. ++++++++++|.+... ++.++.+.+|+.
T Consensus 127 ~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 127 VMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 333322 33 567899999999999999999999884 3566889999999644 578888999875
No 83
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.62 E-value=2.4e-14 Score=153.64 Aligned_cols=222 Identities=17% Similarity=0.215 Sum_probs=126.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-cchh-hHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 612 (771)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||.+.+.+. . ..... .... .+.+.+..+.+.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~---~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGWGGSSRP---D--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCCCCCCCC---C--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997654 3356666777765 599999999995443221 1 01110 1111 222233222222
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCC-CCcch---------------------
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD-IPDWC--------------------- 666 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~-~~~~~--------------------- 666 (771)
.+.+++.|+||||||++++.++.++|+.++++|+.+|......... ... ...|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 2456899999999999999999999999999998887531110000 000 00000
Q ss_pred ------hhhhccCCCC-CcCCC--CC--ChhhH------------------HHH-----hhcCcc-ccccCCCCcEEEEe
Q 004149 667 ------YVESYGSKGK-DSFTE--SP--SVEDL------------------TRF-----HSKSPI-SHISKVKTPTIFLL 711 (771)
Q Consensus 667 ------~~~~~~~~~~-~~~~~--~~--~~~~~------------------~~~-----~~~sp~-~~~~~i~~P~Lii~ 711 (771)
+...+..... ..... .. ..... ..+ ....+. ..+.++++|+++++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 00000 000 011222 34678899999999
Q ss_pred eCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHhC
Q 004149 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 712 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
|++|.+.+ ....++.+.+ +..+++++++++||... .++...+.+.+.+|++.+|+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~-~E~P~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVF-LDNPSGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeee-ccCHHHHHHHHHHHHHHhcc
Confidence 99998664 5555544433 34578999999999766 44456888999999988763
No 84
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.62 E-value=3e-14 Score=150.88 Aligned_cols=262 Identities=18% Similarity=0.189 Sum_probs=166.4
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 107 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 107 SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
||||++++|..+..+ ....+++.+ ..++.+++....... ..+.|||||+.|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 223455555 444444433321122 5899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---------------C--Cccc
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---------------S--LSVG 243 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---------------~--~~~~ 243 (771)
..+||+.++.+++.++|+ ..+ + ....
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999888888885 111 0 1234
Q ss_pred eEEEecCCCCCccEEEEEeecCcc-----------------eeeeeeeec----cCCceeEEEecccccchhhhhhhhcC
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSET-----------------RKLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~-----------------~~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.+.|||||++ |+|....... ...-+.|+. |....|+++++
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 111122211 23346888887
Q ss_pred CCCCCcceecC------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 303 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 303 ~~~~~~~~~lt------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++++...+. ........+.|++|++.|++....+. .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 666543333 23445788999999997777666542 44677889998886654332111
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEEeCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~d~~~l~~~~s~~ 454 (771)
... |-.....+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|++...
T Consensus 230 ---~~~----Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ---SDG----WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ---SSS----SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ---CCc----ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 010 11112234444 88888999888889999999999999999999887755 4567888999999999763
Q ss_pred C-CCCeEEEEEec
Q 004149 455 V-DVPQVKYGYFV 466 (771)
Q Consensus 455 ~-~p~~l~~~~~~ 466 (771)
+ .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 33457777766
No 85
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.62 E-value=1.5e-14 Score=149.72 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=125.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||++++. ...+......+.+.||.|+++|+||. |.+..... ......++++.+.+..+.+. .+.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G~---G~s~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLGC---GYSDQPDD--SDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCCC---CCCCCCCc--ccccccHHHHHHHHHHHHHH--cCC
Confidence 357899999976553 22334444555556999999999994 43321100 00012355565556555554 244
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-----CCCCCc-ch-hhhhccCCC----------CCc
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 678 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 678 (771)
+++.++||||||.+++.++..+|++++++++.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998887543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 679 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 679 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
+ ........... +........+.++++|+|+++|+.|.. ++.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHH
Confidence 0 00000000000 000111234567899999999999984 5666666655
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+. .+++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 553 36788999999987754 55678888888873
No 86
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.62 E-value=1e-14 Score=149.65 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=131.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
|.+|.++++.|+ .+++.|+||++-| ..+ ....+. ...++|+.+|++++.+|.+|.+. +....+. ...
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs-~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~---s~~~~l~----~D~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDS-LQEDLYRLFRDYLAPRGIAMLTVDMPGQGE---SPKWPLT----QDS 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSGG---GTTT-S-----S-C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cch-hHHHHHHHHHHHHHhCCCEEEEEccCCCcc---cccCCCC----cCH
Confidence 478999999998 5678898887755 322 233333 34457899999999999999543 3211111 111
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hh-hcCCCCCcchhh----hh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LM-VGTTDIPDWCYV----ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~-~~~~~~~~~~~~----~~ 670 (771)
-.-..++++||...+.+|..||+++|.|+||++|..+|..++++++++|+.+|++.-. .- ......|. ++. ..
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~-my~d~LA~r 320 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPD-MYLDVLASR 320 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCH-HHHHHHHHH
Confidence 2234578899999999999999999999999999999988888999999988865321 11 11111111 121 22
Q ss_pred ccCCCCCcCCCCCChh-hHHHHhhcCccc--cc--cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 671 YGSKGKDSFTESPSVE-DLTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~-~~~~~~~~sp~~--~~--~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
++.. ....+ ....+...|... .+ .+.++|+|.+.|++|+++|.++.+.++. .+.+-+...++..
T Consensus 321 lG~~-------~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~ 389 (411)
T PF06500_consen 321 LGMA-------AVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSK 389 (411)
T ss_dssp CT-S-------CE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SS
T ss_pred hCCc-------cCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCC
Confidence 2210 01111 122334444432 23 5677999999999999999888766543 2333455566554
Q ss_pred C-ccCCCCCChHHHHHHHHHHHHHHh
Q 004149 746 V-HGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~-H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
. |.-. ...+..+.+||++.|
T Consensus 390 ~~~~gy-----~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 390 PLHMGY-----PQALDEIYKWLEDKL 410 (411)
T ss_dssp SHHHHH-----HHHHHHHHHHHHHHH
T ss_pred ccccch-----HHHHHHHHHHHHHhc
Confidence 4 5432 467889999999875
No 87
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.61 E-value=2.2e-14 Score=144.79 Aligned_cols=212 Identities=15% Similarity=0.185 Sum_probs=125.5
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 616 (771)
|+||++||.+.. ...|...+..|+ .||.|+++|+||.+.... +........+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQS------PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCC------CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997655 446777888887 899999999999544311 111122345555544 5555544 3467
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcc----------hhhhhccC-CCCCcCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDW----------CYVESYGS-KGKDSFTE 681 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~----------~~~~~~~~-~~~~~~~~ 681 (771)
++.++|||+||.+++.++.++|+.++++++.++......... ......+ .+...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 899999999999999999999999999998887543211000 0000000 00000000 00000000
Q ss_pred CCC---------------hhhHHHHh------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004149 682 SPS---------------VEDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 682 ~~~---------------~~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
... ......+. ..+....+.++++|+|+++|++|..++ .. .+.+.+...+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 000 00000000 112223456789999999999998763 22 23344444557899
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 741 VFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.++++||.+.... ..++...+.+||
T Consensus 226 ~~~~~gH~~~~e~-~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLEN-PEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccC-hHHHHHHHHHHh
Confidence 9999999876443 457777788776
No 88
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.60 E-value=5.7e-15 Score=148.70 Aligned_cols=207 Identities=17% Similarity=0.217 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|+ .+|.|+++|+||. |.+.. .....++++ ++.+.+.. .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~---G~s~~------~~~~~~~~~---~~~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGH---GRSRG------FGPLSLADA---AEAIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcC---ccCCC------CCCcCHHHH---HHHHHHhC---CC
Confidence 3779999996654 446777777775 4799999999994 43321 111233443 44444432 36
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC-CCC-------------cch-hhhh------ccCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVES------YGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~-~~~-------------~~~-~~~~------~~~~~ 675 (771)
++.++||||||.+++.++.++|++++++|+.++........... ... .+. .... +....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999876643211000000 000 000 0000 00000
Q ss_pred CC--------cCC--CCCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 676 KD--------SFT--ESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~--------~~~--~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.. .+. ..+.... ...+...+....+.++++|+|+++|++|..+|++..+.+.+.+. ++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 000 0000000 01111112223467899999999999999999888777766654 478899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHH
Q 004149 742 FPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++++||..... ...++.+.+.+|+
T Consensus 222 ~~~~gH~~~~e-~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFLS-HAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCcccc-CHHHHHHHHHhhC
Confidence 99999987654 4567888888774
No 89
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.59 E-value=3.5e-14 Score=146.12 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=125.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|. .+|.|+++|+||.+.++. +.. .....+++.+.+..+++.. +.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~------~~~-~~~~~~~~~~~~~~~~~~~--~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLGFGLSER------PSG-FGYQIDEHARVIGEFVDHL--GLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCCCCCCCC------CCc-cccCHHHHHHHHHHHHHHh--CCC
Confidence 4789999997643 345666677775 469999999999443321 111 1234677777777777653 457
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---------hhhcCCCCCcch-----hhhhccCCCCCcCCCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWC-----YVESYGSKGKDSFTES 682 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 682 (771)
++.++||||||.+++.++..+|++++++|+.++..-.. ............ +...+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643100 000000000000 00000000 00000
Q ss_pred CChhhHHHHh--------------------hcCc-ccc----cc--CCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCC
Q 004149 683 PSVEDLTRFH--------------------SKSP-ISH----IS--KVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 734 (771)
Q Consensus 683 ~~~~~~~~~~--------------------~~sp-~~~----~~--~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~g 734 (771)
........+. ...+ ... +. .+++|+|+++|++|..+++.. ++.+.+.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 0000 000 11 127999999999999886653 4555555543
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.++++++++||.... +...++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~-e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQE-DAPDRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCcccccc-cCHHHHHHHHHHhc
Confidence 688899999998774 45557888888886
No 90
>PRK06489 hypothetical protein; Provisional
Probab=99.59 E-value=1.6e-14 Score=153.84 Aligned_cols=221 Identities=19% Similarity=0.232 Sum_probs=126.1
Q ss_pred CcEEEEEcCCCCCCCCCcch--HHHHHH-------HHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhHHHHH-
Q 004149 537 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 604 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~V~~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~~~~i- 604 (771)
.|.||++||++.+. ..|. .....| ...+|.|+++|+||. |.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~Gh---G~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSG--KSFLSPTFAGELFGPGQPLDASKYFIILPDGIGH---GKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCch--hhhccchhHHHhcCCCCcccccCCEEEEeCCCCC---CCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 57899999977652 2232 222222 256899999999994 443211000 001123455655443
Q ss_pred HHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccch--------hhh-h-cCCCCCcc--------
Q 004149 605 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 665 (771)
Q Consensus 605 ~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 665 (771)
..+.+. .+.+++. |+||||||++++.++.++|++++++|+.++.... ... . .......+
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334343 2345664 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhhhccCC--------CCC------c----CC--CCCChhhH----HHHhhcCccccccCCCCcEEEEeeC
Q 004149 666 --C------YVESYGSK--------GKD------S----FT--ESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 666 --~------~~~~~~~~--------~~~------~----~~--~~~~~~~~----~~~~~~sp~~~~~~i~~P~Lii~G~ 713 (771)
. ........ ... . .. ........ ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 00000000 000 0 00 00000000 0001122234567899999999999
Q ss_pred CCCccCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHHHHHh
Q 004149 714 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 714 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+|..+|++.+ +.+.+.+.+ .++++++++ ||... +....+.+.+.+||++.-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998865 566665543 689999996 99875 466788899999998754
No 91
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.59 E-value=4.2e-14 Score=126.25 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=132.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
+|.-..+++.. .|. .....|+.|.+|--|... ...-....+..|.++||+++.+||||.+.+..+| .
T Consensus 10 ~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D 79 (210)
T COG2945 10 NGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------D 79 (210)
T ss_pred cCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------c
Confidence 44444566544 444 356789999999744322 2223344667889999999999999987776554 3
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
.|.-+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++.+.|+ ....+...|.++...
T Consensus 80 ~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d---------------- 141 (210)
T COG2945 80 NGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD---------------- 141 (210)
T ss_pred CCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh----------------
Confidence 444578999999999998752 23335789999999999999998765 344455555443100
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
...+....+|.++++|+.|.++++....+..+. .+.+++.+++++|.|..
T Consensus 142 -------------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g 191 (210)
T COG2945 142 -------------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG 191 (210)
T ss_pred -------------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc
Confidence 012233457999999999998877665554443 56789999999998863
Q ss_pred CCChHHHHHHHHHHHH
Q 004149 752 PQSDFESFLNIGLWFK 767 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~ 767 (771)
. ...+.+.+.+|+.
T Consensus 192 K--l~~l~~~i~~~l~ 205 (210)
T COG2945 192 K--LIELRDTIADFLE 205 (210)
T ss_pred c--HHHHHHHHHHHhh
Confidence 3 2356677888873
No 92
>PLN00021 chlorophyllase
Probab=99.59 E-value=1.1e-13 Score=141.86 Aligned_cols=182 Identities=20% Similarity=0.231 Sum_probs=123.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
.++.+.++.|. ..++.|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 45778999999997654 44677788899999999999999873211 0122356
Q ss_pred hHHHHHHHHHHc--------CCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcc
Q 004149 599 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 599 D~~~~i~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
++.++++|+.+. ..+|.++++|+|||+||.+++.++..+++ .++++++..|+....... .+.
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~~---- 175 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QTP---- 175 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CCC----
Confidence 677777777652 22567899999999999999999988764 578888888875421100 000
Q ss_pred hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC-----cc----CcH-HHHHHHHHHHhCCC
Q 004149 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----RV----PVS-NGLQYARALREKGV 735 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-----~v----p~~-~~~~~~~~l~~~g~ 735 (771)
+.. ....+ ..-.+..|+|++++..|. .+ |.. +..+|+++.+ .
T Consensus 176 -----------------p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~---~ 227 (313)
T PLN00021 176 -----------------PPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECK---A 227 (313)
T ss_pred -----------------Ccc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcC---C
Confidence 000 00001 112367999999999763 22 232 3366776654 3
Q ss_pred CEEEEEeCCCCccC
Q 004149 736 ETKVIVFPNDVHGI 749 (771)
Q Consensus 736 ~~~~~~~~~~~H~~ 749 (771)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 67888999999963
No 93
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.58 E-value=3.4e-14 Score=150.96 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=140.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---------cchHHH---HHHHHCCcEEEEECCCCC-CC-CCh
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LG-FGE 582 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~V~~~d~rG~-~~-~g~ 582 (771)
+|.++++..+-+++ ....|+||++||.+.+.... .|...+ ..|...+|.|+++|+||. .+ .+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 35667766665431 12347899999966542111 233333 245568899999999993 22 221
Q ss_pred hhhhcC----CCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--
Q 004149 583 EALQSL----PGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-- 655 (771)
Q Consensus 583 ~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-- 655 (771)
+..... ..+.....++|+.+.+..+++.. ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 168 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC 168 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH
Confidence 110000 00111345677777766666553 3467 99999999999999999999999999998887543110
Q ss_pred --h------hcCC--C-----C-----Ccchh--hhh-----ccC-C-CCCcCCCC------C--------ChhhH----
Q 004149 656 --M------VGTT--D-----I-----PDWCY--VES-----YGS-K-GKDSFTES------P--------SVEDL---- 688 (771)
Q Consensus 656 --~------~~~~--~-----~-----~~~~~--~~~-----~~~-~-~~~~~~~~------~--------~~~~~---- 688 (771)
. .... . . +.+.+ ... +.. . ....+... + ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T TIGR01392 169 IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQ 248 (351)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHH
Confidence 0 0000 0 0 00000 000 000 0 00000000 0 00000
Q ss_pred -----------------HHHhhcCc-------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE-eC
Q 004149 689 -----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FP 743 (771)
Q Consensus 689 -----------------~~~~~~sp-------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~~ 743 (771)
..+...+. ...+.+|++|+|+|+|+.|..+|+..++.+.+.+.+....++++. ++
T Consensus 249 ~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~ 328 (351)
T TIGR01392 249 GDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIES 328 (351)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCC
Confidence 01111111 234678899999999999999999999999999987544444444 46
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
++||..... ...++.+.+.+||+
T Consensus 329 ~~GH~~~le-~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 329 PYGHDAFLV-ETDQVEELIRGFLR 351 (351)
T ss_pred CCCcchhhc-CHHHHHHHHHHHhC
Confidence 899987643 44577778888863
No 94
>PRK07581 hypothetical protein; Validated
Probab=99.58 E-value=1.7e-14 Score=152.80 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=126.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-----ccc-hhhHHHHHHH
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-----SQD-VNDVLTAIDH 606 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~-----~~~-~~D~~~~i~~ 606 (771)
+.|+||++||+++... .+...+ ..|...+|.|+++|+||.+.+.... .....+. ... .+|+.+....
T Consensus 40 ~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (339)
T PRK07581 40 KDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPS--NTPAPFNAARFPHVTIYDNVRAQHRL 115 (339)
T ss_pred CCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCCCCCCCCCC--CCCCCCCCCCCCceeHHHHHHHHHHH
Confidence 4477777777554321 232222 2565678999999999954332111 0000111 111 2444443444
Q ss_pred HHHcCCCCCCeE-EEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh------------hhcCCCCCc---------
Q 004149 607 VIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDIPD--------- 664 (771)
Q Consensus 607 l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~------------~~~~~~~~~--------- 664 (771)
+.+. ...+++ .|+||||||++++.++.++|++++++|+.++...... +........
T Consensus 116 l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 193 (339)
T PRK07581 116 LTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPER 193 (339)
T ss_pred HHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHH
Confidence 5443 234674 7899999999999999999999999998865432100 000000000
Q ss_pred --------ch---hhhhc-cCCCCCc----------------CCCCCChhhHHH----Hhh----------cCccccccC
Q 004149 665 --------WC---YVESY-GSKGKDS----------------FTESPSVEDLTR----FHS----------KSPISHISK 702 (771)
Q Consensus 665 --------~~---~~~~~-~~~~~~~----------------~~~~~~~~~~~~----~~~----------~sp~~~~~~ 702 (771)
+. +...+ ....... ............ +.. .+....+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~ 273 (339)
T PRK07581 194 GLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGS 273 (339)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhc
Confidence 00 00000 0000000 000000000000 000 011234667
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+++|+|+++|++|..+|+..++.+.+.+.+ .+++++++ +||.....+. .++...|.+|+++++
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~-~~~~~~~~~~~~~~~ 337 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQN-PADIAFIDAALKELL 337 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCc-HHHHHHHHHHHHHHH
Confidence 899999999999999999988887776643 68889998 8997765444 478889999999876
No 95
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.58 E-value=2.6e-14 Score=145.21 Aligned_cols=206 Identities=20% Similarity=0.205 Sum_probs=125.0
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+|| +|.+.. . .....+++. +.+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~---~~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMA---EAVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHH---HHHHhc---CCCC
Confidence 569999997655 4577778888865 59999999999 444321 1 112233333 344433 2478
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCC-cc-------------hhhhh------ccCCCC-
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~- 676 (771)
+.++||||||.+++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999887642210000000000 00 00000 000000
Q ss_pred -------CcCCC--CCChhh----HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 677 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 677 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..... .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+. +.++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeC
Confidence 00000 000000 01112223334577889999999999999999887766666554 37899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHH
Q 004149 744 NDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
++||.... +....+.+.+.+|-
T Consensus 232 ~~gH~~~~-e~p~~f~~~l~~~~ 253 (256)
T PRK10349 232 KAAHAPFI-SHPAEFCHLLVALK 253 (256)
T ss_pred CCCCCccc-cCHHHHHHHHHHHh
Confidence 99998774 45557777777764
No 96
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.58 E-value=6.8e-15 Score=146.13 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
||++||.+.+ ...|...+..| ++||.|+++|+||.+. +.... .......++..+.+..+++.. ..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~G~---s~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPGHGR---SDPPP---DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTTSTT---SSSHS---SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCCccc---ccccc---ccCCcchhhhhhhhhhccccc--cccccc
Confidence 7999997766 35788888888 5899999999999444 32111 112234555555555555542 337899
Q ss_pred EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc-------CCCCCcch--hhhhccCCCCCcCCCCCC------
Q 004149 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWC--YVESYGSKGKDSFTESPS------ 684 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~------ 684 (771)
++|||+||.+++.++.++|++++++|+.+|......... ......+. ....+.............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 00000000 000000000000000000
Q ss_pred --hhhHHH-----HhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 685 --VEDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 685 --~~~~~~-----~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...... ....+....+.++++|+++++|++|..++.+..+.+.+.+ .+++++++++++|.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCccH
Confidence 000000 1122333566788999999999999999866666665554 3589999999999865
No 97
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.57 E-value=9.8e-14 Score=144.54 Aligned_cols=229 Identities=19% Similarity=0.230 Sum_probs=133.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..++...+.+ .+.+.||++||++.... .......+...+|.|+++|+|| +|.+.... ......
T Consensus 13 ~~~~l~y~~~g~------~~~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~~ 77 (306)
T TIGR01249 13 DNHQLYYEQSGN------PDGKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEENT 77 (306)
T ss_pred CCcEEEEEECcC------CCCCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccCC
Confidence 466666544321 12356899999776532 2233344556789999999999 55443111 111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh----hh--cCC----------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV--GTT---------- 660 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~----~~--~~~---------- 660 (771)
.+++.+.+..+.+.. +.+++.++||||||.+++.++.++|++++++|+.++...... .. +..
T Consensus 78 ~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (306)
T TIGR01249 78 TWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRF 155 (306)
T ss_pred HHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHH
Confidence 556666666666552 446899999999999999999999999999888876432100 00 000
Q ss_pred --CCC-cc---hhhhh----ccCC------------------CCCcCCCC--C---ChhhHHHHhh-----------cC-
Q 004149 661 --DIP-DW---CYVES----YGSK------------------GKDSFTES--P---SVEDLTRFHS-----------KS- 695 (771)
Q Consensus 661 --~~~-~~---~~~~~----~~~~------------------~~~~~~~~--~---~~~~~~~~~~-----------~s- 695 (771)
..+ .. .+... +... ........ . .......+.. .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (306)
T TIGR01249 156 MDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDV 235 (306)
T ss_pred hhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcC
Confidence 000 00 00000 0000 00000000 0 0000000000 00
Q ss_pred ---ccccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 696 ---PISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 ---p~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
-...+.++ ++|+|++||++|..+|++.++++++.+.. .++++++++||.... .+..+.+.+|+..+|
T Consensus 236 ~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~----~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 236 ENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFD----PNNLAALVHALETYL 306 (306)
T ss_pred chHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCC----hHHHHHHHHHHHHhC
Confidence 11234566 58999999999999999998888877653 688899999998753 345688888888765
No 98
>PLN02872 triacylglycerol lipase
Probab=99.57 E-value=3e-14 Score=150.54 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=151.1
Q ss_pred cccCcccccccCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc----chHHHHHHHHCCcEEEEECCCCCCC
Q 004149 505 PVKGVSANLTKGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 505 ~~~~~~~~~~~~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
|+++..+++ .||..+....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+.
T Consensus 43 ~~e~h~v~T--~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~ 120 (395)
T PLN02872 43 SCTEHTIQT--KDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRW 120 (395)
T ss_pred CceEEEEEC--CCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccccc
Confidence 444433344 4566666556543321 12234688999999765432211 1234556889999999999999642
Q ss_pred -CChhhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCc
Q 004149 580 -FGEEALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPL 650 (771)
Q Consensus 580 -~g~~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~ 650 (771)
+|......... .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+
T Consensus 121 s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~ 196 (395)
T PLN02872 121 SYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPI 196 (395)
T ss_pred ccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcch
Confidence 22211111111 111222469999999997652 36899999999999998555 4565 46677777776
Q ss_pred cchhh----------------h---hcCCCC-C-cc---------h---------hhhhccCC-----------------
Q 004149 651 CNLAL----------------M---VGTTDI-P-DW---------C---------YVESYGSK----------------- 674 (771)
Q Consensus 651 ~~~~~----------------~---~~~~~~-~-~~---------~---------~~~~~~~~----------------- 674 (771)
..+.. + .+.... + .. | +....+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pa 276 (395)
T PLN02872 197 SYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPH 276 (395)
T ss_pred hhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCC
Confidence 43200 0 010000 0 00 0 00000000
Q ss_pred -----------------CCCcCCCCCChhhHHHHhhcC-ccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004149 675 -----------------GKDSFTESPSVEDLTRFHSKS-PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 675 -----------------~~~~~~~~~~~~~~~~~~~~s-p~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
..+.|.-. ...+...|-... |...+.++ ++|+++++|++|..+++..+..+.+.+..
T Consensus 277 gtS~k~~~H~~Q~~~s~~f~~yDyg-~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~-- 353 (395)
T PLN02872 277 PSSVKNLRHLFQMIRKGTFAHYDYG-IFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS-- 353 (395)
T ss_pred cchHHHHHHHHHHHhcCCcccCCCC-chhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC--
Confidence 00001000 112222333333 34567788 57999999999999999988888887754
Q ss_pred CCEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHHhC
Q 004149 735 VETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~l~ 771 (771)
..++..+++.+|. +...+...++++.|++||+++++
T Consensus 354 -~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 354 -KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred -ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 2577889999997 44566677899999999998753
No 99
>PLN02578 hydrolase
Probab=99.57 E-value=8.3e-14 Score=147.93 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=123.7
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-chhhHHHHHHHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|.||++||.+.+ ...|...+..|++ +|.|+++|+||.+.+... ...+... ..+++.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~~-~~~v~~~D~~G~G~S~~~-----~~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELAK-KYKVYALDLLGFGWSDKA-----LIEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996654 4466677777754 699999999995544321 1111111 123444444433 246
Q ss_pred eEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC--------CCCCcchhhh-------------------
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVE------------------- 669 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~--------~~~~~~~~~~------------------- 669 (771)
++.++|||+||++++.++.++|++++++|+.++.......... ..........
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999988764321100000 0000000000
Q ss_pred -----------hccC-CCCCcC--------CCCCC-hhh-HH---HHh----hcCccccccCCCCcEEEEeeCCCCccCc
Q 004149 670 -----------SYGS-KGKDSF--------TESPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 670 -----------~~~~-~~~~~~--------~~~~~-~~~-~~---~~~----~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 720 (771)
.+.. .....+ ...+. ... .. .+. .......+.++++|+|+++|++|.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000 000000 00000 000 00 000 1112234678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.+.++.+.+.+ .+++++ ++||.+.. +...++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~-e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHD-EVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCccc-cCHHHHHHHHHHHHh
Confidence 888877776643 577777 68998764 445588899999985
No 100
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.57 E-value=4.4e-14 Score=152.18 Aligned_cols=213 Identities=15% Similarity=0.211 Sum_probs=128.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.+.. ...|......|.+ +|.|+++|+||.+.+... .......++.+.+..+.+. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4467677777755 599999999995443211 1123466666666666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh-------hcCCCCCc-c--hhhhhccC-CCCC------
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------VGTTDIPD-W--CYVESYGS-KGKD------ 677 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~-------~~~~~~~~-~--~~~~~~~~-~~~~------ 677 (771)
..++.|+|||+||.+++.++.++|++++++++.+|....... ........ . .+...+.. ....
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVED 275 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHH
Confidence 678999999999999999999999999999988875321100 00000000 0 00000000 0000
Q ss_pred --cCCCCCC-hhhHHHH----h-----hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004149 678 --SFTESPS-VEDLTRF----H-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 678 --~~~~~~~-~~~~~~~----~-----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.+..... ......+ . ..+....+.++++|+|+++|++|..+|+.++..+. ..+++.+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~ 348 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGA 348 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCC
Confidence 0000000 0000000 0 01112246678999999999999999987765432 23788899999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004149 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
||..... ....+.+.|.+||++
T Consensus 349 gH~~~~e-~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 349 GHMPQME-AAADVNRLLAEFLGK 370 (371)
T ss_pred CCChhhh-CHHHHHHHHHHHhcc
Confidence 9977644 445677778888865
No 101
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.56 E-value=6.6e-14 Score=126.55 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=135.8
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+...+||++||.-...........+.+|++.||.++.+|++|.+++..++. ++ .+..+++|+...++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccCc---
Confidence 456789999996554433344457788999999999999999777665543 22 33456799999999986531
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhhccCCC--CCcCCCCCChhhHH
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKG--KDSFTESPSVEDLT 689 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 689 (771)
.---+|+|||-||-.++.++.++++ +.-++.+++-.+........ +...|....-+.... ...+......+...
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlm 182 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLM 182 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHH
Confidence 1123699999999999999999887 67777777766654433211 111111111110000 01111111222222
Q ss_pred HHhhcCcccccc--CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004149 690 RFHSKSPISHIS--KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 690 ~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
.....+....-. ..+||+|-+||..|.+||.+.+.+|++.+.. .++.+++|++|++...+..
T Consensus 183 drLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 183 DRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 222222211112 2359999999999999999999999999876 6899999999999865543
No 102
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.56 E-value=5.4e-14 Score=134.67 Aligned_cols=193 Identities=21% Similarity=0.155 Sum_probs=119.8
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccch
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 597 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~V~~~d~rG~~~~g~~~~~-~~~~~~~~~~~ 597 (771)
.+.+|.|+.. +.++.|+||++||..... ..+.. +.+.-.++||+|+.|+..........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a--~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSA--EDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCH--HHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 4678999864 334789999999976653 22221 22333468999999996432212222210 11122333456
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
..+...++++..+..+|++||++.|+|.||.++..++..+|++|+++.+.+++.--.. .+.... .... .
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a----~~~~~a--~~~m-----~ 147 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA----ASGASA--LSAM-----R 147 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc----cCcccH--HHHh-----h
Confidence 6778889999999889999999999999999999999999999999988877532110 000000 0000 0
Q ss_pred cCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ...+...........+. ... ..|++|+||+.|..|.+..+.++.+++...
T Consensus 148 ~-g~~~~p~~~~~a~~~~g--~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 148 S-GPRPAPAAAWGARSDAG--AYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred C-CCCCChHHHHHhhhhcc--CCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 0 00011111111111110 111 259999999999999999999998888763
No 103
>COG0400 Predicted esterase [General function prediction only]
Probab=99.56 E-value=1.7e-13 Score=129.80 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=129.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc----ccchhhHHHHHHHH
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~-~~~~~----~~~~~D~~~~i~~l 607 (771)
.....|+||++||-+.. ...+....... .-.+.++.+.-+-.-..+..|.... ...+. ....+.+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 34567899999996543 33343322222 3346666655332211122111111 11111 11234455666666
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhh
Q 004149 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..++.+|+.++|+|.|+.+++.++.++|+.++++++.+|..-...
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~-------------------------------- 138 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP-------------------------------- 138 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------
Confidence 667778999999999999999999999999999999999888642110
Q ss_pred HHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
......-.+|+|++||+.|++||...+.++.+.|++.|.++++..++ .||.+. .+.++.+..|+.
T Consensus 139 ---------~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 139 ---------ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ---------ccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 00011234799999999999999999999999999999999999998 899986 567788889998
Q ss_pred HHh
Q 004149 768 KYC 770 (771)
Q Consensus 768 ~~l 770 (771)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 764
No 104
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=135.07 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=125.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCCcchHH-------HHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKS-------LAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~-p~vv~~HGg~~~~~~~~~~~~-------~~~la~~G~~V~~~d~rG~~~~g~~~~~ 586 (771)
...|.++.+.+|.|+++.+++++ |+|+|+||++..... ..... +...-+-+|-|++|.|--. +..+
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~--- 241 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS--- 241 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc---
Confidence 34578899999999999999998 999999997655322 11111 1112244567777775421 1111
Q ss_pred cCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcc
Q 004149 587 SLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.+............+. -+.+++.+|.+||+++|.|+||+.++.++.++|+.|+|++++++--+..
T Consensus 242 ---e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v----------- 307 (387)
T COG4099 242 ---EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV----------- 307 (387)
T ss_pred ---ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-----------
Confidence 0111112334444444 6677888999999999999999999999999999999999888753210
Q ss_pred hhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..++. -++|+.+.|+.+|+.+|.+.++-++..|+..+.++++..|.
T Consensus 308 --------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 --------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24799999999999999999999999999988888776665
No 105
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.56 E-value=9e-14 Score=147.52 Aligned_cols=236 Identities=12% Similarity=0.144 Sum_probs=140.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~---~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+..+.|.|... ....+.||++||-... .....+...+..|+++||.|+++|+||. |.+.. .........
T Consensus 48 ~~l~~~~~~~~--~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD--NTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC--cCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44456666521 1223348888984221 1122345688899999999999999983 33211 111111123
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-----------------C
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 660 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-----------------~ 660 (771)
+++.++++++.++. +.+++.++||||||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45778899988764 4568999999999999999999999999999999887764221000 0
Q ss_pred CCCcchhhhhc--------------------cC-CCCCc-------CCCCCC--hhhHH----HHhhcCc----------
Q 004149 661 DIPDWCYVESY--------------------GS-KGKDS-------FTESPS--VEDLT----RFHSKSP---------- 696 (771)
Q Consensus 661 ~~~~~~~~~~~--------------------~~-~~~~~-------~~~~~~--~~~~~----~~~~~sp---------- 696 (771)
.++.+.....+ .. ..... +...+. ..... .....+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 01111000000 00 00000 000000 00000 0001111
Q ss_pred -cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHH
Q 004149 697 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 697 -~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~wl~~~ 769 (771)
...+.++++|+|+++|++|.++|++.+..+++.+.. .++++++++ +||... ......+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 112557889999999999999999999988887753 357778887 567533 3334578999999999863
No 106
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=148.11 Aligned_cols=246 Identities=15% Similarity=0.158 Sum_probs=142.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-C
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-G 581 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~V~~~d~rG~-~~~-g 581 (771)
|..+++..+-.. .....|+||++||.+.+.... .|..++ ..|...+|.|+++|++|. ++. +
T Consensus 32 ~~~~~y~~~G~~---~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~ 108 (379)
T PRK00175 32 PVELAYETYGTL---NADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTG 108 (379)
T ss_pred CceEEEEecccc---CCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCC
Confidence 445555554321 122358999999977654210 133333 133356899999999983 221 2
Q ss_pred hhhhhc---CC--CCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh
Q 004149 582 EEALQS---LP--GKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~---~~--~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~ 655 (771)
.+.... .+ .......++++.+.+..+++.. +.++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 186 (379)
T PRK00175 109 PSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSA 186 (379)
T ss_pred CCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCH
Confidence 111000 00 0111345677776666666653 3456 48999999999999999999999999999886542110
Q ss_pred h---------hcCCCCCcc-------------------------------hhhhhccCCCCCcC--CCC---CChhhH--
Q 004149 656 M---------VGTTDIPDW-------------------------------CYVESYGSKGKDSF--TES---PSVEDL-- 688 (771)
Q Consensus 656 ~---------~~~~~~~~~-------------------------------~~~~~~~~~~~~~~--~~~---~~~~~~-- 688 (771)
. ......+.| .+...+........ ... ...+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 266 (379)
T PRK00175 187 QNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLR 266 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHH
Confidence 0 000000000 00000100000000 000 000000
Q ss_pred -------------------HHHhhcC--------ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004149 689 -------------------TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 689 -------------------~~~~~~s--------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++
T Consensus 267 ~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~ 346 (379)
T PRK00175 267 YQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAE 346 (379)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000011 1234578899999999999999999999999999988777778887
Q ss_pred eC-CCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 742 FP-NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~-~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
++ ++||..... ...++.+.+.+||++.
T Consensus 347 i~~~~GH~~~le-~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 347 IDSPYGHDAFLL-DDPRYGRLVRAFLERA 374 (379)
T ss_pred eCCCCCchhHhc-CHHHHHHHHHHHHHhh
Confidence 75 899987644 4457889999999764
No 107
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.55 E-value=1e-13 Score=140.27 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=156.4
Q ss_pred CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceee
Q 004149 82 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 82 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.+|||..+-.+...+-..+.|.+||++|+|.++.+ +..++|.++ ..++.+++|+.+.... .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-T---------TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCc---------cceEE
Confidence 344667887665333333455689999999999998876 888999999 8888899998753321 26779
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc---------------CC------c---CcccCCcc
Q 004149 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE---------------ED------W---GETYAGKR 216 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~d------~---g~~~~~~~ 216 (771)
||+.+.|+|+........ .+....+..........|++...|. .| | .+.+....
T Consensus 89 s~~~~~~~Yv~~~~~l~~--vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLRR--VDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp -TTSSEEEEEETTTEEEE--EETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred ecCCCeEEEEECCCeEEE--EECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 999999999764321110 1111111111111122233212221 11 1 12223334
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+.+|+.+.+ .....-.+.+.+||..... |.|.- +..- ..-..+||.++.
T Consensus 167 ~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~l---i~fCH-EGpw--------~~Vd~RiW~i~~--------- 223 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPTL---IMFCH-EGPW--------DLVDQRIWTINT--------- 223 (386)
T ss_dssp -EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEEE---EEEEE--S-T--------TTSS-SEEEEET---------
T ss_pred CceEEEEECCCCceeEE--EecCccccCcccCCCCCCE---EEEec-cCCc--------ceeceEEEEEEc---------
Confidence 57899999999999998 6666677899999965541 55542 2211 012348999997
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+++..+.+... ...+...-|+|||++|+|.+... | ....-|..+|+.+++.+.+.....
T Consensus 224 --------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~~~~~~~p~----- 284 (386)
T PF14583_consen 224 --------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGERRRLMEMPW----- 284 (386)
T ss_dssp --------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--EEEEEEE-S-----
T ss_pred --------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCceEEEeCCc-----
Confidence 66666665543 23477889999999999987744 2 224468888888876543211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCC--------
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAES-------- 433 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~-------- 433 (771)
...+.-++||+.++=-... .+..-||.+++.+++...|.....
T Consensus 285 ----------------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 285 ----------------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp ----------------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ----------------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 0122235677633221111 112257888998888776654321
Q ss_pred ---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 434 ---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 434 ---~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+-.+.|||||++|+|.+.- ..++.||++.+.
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred CccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 24457999999999998765 677889998865
No 108
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.55 E-value=9.6e-13 Score=131.05 Aligned_cols=220 Identities=11% Similarity=0.053 Sum_probs=132.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
++....+.++++.|. ..++.|+||++||.+.... ...|...+..|+++||.|+++|+||.+.+.... .. ..
T Consensus 6 ~~~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~---~~-~~ 78 (266)
T TIGR03101 6 DAPHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDF---AA-AR 78 (266)
T ss_pred cCCCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCcc---cc-CC
Confidence 334445778888776 3345789999999654321 224555678899999999999999954332111 11 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC----------C-C
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------T-D 661 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~----------~-~ 661 (771)
.....+|+..+++++.+.+ ..+|+|+||||||.+++.++.++|+.++++|+.+|+.+...+... . .
T Consensus 79 ~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 79 WDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 1123688888999987763 468999999999999999999999999999999998764322110 0 0
Q ss_pred CCcc---hhhhhccCCCCCcCCCCC-ChhhHHHHhhcCccccccCCCCcEEEEeeCCCC-ccCcHHHHHHHHHHHhCCCC
Q 004149 662 IPDW---CYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-RVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 662 ~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-~vp~~~~~~~~~~l~~~g~~ 736 (771)
.... ...+.......-.+.+.. ..+....+...+....... ..++|++.-+.+. --......++.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 000010000000011111 1122222222222111111 4567777654322 22334567889999999999
Q ss_pred EEEEEeCCC
Q 004149 737 TKVIVFPND 745 (771)
Q Consensus 737 ~~~~~~~~~ 745 (771)
++...+++-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999886
No 109
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.55 E-value=2.3e-13 Score=133.84 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=134.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.+|++||.+.+ ...|...+..|++ ...|.++|++| +|++.+..+..+. ......+.+.|+.....- +
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~-~~~e~~fvesiE~WR~~~--~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDP-TTAEKEFVESIEQWRKKM--G 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCc-ccchHHHHHHHHHHHHHc--C
Confidence 455668999995443 3456667778877 79999999999 6766654444332 222345555565444432 3
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh----hcCCCCCcch-----------------hhhhccC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWC-----------------YVESYGS 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~ 673 (771)
.++..|+|||+||+++..+|.+||++++.+|+.+|.--.... ......+.|. ....+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 568999999999999999999999999999999986422111 0001111121 0011111
Q ss_pred CCCC--------cCCCCCChhhHHHHh-----------------------hcCcc-ccccCCC--CcEEEEeeCCCCccC
Q 004149 674 KGKD--------SFTESPSVEDLTRFH-----------------------SKSPI-SHISKVK--TPTIFLLGAQDLRVP 719 (771)
Q Consensus 674 ~~~~--------~~~~~~~~~~~~~~~-----------------------~~sp~-~~~~~i~--~P~Lii~G~~D~~vp 719 (771)
.... .+......+....|. ...|+ ..+..++ +|+++|+|++|-+ .
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 1111 111111111101111 11222 3344555 9999999999964 4
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
...+.++...+. ...++++++|++||..... +...+.+.++.+++.
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvylD-np~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVYLD-NPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceeecC-CHHHHHHHHHHHHhc
Confidence 556666666653 3458999999999987644 445777888887765
No 110
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.53 E-value=4.7e-13 Score=141.33 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+...... ......++++...+..+++.- ..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG---~G~S~~p~~~-~~~~ys~~~~a~~l~~~i~~l--~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLG---FGFSDKPQPG-YGFNYTLDEYVSSLESLIDEL--KS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCccc-ccccCCHHHHHHHHHHHHHHh--CC
Confidence 35789999997755 4467777888864 89999999999 4444221100 011234555555555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh-----hhc-C-CC-CCcchh---hh----hc---cCC---
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVG-T-TD-IPDWCY---VE----SY---GSK--- 674 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~-----~~~-~-~~-~~~~~~---~~----~~---~~~--- 674 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|...... ... . .. ...+.. .. .+ ...
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 6799999999999999999999999999999998642100 000 0 00 000000 00 00 000
Q ss_pred --C----CCcCCCCCC-hhhHH-HHhhc--Cc------cc---cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004149 675 --G----KDSFTESPS-VEDLT-RFHSK--SP------IS---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 675 --~----~~~~~~~~~-~~~~~-~~~~~--sp------~~---~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. ...+..... ..... .+... .. .. ...++++|+|+++|+.|..++.+.++++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 0 000000000 00000 00000 00 00 01357899999999999999988777766642
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.++.++++++|.+.. +...++...|.+|++
T Consensus 352 ~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 352 QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 3688999999997764 556688888888885
No 111
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.53 E-value=3e-13 Score=136.22 Aligned_cols=206 Identities=17% Similarity=0.182 Sum_probs=119.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..| .+|.|+++|+||. |.+.... ....++..+.+..+++.. +.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G~---G~S~~~~------~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPGH---GGSAAIS------VDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCCC---CCCCCcc------ccCHHHHHHHHHHHHHHc--CCC
Confidence 3779999997765 34787888877 3799999999994 4432111 113444444444444432 357
Q ss_pred eEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCCccchhhh----hcCCCCCcch----------hhhh-ccCCCCCcCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWC----------YVES-YGSKGKDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p~~~~~~~----~~~~~~~~~~----------~~~~-~~~~~~~~~~ 680 (771)
++.++||||||.+++.++.++|+ +++++++.++....... ........|. .... +.......+.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccC
Confidence 89999999999999999999865 49998887754321100 0000000010 0000 0000000000
Q ss_pred CCC-----------ChhhHHHHhh-------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 681 ESP-----------SVEDLTRFHS-------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 681 ~~~-----------~~~~~~~~~~-------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
... .......+.. .+....+.++++|+++++|++|..+. .+.+. ...++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i 216 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVI 216 (242)
T ss_pred ccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEe
Confidence 000 0000001100 01123456889999999999998552 22222 14789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004149 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++||.+.. +...++.+.|..||++
T Consensus 217 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhh-hChHHHHHHHHHHHhh
Confidence 999997764 4556888889999864
No 112
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.52 E-value=5.2e-13 Score=136.04 Aligned_cols=215 Identities=17% Similarity=0.214 Sum_probs=123.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.++. ...|......|.++||.|+++|+||. |.+... + .....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~---G~s~~~--~--~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSA---GIDQSD--A--DSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCC---CCCCCC--c--ccCCCHHHHHHHHHHHHHhcC-C
Confidence 446899999997665 34688888899889999999999994 432110 1 111234444444443333311 2
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh---hhh-cCCCCCcchhh-hh----ccC-------CC---
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMV-GTTDIPDWCYV-ES----YGS-------KG--- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~---~~~-~~~~~~~~~~~-~~----~~~-------~~--- 675 (771)
.+++.|+||||||.++..++.++|++++++|+.++..... ... .....+.+... .. ++. ..
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 3689999999999999999999999999999987643210 000 00000000000 00 000 00
Q ss_pred ----CC-cCCCCCChhhHH---HHhhcCc---c------ccccCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 676 ----KD-SFTESPSVEDLT---RFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 676 ----~~-~~~~~~~~~~~~---~~~~~sp---~------~~~~~i-~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
.. .+...+. +... ......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .
T Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~ 240 (273)
T PLN02211 166 KEFRRKILYQMSPQ-EDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----S 240 (273)
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----c
Confidence 00 0111111 1001 1111011 1 112344 68999999999999999988888877643 3
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
+++.++ +||.... +...++...|.+..
T Consensus 241 ~~~~l~-~gH~p~l-s~P~~~~~~i~~~a 267 (273)
T PLN02211 241 QVYELE-SDHSPFF-STPFLLFGLLIKAA 267 (273)
T ss_pred EEEEEC-CCCCccc-cCHHHHHHHHHHHH
Confidence 677785 8997653 33335555555443
No 113
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.50 E-value=6.2e-14 Score=141.09 Aligned_cols=137 Identities=19% Similarity=0.211 Sum_probs=83.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----------------CCCcchHHHHHHHHCCcEEEEECCC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----------------SLSSYSKSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----------------~~~~~~~~~~~la~~G~~V~~~d~r 575 (771)
.+...++..+.++++.|++. .++.|+||++||-+... ....-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 34455678899999999853 67899999999833211 0001123567899999999999998
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC
Q 004149 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|-|+.+...... +-..+......|...+++||..++.+|++||+++|+||||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 854433211000 0011112224466779999999999999999999999999999999998 46
Q ss_pred ceeEEEecCCcc
Q 004149 640 KFVAAAARNPLC 651 (771)
Q Consensus 640 ~~~a~v~~~p~~ 651 (771)
++++.|+.+-++
T Consensus 249 RIka~v~~~~l~ 260 (390)
T PF12715_consen 249 RIKATVANGYLC 260 (390)
T ss_dssp T--EEEEES-B-
T ss_pred hhHhHhhhhhhh
Confidence 788887665554
No 114
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.49 E-value=2.5e-12 Score=131.06 Aligned_cols=243 Identities=18% Similarity=0.160 Sum_probs=151.0
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004149 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.||..+..-++.+... ......|+||++||-.+..........+..+.+.||.|+++|.||+++..-.. +.-+
T Consensus 101 ~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f 176 (409)
T KOG1838|consen 101 SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLF 176 (409)
T ss_pred CCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Ccee
Confidence 3455565556655432 12356799999999776654444455667778999999999999976542211 1122
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccch-hhhhcCCCCCcchh-
Q 004149 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNL-ALMVGTTDIPDWCY- 667 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~~-~~~~~~~~~~~~~~- 667 (771)
.....+|+.++++++.++. ...++..+|.||||.+.+.++++.. .+.+|+++.+|+--. ....-......+.+
T Consensus 177 ~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~ 254 (409)
T KOG1838|consen 177 TAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYN 254 (409)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHH
Confidence 2334789999999999985 2457999999999999999988643 355666666665321 00000000000000
Q ss_pred ---------------------------------hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCC
Q 004149 668 ---------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 668 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 714 (771)
...+.........+.+ ...+.|.+.|+..++++|++|+|+|+..+
T Consensus 255 ~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina~D 332 (409)
T KOG1838|consen 255 RALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINAAD 332 (409)
T ss_pred HHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEecCC
Confidence 0000000111111222 23456778899999999999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC---ChHHHHHH-HHHHHHHH
Q 004149 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 769 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~wl~~~ 769 (771)
|+++|.+ +.-.-+. ..+..+-+++-.-+||--.... ....++.+ +.+||.+.
T Consensus 333 DPv~p~~-~ip~~~~--~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 333 DPVVPEE-AIPIDDI--KSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCCcc-cCCHHHH--hcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 9999875 2333222 2345677888888899533221 44456666 78888754
No 115
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.47 E-value=3.3e-13 Score=130.95 Aligned_cols=174 Identities=20% Similarity=0.264 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc---CC--CCCcchhh-hh
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---TT--DIPDWCYV-ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~---~~--~~~~~~~~-~~ 670 (771)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-...... .. .++..... ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 7999999888543221100 00 01110000 00
Q ss_pred ccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004149 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H 747 (771)
........+...........-......-.+.++++|+|++.|++|.+.|.. .+..+.++|++++.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 000000000000000000000111122346788999999999999999864 455677788888765 78999999999
Q ss_pred cCCCC---------------------------CChHHHHHHHHHHHHHHhC
Q 004149 748 GIERP---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~---------------------------~~~~~~~~~i~~wl~~~l~ 771 (771)
.+.-+ ....+.|.++++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76421 1356789999999999985
No 116
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.47 E-value=8.8e-13 Score=120.91 Aligned_cols=199 Identities=22% Similarity=0.365 Sum_probs=136.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-C---CCCCChhhhhcC-CCCcccc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGEEALQSL-PGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~r-G---~~~~g~~~~~~~-~~~~~~~ 595 (771)
+.+++.... ..+ .+||.+.--.+.. .+.-...+..++..||.|++||+- | +.+-..+.+... .+.-...
T Consensus 28 ldaYv~gs~----~~~-~~li~i~DvfG~~-~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST----SSK-KVLIVIQDVFGFQ-FPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC----CCC-eEEEEEEeeeccc-cHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 566665432 122 4555554321111 223455678889999999999974 5 111111111111 1112233
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
...++.+.++||+.++ +..+|+++|++|||-.+..+....| .|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999775 6789999999999999988888766 6888887666320
Q ss_pred CCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccCCC---
Q 004149 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER--- 751 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~--- 751 (771)
. ...+..+++|+|++.++.|..+|+....++.+.+++... ..++.+|++.+|++..
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~ 215 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRA 215 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhcc
Confidence 0 123456789999999999999999999999998887532 3578999999999873
Q ss_pred ----C---CChHHHHHHHHHHHHHHhC
Q 004149 752 ----P---QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ----~---~~~~~~~~~i~~wl~~~l~ 771 (771)
| ...++.++.++.||++|++
T Consensus 216 ~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 2 2245778999999999984
No 117
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.47 E-value=5.8e-13 Score=137.40 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=135.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-CcEEEEECCCCCCCCCh-hhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGE-EALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~V~~~d~rG~~~~g~-~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..|.||++||...+ ...|...+..|.+. |+.|+++|..| +|. +... .-......+....+..+....
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G---~g~~s~~~----~~~~y~~~~~v~~i~~~~~~~- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPG---HGYSSPLP----RGPLYTLRELVELIRRFVKEV- 125 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCC---CCcCCCCC----CCCceehhHHHHHHHHHHHhh-
Confidence 467889999996654 55787777777554 69999999999 332 1111 111145666666666555443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEE---ecCCccchhhhh--------c----CCC--------CCcchhhh
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVE 669 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~ 669 (771)
..+++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+...+.+
T Consensus 126 -~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 204 (326)
T KOG1454|consen 126 -FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSE 204 (326)
T ss_pred -cCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeH
Confidence 23559999999999999999999999999999 554433211000 0 000 00000000
Q ss_pred hccCCCCCcCCC-CCChhhH--------------H---HH----h--hcCccccccCCC-CcEEEEeeCCCCccCcHHHH
Q 004149 670 SYGSKGKDSFTE-SPSVEDL--------------T---RF----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~~~~~~~~~-~~~~~~~--------------~---~~----~--~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~ 724 (771)
.........+.. ....+.. . .+ . .......+.++. +|+||++|+.|+++|.+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 205 GLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHH
Confidence 000000000000 0000000 0 00 0 123334566776 99999999999999999777
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+.+.+ .++++++++++||.... +..+++...|..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 776665 35899999999997765 667789999999998764
No 118
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.44 E-value=1.4e-12 Score=138.07 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=113.5
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHH
Q 004149 555 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 630 (771)
Q Consensus 555 ~~~~~~---~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a 630 (771)
|..++. .|...+|.|+++|+||. |.+. ... ...++..+.+..+++.- +.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~---g~s~----~~~---~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGA---DGSL----DVP---IDTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCC---CCCC----CCC---CCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444554 45445799999999984 4331 111 12334444444444432 3344 5799999999999
Q ss_pred HHHHHhCCCceeEEEecCCccchhh----hhc-------CC-C--CC-c------chhhhhccC-C-CCCcCCCCC----
Q 004149 631 THLIGQAPDKFVAAAARNPLCNLAL----MVG-------TT-D--IP-D------WCYVESYGS-K-GKDSFTESP---- 683 (771)
Q Consensus 631 ~~~a~~~p~~~~a~v~~~p~~~~~~----~~~-------~~-~--~~-~------~~~~~~~~~-~-~~~~~~~~~---- 683 (771)
+.++.++|++++++|+.++...... ... .. . .. . +.....+.. . ....+....
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999987542110 000 00 0 00 0 000000000 0 000000000
Q ss_pred -----Chhh-H-----HHHhhcCc-------------cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004149 684 -----SVED-L-----TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 684 -----~~~~-~-----~~~~~~sp-------------~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
.... . ......++ ...+.++++|+|+++|++|..+|++.+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 0000 0 00000000 113567899999999999999999888887776632 3688
Q ss_pred EEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004149 740 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++ +||..... ...++...+.+||++
T Consensus 310 ~~i~~~aGH~~~lE-~Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLK-ETDRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhc-CHHHHHHHHHHHHHh
Confidence 99985 99987754 455888899999975
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.43 E-value=1.5e-10 Score=120.45 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=141.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+|+|||+.++...... ..++.++ ..++..+.+...... ..+.|+|||+.|+....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~------- 92 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANE------- 92 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcC-------
Confidence 45689999999875543321 2344444 334333322222222 47889999997765422
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|++||+.+++.... .+....+..+.|+|||+. ++
T Consensus 93 ------------------------------------~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 93 ------------------------------------DDNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred ------------------------------------CCCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 125799999988765433 233334567899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+.. ...++.+|. .+++...............|+|||++|++.....
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65421 113555676 4444322111222345689999999887664332
Q ss_pred CCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 340 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++... +.... ....++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI-----------PGVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc-----------cccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358899988765311 11000 000000 00123567999999876654333 357777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|+.++++..............|+++|+.|+..... -..|.+.++.++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCC
Confidence 98888876543322334456889999987755321 224777776554
No 120
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.39 E-value=6.6e-12 Score=132.97 Aligned_cols=243 Identities=12% Similarity=0.088 Sum_probs=141.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------CCcchH-HH---HHHHHCCcEEEEECCCCCCC-----C
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----------LSSYSK-SL---AFLSSVGYSLLIVNYRGSLG-----F 580 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----------~~~~~~-~~---~~la~~G~~V~~~d~rG~~~-----~ 580 (771)
+|.+..|-.. ...+.++||++|+..++.- ...|.. .+ ..+--..|.||++|..|++. +
T Consensus 42 ~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~ 118 (389)
T PRK06765 42 QMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNV 118 (389)
T ss_pred eEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCC
Confidence 4444444433 3345699999998443210 012221 11 12333459999999998642 1
Q ss_pred Ch---hhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 581 GE---EALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 581 g~---~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
|. ...+...+ ......++|+.+++..+++.. +-+++. ++||||||++++.++.++|++++.+|+++...
T Consensus 119 g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~~ 196 (389)
T PRK06765 119 ITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGNP 196 (389)
T ss_pred CCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecCC
Confidence 11 11111111 233356888888887777763 346775 99999999999999999999999999886532
Q ss_pred chhhh------h----cCCCCCcch---h---------------------------hhhccCCCCCcCC---CCCChhhH
Q 004149 652 NLALM------V----GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVEDL 688 (771)
Q Consensus 652 ~~~~~------~----~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~~ 688 (771)
..... . .....+.|. | ...+......... ........
T Consensus 197 ~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~~ 276 (389)
T PRK06765 197 QNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTSF 276 (389)
T ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhhH
Confidence 11000 0 000011110 0 0001100000000 00000000
Q ss_pred HHHh------------------------hc-------CccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004149 689 TRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 689 ~~~~------------------------~~-------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.+...+.++
T Consensus 277 e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a 356 (389)
T PRK06765 277 EKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYA 356 (389)
T ss_pred HHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCe
Confidence 1110 00 2233466889999999999999999999999999998766678
Q ss_pred EEEEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004149 738 KVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 738 ~~~~~~~-~~H~~~~~~~~~~~~~~i~~wl~~ 768 (771)
+++++++ .||.... +...++...|.+||++
T Consensus 357 ~l~~I~s~~GH~~~l-e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 357 EVYEIESINGHMAGV-FDIHLFEKKIYEFLNR 387 (389)
T ss_pred EEEEECCCCCcchhh-cCHHHHHHHHHHHHcc
Confidence 9999985 8998664 3445788888999875
No 121
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=4.9e-12 Score=123.46 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=83.4
Q ss_pred cCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 212 YAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
+.+....++|+|+....+ +.+. +....-+.++.||||++. |+-.+. +. .|-+++-.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSF-------------Dk--SVkLW~g~- 397 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASF-------------DK--SVKLWDGR- 397 (480)
T ss_pred EEecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeec-------------cc--ceeeeeCC-
Confidence 345567899999864332 3455 445556889999999998 887772 22 44445530
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004149 290 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+.-...+..+-..+...+||.|.+-|+-.+.+ ..|.+|++.+.+..+-..+..
T Consensus 398 ---------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 398 ---------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ---------------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC
Confidence 333455566677788999999999977766654 358889988876543222211
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
..+..+.|||||.++.
T Consensus 452 -------------------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 452 -------------------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------ceEEEEEecCCCceee
Confidence 1245678999999663
No 122
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.38 E-value=8.4e-12 Score=154.99 Aligned_cols=224 Identities=17% Similarity=0.233 Sum_probs=132.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-C--CccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|+||++||.+.+ ...|...+..|.+ +|.|+++|+||. |.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G~---G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPGH---GGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCCC---CCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 45789999997765 3467777777754 699999999994 443211100 0 01122355555555555444
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh--h--hcCCCCCcc----------hhhhhccCCC-CC
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--M--VGTTDIPDW----------CYVESYGSKG-KD 677 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~--~--~~~~~~~~~----------~~~~~~~~~~-~~ 677 (771)
.+.+++.|+||||||.+++.++.++|++++++|+.++...... . ........+ .+...+.... ..
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1521 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWK 1521 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhh
Confidence 2457899999999999999999999999999998875422110 0 000000000 0000000000 00
Q ss_pred cCCCCC-------------ChhhHH-HHhh------cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---
Q 004149 678 SFTESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--- 734 (771)
Q Consensus 678 ~~~~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--- 734 (771)
.....+ ...... .+.. .+....+.++++|+|+++|++|..++ ..+.++.+.+.+..
T Consensus 1522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred hhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 000000 000000 0000 11123477889999999999999875 66677777665421
Q ss_pred -----CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 735 -----VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 -----~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+++++++++||.... ++...+.+.+.+||++.
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhc
Confidence 12689999999998764 44557889999999863
No 123
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.36 E-value=3.6e-11 Score=115.66 Aligned_cols=130 Identities=22% Similarity=0.201 Sum_probs=92.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC---
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--- 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--- 590 (771)
...|...++++|.|++.+ .+.|+||++||+.++.... ....+-....+.||.|+.||- +...|......
T Consensus 41 ~~~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~ 113 (312)
T COG3509 41 DVNGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWF 113 (312)
T ss_pred ccCCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccC
Confidence 446778899999998753 3349999999976653211 111122333568999999952 22223111111
Q ss_pred -----CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 591 -----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 -----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
..+..++..+.+.+..|+.+..+|+.||++.|.|.||.|+..++..+|++|.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 2233457778888999999988999999999999999999999999999999988777654
No 124
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.31 E-value=1.8e-12 Score=115.92 Aligned_cols=208 Identities=16% Similarity=0.186 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccc--cchhhHHHHHHHHHHcCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d 614 (771)
-.|+++.|.-++. ...|......+ ...-+.|++.|.|| ||.+-. +..... ...+|...+++-+... +
T Consensus 43 ~~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 43 NYILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred ceeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHHh---C
Confidence 3577778854442 45666655443 33449999999999 766532 111111 1246777777766553 5
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-----hhhhcCCCCCcchh------hhhccCCCCCcCCCCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWCY------VESYGSKGKDSFTESP 683 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 683 (771)
.+++.|+|+|-||..|+.+|+++++.+...|+.....-. ..+-+..+...|.. ...|+.+ .
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e--------~ 184 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPE--------T 184 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHH--------H
Confidence 689999999999999999999999988777766553321 12222333333321 1111110 0
Q ss_pred ChhhHHHHh--------hc--C-ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 684 SVEDLTRFH--------SK--S-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 684 ~~~~~~~~~--------~~--s-p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....++.+- .. + --..+.+++||+||+||+.|++++-.+.--+...+.- .++.++|+++|++...
T Consensus 185 f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLr 260 (277)
T KOG2984|consen 185 FRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLR 260 (277)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeee
Confidence 001111111 00 0 1134788999999999999999987765544443332 6899999999998754
Q ss_pred CChHHHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~ 768 (771)
- ..++...+.+||+.
T Consensus 261 y-a~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 261 Y-AKEFNKLVLDFLKS 275 (277)
T ss_pred c-hHHHHHHHHHHHhc
Confidence 4 34788899999975
No 125
>PRK05855 short chain dehydrogenase; Validated
Probab=99.31 E-value=2.3e-11 Score=139.64 Aligned_cols=232 Identities=10% Similarity=0.108 Sum_probs=121.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++..+-+ ...|+||++||.+.. ...|...+..| ..||.|+++|+||. |.+.... .....
T Consensus 10 ~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G~---G~S~~~~---~~~~~ 74 (582)
T PRK05855 10 SDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRGA---GRSSAPK---RTAAY 74 (582)
T ss_pred eCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCCC---CCCCCCC---ccccc
Confidence 4677787665532 235889999997654 44677777777 67899999999994 4432111 11112
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecC-CccchhhhhcCCCC----------
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI---------- 662 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~-p~~~~~~~~~~~~~---------- 662 (771)
..+++.+.+..+++.-.. ..++.|+||||||.+++.++.+. +..+..++..+ |..+..........
T Consensus 75 ~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (582)
T PRK05855 75 TLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLAR 153 (582)
T ss_pred CHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhhH
Confidence 233444333333333111 23499999999999998777652 23333333322 21111000000000
Q ss_pred ------Ccchh-------------hhhccC---CCCCcCCCCCCh------------hhHHHHh----hcCccccccCCC
Q 004149 663 ------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKVK 704 (771)
Q Consensus 663 ------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i~ 704 (771)
..+.. ...... ............ .....+. ..........++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (582)
T PRK05855 154 ALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYTD 233 (582)
T ss_pred HHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCcc
Confidence 00000 000000 000000000000 0000000 000111234578
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+|+|+++|++|.++|+.....+.+.+. ..++++++ +||.... +....+...+.+|+++.
T Consensus 234 ~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 234 VPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPM-SHPQVLAAAVAEFVDAV 292 (582)
T ss_pred CceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchh-hChhHHHHHHHHHHHhc
Confidence 999999999999999888777665443 35666665 6898764 34457788898998753
No 126
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.31 E-value=1.1e-10 Score=118.40 Aligned_cols=309 Identities=16% Similarity=0.132 Sum_probs=149.5
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+..++||+++.|..+. + ...+++++++ ..++.+|||..+- .......+||+.+.++|+.+. ..+
T Consensus 41 ~~ft~dG~kllF~s~~-d-----g~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~----~~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF-D-----GNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNG----RSL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T-T-----SS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETT----TEE
T ss_pred CCcCCCCCEEEEEecc-C-----CCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECC----CeE
Confidence 3347899999997663 2 5678899776 4458899998751 123347889999999998753 368
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceee--cCCCCeEEEEecCCCCCC--CCcc---------------CCCC
Q 004149 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSK--PTFS---------------LGST 186 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~--~~~~---------------~~~~ 186 (771)
+.++ .+.+.+.+..++.... +.-.| ..|+++++.+........ ..|. ....
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~---------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWK---------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTT--EEEEEE--TTEE---------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCcCcEEEEEECCcccc---------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 8888 5666666666665432 33455 567998887654332211 1110 0011
Q ss_pred CCCC--CCccCCCCCCcccccCCcCcccC-------CccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 187 KGGS--SDKDCNSWKGQGDWEEDWGETYA-------GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~d~g~~~~-------~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.++. .......|.+...|+|.-..++. ..-...||+++.+++..+.+.........+.-.|+|||+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~---- 251 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST---- 251 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-----
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE----
Confidence 1111 12234556665555553322211 1123589999999999888843333446778899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|.|.+...+. ....|+.+|+ .+++.+.+..-+ ......-|+||+.+|=-..+
T Consensus 252 i~y~~~~~~~----------~~~~i~~~d~-----------------~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 252 IWYDSYTPGG----------QDFWIAGYDP-----------------DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEETTT------------EEEEEE-T-----------------TT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEeecCCC----------CceEEEeeCC-----------------CCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 9998742221 1125777777 666666554333 24466778999965533322
Q ss_pred CCCCC----CCc-cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 338 SSVDS----GAH-SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 338 ~~~~~----g~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
..+.. |.. ....-||++++..+....+.... ....+.. |......+.+.|||||+.|+|.++..|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~-~sw~v~~--------~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD-TSWKVLD--------GDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEEE--------BT--------TBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred CCccccccccceecCCcEEEEeccccCceeeeeecc-Ccceeec--------CCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 11100 000 01124667777665543221110 0000010 0001124688999999999999999999
Q ss_pred eEEEEEECC
Q 004149 413 QVIISVNVS 421 (771)
Q Consensus 413 ~~l~~~d~~ 421 (771)
..||.+++.
T Consensus 375 ~~vY~v~i~ 383 (386)
T PF14583_consen 375 PAVYLVEIP 383 (386)
T ss_dssp -EEEEEE--
T ss_pred ccEEEEeCc
Confidence 999999874
No 127
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.30 E-value=1.4e-10 Score=123.48 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=122.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
|.+...++|.|+++. .+++|+|+++||..+... ......+..|.+.| .+|+++|......... ....
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~-~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~----el~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAES-MPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ----ELPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhc-CCHHHHHHHHHHcCCCCceEEEEECCCCcccccc----cCCc---
Confidence 566888999998775 568999999999765432 12334556666677 4578887532111100 0111
Q ss_pred ccchh-hH-HHHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 594 SQDVN-DV-LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 594 ~~~~~-D~-~~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
...+. .+ .+.+.++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+...
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------- 328 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------- 328 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc-------------
Confidence 01111 11 133345555433 47889999999999999999999999999999999986421100
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ......+.+... ........++|-+|+.|..+ ....+++++.|+++|.++++.++++ ||..
T Consensus 329 -~~~---------~~~~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 329 -GGQ---------QEGVLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred -cCC---------chhHHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 000 000001111110 01112346888899998654 4677899999999999999999987 6964
No 128
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=3.7e-10 Score=113.51 Aligned_cols=294 Identities=14% Similarity=0.104 Sum_probs=173.0
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004149 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
+|.+++++++. +.++.+ ..++...|+-.. +++.-..++-|++.++...+.+ + .+-+.+
T Consensus 331 ~Gd~ia~VSRG----------kaFi~~--~~~~~~iqv~~~------~~VrY~r~~~~~e~~vigt~dg-D--~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSRG----------KAFIMR--PWDGYSIQVGKK------GGVRYRRIQVDPEGDVIGTNDG-D--KLGIYDK 389 (668)
T ss_pred CCcEEEEEecC----------cEEEEC--CCCCeeEEcCCC------CceEEEEEccCCcceEEeccCC-c--eEEEEec
Confidence 78888887643 233321 223334444322 4577778888888665433322 2 233344
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004149 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++..--..+ ..+..|||||+++...
T Consensus 390 ~~~e~kr~e~~lg~I----------~av~vs~dGK~~vvaN--------------------------------------- 420 (668)
T COG4946 390 DGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVAN--------------------------------------- 420 (668)
T ss_pred CCceEEEeeCCccce----------EEEEEcCCCcEEEEEc---------------------------------------
Confidence 344444443222222 5889999999887742
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004149 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
.+.+||++|+++|+++.+. -....-+..+.|||++++ |+|.-- .|+ -..+|.++|+
T Consensus 421 -----dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~----iAYafP------~gy-----~tq~Iklydm--- 476 (668)
T COG4946 421 -----DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW----IAYAFP------EGY-----YTQSIKLYDM--- 476 (668)
T ss_pred -----CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee----EEEecC------cce-----eeeeEEEEec---
Confidence 3479999999999999984 334456889999999999 999742 222 1237888887
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc----------ccceeeecCCCC
Q 004149 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT----------DSLHRIDWPTNG 360 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~----------~~l~~~d~~~~~ 360 (771)
.+++.-.+|.......+|+|.|||++|+|++.+.- .+.... ..=|++-+..|-
T Consensus 477 --------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsL---dPs~Drv~fnf~f~~vskPylv~L~~g~ 539 (668)
T COG4946 477 --------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSL---DPSNDRVIFNFSFQRVSKPYLVVLGRGY 539 (668)
T ss_pred --------------CCCeEEEecCCcccccCcccCCCCcEEEEEecccc---CCCCCeeEEEEEEeeeccceEEEecCCC
Confidence 78899999999999999999999999999998752 111111 111233332221
Q ss_pred CCC---C----ccceeeEEeccccc-CCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEECC
Q 004149 361 NFS---S----LEKIVDVIPVVQCA-EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVS 421 (771)
Q Consensus 361 ~~~---~----~~~~~~~~~~~~~~-~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~-----------~~~l~~~d~~ 421 (771)
..+ . +.... -+++-... ....||-. .....++.-..+|+.++|+..-++ ...|..+|++
T Consensus 540 ~sP~~q~p~~~~~ea~-e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydle 617 (668)
T COG4946 540 YSPFNQPPDEANSEAG-EVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLE 617 (668)
T ss_pred CChhhcCchhcCcccc-ceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecc
Confidence 110 0 00000 00000000 01112200 001123445678888888775332 3357777888
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+.+.+.+..+. +...+|+|++.+++... -.|++++.+
T Consensus 618 tkk~~e~k~nv---ss~rlS~D~s~ilvk~d-----~kl~~f~ve 654 (668)
T COG4946 618 TKKVEEYKDNV---SSFRLSSDGSKILVKLD-----GKLRLFDVE 654 (668)
T ss_pred hhhHHHHhccc---ceEEEcCCCCEEEEEeC-----CeEEEEecc
Confidence 87777766543 34568999999887332 347777754
No 129
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.29 E-value=3.3e-09 Score=108.23 Aligned_cols=268 Identities=17% Similarity=0.214 Sum_probs=149.3
Q ss_pred HHHHhhcCccccceEE-EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC
Q 004149 30 LLQDFTNISSIDKAWT-FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 108 (771)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 108 (771)
+-+-+..+|+...+.- .=...|-|..|.|.. .+.+++..++... ...++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~~-~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNPA-SVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCcc-ceeeecccc-----ceeEEEEeCC
Confidence 3445666777665421 112356888999963 2355555553332 233444443 3466788999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC--CCccC--
Q 004149 109 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSL-- 183 (771)
Q Consensus 109 dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~-- 183 (771)
.|-++|-- +...-..+|+..+...++... .-..|.| ..++|++|+++|+-+.+.+..-. ..|+.
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 99988742 222356777433333333211 1223333 78999999999998876553210 11110
Q ss_pred ---------------CCCC------------------CCCC------CccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 184 ---------------GSTK------------------GGSS------DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 184 ---------------~~~~------------------~~~~------~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
...+ .+++ ...+..+...++|+||+..-.+...+..++++|
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 0000 1112 223445556778999943334445578999999
Q ss_pred ccCCceeec-c-CCCCCCccceEEEecCCCCCccEEEEEeecCc-------c---------------eeeeeeeeccCCc
Q 004149 225 INSGEVQAV-K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-------T---------------RKLGIKYCYNRPC 280 (771)
Q Consensus 225 ~~~~~~~~l-~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~-------~---------------~~~g~~~~~~~~~ 280 (771)
-.+|+..-. . ..+...++..++||||+++ ++.++-... . ..+|..+ ...
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW---qkd 291 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW---QKD 291 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE---eCC
Confidence 888875443 2 1234557889999999999 988763222 1 1122222 233
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|..+.+++. ++.-... +......+..+...+.....||||++|+-.+.+.
T Consensus 292 ~lItVSl~G~------in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 292 HLITVSLSGT------INYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred eEEEEEcCcE------EEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 4555544210 0000000 1123455566677889999999999998777664
No 130
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.29 E-value=6.3e-11 Score=128.87 Aligned_cols=216 Identities=18% Similarity=0.234 Sum_probs=126.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++.+.|.|.. .....+.||++||.....+... -...+.+|+++||.|+++|+||.+..... ........
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~------~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQAD------KTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCccccc------CChhhhHH
Confidence 5667777763 2224566889999543322211 23578899999999999999984432111 11222334
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHH----HHHHhC-CCceeEEEecCCccchhhhh---------------
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMV--------------- 657 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~----~~a~~~-p~~~~a~v~~~p~~~~~~~~--------------- 657 (771)
+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+..+|+...-
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e 323 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIE 323 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHH
Confidence 5688888888865 3568899999999999863 234454 77899988887766642110
Q ss_pred ----cCCCCCc----------------ch-hhhhc--cCCCCCc-----C---CCCCC---hhhHHHHhhcCcc------
Q 004149 658 ----GTTDIPD----------------WC-YVESY--GSKGKDS-----F---TESPS---VEDLTRFHSKSPI------ 697 (771)
Q Consensus 658 ----~~~~~~~----------------~~-~~~~~--~~~~~~~-----~---~~~~~---~~~~~~~~~~sp~------ 697 (771)
....++. |. +...+ +.....+ . ...|. .+....++..+.+
T Consensus 324 ~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~ 403 (532)
T TIGR01838 324 RQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLE 403 (532)
T ss_pred HHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeE
Confidence 0000000 00 00000 0000000 0 00000 0011111222222
Q ss_pred -----ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 698 -----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 698 -----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..+.+|++|+|+++|++|.++|++.+..+.+.+.. .+..+++++||...
T Consensus 404 v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 404 VCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred ECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 34678899999999999999999988887766542 45668899999643
No 131
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.29 E-value=7.8e-11 Score=125.50 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc-chHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~-~~~~~---~~la~~G~~V~~~d~rG~~~~g~~~~~~~~ 589 (771)
.||.+|...+|+|+ ..++.|+++..+-.|..... .. ..... ..++.+||+|+..|.||++++...+-
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~---- 99 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFD---- 99 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccc----
Confidence 47899999999998 56889999998844443321 11 11112 36899999999999999877655432
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~ 653 (771)
.....+.+|-.+.|+||.++++.+ .+|+++|.|++|+..+++|+..|.-.++++..++..|.
T Consensus 100 -~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 100 -PESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred -eeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 122247899999999999998765 78999999999999999999999899999988887764
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=1.5e-09 Score=113.04 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=117.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....|+|||+.++.....+ + .+..++ ..++........... .++.|+|||+.|++.+...
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~-~--~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDD-N--LVTVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-C--eEEEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-----
Confidence 45678999999875543222 2 344333 222222222211122 4789999999988864321
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..++.+|..+++.... .........+.|+|||+. |+
T Consensus 137 --------------------------------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~ 172 (300)
T TIGR03866 137 --------------------------------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LW 172 (300)
T ss_pred --------------------------------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EE
Confidence 3456678777665433 222234567899999997 76
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFL 331 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l 331 (771)
+.+. ....|+++|+ .+++. ..++.. ........|||||+.+
T Consensus 173 ~~~~--------------~~~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 173 VSSE--------------IGGTVSVIDV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEcC--------------CCCEEEEEEc-----------------CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6541 2236888887 44432 333211 1123457899999986
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~ 411 (771)
+..... ...|.++|+.+++.... ... . ..+..++|+|||+.|+.+....
T Consensus 222 ~~~~~~----------~~~i~v~d~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~l~~~~~~~- 270 (300)
T TIGR03866 222 FVALGP----------ANRVAVVDAKTYEVLDY----------LLV---G-------QRVWQLAFTPDEKYLLTTNGVS- 270 (300)
T ss_pred EEEcCC----------CCeEEEEECCCCcEEEE----------EEe---C-------CCcceEEECCCCCEEEEEcCCC-
Confidence 554322 23588999876543211 000 0 1234678999999876554333
Q ss_pred eeEEEEEECCCCcE-EEec
Q 004149 412 SQVIISVNVSSGEL-LRIT 429 (771)
Q Consensus 412 ~~~l~~~d~~tg~~-~~l~ 429 (771)
..|..+|+.+++. .++.
T Consensus 271 -~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 271 -NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred -CeEEEEECCCCcEEEEEE
Confidence 3577778888885 4443
No 133
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.26 E-value=1.7e-10 Score=111.86 Aligned_cols=177 Identities=19% Similarity=0.183 Sum_probs=119.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|. ..+.+|+|||+||..-. ...|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~~~--~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFLLI--NSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcCCC--HHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 56789999999996522 3347788999999999999999654221 122235788888
Q ss_pred HHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004149 603 AIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 603 ~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.++|+.+.. ..|-+|++|+|||.||-++..++..+ +.++++++++.|+-.+.......
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~--------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTE--------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCC---------
Confidence 899987631 15888999999999999999988876 45899999999986322110000
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCC---------ccCc-HHHHHHHHHHHhCCCCEEE
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 739 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 739 (771)
|. .....| ..-+...|+|++-.+-.. ..|. .+-.+||++++ .+.-.
T Consensus 141 -------------P~------v~~~~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP------VLTYTP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc------cccCcc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 000001 011234899998766653 2232 23456777764 35777
Q ss_pred EEeCCCCcc
Q 004149 740 IVFPNDVHG 748 (771)
Q Consensus 740 ~~~~~~~H~ 748 (771)
++..+.||+
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788899996
No 134
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.26 E-value=3.2e-11 Score=108.38 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=131.0
Q ss_pred CCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
...|++||+|||.+...... -...+..+.++||+|..++|--++. .......+.++...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 45699999999987654332 2234566779999999999876432 2234456889999999998864 3
Q ss_pred CCCeEEEEEcChhHHHHHHHHHh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.+-|||.|+.+++.+.++ +..++.++++.++++++..+..+....+..+. + +...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlgLt-----------------~--~~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLGLT-----------------E--RNAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccCcc-----------------c--chhh
Confidence 45678999999999999988875 45589999999999988776554432211100 0 1111
Q ss_pred hcCc-cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 693 SKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 693 ~~sp-~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..|+ +...+.++.|+|++.|++|.---++|.+.|..++++ .++..|++.+|.
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 2222 234677889999999999987778999999999987 678899999995
No 135
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.25 E-value=4.4e-10 Score=104.00 Aligned_cols=250 Identities=15% Similarity=0.151 Sum_probs=158.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC-CcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....++||++.||..... .-.+|.+..+ ..+...+... ..+ ..+.|--||++++..+++.+.
T Consensus 41 sqVNrLeiTpdk~~LAaa~~q---hvRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQ---HVRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCC---eeEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 568889999999999875432 2345555532 2344444443 344 588999999999998888765
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC-CCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK-SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~-~~~~~~~~wspDg~~~ 254 (771)
+ .|+.-.... ...-...+....++..|+-+|++++.....|++||+..... ..+ +|+ +..+.+++..|||+.
T Consensus 108 k--IWdlR~~~~-qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 K--IWDLRSLSC-QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred E--EEeccCccc-chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5 454332222 22223446667778888889999999999999999987743 334 444 457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
++-+. ..+..|++++-.. +..+.=....++..+.+.+....+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~----------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNH----------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCC----------CccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 77654 3346777776210 0000001123344567788899999999999998
Q ss_pred ecCCCCCCCCccccccceeeecCCC-CC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTN-GN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~-~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
+.+. .+++|+.++- .. +.++... .-.-...||.||++|+ +.+.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Ylv-Tassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYLV-TASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEEE-ecCCCCc
Confidence 8775 3566665442 00 1111110 0123557899999774 5555677
Q ss_pred eEEEEEECCCCcEEEec
Q 004149 413 QVIISVNVSSGELLRIT 429 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~ 429 (771)
.+|| ++..++..+..
T Consensus 282 ~rlW--~~~~~k~v~qy 296 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQY 296 (311)
T ss_pred eeec--ccccCceeeec
Confidence 7787 45566655443
No 136
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.25 E-value=2.4e-09 Score=113.08 Aligned_cols=269 Identities=15% Similarity=0.222 Sum_probs=145.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+++++. .|+..... .....+..+.+..+.+....+...+ ......-..+++|||++|+ +.+..++.-.++.+
T Consensus 45 ~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~-vany~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLY-VANYGGGSVSVFPL 116 (345)
T ss_dssp -TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEE-EEETTTTEEEEEEE
T ss_pred EeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEE-EEEccCCeEEEEEc
Confidence 456654 44444321 1345666666655533333332221 1113346788999999985 55554465566777
Q ss_pred ecCCcceEEEecC-Cccccccc---CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 130 WSQSQLEKEFHVP-QTVHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~~~~~~~~~~~~-~~~~g~~~---~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
...|......... ..-.|..- ......++.|+|||++|+.. +.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 6556555443210 00000000 00011378999999987543 32
Q ss_pred CCcCcccCCccCceEEEEEccCCc--eeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 206 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
+...|++++++... +.... ..+....+.+++|+|||+ .+|+.++. ...
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~-----~~Yv~~e~-------------s~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK-----YAYVVNEL-------------SNT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS-----EEEEEETT-------------TTE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC-----EEEEecCC-------------CCc
Confidence 23567777776544 43310 145566788999999999 45555332 235
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCccee---cC---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVN---LT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
|..++++. ..+..+. +. . ........++||||++| |.+++. ...|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 1222211 11 1 11145678999999976 566663 34577
Q ss_pred eeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 353 RIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 353 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+++++ ++..+. +..+.. .+.+ +..+.++|||++|+++....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~~--------~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLTL--------VQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEEE--------EEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEE--------EEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 77763 333221 111111 1222 346788999999988777778889999999999988765
No 137
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=4.2e-10 Score=111.18 Aligned_cols=276 Identities=12% Similarity=0.065 Sum_probs=162.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+||++|++||-.+.. .+.-+|.+..++..+-...+ .+.+..| ..+.||||.++|+--..+.. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~~kl~~tl-vgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVHFKLKKTL-VGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcceeeeeee-ecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 568999999999999976543 34456766655552222222 1111112 58899999999876543332 2
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..|+...+......... ........|.||.-..++|..+.+++.||+++.....-.+.. .-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 23443333322222222 122235679999877778888899999999987643332111 124678899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++.+. .+.+|..++. ++...+.+-.....+.+...|.||+.+...-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 88776 2337888886 55555556666667889999999996544332
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
+..|++||++.....+.-.+... ..| +-.-||.--...++.+.+.++ ++|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEecCCCc--eEEE
Confidence 24589999884332221111100 000 112345433334666665554 4666
Q ss_pred EECCCCcEEEecCCCC-CceeeEEeecCCEEEEEEe
Q 004149 418 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s 452 (771)
++..+|++.....+.. .+...++.|....++++++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 7888888765544432 4444555565555544443
No 138
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.23 E-value=6.7e-10 Score=104.13 Aligned_cols=178 Identities=17% Similarity=0.180 Sum_probs=105.7
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004149 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~--~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+++||...+..+.......+++++.+. .+..++++- ..++..+.++.+++.. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 7999997665444445556667777664 455555543 1345555555555553 3445
Q ss_pred EEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc----CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhh
Q 004149 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
+.|+|.|+||+.|.+++.+++ +++ |+++|.+....... ......| .+.+. ..........
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~----------~e~~~--~~~~~~~~l~- 124 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYT----------GESYE--LTEEHIEELK- 124 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCC----------Cccce--echHhhhhcc-
Confidence 999999999999999998874 444 88899876543221 1110000 00000 0011111111
Q ss_pred cCccccc-cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 694 KSPISHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 694 ~sp~~~~-~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
.+... ..-..++++++++.|++++...+...++. +..++.+|++|.+.. -.+.+..|.+|+
T Consensus 125 --~l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 125 --ALEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred --eEeccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 11111 12246899999999999998666554432 344566788999874 346678888886
No 139
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.22 E-value=1e-11 Score=125.62 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=119.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhh------
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ------ 586 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~------ 586 (771)
|.++..++|.|+++...+++|+|+++||. .+.. .......+..+.+.| ..+++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56688899999988788999999999994 1110 001112333344443 45666665443211111110
Q ss_pred cCCCCccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hhhcCCCCC
Q 004149 587 SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 663 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~~~~~~ 663 (771)
......+...+.+.+ +.+.++.++..+.+++.+|+|+||||+.|++++.++|+.|.++++.+|.++.. .+....+.
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~- 162 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDD- 162 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTC-
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCc-
Confidence 001111111223322 55667777766666669999999999999999999999999999999987653 11110000
Q ss_pred cchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc-----cccCCCCcEEEEeeCCCCccC----------cHHHHHHHH
Q 004149 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 728 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~P~Lii~G~~D~~vp----------~~~~~~~~~ 728 (771)
..+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 163 -------------------------~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 163 -------------------------EAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp -------------------------GHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 0111111111 112234678999999998432 123344445
Q ss_pred HHHhCCCCEEEEEeCCCCccC
Q 004149 729 ALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.|+..+.+..+..++ ++|..
T Consensus 218 ~l~~~g~~~~~~~~~-G~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFP-GGHDW 237 (251)
T ss_dssp HCCCEECTTESEEEH-SESSH
T ss_pred HHHHcCCCceEEEec-Cccch
Confidence 555667788888887 46743
No 140
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1e-08 Score=101.03 Aligned_cols=228 Identities=14% Similarity=0.179 Sum_probs=135.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec---CCc-ccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++++++|+.+ |+.+...+.-.++.+.+.|.....++. ... .|..- .-.-.-...++|||++|+..
T Consensus 91 p~yvsvd~~g~~v-f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ-~~~h~H~a~~tP~~~~l~v~------ 162 (346)
T COG2706 91 PCYVSVDEDGRFV-FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ-ESPHVHSANFTPDGRYLVVP------ 162 (346)
T ss_pred CeEEEECCCCCEE-EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc-cCCccceeeeCCCCCEEEEe------
Confidence 3678999999988 555554455556666555655544432 111 11000 00001266799999877664
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~ 254 (771)
|. +...|++++++.|...... ..+...+...++|+|+||
T Consensus 163 ------------------------------DL-------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-- 203 (346)
T COG2706 163 ------------------------------DL-------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-- 203 (346)
T ss_pred ------------------------------ec-------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc--
Confidence 22 2367888888888766552 123445788999999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---------CCccccceeec
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFS 325 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---------~~~~~~~p~~S 325 (771)
++|+-.+- +..-.+|.++- ..++.++|.. +.........|
T Consensus 204 ---~aY~v~EL-----------~stV~v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 204 ---YAYLVNEL-----------NSTVDVLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ---EEEEEecc-----------CCEEEEEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 66655322 22223444442 3355444321 12245678899
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|||+.| |.+++. +..-.+|.+|-.++... ++. ...+.+.+| ..+.++++|+.|++
T Consensus 253 ~dGrFL-YasNRg-------~dsI~~f~V~~~~g~L~--------~~~--~~~teg~~P-------R~F~i~~~g~~Lia 307 (346)
T COG2706 253 PDGRFL-YASNRG-------HDSIAVFSVDPDGGKLE--------LVG--ITPTEGQFP-------RDFNINPSGRFLIA 307 (346)
T ss_pred CCCCEE-EEecCC-------CCeEEEEEEcCCCCEEE--------EEE--EeccCCcCC-------ccceeCCCCCEEEE
Confidence 999976 777774 22223344444443321 111 111223333 57789999998888
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCC
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
+....+...+|.+|..||+++.+...
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccc
Confidence 87777888999999999999988653
No 141
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=2.7e-08 Score=105.02 Aligned_cols=257 Identities=14% Similarity=0.056 Sum_probs=133.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++||||+.|+...... +.-.+|.++..+....+-...... ....+.|+|||+.|+....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~~~g~~l~v~~~------- 99 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPG--------SPTHISTDHQGRFLFSASY------- 99 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCC--------CceEEEECCCCCEEEEEEc-------
Confidence 456679999999885544322 333335554333332222211110 0147899999997765432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Ccee-eccCCCCCCccceEEEecCCCCCccE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~-~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+++++. +... .+...+........+++|||+.
T Consensus 100 ------------------------------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~---- 139 (330)
T PRK11028 100 ------------------------------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT---- 139 (330)
T ss_pred ------------------------------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE----
Confidence 125777888753 2221 1110222234556789999986
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCCCccccceeecCCCCE
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~~~~~~~p~~SpDG~~ 330 (771)
++... . ....|+++|+. ..+... ++. ........+|+|||++
T Consensus 140 l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 140 LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecC-CCCCCceEEECCCCCE
Confidence 55443 2 22378888872 222221 111 1233567899999997
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
++... .. ...|.+++++.+... + ..+..+...+ ..+++- .....+.++|||++||.+....
T Consensus 189 lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p--~~~~~~--~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 189 AYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMP--ADFSDT--RWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred EEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCC--CcCCCC--ccceeEEECCCCCEEEEecCCC
Confidence 75544 32 256888887632110 0 0011111011 111110 0112466899999887764445
Q ss_pred CeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 411 SSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
+...+|.++.+++..+.+. ..........+++||++|+.+.... ..+.++++
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~---~~v~v~~~ 303 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS---HHISVYEI 303 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC---CcEEEEEE
Confidence 5666777766555443322 1111223457899999998876432 23555444
No 142
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.21 E-value=7.5e-09 Score=109.29 Aligned_cols=256 Identities=9% Similarity=0.077 Sum_probs=135.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+.|+... .. ...+..++++ +.+....+...+.+ +.....+++|||++|+.... .++.-.+|.
T Consensus 42 ~spd~~~lyv~~-~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~-~~~~v~v~~ 108 (330)
T PRK11028 42 ISPDKRHLYVGV-RP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASY-NANCVSVSP 108 (330)
T ss_pred ECCCCCEEEEEE-CC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEc-CCCeEEEEE
Confidence 467887765432 21 2355555564 22222222111111 23567899999998865543 223333444
Q ss_pred EecCCcceEEEe-c--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 129 LWSQSQLEKEFH-V--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+..++....... . .... .+..++|||++|+....
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~--------------------------------- 145 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL--------------------------------- 145 (330)
T ss_pred ECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC---------------------------------
Confidence 432332222221 1 1122 36789999987765422
Q ss_pred CCcCcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 206 EDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
....|++||+++ +.+.... ..+....+..++|+|||+. + |++++. ..
T Consensus 146 ----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~~ 197 (330)
T PRK11028 146 ----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------NS 197 (330)
T ss_pred ----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------CC
Confidence 236899999876 3332110 0122335678899999995 4 444322 23
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCccee---cC---CC---CccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVN---LT---ES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
.|..++++. .+++.+. +. .. ........++|||++|+. +++. ...|
T Consensus 198 ~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~I 252 (330)
T PRK11028 198 SVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASLI 252 (330)
T ss_pred EEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCeE
Confidence 676666621 1222211 11 10 111224678999997655 4442 2457
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+++++..+... .++..... +. ....+.++|||++|+.+....+...+|.++..+|.++.+.
T Consensus 253 ~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 253 SVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 777775433211 01111111 00 2346789999999988766577788999988888876653
No 143
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.20 E-value=1e-08 Score=111.85 Aligned_cols=273 Identities=14% Similarity=0.058 Sum_probs=158.4
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++||||+++||....++ +...+++++ ..|+. +.+. .... +.++.|++||+.++|...+...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l~d~i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--LPDGIENPK---------FSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--EEEEEEEEE---------SEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--cCCcccccc---------cceEEEeCCCCEEEEEEeCccccc
Confidence 35789999999999876653 345566666 44432 2211 1111 124899999999999876553210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCCCCCc-cceEEEecCCCCCc
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLS-VGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~~~~~-~~~~~wspDg~~~~ 255 (771)
. .......||.+.+.++... .+-..+.... .-.+.+|+||+.
T Consensus 196 ~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-- 240 (414)
T PF02897_consen 196 S---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-- 240 (414)
T ss_dssp ----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE--
T ss_pred c---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE--
Confidence 0 0112468999999887543 3311112212 446789999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+..... .+.+|++++.... ......+.|........... ...|..+++.+
T Consensus 241 --l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~T 294 (414)
T PF02897_consen 241 --LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYV-DHHGDRLYILT 294 (414)
T ss_dssp --EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEE-EEETTEEEEEE
T ss_pred --EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEE-EccCCEEEEee
Confidence 7766533221 2589999983100 00135566654333322222 12277888888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
+.. ....+|+.+++....... ... ++....++ ..-..++..+.+|++....++...|
T Consensus 295 n~~-------a~~~~l~~~~l~~~~~~~----~~~---~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 295 NDD-------APNGRLVAVDLADPSPAE----WWT---VLIPEDED---------VSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -TT--------TT-EEEEEETTSTSGGG----EEE---EEE--SSS---------EEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCC-------CCCcEEEEeccccccccc----cee---EEcCCCCc---------eeEEEEEEECCEEEEEEEECCccEE
Confidence 865 235689999987655310 000 01000000 0011244567789999889999999
Q ss_pred EEEECC-CCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 416 ISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d~~-tg~~~~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
..+++. +.....+..... .+.......+++.+++..+++.+|+.+|.+++.+++
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 999998 666666654433 223333446789999999999999999999987764
No 144
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.20 E-value=3.9e-10 Score=135.63 Aligned_cols=235 Identities=16% Similarity=0.195 Sum_probs=133.3
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 521 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~--~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
++.+.|.|..... ....|.||++||.+.... .|.. .+..|+++||.|+++|+. .+. ... .......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~~--~~~~~~l 121 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KVE--GGMERNL 121 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hhH--cCccCCH
Confidence 5566777763211 234578999999765533 3332 378899999999999963 211 110 0000000
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-CCceeEEEecCCccchhhh----------------
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM---------------- 656 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~a~v~~~p~~~~~~~---------------- 656 (771)
...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+.+..+|+...
T Consensus 122 ~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~ 198 (994)
T PRK07868 122 ADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADF 198 (994)
T ss_pred HHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhccccc
Confidence 111233344444444332 35799999999999999888754 5589988876655443110
Q ss_pred -----hcCCCCCcchhh------------h-------hccC-CCC------CcCCCC----CC-----hhhHHHHhhcCc
Q 004149 657 -----VGTTDIPDWCYV------------E-------SYGS-KGK------DSFTES----PS-----VEDLTRFHSKSP 696 (771)
Q Consensus 657 -----~~~~~~~~~~~~------------~-------~~~~-~~~------~~~~~~----~~-----~~~~~~~~~~sp 696 (771)
.....++.|... . .+.. ... ..+... .. .+....+...+.
T Consensus 199 ~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~ 278 (994)
T PRK07868 199 MADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNR 278 (994)
T ss_pred chhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCc
Confidence 000111111000 0 0000 000 000000 00 001111111111
Q ss_pred c-----------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE-EEeCCCCccCC--CCCChHHHHHHH
Q 004149 697 I-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGIE--RPQSDFESFLNI 762 (771)
Q Consensus 697 ~-----------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~~--~~~~~~~~~~~i 762 (771)
. ..+.++++|+|+++|++|.++|++.++.+.+.+.. .++ .+++++||... ......+.|..+
T Consensus 279 ~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i 354 (994)
T PRK07868 279 MMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTV 354 (994)
T ss_pred ccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHH
Confidence 1 13678899999999999999999999988776643 454 57789999743 455667899999
Q ss_pred HHHHHHH
Q 004149 763 GLWFKKY 769 (771)
Q Consensus 763 ~~wl~~~ 769 (771)
.+||.++
T Consensus 355 ~~wl~~~ 361 (994)
T PRK07868 355 ADWVKWL 361 (994)
T ss_pred HHHHHHh
Confidence 9999875
No 145
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-09 Score=102.72 Aligned_cols=266 Identities=15% Similarity=0.135 Sum_probs=156.5
Q ss_pred eeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CC
Q 004149 71 KKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQ 143 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 143 (771)
++.+.+|.+..++.+ .++++... ..+...+.|+||.+.+-.+-+. ...+| .+++.++.+-. ..
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecCC
Confidence 356666666555332 13443322 4577889999999875544333 67777 34455444433 44
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC-CCCCCcccccCCcC--cccCCccCceE
Q 004149 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWG--ETYAGKRQPSL 220 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g--~~~~~~~~~~l 220 (771)
++ .+++||||.++|+..+.+++.+ .|+....-.-....+. ..|...+.|+|.-. ..+...-+..+
T Consensus 107 dV----------lsva~s~dn~qivSGSrDkTik--lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 107 DV----------LSVAFSTDNRQIVSGSRDKTIK--LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred ce----------EEEEecCCCceeecCCCcceee--eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 55 5999999999999988877654 3332111111111112 67777788888732 22334456789
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
-+||+.+-+.+.-- ......+...+.||||.. ++..+ ..+.++++|+
T Consensus 175 KvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL------------- 221 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL------------- 221 (315)
T ss_pred EEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc-------------
Confidence 99999988776652 234457788999999997 66643 4458899998
Q ss_pred cCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC
Q 004149 301 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (771)
+.++.-.-.+....+.+.+|||.-=+|+-... ..|.+||+.++....-. ..+.+- +.
T Consensus 222 ----~~~k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l-~~d~~g-----~s- 278 (315)
T KOG0279|consen 222 ----NEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEEL-KLDGIG-----PS- 278 (315)
T ss_pred ----cCCceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhc-cccccc-----cc-
Confidence 44443222234556889999998655543332 23888998876542110 000000 00
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
..-.+.+| -+++||+||.+||. ...++..++|.+
T Consensus 279 ~~~~~~~c---lslaws~dG~tLf~-g~td~~irv~qv 312 (315)
T KOG0279|consen 279 SKAGDPIC---LSLAWSADGQTLFA-GYTDNVIRVWQV 312 (315)
T ss_pred cccCCcEE---EEEEEcCCCcEEEe-eecCCcEEEEEe
Confidence 00000111 26789999998854 344555666654
No 146
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.19 E-value=3.9e-10 Score=103.82 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=136.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.-.||..+.+..|... ++.+--+++-|+.+. ....|.+.+..++++||.|+.+||||.+++.........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 3457788888777533 223323334454433 2346777888999999999999999976654332222222222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcC-CCCC---cchhhh
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIP---DWCYVE 669 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~-~~~~---~~~~~~ 669 (771)
.-...|+.++++++.+.. ..-....+|||+||++...+ .+++..-.++|..++. .+....+. .... -|....
T Consensus 85 DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~k~~a~~vfG~ga-gwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHPKYAAFAVFGSGA-GWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCcccceeeEecccc-ccccchhhhhcccceeeccccc
Confidence 334678999999988742 24568999999999976644 4456322333333221 12111111 0000 011000
Q ss_pred h----ccCCCCCcCCCC----CC--hhhHHHHh------hcCcc-----ccccCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004149 670 S----YGSKGKDSFTES----PS--VEDLTRFH------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 670 ~----~~~~~~~~~~~~----~~--~~~~~~~~------~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~ 728 (771)
. +....-..+.+. |. ..++..+. ..+|. .....+++|++.+...+|+.+|+...+.|..
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 0 000000001111 10 11222222 12222 2356788999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHH
Q 004149 729 ALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~wl 766 (771)
..+++ +.++..++.+ ||+-..-+..+..+++++.||
T Consensus 241 ~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 241 FYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 88765 4666666655 786443333356788999887
No 147
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.17 E-value=1.1e-09 Score=111.46 Aligned_cols=204 Identities=19% Similarity=0.235 Sum_probs=119.8
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 557 ~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
..+..+.++||+|+++||.|.+ ..+. ........+-|.++|.+.+... +.....+++++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg---~~y~---~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLG---TPYL---NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCC---Cccc---CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 3566777999999999999843 3321 1111112233444444444332 2123468999999999999988775
Q ss_pred hC----CCc---eeEEEecCCccchhhhhcCCCCCcch----------------------------------------hh
Q 004149 636 QA----PDK---FVAAAARNPLCNLALMVGTTDIPDWC----------------------------------------YV 668 (771)
Q Consensus 636 ~~----p~~---~~a~v~~~p~~~~~~~~~~~~~~~~~----------------------------------------~~ 668 (771)
.. |++ +.++++.+|..++..+....+...+. ..
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 42 554 78888888888875443322111000 00
Q ss_pred hhccCCCCCcC--------CCCCC-h--hhH-HHHhhcCc-cccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC-
Q 004149 669 ESYGSKGKDSF--------TESPS-V--EDL-TRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG- 734 (771)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~-~--~~~-~~~~~~sp-~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g- 734 (771)
..........+ ..... . ... ..+.+.+. ...-..-+.|++|.||..|.+||+....++++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 00000000000 00000 0 001 11111111 00111235899999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+++++.++..+|..... ......+.||...+
T Consensus 251 a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 799999999999965422 23467788887765
No 148
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.16 E-value=2.6e-10 Score=103.01 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=127.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECC--CCCCCCChh--hhhc-CCC
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNY--RGSLGFGEE--ALQS-LPG 590 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~V~~~d~--rG~~~~g~~--~~~~-~~~ 590 (771)
..+.--+|.|+....+++.|++.++.|-... ...+. ..-+...++|++|+.||- ||..--|++ |--. ..+
T Consensus 26 c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAG 103 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAG 103 (283)
T ss_pred cceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCce
Confidence 4456668888877777889999999995543 22222 233445689999999994 664322221 1000 000
Q ss_pred ---CccccchhhHHHHHHHHHH---------cCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhc
Q 004149 591 ---KVGSQDVNDVLTAIDHVID---------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658 (771)
Q Consensus 591 ---~~~~~~~~D~~~~i~~l~~---------~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~ 658 (771)
+.....+..--+..+|+.+ .-.+|+.+++|.||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 104 FYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c-- 181 (283)
T KOG3101|consen 104 FYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC-- 181 (283)
T ss_pred eEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC--
Confidence 0000011111222333322 23378999999999999999999999999999999999999875432
Q ss_pred CCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccc---cccCCCCcEEEEeeCCCCccCcHHH--HHHHHHHHhC
Q 004149 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK 733 (771)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i~~P~Lii~G~~D~~vp~~~~--~~~~~~l~~~ 733 (771)
.| +......|.+. +...|...++.. .......-+||-.|..|.+.+ +|. +.+.++.+..
T Consensus 182 -----pW------GqKAf~gYLG~----~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~ 245 (283)
T KOG3101|consen 182 -----PW------GQKAFTGYLGD----NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKAT 245 (283)
T ss_pred -----cc------hHHHhhcccCC----ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhcc
Confidence 12 22222223332 233444444443 344445569999999999875 221 2344444422
Q ss_pred -CCCEEEEEeCCCCccCC
Q 004149 734 -GVETKVIVFPNDVHGIE 750 (771)
Q Consensus 734 -g~~~~~~~~~~~~H~~~ 750 (771)
..++.+...++-+|.+.
T Consensus 246 ~~~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 246 WQAPVVFRLQEGYDHSYY 263 (283)
T ss_pred ccccEEEEeecCCCccee
Confidence 35788888889999765
No 149
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.15 E-value=1.9e-09 Score=107.13 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=165.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CCcccccccCCCcccceeecCC--CCeEEEEecCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~ 174 (771)
.+....||+|++.||..+-.+ ...+| .+.+....+.. ...+ +++.|+|. +..||..+.+.
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~gH~~~v----------~~~~fhP~~~~~~lat~s~Dg 241 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRGHTSRV----------GAAVFHPVDSDLNLATASADG 241 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEeccccce----------eeEEEccCCCccceeeeccCC
Confidence 467788999999998766543 44555 22233333332 2222 68999997 67888888877
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ .|.............+..-...+.|.|++.-+.+...+..=.+||+.++....+. -....++...+|.|||.
T Consensus 242 tvk--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS-- 316 (459)
T KOG0272|consen 242 TVK--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS-- 316 (459)
T ss_pred cee--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc--
Confidence 655 3433222222233334444556778888766666666777788999998765552 22344788999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+.++- .+.-..|| |+ -+|. .-.|..+...+.++.|||+|-.||.
T Consensus 317 ---L~~tGG------------lD~~~RvW--Dl-----------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 317 ---LAATGG------------LDSLGRVW--DL-----------------RTGRCIMFLAGHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred ---eeeccC------------ccchhhee--ec-----------------ccCcEEEEecccccceeeEeECCCceEEee
Confidence 554431 01112344 44 3444 4556667778999999999999998
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 413 (771)
.+.++ ...+||+.......+.... ..-+..++|+|++...+++++.++..
T Consensus 363 gs~Dn-----------t~kVWDLR~r~~ly~ipAH-------------------~nlVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 363 GSSDN-----------TCKVWDLRMRSELYTIPAH-------------------SNLVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred cCCCC-----------cEEEeeecccccceecccc-------------------cchhhheEecccCCeEEEEcccCcce
Confidence 77664 4667777654432221111 12356788999777788888899999
Q ss_pred EEEEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEE
Q 004149 414 VIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 414 ~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+||. ..+... +.|....+-+.....++|+..++..+
T Consensus 413 kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 413 KIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred eeec--CCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 9995 234433 33333334444456677777665443
No 150
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.14 E-value=7.8e-09 Score=105.62 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=46.7
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+...+|||||++.|-+..++ .+++.+ ..|+..-.+.-.....|.| -.++||||+++++.++-++..+
T Consensus 193 V~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~~aHkGsI------falsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDSDAHKGSI------FALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCCCCccccE------EEEEECCCCceEEEecCCceEE
Confidence 67899999999998875543 366666 5555444444333444455 6899999999999988766543
No 151
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=7e-08 Score=102.03 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=141.4
Q ss_pred cceEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.....++||++++|..+.+. +.+.-..|.+... +....+-.....-.+. -.++.+|||+.|+.+...
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-------~~i~~~~~g~~l~vany~--- 107 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-------CHIAVDPDGRFLYVANYG--- 107 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-------EEEEECTTSSEEEEEETT---
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-------EEEEEecCCCEEEEEEcc---
Confidence 34567789999988666554 2233445555533 5555544433111101 267899999977665321
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Cceeecc--------C----CCCCCccc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVK--------G----IPKSLSVG 243 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~--------~----~~~~~~~~ 243 (771)
...+.+++++. |.+.... + ........
T Consensus 108 ----------------------------------------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 108 ----------------------------------------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp ----------------------------------------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred ----------------------------------------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 25666676654 4333220 0 01122455
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee---cC-CCCccc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LT-ESISSA 319 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt-~~~~~~ 319 (771)
++.++|||+. + |+... ....|+.++++. .++++.. +. ......
T Consensus 148 ~v~~~pdg~~----v-~v~dl-------------G~D~v~~~~~~~---------------~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 148 QVVFSPDGRF----V-YVPDL-------------GADRVYVYDIDD---------------DTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp EEEE-TTSSE----E-EEEET-------------TTTEEEEEEE-T---------------TS-TEEEEEEEECSTTSSE
T ss_pred eEEECCCCCE----E-EEEec-------------CCCEEEEEEEeC---------------CCceEEEeeccccccCCCC
Confidence 7899999995 5 45432 223677777731 2222322 11 223347
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
+..+|+|||++++.+ ++. .+.|.++++. ++..+.+ ..+..... .+.+. .....+.+|
T Consensus 195 Rh~~f~pdg~~~Yv~-~e~---------s~~v~v~~~~~~~g~~~~~-----~~~~~~~~----~~~~~--~~~~~i~is 253 (345)
T PF10282_consen 195 RHLAFSPDGKYAYVV-NEL---------SNTVSVFDYDPSDGSLTEI-----QTISTLPE----GFTGE--NAPAEIAIS 253 (345)
T ss_dssp EEEEE-TTSSEEEEE-ETT---------TTEEEEEEEETTTTEEEEE-----EEEESCET----TSCSS--SSEEEEEE-
T ss_pred cEEEEcCCcCEEEEe-cCC---------CCcEEEEeecccCCceeEE-----EEeeeccc----ccccc--CCceeEEEe
Confidence 889999999976554 443 2457777766 3321111 11111111 11110 023467789
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
|||++||++....+...+|.+|..+|+++.+..- ........++++|++|+.+....+. |.+++.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~---v~vf~~ 321 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT---VSVFDI 321 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE---EEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe---EEEEEE
Confidence 9999998887777777888888888888876432 1224556789999999887655444 555444
No 152
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.12 E-value=1e-08 Score=105.01 Aligned_cols=268 Identities=16% Similarity=0.186 Sum_probs=151.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|+|+|+.|++.... +.-.+|.+ ..+............ ...+.|+|+++.|+..+.+....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~-~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~i~- 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDL-ETGELLRTLKGHTGP---------VRDVAASADGTYLASGSSDKTIR- 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEe-eCCCcEEEEecCCcc---------eeEEEECCCCCEEEEEcCCCeEE-
Confidence 457889999999999887643 22222322 222222222211111 14889999998888877544321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+............+........|.++ +..++... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 77 -i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---- 149 (289)
T cd00200 77 -LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF---- 149 (289)
T ss_pred -EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE----
Confidence 2222211111111122222334556666 34444333 789999999866654441 223446788999999764
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....|+++|+ ..++ ...+......+....|+|+|+.|++.+.
T Consensus 150 l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 150 VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEecC
Confidence 44332 2236888887 4333 3444445556888999999999888776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ ..|.++|+.++......... ...+..+.|++++. +++....++. |+
T Consensus 198 ~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~~--i~ 244 (289)
T cd00200 198 D-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDGT--IR 244 (289)
T ss_pred C-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCCc--EE
Confidence 3 35888888765432221110 01245678999965 5455443444 55
Q ss_pred EEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004149 417 SVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~-~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.+++.+++...... ....+....++++++.++...
T Consensus 245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 55666655444333 233345566777777665544
No 153
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.12 E-value=5.1e-10 Score=110.54 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004149 536 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~-~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
...+|||+-|-...... .....++..|...||.|+.+.++-+ .|+|... ...+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~S--------L~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSS--------LDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcch--------hhhHHHHHHHHHHHHHHhhcc
Confidence 45689999884433223 3444567777778999999998852 3454332 2357999999999999872
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCC-----CceeEEEecCCccchhhhhcCCCC-Ccch----hhhhc-----cCCC-
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY-----GSKG- 675 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~a~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~-----~~~~- 675 (771)
....++|+|+|||-|.+-+++++.... ..+.++|+.+|+.|...+...... .... ....+ +...
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135789999999999999999987642 569999999999886433221110 0000 00000 0000
Q ss_pred ----CCcCC-CCCChhhHHHHhhcCc----------------cccccCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004149 676 ----KDSFT-ESPSVEDLTRFHSKSP----------------ISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ----~~~~~-~~~~~~~~~~~~~~sp----------------~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
...+. ..|. .....+.-.+| .....+++.|+|++.+++|+.||... -+++.++++..
T Consensus 184 p~~~~~~~~~~~Pi-TA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTPI-TAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS----HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------
T ss_pred eccccccccCCCcc-cHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccc
Confidence 00000 1111 11111110111 12456778899999999999998643 34566666554
Q ss_pred CC----CEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHH
Q 004149 734 GV----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 767 (771)
Q Consensus 734 g~----~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~wl~ 767 (771)
-. ....-++||+.|.+..+... ....+++..||+
T Consensus 263 ~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 263 TNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 22 12345899999998865432 356667777764
No 154
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.12 E-value=3.7e-11 Score=119.72 Aligned_cols=174 Identities=16% Similarity=0.241 Sum_probs=106.4
Q ss_pred cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe
Q 004149 567 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 567 ~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 646 (771)
|.|+++|.||.+.+... ..........+|+.+.++.+++.. ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999995543210 001233345789999999988864 345599999999999999999999999999999
Q ss_pred cCCcc--ch-h---hhhc---CCCC----Cc------------ch----hhhhc-cCCCC-----CcCCCC--CCh----
Q 004149 647 RNPLC--NL-A---LMVG---TTDI----PD------------WC----YVESY-GSKGK-----DSFTES--PSV---- 685 (771)
Q Consensus 647 ~~p~~--~~-~---~~~~---~~~~----~~------------~~----~~~~~-~~~~~-----~~~~~~--~~~---- 685 (771)
.++.. .. . .... .... .. +. ..... ..... ..+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 00 0 0000 0000 00 00 00000 00000 000000 000
Q ss_pred --hhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 686 --EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 --~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+...++...+..+++|+|+++|++|.++|+.....+.+.+.+ .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 00011122233345678999999999999999999888886666554 89999999999754
No 155
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.07 E-value=2.5e-09 Score=106.36 Aligned_cols=237 Identities=13% Similarity=0.129 Sum_probs=151.2
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|+|. +..||..+.++ ...+|.-.+...+-++.... . .+..++|.|+|++|+..+.+.+-
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-~------RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-A------RVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-h------hheeeeecCCCceeeecccccch
Confidence 56888999997 55677655543 45566322222222222111 1 12689999999999998877653
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
+ .|+...+........+........|.+|+.-..++.-+.-=.+||+.+|...-+ ..+. ..+-++.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 566555666666667777777889999965555565566668899999987665 3443 36789999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecC-CCCEEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~Sp-DG~~l~f~ 334 (771)
|+..+. +..+.||.+. .....-.+..+..-+..++|+| -|++|+..
T Consensus 360 --lATgs~-------------Dnt~kVWDLR------------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS-------------DNTCKVWDLR------------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC-------------CCcEEEeeec------------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 887661 2223444443 2233555666677789999999 67778777
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+.+. .+.+|.-.+....+...+.. .-+.++..|+||..| .+++.+...+
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCceee
Confidence 7664 24444444444332222221 123466789999855 5666777777
Q ss_pred EEE
Q 004149 415 IIS 417 (771)
Q Consensus 415 l~~ 417 (771)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 774
No 156
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.4e-07 Score=91.45 Aligned_cols=288 Identities=15% Similarity=0.093 Sum_probs=157.1
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccc
Q 004149 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 149 (771)
+.|+++.+++..++... ...-.+.+..+..+|+|+++.|..+-..+ .+.-.-|.++ ++|....+-......+..
T Consensus 16 ~gI~v~~ld~~~g~l~~---~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p- 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSL---LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP- 91 (346)
T ss_pred CceEEEEEeCcccccch---hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-
Confidence 45666667644443221 11112335677889999999986554442 2444566776 446655444332211100
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-C
Q 004149 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-G 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~ 228 (771)
-.++.++||+.|+.+.... ..|-++.+.. |
T Consensus 92 ------~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~dG 122 (346)
T COG2706 92 ------CYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQADG 122 (346)
T ss_pred ------eEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccCC
Confidence 2678999998665543221 2333333321 2
Q ss_pred ceeecc-------CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 229 EVQAVK-------GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 229 ~~~~l~-------~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+..+. ..+. ..-.-...+.|||+. |+... + ..-+|+++++
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-------L-------G~Dri~~y~~---------- 174 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-------L-------GTDRIFLYDL---------- 174 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-------c-------CCceEEEEEc----------
Confidence 221110 0011 111345679999996 65543 1 2226888888
Q ss_pred hhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 298 ELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
+.|...... ......+...|.|+|+ ++|+-++- ++.-.+|.++-..++..++ -.
T Consensus 175 -------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-~aY~v~EL-------~stV~v~~y~~~~g~~~~l-------Q~ 232 (346)
T COG2706 175 -------DDGKLTPADPAEVKPGAGPRHIVFHPNGK-YAYLVNEL-------NSTVDVLEYNPAVGKFEEL-------QT 232 (346)
T ss_pred -------ccCccccccccccCCCCCcceEEEcCCCc-EEEEEecc-------CCEEEEEEEcCCCceEEEe-------ee
Confidence 334332222 3344578899999999 45666554 1223344444333333221 11
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCC-CceeeEEeecCCEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~-~~~~~~~s~d~~~l~~~ 450 (771)
+-.. .++|.|-. ....+..|+||+.||++....+...+|.|+..+|++..+.. ..+ ......++++|+.|+++
T Consensus 233 i~tl--P~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 233 IDTL--PEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eccC--ccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1111 23455421 23456689999988877666677889999999998776643 222 13445678899988888
Q ss_pred EeCCCCCCeEEEEEecc
Q 004149 451 SSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 451 ~s~~~~p~~l~~~~~~~ 467 (771)
....+. -.+|.++-.+
T Consensus 309 ~q~sd~-i~vf~~d~~T 324 (346)
T COG2706 309 NQKSDN-ITVFERDKET 324 (346)
T ss_pred ccCCCc-EEEEEEcCCC
Confidence 876666 3455554433
No 157
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.06 E-value=5.5e-09 Score=98.48 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=88.7
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+....++.|. ..+.+|+|+|+||..- ....|....+.++++||.|++|+.-... ..-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~-----------~p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLF-----------PPDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhccc-----------CCCchHHHHH
Confidence 3455688887 6788999999999432 2446777888999999999999975421 1123345788
Q ss_pred HHHHHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHHhCC--CceeEEEecCCccc
Q 004149 600 VLTAIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~~ 652 (771)
..+.++|+.+.- ..+..+++++|||.||-.|..+|..+. -.|.++|.+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 889999987641 157789999999999999999998662 24788888888753
No 158
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.06 E-value=3e-08 Score=94.23 Aligned_cols=263 Identities=14% Similarity=0.158 Sum_probs=162.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+-+...-||+|+++|+-.+..+ .+++|+ ..+..+.+.++.. |+..-+|||.|+.||...-+..=
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcCcee
Confidence 4578899999999998877665 677883 3444555555332 34688999999999986543211
Q ss_pred CCCCccCCC------CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-
Q 004149 177 SKPTFSLGS------TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 249 (771)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp- 249 (771)
..+.... .+..+....+..|..-..|..| +..+++.++....+||+++|+....- ......+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0111110 0111223345555555556665 77888899999999999999876652 23344677889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
|++. .+-.+ | +..-+++|+ ..+. .+.+..+...+.+++|-|+|
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~-----------------R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDV-----------------RSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeec-----------------cCcceeEeecccccccceEEEccCC
Confidence 8887 44333 1 124556665 3344 45566677789999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
..++..+.+. ...++|+..+....+-.... .. ..+.++.||..|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~-----------~~------~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDS-----------II------CGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCc-----------cc------CCceeEEEccccc-EEEeee
Confidence 9776655442 35567777765533322110 01 1366889999998 556554
Q ss_pred eCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCE
Q 004149 409 WGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~ 446 (771)
.+.+..+| |.-.++..-+ .....-++-...+|||--
T Consensus 293 ~d~~c~vW--Dtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 293 DDFTCNVW--DTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cCCceeEe--eccccceEEEeeccCCeeEEEEECCCCcE
Confidence 44444444 6555555544 333344555677777753
No 159
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.06 E-value=4.9e-09 Score=99.45 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=72.7
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
++..++-.|. ....|+++++|||+.+. -.|...+..+. ..-..|+++|.|| +|++-......--.....+
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 5666666663 45679999999988774 46777777663 4567889999999 5544322111111223467
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
|+.+.++++... .+..|.|+||||||.++.+.+..
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 888888777643 35679999999999999888764
No 160
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.06 E-value=7.9e-09 Score=114.73 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=72.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 120 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 120 (771)
.|.+|+||++++|+....+ ..+.+...||+.+. ++..+++|... ....|+|||||+.|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5556889999999987666 33346778999764 33446776553 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 121 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 121 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+..+++.++ +++...+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 1344566655 4444333 222223 7999999999999985
No 161
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.06 E-value=1.1e-08 Score=88.39 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC--CCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS--LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~--~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.-+||+.||.+..+.+......+..|+.+|+.|..++++=. --.|+. .+..-...-....+.++..|.+. .+
T Consensus 14 ~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l~ 87 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--LA 87 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--cc
Confidence 35788889987777777777788899999999999997421 101100 01111112233445555666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
..++.+-|+||||-++.+++..-...+.++++. .|+.- -++ | +..
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pGK---------P-----e~~-- 133 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PGK---------P-----EQL-- 133 (213)
T ss_pred CCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CCC---------c-----ccc--
Confidence 678999999999999999987543336666543 23310 011 1 111
Q ss_pred cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChHHHHHHHHH
Q 004149 694 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDFESFLNIGL 764 (771)
Q Consensus 694 ~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~~~~~~i~~ 764 (771)
-..++..+++|+||.+|+.|++-..++...+ .| ..+++++++.++.|.+-- ..+.....+++..
T Consensus 134 --Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~ 206 (213)
T COG3571 134 --RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAG 206 (213)
T ss_pred --hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHHH
Confidence 1356788999999999999998765544211 12 246899999999997642 1222334456777
Q ss_pred HHHH
Q 004149 765 WFKK 768 (771)
Q Consensus 765 wl~~ 768 (771)
|..+
T Consensus 207 ~~~~ 210 (213)
T COG3571 207 WARR 210 (213)
T ss_pred HHhh
Confidence 7654
No 162
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.05 E-value=9e-09 Score=103.79 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=161.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+-||..||+....+ ..++| ..|.....+.... |. +-.+.|+-+|.+|+-..-+++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~Hk---gP------I~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQHK---GP------IFSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhccC---Cc------eEEEEEcCCCCEEEeccCCccE-
Confidence 4588899999999999987765 67788 5555443333221 12 2589999999999887655432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.|+............+.....++.|..+ .+-........|+|+-+....+..-. +.....+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~L---- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSL---- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCce----
Confidence 12332211111111111111122333322 12222223456777777665543331 335567888999999996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+-.+.. ..-.||... ++.....|..+...+....|||+|.-. ...+.
T Consensus 374 LaS~SdD-------------~TlkiWs~~------------------~~~~~~~l~~Hskei~t~~wsp~g~v~-~n~~~ 421 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMG------------------QSNSVHDLQAHSKEIYTIKWSPTGPVT-SNPNM 421 (524)
T ss_pred EEEecCC-------------CeeEeeecC------------------CCcchhhhhhhccceeeEeecCCCCcc-CCCcC
Confidence 6665521 112455443 455566777777778889999998631 11111
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
..... .....+.+.+||+..+........ +...++.++|||||++| .+.+.++...||
T Consensus 422 ~~~l~-sas~dstV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsGs~dg~V~iw- 479 (524)
T KOG0273|consen 422 NLMLA-SASFDSTVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASGSLDGCVHIW- 479 (524)
T ss_pred CceEE-EeecCCeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-EecCCCCeeEec-
Confidence 10000 000123466777766554221111 11135788999999966 455566666676
Q ss_pred EECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004149 418 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
+..++++.+-..+.+.+....|+.+|+.|....+.
T Consensus 480 -s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 480 -STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred -cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 56688888777666666777889999888766653
No 163
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.05 E-value=9.1e-09 Score=112.68 Aligned_cols=279 Identities=14% Similarity=0.131 Sum_probs=169.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|||||+.++...... +..+|. ......+..+ .+..- .+..++|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~~~~~~l-~~h~~------~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKSNLLREL-SGHTR------GVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccchhhccc-ccccc------ceeeeEECCCCcEEEEecCCceE
Confidence 3466789999999988765443 555662 2221011111 11111 23689999999999888887765
Q ss_pred CCCCccC-CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 177 SKPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+ .|+. ......+.+..+..+.....|.++....+.+..+..+.+||+.+++..... ......+....|++||..
T Consensus 228 r--iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 228 R--IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL-- 302 (456)
T ss_pred E--EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE--
Confidence 5 4554 222344566678888888899999767778888899999999998876662 233347788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCc--cccceeecCCCCE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESIS--SAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~--~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ .++.. ..+..... .+....|||+|++
T Consensus 303 --l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 303 --LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred --EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 66654 2336888887 56652 34443333 3788999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+-...+ ..|..||+..+........... . .+ -...+..+++|+.+ ++...+
T Consensus 349 ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~----------~----~~--~~~~~~~~~~~~~i-~sg~~d 400 (456)
T KOG0266|consen 349 LLSASLD-----------RTLKLWDLRSGKSVGTYTGHSN----------L----VR--CIFSPTLSTGGKLI-YSGSED 400 (456)
T ss_pred EEEecCC-----------CeEEEEEccCCcceeeecccCC----------c----ce--eEecccccCCCCeE-EEEeCC
Confidence 8765544 3577888876654222111100 0 00 12234447788755 454445
Q ss_pred CeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 411 SSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
+. ++.+|+.++...+..... ..+....+.+..+.++......+..-
T Consensus 401 ~~--v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 401 GS--VYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred ce--EEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence 44 555577766544433332 22333445555555554443344433
No 164
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.05 E-value=1.4e-09 Score=114.66 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC------Chhhhhc--------------CCCCccc
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF------GEEALQS--------------LPGKVGS 594 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~------g~~~~~~--------------~~~~~~~ 594 (771)
.++|+|||-||.++. ...|...+..||++||+|+++++|-.... ....... .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 779999999997665 45788999999999999999999942211 1110000 0000000
Q ss_pred -----------cchhhHHHHHHHHHH--c------------------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeE
Q 004149 595 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 595 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 643 (771)
.-..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 113456667766653 1 225678999999999999999888774 67999
Q ss_pred EEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHH
Q 004149 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 644 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 723 (771)
+|+..|..- |..+ .....++.|+|+|+.+. . --....
T Consensus 255 ~I~LD~W~~------------------------------Pl~~-----------~~~~~i~~P~L~InSe~-f-~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWMF------------------------------PLGD-----------EIYSKIPQPLLFINSES-F-QWWENI 291 (379)
T ss_dssp EEEES---T------------------------------TS-G-----------GGGGG--S-EEEEEETT-T---HHHH
T ss_pred EEEeCCccc------------------------------CCCc-----------ccccCCCCCEEEEECcc-c-CChhhH
Confidence 998877421 0000 01134678999998875 2 222222
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCC------CC------------CC----hHHHHHHHHHHHHHHhC
Q 004149 724 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~----~~~~~~~i~~wl~~~l~ 771 (771)
..+.+ +...+....++.+.|..|.-. .+ .. .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 22222 333445678899999999421 11 01 12334578899999974
No 165
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.04 E-value=3.9e-09 Score=100.85 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.7
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC
Q 004149 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
.+.|+|+|+.|++.......+. ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 00000 3468999988877766663 3
Q ss_pred CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004149 237 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 237 ~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.....+.+++|||+|+. ++++.- ..+..|.++|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 34446899999999999 887741 12235667775 433333332 2
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
.......|||+|+.|+.....+ ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3455789999999999877543 1245888988743332111100 1246789
Q ss_pred ccCCCEEEEEee
Q 004149 397 LSDGCTMLLSSI 408 (771)
Q Consensus 397 s~dg~~l~~~~~ 408 (771)
||||++|+.++.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998887664
No 166
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.2e-08 Score=102.70 Aligned_cols=248 Identities=12% Similarity=0.064 Sum_probs=155.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+++....|.|.-. |+.+..-+ +.-++|.++ ......+.+.+..- ++....|+|+|+..+|.+.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEecCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEecc-----
Confidence 4588999999655 44555443 666777777 33332333333221 2358899999996666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC--CCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~--~~~~~~~~wspDg~~~~ 255 (771)
.+.-+|.||+.+.++.++...-+ .-....+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23689999999999988841111 235678889999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|++.+ +.++|+++.. .+++...--.-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99987 4558998886 5555433334467789999999998765443
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
. ..++|+||+...... ..+.. +++. .-.++|.|.+|. ++.+.+..|-.+|
T Consensus 364 -~----------~GeV~v~nl~~~~~~----------~rf~D--~G~v------~gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -G----------TGEVYVWNLRQNSCL----------HRFVD--DGSV------HGTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred -C----------CceEEEEecCCcceE----------EEEee--cCcc------ceeeeeecCCCc-eEEeccCcceEEE
Confidence 2 247999999875321 11111 1111 124678899998 4456667778888
Q ss_pred EEEE--CCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 416 ISVN--VSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d--~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
|-.+ ..+++.+++..-. ..+....|++|+..|+.+++.... .+.++.+++.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kn--alrLVHvPS~ 469 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKN--ALRLVHVPSC 469 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcccc--ceEEEeccce
Confidence 8654 2344555554322 245567899988766655543333 3455555544
No 167
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.02 E-value=3e-07 Score=94.67 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=74.1
Q ss_pred cceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCcc
Q 004149 320 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 320 ~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~ 396 (771)
..|.+++ ||+ .+|.+.+. .|+.+|+.+.+..... ...++... .++--|| +...+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 665 56777663 5999998765542211 11111111 1122232 2234889
Q ss_pred ccCCCEEEEEeee-------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC-EEEEEEeCCCCCCeEEEEEeccc
Q 004149 397 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 397 s~dg~~l~~~~~~-------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~-~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
++||+++|+.... .+..+++.+|..++++..-...........+++|++ .|+.+.... ..|.++|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s---~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD---KTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC---CcEEEEECcCC
Confidence 9999999885532 223589999999998765443333345578999999 555444332 23777776544
No 168
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.01 E-value=8.5e-10 Score=123.29 Aligned_cols=128 Identities=25% Similarity=0.289 Sum_probs=91.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-C-cEEEEECCC-CCCCCChhhhhcCCCCccccch
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G-~~V~~~d~r-G~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+...+|.|......++.|+||++|||++........ ....|+.. + ++|+.++|| |..|+........+++ ...
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n---~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN---YGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc---hhH
Confidence 444688887543457889999999998765444332 23444443 3 999999999 6666644322222233 337
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccc
Q 004149 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~ 652 (771)
.|+..+++|+.++ ...|+++|.|+|+|.||.++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 24799999999999999999988875 2457888998887553
No 169
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=3.9e-08 Score=104.78 Aligned_cols=252 Identities=16% Similarity=0.206 Sum_probs=140.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC-Ccc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++||||+.||...+++ -..+|+. ... ...+....++ ..+.|+.+|+.|+..+-+++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred cceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCe
Confidence 3577899999999998765544 4667732 211 2222323344 58999999999999888776
Q ss_pred CCCCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCc--cCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGK--RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~--~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+. |+......-+....+..-. ..+...+. |+.+... ..-.||+|++++|+...+. ...+..+..++|+|+|.
T Consensus 416 VRA--wDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 416 VRA--WDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGS 491 (893)
T ss_pred EEe--eeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccccC
Confidence 653 2211111101100000000 00011111 3332221 3468999999999988772 33455678889999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+-.+|... |.++|+-+ ..++.+.|. ....+..++|+|||+.|+
T Consensus 492 ~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 492 L----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred e----EEeccccce---------------EEEEEeec---------------cCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 8 888887533 34444311 334444442 223467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE------Eeccc---ccCCCCCcccccCCCCCCccccCCCEE
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV------IPVVQ---CAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~~~---~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
...-+. +|-.||...+...-...+..++ .+... ..+.+. ...+++|+||+.|
T Consensus 537 VaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~--------Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 537 VATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT--------FTTICYSADGKCI 597 (893)
T ss_pred EEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc--------eEEEEEcCCCCEE
Confidence 988763 4666765443321111111000 00000 011122 2478899999977
Q ss_pred EEEeeeCCeeEEEEEECCCCcEE
Q 004149 404 LLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+.. +....+..+++.++-+.
T Consensus 598 lAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 598 LAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred Eec---CCcccEEEEECchhhee
Confidence 643 23345777777777544
No 170
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.00 E-value=1.6e-08 Score=96.61 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=101.7
Q ss_pred ceEEEeCCCCCeEEEEecCC--C------CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 101 ASAVVPSPSGSKLLVVRNPE--N------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....|+|+|+.|++..... . +...+|.+...+.....+.+... + .+..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--~------~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--G------PIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--C------ceEEEEECcCCCEEEEEEc
Confidence 55678999999999977631 1 23456666533334444443221 1 1269999999999988743
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+.++|+++..+..+ . ......+.|||+|+
T Consensus 80 ~------------------------------------------~~~~v~lyd~~~~~i~~~---~-~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 S------------------------------------------MPAKVTLYDVKGKKIFSF---G-TQPRNTISWSPDGR 113 (194)
T ss_pred c------------------------------------------CCcccEEEcCcccEeEee---c-CCCceEEEECCCCC
Confidence 1 123677788865444444 2 23455789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+.. +..+.|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887621 23347888887 4333222222 22367899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
....... ....+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8776421 12234456666654
No 171
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.98 E-value=8.1e-09 Score=99.49 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=77.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
+....+||-+||.|++ ...|......|.+.|++++.+||+|. |.... + .-....-.+-...++.+.+.-.+
T Consensus 32 gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PGf---~~t~~---~-~~~~~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPGF---GFTPG---Y-PDQQYTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCCC---CCCCC---C-cccccChHHHHHHHHHHHHHcCC
Confidence 3456699999999987 56788888999999999999999994 33211 0 01112234555566666666556
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~ 650 (771)
+ +++.++|||.|+-.|+.++..+| ..++++++|.
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 78999999999999999999886 4577777764
No 172
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.97 E-value=1.7e-08 Score=99.95 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=132.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.-.+.|.++++||-.++ ...|......|+ ..|..|+++|.|. +|.+..... ..+....+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 44578999999996655 356777777664 5678999999998 444432111 123344677777777665432
Q ss_pred CCCCCeEEEEEcChhH-HHHHHHHHhCCCceeEEEe--cCCc-cch--------hhhhcCCCC-----Ccch-----hhh
Q 004149 612 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAA--RNPL-CNL--------ALMVGTTDI-----PDWC-----YVE 669 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~a~v~--~~p~-~~~--------~~~~~~~~~-----~~~~-----~~~ 669 (771)
-..++.++|||||| .++++.+...|+.+..+++ .+|. +.. .......+. +... +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 24578999999999 7777777788887755554 2331 110 000000000 0000 000
Q ss_pred h-------------cc--CCCCCcCCCCCC---hhhHHHHhhcCccccc--cCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004149 670 S-------------YG--SKGKDSFTESPS---VEDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 670 ~-------------~~--~~~~~~~~~~~~---~~~~~~~~~~sp~~~~--~~i~~P~Lii~G~~D~~vp~~~~~~~~~~ 729 (771)
. +. .....+....+. .+....+...+.-..+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 0 00 000000000000 0111121122222222 45568999999999999998876666666
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
+.. +++..++++||+... +...++.+.|.+|+.++.
T Consensus 279 fp~----~e~~~ld~aGHwVh~-E~P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHL-EKPEEFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeec-CCHHHHHHHHHHHhcccC
Confidence 655 899999999999874 445689999999987653
No 173
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.96 E-value=3.2e-08 Score=109.98 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=112.3
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...++.||||+++||+....... .....+||+++. ++..+.+
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l- 393 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV- 393 (591)
T ss_pred cccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee-
Confidence 36899999999999987532110 113479999997 4445677
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.+. ....+.|||||+. |+|+++.. ++.+........+||.+++ ++++.++ .
T Consensus 394 -t~g~-~~t~PsWspDG~~----lw~v~dg~---~~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~ 445 (591)
T PRK13616 394 -LEGH-SLTRPSWSLDADA----VWVVVDGN---TVVRVIRDPATGQLARTPV-----------------DASAVAS--R 445 (591)
T ss_pred -ecCC-CCCCceECCCCCc----eEEEecCc---ceEEEeccCCCceEEEEec-----------------cCchhhh--c
Confidence 4444 3789999999999 99987421 1222222224468999988 6676655 3
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCcccccccee---eecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
..+.+.+++|||||++|+|+... +|++ ..-..|. ..++.-. .+.. . .....
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~~-~l~~--------~----l~~~~ 499 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNPR-EVGP--------G----LGDTA 499 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeecccE-Eeec--------c----cCCcc
Confidence 34568999999999999999831 4666 3333333 3332111 1110 0 00113
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004149 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 392 ~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.++.|..|++ |++.. ......+|.+++++...+.
T Consensus 500 ~~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 500 VSLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 4678999998 55443 3455668999997555443
No 174
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.96 E-value=8.7e-08 Score=98.10 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=147.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004149 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..+++|+.+++... .+.+.++++.... ....+... ........|+|+++.+++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGH-----TGPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecC-----CcceeEEEECCCCCEEEEEcCCC-----eE
Confidence 34568888777542 3466666664332 11222211 13456889999998888765432 33
Q ss_pred EEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 128 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.+| ..++.......... .+.++.|+|+++.|+........ ..|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 344 22222222221111 12689999998766555423221 122221111111111222233455667
Q ss_pred CCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004149 206 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. ...|.+
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 76 33333333 789999999876654441 233346788999999987 877762 336888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 285 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+|+ ..++. ..+......+....|+|++..++..+.+ ..|+++++.+++...
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 43433 3333455578889999997765544422 358888887644321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.... ....+..+.|+++++.| ++...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRL-ASGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEE-EEecCCCeEEec
Confidence 1110 00124567899998755 444455555554
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.95 E-value=9.3e-08 Score=97.59 Aligned_cols=280 Identities=13% Similarity=0.094 Sum_probs=150.7
Q ss_pred hhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC
Q 004149 64 NLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP 142 (771)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (771)
-+.++...+.+..||...=....+- -..-.|++...+...+|||.|.+|+.++. +.|.-+++ ++-+.......+
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg----~aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRS-FRQLQPCETHQINSLQYSVTGDQILVVSG----SAQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eeeeccccceEEEEecccccccchh-hhccCcccccccceeeecCCCCeEEEEec----CcceeEEccCCceeeeeeccc
Confidence 3455667788888887543332211 11224556677899999999999998864 33555555 332222222111
Q ss_pred CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCce
Q 004149 143 QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 219 (771)
Q Consensus 143 ~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 219 (771)
.-+..-..+-| .+.+-+|.|+.+-.+..+. ....
T Consensus 256 QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s-------------------------------------------~Dgt 292 (641)
T KOG0772|consen 256 QYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS-------------------------------------------YDGT 292 (641)
T ss_pred hhhhhhhccCCceeeeeccccccCcccceEEec-------------------------------------------CCCc
Confidence 11100000000 2246779999877655432 2256
Q ss_pred EEEEEccCCc--eeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 220 LFVININSGE--VQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 220 l~v~d~~~~~--~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
|.+||+..-+ .+.+. .-.....+..-+|+|||+. |+.. |.+...++|...-
T Consensus 293 lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAag-------------c~DGSIQ~W~~~~------- 348 (641)
T KOG0772|consen 293 LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAG-------------CLDGSIQIWDKGS------- 348 (641)
T ss_pred EEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhc-------------ccCCceeeeecCC-------
Confidence 6677765432 22221 0112335667899999998 7654 4444334443210
Q ss_pred hhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcccee
Q 004149 295 SELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIV 369 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~ 369 (771)
-+..+ +.-......+.+.+||+||++|+-.+.++ .|.+||+..-+. ...-.+.
T Consensus 349 ----------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kkpL~~~tgL- 406 (641)
T KOG0772|consen 349 ----------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKKPLNVRTGL- 406 (641)
T ss_pred ----------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeeccccccchhhhcCC-
Confidence 11111 11112233588999999999998766654 488888864322 1111111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee---CCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCC
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGD 445 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d~~ 445 (771)
...|+ -...+||||.+.|+--++. .....|+.+|..+-+ +.+|......+....|-|.=+
T Consensus 407 ----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN 470 (641)
T KOG0772|consen 407 ----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN 470 (641)
T ss_pred ----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence 12233 2578899999855433321 223468888876644 334444444455567777766
Q ss_pred EEEEEEeC
Q 004149 446 NIIAVSSS 453 (771)
Q Consensus 446 ~l~~~~s~ 453 (771)
+|++.+.+
T Consensus 471 Qi~~gsgd 478 (641)
T KOG0772|consen 471 QIFAGSGD 478 (641)
T ss_pred heeeecCC
Confidence 66655544
No 176
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.94 E-value=2.4e-08 Score=107.40 Aligned_cols=211 Identities=15% Similarity=0.172 Sum_probs=122.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc-
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~- 596 (771)
++.+.|.|... ...+.| ||+++..-...+ -..-..++++|.++||.|+++|.+..+.. ...++-.+
T Consensus 201 ~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~~--------~r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDKA--------HREWGLSTY 270 (560)
T ss_pred eEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCChh--------hcCCCHHHH
Confidence 56677777531 122344 666666332211 11224578999999999999999873321 11222112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH----HHHhCCC-ceeEEEecCCccchhhh---------------
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~~~p~-~~~a~v~~~p~~~~~~~--------------- 656 (771)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|...-
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~ 348 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAA 348 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHH
Confidence 34666777777765 35678999999999999997 6777885 79998877776654210
Q ss_pred ----hcCCCCCcchhhhhccC---------CCCCcC-C-CCCC-------------------hhhHHHHhhcCcc-----
Q 004149 657 ----VGTTDIPDWCYVESYGS---------KGKDSF-T-ESPS-------------------VEDLTRFHSKSPI----- 697 (771)
Q Consensus 657 ----~~~~~~~~~~~~~~~~~---------~~~~~~-~-~~~~-------------------~~~~~~~~~~sp~----- 697 (771)
.....++.+.+...|.. .....+ . ..+. .+... ++..+.+
T Consensus 349 e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~-ly~~N~L~~pG~ 427 (560)
T TIGR01839 349 KRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD-MFKSNPLTRPDA 427 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH-HHhcCCCCCCCC
Confidence 00000110000000000 000000 0 0000 11111 2222222
Q ss_pred -------ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 698 -------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 698 -------~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
-.+.+|++|+|++.|+.|-++|++.+..+.+.+. .+++++..+ +||.
T Consensus 428 l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~g---s~~~fvl~~-gGHI 481 (560)
T TIGR01839 428 LEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLG---GKRRFVLSN-SGHI 481 (560)
T ss_pred EEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcC---CCeEEEecC-CCcc
Confidence 1367899999999999999999999988877663 358888875 5884
No 177
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=3.4e-07 Score=86.35 Aligned_cols=227 Identities=16% Similarity=0.240 Sum_probs=132.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||.|++||..+... ...+| +. ++..-+..+. +.. .+..+++||++|.+||.-+++
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~lE-GHE------nEVK~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATLE-GHE------NEVKCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeeee-ccc------cceeEEEEcCCCCEEEEeeCC---
Confidence 4588999999999999887754 56667 32 2323222221 111 122699999999999986543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg~ 252 (771)
..+|+|.++.+.. -.| .+..-.+..+.|.|.-.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 4788888775432 223 34445678899999765
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccceeecCCCCEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
|+|+.. +.....+|.-+.+ +. .-...|..+...+.+..|+|.|.+|
T Consensus 164 -----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666541 2232344444321 11 1245666677789999999999999
Q ss_pred EEEecCCCCCC-----C-CccccccceeeecCCCCCCCCccceeeEEecccccCC---CCC------cccccCCCCCCcc
Q 004149 332 VFLSAKSSVDS-----G-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DCF------PGLYSSSILSNPW 396 (771)
Q Consensus 332 ~f~~~~~~~~~-----g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~f------~g~~~~~~~~~~~ 396 (771)
+-.+.+..+.. + ++.....||.+.|.++ . ..+.+.+..+.+++.... ..+ .+.+...+.++.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~-~-IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNG-V-IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeeccc-c-eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 98888754311 0 0111234554555411 1 112222333333333221 111 1123345678889
Q ss_pred ccCCCEEEEEeeeCCeeEEEEE
Q 004149 397 LSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|..+-++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9976667777777788888765
No 178
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.91 E-value=3.2e-09 Score=110.23 Aligned_cols=134 Identities=22% Similarity=0.226 Sum_probs=91.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCCC-CCCCCh-hhhhcCC
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYRG-SLGFGE-EALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~V~~~d~rG-~~~~g~-~~~~~~~ 589 (771)
.+.|.+.| .++.|. .+.++.|+|||+|||.+..... .....-..|+++| ++|+.+|||- .-||=. +......
T Consensus 75 ~sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~ 150 (491)
T COG2272 75 GSEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTED 150 (491)
T ss_pred ccccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhccccc
Confidence 34455444 477787 3567799999999988765432 2223456788888 9999999993 323211 1001001
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCccc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~~ 652 (771)
......-+.|++.+++|+.++ ..-|+++|.|+|+|.||+.++.+++. | .+|+.+|+.||.+.
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 111113478999999999886 34699999999999999999988764 4 36777788887654
No 179
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.91 E-value=3.5e-08 Score=90.78 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=117.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC-----CCC-CChhhhhcCC-CCccccchhh---HHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG-----SLG-FGEEALQSLP-GKVGSQDVND---VLTAIDH 606 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG-----~~~-~g~~~~~~~~-~~~~~~~~~D---~~~~i~~ 606 (771)
..+||++||-+.+ ...+...+.-+.-....-++|.-+- .++ .+..|..... ...+..+.+. ....+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 3344444444444555566664211 111 1122221110 0001112222 2233444
Q ss_pred HHHc---CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCC
Q 004149 607 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 607 l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
|.++ ..++.+||++-|.|+||.++++.+..++..+.+.+..+++...... ..+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~----~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASI----GLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchh----hccCC-----------------c
Confidence 4432 3378899999999999999999999887666666665554321000 00000 0
Q ss_pred ChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004149 684 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
+. .+ .+|++..||+.|++||..-..+..+.|+..+..+++..|++.+|... .+-+..+.
T Consensus 140 ------------~~--~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~ 198 (206)
T KOG2112|consen 140 ------------PG--VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLK 198 (206)
T ss_pred ------------cc--cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHH
Confidence 00 00 57999999999999999999999999999999999999999999875 35678888
Q ss_pred HHHHHH
Q 004149 764 LWFKKY 769 (771)
Q Consensus 764 ~wl~~~ 769 (771)
.|++..
T Consensus 199 ~~~~~l 204 (206)
T KOG2112|consen 199 SWIKTL 204 (206)
T ss_pred HHHHHh
Confidence 888763
No 180
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4.1e-08 Score=95.83 Aligned_cols=209 Identities=13% Similarity=0.039 Sum_probs=122.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+....+|.|+++.+..++|++++.||--+.... ......+.|...| ..++.+|+--... -.+... .. ..
T Consensus 81 ~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~----R~~~~~-~n-~~ 153 (299)
T COG2382 81 ERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKK----RREELH-CN-EA 153 (299)
T ss_pred ceeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHH----HHHHhc-cc-HH
Confidence 355678889999889999999999994332211 2233455555544 6788888643111 011111 10 00
Q ss_pred chhhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004149 596 DVNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 596 ~~~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
....+. +.+-++.+... -+.++-+|+|.|+||.++++++.+||+.|..++..||.++.......
T Consensus 154 ~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~------------- 220 (299)
T COG2382 154 YWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ------------- 220 (299)
T ss_pred HHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc-------------
Confidence 112221 33345544432 35667899999999999999999999999999999998653211000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
+..+..+.. +-......-..-++...++.+.+. ...+++++.|+..|.+..+..|+| ||...
T Consensus 221 ----------~~~~~~~~l---~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~-- 282 (299)
T COG2382 221 ----------PQGEVAESL---KILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA-- 282 (299)
T ss_pred ----------cccchhhhh---hhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh--
Confidence 000110101 111111111222333344444455 456789999999999999999998 99653
Q ss_pred CChHHHHHHHHHHHHHHh
Q 004149 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~~~l 770 (771)
.+-..+.++|...+
T Consensus 283 ----~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 ----WWRPALAEGLQLLL 296 (299)
T ss_pred ----HhHHHHHHHHHHhh
Confidence 34445555655443
No 181
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.90 E-value=4.1e-07 Score=85.29 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=130.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+-...|+|-..-+.++...+ . ...+| ..++....+....+. -.+.|||||+++++...
T Consensus 66 svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~k----- 126 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNK----- 126 (313)
T ss_pred chhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecC-----
Confidence 355677877655554443322 2 34444 234444444432222 27899999999999643
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
...|-.+|..+-++..- -+-.......+|+-++.
T Consensus 127 ---------------------------------------dD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd----- 160 (313)
T KOG1407|consen 127 ---------------------------------------DDRITFIDARTYKIVNE--EQFKFEVNEISWNNSND----- 160 (313)
T ss_pred ---------------------------------------cccEEEEEecccceeeh--hcccceeeeeeecCCCC-----
Confidence 35667777766554443 23334566778996555
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|..+ +.+.|-++..+ .-.....|..+...+....|+|||+++|..+.+
T Consensus 161 ~Fflt~--------------GlG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 161 LFFLTN--------------GLGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred EEEEec--------------CCceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 777662 33345555442 223345566677778889999999999887765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+-+||++ +...+ ..|+. ....+..++||-||++| .+.+.+.-..|.
T Consensus 211 A-----------lvSLWD~~--ELiC~----------------R~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA- 258 (313)
T KOG1407|consen 211 A-----------LVSLWDVD--ELICE----------------RCISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA- 258 (313)
T ss_pred c-----------eeeccChh--Hhhhh----------------eeecc-ccCceEEEEeccCccee-eccCccceEEeE-
Confidence 3 23445543 22111 01110 01135678899999966 455445444454
Q ss_pred EECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004149 418 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 418 ~d~~tg~-~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~ 456 (771)
+..||. +.++.-... ....+|-|....|+|+++..+.
T Consensus 259 -~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 -EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred -ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 445664 445544333 3446778877777777766554
No 182
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6e-07 Score=86.76 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=135.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....||+||..++..++.+ .-++|.. ..+...+.+... -++ ....|......+.+.+......
T Consensus 15 ~~i~sl~fs~~G~~litss~dD--sl~LYd~-~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD--SLRLYDS-LSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC--eEEEEEc-CCCceeeEeecccccc----------cEEEEecCCceEEEccCCCCCc
Confidence 4578899999999998754432 2333332 344444444432 234 3667777777777776633222
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.+.+..+.+-.+-...+..-.....-+|-...-+.+..+..|.+||+...+.+-+. ... ...-+++.|.|
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~-~~pi~AfDp~G------ 152 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--NLS-GRPIAAFDPEG------ 152 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--ecC-CCcceeECCCC------
Confidence 122222222222222223332333333333222334445679999999877665552 211 22346889988
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecC-CCCccccceeecCCCCEEEEE
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+.-. ....|.++|+-.. +.|.- -.+. ..........||||||.|...
T Consensus 153 LifA~~~-------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 153 LIFALAN-------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred cEEEEec-------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 5555421 1114556665210 22322 2233 223346778999999999877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
.+. ..++++|.-+|..+.--... +....+| ...+|+|||+.| +..+.++...
T Consensus 206 T~~-----------s~~~~lDAf~G~~~~tfs~~---------~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~i~ 257 (311)
T KOG1446|consen 206 TNA-----------SFIYLLDAFDGTVKSTFSGY---------PNAGNLP-------LSATFTPDSKFV-LSGSDDGTIH 257 (311)
T ss_pred eCC-----------CcEEEEEccCCcEeeeEeec---------cCCCCcc-------eeEEECCCCcEE-EEecCCCcEE
Confidence 654 35888887766632211100 0011111 367899999955 5555566655
Q ss_pred EEEEECCCCcEEEecCC
Q 004149 415 IISVNVSSGELLRITPA 431 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~ 431 (771)
+| ++++|+..-.+.+
T Consensus 258 vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VW--NLETGKKVAVLRG 272 (311)
T ss_pred EE--EcCCCcEeeEecC
Confidence 55 5678876655544
No 183
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.89 E-value=9.5e-08 Score=104.72 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=149.4
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
...+....|||||+.++-.+.+. .+.+|+- +...+.+.. ...+ .++.|+|+|+.|+..+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~gH~~~v----------~~~~f~p~g~~i~Sgs~D 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLKGHSTYV----------TSVAFSPDGNLLVSGSDD 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEecCCCCce----------EEEEecCCCCEEEEecCC
Confidence 35688999999999887655443 4555532 222233321 2222 699999999888888777
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCC-ccceEEEec
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSL-SVGQVVWAP 249 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~-~~~~~~wsp 249 (771)
...+ .|+.........+..+........|.+|....+++..+..|.+||+.++.. ..+.+ .... .+..+.|||
T Consensus 268 ~tvr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 268 GTVR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP 344 (456)
T ss_pred CcEE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence 7654 566554555556666666666778999988888887889999999999983 23311 1111 468899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC---ccccceeec
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI---SSAFFPRFS 325 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~---~~~~~p~~S 325 (771)
+|+. |+... .+..|-++|+ ..+. ....+... ....++..+
T Consensus 345 ~~~~----ll~~~---------------~d~~~~~w~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 345 NGKY----LLSAS---------------LDRTLKLWDL-----------------RSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CCcE----EEEec---------------CCCeEEEEEc-----------------cCCcceeeecccCCcceeEeccccc
Confidence 9997 66654 2225666666 3232 23333222 245677779
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
++|+.|+-.+.+ ..|++||..++...+...+.. ...+....|++....+..
T Consensus 389 ~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~------------------~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 389 TGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHS------------------KAAVSDLSSHPTENLIAS 439 (456)
T ss_pred CCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCC------------------CCceeccccCCCcCeeee
Confidence 999988766655 358999988766544322220 012356678888875544
Q ss_pred Eee-eCCeeEEEEE
Q 004149 406 SSI-WGSSQVIISV 418 (771)
Q Consensus 406 ~~~-~~~~~~l~~~ 418 (771)
.+. .+....+|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 332 2344455544
No 184
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.88 E-value=6.1e-08 Score=99.18 Aligned_cols=221 Identities=16% Similarity=0.215 Sum_probs=125.3
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCCcch--H--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004149 523 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS--K--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~-P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~--~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.|++. |....+ +..|+||++|||++........ . .+..+.. ..++++.||.....- ..+...+..+
T Consensus 108 ~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 57776 654322 3459999999998764332111 1 1112223 569999999865300 0123445568
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCccchhhhhcCC-------CCCcc
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTT-------DIPDW 665 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~~~~~~~~~~-------~~~~~ 665 (771)
.++.+.+++|.+.. ..++|.|+|-|+||.+++.++... ....+.+|+++|.+++....... ...+.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 89999999999542 357899999999999999876531 12358999999999876211100 00000
Q ss_pred h---hhhhccCCCCCcCCCCCChhhHHHHhhcCccc---------cccC--CCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004149 666 C---YVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---------HISK--VKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 666 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---------~~~~--i~~P~Lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
. ....++. .+.+... .+......|.. .... -+.-++++.|+++-+. .+..++.+.+.
T Consensus 257 l~~~~~~~~~~----~y~~~~~---~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evfr--ddI~~~~~~~~ 327 (374)
T PF10340_consen 257 LSYKGLSMFGD----AYIGNND---PENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVFR--DDILEWAKKLN 327 (374)
T ss_pred cchhhHHHHHH----hhccccc---cccccccCCccCcccCCChhHHHHhccCCcEEEEECCccccH--HHHHHHHHHHh
Confidence 0 0000100 0111000 00000000100 0011 1357999999999777 78889999998
Q ss_pred hCCC-----CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 732 EKGV-----ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 732 ~~g~-----~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+. ..++.+-+++.|.-. -......+..|.+
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi~P----~~~~~~~~~~W~~ 364 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHIGP----ILNYSRDLDKWSK 364 (374)
T ss_pred hcCccccCCcceEEEecCCccccc----hhhhhcCHHHHhc
Confidence 6543 367788888888542 2233445555543
No 185
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.87 E-value=3.9e-07 Score=84.87 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=151.1
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC--CCccCCCCCC
Q 004149 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS--SDKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 200 (771)
+.+.+| ..|...+.++.+.. ....+..+||++.||-.+.... ..++.......+ ....+..-..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qhv---RlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQHV---RLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCee---EEEEccCCCCCceeEEeccCCceE
Confidence 466777 45665666654322 2368999999999988664331 122222121111 1111212223
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.+.|..|+.--+++..+..+.+||+..-...++ ......+..+...|+... |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 455666766677777889999999988777776 455567888999998765 55432 445
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|+++|+ ... ....+.+....+.+....|||++|+-.-+.. ..|+|++-+
T Consensus 147 ~irvWDl-----------------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-----------~cyvW~l~~ 198 (311)
T KOG0315|consen 147 NIRVWDL-----------------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-----------NCYVWRLLN 198 (311)
T ss_pred cEEEEEc-----------------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-----------cEEEEEccC
Confidence 8999998 333 2333444555689999999999988666552 488888866
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec-CCCCCcee
Q 004149 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSW 437 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~~~~~~~~ 437 (771)
+.... .+.++.+ |+ .....+-...+|||+|+|+ +.+.+....||..+-. =+++..+ ......-.
T Consensus 199 ~~~~s------~l~P~~k------~~-ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 199 HQTAS------ELEPVHK------FQ-AHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD 263 (311)
T ss_pred CCccc------cceEhhh------ee-cccceEEEEEECCCCcEEE-eecCCceEEEEecCCc-eeeEEEeecCCceEEe
Confidence 43311 1222221 11 1112234566899999775 4444556666655432 1333333 33333444
Q ss_pred eEEeecCCEEEEEEeC
Q 004149 438 SLLTLDGDNIIAVSSS 453 (771)
Q Consensus 438 ~~~s~d~~~l~~~~s~ 453 (771)
..||.||.+|+...+.
T Consensus 264 c~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD 279 (311)
T ss_pred eeeccCccEEEecCCC
Confidence 6899999988766554
No 186
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.87 E-value=9.5e-08 Score=90.38 Aligned_cols=162 Identities=9% Similarity=0.105 Sum_probs=107.6
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 148 (771)
.++.+++||+.++ ...+|+.... ..+...++|||.++|+--+.+. .+.+|+ -+... .+-......
T Consensus 83 wD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck-~t~~~~~~~-- 148 (315)
T KOG0279|consen 83 WDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCK-YTIHEDSHR-- 148 (315)
T ss_pred ccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeeeeeecccEE-EEEecCCCc--
Confidence 4567888888544 3344554443 6789999999999997654433 566772 23222 222111112
Q ss_pred ccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 149 VYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 149 ~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
+|+.++.|||. .-.|+-.+.++..+ .|+...-+.......+..+.....++||+.....+.+...+++||++
T Consensus 149 ----~WVscvrfsP~~~~p~Ivs~s~DktvK--vWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 149 ----EWVSCVRFSPNESNPIIVSASWDKTVK--VWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred ----CcEEEEEEcCCCCCcEEEEccCCceEE--EEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 35589999998 45555555666544 56554444444555567777788899998777788889999999999
Q ss_pred CCceeeccCCCCCCccceEEEecCCCC
Q 004149 227 SGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.++-..- .+....+.+.+|||.--+
T Consensus 223 ~~k~lys--l~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 223 EGKNLYS--LEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred CCceeEe--ccCCCeEeeEEecCCcee
Confidence 8876444 455667889999998655
No 187
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.86 E-value=6.9e-07 Score=94.34 Aligned_cols=263 Identities=15% Similarity=0.106 Sum_probs=129.0
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+||||++++. .+++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv-~~rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYV-ANRD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEE-EETT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEE-EcCC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 44679999998754 4443 2 466666 445555555554444 489999999988665332
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC------CCCccceEEEecCCCCC
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~------~~~~~~~~~wspDg~~~ 254 (771)
.+.+.++|.++.++.....+. ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 368899998887765431011 1123345566777775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
.++.-. ...+||.+|.. +.... ..............|+|||++++-
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeecccccccccccCcccceeee
Confidence 555432 23489999972 21211 111122234556799999998765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccc---ee------eE----EecccccCCCCCc---------c------
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK---IV------DV----IPVVQCAEGDCFP---------G------ 385 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~------~~----~~~~~~~~~~~f~---------g------ 385 (771)
..+.. ..|-++|.++++...+... .. -+ -.+|.......|. .
T Consensus 189 a~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 189 AANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp EEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred ccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 54332 3455555554433211000 00 00 0000000000000 0
Q ss_pred ------cccC-CCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEE-EecCCCC-CceeeEEeecCCEEEEEEeCCC
Q 004149 386 ------LYSS-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 386 ------~~~~-~~~~~~~s~dg~~l~~~~~-~~~~~~l~~~d~~tg~~~-~l~~~~~-~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
+-.. ..-.+.-+||+++|++... ......|..+|.++.++. .+....+ ......|++||++++++.-..+
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 0000 1123445999999988722 233567999999887654 3332222 2456789999999999887665
Q ss_pred CCCeEEEEEecc
Q 004149 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
. .|.++|..+
T Consensus 339 ~--~i~v~D~~T 348 (369)
T PF02239_consen 339 G--AIVVYDAKT 348 (369)
T ss_dssp T--EEEEEETTT
T ss_pred C--EEEEEECCC
Confidence 5 788887543
No 188
>PTZ00421 coronin; Provisional
Probab=98.86 E-value=4.2e-07 Score=99.42 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=103.3
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|++.. +++++. .+..|.++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-- 155 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-- 155 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC--
Confidence 567788876542 2233 233446788999999866 655541 2336888887
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.+++ ...+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 156 ---------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~t---- 205 (493)
T PTZ00421 156 ---------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSS---- 205 (493)
T ss_pred ---------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEE----
Confidence 4444 34555566678999999999988776654 3588999877553110
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc--EEEecCCC-CCceeeEEeecC
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE--LLRITPAE-SNFSWSLLTLDG 444 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l~~~d~~tg~--~~~l~~~~-~~~~~~~~s~d~ 444 (771)
+.... . .......|++++..|+..... .....+..+|+.+.. ...+.... .....+.|++++
T Consensus 206 ------l~~H~-~-------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 206 ------VEAHA-S-------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred ------EecCC-C-------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 00000 0 011245688888766543321 122345555665432 22222111 223445678888
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccc
Q 004149 445 DNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 445 ~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+.|+....+. ..|.+.++.++
T Consensus 272 ~~L~lggkgD---g~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKGE---GNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeCC---CeEEEEEeeCC
Confidence 8776654322 34666666543
No 189
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.85 E-value=3.9e-08 Score=102.59 Aligned_cols=230 Identities=18% Similarity=0.243 Sum_probs=143.1
Q ss_pred CCCcEEEEEcCCCCCCCCC----cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------CccccchhhHHH
Q 004149 535 SCDPLIVVLHGGPHSVSLS----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~----~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~--------~~~~~~~~D~~~ 602 (771)
+++|+|++.||--.+.... .-...+-.|+++||.|.+-|.|| ..+++.-....+. .+-+-...|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 7899999999954433211 11224556799999999999999 4454432211110 111223679999
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhh---------------------hhc
Q 004149 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL---------------------MVG 658 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~---------------------~~~ 658 (771)
.|+++.+.- ..+++..+|||.|+.....++...|+ +++..++.+|+..+.. +.+
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999998873 56899999999999999988887765 6888899999773320 000
Q ss_pred CCCC-Ccc----------hh-------------hhhccCCC-----------------------------------CCcC
Q 004149 659 TTDI-PDW----------CY-------------VESYGSKG-----------------------------------KDSF 679 (771)
Q Consensus 659 ~~~~-~~~----------~~-------------~~~~~~~~-----------------------------------~~~~ 679 (771)
.... +.. |. ....+... .+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 000 00 00000000 0000
Q ss_pred CCCCChhhHHHHhh-cCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc--CCCCCChH
Q 004149 680 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 756 (771)
Q Consensus 680 ~~~~~~~~~~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~ 756 (771)
.... ..+...|.. ..|...+.++++|+.+.+|..|.++.+++...+...+....+ ...+.+++-.|. +.......
T Consensus 308 D~G~-~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGS-KRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCc-cccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 0000 012222222 234567888999999999999999999999988887776544 333347777885 33456677
Q ss_pred HHHHHHHHHHHHH
Q 004149 757 ESFLNIGLWFKKY 769 (771)
Q Consensus 757 ~~~~~i~~wl~~~ 769 (771)
+++..|++.+++.
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999988765
No 190
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.85 E-value=9.4e-08 Score=96.02 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=127.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-----hHHHHHHH-------HCCcEEEEECCCCCC-CC-ChhhhhcCC----CCcccc
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSY-----SKSLAFLS-------SVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-----~~~~~~la-------~~G~~V~~~d~rG~~-~~-g~~~~~~~~----~~~~~~ 595 (771)
..+..+|+++|+-.++.-.... ..+++.|. -..|-||++|.-|+. |+ |.+..+..- ..+...
T Consensus 48 ~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ 127 (368)
T COG2021 48 AEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVI 127 (368)
T ss_pred ccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcc
Confidence 3567899999994432111110 01233333 334999999998754 22 222222110 122334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHHhCCCceeEEEecCCccchhh---------hhcCCCCCcc
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---------MVGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~---------~~~~~~~~~~ 665 (771)
.++|+.++-+.|++.-.| +++. ++|.||||+.++..+..+|+++..++.++....... ......-|.|
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~ 205 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDW 205 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCc
Confidence 578999888888777444 4555 999999999999999999999887776665332100 0001111122
Q ss_pred h------------------------------hhhhccCCCCCcCCCC-CChhhHHH------------------------
Q 004149 666 C------------------------------YVESYGSKGKDSFTES-PSVEDLTR------------------------ 690 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~------------------------ 690 (771)
. +.+.++......-... ......+.
T Consensus 206 n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~a 285 (368)
T COG2021 206 NGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRA 285 (368)
T ss_pred cCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 0 0111111000000000 00001111
Q ss_pred HhhcCccc-------cccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCCccCCCCCChHHHHHHH
Q 004149 691 FHSKSPIS-------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 691 ~~~~sp~~-------~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i 762 (771)
+...++.. -+.++++|+|++.=+.|.+.|+++.+++.+.|+..+. ++++ ...||.-...+.. .+...|
T Consensus 286 ld~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i 361 (368)
T COG2021 286 LDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLI 361 (368)
T ss_pred HHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHH
Confidence 11222222 2678999999999999999999999999999998765 4333 3457864433322 344667
Q ss_pred HHHHHH
Q 004149 763 GLWFKK 768 (771)
Q Consensus 763 ~~wl~~ 768 (771)
..||+.
T Consensus 362 ~~fL~~ 367 (368)
T COG2021 362 RKFLAL 367 (368)
T ss_pred HHHhhc
Confidence 777753
No 191
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=7.4e-08 Score=97.12 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=143.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|+|..++|+.. .+++++.||+.+. +..++. .+-..+........+||||++||+.... ..|+++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~----G~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNN----GHIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccC----ceEEee
Confidence 348886666653 4568899988443 333321 1111122346678889999999987443 356666
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
- ..++..........+ ..+.||.||+.|+...
T Consensus 331 hakT~eli~s~KieG~v----------~~~~fsSdsk~l~~~~------------------------------------- 363 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVV----------SDFTFSSDSKELLASG------------------------------------- 363 (514)
T ss_pred hhhhhhhhheeeeccEE----------eeEEEecCCcEEEEEc-------------------------------------
Confidence 6 444433333333333 7999999998877652
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
...++|+||+....+...---.+.....+++.|++|.+ ++..+.. |+. .||..+-.
T Consensus 364 -------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~------GiV-------NIYd~~s~ 419 (514)
T KOG2055|consen 364 -------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDS------GIV-------NIYDGNSC 419 (514)
T ss_pred -------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCc------ceE-------EEeccchh
Confidence 23689999998876554410233345567888999998 8877632 221 45544321
Q ss_pred cccchhhhhhhhcCCCCCCcceec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 289 LYKSEASELELKESSSEDLPVVNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
. .++.++++ ..--..+.+..|+||++.|+..++.. ...|.++.+.+-...
T Consensus 420 ~---------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF--- 472 (514)
T KOG2055|consen 420 F---------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF--- 472 (514)
T ss_pred h---------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee---
Confidence 1 23333333 33334688999999999999888764 234555555442210
Q ss_pred cceeeEEecccccCCCCCccc--ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 366 EKIVDVIPVVQCAEGDCFPGL--YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
..||.. ....+..++|||.|.++. ..+..++..||.+.
T Consensus 473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lA-vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLA-VGNEAGRVHLFKLH 512 (514)
T ss_pred ---------------ccCCCCCCcccceEEEEecCCCceEE-eecCCCceeeEeec
Confidence 011110 001345788999998664 45667888888764
No 192
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.85 E-value=1.8e-08 Score=101.49 Aligned_cols=119 Identities=21% Similarity=0.295 Sum_probs=85.4
Q ss_pred CceEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-
Q 004149 518 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~---~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~- 593 (771)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.+++.||.|..++++|+..-+.......+....
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4556677888865321 2478999999995544 567888999999999999999999965322222112211111
Q ss_pred ---ccchhhHHHHHHHHHHc---C----CCCCCeEEEEEcChhHHHHHHHHHhCC
Q 004149 594 ---SQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 594 ---~~~~~D~~~~i~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
.....|+...+++|.+. + .+|..+|+++|||+||+.++.++..+.
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 12367888888888876 4 378999999999999999999887554
No 193
>PTZ00421 coronin; Provisional
Probab=98.85 E-value=9.3e-07 Score=96.76 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=120.4
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcc----eEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
+.+...+||| |++.||..+.+. .-.+|.+..++.. ..+..+. +... .+..+.|+|++. .|+..+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg--tIkIWdi~~~~~~~~~~~~l~~L~-gH~~------~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG--TIMGWGIPEEGLTQNISDPIVHLQ-GHTK------KVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC--EEEEEecCCCccccccCcceEEec-CCCC------cEEEEEeCcCCCCEEEEEe-
Confidence 5688999999 888887765543 2223333222211 1111111 1111 236899999875 444432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..|.+||+.+++..... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 146 -------------------------------------------ADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGS 181 (493)
T ss_pred -------------------------------------------CCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCC
Confidence 2367999999988755441 22344688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccceeecCCCCE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGKF 330 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~p~~SpDG~~ 330 (771)
. |+..+ .+..|.++|+ .+++ ...+..+.+. .....|+|++..
T Consensus 182 l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 182 L----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred E----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 6 66655 3347888887 4443 3344433332 346789999988
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
|+...... ....+|.+||+..... .+... . . ... .....+.|++|++.|+..+..+
T Consensus 226 ivt~G~s~-------s~Dr~VklWDlr~~~~-p~~~~-----~---~---d~~-----~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 226 IITLGCSK-------SQQRQIMLWDTRKMAS-PYSTV-----D---L---DQS-----SALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEecCC-------CCCCeEEEEeCCCCCC-ceeEe-----c---c---CCC-----CceEEEEEcCCCCEEEEEEeCC
Confidence 77655332 1235688999865332 11000 0 0 000 0122346889998776654445
Q ss_pred CeeEEEEEECCCCcEEEe
Q 004149 411 SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l 428 (771)
+...+| ++.++++...
T Consensus 282 g~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 282 GNIRCF--ELMNERLTFC 297 (493)
T ss_pred CeEEEE--EeeCCceEEE
Confidence 554555 5556665443
No 194
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.84 E-value=3.7e-09 Score=119.99 Aligned_cols=132 Identities=21% Similarity=0.198 Sum_probs=85.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+ ..-+|.|.......+.|++|++|||++..... ........++..+++||.++||- .-|+-........
T Consensus 105 sEDCL--~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-- 180 (535)
T PF00135_consen 105 SEDCL--YLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-- 180 (535)
T ss_dssp ES-----EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--
T ss_pred CchHH--HHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--
Confidence 34554 44588898765555799999999998776554 33444566788999999999993 1111100000001
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCc
Q 004149 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~ 650 (771)
.+..-+.|...|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++.
T Consensus 181 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 1334488999999999986 236999999999999999999887652 3589999999984
No 195
>COG0627 Predicted esterase [General function prediction only]
Probab=98.83 E-value=3.4e-08 Score=100.32 Aligned_cols=228 Identities=17% Similarity=0.185 Sum_probs=129.7
Q ss_pred CCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHCCcEEEEECCC--CC---------CCCChhhhhc-CCC--Cccccch
Q 004149 533 DCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYR--GS---------LGFGEEALQS-LPG--KVGSQDV 597 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~G~~V~~~d~r--G~---------~~~g~~~~~~-~~~--~~~~~~~ 597 (771)
.+++.|+++++||-.... ........-+.....|++++++|-. +. -|.+-+|... ... ..+....
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~ 129 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQW 129 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccch
Confidence 457889999999944331 0111222334456788999988532 10 0011111110 000 0111233
Q ss_pred hhHH-HHHH-HHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004149 598 NDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 598 ~D~~-~~i~-~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+...+|+++........ . .+...++.
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~-~---~~~~~~g~ 205 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT-L---AMGDPWGG 205 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc-c---cccccccC
Confidence 4433 1222 3333333444 388999999999999999999999999999999998765322222 0 00000011
Q ss_pred CCCCcCCCCCChhhHHHHhhcCccccccC--------------CCCcEEEEeeCCCCccC--cHHHHHHHHHHHhCCCCE
Q 004149 674 KGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALREKGVET 737 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~P~Lii~G~~D~~vp--~~~~~~~~~~l~~~g~~~ 737 (771)
.....+.+.. ....+.+.+|...+.+ ...++++-+|..|.+.. ....+.+.+++++.|.+.
T Consensus 206 ~~~~~~~G~~---~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~ 282 (316)
T COG0627 206 KAFNAMLGPD---SDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPN 282 (316)
T ss_pred ccHHHhcCCC---ccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCc
Confidence 0000011111 0112333333333322 44678888999998874 334788999999999999
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
.+...++..|.+. .....+...+.|+.+.|
T Consensus 283 ~~~~~~~G~Hsw~---~w~~~l~~~~~~~a~~l 312 (316)
T COG0627 283 GVRDQPGGDHSWY---FWASQLADHLPWLAGAL 312 (316)
T ss_pred eeeeCCCCCcCHH---HHHHHHHHHHHHHHHHh
Confidence 9888888899764 23456778888887765
No 196
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.83 E-value=6.1e-08 Score=90.07 Aligned_cols=168 Identities=19% Similarity=0.231 Sum_probs=96.3
Q ss_pred EEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004149 540 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
|+++||...+.. ..|.... ..+... +.|-.++... .+.++....++..+.. + .+.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~-~~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--I-DEPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC----TTTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--c-CCCe
Confidence 678899665543 4565544 455554 7777666411 1244444444433332 3 3469
Q ss_pred EEEEcChhHHHHHHHH-HhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCcc
Q 004149 619 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a-~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
.|+|||.|+..++.++ ......++++++.+|....... . ..+ . ...+. ..|.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~--~~~------~-----~~~f~-------------~~p~ 110 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-P--FPP------E-----LDGFT-------------PLPR 110 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-C--CTC------G-----GCCCT-------------TSHC
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-c--hhh------h-----ccccc-------------cCcc
Confidence 9999999999999999 6677899999999997431000 0 000 0 00000 0011
Q ss_pred ccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 698 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..+..|.+++.+++|+.+|++.+..+.+.+. .+++.++++||..... ...-+..+.+.|+
T Consensus 111 ---~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~~--G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 111 ---DPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAAS--GFGPWPEGLDLLQ 170 (171)
T ss_dssp ---CHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGGG--THSS-HHHHHHHH
T ss_pred ---cccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCccccc--CCCchHHHHHHhc
Confidence 1223566999999999999999999999985 5899999999965421 1223455555544
No 197
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.82 E-value=8.5e-07 Score=95.65 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
+.+...+||||-++|+-.+++. ...+|.-.....++.-. +... +...+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y~-GH~~------PVwdV~F~P~GyYFatas~D~tAr- 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIYK-GHLA------PVWDVQFAPRGYYFATASHDQTAR- 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEec-CCCc------ceeeEEecCCceEEEecCCCceee-
Confidence 5688889999999998665543 34555222222222221 2111 225788999997777776666543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|........+.+..+..-.+-+.|-|+-....++..+..+.+||+.+|..+++- +.....+..+++||+|++ |
T Consensus 519 -LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~----L 592 (707)
T KOG0263|consen 519 -LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY----L 592 (707)
T ss_pred -eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----E
Confidence 5554444444444445444455667777666667778899999999998877773 345567899999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+-.+ ....|-++|+ .++ ....+-.+.+.+.+..||.||..||..+.+
T Consensus 593 aSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 593 ASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred eecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 8765 2336888888 454 456677777889999999999988866654
Q ss_pred CCCCCCCccccccceeeecCC
Q 004149 338 SSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++|.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4577778643
No 198
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.82 E-value=9.3e-08 Score=91.77 Aligned_cols=247 Identities=13% Similarity=0.176 Sum_probs=149.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|||||++|+-.+-++ ++++| ..|+.++-..-... ..-..-|....+++||.|.+.||..+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQAq-d~fMMmd~aVlci~FSRDsEMlAsGs------ 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQAQ-DNFMMMDDAVLCISFSRDSEMLASGS------ 282 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhhhh-cceeecccceEEEeecccHHHhhccC------
Confidence 355689999999998765544 88899 45555443221100 00011233446899999998887743
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.+..|-+|.+.+|... +.. -....++..+.||.|+..
T Consensus 283 --------------------------------------qDGkIKvWri~tG~ClRrFd-rAHtkGvt~l~FSrD~Sq--- 320 (508)
T KOG0275|consen 283 --------------------------------------QDGKIKVWRIETGQCLRRFD-RAHTKGVTCLSFSRDNSQ--- 320 (508)
T ss_pred --------------------------------------cCCcEEEEEEecchHHHHhh-hhhccCeeEEEEccCcch---
Confidence 3357888999888753 332 234457889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+-.+.. ..+.+.-+ .+|+ .+.+..+...+....|++||..|+-.+
T Consensus 321 -iLS~sfD---------------~tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 321 -ILSASFD---------------QTVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred -hhccccc---------------ceEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 8877632 13444444 4454 455666677789999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC-CEEEEEeeeCCeeE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQV 414 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~ 414 (771)
.+. .+.+|+.++++-........ .+. .+.++-..|.+ ..+++ . .....
T Consensus 368 sDg-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iV-C--Nrsnt 416 (508)
T KOG0275|consen 368 SDG-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIV-C--NRSNT 416 (508)
T ss_pred CCc-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEE-E--cCCCe
Confidence 764 37788877765421110000 000 01111122221 12222 1 12356
Q ss_pred EEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 415 IISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
+|.+++.+.-++..+.+. +++-...+||.|.++|++..+. .+|.+...++
T Consensus 417 v~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 417 VYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred EEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 888998654455554432 3555678999999999988653 4666555444
No 199
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.82 E-value=1.6e-07 Score=104.73 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=92.6
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-----------cce-----EEEecCCcccccccCCCcccceee
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-----------QLE-----KEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-----------~~~-----~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.-+.|||||++||+.++.. +..+| ... ... +....-.+. +..+..+.|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H------~~DV~Dv~W 137 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH------DSDVLDVNW 137 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecC------CCccceecc
Confidence 35688899999999999976653 77777 221 000 000000111 122368999
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC
Q 004149 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 240 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~ 240 (771)
|||+..|+..+-+ ..+.+||..+-+...+. .....
T Consensus 138 sp~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s 172 (942)
T KOG0973|consen 138 SPDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQS 172 (942)
T ss_pred CCCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-ecccc
Confidence 9999999886433 67888998776544431 33445
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC----
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---- 316 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~---- 316 (771)
-+..++|-|-|++ ++..+. +| .|-+++.. +.+-.+.++...
T Consensus 173 ~VKGvs~DP~Gky----~ASqsd-------------Dr--tikvwrt~----------------dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY----FASQSD-------------DR--TLKVWRTS----------------DWGIEKSITKPFEESP 217 (942)
T ss_pred cccceEECCccCe----eeeecC-------------Cc--eEEEEEcc----------------cceeeEeeccchhhCC
Confidence 6788999999998 887762 22 33333331 334444555432
Q ss_pred --ccccceeecCCCCEEEEEec
Q 004149 317 --SSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 317 --~~~~~p~~SpDG~~l~f~~~ 336 (771)
.....+.|||||++|+..-.
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred CcceeeecccCCCcCeecchhh
Confidence 23678999999999886543
No 200
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.81 E-value=7.8e-08 Score=95.51 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=151.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.|++|+++|-.+. ..+.-+|.+.- +.. ..|.. .+-.....+....||||.++|+--...+ ...
T Consensus 232 FS~nGkyLAsaSk-------D~Taiiw~v~~--d~~--~kl~~-tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~ 294 (519)
T KOG0293|consen 232 FSHNGKYLASASK-------DSTAIIWIVVY--DVH--FKLKK-TLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLS 294 (519)
T ss_pred EcCCCeeEeeccC-------CceEEEEEEec--Ccc--eeeee-eeecccCceEEEEECCCCCeEEecCchH-----hee
Confidence 3789998887543 23456666442 222 11110 1111225688999999999997654333 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCC-CCccccc
Q 004149 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW-KGQGDWE 205 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 205 (771)
+| +.|..++......+. ...+.+|-|||.+++..+.+...- .|+ ..+.....++..... .......
T Consensus 295 lwDv~tgd~~~~y~~~~~~--------S~~sc~W~pDg~~~V~Gs~dr~i~--~wd-lDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGF--------SVSSCAWCPDGFRFVTGSPDRTII--MWD-LDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eccCCcchhhhhcccCcCC--------CcceeEEccCCceeEecCCCCcEE--Eec-CCcchhhcccccccceeEEEEEc
Confidence 66 445544443322111 125889999999988766553211 111 111111222221111 1233344
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004149 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.|+...+.......|.+++.++...+.+ +..+..+.++..|-||+. +.+.- .+..|..+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~qei~LW 422 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQEIHLW 422 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccCeeEEe
Confidence 5544444444567888888887766656 566678899999999995 44331 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 286 RVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ +... +++-..+.. .+++ .|- -|.+.|+-.+. ..++|+|+..+|.
T Consensus 423 Dl-----------------~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSE-----------D~kvyIWhr~sgk 473 (519)
T KOG0293|consen 423 DL-----------------EENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSE-----------DSKVYIWHRISGK 473 (519)
T ss_pred ec-----------------chhhHHHHhhcccccceEEEe-ccCCCCcceEEecCC-----------CceEEEEEccCCc
Confidence 87 3211 222222111 1111 222 12233332222 3579999988887
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.....++... .+.-++|.|-....+.+++++++.+||...
T Consensus 474 ll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 6544333311 234568999999998999999999999754
No 201
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=1.1e-07 Score=89.99 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=108.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
..+..++.|.|-|+... .|..+...|.. -+.++.+.|+|.+. . .+.....|+...++.+....
T Consensus 5 ~~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~~---r--------~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRGD---R--------FGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCccc---c--------cCCcccccHHHHHHHHHHHhcc
Confidence 34445666666665543 34444444432 48899999999432 2 22223455555555555432
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEe---cCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCC-
Q 004149 612 LANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 684 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 684 (771)
..-....+++||||||.+|..+|.+... ...+..+ .+|..+ .........+-.+...+ ..+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~--~~~~i~~~~D~~~l~~l-----~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYD--RGKQIHHLDDADFLADL-----VDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCc--ccCCccCCCHHHHHHHH-----HHhCCCChH
Confidence 1233579999999999999999875311 1223222 223111 11111111111111111 11222221
Q ss_pred -hhhHHHHhhcCc-----------ccc--ccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004149 685 -VEDLTRFHSKSP-----------ISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 685 -~~~~~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.++.+.+.-.-| +.+ -..+.+|+.++.|++|..|..++...+.+..+. ..++.+++| ||.+.
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl 218 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFL 218 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceeh
Confidence 112222111111 111 135789999999999999987776666665543 589999975 89876
Q ss_pred CCCChHHHHHHHHHHH
Q 004149 751 RPQSDFESFLNIGLWF 766 (771)
Q Consensus 751 ~~~~~~~~~~~i~~wl 766 (771)
. +...++...|...+
T Consensus 219 ~-~~~~~v~~~i~~~l 233 (244)
T COG3208 219 N-QQREEVLARLEQHL 233 (244)
T ss_pred h-hhHHHHHHHHHHHh
Confidence 3 33334445554444
No 202
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.79 E-value=2.1e-07 Score=93.66 Aligned_cols=235 Identities=14% Similarity=0.095 Sum_probs=130.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-hcC---CCC-----
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSL---PGK----- 591 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~-~~~---~~~----- 591 (771)
.+..++.|+.. ..+.+|++|.+.|.+...+.......+..|.+.|+..+.+..+- ||..-. +.. ...
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 44557778754 34568999999996554333333344777888899999988654 332111 000 001
Q ss_pred -ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh-hhhc-CCCCCcchhh
Q 004149 592 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVG-TTDIPDWCYV 668 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~-~~~~-~~~~~~~~~~ 668 (771)
.+...+.++...+.|+.+++ ..+++|.|.||||.+|.++++..|..+..+-+.++..... ...+ .....+|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G---~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREG---YGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcC---CCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 12334667778889999885 3589999999999999999999988766555555432210 0001 1111233221
Q ss_pred hhc-cCCC--------------CCcC---CCCCChhhHH-HHhhcCccccccCCCC-----cEEEEeeCCCCccCcHHHH
Q 004149 669 ESY-GSKG--------------KDSF---TESPSVEDLT-RFHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 669 ~~~-~~~~--------------~~~~---~~~~~~~~~~-~~~~~sp~~~~~~i~~-----P~Lii~G~~D~~vp~~~~~ 724 (771)
+.- .... .... ......+... ....+.-..++.+..+ .+.++.+++|..||.++..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 111 0000 0000 0000011111 1111222233443333 3788899999999987766
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+.+... .+++.++++ ||.-...-+...+.+.|.+=|+
T Consensus 310 ~Lq~~WP----GsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 310 SLQEIWP----GSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred hHHHhCC----CCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 6555443 367778876 9964433334455566665443
No 203
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.79 E-value=1.7e-07 Score=95.01 Aligned_cols=100 Identities=25% Similarity=0.380 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|.|+++||.+... ..|......+.. . |.|+.+|+||. |.+. . . ..........+..+.+..
T Consensus 21 ~~~i~~~hg~~~~~--~~~~~~~~~~~~~~~~-~~~~~~d~~g~---g~s~-~-~-----~~~~~~~~~~~~~~~~~~-- 85 (282)
T COG0596 21 GPPLVLLHGFPGSS--SVWRPVFKVLPALAAR-YRVIAPDLRGH---GRSD-P-A-----GYSLSAYADDLAALLDAL-- 85 (282)
T ss_pred CCeEEEeCCCCCch--hhhHHHHHHhhccccc-eEEEEecccCC---CCCC-c-c-----cccHHHHHHHHHHHHHHh--
Confidence 45899999977653 233332222222 3 99999999984 4332 0 0 111112233333333332
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
...++.++|||+||.+++.++.++|+.++++++.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 23449999999999999999999999999999888654
No 204
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.77 E-value=9.6e-07 Score=84.59 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=170.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....|+|||..+|-. +..+.+.+| -.+.......+ .+..|.| .++.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~l-kgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWVL-KGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceeee-cccccee------EeeeeccCCCEEEEecCCceEE
Confidence 668889999999988753 444456667 23332222211 2333344 6899999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCccc--CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.|+...++...+.+.+....+... -.+.|.++ ++....++.+||....+..++ .+.......+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 455555555555444444443333 11223332 233567999999988877777 566778889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+.-.. -+.+|-++|+- ...-.-.|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55444 12255666651 2223455666777899999999999988777
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
.+. .|.+||...-...+- -+.+.+... - .++-++-..+|||++..+-+.+. ...+
T Consensus 236 Md~-----------tvrvwd~rp~~p~~R------~v~if~g~~-h----nfeknlL~cswsp~~~~i~ags~---dr~v 290 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAPSQR------CVKIFQGHI-H----NFEKNLLKCSWSPNGTKITAGSA---DRFV 290 (338)
T ss_pred ccc-----------eEEEEEecccCCCCc------eEEEeecch-h----hhhhhcceeeccCCCCccccccc---cceE
Confidence 664 466777543222100 011111100 0 01223446789999997755443 3458
Q ss_pred EEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004149 416 ISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 416 ~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~ 463 (771)
|.+|..+.... .|....+.+....|.|....|+..+++ .+||+.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd----k~i~lg 335 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD----KTIYLG 335 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC----ceeEee
Confidence 88897664443 444444566667888877766544433 335654
No 205
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.76 E-value=3.2e-08 Score=100.33 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK-SLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~-~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..|++|++||..... ...|.. ... ++...+|.|+++|+++.... .+.... . ......+++...+++|.+...+
T Consensus 35 ~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~-~-~~~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 35 SRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAV-N-NTRVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHH-H-hHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999966543 234433 333 34456899999999974211 000000 0 0011135677788888776446
Q ss_pred CCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc
Q 004149 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 652 (771)
+.+++.|+|||+||+++..++.++|++++.++++.|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 778999999999999999999999999999999988643
No 206
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.76 E-value=5.6e-08 Score=102.87 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=76.1
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHHHH-H-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|++|++||.........|.. ....|. . ..|.|+++|++|. |.+...... .......+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~---g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSR---AQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCc---CCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999664322234544 344443 2 3699999999984 332111101 1111123566777788766544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++..+|+++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 677899999999999999999998899999999988854
No 207
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.5e-06 Score=83.83 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=156.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++..-.-++|+++...|++-..++.|++|++..=..+..+.....++. .....++|+||-+.+++.-.++ .+-.+|.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g-~~l~vyk 161 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG-NKLCVYK 161 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC-CEEEEEE
Confidence 344445666776666666666777888877743222222222222222 3567899999999998876644 4444555
Q ss_pred Ee---cCCcceEEEecCC----cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004149 129 LW---SQSQLEKEFHVPQ----TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 129 ~~---~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
+. +++-.-..+..+. ..|.. ....+-..-.++.|+..+
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v-----~~i~iGiA~~~k~imsas------------------------------ 206 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQV-----DIINIGIAGNAKYIMSAS------------------------------ 206 (420)
T ss_pred eeecccCCCCcccccccccccchhccc-----ceEEEeecCCceEEEEec------------------------------
Confidence 54 1211111111110 01100 001233444444444432
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....|++|++.+.....+ -.........+-||||+. |+..+... +
T Consensus 207 --------------~dt~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTp---------------D 251 (420)
T KOG2096|consen 207 --------------LDTKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTP---------------D 251 (420)
T ss_pred --------------CCCcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCC---------------C
Confidence 236899999996655555 233445667899999998 88776322 2
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TN 359 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~ 359 (771)
+.++.+--+ +++..+ +-...-.|..+...+...+|||+.++++..+.+. ..+||-.|+. .+
T Consensus 252 VkVwE~~f~--kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 252 VKVWEPIFT--KDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAG 314 (420)
T ss_pred ceEEEEEec--cCcchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecC
Confidence 333322100 011110 1122345566677789999999999999999774 3455544431 11
Q ss_pred -CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec-C-CCCCce
Q 004149 360 -GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT-P-AESNFS 436 (771)
Q Consensus 360 -~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~-~~~~~~ 436 (771)
..+.+-.+.. +. +- -....-.+..||.|+.|.++. ++..++| ...+|+...-. . ....+.
T Consensus 315 qDpk~Lk~g~~--------pl--~a---ag~~p~RL~lsP~g~~lA~s~--gs~l~~~--~se~g~~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 315 QDPKILKEGSA--------PL--HA---AGSEPVRLELSPSGDSLAVSF--GSDLKVF--ASEDGKDYPELEDIHSTTIS 377 (420)
T ss_pred CCchHhhcCCc--------ch--hh---cCCCceEEEeCCCCcEEEeec--CCceEEE--EcccCccchhHHHhhcCcee
Confidence 1111111100 00 00 001123567899999665543 4444444 55556544322 2 123567
Q ss_pred eeEEeecCCEEEEEEe
Q 004149 437 WSLLTLDGDNIIAVSS 452 (771)
Q Consensus 437 ~~~~s~d~~~l~~~~s 452 (771)
...|+++|++++.+..
T Consensus 378 ~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 378 SISYSSDGKYIATCGD 393 (420)
T ss_pred eEEecCCCcEEeeecc
Confidence 7899999998886654
No 208
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.74 E-value=1.5e-07 Score=87.90 Aligned_cols=220 Identities=14% Similarity=0.158 Sum_probs=113.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~- 593 (771)
-.+|..+..|--.|+.. ...+.+.||+..|.+.. ...|...+.+|+..||.|+.+|.--.- |.+... ...+.
T Consensus 9 ~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftm 81 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTM 81 (294)
T ss_dssp ETTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------H
T ss_pred cCCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcch
Confidence 35688899999999854 34567899999986544 457888999999999999999965321 111100 11111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESY 671 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~--~~~~ 671 (771)
....+++..+++|+.+.+ ..+++|+-.|.-|-+|...+++ . ....+|...++.++..........++.- .+..
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 123578889999999775 5779999999999999999985 4 3777787889998754321110000000 0000
Q ss_pred cCCCCCcCCCCCC-hhh-HHHHh------hcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004149 672 GSKGKDSFTESPS-VED-LTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 672 ~~~~~~~~~~~~~-~~~-~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
.. .-.+.+... .+. ..... ..|....++.+.+|++..++++|..|...+..++...+.. ..++++.++
T Consensus 157 p~--dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~ 232 (294)
T PF02273_consen 157 PE--DLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLP 232 (294)
T ss_dssp -S--EEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEET
T ss_pred CC--cccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEec
Confidence 00 000000000 000 00011 1123345778899999999999999987776666555443 358999999
Q ss_pred CCCccCC
Q 004149 744 NDVHGIE 750 (771)
Q Consensus 744 ~~~H~~~ 750 (771)
|+.|.+.
T Consensus 233 Gs~HdL~ 239 (294)
T PF02273_consen 233 GSSHDLG 239 (294)
T ss_dssp T-SS-TT
T ss_pred Cccchhh
Confidence 9999875
No 209
>PTZ00420 coronin; Provisional
Probab=98.74 E-value=5e-06 Score=91.66 Aligned_cols=163 Identities=8% Similarity=0.045 Sum_probs=96.3
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCcc-eE----EEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+.+...+|+|+ +..||..+.. +.-.+|.+..++.. .. +..+. +..+ .+..++|+|++..++..+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~------~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILK-GHKK------KISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEee-cCCC------cEEEEEECCCCCeEEEEEe
Confidence 56889999997 6777665443 22233333222211 11 11111 1111 2368999999987765422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++.... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtIrIWDl~tg~~~~~--i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 146 -------------------------------------------FDSFVNIWDIENEKRAFQ--INMPKKLSSLKWNIKGN 180 (568)
T ss_pred -------------------------------------------CCCeEEEEECCCCcEEEE--EecCCcEEEEEECCCCC
Confidence 236789999988875433 22334678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccc-----cceeecC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA-----FFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~-----~~p~~Sp 326 (771)
. |+..+ ....|.++|+ .+++. ..+..+.+.. ....||+
T Consensus 181 l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 181 L----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred E----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 7 66554 2236888887 44433 3344443321 1224579
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|+++|+..+.+. ....+|.+||+..
T Consensus 225 d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 999888777553 1234699999875
No 210
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.73 E-value=1.8e-06 Score=89.03 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=135.8
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCc--cccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 49 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|+||+.++....- .-+.+++....+.++|+.+.. ....+...+-| .........++||||++|+ +.+.. ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~-V~n~~-p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDNKTLL-FYQFS-PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCCCEEE-EecCC-CCCE
Confidence 57899887765541 122344455677777764331 11122211100 0012344788999999985 44432 2345
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC-CCCCCCCccCCCCCCccc
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (771)
+-.++ ..++....+.++...+. |.-..-.....+.||+.+.+..+...... .-.... .......... . .
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~v--y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~r-----P-~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHI--FPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINH-----P-A 200 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEE--EEecCCccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccC-----C-c
Confidence 66666 45555555555443332 22211234456789987765544332210 000000 0000000000 0 2
Q ss_pred ccC-CcCcccCCccCceEEEEEccCCceeeccC----CC----CCCccc---eEEEecCCCCCccEEEEEeecCcceeee
Q 004149 204 WEE-DWGETYAGKRQPSLFVININSGEVQAVKG----IP----KSLSVG---QVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 204 ~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~----~~~~~~---~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
|.+ |....++. ....|+++|+.+.+...... +. ..+..+ .++++|||++ ++........
T Consensus 201 ~~~~dg~~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~~---- 271 (352)
T TIGR02658 201 YSNKSGRLVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRAK---- 271 (352)
T ss_pred eEcCCCcEEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCcc----
Confidence 333 43333333 33899999976654433310 11 122233 3899999997 6653421110
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
+.+ .....+|+.+|. .+++...-...........+||||+.++|..+.. ...|
T Consensus 272 ~th-k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s~~V 324 (352)
T TIGR02658 272 WTH-KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------DKTL 324 (352)
T ss_pred ccc-cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------CCcE
Confidence 000 012248999998 6666543323344677899999999677777654 2469
Q ss_pred eeeecCCCCC
Q 004149 352 HRIDWPTNGN 361 (771)
Q Consensus 352 ~~~d~~~~~~ 361 (771)
.++|..+++.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999888764
No 211
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.71 E-value=3e-07 Score=102.56 Aligned_cols=65 Identities=20% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCC
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~ 316 (771)
++..+.++.||||+.. +|-++. ...|.+++. .+ ...+.+-.+.
T Consensus 128 H~~DV~Dv~Wsp~~~~----lvS~s~---------------DnsViiwn~-----------------~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSL----LVSVSL---------------DNSVIIWNA-----------------KTFELLKVLRGHQ 171 (942)
T ss_pred CCCccceeccCCCccE----EEEecc---------------cceEEEEcc-----------------ccceeeeeeeccc
Confidence 4445778899999997 777762 225777775 33 3456666777
Q ss_pred ccccceeecCCCCEEEEEecCC
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+-...|.|-|++|+..+.+.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ccccceEECCccCeeeeecCCc
Confidence 7899999999999999888765
No 212
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.70 E-value=3.6e-06 Score=90.24 Aligned_cols=238 Identities=15% Similarity=0.098 Sum_probs=158.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
...+|+--|.+|||.+.+- ..--.|.-....-..+.+.+..-.....|++|+....++..+..+-+||..+|-....-
T Consensus 311 ~t~~~N~tGDWiA~g~~kl-gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF- 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKL-GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF- 388 (893)
T ss_pred eEEEecccCCEEEEcCCcc-ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-
Confidence 5889999999999976541 11112221111112223334444456779999767777788899999999988654432
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
+.....+..+.|+.+|+. |+-.+ -++.+..+|+- .....+.+|..
T Consensus 389 teHts~Vt~v~f~~~g~~----llssS---------------LDGtVRAwDlk----------------RYrNfRTft~P 433 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNV----LLSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSP 433 (893)
T ss_pred ccCCCceEEEEEEecCCE----EEEee---------------cCCeEEeeeec----------------ccceeeeecCC
Confidence 566678899999999985 55444 33467777771 23344555544
Q ss_pred Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 316 IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 316 ~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.. .....+..|.|. |++....+ ...|++|++++|+..-+.++... -+..+
T Consensus 434 ~p~QfscvavD~sGe-lV~AG~~d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l 484 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGE-LVCAGAQD---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGL 484 (893)
T ss_pred CceeeeEEEEcCCCC-EEEeeccc---------eEEEEEEEeecCeeeehhcCCCC-------------------cceee
Confidence 33 355667777788 55655443 47899999999997655544321 24567
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~ 465 (771)
+|+|+|. ++++.+|+.+.++|-+=-..++.+.+.-... +-...|.|||+.|..+..+ .+|-..+.
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld----gqItf~d~ 549 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD----GQITFFDI 549 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec----ceEEEEEh
Confidence 8999998 6688899999999987666677777754432 4457899999998776543 23444444
No 213
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.70 E-value=2.9e-07 Score=88.89 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=104.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCC--------------hhhhhc--CCCC-c---
Q 004149 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--------------EEALQS--LPGK-V--- 592 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g--------------~~~~~~--~~~~-~--- 592 (771)
.+.++|+|||-||-++. ..-|+...-.||++||+|.+++.|-....- ..|..- ...+ .
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 36789999999996655 446788888999999999999998632210 001000 0000 0
Q ss_pred -c----ccchhhHHHHHHHHHHc---------------------CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe
Q 004149 593 -G----SQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 593 -~----~~~~~D~~~~i~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~ 646 (771)
. ..-+.+|..|++-|.+- +.+|..+++|+|||+||..++...+.+. .|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 0 01245666776655442 1256788999999999999988877654 5888887
Q ss_pred cCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHH
Q 004149 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 647 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~ 726 (771)
.... ++.-. .....+.+.|+|+|.-+ |... -+....
T Consensus 271 lD~W---------------M~Pl~--------------------------~~~~~~arqP~~finv~-~fQ~--~en~~v 306 (399)
T KOG3847|consen 271 LDAW---------------MFPLD--------------------------QLQYSQARQPTLFINVE-DFQW--NENLLV 306 (399)
T ss_pred eeee---------------ecccc--------------------------hhhhhhccCCeEEEEcc-cccc--hhHHHH
Confidence 6442 21100 01234567899988833 3222 233444
Q ss_pred HHHHHhCCCCEEEEEeCCCCcc
Q 004149 727 ARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4555555555678888888884
No 214
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.70 E-value=2.2e-06 Score=93.59 Aligned_cols=264 Identities=15% Similarity=0.115 Sum_probs=147.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC---
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--- 122 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--- 122 (771)
....||||++|+|+.+... .....++.+++.++ +. + ...+.. .....+.|++||+.+.|++.....
T Consensus 128 ~~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg--~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETG--KF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETT----SSEEEEEEEETTTT--EE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeECCCCCEEEEEecCCC----CceEEEEEEECCCC--cC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3446899999999987643 45567888777443 11 1 111111 112238999999999999876532
Q ss_pred ----CCeEEEEecCCc-ce--EEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004149 123 ----SPIQFELWSQSQ-LE--KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 123 ----~~~~~~~~~~~~-~~--~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
..+++....+.. .. .+....... .++..+.+|+||++|+..+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~-------------------- 249 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGT-------------------- 249 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSS--------------------
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccc--------------------
Confidence 233444443322 22 233322211 01347889999999887655431
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCC-----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004149 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSG-----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....+|++|+..+ +.+.+ .+.........-.. |.. +++.++.+.+
T Consensus 250 --------------------~~s~v~~~d~~~~~~~~~~~~~l--~~~~~~~~~~v~~~-~~~----~yi~Tn~~a~--- 299 (414)
T PF02897_consen 250 --------------------SESEVYLLDLDDGGSPDAKPKLL--SPREDGVEYYVDHH-GDR----LYILTNDDAP--- 299 (414)
T ss_dssp --------------------SEEEEEEEECCCTTTSS-SEEEE--EESSSS-EEEEEEE-TTE----EEEEE-TT-T---
T ss_pred --------------------cCCeEEEEeccccCCCcCCcEEE--eCCCCceEEEEEcc-CCE----EEEeeCCCCC---
Confidence 1278999999875 56666 33322222222122 666 8888765443
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
+..|+.+++ +... ...+..+.....--.++..+++|++....+
T Consensus 300 --------~~~l~~~~l-----------------~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-------- 346 (414)
T PF02897_consen 300 --------NGRLVAVDL-----------------ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-------- 346 (414)
T ss_dssp --------T-EEEEEET-----------------TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET--------
T ss_pred --------CcEEEEecc-----------------cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC--------
Confidence 348999998 3322 223444433223344566788898888775
Q ss_pred ccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCc
Q 004149 347 ATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE 424 (771)
Q Consensus 347 ~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~ 424 (771)
...+|.++++. +.....+... ..+ .+......+++..++|..+.- ....+|.+|+.+++
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p-----------~~g--------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLP-----------EAG--------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESS-----------SSS--------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CccEEEEEECCCCcEEeeecCC-----------cce--------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 36789999988 3222111100 000 111223345677777766543 44579999999999
Q ss_pred EEEec
Q 004149 425 LLRIT 429 (771)
Q Consensus 425 ~~~l~ 429 (771)
.+.+.
T Consensus 408 ~~~~k 412 (414)
T PF02897_consen 408 LTLLK 412 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98775
No 215
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.68 E-value=1.6e-06 Score=83.87 Aligned_cols=210 Identities=13% Similarity=0.166 Sum_probs=112.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEE-EEECCCC---------CCCCChhh-
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSL-LIVNYRG---------SLGFGEEA- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~V-~~~d~rG---------~~~~g~~~- 584 (771)
.|...+.++..|+++.++.++|+|.++-|.... ...... ...+++.-..| +...|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf---~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~ 95 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF---NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSA 95 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh---chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCC
Confidence 467788899999988777779977777663321 111111 22233322222 2223332 11111100
Q ss_pred ---hhcC----CCCccccc--hhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchh
Q 004149 585 ---LQSL----PGKVGSQD--VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 585 ---~~~~----~~~~~~~~--~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~ 654 (771)
.... ....|..+ .+.+..-+. ++.++..++.++.+|+|||+||.+++.....+|+.|...++.+|..-+.
T Consensus 96 ~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~ 175 (264)
T COG2819 96 NAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWH 175 (264)
T ss_pred CcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhC
Confidence 0000 11111111 233333333 4444466899999999999999999999999999999999999965221
Q ss_pred hhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEe--eCCCCc------cCcHHHHHH
Q 004149 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--GAQDLR------VPVSNGLQY 726 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~--G~~D~~------vp~~~~~~~ 726 (771)
+...+....-.... + ..++.|+. |+.|.- ....++.+.
T Consensus 176 --------------------------------n~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 176 --------------------------------NEAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred --------------------------------CHHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 11111111111111 2 33444444 443432 122344555
Q ss_pred HHHHHh-CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 727 ARALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 727 ~~~l~~-~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
.+.+++ .|..+.+..+++.+|+-. ....+..++.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 556666 677888889998888643 1233445555543
No 216
>PTZ00420 coronin; Provisional
Probab=98.67 E-value=6.1e-06 Score=91.01 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccC
Q 004149 106 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 106 ~SPdG~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 183 (771)
.+.+++++|+.-... ++...++.+|+.+....+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455677777766543 2344567777444333333332 111222 68999997 6777665432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---------eeccCCCCCCccceEEEecCCCCC
Q 004149 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---------~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..|.+||+.++.. ..+ ......+..+.|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 5678888765321 122 223346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
++.++. .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236788887 44442 3333 3456889999999998876
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
...+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5543 3589999887654
No 217
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.67 E-value=1e-06 Score=84.03 Aligned_cols=268 Identities=14% Similarity=0.108 Sum_probs=149.9
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecC
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 142 (771)
+....+.+.+.+|+.-+.+ .... -++|. ..+..-+|||+|+.+|-..- +..+.+|.+. .. ....++...-
T Consensus 70 ivSaSqDGklIvWDs~Ttn--K~ha--ipl~s--~WVMtCA~sPSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l 141 (343)
T KOG0286|consen 70 IVSASQDGKLIVWDSFTTN--KVHA--IPLPS--SWVMTCAYSPSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSREL 141 (343)
T ss_pred EEeeccCCeEEEEEccccc--ceeE--EecCc--eeEEEEEECCCCCeEEecCc--CceeEEEecccccccccceeeeee
Confidence 3334456678887753332 2211 22232 56888999999999986422 2456777776 21 1111222111
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEE
Q 004149 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLF 221 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~ 221 (771)
.+..|.+ ++..|-+|+. |+..+.+.+- ..|+.........+..+..-.-.....| +...-+.+.-+..-+
T Consensus 142 ~gHtgyl------ScC~f~dD~~-ilT~SGD~TC--alWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 142 AGHTGYL------SCCRFLDDNH-ILTGSGDMTC--ALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred cCcccee------EEEEEcCCCc-eEecCCCceE--EEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 1222222 6788888775 6665544321 1344333333333334444344445555 433334455577889
Q ss_pred EEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhc
Q 004149 222 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKE 301 (771)
Q Consensus 222 v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 301 (771)
+||+..+..++.- ...+..+..+.|-|+|.. ++..+. +..+++|-+.
T Consensus 213 lWD~R~~~c~qtF-~ghesDINsv~ffP~G~a----fatGSD-------------D~tcRlyDlR--------------- 259 (343)
T KOG0286|consen 213 LWDVRSGQCVQTF-EGHESDINSVRFFPSGDA----FATGSD-------------DATCRLYDLR--------------- 259 (343)
T ss_pred eeeccCcceeEee-cccccccceEEEccCCCe----eeecCC-------------CceeEEEeec---------------
Confidence 9999888766651 334557889999999987 665552 1223455444
Q ss_pred CCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC
Q 004149 302 SSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 302 ~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
...++...... ...+.++.||..|+.| |....+ ....+||.-.++..-+..+.
T Consensus 260 ---aD~~~a~ys~~~~~~gitSv~FS~SGRlL-fagy~d----------~~c~vWDtlk~e~vg~L~GH----------- 314 (343)
T KOG0286|consen 260 ---ADQELAVYSHDSIICGITSVAFSKSGRLL-FAGYDD----------FTCNVWDTLKGERVGVLAGH----------- 314 (343)
T ss_pred ---CCcEEeeeccCcccCCceeEEEcccccEE-EeeecC----------CceeEeeccccceEEEeecc-----------
Confidence 22333333322 3358899999999955 554332 45778885444432221111
Q ss_pred CCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 380 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 380 ~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
...+.-+..+|||- .+.+.+|+...+||
T Consensus 315 --------eNRvScl~~s~DG~-av~TgSWDs~lriW 342 (343)
T KOG0286|consen 315 --------ENRVSCLGVSPDGM-AVATGSWDSTLRIW 342 (343)
T ss_pred --------CCeeEEEEECCCCc-EEEecchhHheeec
Confidence 12345667899996 55788888888777
No 218
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1e-06 Score=93.10 Aligned_cols=242 Identities=16% Similarity=0.165 Sum_probs=144.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..+.|+|+|+.||.....+ .+.+|+..+.+++........+.| ++++|. +..+...+......
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssGsr~~~I~- 283 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSGSRDGKIL- 283 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEecCCCcEE-
Confidence 5688999999999999876544 667775544444444322222233 788888 33333333222110
Q ss_pred CCccCCCCCC-CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCcc
Q 004149 179 PTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.++.-.... ......+..-.-...|++|......+..++.+++||....+ ...+ +.....+..++|+|=-+.
T Consensus 284 -~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q~~--- 357 (484)
T KOG0305|consen 284 -NHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQSG--- 357 (484)
T ss_pred -EEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccceeeeEeeeCCCccC---
Confidence 000000000 00011122222234588887777788888999999984443 3444 556667888999998887
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+.++-.. .+..|..+|. .++...+.......+.+..||+..+.|+....
T Consensus 358 -lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 -LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred -ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 77766221 2236888887 77777766677778999999999999887663
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
-. ..+|.+|...+-.......+ +...+..++|||||.+|+. ...+.+.++|
T Consensus 408 ~s---------~n~i~lw~~ps~~~~~~l~g-------------------H~~RVl~la~SPdg~~i~t-~a~DETlrfw 458 (484)
T KOG0305|consen 408 YS---------ENQITLWKYPSMKLVAELLG-------------------HTSRVLYLALSPDGETIVT-GAADETLRFW 458 (484)
T ss_pred CC---------CCcEEEEeccccceeeeecC-------------------CcceeEEEEECCCCCEEEE-ecccCcEEec
Confidence 32 34666666665222111111 1112456789999997754 4445566666
Q ss_pred EEE
Q 004149 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 543
No 219
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.65 E-value=3.9e-07 Score=95.49 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=56.3
Q ss_pred ccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHH
Q 004149 700 ISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 700 ~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~wl~~~ 769 (771)
+.+|+ +|+|.+.|+.|.++|+.++..+.+.+...+. +.+.++.+++||. +.....+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999999887643322 3456777789996 455677788999999999864
No 220
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.65 E-value=2.2e-06 Score=86.94 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=149.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++.||..||+ +...+++.+|+. .+... ..|....+.+....|+.+|.+|+-..-.+ ..+
T Consensus 243 Wn~~G~~Lat---------G~~~G~~riw~~--~G~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~-----tti 301 (524)
T KOG0273|consen 243 WNNDGTLLAT---------GSEDGEARIWNK--DGNLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTI 301 (524)
T ss_pred ecCCCCeEEE---------eecCcEEEEEec--Cchhh-----hhhhccCCceEEEEEcCCCCEEEeccCCc-----cEE
Confidence 3445555555 445667777664 33222 22333447799999999999998654332 455
Q ss_pred Eec--CCcceEEEecCCcccccc--cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 129 LWS--QSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~--~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+|+ .+...+.+.+.....-+| -.+.. -..=++||..-+|--..+.+. .....+........|
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~P~------------~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDRPV------------KTFIGHHGEVNALKW 367 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCCcc------------eeeecccCceEEEEE
Confidence 663 355555544422221111 00111 223456665544433222221 122223344445557
Q ss_pred cCCcCcccCCccCceEEEEEccC-CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 205 EEDWGETYAGKRQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.+...-+++...+..|-+|.... +....+ -.....+-.+.|||+|.. ..+......+- ....++.+-
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v-------~~n~~~~~~l~---sas~dstV~ 435 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPV-------TSNPNMNLMLA---SASFDSTVK 435 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCc-------cCCCcCCceEE---EeecCCeEE
Confidence 76655555556678888998543 344445 334446778899999874 11111111111 122345677
Q ss_pred EEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 284 AVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.+|+ ..+ ....|+.+...+.+++|||||++||+.+.+. .+++|+.++++..
T Consensus 436 lwdv-----------------~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg-----------~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 436 LWDV-----------------ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG-----------CVHIWSTKTGKLV 487 (524)
T ss_pred EEEc-----------------cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC-----------eeEeccccchhee
Confidence 7887 444 4566778888899999999999999887664 3778887776653
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+-..+. .++..++|+.+|..|....+
T Consensus 488 ~s~~~~--------------------~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 488 KSYQGT--------------------GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred EeecCC--------------------CeEEEEEEcCCCCEEEEEec
Confidence 221111 13467899999987765544
No 221
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.64 E-value=3.3e-07 Score=91.17 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=144.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+- ...| |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEti--lQaH-----Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFETI--LQAH-----DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHHH--hhhh-----cccceeEEEccCCCEEEEcCCCceEE--
Confidence 478899999999998876554 588886522111110 1112 22347999999999987754443322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
+|......-.....-+..-+....|++.-..-+.-..++.|-+||....+...+. ......+..+.|.|.- . |+
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~k-g----Li 237 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTK-G----LI 237 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCcc-c----ee
Confidence 4432111100000001112223445554344444455689999998766554431 4556678899999974 4 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+++- .+.-+-.+|. .+++ +-.|..+...+....|+|+|.+|+..+.+.
T Consensus 238 asgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 238 ASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6652 2224667776 5554 345667778899999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+.++|+.+-+..+...+. ..-+....|+|=...|+.+...++....|.+
T Consensus 287 -----------~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 287 -----------SCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -----------eEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEec
Confidence 3667777632221111100 0124567899988888887777777777766
Q ss_pred E
Q 004149 419 N 419 (771)
Q Consensus 419 d 419 (771)
+
T Consensus 337 ~ 337 (464)
T KOG0284|consen 337 G 337 (464)
T ss_pred c
Confidence 6
No 222
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.63 E-value=1.3e-06 Score=98.66 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-------hcCCC------------Cccccc
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQD 596 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~-------~~~~~------------~~~~~~ 596 (771)
..|+||++||.... ...|...+..|+++||.|+++|+||.+....... ..... ....+.
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 46899999996654 3467788889999999999999999544311100 00000 011233
Q ss_pred hhhHHHHHHHHH------Hc----CCCCCCeEEEEEcChhHHHHHHHHHh
Q 004149 597 VNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+.|+......+. +. ...+..++.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 566666666554 11 12456799999999999999999875
No 223
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.62 E-value=4e-06 Score=82.38 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=117.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCC---CcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|-|-+..-+.+.-+. =+.+| ......+.+......++.+.-+ ..+....|.+||..++-.+.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4688899999877654444332 24455 2223333222222223333221 24478999999998887643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 251 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg 251 (771)
+...|.+||+++|.-++| .+. -.++.-..|||||
T Consensus 216 -------------------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 -------------------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred -------------------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 337899999999998888 433 3355677999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. |...+ .+. .-.||... .+-...+-.-..+.+....|||+|+.|
T Consensus 251 d~----lfaAt-~da------------vfrlw~e~------------------q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----LFAAT-CDA------------VFRLWQEN------------------QSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----EEEec-ccc------------eeeeehhc------------------ccceecceeccCCceeeeeecCCCCEE
Confidence 95 44433 111 11344222 122222222234478889999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCC-ccceeeEEeccccc---CCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCA---EGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
.|..... ..||............ ..+...+..+.+.+ .... ..+-+.....++|-|-|.+|++.-
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEE
Confidence 9988654 3466655443222111 11111111111111 0000 112233456788999998887665
Q ss_pred e
Q 004149 408 I 408 (771)
Q Consensus 408 ~ 408 (771)
-
T Consensus 365 K 365 (445)
T KOG2139|consen 365 K 365 (445)
T ss_pred c
Confidence 4
No 224
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=7.9e-06 Score=77.34 Aligned_cols=150 Identities=16% Similarity=0.216 Sum_probs=92.1
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEec-C-CcceEE-EecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS-Q-SQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+.+...+|+|- |..||--+.. .-+.+|. . +..-.. +.+....... +..++|||+|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrs------VRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRS------VRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhe------eeeeeecCCCcEEEEeeccc
Confidence 46888999997 7756543322 2566663 2 222222 2222222212 37999999999999887653
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~ 253 (771)
...+|.-..++...+.-+ ..+..+..++||++|..
T Consensus 84 --------------------------------------------t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 --------------------------------------------TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred --------------------------------------------eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 233333333333322111 22345778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+..+ |...+|++.++ ++.+. -.|.++...+....|.|.-.-
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 98877 55578888873 33443 456667777889999998776
Q ss_pred EEEEecCC
Q 004149 331 LVFLSAKS 338 (771)
Q Consensus 331 l~f~~~~~ 338 (771)
|+-.+.++
T Consensus 165 L~S~SYDn 172 (312)
T KOG0645|consen 165 LFSCSYDN 172 (312)
T ss_pred eEEeccCC
Confidence 76666654
No 225
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.58 E-value=2e-07 Score=100.35 Aligned_cols=194 Identities=16% Similarity=0.094 Sum_probs=123.5
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
..+.+||||.+.|+-.+++...+ .|+.......-....+......+.|.|.+=.-.++..+.+-.+|..+...+.++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svR--LWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi- 530 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVR--LWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI- 530 (707)
T ss_pred eeeeeecccccceeeccCCccee--eeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh-
Confidence 36889999999999999887765 454333322222223333334445666532222334455556676666666666
Q ss_pred CCCCCC-ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC
Q 004149 235 GIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313 (771)
Q Consensus 235 ~~~~~~-~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt 313 (771)
..+.. .+.-+.|.|++.+ ++..+ ..+ .+..+|+. .+...+..+
T Consensus 531 -faghlsDV~cv~FHPNs~Y----~aTGS-------------sD~--tVRlWDv~----------------~G~~VRiF~ 574 (707)
T KOG0263|consen 531 -FAGHLSDVDCVSFHPNSNY----VATGS-------------SDR--TVRLWDVS----------------TGNSVRIFT 574 (707)
T ss_pred -hcccccccceEEECCcccc----cccCC-------------CCc--eEEEEEcC----------------CCcEEEEec
Confidence 34433 4556899999986 66544 112 45566651 445566677
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+.+.+.+.+|||+|++|+-.+.+ ..|.+||+.++.......+. ...+.+
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~H-------------------t~ti~S 624 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGH-------------------TGTIYS 624 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhcc-------------------cCceeE
Confidence 788889999999999999876655 35899999887653221111 124578
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEE
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+.||.||. ++++...++..++|-+
T Consensus 625 lsFS~dg~-vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 625 LSFSRDGN-VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCC-EEEecCCCCeEEEEEc
Confidence 89999998 5566666777778733
No 226
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.57 E-value=3.3e-06 Score=79.39 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 148 (771)
..+.+.+|++... +.+.-+... ++....+|||||+++++..+.+ .+-.++... +...........
T Consensus 85 ~dk~ir~wd~r~~--k~~~~i~~~-----~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 85 GDKTIRIWDIRSG--KCTARIETK-----GENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKFEV--- 150 (313)
T ss_pred CCceEEEEEeccC--cEEEEeecc-----CcceEEEEcCCCCEEEEecCcc----cEEEEEecccceeehhccccee---
Confidence 4456666666433 333222222 4577899999999999875443 243444222 111111222222
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..++|+-++. +.|....- +.-+|.-+. .-.
T Consensus 151 -------ne~~w~~~nd-~Fflt~Gl-----------------------------------------G~v~ILsyp-sLk 180 (313)
T KOG1407|consen 151 -------NEISWNNSND-LFFLTNGL-----------------------------------------GCVEILSYP-SLK 180 (313)
T ss_pred -------eeeeecCCCC-EEEEecCC-----------------------------------------ceEEEEecc-ccc
Confidence 3778886664 66653321 112333332 111
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004149 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.+..| .......--+.|+|||++ ++..+. +..+-++|++ +--=
T Consensus 181 pv~si--~AH~snCicI~f~p~Gry----fA~GsA---------------DAlvSLWD~~----------------ELiC 223 (313)
T KOG1407|consen 181 PVQSI--KAHPSNCICIEFDPDGRY----FATGSA---------------DALVSLWDVD----------------ELIC 223 (313)
T ss_pred ccccc--ccCCcceEEEEECCCCce----Eeeccc---------------cceeeccChh----------------Hhhh
Confidence 12223 222333445789999999 887662 1234455551 1122
Q ss_pred ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004149 309 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.+.++.....++..+||-||++||-.+.+. -|-+.++++|.. +.+ .+...
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh-----------~IDIA~vetGd~---------~~e---I~~~~------- 273 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDH-----------FIDIAEVETGDR---------VWE---IPCEG------- 273 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccc-----------eEEeEecccCCe---------EEE---eeccC-------
Confidence 466777788899999999999999877653 255566666553 111 11111
Q ss_pred CCCCCCccccCCCEEEEEeeeC
Q 004149 389 SSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 389 ~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
....++|.|.-..|.|+.+..
T Consensus 274 -~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 274 -PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -CceeEEecCCCceeeEEecCC
Confidence 235789999988777776643
No 227
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.2e-06 Score=90.73 Aligned_cols=271 Identities=14% Similarity=0.123 Sum_probs=163.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
-+.....|| ....+|..... .+|+-. ..+....+.+... +.+.++.|+++|++||.........
T Consensus 178 fY~nlldWs-s~n~laValg~-----~vylW~~~s~~v~~l~~~~~---------~~vtSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-----SVYLWSASSGSVTELCSFGE---------ELVTSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-----eEEEEecCCCceEEeEecCC---------CceEEEEECCCCCEEEEeecCCeEE
Confidence 345667899 44456654332 245433 4556566666521 1226999999999999987665432
Q ss_pred CCCccCCCCCCCCCCcc-CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+............ +....+...|.. .....+.+...|...|+...+...-.-....-.+....|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~--~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNS--SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccC--ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 344332222222222 444445555552 244456677888888886654211110233446778999999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-.++ +..++++|.. .......++.+...+...+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 776652 2367777751 44566788888999999999997665554432
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-~~~~~l 415 (771)
. .....|..||..++....... .+..+-++.||+..+.|+.+... .+...|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 345789999988776532211 11235688999999988766543 344567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.+.. -..+..+.....-+....+||||..++..+.
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 77653 1233344444444555677888877765553
No 228
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.55 E-value=2e-07 Score=90.81 Aligned_cols=168 Identities=19% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchH----HHHHHHHCCcEEEEECCCCCC--CCChh---------hh-hcCCCCccc-----
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSL--GFGEE---------AL-QSLPGKVGS----- 594 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~----~~~~la~~G~~V~~~d~rG~~--~~g~~---------~~-~~~~~~~~~----- 594 (771)
+++-|+++||.+.+. ..+.. +...|.+.++..+.+|-+-.. +.+-. .. ......|..
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 457799999976552 33333 333444448998888854211 00000 00 001111111
Q ss_pred cchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCccchhhhhcCCCC
Q 004149 595 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~~~~~~~~~~ 662 (771)
....++..+++++.+ ++. -.+|+|+|.||.+|+.++... ...++.+|+.+++......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555543 332 358999999999999888632 2247888888876421100
Q ss_pred CcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004149 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
........+|++|+|.++|++|.+++++.++.+++.+... .+++.+
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000123457899999999999999999999999999874 567677
Q ss_pred CCCCccCC
Q 004149 743 PNDVHGIE 750 (771)
Q Consensus 743 ~~~~H~~~ 750 (771)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 588775
No 229
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.52 E-value=2.9e-06 Score=78.83 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--C------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p------~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+....+|+.+++..| +|+|+|.|+.++.++++.. . ..|+.+|+.+++.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 344456777787776 7999999999999998721 1 13677888777642100
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
. . . -..+...+++|.|-+.|+.|.++|...+..|++.+.+. .++.. .+||.+..
T Consensus 152 -----------~--~--~------~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~H-pggH~VP~ 205 (230)
T KOG2551|consen 152 -----------K--L--D------ESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEH-PGGHIVPN 205 (230)
T ss_pred -----------h--h--h------hhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEec-CCCccCCC
Confidence 0 0 0 01234467899999999999999999999999998874 44455 45898753
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 004149 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~wl~~~l 770 (771)
.. ...+.+.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 67788899987654
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.52 E-value=7.5e-07 Score=86.16 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=90.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.-.|||+|++||..++.. +.+.+. .=+..++..+-..+ .-+.|+.|.-+|+.++..
T Consensus 13 ~c~fSp~g~yiAs~~~yr-----lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-----LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-----EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 457999999999875432 333221 11222222221222 478899999999987543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
++.+.+|++...+..--. -.+..+.....|||||+. |+..
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367888998766654331 234456778899999998 8877
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+. + . .+|-++.+ .+.....+..........+|.|||+..+..++++
T Consensus 110 se----F--------~--lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE----F--------D--LRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec----c--------e--eEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1 1 23444444 4444444444444557789999999998888775
No 231
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.52 E-value=9.6e-06 Score=96.08 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=132.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------c--eEEEecCCcccccccCCCcccceeecCC-CCeEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~ 169 (771)
+.+...+|+|||+.+|.....+ .+.+|+... . ..+.... ....+..+.|+|. ++.|+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--------SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--------ccCceeeEEeccCCCCEEEE
Confidence 4578899999999998765433 455563111 0 0011111 0112368899885 667776
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004149 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
.+.+...+ .|+............+......+.|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 66554332 344322222222233444444566765 433455666778999999988765433 2223356677885
Q ss_pred -cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeec
Q 004149 249 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFS 325 (771)
Q Consensus 249 -pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~S 325 (771)
++|.. |++.+ .+..|+++|+ .... ...+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~-----------------~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDL-----------------RNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCCccceEecCCCCCEEEEEEe
Confidence 56776 66654 2347888887 3322 34455566667888897
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|++.|+..+.+. .|.+||+..+... ... ..+.. |.| +...+..++|+++++.| +
T Consensus 671 -~~~~lvs~s~D~-----------~ikiWd~~~~~~~-~~~---~~l~~--------~~g-h~~~i~~v~~s~~~~~l-a 724 (793)
T PLN00181 671 -DSSTLVSSSTDN-----------TLKLWDLSMSISG-INE---TPLHS--------FMG-HTNVKNFVGLSVSDGYI-A 724 (793)
T ss_pred -CCCEEEEEECCC-----------EEEEEeCCCCccc-cCC---cceEE--------EcC-CCCCeeEEEEcCCCCEE-E
Confidence 788877666542 4788887643210 000 00000 111 01123456799999854 5
Q ss_pred EeeeCCeeEEEE
Q 004149 406 SSIWGSSQVIIS 417 (771)
Q Consensus 406 ~~~~~~~~~l~~ 417 (771)
+.+.++...+|.
T Consensus 725 sgs~D~~v~iw~ 736 (793)
T PLN00181 725 TGSETNEVFVYH 736 (793)
T ss_pred EEeCCCEEEEEE
Confidence 555566655654
No 232
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.50 E-value=2.8e-05 Score=78.17 Aligned_cols=236 Identities=16% Similarity=0.187 Sum_probs=135.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec-CCCCeEEEEecCCCCCCCCc
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~~ 181 (771)
.|+|.+....|.|+.-. ..+++.++..+....++..+. . .+..+. +||+ |++...
T Consensus 4 gp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 68999977777776432 357888885555555555544 2 366777 6754 444321
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC----CCCccceEEEecCCCCCccE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----~~~~~~~~~wspDg~~~~~~ 257 (771)
..+.++|+.+++++.+...+ .......+++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 34456688888877763111 234567889999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+|+........ ......||+++. . ++.+.+...........|||||+.|++....
T Consensus 99 ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 777653221100 000157999996 4 5666665555556789999999998876654
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+|+++++...... +. ....+.. ......+ ...+++..+|+ |+++.. +...|++
T Consensus 155 ~----------~~i~~~~~~~~~~~-~~-~~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 N----------GRIWRFDLDADGGE-LS-NRRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp T----------TEEEEEEEETTTCC-EE-EEEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred c----------ceeEEEeccccccc-ee-eeeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 3 56999998654321 10 0000111 1000001 23567777886 555433 3457888
Q ss_pred EECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEe
Q 004149 418 VNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s-~d~~~l~~~~s 452 (771)
++.++..+..+..+........|. ++.+.|+.+.+
T Consensus 210 ~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 898733344455443345556674 56777877654
No 233
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.49 E-value=2e-06 Score=89.22 Aligned_cols=245 Identities=15% Similarity=0.123 Sum_probs=132.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-----CChhhhh----cCC
Q 004149 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-----FGEEALQ----SLP 589 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~-----~g~~~~~----~~~ 589 (771)
..+.+.++.|+.....++.|.+++.||...... ........++..++.++..+....++ .|..... ...
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 567888888885444478999999999665532 22226677888999988887511100 0100000 000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC---ceeEEEecCCccchhhhhcCCC----C
Q 004149 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGTTD----I 662 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~a~v~~~p~~~~~~~~~~~~----~ 662 (771)
.........++...-..+ .....++....|.+.|+..+..++...+. ..+.++...+.-.......... .
T Consensus 109 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~ 185 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRL---LGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELA 185 (299)
T ss_pred hhheeeeccccccHHHHH---HhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHH
Confidence 000000011111110001 11223677888888888888877766542 2222222221111000000000 0
Q ss_pred C---cchhhhh-ccCC-CCCcCCCCCChhhHHHHhhcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004149 663 P---DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 663 ~---~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
. +...... +... ............ ...+...++...+.++. .|+|++||..|..||..++..++...+.. +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~ 262 (299)
T COG1073 186 RELIDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--P 262 (299)
T ss_pred HhhhhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--C
Confidence 0 0000000 0000 000000111111 23355666677777777 69999999999999999999999998875 6
Q ss_pred EEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHHhC
Q 004149 737 TKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~--~~~~~~i~~wl~~~l~ 771 (771)
.+.+.+++++|........ .+.+..+.+||.++|.
T Consensus 263 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 263 KKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred ceEEEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 7888899999987743333 4789999999999874
No 234
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.49 E-value=2.4e-06 Score=87.12 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=137.7
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+++...|.| .|..|+ +..-++.-.+|.+++.+...+.... ...+ ..++||+||..++..+.+
T Consensus 215 kgvsai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEE--ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5688899999 555443 3332355567777754444333322 2222 689999999999887544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|-+||+++|++..- ...+..+.-+.+.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4678899999987665 344455677889999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEe
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+++++- .+..|..+|+ .+++..+- -.+.+.+....|=++|++++..+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 877762 3347999998 66665443 23456788899999999877766
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCcc----------------------cee------eEEecccccCCCCCcccc
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLE----------------------KIV------DVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~----------------------~~~------~~~~~~~~~~~~~f~g~~ 387 (771)
.+. .+.+|++...-...... ..+ .+.+.....+...|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 24455544433221100 000 112222233344566655
Q ss_pred cCCC-CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 388 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 388 ~~~~-~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
..+. -.+.|||||++| ++.+ +...+|.+|.+|-++...
T Consensus 431 vaGys~~v~fSpDG~~l-~SGd--sdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTL-CSGD--SDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred ccCceeeEEEcCCCCeE-Eeec--CCccEEEeechhhhhhhc
Confidence 5444 367899999966 4444 444566667666554433
No 235
>PRK10115 protease 2; Provisional
Probab=98.48 E-value=3.3e-05 Score=88.70 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=119.9
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--ee
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QA 232 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~ 232 (771)
+..+.|||||++|+|..+.. +....+|+++|+.+|+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 35789999999999985543 22457999999998873 33
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce
Q 004149 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 310 (771)
+ +. . ...++|++||+. |+|+..... ..++.+||++++ .++ +.+
T Consensus 170 i---~~-~-~~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 L---DN-V-EPSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred c---cC-c-ceEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 3 11 1 245899999999 999886321 114468999998 555 334
Q ss_pred ecCCCC-cccc-ceeecCCCCEEEEEecCCCCCCCCccccccceeeec--CCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 311 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 311 ~lt~~~-~~~~-~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
.|.... .... +...+.||++++..+... ..+.+++++. .+++.+.+. ....+..
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~---- 272 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFL----------PRRKDHE---- 272 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEE----------ECCCCCE----
Confidence 444332 2122 334455999987555443 2356777774 232221111 1111110
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~ 464 (771)
| .....+..+++.++.+ ....|+.+++. .++.+.+...........+...++.|++....... +++++++
T Consensus 273 ~-------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~-~~l~~~~ 344 (686)
T PRK10115 273 Y-------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL-TSLRQIN 344 (686)
T ss_pred E-------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-EEEEEEc
Confidence 1 1112235677777653 45578888887 46666666553322333455557777777654444 3366665
Q ss_pred e
Q 004149 465 F 465 (771)
Q Consensus 465 ~ 465 (771)
.
T Consensus 345 ~ 345 (686)
T PRK10115 345 R 345 (686)
T ss_pred C
Confidence 4
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.6e-05 Score=79.95 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=141.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+..+.|||-|.+|+..-..+ +.+|-+..-.++-.. ..++ ..+.|||++++|+.-+..+...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~-- 274 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIV-- 274 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCcccc--
Confidence 66799999999998776655 567755433333222 1233 4788999999998765443211
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc--cceEEEecCCCCCccE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS--VGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~--~~~~~wspDg~~~~~~ 257 (771)
+|+ .....+|++||+.+|...+--.+..... -.-+.||.|+|.
T Consensus 275 ---------------------------~~~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 275 ---------------------------EED----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred ---------------------------Ccc----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 011 1134799999999998766521221221 124689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-+.- ..|.+++.+ +-. +..-+-....+....|||-+.-|||-..
T Consensus 320 ~Arm~~----------------~sisIyEtp-----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP-----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eEEecc----------------ceEEEEecC-----------------ceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 776541 134444321 000 0000112234778999999999999887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----- 411 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~----- 411 (771)
... +...++-++.+.++...+. . .+..+ +.-.+-|-.+|++|.+...+..
T Consensus 367 e~~------~~parvtL~evPs~~~iRt-~---nlfnV---------------sDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 367 ETN------NIPARVTLMEVPSKREIRT-K---NLFNV---------------SDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred ccc------CCcceEEEEecCccceeee-c---cceee---------------eccEEEeccCCcEEEEEEEeecccccc
Confidence 652 2234566666666554221 0 11111 1224569999999988876432
Q ss_pred ----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE-eCCCCCCeEEE
Q 004149 412 ----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS-SSPVDVPQVKY 462 (771)
Q Consensus 412 ----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~-s~~~~p~~l~~ 462 (771)
+..|++++-+.=-+..+.-.. .+-..+|.|.|+.++.+. .......++|-
T Consensus 422 g~f~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEE
Confidence 224666654332233332222 233457889998876554 33333333443
No 237
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.47 E-value=2.5e-05 Score=77.07 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=127.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+.+|+...+|.-. +++...+|.+..+...-.++-....+ .+..||.||..||...
T Consensus 65 ~svFavsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSV----------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSV----------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCce----------EEEEEccCceEEEecC-------
Confidence 5688899999766665422 22333444444333222333222222 6899999999888731
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~ 257 (771)
-...|.++...+|..+.. +. .-..+.-..|.|-+.-
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 346789999988877665 33 2234567789998774
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.+ ..+.||.+.++ +.+..+.+..+...+..=.|.||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44443 34579999883 336667777777778888999999999877765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+++++.... +.+.. .. -..-+.++.++. +++..+.++ ..+.
T Consensus 212 g-----------ti~~Wn~ktg~p~~~---------~~~~e---~~------~~~~~~~~~~~~-~~~~g~~e~--~~~~ 259 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQPLHK---------ITQAE---GL------ELPCISLNLAGS-TLTKGNSEG--VACG 259 (399)
T ss_pred c-----------eEEEEecCCCceeEE---------ecccc---cC------cCCccccccccc-eeEeccCCc--cEEE
Confidence 3 489999999865221 11111 00 012334555665 334444333 3455
Q ss_pred EECCCCcEEEecC
Q 004149 418 VNVSSGELLRITP 430 (771)
Q Consensus 418 ~d~~tg~~~~l~~ 430 (771)
++..+|++.....
T Consensus 260 ~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 260 VNNGSGKVVNCNN 272 (399)
T ss_pred EccccceEEEecC
Confidence 5666777776655
No 238
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.6e-06 Score=83.48 Aligned_cols=252 Identities=13% Similarity=0.104 Sum_probs=159.2
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcccee---ecCCccccccceEEEeCCCCCe
Q 004149 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ---WAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
+-.-+..|.+ ||||.+++-. ..+++|-+|+...+.- ...|. ...|-.-...+....||.|...
T Consensus 212 ~KSh~EcA~F----SPDgqyLvsg---------SvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARF----SPDGQYLVSG---------SVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheee----CCCCceEeec---------cccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHH
Confidence 3333444554 4589877743 2345666665433211 11110 1122222245788999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
+|.-+.+ +.-.+|.+..+.-.++.-. ...++ .+++||.|+..|+..+.+.+.+ ..-...++..+.
T Consensus 278 lAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR--iHGlKSGK~LKE 343 (508)
T KOG0275|consen 278 LASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR--IHGLKSGKCLKE 343 (508)
T ss_pred hhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE--EeccccchhHHH
Confidence 9865543 3344555544433333321 13344 5999999999999887765433 111233444556
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...+.++.....|.+|+...+....+..+-+|+..+++.... .+.+.+..+..+..-|.+.. -..+.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe----h~iVC-------- 411 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE----HFIVC-------- 411 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc----eEEEE--------
Confidence 667889999999999988888888889999999988765332 22345566777777776654 33333
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC---CccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
|+...||++++ .+.-.+.++.+ .+..-....||-|.+|+-+..+.
T Consensus 412 ------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~--------- 459 (508)
T KOG0275|consen 412 ------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG--------- 459 (508)
T ss_pred ------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---------
Confidence 45668999998 55556666654 33456788999999998777653
Q ss_pred cccceeeecCCCCC
Q 004149 348 TDSLHRIDWPTNGN 361 (771)
Q Consensus 348 ~~~l~~~d~~~~~~ 361 (771)
.||-+...+|+.
T Consensus 460 --vlYCF~~~sG~L 471 (508)
T KOG0275|consen 460 --VLYCFSVLSGKL 471 (508)
T ss_pred --EEEEEEeecCce
Confidence 588888877775
No 239
>PRK04940 hypothetical protein; Provisional
Probab=98.45 E-value=5.5e-06 Score=75.98 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=74.5
Q ss_pred CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcC
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
++++|+|.|+||+.|.+++.++. + .+|+++|.+....... ...+. ... +. .........+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 4567788775422110 00110 000 11 011122222220
Q ss_pred ccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 696 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+-.-..+++..+.|++.+..++.+.+... .+..+.+|++|.|... .+.+..|++|+.
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 11234699999999999888777665432 2577999999998743 457888999885
No 240
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.45 E-value=6.6e-05 Score=74.71 Aligned_cols=236 Identities=17% Similarity=0.166 Sum_probs=132.3
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..-.++.+| ++.-++|.+..+ ...+.++ .+++..+.+..+.+.| -++--.|||||++| |+.|...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~L-ytTEnd~-- 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLL-YTTENDY-- 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEE-EEecccc--
Confidence 345678899 555555555433 3455555 5666665555544443 22467899999866 5444331
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..++..|-|||+.. ..+++. -....+.+-++.|.|||+.
T Consensus 73 ------------------------------------~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 73 ------------------------------------ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred ------------------------------------CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 11568899999983 344442 1233456778999999987
Q ss_pred EEEEEee--cCc----ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccceeec
Q 004149 257 YLVFVGW--SSE----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRFS 325 (771)
Q Consensus 257 ~l~~~~~--~~~----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--lt~--~~~~~~~p~~S 325 (771)
|+..-- ... ..++.+ ... ...|.++|. .+|++ .+ |.. ...+++..+++
T Consensus 113 -LvVANGGI~Thpd~GR~kLNl--~tM-~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 113 -LVVANGGIETHPDSGRAKLNL--DTM-QPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred -EEEEcCCCccCcccCceecCh--hhc-CCceEEEec-----------------CCCceeeeeecCccccccceeeEEec
Confidence 776421 111 112222 122 235777876 56653 33 533 44579999999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccc-eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSL-HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
+||.- +|..+-. |......-| .+. ..++..++.....+. ...+. ..+.++++++||..++
T Consensus 172 ~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~----~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 172 GDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLN----GYIGSIAADRDGRLIA 232 (305)
T ss_pred CCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhC----CceEEEEEeCCCCEEE
Confidence 99984 4444433 322222222 222 223322211111000 00111 1345789999999888
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 405 LSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+++...+...+| |..+|++.....
T Consensus 233 ~tsPrGg~~~~~--d~~tg~~~~~~~ 256 (305)
T PF07433_consen 233 VTSPRGGRVAVW--DAATGRLLGSVP 256 (305)
T ss_pred EECCCCCEEEEE--ECCCCCEeeccc
Confidence 888777766666 888998876654
No 241
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=7.1e-05 Score=77.83 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=157.8
Q ss_pred CCCCcceEE-EEEeechhhcc-cceeEEEEEEeecCCCCccceeecCCcc--cc-ccceEEEeCCCCCeEEEEecCCCCC
Q 004149 49 GNGNGTQAM-FSISQPNLLAN-KRKKFMLSTVISKENENSVTFQWAPFPV--EM-TGASAVVPSPSGSKLLVVRNPENES 123 (771)
Q Consensus 49 ~s~dg~~v~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~-~~~~~~~~SPdG~~la~~~~~~~~~ 123 (771)
.||.-++|+ |+........+ .....+.+||+.++-- .+ .|+. +. .--....||-|++++|=+..+.
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-kr-----sF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-KR-----SFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccch-hc-----ceeccCCCccccceEEeccCCceeEEeccce---
Confidence 355666544 44332222211 1234677778855421 11 1221 00 1123478999999998664321
Q ss_pred CeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004149 124 PIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
+.+..... -.+.+. +..+. .+..++|||-+..|||.......
T Consensus 328 ---isIyEtps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ---ISIYETPS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred ---EEEEecCc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 22221111 112221 11111 12589999999999997654321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee-eeeeeeccCCce
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 281 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~ 281 (771)
....+-++.+.++...+.. --.+.......|-..|++ |.|-..+....+ .|.. .+-+
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f----~n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQF----SNLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceE----eeEE
Confidence 1134455555555443331 112335567899999998 988776554333 2222 1236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+.++= ..-.+.. .+-...+...+|-|.|.+++.++.... ...+-.+...+...
T Consensus 429 Ifrire-----------------KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNIK 482 (698)
T ss_pred EEEeec-----------------cCCCcee-eecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCCC
Confidence 666652 1111111 122335678899999999999987652 23344444443211
Q ss_pred C-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeeE
Q 004149 362 F-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSL 439 (771)
Q Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~ 439 (771)
+ .+.... +. .....+.|||.|+.+++.+-......|+-+|++-...+.+... .......-
T Consensus 483 ~~~lVk~~---------------dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~ve 544 (698)
T KOG2314|consen 483 KPSLVKEL---------------DK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVE 544 (698)
T ss_pred chhhhhhh---------------cc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccce
Confidence 1 111110 00 1234678999999888877665566788888764444444322 22345567
Q ss_pred EeecCCEEEEEEeCC
Q 004149 440 LTLDGDNIIAVSSSP 454 (771)
Q Consensus 440 ~s~d~~~l~~~~s~~ 454 (771)
|+|.|++++...+..
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 999999998877655
No 242
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.43 E-value=5.2e-07 Score=88.08 Aligned_cols=178 Identities=16% Similarity=0.234 Sum_probs=108.5
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004149 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
..-||.++...++.-.+........+||++-|..+-... ..+.-=++.||.|+.++++| ++.+.. .+ ..
T Consensus 220 ks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPG---FagSTG--~P--~p 288 (517)
T KOG1553|consen 220 KSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPG---FAGSTG--LP--YP 288 (517)
T ss_pred eecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCC---ccccCC--CC--Cc
Confidence 344667777777754433333445778888884432111 12222357899999999998 433321 11 22
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhcc
Q 004149 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~ 672 (771)
.++...+.+.+++.++.-....+.|.++|+|.||+.++++|..+|+ ++++|+-+.+-|+....-.. +|. |.-.
T Consensus 289 ~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~r-MP~~~~gi---- 362 (517)
T KOG1553|consen 289 VNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFR-MPTFFSGI---- 362 (517)
T ss_pred ccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhh-chHHHHHH----
Confidence 3345566677888888766778999999999999999999999997 89999888776654332111 111 1000
Q ss_pred CCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccC
Q 004149 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp 719 (771)
-..........+-...+.+.+.|+++|--.+|+++.
T Consensus 363 -----------V~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 363 -----------VEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred -----------HHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 001112222223334455667888888888887764
No 243
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.40 E-value=5e-06 Score=84.81 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=122.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....||++|+.++-.+-+. .+.+|+ .|+.........-. .++.|.||+..++++..
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~---- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGG---- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEec----
Confidence 5588899999999998776654 677774 34333333332222 58999999987877632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
.+..|..||+.++++.+- .... ..+....|-++|++
T Consensus 320 ---------------------------------------sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 320 ---------------------------------------SDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ---------------------------------------CCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 346788888888876544 2222 24566778888887
Q ss_pred cEEEEEeecCccee----------------------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004149 256 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 256 ~~l~~~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
.+-++....-+- .++..|.+-...|+++.+.. .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 555543222100 11111112222333332200 00000
Q ss_pred cceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 308 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 308 ~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..++...+ .+......|||||++|+..+.+ ..++.|||++-+........+
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCC----------------
Confidence 11111111 3345678999999999876655 359999998865432221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
.-...+.|.|-....+++..++|...+|
T Consensus 475 ---~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 475 ---QPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ---cceEEEEecCCCcceeEecccCceeEec
Confidence 1233567888888788888888877766
No 244
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.38 E-value=9.5e-05 Score=73.11 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=142.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....||-||.+||..--. +.-.+|.+..++....+...-.++ .-+.|.|-+..|++.+++...
T Consensus 107 DSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~e~~di----------eWl~WHp~a~illAG~~DGsv-- 172 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQEVEDI----------EWLKWHPRAHILLAGSTDGSV-- 172 (399)
T ss_pred CceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeecccCce----------EEEEecccccEEEeecCCCcE--
Confidence 568889999999999853211 222233333333333332122222 588999998888877766532
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..|.......-+....+.....-..|.||+...+.+..+..|.+||+.++.+.............-..++.+|. +
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-----~ 247 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-----T 247 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-----e
Confidence 12222222222233334444456678999777778888899999999999865442111111122234444554 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---------CCCccccceeecCCCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---------ESISSAFFPRFSPDGK 329 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---------~~~~~~~~p~~SpDG~ 329 (771)
++..+... ..+.+.. .+|+..... .......++.+.|-..
T Consensus 248 ~~~g~~e~--------------~~~~~~~-----------------~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 248 LTKGNSEG--------------VACGVNN-----------------GSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred eEeccCCc--------------cEEEEcc-----------------ccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 44443222 2333332 222221111 1122233444443333
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.|=...- | .-...|.+||++....+.+...... +..+.|.+ ..+|+ ++..
T Consensus 297 ~lpL~A~------G--~vdG~i~iyD~a~~~~R~~c~he~~--------------------V~~l~w~~-t~~l~-t~c~ 346 (399)
T KOG0296|consen 297 KLPLAAC------G--SVDGTIAIYDLAASTLRHICEHEDG--------------------VTKLKWLN-TDYLL-TACA 346 (399)
T ss_pred ccchhhc------c--cccceEEEEecccchhheeccCCCc--------------------eEEEEEcC-cchhe-eecc
Confidence 2211111 1 1134688999988777655444433 33456876 44454 4443
Q ss_pred CCeeEEEEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEE
Q 004149 410 GSSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
++ .++.+|..+|++...- .....+...+++++++.++.++
T Consensus 347 ~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 347 NG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred Cc--eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 44 4566688899877543 3333455567788887766554
No 245
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.35 E-value=4.4e-06 Score=83.38 Aligned_cols=240 Identities=10% Similarity=0.092 Sum_probs=150.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....||++|.+++-... ...+.+| ..-+..+.++.... +.+.+++|||...+++..+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~-----gG~iKyWqpnmnnVk~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDK-----GGMIKYWQPNMNNVKIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCC-----CceEEecccchhhhHHhhHhhh--------hhhheeccCCCCceeEEecCCCeEE
Confidence 34788999999999964322 2377788 33333333332111 1237999999888888877776554
Q ss_pred CCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+........... ...|. ....|-|.-|...++.+.+-+-+||..+|....-. ......+..+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~--- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW--- 278 (464)
T ss_pred --EEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe---
Confidence 44433333333332 23333 46667777788888888899999999988754431 344557889999999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ +++.+-++|+. .-.++.....+...+.+..|+|--.-|.....
T Consensus 279 -Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 279 -LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeecc
Confidence 88776 44567777861 12345566667777899999998777654432
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
- ..+|..+.+...+....... .+...+-+++|.|=|. |+.+.+.+.....|
T Consensus 327 ~----------Dgsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 327 S----------DGSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFW 377 (464)
T ss_pred C----------CCceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeee
Confidence 2 23466666553332211111 1222456788999996 66776666666666
Q ss_pred EEE
Q 004149 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.-+
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 543
No 246
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00043 Score=69.85 Aligned_cols=264 Identities=15% Similarity=0.145 Sum_probs=141.7
Q ss_pred cceEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 100 GASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
-......||||+.++.... ..+.+..++.+|+.... ...+.++.....-+. -.-..+.+|+|||++++-.-
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~--~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV--PYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS----GGGEEE-TTSSEEEEEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec--ccccceEEccCCcEEEEEcc
Confidence 3556888999999975432 22366789999965544 444455543110000 01246789999998876422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+-|+|++.+++..- ++-..+..-+-+.++
T Consensus 115 T------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~-- 148 (342)
T PF06433_consen 115 T------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNR-- 148 (342)
T ss_dssp S------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETT--
T ss_pred C------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEEecCCC--
Confidence 2 237899999999987655 333333222222222
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecC---C--CCccccceeecC
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT---E--SISSAFFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt---~--~~~~~~~p~~Sp 326 (771)
+ |.+ .|.+ +.+..+.++ +.|+.. +.+ . ...-...|.++.
T Consensus 149 ~------F~~-----------lC~D--Gsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 149 G------FSM-----------LCGD--GSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp E------EEE-----------EETT--SCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred c------eEE-----------EecC--CceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceEC
Confidence 1 211 2533 356666663 233322 111 1 122345677888
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCccccCCCEEE
Q 004149 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
++.+++|.+... .+|..|+.+.+.+.. ....++... .++-.|| +....++.+...+||
T Consensus 194 ~~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 194 DGGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLY 253 (342)
T ss_dssp TTTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEE
T ss_pred CCCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEE
Confidence 888899998763 588888877653211 111111111 1233444 345577888777787
Q ss_pred EEeeeC-------CeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 405 LSSIWG-------SSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 405 ~~~~~~-------~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
+....+ ....||.+|+++++.. ++.... .......+.|.+-+++..+.. -..|+++|..+++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETT--TTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCc
Confidence 765432 3457999999998755 443222 223456777777666655442 2568888876554
No 247
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.33 E-value=1.6e-05 Score=83.01 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=64.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH----HH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID----HV 607 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~----~l 607 (771)
..++|.||.-.-.++......|. ..+....+.|..|+.+-+.-.+. ..+.++|+..+.. .+
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 35678777654322322222332 23444446699988887654322 2335777776544 33
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEe-cCCcc
Q 004149 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~-~~p~~ 651 (771)
.+.. -+..|..|+|.|.||+.++++|+.+|+++.-+|+ .+|+.
T Consensus 133 ~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 3332 2344899999999999999999999998876654 44543
No 248
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.33 E-value=4e-05 Score=72.52 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.7
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..+++..+..+.+||+++|+.... ......+..+.|+++|.. ++++.... . ...+.|..+|+..
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----m------g~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----M------GYTCFVSVFDIRD 129 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----c------CcceEEEEEEccC
Confidence 455677789999999999998777 566667888999999998 88876321 1 2334677777621
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
. .+...+.+ ...+......+....|+|-|+.|+....+ ..|-.||+.+|....-...
T Consensus 130 ~----------~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~-----------G~is~~da~~g~~~v~s~~- 187 (327)
T KOG0643|consen 130 D----------SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED-----------GSISIYDARTGKELVDSDE- 187 (327)
T ss_pred C----------hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----------CcEEEEEcccCceeeechh-
Confidence 0 00012333 44555555678899999999999865544 3588999888754211111
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEE
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~ 448 (771)
++...+..+++|+|.. .+++++.+....|+ |..+-++.+--.....+...+++|-.+.++
T Consensus 188 -----------------~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~--D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 188 -----------------EHSSKINDLQFSRDRT-YFITGSKDTTAKLV--DVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred -----------------hhccccccccccCCcc-eEEecccCccceee--eccceeeEEEeeecccccceecccccceEE
Confidence 1223567889999986 55666666666666 544544443322223345556777655555
Q ss_pred EE
Q 004149 449 AV 450 (771)
Q Consensus 449 ~~ 450 (771)
+.
T Consensus 248 lg 249 (327)
T KOG0643|consen 248 LG 249 (327)
T ss_pred ec
Confidence 43
No 249
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=2.5e-05 Score=85.98 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=138.1
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004149 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
+..++|.|||+.|.....++..+ .|......+.+...+. .-.....+..+-+..+++..+..+.++....++..-+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir--~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIR--KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceE--EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcccee
Confidence 35889999999776655444333 2221111111111110 00001112222234556667788888888877765331
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+...+++-+|+. +++.+. +..|-+++++ ++...+.+..
T Consensus 93 -~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~----------------D~s~~~~lrg 136 (933)
T KOG1274|consen 93 -ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD----------------DSSQEKVLRG 136 (933)
T ss_pred -eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc----------------ccchheeecc
Confidence 344556778899999999 998872 2357777763 5566777888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+....|+|.|..||..+-+. .|.+||++++.......+.. ++..|- -......+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---------k~n~~~--~s~i~~~~ 194 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---------KDNEFI--LSRICTRL 194 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---------cccccc--ccceeeee
Confidence 888999999999999999888653 58899998766533222111 011111 11223578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEE
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~---~~~~~~~~s~d~~~l~~~ 450 (771)
+|+|+|..+++... ++...+| +.++.+...-.... ..+....|||.|++|++.
T Consensus 195 aW~Pk~g~la~~~~-d~~Vkvy--~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPV-DNTVKVY--SRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eecCCCCeEEeecc-CCeEEEE--ccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence 99999887776653 3334444 55565544332221 236678899998887654
No 250
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.32 E-value=0.00011 Score=71.45 Aligned_cols=60 Identities=3% Similarity=-0.116 Sum_probs=38.9
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
+.+-++||+|+.++ .+.+..-.+.||.+|+...++..+..-...+....|.|.--.|+..
T Consensus 320 g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVC 379 (447)
T ss_pred ccceeeecCCceEE-eeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEE
Confidence 46678999998644 5555556678999999877766554433334455666655444433
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.31 E-value=2.6e-05 Score=82.43 Aligned_cols=195 Identities=15% Similarity=0.209 Sum_probs=108.3
Q ss_pred EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 113 LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 7 l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r------------------ 56 (369)
T PF02239_consen 7 LFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR------------------ 56 (369)
T ss_dssp EEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET------------------
T ss_pred EEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC------------------
Confidence 44554442 33566676 4444445554433444 467899999986554 22
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...|.++|+.++++..- ........++++||||++ ++...+
T Consensus 57 -------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~-------- 97 (369)
T PF02239_consen 57 -------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY-------- 97 (369)
T ss_dssp -------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE--------
T ss_pred -------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec--------
Confidence 25799999999886544 344456778999999996 554432
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEEEEEecCCCCCCC
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
.+..+.++|. ++.+. +.+... ...+....-||+...+++.-.+.
T Consensus 98 ------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~----- 149 (369)
T PF02239_consen 98 ------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT----- 149 (369)
T ss_dssp ------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT-----
T ss_pred ------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC-----
Confidence 2237888886 44443 222211 11234556688888776666553
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004149 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
.+|+++|......... ..+. -+.|+ ....|+||+++++......+ .+-.+|.+++
T Consensus 150 -----~~I~vVdy~d~~~~~~--------~~i~---~g~~~-------~D~~~dpdgry~~va~~~sn--~i~viD~~~~ 204 (369)
T PF02239_consen 150 -----GEIWVVDYSDPKNLKV--------TTIK---VGRFP-------HDGGFDPDGRYFLVAANGSN--KIAVIDTKTG 204 (369)
T ss_dssp -----TEEEEEETTTSSCEEE--------EEEE-----TTE-------EEEEE-TTSSEEEEEEGGGT--EEEEEETTTT
T ss_pred -----CeEEEEEeccccccce--------eeec---ccccc-------cccccCcccceeeecccccc--eeEEEeeccc
Confidence 4799998765432111 0010 12222 35579999998876554333 7778899888
Q ss_pred cEEEec
Q 004149 424 ELLRIT 429 (771)
Q Consensus 424 ~~~~l~ 429 (771)
++..+.
T Consensus 205 k~v~~i 210 (369)
T PF02239_consen 205 KLVALI 210 (369)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 877654
No 252
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.31 E-value=1.2e-06 Score=69.52 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
|.+|.+..+.|+. . .+.+|+++||.... ...|...++.|+++||.|+++|+||.+.
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rGhG~ 56 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRGHGR 56 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 5678888998873 2 67899999996544 3368889999999999999999999443
No 253
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.30 E-value=1.1e-05 Score=81.22 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchh----hHHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN----DVLTAIDHVID 609 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~----D~~~~i~~l~~ 609 (771)
.++||++.|.|+. ...|...+..|.+ ..|.|+++.+.|........... .+......+ -..+.++.+..
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 4789999998886 4456666666653 48999999999843322210000 111112233 33344444444
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecCCcc
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~p~~ 651 (771)
.......++.|+|||.|+++++.++.+.+ ..+..+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888854
No 254
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=1.9e-05 Score=77.84 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=93.0
Q ss_pred cccccCCcCcccCCccCceEEEEEccC----Cceee--------ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININS----GEVQA--------VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~----~~~~~--------l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
-..|+|..+..++..-+.-|++|..+. +..++ +...++...+.+..|.+||.. ++-.+.
T Consensus 145 clawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~----l~tAS~----- 215 (445)
T KOG2139|consen 145 CLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTI----LVTASF----- 215 (445)
T ss_pred EEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCE----Eeeccc-----
Confidence 455777666555555667788886542 11111 111345567889999999997 776652
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
..++|.++|. +++...+|. ...+......|||||.+|.-.+-+.
T Consensus 216 ---------gsssi~iWdp-----------------dtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da--------- 260 (445)
T KOG2139|consen 216 ---------GSSSIMIWDP-----------------DTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA--------- 260 (445)
T ss_pred ---------CcceEEEEcC-----------------CCCCcccccccCCCceeeEEEcCCCCEEEEecccc---------
Confidence 3347888887 677777776 5566788899999999875444332
Q ss_pred cccceeee-cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 348 TDSLHRID-WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 348 ~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...||--+ .-+.+ +.+. -+ ..+...+|+|+|++|+|+.. +...||.+..
T Consensus 261 vfrlw~e~q~wt~e-rw~l-----------------gs----grvqtacWspcGsfLLf~~s--gsp~lysl~f 310 (445)
T KOG2139|consen 261 VFRLWQENQSWTKE-RWIL-----------------GS----GRVQTACWSPCGSFLLFACS--GSPRLYSLTF 310 (445)
T ss_pred eeeeehhcccceec-ceec-----------------cC----CceeeeeecCCCCEEEEEEc--CCceEEEEee
Confidence 23344111 00101 1110 11 13567899999999999875 4455666543
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.00012 Score=76.41 Aligned_cols=253 Identities=15% Similarity=0.191 Sum_probs=141.9
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEEecCC
Q 004149 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPE 120 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~ 120 (771)
+| .|..|.|-...++... ..+..+++.........|.. .++....+||.+. .+|+-.-..
T Consensus 128 ~W-~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 128 GW-VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred Cc-ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCC
Confidence 35 5666777766666542 24555555333222223321 3466777777644 566554444
Q ss_pred CCCCeEEEEecC---CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004149 121 NESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 121 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
++......++.- +....+-.-..-..+++ ...|.+-|+-|+.++....++. ..+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkv-------qm~WN~~gt~LLvLastdVDkt----------------n~S 246 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKV-------QMKWNKLGTALLVLASTDVDKT----------------NAS 246 (566)
T ss_pred CCCCcEEEEeccccccccchhhhcccccccee-------EEEeccCCceEEEEEEEeecCC----------------Ccc
Confidence 466666667622 21111111111111222 7889999999988875443221 111
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004149 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
|. +...||.++.++..+..- ......+.++.|+|+|+. .+.+- | -
T Consensus 247 YY----------------GEq~Lyll~t~g~s~~V~--L~k~GPVhdv~W~~s~~E----F~Vvy--------G-----f 291 (566)
T KOG2315|consen 247 YY----------------GEQTLYLLATQGESVSVP--LLKEGPVHDVTWSPSGRE----FAVVY--------G-----F 291 (566)
T ss_pred cc----------------ccceEEEEEecCceEEEe--cCCCCCceEEEECCCCCE----EEEEE--------e-----c
Confidence 11 237899999985444333 566778899999999998 66553 1 1
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
-+..+-++|+ .+..+-.+.+ +.-....|||-|+.|++..-.+ -..++-+||+.
T Consensus 292 MPAkvtifnl-----------------r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~ 344 (566)
T KOG2315|consen 292 MPAKVTIFNL-----------------RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVP 344 (566)
T ss_pred ccceEEEEcC-----------------CCCEeEeCCC--CCccceEECCCCCEEEEeecCC--------CCCceEEEecc
Confidence 2345666665 3333333332 3345578999999999887654 23467788877
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-----CCeeEEEEEE
Q 004149 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-----GSSQVIISVN 419 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~-----~~~~~l~~~d 419 (771)
+-+ .+..-.. ..-.-..|+|||++++-++.. ++...||.+.
T Consensus 345 n~K--~i~~~~a-------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 345 NRK--LIAKFKA-------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred chh--hcccccc-------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 632 2221110 012345799999988765542 3445566553
No 256
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.2e-05 Score=74.31 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=97.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 148 (771)
.++.+++||+....-+. .+.. ..-..++|.|+|-.+|..... +.-.+|.+- -++.+-..+.+....+
T Consensus 120 ~D~tvrLWDlR~~~cqg-~l~~-------~~~pi~AfDp~GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~-- 187 (311)
T KOG1446|consen 120 LDKTVRLWDLRVKKCQG-LLNL-------SGRPIAAFDPEGLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDE-- 187 (311)
T ss_pred cCCeEEeeEecCCCCce-EEec-------CCCcceeECCCCcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCc--
Confidence 44667777775332211 1111 123468999999766655432 234455555 3344444443332211
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004149 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..+..+.||||||.|+...+ ...++++|.-+|
T Consensus 188 ----~ew~~l~FS~dGK~iLlsT~--------------------------------------------~s~~~~lDAf~G 219 (311)
T KOG1446|consen 188 ----AEWTDLEFSPDGKSILLSTN--------------------------------------------ASFIYLLDAFDG 219 (311)
T ss_pred ----cceeeeEEcCCCCEEEEEeC--------------------------------------------CCcEEEEEccCC
Confidence 12368999999999988633 357888998888
Q ss_pred ceeec-cCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004149 229 EVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 229 ~~~~l-~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
.+..- .+.+.. ....++.|+|||+. |+-.+ .++.|+++++ ++
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~F----vl~gs---------------~dg~i~vw~~-----------------~t 263 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKF----VLSGS---------------DDGTIHVWNL-----------------ET 263 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcE----EEEec---------------CCCcEEEEEc-----------------CC
Confidence 75433 111111 12357899999995 54443 2346777777 55
Q ss_pred Ccce-ecCC-CCccccceeecCCCCEEEEEecC
Q 004149 307 LPVV-NLTE-SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 307 ~~~~-~lt~-~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+..+ .+.. ..+.+..++|+|- +..|++..
T Consensus 264 g~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~ 294 (311)
T KOG1446|consen 264 GKKVAVLRGPNGGPVSCVRFNPR--YAMFVSAS 294 (311)
T ss_pred CcEeeEecCCCCCCccccccCCc--eeeeeecC
Confidence 5543 3333 3455777889994 45565544
No 257
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.0001 Score=81.29 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=95.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeecc
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~ 234 (771)
..++++-+|++||+.+++ ..|-+++...+ ..+.+
T Consensus 100 r~~~v~g~g~~iaagsdD--------------------------------------------~~vK~~~~~D~s~~~~l- 134 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDD--------------------------------------------TAVKLLNLDDSSQEKVL- 134 (933)
T ss_pred eEEEEecCCcEEEeecCc--------------------------------------------eeEEEEeccccchheee-
Confidence 588999999999997654 45666666544 44455
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt 313 (771)
...+..+.++.+.|.|+. ||.++ -++.|+++++ +.+.+ ..|+
T Consensus 135 -rgh~apVl~l~~~p~~~f----LAvss---------------~dG~v~iw~~-----------------~~~~~~~tl~ 177 (933)
T KOG1274|consen 135 -RGHDAPVLQLSYDPKGNF----LAVSS---------------CDGKVQIWDL-----------------QDGILSKTLT 177 (933)
T ss_pred -cccCCceeeeeEcCCCCE----EEEEe---------------cCceEEEEEc-----------------ccchhhhhcc
Confidence 456667889999999997 77766 3347888888 33332 2222
Q ss_pred C---C-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 314 E---S-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 314 ~---~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
. . ...+..|+|+|+|.++++...++ .+.+++-.+.+.........
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-----------~Vkvy~r~~we~~f~Lr~~~---------------- 230 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-----------TVKVYSRKGWELQFKLRDKL---------------- 230 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCC-----------eEEEEccCCceeheeecccc----------------
Confidence 1 1 22367799999988888887764 25555544443321110000
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.........|||+|++|+.+. -++...+| |.++
T Consensus 231 -~ss~~~~~~wsPnG~YiAAs~-~~g~I~vW--nv~t 263 (933)
T KOG1274|consen 231 -SSSKFSDLQWSPNGKYIAAST-LDGQILVW--NVDT 263 (933)
T ss_pred -cccceEEEEEcCCCcEEeeec-cCCcEEEE--eccc
Confidence 001134568999999886543 34444455 5543
No 258
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.00012 Score=70.92 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh-hhhhhhcCCCCCCcceecCCCCcc
Q 004149 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKESSSEDLPVVNLTESISS 318 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lt~~~~~ 318 (771)
..+..++|||++++ ++.++.... -.||-.|+.=...++ ..| ..+. ..|-...+.
T Consensus 279 saV~~~aFsn~S~r----~vtvSkDG~-------------wriwdtdVrY~~~qDpk~L-------k~g~-~pl~aag~~ 333 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTR----AVTVSKDGK-------------WRIWDTDVRYEAGQDPKIL-------KEGS-APLHAAGSE 333 (420)
T ss_pred hheeeeeeCCCcce----eEEEecCCc-------------EEEeeccceEecCCCchHh-------hcCC-cchhhcCCC
Confidence 35678899999999 998873221 144444431000011 111 1121 233333333
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
......||.|+.|+.... ..|.++...+|+... ++..+....+..++|++
T Consensus 334 p~RL~lsP~g~~lA~s~g------------s~l~~~~se~g~~~~------------------~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG------------SDLKVFASEDGKDYP------------------ELEDIHSTTISSISYSS 383 (420)
T ss_pred ceEEEeCCCCcEEEeecC------------CceEEEEcccCccch------------------hHHHhhcCceeeEEecC
Confidence 446789999998886553 347788776655321 12222334567889999
Q ss_pred CCCEEE
Q 004149 399 DGCTML 404 (771)
Q Consensus 399 dg~~l~ 404 (771)
||++++
T Consensus 384 ~g~~~a 389 (420)
T KOG2096|consen 384 DGKYIA 389 (420)
T ss_pred CCcEEe
Confidence 999664
No 259
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.23 E-value=0.00012 Score=86.89 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=113.1
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceee-cCCCCeEEEEecCC
Q 004149 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~w-SpDg~~la~~~~~~ 174 (771)
..+...+|+| +|..|+..+... .+.+|+ .+.....+..... ..++.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~----------v~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTKAN----------ICCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecCCC----------eEEEEEeCCCCCEEEEEeC--
Confidence 5588899997 788777654433 566663 2222222221111 247788 457888887542
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 36889999876542 233 2334467788887 676
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+ .+..|.++|+.... ..........+..+...+....|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 5 66655 22356667762000 0001123445555555567789999999888
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~ 412 (771)
..+.+. .+++|+........ +... .....+....... ....+..++|++++..| ++...++.
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~-s~~~-~~~~~~~~~~~~~----~~~~V~~v~ws~~~~~l-va~~~dG~ 786 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVL-SYKF-KTIDPVSGLEVDD----ASQFISSVCWRGQSSTL-VAANSTGN 786 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceE-EEec-ccCCcccccccCC----CCcEEEEEEEcCCCCeE-EEecCCCc
Confidence 777553 47777755432110 0000 0000000000000 00124678899999865 45555666
Q ss_pred eEEEE
Q 004149 413 QVIIS 417 (771)
Q Consensus 413 ~~l~~ 417 (771)
..+|.
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 66663
No 260
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.21 E-value=5e-05 Score=71.12 Aligned_cols=176 Identities=14% Similarity=0.197 Sum_probs=115.5
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 131 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~ 131 (771)
+.++|+.+...|.++...+-+++++++....++..+...+ +++....|--..+.|+-..+.. .+.+| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 4678988888899998888899988887766665554444 6788888977777776543332 35566 3
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004149 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
.+...+.+.+...+ .++..|+||+.|-.. .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 45555555555555 589999999866443 2
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...|-.||..+=.+..- ..-...+.+++.+|+-. +++.+ +....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 13455566655332222 12223466788999874 44443 23347888887
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccceeecCCCCEEE
Q 004149 292 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~ 332 (771)
.+++..-. ..+.+.+..++|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45567789999999998433
No 261
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=2.8e-05 Score=78.35 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=116.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++++||+.||....++ .+.+|+=.....+... ...|+.| ..+.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------- 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------- 206 (398)
T ss_pred cceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC-------
Confidence 356789999999998764433 5666631111111111 1223333 79999999999999832
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
....||++++|. +...++...+.......|+-|+.++ .|
T Consensus 207 --------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~--~l 246 (398)
T KOG0771|consen 207 --------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE--TL 246 (398)
T ss_pred --------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCCc--eE
Confidence 367889988883 3334223334456677888887431 12
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+.... ...|..+++... ..+ +-...++.......+.+...|+||+.++..+++.
T Consensus 247 ~laa~~~~------------~~~v~~~~~~~w----------~~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 247 RLAASQFP------------GGGVRLCDISLW----------SGS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred EEEEecCC------------CCceeEEEeeee----------ccc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 22221111 112222222100 000 2234455555566788999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+-+++..+=+..++. |..+...+..+.|+||.+.+.- .+.+....+..+
T Consensus 304 -----------sVai~~~~~lq~~~~v------------------k~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 304 -----------SVAIYDAKSLQRLQYV------------------KEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred -----------cEEEEEeceeeeeEee------------------hhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 2555554432211111 1112224567889999986643 444555666666
Q ss_pred EC
Q 004149 419 NV 420 (771)
Q Consensus 419 d~ 420 (771)
..
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 55
No 262
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.19 E-value=1.7e-05 Score=81.00 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=64.2
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 556 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 556 ~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+..+.++|..|++++.++... +.. ..++.....+.+..+++.+++.. ..++|-++|+|.||.++..+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~-~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDA-SLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchH-hhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 357889999999999999886321 111 12222333467778888887763 3478999999999999999998
Q ss_pred hCCCc-eeEEEecCCccch
Q 004149 636 QAPDK-FVAAAARNPLCNL 653 (771)
Q Consensus 636 ~~p~~-~~a~v~~~p~~~~ 653 (771)
.++.+ ++.++......|.
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 88776 7777665554443
No 263
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.19 E-value=5.1e-05 Score=78.14 Aligned_cols=147 Identities=16% Similarity=0.168 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh--c-CCCCCcchhhhhc
Q 004149 597 VNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--G-TTDIPDWCYVESY 671 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~--~-~~~~~~~~~~~~~ 671 (771)
+-|++.|+.++..+..-.. -++.++|+|+||+++...+.-.|-.+.+++--++.+.....+ + ..+...+......
T Consensus 163 AiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~ 242 (403)
T PF11144_consen 163 AIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEF 242 (403)
T ss_pred HHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCcccccccccc
Confidence 4577778888877633233 389999999999999999988899999988777655321111 0 0010000000000
Q ss_pred --c-CCCCCcCCCC--------CC---hh--hHHHHhhcCccccccCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004149 672 --G-SKGKDSFTES--------PS---VE--DLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 672 --~-~~~~~~~~~~--------~~---~~--~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
. ......+... +. .+ ..+.......+..-.+. ++-.+..|+..|..+|.++-+++++.+++.
T Consensus 243 ~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~l 322 (403)
T PF11144_consen 243 FNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKNL 322 (403)
T ss_pred cccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 0 0000000000 00 00 00011111111111122 244666799999999999999999999999
Q ss_pred CCCEEEEEeC
Q 004149 734 GVETKVIVFP 743 (771)
Q Consensus 734 g~~~~~~~~~ 743 (771)
|.++++..+.
T Consensus 323 gfda~l~lIk 332 (403)
T PF11144_consen 323 GFDATLHLIK 332 (403)
T ss_pred CCCeEEEEec
Confidence 9999999883
No 264
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.16 E-value=0.00016 Score=74.95 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=139.1
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCC----CCcchHHHHHHH-HCCcEEEEEC-CCCCCC-CCh------------
Q 004149 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----LSSYSKSLAFLS-SVGYSLLIVN-YRGSLG-FGE------------ 582 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----~~~~~~~~~~la-~~G~~V~~~d-~rG~~~-~g~------------ 582 (771)
...++.|++ .......++++.||..... .......+..+| .-|-.|+.+. -+..+- |..
T Consensus 51 ~l~I~vP~~--~~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIA 128 (367)
T PF10142_consen 51 WLTIYVPKN--DKNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIA 128 (367)
T ss_pred EEEEEECCC--CCCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHH
Confidence 345778885 2455678999998762211 112223334443 4555555443 222211 111
Q ss_pred -hhhhcCC---CCccc--cchhhHHHHHHHHH----HcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCcc
Q 004149 583 -EALQSLP---GKVGS--QDVNDVLTAIDHVI----DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLC 651 (771)
Q Consensus 583 -~~~~~~~---~~~~~--~~~~D~~~~i~~l~----~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~ 651 (771)
+|..-+. ..+.. ....-+.+|++.+. +...++.++.+|.|.|-=|..+...|+ ..++++|++.. -++.
T Consensus 129 ytW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~L 207 (367)
T PF10142_consen 129 YTWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVL 207 (367)
T ss_pred HHHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccC
Confidence 1111111 11111 11334444444333 334567899999999999999998888 45678877743 2344
Q ss_pred chhhhhcC--CCCC-cchh-hhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004149 652 NLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 652 ~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~ 727 (771)
++...... .... .|.+ ...|...+.... ....+......-.+|+.+.++++.|-||+.|..|++..++.+.-++
T Consensus 208 N~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~--l~tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~ 285 (367)
T PF10142_consen 208 NMKANLEHQYRSYGGNWSFAFQDYYNEGITQQ--LDTPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYY 285 (367)
T ss_pred CcHHHHHHHHHHhCCCCccchhhhhHhCchhh--cCCHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHH
Confidence 43221110 0001 1211 011111111111 1223444556677999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHHh
Q 004149 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~l 770 (771)
..|+. +..+.++|+++|.+.. .+..+.+..|+...+
T Consensus 286 d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 286 DKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRAFYNRIQ 321 (367)
T ss_pred hhCCC---CeeEEeCCCCCcccch----HHHHHHHHHHHHHHH
Confidence 99975 4688999999999875 567888999988754
No 265
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.16 E-value=2.6e-05 Score=80.19 Aligned_cols=260 Identities=15% Similarity=0.165 Sum_probs=132.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+++.++-|.|.+++--+-. ..+.+|+ .| ..+..-.+ +...| .+..++|||.|..|+.++..
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEecC
Confidence 457888999999988753322 2445552 11 11111111 12222 23689999999999998755
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecCC
Q 004149 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
...+ ++.+| |-.+..-...+-|+.|+.. |-+-. +..-.|.|+.
T Consensus 236 aqak-------------------------l~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~---------lt~g~whP~~ 280 (641)
T KOG0772|consen 236 AQAK-------------------------LLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAE---------LTCGCWHPDN 280 (641)
T ss_pred ccee-------------------------EEccC-CceeeeeeccchhhhhhhccCCceee---------eeccccccCc
Confidence 4322 12233 2222222334555655532 22222 3345799999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCC--Cccccceeec
Q 004149 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES--ISSAFFPRFS 325 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~--~~~~~~p~~S 325 (771)
+. .+.++.. .+.|.++++. +..+-.++ ... .-.+.+.+|+
T Consensus 281 k~----~FlT~s~--------------DgtlRiWdv~----------------~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 281 KE----EFLTCSY--------------DGTLRIWDVN----------------NTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred cc----ceEEecC--------------CCcEEEEecC----------------CchhheeEEeeccCCCcccCceeeecC
Confidence 98 6555422 2244455542 22221111 111 1146788999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004149 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~ 405 (771)
|||+.||-.-.+. .|-.|+..+-.... +..+ ++...+| ..+..+.||+||++| +
T Consensus 327 rdg~~iAagc~DG-----------SIQ~W~~~~~~v~p-------~~~v----k~AH~~g---~~Itsi~FS~dg~~L-l 380 (641)
T KOG0772|consen 327 RDGKLIAAGCLDG-----------SIQIWDKGSRTVRP-------VMKV----KDAHLPG---QDITSISFSYDGNYL-L 380 (641)
T ss_pred CCcchhhhcccCC-----------ceeeeecCCccccc-------ceEe----eeccCCC---CceeEEEeccccchh-h
Confidence 9999877544332 35555542211111 0000 1111111 246788999999966 4
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCC--CCCCeEEEEEe
Q 004149 406 SSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSP--VDVPQVKYGYF 465 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~d~~~l~~~~s~~--~~p~~l~~~~~ 465 (771)
+...++...+|-++.-..-+...+. .........|||+.+.|+.-.+.+ ..+..|++++.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 5555666677755432221111111 111224468999988777655444 34456777764
No 266
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.14 E-value=0.0002 Score=64.36 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=91.8
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004149 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.....+|..+.++..+... ++.++|++||.|+.++++++.+....++++.+.+|.---... .
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-----~--------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-----I--------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc-----c---------
Confidence 44445788887777655542 455999999999999999998776689999999886311000 0
Q ss_pred cCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
........+|.. ..++.-|.++++..+|+.++++.++.+.+++-. .++...++||....
T Consensus 101 ---------------~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 101 ---------------RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred ---------------chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 000111111211 123346899999999999999999999998865 67788888995432
Q ss_pred --CCChHHHHHHHHHHHHH
Q 004149 752 --PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 --~~~~~~~~~~i~~wl~~ 768 (771)
.....+.+..+..++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23334555555555544
No 267
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.14 E-value=2.7e-05 Score=71.56 Aligned_cols=182 Identities=18% Similarity=0.233 Sum_probs=105.5
Q ss_pred cEEEEEcC-CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HG-g~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
-++|++-| |++. ..-...+..|+++|+.|+.+|-+- | |. ..+...+...|+.+.+++..++- ..+
T Consensus 3 t~~v~~SGDgGw~---~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~w--~~~ 68 (192)
T PF06057_consen 3 TLAVFFSGDGGWR---DLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRARW--GRK 68 (192)
T ss_pred EEEEEEeCCCCch---hhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHHh--CCc
Confidence 35677777 3322 122346789999999999999542 1 11 12233345788888888877763 468
Q ss_pred eEEEEEcChhHHHHHHHHHhCCC----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHh
Q 004149 617 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
++.|+|+|+|+-+.-.+..+.|. +++.+++.+|......-.. ..+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeih---v~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIH---VSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEE---hhhhc-----CC---------CCCc-----c
Confidence 99999999999888888777664 5777888777532110000 00110 00 0000 0
Q ss_pred hcCccccccCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 693 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
...+...+.++. .|++.++|++|.-. +...++. ..++.+..||..| |... -....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~d--y~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDGD--YDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCCC--HHHHHHHHHHHHh
Confidence 011223344554 58999999988642 1122433 3478889988544 5422 2344455555443
No 268
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.13 E-value=0.0015 Score=65.23 Aligned_cols=222 Identities=16% Similarity=0.145 Sum_probs=124.5
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec
Q 004149 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS 131 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~ 131 (771)
++.-|+|..+-. .++++++.. .+...+....+ ...---..-+|||||++|+.+.+.-+....++-+|+
T Consensus 16 ~~~avafaRRPG--------~~~~v~D~~--~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 16 RPEAVAFARRPG--------TFALVFDCR--TGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CCeEEEEEeCCC--------cEEEEEEcC--CCceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 666777765432 366666653 22333222222 111113468999999988555444335556777773
Q ss_pred -CCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004149 132 -QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 132 -~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
....+++-..+. +.| .+.|.|||+.|+.. +......+.. ++
T Consensus 84 ~~~~~~ri~E~~s~GIGPH----------el~l~pDG~tLvVA-NGGI~Thpd~-------GR----------------- 128 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPH----------ELLLMPDGETLVVA-NGGIETHPDS-------GR----------------- 128 (305)
T ss_pred CcCCcEEEeEecCCCcChh----------hEEEcCCCCEEEEE-cCCCccCccc-------Cc-----------------
Confidence 334555544432 333 78899999888764 3221111100 00
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCC---CCCccceEEEecCCCCCccEEEEEe-ecCcceeeeeeeeccCCceeE
Q 004149 208 WGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---~~~~~~~~~wspDg~~~~~~l~~~~-~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.++.....++.|..+|..+|++..--..+ ...++..++|.+||. ++|.. ++..+. ....-|.
T Consensus 129 -~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-----V~~a~Q~qg~~~--------~~~PLva 194 (305)
T PF07433_consen 129 -AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-----VAFAMQYQGDPG--------DAPPLVA 194 (305)
T ss_pred -eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-----EEEEEecCCCCC--------ccCCeEE
Confidence 01122335689999999999853321022 345899999999997 55543 333221 1122344
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVVNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+++. ++..+.+. .-.+.+.++++++||..|+..+.+. ..+.+||.
T Consensus 195 ~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----------g~~~~~d~ 246 (305)
T PF07433_consen 195 LHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----------GRVAVWDA 246 (305)
T ss_pred EEcC------------------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----------CEEEEEEC
Confidence 4442 22222222 1235688999999999998888763 45777888
Q ss_pred CCCCCC
Q 004149 357 PTNGNF 362 (771)
Q Consensus 357 ~~~~~~ 362 (771)
.++...
T Consensus 247 ~tg~~~ 252 (305)
T PF07433_consen 247 ATGRLL 252 (305)
T ss_pred CCCCEe
Confidence 887753
No 269
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.12 E-value=0.00011 Score=69.57 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=115.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCC-Ce--EEEEecC------CcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENES-PI--QFELWSQ------SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~-~~--~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+....||++|.++++..+..-+. +. ++.+... .++...+..+... ....-|+|-|+.|++.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk---------it~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK---------ITSALWGPLGETIIAG 165 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc---------eeeeeecccCCEEEEe
Confidence 467788999999999987654232 22 3333311 1222223222221 1477899999999885
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
- ....|-.||+.+|+...-........+.+..+|||
T Consensus 166 h--------------------------------------------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 166 H--------------------------------------------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred c--------------------------------------------CCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 2 33678899999885443322334457889999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004149 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
... .+..+ ++..-.++|. .+-++..-......+...++||--..
T Consensus 202 ~T~----FiT~s---------------~Dttakl~D~-----------------~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 202 RTY----FITGS---------------KDTTAKLVDV-----------------RTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cce----EEecc---------------cCccceeeec-----------------cceeeEEEeeecccccceecccccce
Confidence 986 55444 2223344454 33333222233445677889998777
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004149 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~ 410 (771)
++.....++ +|+.+...+. ..-......++-.++-+...|.+ .-+.+++++|||+ .|.+...+
T Consensus 246 VilgGGqeA--------------~dVTTT~~r~-GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGk-sYsSGGED 308 (327)
T KOG0643|consen 246 VILGGGQEA--------------MDVTTTSTRA-GKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGK-SYSSGGED 308 (327)
T ss_pred EEecCCcee--------------eeeeeecccc-cchhhhHHHHHHHHHhccccccc-cCcceeEECCCCc-ccccCCCC
Confidence 766543321 2222211110 00000000001011111122211 2367899999998 66666667
Q ss_pred CeeEEEEEEC
Q 004149 411 SSQVIISVNV 420 (771)
Q Consensus 411 ~~~~l~~~d~ 420 (771)
+..+|..++.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 7777776653
No 270
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.0011 Score=67.72 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=98.5
Q ss_pred eEEEEEccCCce-eeccCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 219 SLFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 219 ~l~v~d~~~~~~-~~l~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+++++++.+.. +.+..... ..........|||. ++|....... .+... ......||+++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p------- 150 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP------- 150 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC-------
Confidence 345555555554 44421111 12455678899987 8887643100 11110 012237999995
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.++..+.+..........+|||||++|++..... ..|+++++..... .+... . ..
T Consensus 151 ----------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~-~---~~ 205 (307)
T COG3386 151 ----------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR-R---GF 205 (307)
T ss_pred ----------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc-c---eE
Confidence 4455555555466678899999999998887653 5799998864111 11110 0 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 453 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~d~~~l~~~~s~ 453 (771)
+... ..+| .....+.-.||. |+.... .+...+-+++.+...+..+..+......+.| .++.+.|+.++..
T Consensus 206 ~~~~---~~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFD---EEPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEcc---CCCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 1000 0111 122344445554 433332 2224566677774445555444233333444 4567788777766
Q ss_pred CCCC
Q 004149 454 PVDV 457 (771)
Q Consensus 454 ~~~p 457 (771)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 6554
No 271
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=0.00036 Score=67.77 Aligned_cols=235 Identities=15% Similarity=0.147 Sum_probs=126.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCccc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 146 (771)
...+.+..||+.+-+ -.+-| ......+...+||+||++|+..+... ...+| ..|...+.+.++..+
T Consensus 42 c~nG~vvI~D~~T~~-iar~l-----saH~~pi~sl~WS~dgr~LltsS~D~-----si~lwDl~~gs~l~rirf~spv- 109 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFR-IARML-----SAHVRPITSLCWSRDGRKLLTSSRDW-----SIKLWDLLKGSPLKRIRFDSPV- 109 (405)
T ss_pred ccCCcEEEEEccccc-hhhhh-----hccccceeEEEecCCCCEeeeecCCc-----eeEEEeccCCCceeEEEccCcc-
Confidence 444566666664432 11222 22234588899999999998766543 34444 334455555554444
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
....|.|-.+..+.+.-.. ..-+++++.
T Consensus 110 ---------~~~q~hp~k~n~~va~~~~-------------------------------------------~sp~vi~~s 137 (405)
T KOG1273|consen 110 ---------WGAQWHPRKRNKCVATIME-------------------------------------------ESPVVIDFS 137 (405)
T ss_pred ---------ceeeeccccCCeEEEEEec-------------------------------------------CCcEEEEec
Confidence 4778888655444433221 123445554
Q ss_pred CCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004149 227 SGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 227 ~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.++-+.|. ...+ .......|.+-|+. |+... ..+.|..+|.
T Consensus 138 ~~~h~~Lp-~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv~~a--------------- 182 (405)
T KOG1273|consen 138 DPKHSVLP-KDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLVYDA--------------- 182 (405)
T ss_pred CCceeecc-CCCccccccccccccccCCCCE----EEEec---------------CcceEEEEec---------------
Confidence 45444442 1111 12222357777885 55432 2235667775
Q ss_pred CCCCCcce---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC---C-CCCCCCc--cceeeEEe
Q 004149 303 SSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---T-NGNFSSL--EKIVDVIP 373 (771)
Q Consensus 303 ~~~~~~~~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~---~-~~~~~~~--~~~~~~~~ 373 (771)
.+-+++ +++. -..+.+..+|-.|+.|++...+. -|..+++. . |....+. ....+++.
T Consensus 183 --~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 183 --ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred --chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 443322 2222 23477889999999998887664 24455432 1 1111111 01111111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
-. .=...+||.||.+++..+ .....||.+....|.+.++..+.
T Consensus 249 k~--------------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 249 KL--------------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred hh--------------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCC
Confidence 00 012567899999876655 34456999999999999887654
No 272
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.08 E-value=4.6e-05 Score=75.34 Aligned_cols=210 Identities=13% Similarity=0.091 Sum_probs=111.3
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcE----EEEECCCCCCCCChhhh--------hcCCC-Cc---cccchhh
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYS----LLIVNYRGSLGFGEEAL--------QSLPG-KV---GSQDVND 599 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~----V~~~d~rG~~~~g~~~~--------~~~~~-~~---~~~~~~D 599 (771)
.-..||+||..++ ...+...+..+. +.|.+ ++.++.-|.-.+...+. +-... +. ......=
T Consensus 11 ~tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~w 88 (255)
T PF06028_consen 11 TTPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKW 88 (255)
T ss_dssp -EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHH
Confidence 3457899996655 557888888886 66642 44444444221111110 00011 11 1122445
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004149 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+..++.+|.++..+ +++-++||||||..++.++..+.. .+..+|.+++.++-..... ..... ...
T Consensus 89 l~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~--- 158 (255)
T PF06028_consen 89 LKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDL--- 158 (255)
T ss_dssp HHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-C---
T ss_pred HHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhh---
Confidence 66778888888654 689999999999999999887521 3555665555444221100 00000 000
Q ss_pred CCCcCCCCCC--hhhHHHHhhcCccccccCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--
Q 004149 675 GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN-- 744 (771)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-- 744 (771)
....|. ......+...- ...+ .-.+.+|-|.|. .|..||...+..+...++......+-..+.|
T Consensus 159 ----~~~gp~~~~~~y~~l~~~~-~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~ 232 (255)
T PF06028_consen 159 ----NKNGPKSMTPMYQDLLKNR-RKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKD 232 (255)
T ss_dssp ----STT-BSS--HHHHHHHHTH-GGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGG
T ss_pred ----cccCCcccCHHHHHHHHHH-HhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCC
Confidence 000011 11111111110 0111 123679999998 8999999999988888877666666666655
Q ss_pred CCccCCCCCChHHHHHHHHHHH
Q 004149 745 DVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~wl 766 (771)
+.|.-. +++. ++.+.|..||
T Consensus 233 a~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 233 AQHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp GSCCGG-GCCH-HHHHHHHHHH
T ss_pred CccccC-CCCH-HHHHHHHHHh
Confidence 578654 3443 6777777776
No 273
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.07 E-value=0.00011 Score=77.40 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=85.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|-+||+.+++.+.-. ......+.+++|||||++ ++.+. .+..|+++..
T Consensus 698 yd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRL-VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred ccceeeeeehhhhhhhhee-ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 4578999999988754321 344557889999999999 99886 3346777764
Q ss_pred hhhhhcCCCCCCcceecCCCCc----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLTESIS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.++ .+++.+..+ ......|.=||+.|+....+. .+..+|-+||.++-....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 233433332 245678999999998887765 34567888887654433332222111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
.+ +.--+.+-+|...|+++.-.+....+|.
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 11 1223445678887766554333333443
No 274
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.00079 Score=70.63 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=89.6
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccce
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p 322 (771)
+..|.+-|.. |+..+..+. .+.+-. +-....||.+++ ++..+ +.| ...+.+.+.
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L-~k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPL-LKEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEec-CCCCCceEE
Confidence 6789999988 766543221 122222 235568999997 53333 333 346778999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
.|||+|+.++.+..-- ...+-++|+...-...+.++. ...+-|+|.|+.
T Consensus 277 ~W~~s~~EF~VvyGfM---------PAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFM---------PAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEEecc---------cceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887665321 234566666553221111111 124569999998
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCC
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~d~~~l~~~~s~~ 454 (771)
|++..-..=...+-.+|+.+ .+.|.... .+.....|+|||.+++.+..+|
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 77765433223344446655 33333322 2345678999999998776543
No 275
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.03 E-value=0.0001 Score=75.63 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=127.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcc--ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE--ecCCcc
Q 004149 70 RKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 145 (771)
.++.+.+|++...+.+. .+ +.+++ ..+.+..-..+|||+.|+.-.+ ...+.||+-......+ .++...
T Consensus 438 GkgcVKVWdis~pg~k~-Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGe-----astlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKS-PV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred CCCeEEEeeccCCCCCC-cc--ccccccCcccceeeeEecCCCceEEeccc-----cceeeeeeccCCCcchhhhcCCcc
Confidence 44566777775554321 11 11111 2245777889999999976432 3355666322221111 111110
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004149 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
. ....++.|||.| |.|......+- ..|+.-.......++.+..-..-+..+.|+-.++++.-++.+.-||+
T Consensus 510 p-------aCyALa~spDak-vcFsccsdGnI-~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 510 P-------ACYALAISPDAK-VCFSCCSDGNI-AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred h-------hhhhhhcCCccc-eeeeeccCCcE-EEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 0 114778999986 77765433221 13443222222233333333334456777667777888899999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
..+...+- ..-...+.++..+|.|.+ |+..- .+++++++.. .
T Consensus 581 regrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------s 622 (705)
T KOG0639|consen 581 REGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------S 622 (705)
T ss_pred hhhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------C
Confidence 87643222 233446788899999999 87653 3457888875 5
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.-+|.-+...+.+..|++-|++++-+..++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchh
Confidence 556677888888899999999999877666554
No 276
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.03 E-value=0.0004 Score=69.52 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=97.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+++|+||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 5899999999999997221 346888887654433333
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.. .....|+|+++|. +.++...... ..++..+.. .......+...
T Consensus 64 -~g-~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~~~~~----------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -TG-GSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVRDSAS----------------GTGEPVEVDWP 108 (253)
T ss_pred -cC-CccccccccCCCC-----EEEEEcCCCc------------eEEEEecCC----------------CcceeEEeccc
Confidence 22 2677899999965 5555421111 122221110 11222223222
Q ss_pred C--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC--C-CCCCccceeeEEecccccCCCCCcccccCC
Q 004149 316 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
. ..+.+.++||||.+++++..... ..+|++.-+..+ + ...+.... .+ ... . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~v~va~V~r~~~g~~~~l~~~~-~~---~~~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG--------GGRVYVAGVVRDGDGVPRRLTGPR-RV---APP----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC--------CCeEEEEEEEeCCCCCcceeccce-Ee---ccc----c-----cCc
Confidence 1 16889999999999999997751 356777655322 2 11221111 10 000 0 012
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
...+.|++++..+++....+..... .+..+++..+.+..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578999999755555444443333 46666777777733
No 277
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.02 E-value=3.7e-05 Score=77.06 Aligned_cols=278 Identities=12% Similarity=0.056 Sum_probs=150.1
Q ss_pred CCcc--eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004149 51 GNGT--QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 51 ~dg~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++|+ -+.|..+...|.++.....|.+|++..+..... +.+....+.+....+-++++.++-.++. +..++|.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----~tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wn 247 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----STLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWN 247 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----hhhhccCCCcceeeecCCCceEEeecCC--Cceeeee
Confidence 4454 344555555677777777777776644432222 2233344678899999999988654433 4445555
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004149 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
++.......++ +..++| .++.|.-....++-.+.+.+.+ .|+.......+.. ...+....++..+
T Consensus 248 vd~~r~~~TLs----GHtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt~-l~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 248 VDSLRLRHTLS----GHTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKTV-LPGSQCNDIVCSI-- 312 (459)
T ss_pred ccchhhhhhhc----ccccce------eeehhhccccceeeccccchhh--hhhhhhhheeccc-cccccccceEecc--
Confidence 54221111111 122222 4666666665555555555443 3332111111000 0011111111110
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
-....+.....|..||..++..+.. .+....+.++..++||.. |...+ ++..|-++|+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl- 370 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL- 370 (459)
T ss_pred eeeeecccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-
Confidence 0011122345689999888877666 566668899999999998 77655 3335667776
Q ss_pred cccchhhhhhhhcCCCCCCcceecC-CCC----ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 289 LYKSEASELELKESSSEDLPVVNLT-ESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~lt-~~~----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+.+++... ... .......|||||++++-.+.+ ..||+|++.+++...
T Consensus 371 ----------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 371 ----------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEK 423 (459)
T ss_pred ----------------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEE
Confidence 444444332 221 125668999999998876655 359999998887532
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+.. ..... + .+....|.|-|+.|+-. +......||
T Consensus 424 ~l~----------~s~s~--~-----aI~s~~W~~sG~~Llsa-dk~~~v~lW 458 (459)
T KOG0288|consen 424 VLS----------LSTSN--A-----AITSLSWNPSGSGLLSA-DKQKAVTLW 458 (459)
T ss_pred Eec----------cCCCC--c-----ceEEEEEcCCCchhhcc-cCCcceEec
Confidence 211 11111 1 24567899999877533 333333444
No 278
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.01 E-value=0.00018 Score=73.86 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=138.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+-+.++|-.-+.+ |+. ....+.||+ .+....+.+++.-. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhV-yTg-----GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YTG-----GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCccee-Eec-----CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 4567778777766 432 222455552 23333333322110 1223468889999999988532
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCcc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~ 256 (771)
...|-+||+....++.-..++ .......++.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 267889999877654431122 222344678999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+.|.. |.+. .|.++||- +-..++++..+...+.....|+||.+|....-
T Consensus 523 -vcFsc------------csdG--nI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 523 -VCFSC------------CSDG--NIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred -eeeee------------ccCC--cEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 88887 4443 56777771 33456778777777889999999999864333
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ +.+..||+..+...+- -+| ...+.++..+|.+.+|++-.. +.+++
T Consensus 572 D-----------ntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavGMe---ns~ve 617 (705)
T KOG0639|consen 572 D-----------NTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVGME---NSNVE 617 (705)
T ss_pred c-----------cceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeeecc---cCcEE
Confidence 3 4578888876543211 011 124567778899998876543 23456
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004149 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~ 450 (771)
.+.....+..+|....+-+-..-|++.|++++-+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeec
Confidence 6666555666777666544445678888876644
No 279
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.98 E-value=1.9e-05 Score=89.46 Aligned_cols=126 Identities=23% Similarity=0.263 Sum_probs=82.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc--hHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCccccc
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~V~~~d~rG-~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..-+|.|......+ .|++|++|||+...... .+ ......+..+..+|+.++||- .-|+....-...++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 445688887432222 89999999987654332 12 223334556689999999993 2222221111123443 3
Q ss_pred hhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCc
Q 004149 597 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~ 650 (771)
..|+..|++|+.++ ..-|+++|.|+|||.||..+..++... ..+|..+|..++.
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 67999999999875 336999999999999999998776531 2467667766654
No 280
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.00042 Score=76.04 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
-++.|+.+ +-++....+..+.+|++...+...+ ......++.++|.|-..+ +|++- | -+
T Consensus 373 LDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSG-----------S--LD 431 (712)
T KOG0283|consen 373 LDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISG-----------S--LD 431 (712)
T ss_pred eecccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeec-----------c--cc
Confidence 34456655 4566666778999999998888777 667778999999996654 24331 1 23
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|.++++ ...++.--++-...+....|+|||+..+..+..
T Consensus 432 ~KvRiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 432 GKVRLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred cceEEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 35666665 334444444445568899999999987766654
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.96 E-value=0.019 Score=69.39 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=69.1
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE-EecccccCCCCCc-ccccCCCCCCcc
Q 004149 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV-IPVVQCAEGDCFP-GLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~-g~~~~~~~~~~~ 396 (771)
....+|+|||++|++.... ..+|.++|+.+++...+..+.... .........+... ...-..+..+++
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 4567899999988766543 357999998876532111100000 0000000000000 000013456788
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------------CceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 397 s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------------~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
++||. ||++.. ....|..+|.+++.+..+..... ......++++|+ ++++. + ...+|.+
T Consensus 812 d~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irv 884 (1057)
T PLN02919 812 AKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRY 884 (1057)
T ss_pred eCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEE
Confidence 99997 655543 34567778988888776643210 122346777775 44433 2 2235777
Q ss_pred EEeccc
Q 004149 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
+++.++
T Consensus 885 id~~~~ 890 (1057)
T PLN02919 885 LDLNKG 890 (1057)
T ss_pred EECCCC
Confidence 776554
No 282
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.96 E-value=7.2e-05 Score=75.09 Aligned_cols=270 Identities=12% Similarity=0.094 Sum_probs=144.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+..+.|-++...++-. +...++.+| ..+....+...-.+.. +.+..+.+.+|+++++-.+.+...+
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~------g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSL------GNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccC------CCcceeeecCCCceEEeecCCCcee
Confidence 556777888876666542 344466677 2232211111111222 2236889999999988877666433
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+.........+..+....-...|...-...+.+..+.+|-.||+..+...+-. .+.. ....+.-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S-~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGS-QCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccc-cccceEec---ce----
Confidence 3443222222222222222211112211111334445667788888775543321 2222 22233333 11
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.++.+ .....|..+|. .++..++-.+..+.+.+...|+||..|...+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33332 12235777776 555555555556678999999999998777655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
+ .|-++|+.+.+.+...... |..+. .....+||||+.+++.- +. ...+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA~----------------g~k~asDwtrvvfSpd~~YvaAG-S~--dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSAE----------------GFKCASDWTRVVFSPDGSYVAAG-SA--DGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeecc----------------ccccccccceeEECCCCceeeec-cC--CCcEE
Confidence 4 3778888776543321111 11111 23567899999966533 32 34567
Q ss_pred EEECCCCcEEEecCCCC---CceeeEEeecCCEEEEEE
Q 004149 417 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~---~~~~~~~s~d~~~l~~~~ 451 (771)
.+++.+|+++....... .+....|++.|..++.+.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 77888999887754433 244567777777766543
No 283
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=0.00036 Score=75.27 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=100.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
........+||++.|+.+.+. ++..+| ..+...+..-. .| .++.-...|+|.|..|+-..-+..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa---~H-----e~Pvi~ma~~~~g~LlAtggaD~~- 128 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA---IH-----EAPVITMAFDPTGTLLATGGADGR- 128 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh---cc-----CCCeEEEEEcCCCceEEeccccce-
Confidence 456788999999988776443 477777 44433333222 11 011246789999976666544432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCc--ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
.+.|+.........++.+........|.++|.. ++++..+..+++||+.++..-..+-......+.+..+++|+..
T Consensus 129 -v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 129 -VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred -EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 346665555555666666666667778888753 4566678899999998665411111334456889999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 88887 4457888887
No 284
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=0.0022 Score=69.55 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=147.3
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
++.....+....+|.|...++-.++ .-+.+|+ ..+..+.+.+. .+ -+..|=|.++.|+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~-y~----------l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG-YI----------LASKFVPGDRYIVLGT 431 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc-cE----------EEEEecCCCceEEEec
Confidence 3445567889999988766543222 2366773 23333333322 22 3777889888887765
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-----CCceee-cc-----CCCCCC
Q 004149 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-----SGEVQA-VK-----GIPKSL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-----~~~~~~-l~-----~~~~~~ 240 (771)
..+... .++............+..-.......+|....+++..+..+-.||.. .|..++ |. -..-+.
T Consensus 432 k~Gel~--vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 432 KNGELQ--VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred cCCceE--EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 443211 12211111111111222223344456665555566667777777653 122211 10 011122
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+-.+.+||||+. |+..- .+....||.+|- =.=...|..+.-.+.
T Consensus 510 dvL~v~~Spdgk~----LaVsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 510 DVLCVSVSPDGKL----LAVSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVL 554 (888)
T ss_pred cEEEEEEcCCCcE----EEEEe-------------ccCeEEEEEecc------------------eeeeeeeccccccee
Confidence 4567899999997 77654 344458888872 223455677777889
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
+...|||++.|+..+.+.. +.+|-++=|.-..-.-. +..++..+.|.|+.
T Consensus 555 smDIS~DSklivTgSADKn-----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKN-----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCCcCeEEeccCCCc-----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc
Confidence 9999999999988877652 44444444443221111 11245667788865
Q ss_pred CEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 401 CTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.++|+...++...-| |-+.= .++.+......+.-.+.+|+|+.++-.+
T Consensus 605 -~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 605 -HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred -eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 588888766554444 42221 2333333333444456778888665433
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.95 E-value=0.002 Score=66.81 Aligned_cols=180 Identities=15% Similarity=0.078 Sum_probs=105.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++.+..+.+.... +--.....++-|.+.|+. |.+....+. +.+-. +-..+.||++++
T Consensus 202 a~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~----ll~l~~t~~--ksnKs--yfgesnLyl~~~---------- 262 (561)
T COG5354 202 AMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY----LLVLVMTHT--KSNKS--YFGESNLYLLRI---------- 262 (561)
T ss_pred cEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----EEEEEEEee--ecccc--eeccceEEEEee----------
Confidence 45666666554443331 223445668899999998 888764332 11111 123468999998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004149 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
....++......+.+.+..|+|+++.++.++.-. ...+-.+|+.++-...+.++
T Consensus 263 -------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------pa~~s~~~lr~Nl~~~~Pe~---------- 316 (561)
T COG5354 263 -------TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------PASVSVFDLRGNLRFYFPEQ---------- 316 (561)
T ss_pred -------cccccceeccccccceeeeecccCCceeEEeccc---------ccceeecccccceEEecCCc----------
Confidence 4333333324466788999999999999888322 23456666665411111111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
--..+.|||.++++++..-..-...+-.++..+ +...+ .......+..-|+||+..+.....++.
T Consensus 317 ------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 317 ------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred ------------ccccccccCcccEEEEecCCccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 123567999999998866544444566667644 44444 223334466789999987665554443
No 286
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.91 E-value=0.00017 Score=72.40 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCC----cc-----cccc-cCCCcccceeecCC
Q 004149 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ----TV-----HGSV-YADGWFEGISWNSD 163 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~-~~~~~~~~~~wSpD 163 (771)
+......+....|||+|..||-..+.+ ...+|..+. .+.++... .. +... .-......++||||
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~-~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGG-----EVFLWKQGD-VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCc-----eEEEEEecC-cCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 333445688899999999998654332 455662221 11100000 00 0000 00122358899999
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004149 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
+..+++.+ ..+.+++||+..|.+..+. -.....+.
T Consensus 135 ~~~l~s~s--------------------------------------------~dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGS--------------------------------------------VDNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeee--------------------------------------------ccceEEEEEeccceeEeec-cccccccc
Confidence 99888854 3478899999999887763 34556788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---ccc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAF 320 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~ 320 (771)
.++|.|-++. |+..+....++..+. +-...++.+..+ .+..+.....-+...+|..+.. ..+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~----~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSA----KLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeee----eeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 776553221111111 111123332210 0111111112233445554332 367
Q ss_pred ceeecCCCCEEEEE
Q 004149 321 FPRFSPDGKFLVFL 334 (771)
Q Consensus 321 ~p~~SpDG~~l~f~ 334 (771)
.++|||||..|+--
T Consensus 235 RlsfTPdG~llvtP 248 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTP 248 (434)
T ss_pred hcccCCCCcEEEcc
Confidence 79999999976643
No 287
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.90 E-value=0.00014 Score=68.20 Aligned_cols=134 Identities=7% Similarity=0.084 Sum_probs=86.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+||..+|+..+- +.-...+.++..|+||+ |+.++. .+.|--+|.
T Consensus 165 ~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~-----ilTia~---------------gssV~Fwda---------- 212 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGR-----ILTIAY---------------GSSVKFWDA---------- 212 (334)
T ss_pred CceEEEEeccCcEEEE--EecCCCCcceeeccCCC-----EEEEec---------------CceeEEecc----------
Confidence 5788999999987665 45556788999999999 555541 124555664
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004149 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
.+-....-..-+..+.+.+.+|+-. ++....+ ...+|++|..+++.+..-
T Consensus 213 -------ksf~~lKs~k~P~nV~SASL~P~k~-~fVaGge----------d~~~~kfDy~TgeEi~~~------------ 262 (334)
T KOG0278|consen 213 -------KSFGLLKSYKMPCNVESASLHPKKE-FFVAGGE----------DFKVYKFDYNTGEEIGSY------------ 262 (334)
T ss_pred -------ccccceeeccCccccccccccCCCc-eEEecCc----------ceEEEEEeccCCceeeec------------
Confidence 2222211122344578889999874 3333322 356899999998864331
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..+.|. -+..+.|||||. ++.+.+.++..+||....
T Consensus 263 -nkgh~g-----pVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 263 -NKGHFG-----PVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred -ccCCCC-----ceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 001111 234567999997 888888999999998765
No 288
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.88 E-value=0.0053 Score=62.46 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=124.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....++|+-..++..+... ++.+|. .. ....+... | ++....++-.|.|++|+..++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~----h-----~~~V~~ls~h~tgeYllsAs~d~-- 325 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP----H-----EEPVTGLSLHPTGEYLLSASNDG-- 325 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc----c-----cccceeeeeccCCcEEEEecCCc--
Confidence 4577888999988776554433 667772 22 11112221 1 11225788889999998876553
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....|+.+|.. ..+..-..+......+|.|||
T Consensus 326 ------------------------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---- 359 (506)
T KOG0289|consen 326 ------------------------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---- 359 (506)
T ss_pred ------------------------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----
Confidence 222334444432 222101123457788999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++|..- ..++.|-++|+. ......++..+.+.+....||-+|=+||...
T Consensus 360 --Lifgtg-------------t~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 360 --LIFGTG-------------TPDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred --eEEecc-------------CCCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 666541 234577888872 3335666777788899999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
++. .+.+||+..-+..+. ++.+ +.+ .+.+++|-..|+.|... +....+
T Consensus 409 dd~-----------~V~lwDLRKl~n~kt----------~~l~--~~~------~v~s~~fD~SGt~L~~~---g~~l~V 456 (506)
T KOG0289|consen 409 DDG-----------SVKLWDLRKLKNFKT----------IQLD--EKK------EVNSLSFDQSGTYLGIA---GSDLQV 456 (506)
T ss_pred cCC-----------eEEEEEehhhcccce----------eecc--ccc------cceeEEEcCCCCeEEee---cceeEE
Confidence 764 288899865442111 0000 000 14466777788876654 456778
Q ss_pred EEEECCCCcEEEec
Q 004149 416 ISVNVSSGELLRIT 429 (771)
Q Consensus 416 ~~~d~~tg~~~~l~ 429 (771)
|.+.-.+.+.+.+.
T Consensus 457 y~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 457 YICKKKTKSWTEIK 470 (506)
T ss_pred EEEecccccceeee
Confidence 88887777766664
No 289
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.88 E-value=0.00026 Score=74.93 Aligned_cols=168 Identities=16% Similarity=0.180 Sum_probs=98.0
Q ss_pred CCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH--c
Q 004149 536 CDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G--~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 610 (771)
-.|+++++||.+...-...+ ..+...|.-.| ..|..+|++..-+ . ..-....+-++.+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 35889999998822212222 22333343333 4456677663211 0 0000112333333332222 2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCCc-eeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHH
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+......|.|+|.|||+.++.+......+. +.++|++.=..+ ..+ +. .+..+
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp------rgirD----- 297 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP------RGIRD----- 297 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc------cCCcc-----
Confidence 334567899999999988887776654443 555554421111 000 00 00011
Q ss_pred HHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004149 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
..+-.++.|+|++.|.+|..+++...+++.++++. .++++++.+++|.+.-
T Consensus 298 --------E~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmai 348 (784)
T KOG3253|consen 298 --------EALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAI 348 (784)
T ss_pred --------hhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccC
Confidence 12334689999999999999999999999998887 4889999999999874
No 290
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.88 E-value=0.00026 Score=68.46 Aligned_cols=281 Identities=12% Similarity=0.083 Sum_probs=149.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCC-cccccc---cCC-CcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQ-TVHGSV---YAD-GWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~g~~---~~~-~~~~~~~wSpDg~~la~~ 170 (771)
......+|||||..+|.-+.. .+-.++.+. .....+.+..... ..|-.| |.. +.+..+.|.|-+..|+..
T Consensus 113 ~~cR~aafs~DG~lvATGsaD--~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSAD--ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cceeeeeeCCCCcEEEccCCc--ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 446788999999988864432 122233332 1111111111100 001000 110 234789999999988888
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEE
Q 004149 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 247 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~w 247 (771)
+.+...+-..+.....+...+..........+.|-|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 8777655322221111111111111222234556666556677888899999999987654432 222 346889999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---CCCccccceee
Q 004149 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---ESISSAFFPRF 324 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~p~~ 324 (771)
|+.|+ |+.++. .++.|-++|= -++.+.+-. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666652 3346777773 344443221 23345889999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004149 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~ 404 (771)
+.+||+|.-...+ +-+++|.+.++.....-.+.... . ... ......|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~t-g------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGTT-G------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCcc-c------chh-------hhhhhhhcCccceEE
Confidence 9999988654444 34667777776653322111000 0 000 012334554545555
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCC
Q 004149 405 LSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGD 445 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~ 445 (771)
|- ......|..+|..++....+... .+...+...||.+.
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 33455688888777765555432 23345555555443
No 291
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.84 E-value=0.00012 Score=71.75 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHH--------HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
...|||+||..++ ...+......+ ....+.++..||..... . ..+.......+-+..+++.+.
T Consensus 4 g~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~ 74 (225)
T PF07819_consen 4 GIPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYIL 74 (225)
T ss_pred CCEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHH
Confidence 3569999996554 22333333222 12357889999875211 0 111111122344556666665
Q ss_pred HcC---CCCCCeEEEEEcChhHHHHHHHHHhCC---CceeEEEecC
Q 004149 609 DMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 648 (771)
Q Consensus 609 ~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~a~v~~~ 648 (771)
+.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 75 ~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 75 ELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 543 356789999999999999988876543 3567766544
No 292
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.83 E-value=0.00084 Score=64.93 Aligned_cols=161 Identities=11% Similarity=0.010 Sum_probs=96.0
Q ss_pred CceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 217 QPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 217 ~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+..|++|++.+... -.+ .-....+..+.|.+||.. |+-.+ .+.+++.+|.
T Consensus 68 Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------- 119 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------- 119 (338)
T ss_pred cceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec-------
Confidence 46899999765432 222 233446788999999997 77665 3348999998
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
++|+. ++...+...+.+..-+.-|-.|+-...++ .++.+||..+.+..+..+...+
T Consensus 120 ----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq--- 176 (338)
T KOG0265|consen 120 ----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ--- 176 (338)
T ss_pred ----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee---
Confidence 66654 44545555555555566677777666554 4688899887665444322222
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNII 448 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~ 448 (771)
+..+.|..++..+ ++..-++..++| |+..++..-+..+.. .+.....+++|..++
T Consensus 177 -----------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 177 -----------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred -----------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccc
Confidence 3356677777655 444444444555 554455554444433 333345566666543
No 293
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.83 E-value=0.0012 Score=64.17 Aligned_cols=232 Identities=13% Similarity=0.167 Sum_probs=134.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc--chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~--~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- +++++|+||-.|.-+.+... .. ....++.+.++ |.|+-+|-+|.-.-.. .++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gAp----~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGAP----SFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCCc----cCCCCCCCC
Confidence 477777642 23367889999985443211 11 12345666666 9999999998533222 233333333
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhh---------------hcCC
Q 004149 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~---------------~~~~ 660 (771)
..+++.+.+..+.+.. .-+-|.-+|--.|+++-..+|..||+++-++|++++......+ .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 4677777777776653 4567889999999999999999999999999999875432111 0111
Q ss_pred -CCCcchhhhhccCCCCCc-----------CCCCCChhhHHHH----hhcCccc-ccc----CCCCcEEEEeeCCCCccC
Q 004149 661 -DIPDWCYVESYGSKGKDS-----------FTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 661 -~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~P~Lii~G~~D~~vp 719 (771)
...++.+...++.+.... +.......+...+ ..+..+. ... .+++|+|++.|+.-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 111222223333322111 1111222222222 1222211 111 45699999999998877
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+...++..+|.. ..+.++.+.++|-.... +......+.+.-|+.
T Consensus 261 -~~vv~~n~~Ldp--~~ttllk~~d~g~l~~e-~qP~kl~ea~~~Flq 304 (326)
T KOG2931|consen 261 -SAVVECNSKLDP--TYTTLLKMADCGGLVQE-EQPGKLAEAFKYFLQ 304 (326)
T ss_pred -hhhhhhhcccCc--ccceEEEEcccCCcccc-cCchHHHHHHHHHHc
Confidence 566677666654 24778888888765543 233344555555543
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.83 E-value=0.0011 Score=66.64 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=95.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEe-cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws-pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+.++..+++.+.+. .+. ....++. +||+ |++.. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 378999999999877662 222 4455666 6654 54443 1 14555587
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004149 296 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+++.+.+... .......++.|||+ |+|.......... .....||+++.. ++...+....
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~~- 133 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADGL- 133 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEEE-
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecCc-
Confidence 66665544332 23467789999999 7777655321100 111568999876 3422211110
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CCcE---EEec-CCCC--CceeeEEe
Q 004149 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGEL---LRIT-PAES--NFSWSLLT 441 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~--tg~~---~~l~-~~~~--~~~~~~~s 441 (771)
. ....++|+||++.||++.+..+. ||+++++ ++++ +.+. .... ......++
T Consensus 134 ------------~-------~pNGi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 134 ------------G-------FPNGIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ------------S-------SEEEEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ------------c-------cccceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 1 13467899999989887654444 6666653 4422 2221 1111 12334555
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 6665 444433 44567777644
No 295
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.83 E-value=0.00092 Score=61.91 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCC-CCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 537 DPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~V~~~d~rG~~-~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.-.|||+-|-+..... .....+..+|-+.+|..+.+-.+.+. |||.. ....+.+|+..+++++...++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCc--
Confidence 3556777553322212 23345677888999999999988642 24432 223568999999998876542
Q ss_pred CCeEEEEEcChhHHHHHHHHHh--CCCceeEEEecCCccchh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 654 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~--~p~~~~a~v~~~p~~~~~ 654 (771)
...|+|+|||-|.+-.++++.+ .+..++++|+.+|+.|..
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 4589999999999999998843 256789999999999875
No 296
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.78 E-value=0.00082 Score=66.43 Aligned_cols=231 Identities=13% Similarity=0.202 Sum_probs=115.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004149 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-----~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+++.++-- ..+++|+||-.|--+.+.. ..|. ..++.+ ...|.|+-+|.+|..+-... ++..+.-
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh~-scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~y 79 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNHK-SCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQY 79 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--HH-HHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT---
T ss_pred EEEEEEEec----CCCCCceEEEeccccccch-HHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----ccccccc
Confidence 466666643 2336899999997443211 1122 233444 45699999999996542222 2222222
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhh---------------cC
Q 004149 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GT 659 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~---------------~~ 659 (771)
..++++.+.+..+.+.. .-+.+.-+|--+|+++-+.+|..+|+++.++|+++|......+. +.
T Consensus 80 Psmd~LAe~l~~Vl~~f--~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gm 157 (283)
T PF03096_consen 80 PSMDQLAEMLPEVLDHF--GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGM 157 (283)
T ss_dssp --HHHHHCTHHHHHHHH--T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CT
T ss_pred cCHHHHHHHHHHHHHhC--CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccccccccc
Confidence 33555555555555542 23579999999999999999999999999999999866432110 01
Q ss_pred CCC-CcchhhhhccCCCC-----------CcCCCCCChhhHHHH----hhcC-ccccccCCCCcEEEEeeCCCCccCcHH
Q 004149 660 TDI-PDWCYVESYGSKGK-----------DSFTESPSVEDLTRF----HSKS-PISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~s-p~~~~~~i~~P~Lii~G~~D~~vp~~~ 722 (771)
+.. .+......++.... ..+.....+.+...+ ..+. .....+...+|+|++.|+.-+.+ +.
T Consensus 158 t~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~ 235 (283)
T PF03096_consen 158 TSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DD 235 (283)
T ss_dssp TS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HH
T ss_pred ccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hh
Confidence 100 01111111111000 000011111111111 1111 11234556799999999999887 77
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 723 GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.++..+|.. .+.+++.++++|=... .+......+.+.-|+.
T Consensus 236 vv~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 236 VVEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred HHHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 7888888854 3589999998865433 3344455555555554
No 297
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.76 E-value=0.00026 Score=70.68 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=74.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc----c-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS----Y-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~----~-~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~ 591 (771)
|+..+.+..+.-+ ..++..-|++.-|.+....... . .......-+.|..|+.+||||.+.+-+ ..+
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G------~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTG------PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCC------CCC
Confidence 6788888777632 2345567888888544322100 1 223344457899999999999543311 111
Q ss_pred ccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHHhC
Q 004149 592 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 637 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 637 (771)
....+.|..+.++||.++. .+.+++|.+.|||.||.++..++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788889999998743 36889999999999999998876654
No 298
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.0015 Score=67.43 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|-.||+.+|-- + ..|.-++|.+....-.+.+-.....+ ....|+|++..++..+.+.
T Consensus 69 ~~v~s~~fR~DG~LlaaG-D-~sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAG-D-ESGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEcc-C-CcCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 457888999999988752 2 11333333311100111111112233 3778999888776654432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+-.||+.+..+ +++-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 4567788888876 3321445557888899999998 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEecC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++++- .+..|..+|+ .+...+.+ .++...+.+..+-|.|+.|+..+
T Consensus 169 vvtGs--------------YDg~vrl~Dt-----------------R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-- 215 (487)
T KOG0310|consen 169 VVTGS--------------YDGKVRLWDT-----------------RSLTSRVVELNHGCPVESVLALPSGSLIASAG-- 215 (487)
T ss_pred EEecC--------------CCceEEEEEe-----------------ccCCceeEEecCCCceeeEEEcCCCCEEEEcC--
Confidence 88872 2235666665 22212222 23455688999999999888654
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
++.+.+||+.+|......... +.-.+..+++..|+.+|+ +..-++..++|.
T Consensus 216 ----------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd 266 (487)
T KOG0310|consen 216 ----------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKVFD 266 (487)
T ss_pred ----------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEEEE
Confidence 356899999865542211110 001234556777887774 555566667774
Q ss_pred EECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004149 418 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 418 ~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~ 455 (771)
..+-++. .+.-+. .+-...+++|+..++.-.++..
T Consensus 267 --~t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 3232322 222222 2344677888888877665543
No 299
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.012 Score=63.06 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=115.8
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...+.++|..+.+...- .+-......++++||++. ++... . .+++..+..+|-
T Consensus 95 ~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~-----------~~~~~~vsvid~--------- 147 (381)
T COG3391 95 SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-A-----------GNGNNTVSVIDA--------- 147 (381)
T ss_pred CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-c-----------ccCCceEEEEeC---------
Confidence 36788899776665444 333336778999999997 66553 1 113457888886
Q ss_pred hhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004149 297 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.++...............+++|||++++..... ...|.++|..+....+ .... ...
T Consensus 148 --------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~~~~-~~~---- 203 (381)
T COG3391 148 --------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-GSVG-SLV---- 203 (381)
T ss_pred --------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-cccc-ccc----
Confidence 444433222222233778999999987666522 3568888865544322 1100 000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeCC
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~d~~~l~~~~s~~ 454 (771)
..+ .......+++||+++++.........+..+|..++.+........ .......+|+|+.++.....
T Consensus 204 ----~~~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 204 ----GVG-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ----ccC-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 001 124567899999988777654444689999999988887632222 23346788999988877655
Q ss_pred CCCCeEEEEEec
Q 004149 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
...+++++..
T Consensus 274 --~~~V~vid~~ 283 (381)
T COG3391 274 --GGTVSVIDGA 283 (381)
T ss_pred --CCeEEEEeCC
Confidence 5667777654
No 300
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.74 E-value=0.0013 Score=67.63 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=118.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCC-Chhhh---------
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEAL--------- 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~V~~~d~rG~~~~-g~~~~--------- 585 (771)
++.++- .+|+|.. ..+...+||++||-+....+. ....+-..|.+.|+.++++..+.-... -....
T Consensus 70 ~~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 344454 4666653 556678999999966554433 334455678999999999887751100 00000
Q ss_pred --hcCCCC-----------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEE
Q 004149 586 --QSLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 645 (771)
Q Consensus 586 --~~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v 645 (771)
...... .-.....-+.+++.++.+++ ..+|+|+||..|+++++.+....+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000000 00011233445566666664 3559999999999999999987654 478888
Q ss_pred ecCCccchhhhhcCCCCCcchhhhhccCCCCCcCCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHH
Q 004149 646 ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 646 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 725 (771)
++++..... .. .......+.+++.|+|=|++.....+ .....
T Consensus 224 ~I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~~~~~--~~~a~ 265 (310)
T PF12048_consen 224 LINAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSADNPAS--QQTAK 265 (310)
T ss_pred EEeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCCChHH--HHHHH
Confidence 887753110 00 00112345678899999998873322 22222
Q ss_pred HHHHH-HhC-CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 726 YARAL-REK-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 726 ~~~~l-~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+.+ ++. ....+-+.+.+..|..... .....++|..|++++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~~--~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSGW--QEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhhH--HHHHHHHHHHHHHhh
Confidence 22222 222 2345666666666644322 223788999999875
No 301
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.74 E-value=0.0017 Score=63.53 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred cccccCCcCcccCCccCceEEEEEc-cCCceeec-c-CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l-~-~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...|++| |+++....+..|.++|+ ..|.--.+ + -+.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3456777 44444445678888887 33432111 1 0111 2356778999965541 55544
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
+.+...||..+ ..+.+..|-.+.+.+....|-+||.+|+..++. +..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk----------~dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK----------DDKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccC----------CCeEEE
Confidence 22333566665 455566677778889999999999988544433 356888
Q ss_pred eecCC
Q 004149 354 IDWPT 358 (771)
Q Consensus 354 ~d~~~ 358 (771)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 88754
No 302
>COG3150 Predicted esterase [General function prediction only]
Probab=97.72 E-value=0.00062 Score=60.28 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccch-hhhhcCCCCCc-chhhhhccCC
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPD-WCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~ 674 (771)
...+.+-++.++++. . ....+|+|.|.||+.+.+++.++. ++++ +.+|.+.. ..+.+.-+.+. |..-+.+-
T Consensus 42 p~~a~~ele~~i~~~-~-~~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~-- 114 (191)
T COG3150 42 PQQALKELEKAVQEL-G-DESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYV-- 114 (191)
T ss_pred HHHHHHHHHHHHHHc-C-CCCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEE--
Confidence 344455555555543 1 234899999999999999998864 4444 44554422 12211111111 00000000
Q ss_pred CCCcCCCCCChhhHHHHhhcCccccccCCCCc-EEEEeeCC-CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004149 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~-D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. ......... ......++.| .|.+.... |.+....++.+.+... ...+..|.+|.|...
T Consensus 115 -----l---e~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f 175 (191)
T COG3150 115 -----L---ESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGF 175 (191)
T ss_pred -----e---ehhhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccch
Confidence 0 001111111 1223344444 55555444 9998877777776665 345778899998754
Q ss_pred CChHHHHHHHHHHHH
Q 004149 753 QSDFESFLNIGLWFK 767 (771)
Q Consensus 753 ~~~~~~~~~i~~wl~ 767 (771)
. ..++.|..|..
T Consensus 176 ~---~~l~~i~aF~g 187 (191)
T COG3150 176 S---RHLQRIKAFKG 187 (191)
T ss_pred H---HhHHHHHHHhc
Confidence 3 45778888764
No 303
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.72 E-value=0.00041 Score=69.30 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=58.6
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004149 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 702 ~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl 766 (771)
...+|-|.+.++.|.+++.++.+++.+..++.|.+++...+++..|.-....+..++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 44689999999999999999999999999999999999999999998777777788888888763
No 304
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.71 E-value=0.0011 Score=71.84 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=115.6
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCcceE--------EEecCCcccccccCCCcccceeecC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEK--------EFHVPQTVHGSVYADGWFEGISWNS 162 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~wSp 162 (771)
.+.++..+.+|||+..+..+.+. ...+|+ .|..++ .+.++..+ .++++||
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv----------L~v~~Sp 518 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV----------LCVSVSP 518 (888)
T ss_pred ccceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeeccceEEeccccE----------EEEEEcC
Confidence 35688899999999998765543 333441 233323 23333343 6999999
Q ss_pred CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCc
Q 004149 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLS 241 (771)
Q Consensus 163 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~ 241 (771)
||+.||..--+ +.+-++=+++=+... | -.....
T Consensus 519 dgk~LaVsLLd--------------------------------------------nTVkVyflDtlKFflsL--YGHkLP 552 (888)
T KOG0306|consen 519 DGKLLAVSLLD--------------------------------------------NTVKVYFLDTLKFFLSL--YGHKLP 552 (888)
T ss_pred CCcEEEEEecc--------------------------------------------CeEEEEEecceeeeeee--cccccc
Confidence 99999886322 233333333333222 2 234456
Q ss_pred cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcccc
Q 004149 242 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 320 (771)
Q Consensus 242 ~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~ 320 (771)
+.....|||++- |+..+ .+++-.||=+|+ |.+ +-+..+..++.
T Consensus 553 V~smDIS~DSkl----ivTgS-------------ADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm 596 (888)
T KOG0306|consen 553 VLSMDISPDSKL----IVTGS-------------ADKNVKIWGLDF-------------------GDCHKSFFAHDDSVM 596 (888)
T ss_pred eeEEeccCCcCe----EEecc-------------CCCceEEecccc-------------------chhhhhhhcccCcee
Confidence 778899999997 77665 345557888876 554 45677788899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
++.|-|+ ..+.|....+ ..+..||-..=+..+...+. .. -+.-.+-+|+|
T Consensus 597 ~V~F~P~-~~~FFt~gKD----------~kvKqWDg~kFe~iq~L~~H--------------~~-----ev~cLav~~~G 646 (888)
T KOG0306|consen 597 SVQFLPK-THLFFTCGKD----------GKVKQWDGEKFEEIQKLDGH--------------HS-----EVWCLAVSPNG 646 (888)
T ss_pred EEEEccc-ceeEEEecCc----------ceEEeechhhhhhheeeccc--------------hh-----eeeeeEEcCCC
Confidence 9999995 5677777654 24556653322211111110 00 12234568999
Q ss_pred CEEEEEeeeCCeeEEEE
Q 004149 401 CTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~ 417 (771)
. .+++++.+...++|.
T Consensus 647 ~-~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 647 S-FVVSSSHDKSIRLWE 662 (888)
T ss_pred C-eEEeccCCceeEeee
Confidence 8 456777666777775
No 305
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.70 E-value=0.0016 Score=65.24 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=87.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+++||||+.+|++.. .++...++....++....+... .. +..++|++||...++.. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~-~~~~~~L~~~~~~~~~~~~~~g-~~----------l~~PS~d~~g~~W~v~~-~~----- 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE-GDGGRSLYVGPAGGPVRPVLTG-GS----------LTRPSWDPDGWVWTVDD-GS----- 86 (253)
T ss_pred cccceEECCCCCeEEEEEE-cCCCCEEEEEcCCCcceeeccC-Cc----------cccccccCCCCEEEEEc-CC-----
Confidence 5788999999999999983 2255667766655554444321 12 26999999976444432 11
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCC-ccceEEEecCCCCCcc
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSL-SVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~-~~~~~~wspDg~~~~~ 256 (771)
.....+.+...++ ...+. .+... .+..+.+||||.+
T Consensus 87 -------------------------------------~~~~~~~~~~~g~~~~~~v~-~~~~~~~I~~l~vSpDG~R--- 125 (253)
T PF10647_consen 87 -------------------------------------GGVRVVRDSASGTGEPVEVD-WPGLRGRITALRVSPDGTR--- 125 (253)
T ss_pred -------------------------------------CceEEEEecCCCcceeEEec-ccccCCceEEEEECCCCcE---
Confidence 0112222323333 33332 22222 6889999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC------cceecC-CCCccccceeecCCCC
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL------PVVNLT-ESISSAFFPRFSPDGK 329 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~lt-~~~~~~~~p~~SpDG~ 329 (771)
++++....+ ..+||+.-+... ..+ ....+. .....+.+..|+++++
T Consensus 126 -vA~v~~~~~------------~~~v~va~V~r~--------------~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 126 -VAVVVEDGG------------GGRVYVAGVVRD--------------GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred -EEEEEecCC------------CCeEEEEEEEeC--------------CCCCcceeccceEecccccCcceeeeecCCCE
Confidence 999873322 236666654211 222 122222 2234578899999998
Q ss_pred EEEEEecC
Q 004149 330 FLVFLSAK 337 (771)
Q Consensus 330 ~l~f~~~~ 337 (771)
.++.....
T Consensus 179 L~V~~~~~ 186 (253)
T PF10647_consen 179 LVVLGRSA 186 (253)
T ss_pred EEEEeCCC
Confidence 55554433
No 306
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.68 E-value=0.00033 Score=72.68 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=40.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
+.+..-.|||||.-|+.+.+++ +..+| ..|-.+.. .+....+ .+.+|.|+...|+|-
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEe
Confidence 4577789999999998765544 88999 44443322 2222333 699999999999996
No 307
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.014 Score=56.58 Aligned_cols=237 Identities=12% Similarity=0.050 Sum_probs=116.2
Q ss_pred ceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 101 ASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++|.-.+ ++|.+..+ ...+.++ .+.+...+.....+.| .|+--.|||||+ ++|..+....
T Consensus 70 ~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~-~LYATEndfd-- 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGR-LLYATENDFD-- 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCc-EEEeecCCCC--
Confidence 345678886554 55554433 2233444 3333333333333333 234557999998 5566554321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCccE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|-++|... ...++-. ........++.|.+||+.
T Consensus 137 ------------------------------------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrt---- 175 (366)
T COG3490 137 ------------------------------------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRT---- 175 (366)
T ss_pred ------------------------------------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcE----
Confidence 1457888898763 3444411 223446678999999997
Q ss_pred EEEEee--cCcc--eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecC--CCCccccceeecCCC
Q 004149 258 LVFVGW--SSET--RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLT--ESISSAFFPRFSPDG 328 (771)
Q Consensus 258 l~~~~~--~~~~--~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt--~~~~~~~~p~~SpDG 328 (771)
|+...- +..+ .|.-+..+... ..|.++|. .+|++ ..|. ....+++....-+||
T Consensus 176 lvvanGGIethpdfgR~~lNldsMe-PSlvlld~-----------------atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSME-PSLVLLDA-----------------ATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred EEEeCCceecccccCccccchhhcC-ccEEEEec-----------------cccchhhhccCchhhhhcceeeeeeCCCC
Confidence 766532 1111 11111112222 24667774 33432 2333 223457888889999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
+ ++|..+-. |+.+....|.-.-..++..+.+...+.... .|. ..+.+++-..+...+.+++.
T Consensus 238 t-vwfgcQy~----G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---------~~a----nYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 238 T-VWFGCQYR----GPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---------AFA----NYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred c-EEEEEEee----CCCccCCcceeeccCCCcCcccCCCHHHHH---------HHH----hhhhheeecccCCeEEEecC
Confidence 8 44544332 433333344433333333222211110000 010 11334444444444555544
Q ss_pred eCCeeEEEEEECCCCcEEEec
Q 004149 409 WGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+ +..+.+|.+||.+....
T Consensus 300 ~G--N~~vi~da~tG~vv~~a 318 (366)
T COG3490 300 RG--NRAVIWDAATGAVVSEA 318 (366)
T ss_pred CC--CeEEEEEcCCCcEEecc
Confidence 33 34566799999988654
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.66 E-value=0.0056 Score=63.71 Aligned_cols=170 Identities=12% Similarity=0.194 Sum_probs=98.4
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEe-c-CCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEec
Q 004149 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELW-S-QSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|||- +..|||..-...+......++ - .+.....-.+ ..++ .+.|.+.|+.|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----------qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----------QLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----------EEEEecCCceEEEEEE
Confidence 45788999996 445677654443444444444 1 1221111111 2233 7899999999999876
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....... .+ . +...||++++....++.. ..-...+.+++|+|+++
T Consensus 243 t~~ksnK-----------------sy---------f-------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSNK-----------------SY---------F-------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeeccc-----------------ce---------e-------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 5431100 00 0 237899999885544443 23345688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004149 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
+ .+.++-. .+..+-..|+ .+. ++-. .....-..+.|||.+++|+
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~N-l~~~-~Pe~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGN-LRFY-FPEQKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccc-eEEe-cCCcccccccccCcccEEE
Confidence 9 7776511 2234555565 223 2211 1222234578999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+..-+.. ...+-++|..+
T Consensus 332 ~agF~nl--------~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDNL--------QGNIEIFDPAG 349 (561)
T ss_pred EecCCcc--------ccceEEeccCC
Confidence 9776542 33466676544
No 309
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.0097 Score=64.05 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=100.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++|.+.++||..+..+ .+++| .+--...++..+. |..+.+++|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~--------drsIE~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPE--------DRSIESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCC--------CCceeeEEEccCC-eEEeec----
Confidence 4578899999999999877655 56777 2223334444422 2234799999555 454431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|.-||+.+++.+.-. -.....+.+.+.+|-++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3468899999988876552 223335667777787775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
++.. |.+. .|+.++. ..+.. +.|-...+.+.+..|+|+|.+|+
T Consensus 125 --l~Ig-------------cddG--vl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIG-------------CDDG--VLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEee-------------cCCc--eEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 5544 3332 6776665 44432 22333346688999999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
-.+.+ ..|.+||+..+..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3478888877664
No 310
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.63 E-value=0.00015 Score=69.75 Aligned_cols=90 Identities=24% Similarity=0.435 Sum_probs=53.6
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|||+||.... ....|......|.++||. |++++|-..... ....... .....+.++.++|+.+.+. ...
T Consensus 3 PVVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 3 PVVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp -EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred CEEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 38999996542 256788999999999999 899998542210 1111000 1112246777888877765 345
Q ss_pred CeEEEEEcChhHHHHHHHHHh
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+|-|+||||||.++-+++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999888753
No 311
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.62 E-value=0.00025 Score=77.68 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh------cCCCCccccchhhHHHHHHHHH
Q 004149 537 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~------~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
.|++|++-| -+..... ..........+.|-.|++.++|- ||.+... .+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 688887755 2221100 11122333457799999999997 6665421 1111122345789999999998
Q ss_pred HcC-CCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccc
Q 004149 609 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 609 ~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~ 652 (771)
.+. ..+..+++++|.|+||.+|+++-.++|+.+.++++.++++.
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 23556999999999999999999999999999888777553
No 312
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.0031 Score=61.49 Aligned_cols=185 Identities=10% Similarity=0.084 Sum_probs=104.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+..||+.|.+||... .+..+.+||..|-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc--------------------------------------------~nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC--------------------------------------------ANGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeec--------------------------------------------cCCcEEEEEccccchhhhh-
Confidence 4889999999998853 3467899999887765552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+.+++||+||+. |+..+ ++..|-.+|+ -.|. ..++.
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl-----------------~~gs~l~rir- 104 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDL-----------------LKGSPLKRIR- 104 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEec-----------------cCCCceeEEE-
Confidence 334457889999999998 88776 3346777887 3333 33332
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
-...+....|.|-.+..+....-+ .+-+++++.....+.+..+. +++.. .+....
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~----------~sp~vi~~s~~~h~~Lp~d~-----------d~dln----~sas~~ 159 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIME----------ESPVVIDFSDPKHSVLPKDD-----------DGDLN----SSASHG 159 (405)
T ss_pred ccCccceeeeccccCCeEEEEEec----------CCcEEEEecCCceeeccCCC-----------ccccc----cccccc
Confidence 123456667777554443333222 11334444433332222221 11110 011223
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEE---EecCCCCCceeeEEeecCCEEEEEE
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.|.+-|++|+. .+.. ..|..++..|-+.. +++.. ..+-...++..|+.+++-.
T Consensus 160 ~fdr~g~yIit-GtsK--Gkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 160 VFDRRGKYIIT-GTSK--GKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred cccCCCCEEEE-ecCc--ceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEec
Confidence 47788987753 3333 44555566555433 33331 2345567888888776544
No 313
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.62 E-value=0.0002 Score=70.84 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=87.1
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|+++|+..+.+..- .--...-..++|+| +. ..|++ .+.+..||.+|.-
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 457899999987765332 12223455789999 33 66665 2345589999971
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.-..+..+. ++...+.++.|||.|+.++-.+-+. .|.++....+..+.+-....
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtkR----- 314 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTKR----- 314 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHhh-----
Confidence 112222222 3344688999999999998777664 36666665555433211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...+..+.||-|+++| ++.+.+++.+||.-+.
T Consensus 315 -------------Mq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 315 -------------MQHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred -------------hheeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 1134567899999855 7778888899998654
No 314
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.61 E-value=6e-05 Score=78.01 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch-HHHHHH-HH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004149 534 CSCDPLIVVLHGGPHSVSLSSYS-KSLAFL-SS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~-~~~~~l-a~--~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
+...|++|++||.........|. .....+ .. ..+.|+++|+..... ..+..... ........+...|..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~--~~Y~~a~~--n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGAS--NNYPQAVA--NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHS--S-HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhcc--ccccchhh--hHHHHHHHHHHHHHHHHh
Confidence 44689999999966554223333 344434 33 589999999863110 00000000 000112344455667765
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCCcc
Q 004149 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p~~ 651 (771)
...++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 445789999999999999999988887665 788888877754
No 315
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.61 E-value=0.0012 Score=68.94 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=86.3
Q ss_pred cCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 212 YAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+.+....+++++|....++.+|-+ .-...++....|-|.++. ++.++... | +||.+|..
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~s-----G---------nlyly~~~ 250 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHAS-----G---------NLYLYDKE 250 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc----eEEEEEec-----C---------ceEEeecc
Confidence 334455677777766555544410 112236677899998888 77776322 2 34444320
Q ss_pred c---------c-cchhhhhhhhcCCC--CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004149 289 L---------Y-KSEASELELKESSS--EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 289 ~---------~-~~~~~~~~~~~~~~--~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
- + .++....++.+.+. .-..+.+..-..+.+....|||||++||.++++. -|.++|.
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~f 319 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDF 319 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCc-----------eEEEeec
Confidence 0 0 00001111111110 1122233333455788899999999999999884 2666666
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+.+..-+.. ..|- ++--++||||||+|+ +...++-..+|.+.
T Consensus 320 dt~eLlg~mk--------------SYFG-----GLLCvcWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 320 DTQELLGVMK--------------SYFG-----GLLCVCWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred cHHHHHHHHH--------------hhcc-----ceEEEEEcCCccEEE-ecCCcceEEEEEec
Confidence 6644322111 1232 345679999999764 44456666777664
No 316
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.61 E-value=0.0059 Score=66.90 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.0
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+-++|.++-++..- +.-........++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 46677788887654332 122224566789999996 66554
No 317
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.60 E-value=0.0054 Score=66.57 Aligned_cols=296 Identities=10% Similarity=0.047 Sum_probs=149.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCC-----CCeEEEEe
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSD-----ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-----g~~la~~~ 171 (771)
..+....+++|+..++++..+. +..+|+- .+..++..+..... +..+-++ |.++..++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~E----------~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESLE----------SVVRLREELGGKGEYIITAG 257 (775)
T ss_pred hheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhee----------eEEEechhcCCcceEEEEec
Confidence 4578899999999998875544 8888843 23333444433332 3333333 33444444
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCC-CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE-Eec
Q 004149 172 EEPSPSKPTFSLGSTKGGSSDKDCN-SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV-WAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~-wsp 249 (771)
+....+ +|.........+..... .-.....+.+.-+..+......+|+++|.++.++..-. ...+..+.+.. |-|
T Consensus 258 ~~g~~~--~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-vG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 258 GSGVVQ--YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-VGYNDEILDMKFLGP 334 (775)
T ss_pred CCceEE--EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh-cCCchhheeeeecCC
Confidence 333221 22211111111000000 00111122222233333445688999998887764431 22223344554 567
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.+. |+..+|. .+|.++++ .+..+.-+..+...+.+...+-+|-
T Consensus 335 e~~~----laVATNs---------------~~lr~y~~-----------------~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 335 EESH----LAVATNS---------------PELRLYTL-----------------PTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred ccce----EEEEeCC---------------CceEEEec-----------------CCCceEEEeCchhheeeeeecccCc
Confidence 7776 7776632 24555576 5566666666666666666444555
Q ss_pred EEEEEecCCCCCCCCccccccceeeecC-----------------------C-CCCCCCccceeeEEecccccC--CCCC
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWP-----------------------T-NGNFSSLEKIVDVIPVVQCAE--GDCF 383 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~-----------------------~-~~~~~~~~~~~~~~~~~~~~~--~~~f 383 (771)
.|+..+.+. ...||++|-. . +....++...+-++++|..++ +..+
T Consensus 379 llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 379 LLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 555444432 1233433111 1 111123334445677777665 2233
Q ss_pred ccc---------ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCceeeEEeecCCEEEEEEeC
Q 004149 384 PGL---------YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 384 ~g~---------~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~d~~~l~~~~s~ 453 (771)
|-. ++-.+..++.+|+.+ |+.+.+.+....||.++ .+.+.-...+ .-.+....|++..+ +++++|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~Sg 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSG 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccccc-eeEeccC
Confidence 321 233466788999987 77888888888999776 3444433333 22444456776544 5555544
Q ss_pred CCCCCeEEE
Q 004149 454 PVDVPQVKY 462 (771)
Q Consensus 454 ~~~p~~l~~ 462 (771)
- ..-.||-
T Consensus 526 D-~TvKIW~ 533 (775)
T KOG0319|consen 526 D-KTVKIWS 533 (775)
T ss_pred C-ceEEEEE
Confidence 3 3333443
No 318
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.60 E-value=7.5e-05 Score=50.29 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.1
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCC
Q 004149 310 VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++........|.|||||++|+|.+++.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777888899999999999999999885
No 319
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.60 E-value=0.00054 Score=67.89 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=127.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-c---eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-L---EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+..++|+..|+.||-.+.+- . ..+|+-.+ . +.+...... ++.+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~----------vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHG----------VSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccc----------eeeEEEEecCCeeeeccccc
Confidence 4588899999999998765432 1 34452221 1 111111222 26889999999998888777
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
+.+ .|....+-.......+..|..-+....|+.-..+......|.+|-+++++.+.+. ...+..+.-.+|.|....-
T Consensus 216 tik--~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIK--AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred cee--EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 654 3443334444455556667777777777555555667789999999998654442 2334445556666653220
Q ss_pred ccEEEEEeecCcceeeeeeee--ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYC--YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.|-+.+ +...|..+| ..++..|-.+|+ .++. +-.|..+..-+++.+|||-|++|
T Consensus 293 --~i~~at----~~~~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEAT----GSTNGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhcc----CCCCCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011100 000000111 124456777787 5554 35566677779999999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+-...+. .|.+||+++.+-
T Consensus 350 ~ScaDDk-----------tlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADDK-----------TLRVWDLKNLQC 368 (406)
T ss_pred EEEecCC-----------cEEEEEecccee
Confidence 8887664 488999887654
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.59 E-value=0.018 Score=58.42 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=70.4
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-----ec-CC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----NL-TE 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~l-t~ 314 (771)
-...+.++.++.+ ++|++ ..+.||.+|+. +...+ .+ +.
T Consensus 185 ~f~~~~~~~~~~~----~~F~S---------------y~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVS---------------YEGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEB---------------TTSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEe---------------cCCEEEEEecc-----------------CCcccccCcccccCc
Confidence 3456778888877 99988 34589999983 22211 11 11
Q ss_pred C-------CccccceeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004149 315 S-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 315 ~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
. .+...-.++++..+.|+.+-+... .|.|. ...+||++|+++++...-..-..
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 0 111223567776666665544321 23332 23589999999876522111000
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 387 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
...++..|.|.+-++|..+. +...|+.+|..+|+..+-...-+
T Consensus 290 ---~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ---PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ---EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE---S
T ss_pred ---ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhccC
Confidence 01245678888867666543 44578889999998876655444
No 321
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.58 E-value=0.0018 Score=71.26 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=108.2
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004149 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
.+.+...+||.++- |+-.+-++ ...+|.-+ +..+++....-+ .+++|.| |.++++-.+-
T Consensus 369 t~DILDlSWSKn~f-LLSSSMDK-----TVRLWh~~~~~CL~~F~HndfV----------TcVaFnPvDDryFiSGSL-- 430 (712)
T KOG0283|consen 369 TADILDLSWSKNNF-LLSSSMDK-----TVRLWHPGRKECLKVFSHNDFV----------TCVAFNPVDDRYFISGSL-- 430 (712)
T ss_pred chhheecccccCCe-eEeccccc-----cEEeecCCCcceeeEEecCCee----------EEEEecccCCCcEeeccc--
Confidence 35678888888763 43443333 46666222 223344333333 6999999 6666655332
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
+.-+.+|++...++..- ..-...+..++++|||+.
T Consensus 431 ------------------------------------------D~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~- 465 (712)
T KOG0283|consen 431 ------------------------------------------DGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKG- 465 (712)
T ss_pred ------------------------------------------ccceEEeecCcCeeEee--hhhhhhheeEEeccCCce-
Confidence 35677788777766555 444457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEe-cccccchhhhhhhhcCCCCCCcceecCCC----CccccceeecCCC-
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVR-VSLYKSEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDG- 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~lt~~----~~~~~~p~~SpDG- 328 (771)
.+..+ +++.+.+|... +.- .......+... ...+....|.|-.
T Consensus 466 ---avIGt-------------~~G~C~fY~t~~lk~---------------~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 466 ---AVIGT-------------FNGYCRFYDTEGLKL---------------VSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred ---EEEEE-------------eccEEEEEEccCCeE---------------EEeeeEeeccCccccCceeeeeEecCCCC
Confidence 55544 33434444321 000 00001111110 1135556665432
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEe
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~dg~~l~~~~ 407 (771)
+.|+.++++ ++|.++|+........ |.|.... +.....|+.||++|+..+
T Consensus 515 ~~vLVTSnD-----------SrIRI~d~~~~~lv~K------------------fKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 515 DEVLVTSND-----------SRIRIYDGRDKDLVHK------------------FKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CeEEEecCC-----------CceEEEeccchhhhhh------------------hcccccCCcceeeeEccCCCEEEEee
Confidence 256677765 4689998755444322 2222111 234567999999998776
Q ss_pred eeCCeeEEEEE
Q 004149 408 IWGSSQVIISV 418 (771)
Q Consensus 408 ~~~~~~~l~~~ 418 (771)
.+....||.+
T Consensus 566 -eDs~VYiW~~ 575 (712)
T KOG0283|consen 566 -EDSWVYIWKN 575 (712)
T ss_pred -cCceEEEEeC
Confidence 5555556654
No 322
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.57 E-value=0.011 Score=61.51 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
....+++|.++.....+ ......+.-+.+||||.. |+..+ .+..||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~--~~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTI--HTDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEE--EecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 46789999998776666 333556778899999998 88876 222555555421
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 297 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++....++-... ..+....||+|+++|.-.+.+ .+|..| ..++..+++.-.+.--...
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d-----------~eiLyW--~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD-----------YEILYW--KPSECKQITSVKDVKWATY 537 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc-----------eEEEEE--ccccCcccceecceeeeee
Confidence 333444443222 457889999999987654432 456555 3444444443111000000
Q ss_pred cccCC-CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 376 QCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~-~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.+.-. .-|-|.....+...+-|.+.+ |+.+....+..+||++...
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC
Confidence 00000 001111222233445555655 5566666778888887653
No 323
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.57 E-value=0.018 Score=59.83 Aligned_cols=259 Identities=13% Similarity=0.124 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|.++|+-|. . ++...+.+| .++. ..+... ...|. +.++.---||+.|- ...+.
T Consensus 247 k~Vl~v~F~engdviT--g----DS~G~i~Iw~~~~~~~~k~~~---aH~gg------v~~L~~lr~GtllS-GgKDR-- 308 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVIT--G----DSGGNILIWSKGTNRISKQVH---AHDGG------VFSLCMLRDGTLLS-GGKDR-- 308 (626)
T ss_pred eEEEEEEEcCCCCEEe--e----cCCceEEEEeCCCceEEeEee---ecCCc------eEEEEEecCccEee-cCccc--
Confidence 4578889999998663 1 333467778 3332 222221 11112 25777888887554 22221
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+...|+....+.... +-+......-..-+..++.+++..++.|..=.++++-...+. -.......++-.|+...
T Consensus 309 ki~~Wd~~y~k~r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q--- 382 (626)
T KOG2106|consen 309 KIILWDDNYRKLRET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQ--- 382 (626)
T ss_pred eEEeccccccccccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhh---
Confidence 223344222211111 111111111112233355777777777777777666443331 11224556777888776
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++..+- ..++.+++- .--+-.++.. .......|.|-| .|+....
T Consensus 383 -~~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 383 -LLTCGQ---------------DKHVRLWND-----------------HKLEWTKIIE--DPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred -eeeccC---------------cceEEEccC-----------------CceeEEEEec--CceeEeeccCcc-eEEEeec
Confidence 665541 123444431 1122233333 235667899999 6765543
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~ 416 (771)
. .+.+++|.++.....+-... ..+.-+.++|||..|++ .+.++...||
T Consensus 427 ~-----------G~w~V~d~e~~~lv~~~~d~--------------------~~ls~v~ysp~G~~lAv-gs~d~~iyiy 474 (626)
T KOG2106|consen 427 T-----------GRWFVLDTETQDLVTIHTDN--------------------EQLSVVRYSPDGAFLAV-GSHDNHIYIY 474 (626)
T ss_pred c-----------ceEEEEecccceeEEEEecC--------------------CceEEEEEcCCCCEEEE-ecCCCeEEEE
Confidence 3 35778887764332211110 12456789999997654 4567778899
Q ss_pred EEECCCCcEEEecCCCC-CceeeEEeecCCEEEE
Q 004149 417 SVNVSSGELLRITPAES-NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~-~~~~~~~s~d~~~l~~ 449 (771)
+++.++.+..++-.-.+ .+....||+|++.+.-
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 99987766666643332 3344578888886653
No 324
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.56 E-value=0.0072 Score=69.19 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=124.6
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
....+..+|+|+.++|+...-+ ....+|... +...+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSD--GKTVRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEe--cccccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4667899999999999987511 223344322 1111122212222 5899999999999986222
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
. ...++|+++.. + .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 1 24789999988 4 33 233446677899999999
Q ss_pred ccEEEEEeecCcceeeee----------eeec-c-CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccce
Q 004149 255 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 322 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p 322 (771)
+++..-.....+.+. .+.. . ...++|.+|. ++ ....+......+..+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 998432222111111 1111 1 3457888886 33 555555566667778
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
+++++++.++......... ......+.....++....++.+.. +...+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDAD----PWVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccC----CceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 8888888777776654200 111222333223333322222211 2346678899997
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEE
Q 004149 403 MLLSSIWGS-----SQVIISVNVSSGELLR 427 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~ 427 (771)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 776665332 1235555534444444
No 325
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.56 E-value=0.005 Score=69.73 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=60.6
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEE-EecCCCCCCCCccCCCCC
Q 004149 111 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 187 (771)
.+|||+.+.. + .+..++ ++.+.+.+ +.....+ -.|.|||||++||| ++.....
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4789987643 1 688888 55565555 4443333 48999999999999 6544311
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004149 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+.+.||+.|+.+.. +..|. -....+-.......|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 34779999987643 33441 122233334446777764 8888743
No 326
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.55 E-value=0.0011 Score=65.83 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=140.0
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeecc
Q 004149 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVK 234 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~ 234 (771)
..-+.|+...++..+++.+.+ .|+...+........+..-..++.|...+.....-..+-.+.+||.++- ..+.+
T Consensus 113 ~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~- 189 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL- 189 (406)
T ss_pred eeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-
Confidence 444556554444433444332 2222222222233333333445555555333333333444788887663 23333
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC
Q 004149 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt 313 (771)
...+..+..+.|-|-|.. |+-.+ ++..|..+++ +++. ...++
T Consensus 190 -~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~ 232 (406)
T KOG0295|consen 190 -IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFP 232 (406)
T ss_pred -cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEecc
Confidence 455667889999999987 77665 3446777777 5565 45666
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+..-+..++.+-||..++-.+++. .|.+|-+.+++-+.+..+...+++.+........| ++..
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~ 296 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISE 296 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhh
Confidence 6666788999999999877666553 46677667765444433333333333222222222 2222
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~ 468 (771)
..-+.|+..++++.+++...++| |+.+|..- .|......+...+|+|.|++|+-++.+- .|.+.++...
T Consensus 297 at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk----tlrvwdl~~~ 366 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDK----TLRVWDLKNL 366 (406)
T ss_pred ccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCC----cEEEEEeccc
Confidence 23344566677888888877777 55566533 3334444567789999999887666432 3555565543
No 327
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.53 E-value=0.0028 Score=69.65 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=69.5
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..-....|.++|..+.++.+.- ......+.++.||||||+ |+..+ .++.|..+|+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl----- 605 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL----- 605 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec-----
Confidence 3445678999999888765551 224457889999999999 99877 3457999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++...--..-+..+.+.+|||.|.+||....+. ..||+|.
T Consensus 606 ------------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ------------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ------------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 5555433333345578899999999999887653 3477774
No 328
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.52 E-value=0.02 Score=57.44 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=82.9
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc
Q 004149 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS 317 (771)
Q Consensus 239 ~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~ 317 (771)
...+.++.|++ ... ++-++|.+ .|..+|+ .++. ...++ ...
T Consensus 260 t~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDl-----------------etg~~~~~~~-~~k 301 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDL-----------------ETGGLKSTLT-TNK 301 (423)
T ss_pred ccceeeEEEcC-CCc----eEeecccc---------------eEEEEEe-----------------ecccceeeee-cCc
Confidence 34678899998 333 55555533 5788888 4444 33443 344
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.......+|..+.|+-.+.+ ..|.++|..++....+.. .|-|. ..-+..+.|+
T Consensus 302 sl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~gH-~nwVssvkws 354 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIGH-KNWVSSVKWS 354 (423)
T ss_pred ceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeecc-hhhhhheecC
Confidence 56778889988877655544 358889987765422111 11111 1135678899
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
|-...++++.+.++...||-+.-..+-+..|...
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 9999999999999999999776555556666544
No 329
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0016 Score=65.99 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004149 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
+.+.++|+.|..+-.= +.++|..+..-++.+..++.+++++.+.-.. . -.+...-+.+-..
T Consensus 132 ~~~a~v~~~l~~~g~~-------------k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~----l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 132 ETAANVYQKLVDFGQQ-------------KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--I----LEEIAHHAEVKDL 192 (398)
T ss_pred hhhhhHhHHHhhcCcc-------------eEEEEcCCCCEeeeccccceEEEEecCcchh--h----hhhHhhcCccccc
Confidence 3566677666543322 2233333333333444556777765422211 0 1112222567889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEecCCCCCCCCc
Q 004149 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~~~~~~~~~~ 181 (771)
.|||||+.|+++... ...+|.+.++-...+.++... |.-|....|+-|+ ...++....+...
T Consensus 193 ~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~t~~~k--------~~~~~~cRF~~d~~~~~l~laa~~~~~~~---- 257 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD---SARVWSVNTGAALARKTPFSK--------DEMFSSCRFSVDNAQETLRLAASQFPGGG---- 257 (398)
T ss_pred eeCCCCcEEEEecCC---ceEEEEeccCchhhhcCCccc--------chhhhhceecccCCCceEEEEEecCCCCc----
Confidence 999999999998653 233444433322233332221 2345678898887 3233322221110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
.....+.+|+-. -...++. +.....+..+.-|+||+. ++.
T Consensus 258 ---------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf----~Al 298 (398)
T KOG0771|consen 258 ---------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKF----LAL 298 (398)
T ss_pred ---------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCCcE----EEE
Confidence 011233334321 1122333 444557889999999997 777
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCC
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+.+ ..+-+++. ..-+..++. .+...+....||||.+.++-++.+.
T Consensus 299 GT~d---------------GsVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 299 GTMD---------------GSVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eccC---------------CcEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 7632 24555554 333333332 2445789999999999998877654
No 330
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.49 E-value=0.0018 Score=67.38 Aligned_cols=96 Identities=11% Similarity=0.214 Sum_probs=67.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+-.|||||.-|+.+.++ ..|-+|.-. |-.+...
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrs-GMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRS-GMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEecc-chHHHHH-
Confidence 577899999999887554 455666643 3322221
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
......+..++|.|++.. ++|.. ..++++-.+. ....+.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~----------------g~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQ----------------GGHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEec----------------CCeEEEeecc----------------cccceeEEecc
Confidence 334456778999999999 99975 1378887772 33455666678
Q ss_pred CccccceeecCCCCEEEE
Q 004149 316 ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f 333 (771)
++-+.+..|||....|+.
T Consensus 186 DGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred CcEEEEeecCccccceee
Confidence 888999999999887654
No 331
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.49 E-value=0.00022 Score=76.49 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 553 ~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
..|...++.|.+.||.+ ..|++| +|.+|+... .....++++.+.++.+.+.. ...+|.|+||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 46778899999999976 789998 666665421 11223567777777776652 3468999999999999999
Q ss_pred HHHhCCCc----eeEEEecCCc
Q 004149 633 LIGQAPDK----FVAAAARNPL 650 (771)
Q Consensus 633 ~a~~~p~~----~~a~v~~~p~ 650 (771)
++..+|+. ++..|++++.
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCC
Confidence 99888763 5666666553
No 332
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.47 E-value=0.0055 Score=58.43 Aligned_cols=207 Identities=17% Similarity=0.175 Sum_probs=110.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCC-----cEEEEECCCCCCCC----ChhhhhcC-------CCCccccchhhH
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSL-------PGKVGSQDVNDV 600 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~V~~~d~rG~~~~----g~~~~~~~-------~~~~~~~~~~D~ 600 (771)
.| .||+||.++. ...+...+..|...+ -.++.+|--|+-.. .....+.. ....+.....=+
T Consensus 46 iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wl 122 (288)
T COG4814 46 IP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWL 122 (288)
T ss_pred cc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHH
Confidence 44 6889996655 335556666665554 45666776654211 11111100 001111113345
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004149 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..++.+|.+++.+ .++-++||||||.....++..+.+ .+...|.+++.++.....+-....+
T Consensus 123 k~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~----------- 189 (288)
T COG4814 123 KKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTD----------- 189 (288)
T ss_pred HHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhe-----------
Confidence 6778889888644 678999999999999999886521 2445555554443111111000000
Q ss_pred CCcCCCCC--ChhhHHHHhhcCccccccCC--CCcEEEEeeCCCC------ccCcHHHHHHHHHHHhCCCCEEEEEeCC-
Q 004149 676 KDSFTESP--SVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDL------RVPVSNGLQYARALREKGVETKVIVFPN- 744 (771)
Q Consensus 676 ~~~~~~~~--~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~------~vp~~~~~~~~~~l~~~g~~~~~~~~~~- 744 (771)
.....+ .......|+.. ...++ ++-+|+|.|+-|. .||...+...+..+...+...+-.+|++
T Consensus 190 --v~~~~~~~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk 263 (288)
T COG4814 190 --VLKDGPGLIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGK 263 (288)
T ss_pred --eeccCccccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCC
Confidence 000000 00111111111 11112 3569999998654 5888888888888888766655545555
Q ss_pred -CCccCCCCCChHHHHHHHHHHHH
Q 004149 745 -DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 -~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
+.|.-. +++ ..+...+..||-
T Consensus 264 ~a~Hs~l-hen-~~v~~yv~~FLw 285 (288)
T COG4814 264 DARHSKL-HEN-PTVAKYVKNFLW 285 (288)
T ss_pred cchhhcc-CCC-hhHHHHHHHHhh
Confidence 567644 333 256677777764
No 333
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0021 Score=60.86 Aligned_cols=251 Identities=12% Similarity=0.067 Sum_probs=133.8
Q ss_pred ceEEEeCC--CCCeEEEEecC-C--CCCCeEEEEe-cCCcceEEEe---cCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 101 ASAVVPSP--SGSKLLVVRNP-E--NESPIQFELW-SQSQLEKEFH---VPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 101 ~~~~~~SP--dG~~la~~~~~-~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
...+.||| ++ +||..... - .+...++++. +++...++.. ...+. -.++||+.-..+++++
T Consensus 11 GysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a 79 (311)
T KOG0277|consen 11 GYSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAA 79 (311)
T ss_pred cceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEE
Confidence 34678888 33 34443221 1 2555677776 3333222222 12222 3889999888887776
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceeeccCCCCCCccceEEEec
Q 004149 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp 249 (771)
..... ...|+... .......+.++.-.....|.+-|++.+ +..-+..|-+|+...++-...- ......+-++.|||
T Consensus 80 ~GDGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 80 SGDGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSP 157 (311)
T ss_pred ecCce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCC
Confidence 43321 11233111 112223333333333333444433332 2233567778877655432221 34556788999999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004149 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
--.. ++-.. ..++.+-++|+. ..|+...+..+...+....||.-..
T Consensus 158 ~~~n----lfas~--------------Sgd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 158 HIPN----LFASA--------------SGDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred CCCC----eEEEc--------------cCCceEEEEEec----------------CCCceeEEEeccceeEeecccccCC
Confidence 7665 54333 122344444442 3355544666666778889998777
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004149 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~ 409 (771)
.+++....+ .-|+.||+..=.. .+ ..+. . +...+..+.|||-...|+.+.+.
T Consensus 204 ~vl~Tg~vd----------~~vr~wDir~~r~-pl-------~eL~----g------h~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 204 NVLATGGVD----------NLVRGWDIRNLRT-PL-------FELN----G------HGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred cEEEecCCC----------ceEEEEehhhccc-cc-------eeec----C------CceEEEEEecCcchhhHhhhccc
Confidence 777776543 4577888754221 01 0000 0 00124577899999989999988
Q ss_pred CCeeEEEEEECCCCcEE
Q 004149 410 GSSQVIISVNVSSGELL 426 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~ 426 (771)
+...+||..-...+.++
T Consensus 256 DmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIE 272 (311)
T ss_pred cceEEecccccchhhhh
Confidence 88888886554333333
No 334
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.43 E-value=0.0064 Score=61.18 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=89.0
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004149 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
....++.+.|.|-... +++++- ....|.++++ .+|+ ...|. +.
T Consensus 130 H~rrVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hp 173 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HP 173 (472)
T ss_pred cceeEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CC
Confidence 3446788999999887 777651 2237888887 5665 45555 77
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004149 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
..+.+..|+-||+.|+....+. .|.++|..+++.... .. ...| .......|
T Consensus 174 d~i~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~v~e--~~-------------~heG---~k~~Raif 224 (472)
T KOG0303|consen 174 DMVYSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTVVSE--GV-------------AHEG---AKPARAIF 224 (472)
T ss_pred CeEEEEEeccCCceeeeecccc-----------eeEEEcCCCCcEeee--cc-------------cccC---CCcceeEE
Confidence 7899999999999998777654 588999877664211 10 0000 12345668
Q ss_pred ccCCCEEEEEee--eCCeeEEEEEECCC----CcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 397 LSDGCTMLLSSI--WGSSQVIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 397 s~dg~~l~~~~~--~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
..+|+ | +++. ..+..++-.+|.+. +..+.|..+.+ +-.+.+++|.+.+|.+.
T Consensus 225 l~~g~-i-~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 225 LASGK-I-FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCG 282 (472)
T ss_pred eccCc-e-eeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEe
Confidence 88987 4 4443 22344454455432 12333333333 45566777777666554
No 335
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.42 E-value=0.00024 Score=47.82 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.3
Q ss_pred ceeecCCccccccceEEEeCCCCCeEEEEecCCC-CCCeEE
Q 004149 88 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 127 (771)
Q Consensus 88 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 127 (771)
|+|..+ +.+..|+|||||++|+|++++.+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455555 56889999999999999998762 344444
No 336
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.40 E-value=0.0044 Score=65.81 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=73.2
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..+.|.|=... ++.++ ..+..|-++|+. +....-+|..+.+.+.
T Consensus 679 KI~slRfHPLAad----vLa~a--------------syd~Ti~lWDl~----------------~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 679 KITSLRFHPLAAD----VLAVA--------------SYDSTIELWDLA----------------NAKLYSRLVGHTDQIF 724 (1012)
T ss_pred eEEEEEecchhhh----Hhhhh--------------hccceeeeeehh----------------hhhhhheeccCcCcee
Confidence 4667778775544 43333 123467777771 3445667888888999
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
+.+|||||+.|+.+-.+. .|++++-.+++. .+.++...+ ...-..+.|.=||
T Consensus 725 ~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~-pv~Eg~gpv----------------gtRgARi~wacdg 776 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQ-PVYEGKGPV----------------GTRGARILWACDG 776 (1012)
T ss_pred EEEECCCCcceeeeecCc-----------eEEEeCCCCCCC-ccccCCCCc----------------cCcceeEEEEecC
Confidence 999999999999887653 488887665443 222221110 0112356798999
Q ss_pred CEEEEEeeeC-CeeEEEEEECCC
Q 004149 401 CTMLLSSIWG-SSQVIISVNVSS 422 (771)
Q Consensus 401 ~~l~~~~~~~-~~~~l~~~d~~t 422 (771)
+.|+++.-.. +..+|-++|..+
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhh
Confidence 9887766433 233444445433
No 337
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0015 Score=57.92 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=80.4
Q ss_pred HHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCcCC
Q 004149 602 TAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (771)
+|+ +|+++.. =+.+..+-|.||||+.++.+..++|+++..+|+.+++.+...+++...-.+
T Consensus 88 ~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD---------------- 149 (227)
T COG4947 88 RAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD---------------- 149 (227)
T ss_pred HHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc----------------
Confidence 444 4666653 245678899999999999999999999999999999998775543211111
Q ss_pred CCCChhhHHHHhhcCccccccCC----------CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004149 681 ESPSVEDLTRFHSKSPISHISKV----------KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i----------~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+ ..+|..++..+ +.-+.+..|..|+..+ +.+.+-+.|.++.++..+.+..+..|.
T Consensus 150 ---------v~-ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 150 ---------VY-YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred ---------ee-ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhcccccc
Confidence 01 13333333332 2457778899998874 456788888888888777777665553
No 338
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.059 Score=50.12 Aligned_cols=129 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
..+.||+-|-. .+.....++.+.+.+.. -+|-.|-.++-.+.+ ..|..||+.
T Consensus 161 gdc~iy~tdc~----------------~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdlr 212 (350)
T KOG0641|consen 161 GDCKIYITDCG----------------RGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDLR 212 (350)
T ss_pred CcceEEEeecC----------------CCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEeee
Confidence 55689999971 23335666666665443 223345544433333 357777775
Q ss_pred CCCCCCCccceeeEEecccccCCCCC--cccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCC
Q 004149 358 TNGNFSSLEKIVDVIPVVQCAEGDCF--PGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESN 434 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f--~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~ 434 (771)
-....+ ++ +..| .|+-...+..++.-|.|+ |+.+...++.--||- +.+|.. ++.-+...+
T Consensus 213 v~~~v~----------~l----~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~lyd--irg~r~iq~f~phsad 275 (350)
T KOG0641|consen 213 VNSCVN----------TL----DNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLYD--IRGGRMIQRFHPHSAD 275 (350)
T ss_pred ccceee----------ec----cCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEEE--eeCCceeeeeCCCccc
Confidence 433211 11 1111 112223345667778887 656665666666774 446654 444455556
Q ss_pred ceeeEEeecCCEEEEEE
Q 004149 435 FSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 435 ~~~~~~s~d~~~l~~~~ 451 (771)
+....|||...+++..+
T Consensus 276 ir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCS 292 (350)
T ss_pred eeEEEeCCCceEEEEec
Confidence 66678888766665444
No 339
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.36 E-value=0.002 Score=70.34 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=78.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch----------------HHHHHHHHCCcEEEEECCC-CCCCC
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------------KSLAFLSSVGYSLLIVNYR-GSLGF 580 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----------------~~~~~la~~G~~V~~~d~r-G~~~~ 580 (771)
+..+..|++.... .....|+|++++|||+........ ....-+.+ -..++.+|.+ |. |+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~~~~l~iDqP~G~-G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-EAYVIYVDQPAGV-GF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-ccCeEEEeCCCCc-Cc
Confidence 4568888887663 345679999999999865311100 00001122 2577788865 53 33
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhC----------CCceeEEEecCC
Q 004149 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----------p~~~~a~v~~~p 649 (771)
+...... .........+|+..+++.+.++ +.....+++|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3221111 0111122367777777755543 334568899999999999988777541 113789999998
Q ss_pred ccch
Q 004149 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 7764
No 340
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.35 E-value=0.0067 Score=61.79 Aligned_cols=193 Identities=12% Similarity=0.115 Sum_probs=114.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+......|.|++++..++++ .|.+.+-..-..++.+..... +-.+.+..|.||| |+|..........
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s-----~v~~ts~~fHpDg--Lifgtgt~d~~vk 372 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETS-----DVEYTSAAFHPDG--LIFGTGTPDGVVK 372 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccc-----cceeEEeeEcCCc--eEEeccCCCceEE
Confidence 467788899999998877655 555553222233333211100 0123588999999 4554433333334
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|+........++..+......+.|++++=...+...+..+.+||+..-+ .+.+. .+....+..+.|-+.|+. |
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~----L 447 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY----L 447 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe----E
Confidence 56654444455566666666777888875344444555669999986543 22222 344446778899998987 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ..-+||+++- ++- .-.+...+....+....++|..+.++++-.+++.
T Consensus 448 ~~~g---------------~~l~Vy~~~k-----~~k---------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 448 GIAG---------------SDLQVYICKK-----KTK---------SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred Eeec---------------ceeEEEEEec-----ccc---------cceeeehhhhcccccceeeecccceEEeeccchh
Confidence 7654 2226777763 000 1123344555555667788888888777666653
No 341
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0086 Score=63.50 Aligned_cols=262 Identities=15% Similarity=0.133 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE-ecCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~-~~~~~ 175 (771)
+.+...+..|.|.+||--++. + .+.+| .+|...+.+.+...+ .+++|+|.+..=+.+ +....
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 346778899999999865544 3 45555 456666666665544 699999998763332 22221
Q ss_pred CCCCCccCCCC------CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc------CCceeeccCCCCCCccc
Q 004149 176 PSKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ------SGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 176 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~------~~~~~~l~~~~~~~~~~ 243 (771)
........+ .+...+.... . . .....++..|.-. .| +... +.....+.
T Consensus 466 --~~ivnp~~G~~~e~~~t~ell~~~~--~---~----------~~p~~~~~~W~~~~~~e~~~~-v~~~--I~~~k~i~ 525 (733)
T KOG0650|consen 466 --VLIVNPIFGDRLEVGPTKELLASAP--N---E----------SEPDAAVVTWSRASLDELEKG-VCIV--IKHPKSIR 525 (733)
T ss_pred --eEEeCccccchhhhcchhhhhhcCC--C---c----------cCCcccceeechhhhhhhccc-eEEE--EecCCccc
Confidence 000111111 0000000000 0 0 0011234444322 22 2222 34445688
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccccee
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 323 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~ 323 (771)
++.|.-+|.+ |+.+.-.. .+..+++.+|+ .......+....+.+....
T Consensus 526 ~vtWHrkGDY----latV~~~~------------~~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~ 573 (733)
T KOG0650|consen 526 QVTWHRKGDY----LATVMPDS------------GNKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVK 573 (733)
T ss_pred eeeeecCCce----EEEeccCC------------CcceEEEEecc----------------cccccCchhhcCCceeEEE
Confidence 9999999998 99887322 33478888873 2222233445566788889
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~ 402 (771)
|.|---+|+..+.+ .|.+||+..+... .+.++. .-+..++.+|.|.-
T Consensus 574 FHPs~p~lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDn 621 (733)
T KOG0650|consen 574 FHPSKPYLFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDN 621 (733)
T ss_pred ecCCCceEEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCe
Confidence 99988877665544 3888888764431 111111 12456778898888
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004149 403 MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~ 462 (771)
|++.+. +...--|-+|+.+.-.+.+......+ ...+-+++.-+|+..+.+..-.++.
T Consensus 622 li~gs~-d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 622 LILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEEecC-CCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 876653 33333333455444444443222211 2223344444455444444433443
No 342
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.30 E-value=0.0061 Score=66.66 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=53.4
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhC-CC-------CEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHH
Q 004149 705 TPTIFLLGAQDLRVPVSNGLQYARALREK-GV-------ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKK 768 (771)
Q Consensus 705 ~P~Lii~G~~D~~vp~~~~~~~~~~l~~~-g~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~wl~~ 768 (771)
-.+|+.||..|..||+..+..+|+++.+. +. -.++.++||.+|+...+ ....+.+..+.+|.++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 68999999999999999999999998765 21 26899999999987654 3345789999999875
No 343
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=97.27 E-value=0.0097 Score=57.94 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=121.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc--cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+.++-..|.|.....-|..+.+++.+.++|......+. .-++ +...+...+|.|.|.+|+...+.. ...+
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q------d~~~vrsiSfHPsGefllvgTdHp--~~rl 242 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ------DTEPVRSISFHPSGEFLLVGTDHP--TLRL 242 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh------ccceeeeEeecCCCceEEEecCCC--ceeE
Confidence 34566788888888888888888888888875442211 1111 224588899999999998754433 2233
Q ss_pred EEEecCCcceEEEec-CC-cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004149 127 FELWSQSQLEKEFHV-PQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
|.+.. ..-.... +. ...+.| .++..|+.|+.-+..+
T Consensus 243 Ydv~T---~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS--------------------------------- 280 (430)
T KOG0640|consen 243 YDVNT---YQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS--------------------------------- 280 (430)
T ss_pred Eeccc---eeEeeecCcccccccce------eEEEecCCccEEEEec---------------------------------
Confidence 33331 1111111 22 222233 5788999887333322
Q ss_pred cCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004149 205 EEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
++..|-+||--+++... +....+...+.++.|+.+||. |+-.+ .++-++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 34678888866555433 322234457889999999998 77665 233555
Q ss_pred EEecccccchhhhhhhhcCCCCCCcce-ecCCC-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004149 284 AVRVSLYKSEASELELKESSSEDLPVV-NLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.+ .++... .-+.. ........|+....++.|..... ..|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas----------~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEAS----------NSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEcccccc----------Cceeecccc
Confidence 6665 344332 22211 11234567777777777766442 457888877
Q ss_pred CCCCCC
Q 004149 358 TNGNFS 363 (771)
Q Consensus 358 ~~~~~~ 363 (771)
++..+.
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 655433
No 344
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.27 E-value=0.068 Score=52.25 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=70.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..++..+|||.-..++....- ++.-.+|++.+.|....-. .... +++.-...||.||.+++..+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka--~~~~------~~PvL~v~WsddgskVf~g~------- 91 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKA--QQSH------DGPVLDVCWSDDGSKVFSGG------- 91 (347)
T ss_pred cchheeEeccccCceEEeccc-CCceEEEEEecCCcccchh--hhcc------CCCeEEEEEccCCceEEeec-------
Confidence 347889999955555433333 3667788887544332211 1111 12236899999998766543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.+.++-+||+.++++.++ -..+..+....|-+-... +.|
T Consensus 92 -------------------------------------~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl 130 (347)
T KOG0647|consen 92 -------------------------------------CDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCL 130 (347)
T ss_pred -------------------------------------cCCceEEEEccCCCeeee--eecccceeEEEEecCCCc--cee
Confidence 235788999999999998 566667888888776552 225
Q ss_pred EEEeecCc
Q 004149 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+..+|...
T Consensus 131 ~TGSWDKT 138 (347)
T KOG0647|consen 131 VTGSWDKT 138 (347)
T ss_pred Eecccccc
Confidence 66666443
No 345
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=0.0022 Score=63.90 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=90.9
Q ss_pred ceEEEEEccCCceeec-cCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAV-KGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+||++|+.+=++..- ..+ +...+...++.++.+-. |+|-+. ...++|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s-------------~t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGS-------------TTSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCC-------------CCCceEEEEEcc-------
Confidence 4699999987654332 112 22223344444445556 888652 134588888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
+-.....+..+.+.....+|||||..||..+... .-|.++.+..|+... +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~--e--------- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY--E--------- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee--e---------
Confidence 2233445557788889999999999999988774 346677776655311 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
=..|.++.++.+++|++|+..|..+ +.....++|.++..
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV 250 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence 0123455567899999999966544 45677889988753
No 346
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.013 Score=63.03 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=103.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..-+.||||++||+..-- ...+|.+...+ ..+++.+.....-. -.-..+.|+-|+.++++++.
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~----~~a~~i~ftid~~k~~~~s~------ 448 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLAL----LDASAISFTIDKNKLFLVSK------ 448 (691)
T ss_pred cceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhh----ccceeeEEEecCceEEEEec------
Confidence 457778899999999996532 23477776322 23333321111000 00147889999999999862
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCc
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~ 255 (771)
...+|..+++++...+.+. ..+....+..++-||||.+
T Consensus 449 -------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 449 -------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred -------------------------------------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 1256777777766555442 1223346778899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCC-CCEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPD-GKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpD-G~~l~f 333 (771)
|+..+ ..+.|+++++ ++.+.+.|. .-...++...++|. -+.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 99876 3348999998 777766665 33455777788854 445555
Q ss_pred EecCCCCCCCCccccccceeeecCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... .+|++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 443 3579999985444
No 347
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.22 E-value=0.056 Score=64.22 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=49.2
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.||+-+ |+..... -+-+.-...++|-|.|.. |+.+....+ + ..|..+.-
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q~~~~-~-----------~~VvFfEr--------- 288 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQRLPD-R-----------HDVVFFER--------- 288 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEEEcCC-C-----------cEEEEEec---------
Confidence 4678888866 5544442 122334567899999997 777663111 1 13333332
Q ss_pred hhhhcCCCCCCcce--ec--CCCCccccceeecCCCCEEEEEec
Q 004149 297 LELKESSSEDLPVV--NL--TESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 297 ~~~~~~~~~~~~~~--~l--t~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+|-+.. .| ......+....||+|+..||..-.
T Consensus 289 --------NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 289 --------NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred --------CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 221111 12 223445788999999999988663
No 348
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.067 Score=52.59 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=90.1
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEE
Q 004149 39 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVV 116 (771)
Q Consensus 39 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~ 116 (771)
.+..-..|+++ -|..=+...+.+-++.+..+-.|.++|+..... . +.+-...+.+....|+|+-. .|+-.
T Consensus 32 ~l~~lF~~~aH--~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-l-----g~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 32 TLKPLFAFSAH--AGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-L-----GILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeecccccccc--ccceeEEEecceeEeccCCCCcEEEEeccchhh-h-----cceeccccceEEEEecCCcchhheeee
Confidence 33333444443 344445555666677777778888888754321 1 11112236688888888776 56554
Q ss_pred ecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004149 117 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++ .+.+|+.+.-..+-.+. ...+.| ..++..|-||.-+.+.
T Consensus 104 sdDG-----~i~iw~~~~W~~~~slK-~H~~~V------t~lsiHPS~KLALsVg------------------------- 146 (362)
T KOG0294|consen 104 SDDG-----HIIIWRVGSWELLKSLK-AHKGQV------TDLSIHPSGKLALSVG------------------------- 146 (362)
T ss_pred cCCC-----cEEEEEcCCeEEeeeec-cccccc------ceeEecCCCceEEEEc-------------------------
Confidence 4443 56677555443222221 111223 6899999997444432
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++..|..||+-.|+.-.+ .+-......+.|+|.|.+ .+.+.
T Consensus 147 -------------------~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -------------------GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -------------------CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 236788899888776555 233334455899999998 76665
No 349
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.19 E-value=0.048 Score=53.13 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=35.8
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-c-CC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELW-S-QS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+.+.||+.||.+.+. .+++. . +. ....-.+++.+..- ....++||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~P------QWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNP------QWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCc------hheEEEECCCCcEEEEE
Confidence 35779999999998653 45555 2 21 22233344444321 22578999999999996
No 350
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.18 E-value=0.035 Score=56.14 Aligned_cols=216 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE
Q 004149 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 115 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 115 (771)
.|+--..+|=...-.-+.+.||+.+.... .+-+.++.+...|.-..+. ..+....+.+....|+|-...++
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vI- 97 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVI- 97 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCcee-
Confidence 34433334433333346778888775432 2233444443332111111 11223446688999999777653
Q ss_pred EecCCCCCCeEEEEecCCcceEEE----ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004149 116 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.+..++...-+|.+..++-.+.++ .+. +.... .+-+.|.|--.-++..+
T Consensus 98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rr------Vg~V~wHPtA~NVLlsa-------------------- 150 (472)
T KOG0303|consen 98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRR------VGLVQWHPTAPNVLLSA-------------------- 150 (472)
T ss_pred ecCCCCceEEEEECCCcccccCcccceEEEe-eccee------EEEEeecccchhhHhhc--------------------
Confidence 233332334456555555333322 111 11111 25677888655554432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004149 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+.+||+.+|+...- +.....+.+..|+-||.. |+.+.
T Consensus 151 -----------------------g~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 151 -----------------------GSDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred -----------------------cCCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 2458999999999985444 345567889999999998 77765
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCc-cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004149 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
++..|.++|. ..++...-- .+.+ ......|-.+|+ |+...-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3347888886 445433221 2233 355678888888 44333222 2345
Q ss_pred cceeeec
Q 004149 350 SLHRIDW 356 (771)
Q Consensus 350 ~l~~~d~ 356 (771)
++-+||-
T Consensus 242 q~aLwdp 248 (472)
T KOG0303|consen 242 QIALWDP 248 (472)
T ss_pred ceeccCc
Confidence 6666664
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.0086 Score=61.24 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=45.0
Q ss_pred ccceeecCCCCEEEEEecC---CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 319 AFFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
....+..|||+ |+|.... ... ........||++|..++..+.+.... .....++
T Consensus 113 ~ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla 169 (307)
T COG3386 113 PNDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLA 169 (307)
T ss_pred CCceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceE
Confidence 34568889998 6777665 110 11112237999986433322221111 0235789
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
||||++++|++-+..+ .|++++.+
T Consensus 170 ~SpDg~tly~aDT~~~--~i~r~~~d 193 (307)
T COG3386 170 FSPDGKTLYVADTPAN--RIHRYDLD 193 (307)
T ss_pred ECCCCCEEEEEeCCCC--eEEEEecC
Confidence 9999998888765443 46666553
No 352
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.17 E-value=0.0015 Score=64.70 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCCCCCCe
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 617 (771)
.|+++|+++++ ...|..+++.+...++.|+.++++|.... ......++++.+ .++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~~----------~~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGDD----------EPPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCTT----------SHEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCCC----------CCCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 58899997765 55788888888655699999999984310 111223444443 334444432 2348
Q ss_pred EEEEEcChhHHHHHHHHHhC---CCceeEEEecCC
Q 004149 618 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 649 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p 649 (771)
+.|+|||+||.+|..+|.+- ...+..++++.+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988652 334666776663
No 353
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.17 E-value=0.05 Score=55.98 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=95.1
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|.+||+.+ .++.... -.....+..++|+|=+.. |+.++. -+..|.++|+-
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlR------- 303 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLR------- 303 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeech-------
Confidence 6899999885 3333331 122446778999998887 766651 23478888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEe
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~ 373 (771)
+ -...+..+..+...+..+.|||.-..|.-.+..+ ..|.+||+..-+..+......+ ..-
T Consensus 304 n--------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 304 N--------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred h--------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 1 1234556666777899999999998876666443 5688999865443332111100 000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
++.. |-+...+..+.|.|+.-.++.+...++..+||.+.
T Consensus 366 lF~H-------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFIH-------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEe-------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 01223467889999999999999988888888753
No 354
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.16 E-value=0.00018 Score=74.69 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=56.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||.++.++ .+.|- +..+ +..+-....| .+.+++||||||+|+...++...
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~e---Llg~mkSYFG------GLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQE---LLGVMKSYFG------GLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHH---HHHHHHhhcc------ceEEEEEcCCccEEEecCCcceE
Confidence 4678899999999999998875 44443 2211 1111111111 22599999999999998877643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
. .|......-...-..+++|...+.|.+
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 2 233222222233445778887777764
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.12 Score=55.26 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=124.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
......+++|.++ |+.... ...+..++ ..........+.... ..+.++|||++++......
T Consensus 76 p~~i~v~~~~~~v-yv~~~~--~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKV-YVTTGD--SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeE-EEecCC--CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 4567889999987 444432 33455565 222223333333333 4899999999886652210
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....+.++|..++++... .+........+++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 237889999988887665 343334478899999996 55
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCCCccccceeecCCCCEEEEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
... . ....|..+|. ++....+ .-..........++|||++++.
T Consensus 176 v~~-~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV- 223 (381)
T COG3391 176 VTN-S-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV- 223 (381)
T ss_pred EEe-c-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEEE-
Confidence 443 1 2236888886 4444433 1112233567899999997644
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
.+.. .....+.++|..++........ ..+ . .......+|+|+.+++.... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~---------~~~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLP---------VGS-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEeccc---------ccc-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 1134688888776554221000 000 0 12355788999988776554 456
Q ss_pred EEEEECCCCcEEEecC
Q 004149 415 IISVNVSSGELLRITP 430 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~ 430 (771)
+..+|..+..+.....
T Consensus 277 V~vid~~~~~v~~~~~ 292 (381)
T COG3391 277 VSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEEeCCCCceeeeec
Confidence 7888887777665533
No 356
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.0026 Score=72.43 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=144.9
Q ss_pred cceEEEeCCCCCeEEEEecC---------CCCCCeEEEEe-cCCc--ceEEEecCCcccccccCCCcccceeecCCCCe-
Q 004149 100 GASAVVPSPSGSKLLVVRNP---------ENESPIQFELW-SQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 166 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~---------~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~- 166 (771)
.....+|||++..+.-+... .+.+-.+|.++ .+.. .+.+ +.+-.+..|..+.|++-|..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--------~s~~s~~rF~kL~W~~~g~~~ 79 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--------GSLQSSNRFNKLAWGSYGSHS 79 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--------ccccccccceeeeecccCCCc
Confidence 34568999999522111110 01334567776 2222 1122 22223345679999998887
Q ss_pred ---EEEEecCCCCCCCCccCCC---CC---CCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC
Q 004149 167 ---IAYVAEEPSPSKPTFSLGS---TK---GGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 167 ---la~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
||=..+++... .|+... .. -......+........|++..+ ....+..+.+|++||+..-+ +.. +
T Consensus 80 ~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~--~ 154 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF--T 154 (1049)
T ss_pred cceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCC--C
Confidence 55433433221 222111 00 0112223333343466887777 45567778999999997632 222 1
Q ss_pred CC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec
Q 004149 237 PK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 312 (771)
Q Consensus 237 ~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (771)
+. ...+..++|.-.-.. |...+. ......++|+. .......+
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr----------------~~~pii~l 200 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR----------------KKKPIIKL 200 (1049)
T ss_pred CCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc----------------CCCccccc
Confidence 21 123445556544333 333221 11245555651 33445666
Q ss_pred CCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccC
Q 004149 313 TESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 313 t~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
+...+ .+....|.||+.+-+.+..++. ....|-+||+.--.. .++.. .+..
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP~k~~~-------------------~H~~ 254 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSPLKILE-------------------GHQR 254 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCchhhhc-------------------cccc
Confidence 65544 4778999999976555555442 123466677543211 11110 1223
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEE
Q 004149 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 390 ~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~ 461 (771)
++-.+.|++.+.++++++..++ +++.+|.+||++. .+...........|++..-.+ +..++....-.||
T Consensus 255 GilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~-~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV-MAAASFDGKISIY 324 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcch-hhhheeccceeee
Confidence 5668899998877888775554 4666788888765 333322223344566543322 2333344444444
No 357
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.09 E-value=0.1 Score=56.72 Aligned_cols=123 Identities=16% Similarity=0.123 Sum_probs=72.3
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..++-||+|+ |+.++.+... -....|++++.. .-.+...|..+.-.+.
T Consensus 527 Ev~~l~~s~~gn-----liASaCKS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGN-----LIASACKSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCC-----EEeehhhhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 455778888888 4444422221 123467777751 2233446777788899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004149 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg 400 (771)
...|||||++|+-.+.++ ...||.. ..+..-... + .+-..+.+-+-...|+||+
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~---------f------a~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFR---------F------ACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhh---------h------ccccccceEEEEcccCccc
Confidence 999999999999999876 2345433 111110000 0 0000011122356799999
Q ss_pred CEEEEEeeeCCeeEEEEEEC
Q 004149 401 CTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~ 420 (771)
++ +++++++....+|...-
T Consensus 631 ~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 631 KY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred ce-eEEecCCceEEEEeccC
Confidence 87 67777888888888753
No 358
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.09 E-value=0.054 Score=52.50 Aligned_cols=241 Identities=12% Similarity=0.167 Sum_probs=135.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEE-ecCCCC-----
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV-RNPENE----- 122 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~-~~~~~~----- 122 (771)
...|...|.|......|. ...++.+..++.+++.. ....|--..+.+...+-||-.++|+-. .++.++
T Consensus 20 qtad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~ 93 (370)
T KOG1007|consen 20 QTADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT 93 (370)
T ss_pred cccCccceEEEEeccccC---CcceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee
Confidence 345777788877655543 33566666665555422 222233334778888889977666443 333222
Q ss_pred CCeEEEEe-cCCc-----ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCc--
Q 004149 123 SPIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK-- 193 (771)
Q Consensus 123 ~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~-- 193 (771)
...+|.+. .-+. ...+..++...+|++ .++.|-|++.+|+...+.. ...|.....++ .....
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss 164 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSS 164 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeeccc
Confidence 23466666 2222 122223444455555 7999999999999876432 12233222222 11000
Q ss_pred ---cCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004149 194 ---DCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 194 ---~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
..........|+| .-|.++.......|.-||+.+-+... +. -...-.+..+.|.|+-+. ++.+..
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g----- 234 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG----- 234 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC-----
Confidence 0111123455777 44666666777899999987654222 21 112224667788898766 665542
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.|.++|.-. ....++.|.++..-+..++|.|--.+|+.....+
T Consensus 235 ---------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 235 ---------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ---------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 223566666510 2334566777777789999999888888776543
No 359
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.069 Score=50.27 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=116.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....|.-||++.+.- ++...+.+| ..|...+....... ++....-|-|..+++--..++..
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsghG~---------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGHGH---------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCCCc---------eeeeccccccccccccCCCCceE
Confidence 568889999999998764 334478888 34443333322111 11355667777776654333221
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~ 255 (771)
.+|+...++-..++..+....+.+.|.++-.-.+.+.-+..+.+||-.+..+.++.-+.. ...+.++..+ +..
T Consensus 84 --~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 84 --QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred --EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 245555555566666676777777888887666777778899999987765444420111 1233333332 232
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEE
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f 333 (771)
|+-.+ -+..+..+|+ .-|. ++.+ ...+.+..||+||+-+.-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G~---l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKGT---LSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecce---eehhhcCCcceeEEecCCCCEEEE
Confidence 55443 2235566665 2222 2222 234788999999997766
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCC
Q 004149 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
.+.+ ..|.++|-.+|+..+.
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 5554 3588888888776443
No 360
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.07 E-value=0.0021 Score=64.41 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=80.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---C------cEEEEECCCCCCCCChhhhhc
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~V~~~d~rG~~~~g~~~~~~ 587 (771)
.|+.+|-+...|+..+..++.-.++++||.|++ ...|...+..|... | |.|++|..+| ||-+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 588898888887755444444568889999887 34566666666433 3 8899999999 554321
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEE
Q 004149 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 645 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v 645 (771)
+.+.|- ....+...++-|.-+ +.-++.+|-|.-+|..++..++..+|+.+.+.-
T Consensus 205 -~sk~GF-n~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 205 -PSKTGF-NAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred -CccCCc-cHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 222222 234444555544433 345789999999999999999999999876643
No 361
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.07 E-value=0.0033 Score=61.93 Aligned_cols=112 Identities=9% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
....++||+||.... ........++.....|| .++.+.++..+.. ..+. ............+...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 456899999995432 11222333444444444 7899998864321 1110 01111112244555666666555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 652 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~a~v~~~p~~~ 652 (771)
....+|.|++||||+.+.+.++... . .+|..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2468999999999999999876541 1 24566777777554
No 362
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.048 Score=51.62 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=82.1
Q ss_pred ceEEEEEccCCc-eeeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004149 218 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
-.|+.++-+++- ..++. .....++.++.|+|- |. ++-..--...+|+--.-|.| .-.||..+-
T Consensus 128 vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~------ 194 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDS------ 194 (299)
T ss_pred EEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc-----ccccCcccccceeeccCCcc-ceeeeecCC------
Confidence 455555555332 22231 455678899999996 52 21111111123332223433 224555542
Q ss_pred hhhhhhhcCCCCC-CcceecCCCCccccceeecCCC----CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004149 294 ASELELKESSSED-LPVVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.. .....|..+..-++.++|.|.- .+||-.+++. ..-||..+.+.+..+. +
T Consensus 195 -----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg---------~viIwt~~~e~e~wk~-t--- 250 (299)
T KOG1332|consen 195 -----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG---------TVIIWTKDEEYEPWKK-T--- 250 (299)
T ss_pred -----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC---------cEEEEEecCccCcccc-c---
Confidence 11 1234477777778888998864 4566666553 2234444422221111 0
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004149 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+ -..|| .-+.+++||.-|..|. .+..++...||.=++ .|+.+++..
T Consensus 251 --l--------l~~f~----~~~w~vSWS~sGn~La-Vs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 251 --L--------LEEFP----DVVWRVSWSLSGNILA-VSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred --c--------cccCC----cceEEEEEeccccEEE-EecCCcEEEEEEeCC-CCcEEEccc
Confidence 0 01233 1245778999998554 445566778888776 567776643
No 363
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.054 Score=50.34 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCccCceEEEEEccCCceeec-cCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 213 AGKRQPSLFVININSGEVQAV-KGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l-~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
.+.....|..||+.-...... ...-. ...+..++-.|.|+- |+ .+- ..+.-.++|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lyd 259 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYD 259 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEE
Confidence 344567888999875544333 11111 124567788898884 44 331 222344556
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004149 287 VSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
+ .++. .++...+...++.++|||-.-++...+.+ ..|.+-|+++.-..++.
T Consensus 260 i-----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 260 I-----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELP 311 (350)
T ss_pred e-----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCc
Confidence 5 4454 56677777789999999998888777655 35888888775544432
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
.-. +...++. .-...|.|..- -+++++.+....||.++
T Consensus 312 ~~v------v~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMV------VAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEE------EEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 111 1111111 22456877753 34455556666788764
No 364
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.014 Score=55.36 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=106.8
Q ss_pred cCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+...|++++++ .+.++...-.....+..+++||+.-.. +++++- .++.|-++|+.-
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56899999996 333433311233446788999999888 888762 333566666521
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+.+..+.++...+.+..|++--++++.++.-+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3445566667778899999999877776666332 2355555333222111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.| ...-+.+..|||-..-++.+.+.++..+||-++.. |+..-|......+-...|+.-...++++..
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecC
Confidence 221 11124577899877778888888888999988875 555546554433333445555555655543
No 365
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.052 Score=51.82 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=65.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCC--cEEEEECCCCCCCCChhhhhcCCCC-cc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVG--YSLLIVNYRGSLGFGEEALQSLPGK-VG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G--~~V~~~d~rG~~~~g~~~~~~~~~~-~~ 593 (771)
|.+.+-..+.|--.......+.|+++.|.|+.. ..|...+..|. ..+ +.|..+..-|......+-++..... ..
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 344444444443223456789999999988753 24444555442 222 3355555444322221111111111 00
Q ss_pred ccch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 594 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 594 ~~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.... +.+..-++++.+.- ....++.++|||-|+++.+.+.-.... .+..+++.-|
T Consensus 88 ifsL~~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred ccchhhHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 1112 23334455555542 345789999999999999998863222 2344444444
No 366
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.00 E-value=0.25 Score=58.82 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=61.1
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....+|=.||+++|..+-... .| ....|.+|+=+ |.....++ ..+| -...++|.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~--~~---~~R~iRVy~Re-G~L~stSE---------------~v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPE--TG---SRRVIRVYSRE-GELQSTSE---------------PVDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcC--CC---ceeEEEEECCC-ceEEeccc---------------cCCC----ccCCccCC
Confidence 3456789999999988876431 01 13556677633 33211111 1111 13578999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----CCCCCceeeEEeecCCEEEEEEe
Q 004149 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
|.|..|+-+....+...+..+..++-+-...+ .....+....|+.|+..|+....
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 99996655554445555655655432222222 12224456688888887777653
No 367
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.00 E-value=0.023 Score=61.51 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=77.3
Q ss_pred cccCCC-cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004149 148 SVYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 148 ~~~~~~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
++|+.+ .+.+++.||+|+.||....... +....|++|+..
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTA 560 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEecc
Confidence 346655 5668899999998877644321 134789999977
Q ss_pred CCc-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004149 227 SGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 227 ~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+-. ...| ......+.+..|||||+. |+-++. +|.-.||...-+ ...
T Consensus 561 ~W~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~--------------~~~ 607 (764)
T KOG1063|consen 561 NWLQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED--------------IKD 607 (764)
T ss_pred chhhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc--------------cch
Confidence 643 3445 456678999999999999 988872 233345544210 000
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.-....+..+..-+....|+||+++++..|++.
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 011122445556688999999999977777664
No 368
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.95 E-value=0.0047 Score=59.49 Aligned_cols=193 Identities=15% Similarity=0.126 Sum_probs=103.4
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhH
Q 004149 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 600 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~ 600 (771)
.|+..|+ ++. .||.+-||.+....+ .|....+.|+++||+|++.-|.-.-.|.. ......+.+
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 4666665 233 455555665543333 67788999999999999999875322211 111123455
Q ss_pred HHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCCc
Q 004149 601 LTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
..+++.+.+....+. -+++-+|||+|+-+-+.+...++..-++-++++= -+.. ....++. .+.+.... .
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~---a~~aIP~---~~~l~~~l--~ 143 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFP---ADEAIPL---LEQLAPAL--R 143 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChH---HHhhCch---Hhhhcccc--c
Confidence 566666666543333 2678899999999998887765433333333221 0100 0001111 11111110 1
Q ss_pred CCCCCChhhHHHHhhcCccccccCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccC
Q 004149 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGI 749 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~ 749 (771)
..-.|.++....+.+.+- .....|+|-=.+|.+ +++..+.+.|+.+.. .++....+| .|-.
T Consensus 144 ~EF~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HLT 205 (250)
T PF07082_consen 144 LEFTPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHLT 205 (250)
T ss_pred cCccCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCCC
Confidence 112233333333322211 123467777777765 578888888887633 356667764 7843
No 369
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.11 Score=49.29 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCCCccccCC---CEEEEEeeeCCeeEEEEEECCCCcEE--EecCCCCCceeeEEeecCCEEEEEE
Q 004149 391 ILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~dg---~~l~~~~~~~~~~~l~~~d~~tg~~~--~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
+..++|.|.- +.-+.+.+++++.-||..+.+.++.+ .|..-........||..|+.|....
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 5677888754 34456667788888998885444322 2222122234467888888665544
No 370
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.93 E-value=0.008 Score=65.69 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~V~~~d~rG~~~ 579 (771)
.+..+..|++.... ..+..|+||++.|||+++.... .. ....-+ .+-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW-~~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSW-NKFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-G-GGTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccc-ccccceEEEeecCceE
Confidence 45678888887654 4567899999999998753110 00 000011 1237889999775555
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEEecC
Q 004149 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 648 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~ 648 (771)
+.................+|+..+++.... .+.....++.|+|.|+||..+-.+|.. . .-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 644322111111112335666666664443 444566799999999999988776642 2 23489999999
Q ss_pred Cccch
Q 004149 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98875
No 371
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.92 E-value=0.0076 Score=66.38 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=59.7
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..|.++|. .+... +.+-.+...+....|||||++|+..+.+. .|.+||+.+
T Consensus 556 f~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlpt 607 (910)
T KOG1539|consen 556 FSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLPT 607 (910)
T ss_pred eeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEeccC
Confidence 47889997 55554 44455677789999999999999999874 499999998
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004149 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~ 418 (771)
+... +.+... .-..++.+||+|..|+-+.... ..||.+
T Consensus 608 ~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hvd~--~gIylW 645 (910)
T KOG1539|consen 608 GTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHVDQ--NGIYLW 645 (910)
T ss_pred ccee----------eeEecC----------CcceeeEECCCCCEEEEEEecC--ceEEEE
Confidence 7752 111000 0124678999999776554433 334444
No 372
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.92 E-value=0.63 Score=51.27 Aligned_cols=262 Identities=11% Similarity=0.101 Sum_probs=133.1
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe-EE
Q 004149 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI-QF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~-~~ 127 (771)
+|+|.+.+||+.+... .....+...++.++.--+..++ +.....+|.+||+.+.|++..+...++ +|
T Consensus 136 ~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~~~~d~i~--------~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 136 ISPDHNLLAYSVDVLG----DEQYTLRFKDLATGEELPDEIT--------NTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred eCCCCceEEEEEeccc----ccEEEEEEEecccccccchhhc--------ccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 5789999999987543 3456677777754432222221 125578999999999999887654433 33
Q ss_pred EEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004149 128 ELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.-.-++ ...+++....+. ..+-.+.=|-.+++|+......
T Consensus 204 ~h~~gt~~~~d~lvyeE~d~-------~f~~~v~~s~s~~yi~i~~~~~------------------------------- 245 (682)
T COG1770 204 RHRLGTPGSSDELVYEEKDD-------RFFLSVGRSRSEAYIVISLGSH------------------------------- 245 (682)
T ss_pred EEecCCCCCcceEEEEcCCC-------cEEEEeeeccCCceEEEEcCCC-------------------------------
Confidence 222222 222322221111 1223444555666665543221
Q ss_pred CCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecC--CCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004149 206 EDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspD--g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+++++.+. ++++.+ .+... ...++.| |.. .++.+|..+ .+..
T Consensus 246 ----------~tsE~~ll~a~~p~~~p~vv--~pr~~---g~eY~~eh~~d~----f~i~sN~~g-----------knf~ 295 (682)
T COG1770 246 ----------ITSEVRLLDADDPEAEPKVV--LPREN---GVEYSVEHGGDR----FYILSNADG-----------KNFK 295 (682)
T ss_pred ----------cceeEEEEecCCCCCceEEE--EEcCC---CcEEeeeecCcE----EEEEecCCC-----------cceE
Confidence 235677777654 344555 22221 1122222 444 555554433 1224
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+...+.. ....-+.+..+.....--.++-=+++|+..-++. +..+|++++.++++.
T Consensus 296 l~~ap~~~---------------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~--------glp~v~v~~~~~~~~ 352 (682)
T COG1770 296 LVRAPVSA---------------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQE--------GLPRVVVRDRKTGEE 352 (682)
T ss_pred EEEccCCC---------------ChhcCeeeeccCCCceeeeeeeeccEEEEEeccc--------CCceEEEEecCCCce
Confidence 55544300 1111222223322233334555567788777664 256788899887776
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCC-CCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSI-LSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~-~~~~~s~dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~ 431 (771)
..+.-.. .. |...+ .+.-| +...|-+..+.. -..++|.+|+.+++.+.|...
T Consensus 353 ~~i~f~~------------~a----y~~~l~~~~e~--~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 353 RGIAFDD------------EA----YSAGLSGNPEF--DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred eeEEecc------------hh----hhccccCCCCC--CCccEEEEeecccccceeEEeeccCCcEEEEEec
Confidence 4432211 00 11111 12222 344455544433 344799999999998888543
No 373
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=96.91 E-value=0.052 Score=54.62 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=90.3
Q ss_pred CcccCCccCceEEEEEccCCceeec--cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004149 209 GETYAGKRQPSLFVININSGEVQAV--KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l--~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
|.++++.....|++|...+|....- +-+....++..+.|||.-+. ++++.. -...|.++|
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWD 286 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWD 286 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEE
Confidence 3445555678889998888764332 11335568889999999887 766652 122566666
Q ss_pred cccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 287 VSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+ .++ .+.....+...+.-..|+-+-..||+...+ ..|.+||+..-+..+
T Consensus 287 i-----------------Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 287 I-----------------RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSGQ 338 (440)
T ss_pred e-----------------cCCCccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCCC
Confidence 6 222 222223455567778999887766655543 247777875432211
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
. +. .+. .+..-+.++.|+|....++..+..+....||-+.+
T Consensus 339 p------VA-~fk---------~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 P------VA-TFK---------YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c------ce-eEE---------eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 0 11 010 01123568899998888888777777777775544
No 374
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0057 Score=69.79 Aligned_cols=251 Identities=12% Similarity=0.148 Sum_probs=135.7
Q ss_pred cceEEEeCCCCCe----EEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004149 100 GASAVVPSPSGSK----LLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~----la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
.-...+|++.|.. ||- ..++|.-.+|.... .+....++..-...+|.| .++.|+|... .||-.++
T Consensus 66 rF~kL~W~~~g~~~~GlIaG--G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAG--GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeec--cccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCC
Confidence 3456889999888 332 22223333333321 122222222223444555 7899999877 6666655
Q ss_pred CCCCCCCCccCCCCCCCCCCcc--CCCCCCcccccCCcCccc-CCccCceEEEEEccCCce-eeccCCCCCCccceEEEe
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~ws 248 (771)
+...- .|+............ ...-+.-+.|...--..+ .+.......+||+...+. ..+..+........++|.
T Consensus 138 ~geI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh 215 (1049)
T KOG0307|consen 138 DGEIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH 215 (1049)
T ss_pred CCcEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence 54332 343222111111100 011111222332221111 233455788999987643 333222233345688999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG 328 (771)
||+.. -+.++.+++ +..-|-.+|+-. .+...+.++.+...+.+..|++.+
T Consensus 216 P~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 216 PDHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred CCCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCC
Confidence 99976 444442222 222444555411 455667777888889999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~ 408 (771)
..++..+..+ .+++.|+.++++.. .-+....+. ...+.|.|-.-.++..++
T Consensus 266 ~~lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~nW---------~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 266 PRLLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGNW---------CFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred chhhhcccCC----------CCeeEecCCCceEe----------eecCCCCcc---------eeeeeecCCCcchhhhhe
Confidence 8787777654 57999998886641 111111111 235678887766777777
Q ss_pred eCCeeEEEEEE
Q 004149 409 WGSSQVIISVN 419 (771)
Q Consensus 409 ~~~~~~l~~~d 419 (771)
.++...||.+.
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 88888888765
No 375
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.87 E-value=0.15 Score=51.34 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=62.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004149 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+++++|+.+-+..... ..++..+..++|+|||.. |+..+..+ .-|.++.++
T Consensus 152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~l----lATASeKG--------------TVIRVf~v~-------- 204 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTL----LATASEKG--------------TVIRVFSVP-------- 204 (391)
T ss_pred CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCE----EEEeccCc--------------eEEEEEEcC--------
Confidence 368999998765544331 234556778899999998 88776322 234445542
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++.....+..+ ...+.+.+||||++.|.-.++.+ +-+|+.++...
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---------TVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---------TVHIFKLEKVS 251 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---------eEEEEEecccc
Confidence 33333333322 33578999999999988887664 35566665433
No 376
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.85 E-value=0.046 Score=60.12 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.3
Q ss_pred ceEEEEEccC-----CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 218 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 218 ~~l~v~d~~~-----~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+.+-++|..+ .++... ++-..++..+..||||++ ++...
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVan 339 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANG 339 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeC
Confidence 4677888877 345554 556667888999999997 66654
No 377
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.82 E-value=0.13 Score=62.52 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=49.2
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc-ccCCCCCcccccCCCCCCcccc
Q 004149 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+|+|++..|+..... ..+|+++|..++....+..... ...... ......| ..+..++++|
T Consensus 686 ~gVa~dp~~g~LyVad~~----------~~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~-----~~P~GIavsp 749 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG----------QHQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSF-----AQPSGISLSP 749 (1057)
T ss_pred eEEEEecCCCeEEEEECC----------CCeEEEEECCCCeEEEEecCCc-cccCCCCccccccc-----cCccEEEEeC
Confidence 457899977766555432 3568999876654321111000 000000 0000011 1345688999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
||+.||++... ...|..+|++++..+.+
T Consensus 750 dG~~LYVADs~--n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 750 DLKELYIADSE--SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCEEEEEECC--CCeEEEEECCCCcEEEE
Confidence 99988776543 34688888887775543
No 378
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.058 Score=56.06 Aligned_cols=186 Identities=12% Similarity=0.119 Sum_probs=114.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+|++.+++....++ . +..+|+ .+... .+++.. ..+. ..+.+|+|-..+|++..
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd-~---v~k~~d~s~a~v-~~~l~~-htDY------VR~g~~~~~~~hivvtG------ 172 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDD-K---VVKYWDLSTAYV-QAELSG-HTDY------VRCGDISPANDHIVVTG------ 172 (487)
T ss_pred CceeEEEecccCCeEEEecCCC-c---eEEEEEcCCcEE-EEEecC-Ccce------eEeeccccCCCeEEEec------
Confidence 3467788999999886544332 3 455552 22222 333321 1122 37999999988888852
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|.+||........++ ......+..+.+-|.|..
T Consensus 173 -------------------------------------sYDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~---- 210 (487)
T KOG0310|consen 173 -------------------------------------SYDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL---- 210 (487)
T ss_pred -------------------------------------CCCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----
Confidence 23467888888765433332 456667888999999887
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEec
Q 004149 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ...+-+||+- .+++. .....+...+.+.++.-|++.|+-.+-
T Consensus 211 iasAg----------------Gn~vkVWDl~----------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 211 IASAG----------------GNSVKVWDLT----------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEcC----------------CCeEEEEEec----------------CCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 66554 2267788871 34443 333446778999999999999987776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004149 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~ 407 (771)
+. ++.++|..+-+ ++.-+ .|| ..+-+++.|||+..+++-.
T Consensus 259 D~-----------~VKVfd~t~~K----------vv~s~------~~~----~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 259 DR-----------HVKVFDTTNYK----------VVHSW------KYP----GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cc-----------ceEEEEccceE----------EEEee------ecc----cceeeEEecCCCceEEEec
Confidence 64 35566633211 11111 222 2455778889988877543
No 379
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.79 E-value=0.0063 Score=69.00 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=46.3
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEE-EecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVF-LSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f-~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|.+.|. ++...+.+ +.....+.+|.|||||++|+| ++.+.- .+...||+.|+.+
T Consensus 330 ~L~~~D~-----------------dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~------~g~s~vYv~~L~t 386 (912)
T TIGR02171 330 NLAYIDY-----------------TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL------PGKSSVYVRNLNA 386 (912)
T ss_pred eEEEEec-----------------CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCC------CCCceEEEEehhc
Confidence 7999998 67777777 777778999999999999999 655430 1356799999988
Q ss_pred CCCC
Q 004149 359 NGNF 362 (771)
Q Consensus 359 ~~~~ 362 (771)
.+..
T Consensus 387 ~~~~ 390 (912)
T TIGR02171 387 SGSG 390 (912)
T ss_pred cCCC
Confidence 6654
No 380
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.78 E-value=0.058 Score=53.17 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=22.6
Q ss_pred EEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004149 222 VININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 222 v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++.-.++.+-.+. .....++.++.|.+||.+ |+..+
T Consensus 234 iy~~~~~~pl~ll-ggh~gGvThL~~~edGn~----lfsGa 269 (406)
T KOG2919|consen 234 IYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNK----LFSGA 269 (406)
T ss_pred eEecCCCCceeee-cccCCCeeeEEeccCcCe----ecccc
Confidence 3333444554442 244557889999999997 65554
No 381
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.77 E-value=0.0024 Score=66.50 Aligned_cols=130 Identities=22% Similarity=0.209 Sum_probs=80.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH-HCCcEEEEECCCCCCCCChh---hhhcCC
Q 004149 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS-SVGYSLLIVNYRGSLGFGEE---ALQSLP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~~G~~V~~~d~rG~~~~g~~---~~~~~~ 589 (771)
+.|.+-+. ++.|. . ...+.-++|+++||++-.......- -...|+ ....+|+.++||-. .+|-= .....+
T Consensus 117 SEDCLYlN--VW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaP 191 (601)
T KOG4389|consen 117 SEDCLYLN--VWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAP 191 (601)
T ss_pred ChhceEEE--EeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCC
Confidence 33444444 55563 1 2233449999999887655444322 233444 44578899999932 23321 112335
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHHhC--CCceeEEEecCCccc
Q 004149 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~a~v~~~p~~~ 652 (771)
++.| .-|..-|++|+.++ ..-|++||.|+|.|+|+.-+.+.+..- ..+|+.+|+.++..+
T Consensus 192 GNmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 192 GNMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred Cccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 5554 67888899999886 236899999999999998766544321 236778887777554
No 382
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.75 E-value=0.029 Score=56.90 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
.+-..+|+||+.. +++.+ -...++.+|+ ..|. ...+.++...+
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4567899999998 88876 2236777887 4454 45566677788
Q ss_pred cceeecCCCCEEEEEecCC
Q 004149 320 FFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|.|-+++++-.+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998877664
No 383
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.71 E-value=0.096 Score=52.35 Aligned_cols=229 Identities=10% Similarity=0.103 Sum_probs=133.8
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+.++..++.+-+||+.++.- .+| ++.....+..+++|+---++.-..+.+ ...-|+-.. .+++....+
T Consensus 166 f~tgs~DrtikIwDlatg~L---klt---ltGhi~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~-nkvIR~YhG 233 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL---KLT---LTGHIETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEY-NKVIRHYHG 233 (460)
T ss_pred EEecCCCceeEEEEcccCeE---EEe---ecchhheeeeeeecccCceEEEecCCC-----eeEEEechh-hhhHHHhcc
Confidence 44555667777777855421 222 222345678889998777774332222 344442111 112211111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
....| .++...|--..|+..+.+...+ .|+.-..........+.....++.+.+--+..+++..+..|.+||
T Consensus 234 HlS~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 234 HLSGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred cccee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 11111 4778888777777766655443 455433333344444445555566666556777888899999999
Q ss_pred ccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004149 225 INSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 225 ~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+..|+. ..+ +.....+...+..|+-.. |.+. ....|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~------fASa--------------s~dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL------FASA--------------SPDNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh------hhcc--------------CCccceeccCC---------------
Confidence 987764 344 667778888888887654 3331 11146666663
Q ss_pred CCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004149 304 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 304 ~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
++.-+..|+.+...+.......||= ++...+ ...|+.|||.+|-..|
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~d----------ng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGGD----------NGSIMFWDWKSGHNYQ 395 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcCC----------ceEEEEEecCcCcccc
Confidence 4455666777777777777777773 333333 2469999999876544
No 384
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.69 E-value=0.093 Score=50.95 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=85.3
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec-CC----
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TE---- 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l-t~---- 314 (771)
.+.-+.|.|++++ |+-+.. .+|..++++ ++.+ ...+ ..
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567799999999 887751 156677763 2222 1111 11
Q ss_pred CCccccceeecC--CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 315 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 315 ~~~~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
......+-+||| ||..++.++.. .|+.||+.+.....-... .+...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~d------------------AHgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIED------------------AHGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhh------------------hhcceee
Confidence 122467789998 89988876643 488899876443111110 1112345
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~ 451 (771)
.+.|.|+-..++++...++..+||-....+-.++.+....-.+-...|.+..++|+.+.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 77889999999998888888888865443333444443322222234455555555443
No 385
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.68 E-value=0.11 Score=53.63 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred cccCCccCceEEEEEccCCce--eecc----CCCCCCccceEEEecCCCCCccEEE-EEeecCcceeeeeeeeccCCcee
Q 004149 210 ETYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLV-FVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~----~~~~~~~~~~~~wspDg~~~~~~l~-~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
.++.+.....|++||+..... ..+. -......+..++|+|-.+. |. +++ ..+.|
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv~---------------dd~~L 252 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSVG---------------DDGKL 252 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheeec---------------CCCeE
Confidence 344445668899999865432 1110 0223446778899997775 43 333 34578
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 283 YAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.++|+-. .+.+. .....+.+.+...+|+|-+..|+-+... ...|.+||+..=..
T Consensus 253 ~iwD~R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 253 MIWDTRS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNK 307 (422)
T ss_pred EEEEcCC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhccc
Confidence 8888710 01222 2233445668899999977766544432 24588888765322
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
...+ |.+ +...+..+.|||+...++.++..++...+|-+..
T Consensus 308 ~lh~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 308 PLHT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred Ccee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 1111 110 1113457889999999999988888878886654
No 386
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.03 Score=51.80 Aligned_cols=137 Identities=23% Similarity=0.276 Sum_probs=77.2
Q ss_pred hhhccccCc-ceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--------------Cc
Q 004149 490 VKSLLSSRQ-FSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--------------SS 554 (771)
Q Consensus 490 ~~~~l~~~~-~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--------------~~ 554 (771)
+-.+|+..- +....||+... . ..+.. +++..++. -..+..++|++||.+..... ..
T Consensus 62 VYeLLEk~c~Lkr~~ip~d~~----e---~E~~S-FiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GT 132 (297)
T KOG3967|consen 62 VYELLEKDCNLKRVSIPVDAT----E---SEPKS-FIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGT 132 (297)
T ss_pred HHHHHHhcCCceeEeecCCCC----C---CCCcc-eEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCC
Confidence 344455443 45555665431 1 11222 34444332 23445689999996543211 11
Q ss_pred chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHH
Q 004149 555 YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634 (771)
Q Consensus 555 ~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a 634 (771)
..+.+....+.||-|++.+..-...+-....+ +...-...++.+.....+++.. ..++.|+++.||+||.+++-++
T Consensus 133 QiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~ 208 (297)
T KOG3967|consen 133 QIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--PQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLV 208 (297)
T ss_pred cChHHHHHHHcCCcEEEeCCchhhhhhhcccC--cchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHH
Confidence 22345666788999999986532222111111 1112223455555555555543 4578899999999999999999
Q ss_pred HhCCC
Q 004149 635 GQAPD 639 (771)
Q Consensus 635 ~~~p~ 639 (771)
.++|+
T Consensus 209 ~~f~~ 213 (297)
T KOG3967|consen 209 ERFPD 213 (297)
T ss_pred HhcCC
Confidence 99875
No 387
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.13 Score=55.61 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=52.8
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004149 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|||+.+..... ..+.++|.+ +|+....|.. ....+.-++||.||++.|-- +......+
T Consensus 21 kPDGsqL~lAAg----------~rlliyD~n-dG~llqtLKg-----HKDtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAAG----------SRLLVYDTS-DGTLLQPLKG-----HKDTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEecC----------CEEEEEeCC-Cccccccccc-----ccceEEEEEEccCCceeccC-----CCceeEEE
Confidence 468888877642 356777763 3333332222 22458889999999988753 33347788
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
|.....-.+-....+. +.+.+|.|-...|+.-
T Consensus 80 W~~klEG~LkYSH~D~---------IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 80 WTSKLEGILKYSHNDA---------IQCMSFNPITHQLASC 111 (1081)
T ss_pred ecccccceeeeccCCe---------eeEeecCchHHHhhhc
Confidence 8432111111111111 2688999998888764
No 388
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.032 Score=59.99 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=37.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+...+|-|||.+|+...... +++.+ .+|..-+......+ ...+++||.||++.|..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLKgHKD---------tVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLKGHKD---------TVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCcccccccccccc---------eEEEEEEccCCceeccCC
Confidence 367899999999998875443 66666 33332222211111 126999999999988754
No 389
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.12 Score=57.78 Aligned_cols=257 Identities=14% Similarity=0.117 Sum_probs=136.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+-..+|.|.--+|+..--.+ ++.+|+- +.....+ +.| ||...++.|.|++-.++...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rF----deH-----dGpVRgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRF----DEH-----DGPVRGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhh----hcc-----CCccceeeecCCCCeEEecCCccEE
Confidence 4566789999888886543322 6666632 2221111 112 3344899999999755444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|+............+..|.....|-...--.++...+..|.+|+..+++...+. +.....+.-+.|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 35554433444444455555544444443334455567799999999998876653 556667888899997775
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC--------CC----cc-eecCCCCcccccee
Q 004149 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE--------DL----PV-VNLTESISSAFFPR 323 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~--------~~----~~-~~lt~~~~~~~~p~ 323 (771)
||-.+ -+..|.++|+++..++...+-.-++... -| -. ..|..+...+...+
T Consensus 150 -IVSaS---------------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSAS---------------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEec---------------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 66554 3346788887544222211110000000 00 01 12233444566677
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l 403 (771)
|.|.=--|+-.+.+. .-.||+|+-.. . +++ +.-.|.| .++.++-|.|.-. |
T Consensus 214 fhpTlpliVSG~DDR---------qVKlWrmnetK-a--------WEv---------DtcrgH~-nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDR---------QVKLWRMNETK-A--------WEV---------DTCRGHY-NNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCcc---------eeeEEEecccc-c--------eee---------hhhhccc-CCcceEEecCccc-e
Confidence 777655444333322 34566665221 1 110 1111222 2456677888654 6
Q ss_pred EEEeeeCCeeEEEEEEC
Q 004149 404 LLSSIWGSSQVIISVNV 420 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~ 420 (771)
+++.+.+...++|-++-
T Consensus 265 IlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEecCCCccEEEEeccc
Confidence 67777677777775443
No 390
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.53 E-value=0.13 Score=53.21 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEE
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~d~~~l~~~ 450 (771)
+++-.|... |+.+.++.+..+||.+.-.-..+..|..- .+.+....|+.+|+.+++.
T Consensus 385 sla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 385 SLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 344455554 88888899999999987543345544322 2334556778888866655
No 391
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0096 Score=60.24 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=68.3
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...-++||+||..... ...-.+.++-....| .+.+.+..+..+ .-+......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 3457999999954432 223334444444444 345556655311 1110011112222346778888889888753
Q ss_pred CCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCccch
Q 004149 613 ANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNL 653 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~~~ 653 (771)
..+|.|+.||||.++++..+.+- +.+|+-+|+.+|=.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 57899999999999999876541 3457888888886654
No 392
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.49 E-value=0.25 Score=48.86 Aligned_cols=200 Identities=14% Similarity=0.208 Sum_probs=95.2
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 7999999999998886543 67899998765555553
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-- 313 (771)
..+......+++.-+|. ++.+. .|...|+.++++... ..+ .....+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~---~~~-------~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT---TSL-------DRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE-------TT---------EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc---ccc-------chhhceEEecc
Confidence 33333456778876554 44443 244578888773200 000 001112221
Q ss_pred ---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004149 314 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 314 ---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
..+......+|+|.++.|+.+..+. ...||.++...+.. .+. +......... ......
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~-~~~-----~~~~~~~~~~----~~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGF-DLF-----VSDDQDLDDD----KLFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-H----T--SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCcc-cee-----eccccccccc----cceecc
Confidence 1233478899999999988776543 24566666422111 000 0000000000 011123
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCC---------CceeeEEeecCCEEEEEE
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAES---------NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~---------~~~~~~~s~d~~~l~~~~ 451 (771)
+..+.+.|....|++.+. ....|..+|. +|++. .+.-..+ .....+++++| .||.++
T Consensus 173 ~S~l~~~p~t~~lliLS~--es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSD--ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEET--TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred ccceEEcCCCCeEEEEEC--CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc
Confidence 456677787777777754 2345777785 45543 2322221 23345677665 455555
No 393
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.14 Score=49.79 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=98.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.=+|||||++|.-..+.-+.+..++-+++ .....++-..+ -+.| .+.|.+||+.|+.+.. .-...
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH----------ev~lm~DGrtlvvanG-GIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH----------EVTLMADGRTLVVANG-GIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc----------eeEEecCCcEEEEeCC-ceecc
Confidence 45799999988544444444555666663 22333333322 2333 7899999998877532 11110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccCCC---CCCccceEEEecCCCCC
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIP---KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~---~~~~~~~~~wspDg~~~ 254 (771)
|.+.. -+.......+.|.++|..+|++.. .+ .| ...++..+..-+||+
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCc--
Confidence 11100 122223356899999977776432 22 33 245788889999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------CccccceeecCC
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFFPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------~~~~~~p~~SpD 327 (771)
|+|...-.+++ +...-|.-.-. .+...+.|.-. ...+.+.+.+-+
T Consensus 239 ---vwfgcQy~G~~--------~d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPR--------NDLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCC--------ccCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 77765333221 11112222221 22322222211 224566777766
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
...++..+.+ .+...+||.++|...
T Consensus 291 ~glV~lTSP~----------GN~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPR----------GNRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCC----------CCeEEEEEcCCCcEE
Confidence 6666666654 256888999988753
No 394
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.46 E-value=0.036 Score=60.80 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004149 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
|..+.+++.+..||+..... ++.+.+ ....+..++|||.-... |++..++| ++.+|+--++.+-...-..
T Consensus 149 liSGSQDg~vK~~DlR~~~S--~~t~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS--KSTFRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred EEecCCCceEEEEeeecccc--cccccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhc
Confidence 44556778888888865533 222212 23568889999955433 44433334 5555543333222111111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004149 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
..|.| .++.|+|++.+||..+ ++..+.+||
T Consensus 219 H~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd 248 (839)
T KOG0269|consen 219 HNGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWD 248 (839)
T ss_pred ccCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEe
Confidence 12222 6899999999999854 335788999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+++...+.-+..-..++.+.|-|+-..
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc
Confidence 88776544421333446788999999876
No 395
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.43 E-value=0.39 Score=49.82 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=100.4
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCC-CeEEEEecCCC
Q 004149 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE-TLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg-~~la~~~~~~~ 175 (771)
+.+...+|.|.-. .++.+ ....|.-.+|.+.. ......+.-. ....+ .++++.|+|-. .+|+..+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lva~-GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~------~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAV-GDKGGQVGLWNFGTQEKDKDGVYLF-TPHSG------PVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEEEE-ccCCCcEEEEecCCCCCccCceEEe-ccCCc------cccceEecCCChhheeeeccCce
Confidence 4578889999877 44433 33334444554431 1111111111 11111 23789999954 44555555655
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCC
Q 004149 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.+...+............+...|.....+..+-+..+.+.....+-+||+.++. ...+ .-.+-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 443222211111111111122222222333332333333344455667765443 3344 233347889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEE
Q 004149 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
+..++- .+....++|+-. + .+.. ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s--------------~D~T~kIWD~R~-------l-------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS--------------LDQTAKIWDLRQ-------L-------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc--------------cCcceeeeehhh-------h-------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 444331 111333444410 0 1111 22334566679999999999988
Q ss_pred EEEecCCCCCCCCccccccceeeec
Q 004149 332 VFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+....+. .|.++|.
T Consensus 385 ~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDN-----------EIRVFDS 398 (498)
T ss_pred EeeccCC-----------ceEEeec
Confidence 8777664 4777775
No 396
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.43 E-value=0.023 Score=72.10 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004149 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.++++||.++. ...|......| ..++.|+.++.+|.+. . ......++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~---~-------~~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDG---P-------MQTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCC---C-------CCCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997665 34666677666 4569999999998432 1 011123444444333322221 1135
Q ss_pred eEEEEEcChhHHHHHHHHHh---CCCceeEEEecCC
Q 004149 617 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~---~p~~~~a~v~~~p 649 (771)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999885 4677777776655
No 397
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.043 Score=56.71 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=115.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+...+-+|+|.+|+- .... ++-.+|.+. .|....+.. ....+ .++.||-||++|+..+.+....
T Consensus 82 g~v~al~s~n~G~~l~a-g~i~-g~lYlWels-sG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA-GTIS-GNLYLWELS-SGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred cceeeeecCCCceEEEe-eccc-CcEEEEEec-cccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCccEE
Confidence 55778888999998853 2222 333444443 343322221 12223 5889999999888777665432
Q ss_pred CCCccCC----CC-----CCCCCCccCCCCCCcc--cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004149 178 KPTFSLG----ST-----KGGSSDKDCNSWKGQG--DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 178 ~~~~~~~----~~-----~~~~~~~~~~~~~~~~--~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
.|... .. +....+.++.-...++ .+.+--...++...+..+.+||+..|.+..- ..-+..+..++
T Consensus 149 --vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 149 --VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred --EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 22210 01 1111122221111111 1111113444555678899999999975433 34455677888
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC-CCCCCcceecCCCCc--ccccee
Q 004149 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~lt~~~~--~~~~p~ 323 (771)
..|-++ .+|++.+ .+.||..++-.-+.++...+ .+. ...+.+...+..+.+ .+...+
T Consensus 225 lDpae~-----~~yiGt~--------------~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTE--------------EGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCC--------------cceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEE
Confidence 999776 6666633 33566666532221111111 111 112223344555555 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.|-||+.|+-.+.+ .++.+||..+.+.
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHHH
Confidence 99999988755544 3588888877554
No 398
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.12 Score=55.32 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=79.6
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-e
Q 004149 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-Q 231 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~ 231 (771)
.+..+.|.-+|.+|+.+.-....+.-....... .....+.....-.....|-|---. +....+..+.++|+..+++ +
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~-lfVaTq~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPY-LFVATQRSVRIYDLSKQELVK 601 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCce-EEEEeccceEEEehhHHHHHH
Confidence 346889999999999987665544322221111 111111111111112223333211 1122356788888877654 3
Q ss_pred eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee
Q 004149 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 311 (771)
Q Consensus 232 ~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (771)
.+ .++...+..++.+|.|.. |+..+. ...+..+|++- .+...++
T Consensus 602 kL--~tg~kwiS~msihp~GDn----li~gs~---------------d~k~~WfDldl---------------sskPyk~ 645 (733)
T KOG0650|consen 602 KL--LTGSKWISSMSIHPNGDN----LILGSY---------------DKKMCWFDLDL---------------SSKPYKT 645 (733)
T ss_pred HH--hcCCeeeeeeeecCCCCe----EEEecC---------------CCeeEEEEccc---------------CcchhHH
Confidence 44 555667888999999998 888763 23566666632 3444455
Q ss_pred cCCCCccccce----------eecCCCCEEEEEec
Q 004149 312 LTESISSAFFP----------RFSPDGKFLVFLSA 336 (771)
Q Consensus 312 lt~~~~~~~~p----------~~SpDG~~l~f~~~ 336 (771)
|..+...++++ +-|+||..++|-.+
T Consensus 646 lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred hhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 54444433333 34677777777554
No 399
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.32 E-value=0.63 Score=45.77 Aligned_cols=229 Identities=12% Similarity=0.060 Sum_probs=112.6
Q ss_pred EEEEEeechhh-cccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004149 56 AMFSISQPNLL-ANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 56 v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
|+|+..+.++. .++-++.++.|.+...+. .++-....+ +.+....||-||.++ |+..-+ +.-.+|.+- .+
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskV-f~g~~D-k~~k~wDL~-S~ 104 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKV-FSGGCD-KQAKLWDLA-SG 104 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceE-EeeccC-CceEEEEcc-CC
Confidence 44444333322 334445666666755421 111111111 458899999999777 554433 333344333 33
Q ss_pred cceEEEecCCcccccccCCCcccceeecCCCC--eEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc--C
Q 004149 134 QLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW--G 209 (771)
Q Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--g 209 (771)
+..++-.....+ ....|=+... -|+..+-+++.+ +|+........... ..+-+|..|- .
T Consensus 105 Q~~~v~~Hd~pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~-----LPeRvYa~Dv~~p 167 (347)
T KOG0647|consen 105 QVSQVAAHDAPV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQ-----LPERVYAADVLYP 167 (347)
T ss_pred Ceeeeeecccce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeee-----ccceeeehhccCc
Confidence 444443333333 4666666554 566666666544 45422111111000 0011122221 1
Q ss_pred cccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004149 210 ETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
-..+......|.+++|+++.. +++. .+-......++.-+|.+. .+..+-+ +...|..+|-
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id~ 229 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYIDD 229 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecCC
Confidence 122344567899999976532 3332 455667788888899887 6555422 2234555553
Q ss_pred ccccchhhhhhhhcCCCCCCcceec----CCCCccccceeecCCCCEEEEEecCC
Q 004149 288 SLYKSEASELELKESSSEDLPVVNL----TESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+.+ .+.-+-++.+- ......+.+..|.|.-.+|+.+..+.
T Consensus 230 ~~~-----------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 230 PNP-----------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred CCc-----------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 100 00000112221 11234578899999888888777663
No 400
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.31 E-value=0.092 Score=51.80 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=67.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeecc
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~ 234 (771)
.+-+|++|++.||...+ ..++.++...+.. .+..-
T Consensus 14 tchAwn~drt~iAv~~~--------------------------------------------~~evhiy~~~~~~~w~~~h 49 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPN--------------------------------------------NHEVHIYSMLGADLWEPAH 49 (361)
T ss_pred eeeeecCCCceEEeccC--------------------------------------------CceEEEEEecCCCCceece
Confidence 68899999999998532 2345555544444 22221
Q ss_pred -CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ce
Q 004149 235 -GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VV 310 (771)
Q Consensus 235 -~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~ 310 (771)
-...+..+..+.|+|-+.+ |+-.+ .+|+..+|... .+++ .-
T Consensus 50 tls~Hd~~vtgvdWap~snr----Ivtcs-------------~drnayVw~~~------------------~~~~Wkptl 94 (361)
T KOG1523|consen 50 TLSEHDKIVTGVDWAPKSNR----IVTCS-------------HDRNAYVWTQP------------------SGGTWKPTL 94 (361)
T ss_pred ehhhhCcceeEEeecCCCCc----eeEcc-------------CCCCccccccC------------------CCCeeccce
Confidence 0334556778999999999 99876 23555666553 2222 23
Q ss_pred ecCCCCccccceeecCCCCEEEEEecC
Q 004149 311 NLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 311 ~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|...++....+.|||.+.++|..+..
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCc
Confidence 344567788999999999999876643
No 401
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.31 E-value=0.021 Score=58.50 Aligned_cols=92 Identities=22% Similarity=0.239 Sum_probs=62.1
Q ss_pred HHHHHCCcEEEEECCCCCCC---CChhhhhc---CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004149 560 AFLSSVGYSLLIVNYRGSLG---FGEEALQS---LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 560 ~~la~~G~~V~~~d~rG~~~---~g~~~~~~---~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
+...+.+..+|.+++|--|+ +|...... +..-..++..+|....+.+|++........|+++|.|+||++++++
T Consensus 105 D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 105 DLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred hhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHH
Confidence 34456788999999986221 22221110 0111123457888888999988755667889999999999999999
Q ss_pred HHhCCCceeEEEe-cCCcc
Q 004149 634 IGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 634 a~~~p~~~~a~v~-~~p~~ 651 (771)
=.++|..+.++.+ .+|+.
T Consensus 185 RlKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 185 RLKYPHIVLGALAASAPVL 203 (492)
T ss_pred HhcChhhhhhhhhccCceE
Confidence 9999987765544 44543
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.29 E-value=0.21 Score=49.41 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=86.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.||.++|+.+.+. ...++.+...|+..+.+.+.. .+ .+.++++.-+|+ ++.+.++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~------D~EgI~y~g~~~-~vl~~Er----- 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FG------DYEGITYLGNGR-YVLSEER----- 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEETT-----
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CC------CceeEEEECCCE-EEEEEcC-----
Confidence 447889999999998777654 467888886666666666532 11 226888887775 3334332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--Cc-----eeecc-CCC--CCCccceEEEe
Q 004149 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 248 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~-----~~~l~-~~~--~~~~~~~~~ws 248 (771)
...|+++++.. .. .+.+. +.+ .+.+...++|.
T Consensus 85 --------------------------------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 85 --------------------------------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp --------------------------------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred --------------------------------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 35677777632 21 12221 223 34567899999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCC
Q 004149 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG 328 (771)
|.+++ |+.+. +..| ..||.++.... ...+... ................+..+.|..
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~d~S~l~~~p~t 182 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPG---GFDLFVS----DDQDLDDDKLFVRDLSGLSYDPRT 182 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT----SS--EEE----E-HHHH-HT--SS---EEEEETTT
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccC---ccceeec----cccccccccceeccccceEEcCCC
Confidence 99887 77653 3333 24565553000 0000000 000000000111235667888988
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecC
Q 004149 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
..|+.+|... ..|..+|.+
T Consensus 183 ~~lliLS~es----------~~l~~~d~~ 201 (248)
T PF06977_consen 183 GHLLILSDES----------RLLLELDRQ 201 (248)
T ss_dssp TEEEEEETTT----------TEEEEE-TT
T ss_pred CeEEEEECCC----------CeEEEECCC
Confidence 8888888764 457777743
No 403
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.27 E-value=0.0087 Score=50.43 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~ 767 (771)
..|+|++.++.|+..|.+.++.+.+.|.. .+++.+++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 58999999999999999999999999875 589999999999764 222355667777775
No 404
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.25 E-value=0.02 Score=60.27 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=88.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCC-C-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004149 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSL-S-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG-g~~~~~~-~-~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~ 588 (771)
.+.+..+....=++|.+..+. ....|+.+++-| |+....+ . .-........+.|..|+..++|- ||.+..-..
T Consensus 62 hF~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~ 137 (514)
T KOG2182|consen 62 HFDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGD 137 (514)
T ss_pred hhhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCC
Confidence 343444444444566665442 345688888877 3332111 1 11234556678899999999997 665432111
Q ss_pred C------CCccccchhhHHHHHHHHHHcCC-CCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCcc
Q 004149 589 P------GKVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ~------~~~~~~~~~D~~~~i~~l~~~~~-~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~ 651 (771)
. .-...+.+.|+..+|+.+..+.. -+..+.+.+|.|+-|.+++++=.++|+++.++|+.++.+
T Consensus 138 ~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 138 LSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 1 11123457888888888877653 444599999999999999999999999998888776543
No 405
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.24 E-value=0.14 Score=55.46 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.2
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|..+|+ ++++. +++.-. .+..+.||+||+.+++.+..
T Consensus 127 ~i~~yDw-----------------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDW-----------------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-T-----------------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEh-----------------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 4888888 55543 444322 26789999999999999755
No 406
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.20 E-value=0.31 Score=48.92 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=115.8
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+.+..+++-|-.++++..+.+ ....|| ..|+.... ++..+ +...++.+|+---+|+...+++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCC
Confidence 34567778888887777654333 255666 33433322 22111 1125888998888887776666
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004149 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ -|+..+.+-......+.+-..-...-|-....+++..+..+.+||+.+....... ......+.++.+-|-.-+
T Consensus 216 ~VK--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq- 291 (460)
T KOG0285|consen 216 QVK--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ- 291 (460)
T ss_pred eeE--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc-
Confidence 433 1222111111111111111111112222334556667889999999887544441 334556788888886666
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004149 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ -++.|..+|+- .+.....||.+..+++.....|+-..+|-.
T Consensus 292 ---vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 292 ---VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENLFASA 337 (460)
T ss_pred ---eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhhhhcc
Confidence 77665 33468888872 556678899999999999999987654433
Q ss_pred ecCCCCCCCCccccccceeeecCCCCC
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.+ .|..+++.-|..
T Consensus 338 s~d------------nik~w~~p~g~f 352 (460)
T KOG0285|consen 338 SPD------------NIKQWKLPEGEF 352 (460)
T ss_pred CCc------------cceeccCCccch
Confidence 332 366666655543
No 407
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=96.14 E-value=0.11 Score=54.02 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+....|||.-+.++.+...+ + .+.+|+-........... .|. .+..+++|||-...|+..-.
T Consensus 167 vRll~ys~skr~lL~~asd~-G---~VtlwDv~g~sp~~~~~~-~Hs-----AP~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGMSPIFHASE-AHS-----APCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC-C---eEEEEeccCCCcccchhh-hcc-----CCcCcceecCCccceEEEec--------
Confidence 56889999999988776544 3 667774322233332211 110 01258999997766654311
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
-+..|+++|....+...- +..+.....++|+++|.. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 235789999876543332 233445678999999986 665
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCC
Q 004149 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpD 327 (771)
.. ..++|+.+|+-. ....+..+..+...+...+|=|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 43 345899999831 22334556666666777777553
No 408
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=96.14 E-value=0.012 Score=62.35 Aligned_cols=91 Identities=22% Similarity=0.283 Sum_probs=65.4
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004149 535 SCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...-+|+.+|||++..... ....+. ++..+.|+-|+.+||.-.++ .......+++.-|+-|++.+..
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999998765322 222333 34457899999999987543 3445568999999999998632
Q ss_pred ---CCCCeEEEEEcChhHHHHHHHHHh
Q 004149 613 ---ANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 613 ---~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
.-.+||++.|.|.||.+.+..+.+
T Consensus 463 llG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 463 LLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhCcccceEEEeccCCCcceeehhHHH
Confidence 356899999999999987766543
No 409
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.08 E-value=0.055 Score=50.90 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=107.1
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
....|..|+...++-.....+.+|++..|....-- ......+-.++-+.|+.+ ++-.+ .+
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnsk----f~s~G---------------gD 80 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSK----FASCG---------------GD 80 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccc----cccCC---------------CC
Confidence 34557777666666667789999999888765541 222335667788888888 66543 33
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..++++|+ ++|+ .+++..+.+.+..++|+.+.+-++-.+.+ ..+..||-.+
T Consensus 81 k~v~vwDV-----------------~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD-----------~s~r~wDCRS 132 (307)
T KOG0316|consen 81 KAVQVWDV-----------------NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFD-----------SSVRLWDCRS 132 (307)
T ss_pred ceEEEEEc-----------------ccCeeeeecccccceeeEEEecCcceEEEecccc-----------ceeEEEEccc
Confidence 37888888 6665 57888888889999999888766554444 2356666544
Q ss_pred CCC--CCCccce-eeEEec-------ccccCCCC-----------CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004149 359 NGN--FSSLEKI-VDVIPV-------VQCAEGDC-----------FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 359 ~~~--~~~~~~~-~~~~~~-------~~~~~~~~-----------f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~ 417 (771)
... .|+..+. +.+..+ +....++. +.-.....+...+||+||.-++.++- + ..|-.
T Consensus 133 ~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l-~--stlrL 209 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSL-D--STLRL 209 (307)
T ss_pred CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeec-c--ceeee
Confidence 433 2222111 111111 10001111 11011223567899999997665543 3 34666
Q ss_pred EECCCCcEEEec
Q 004149 418 VNVSSGELLRIT 429 (771)
Q Consensus 418 ~d~~tg~~~~l~ 429 (771)
+|..||++-..-
T Consensus 210 lDk~tGklL~sY 221 (307)
T KOG0316|consen 210 LDKETGKLLKSY 221 (307)
T ss_pred cccchhHHHHHh
Confidence 788888765443
No 410
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.07 E-value=0.067 Score=58.18 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+-+|-...+||-. .+-+.+++ +......++..... .+.+++||+||+++|..-..
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----GCvVVlfn~~~~tQ~hlvnssRk---------~~t~vAfS~~GryvatGEcG------ 99 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----GCVVVLFNVDSCTQSHLVNSSRK---------PLTCVAFSQNGRYVATGECG------ 99 (1080)
T ss_pred CCcccccccccceeecc-----CcEEEEEcccccchhheecccCc---------ceeEEEEcCCCcEEEecccC------
Confidence 34456677777788753 23344444 32333344443222 24799999999988773111
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004149 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+.+-||+++.-. +..+ ......+.-++|||.+++ |
T Consensus 100 ------------------------------------~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----v 137 (1080)
T KOG1408|consen 100 ------------------------------------RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----V 137 (1080)
T ss_pred ------------------------------------CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----E
Confidence 34678889987644 3334 456678889999999998 9
Q ss_pred EEEeecCc
Q 004149 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+-++..++
T Consensus 138 vSVGsQHD 145 (1080)
T KOG1408|consen 138 VSVGSQHD 145 (1080)
T ss_pred Eeeccccc
Confidence 98875444
No 411
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.42 Score=51.08 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=62.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.+..|+-||=.++..... .+++++|+.+.+...+- .. ...+| +-.+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~k-dh-----------~~e~p------i~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVK-DH-----------GYELP------IKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeec-cc-----------CCccc------eeeeccc
Confidence 47788999999888765544 36999999886653321 11 11222 3455664
Q ss_pred cC--CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004149 398 SD--GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 398 ~d--g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~ 466 (771)
+. ...| ++. ......|| |..+|+.-.......++...-+-++++.+++.-.++.. .+.|+-++.
T Consensus 281 ~~~~q~~v-~S~-Dk~~~kiW--d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m-~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKV-VSM-DKRILKIW--DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM-HTYYIPSLG 346 (703)
T ss_pred ccCCCceE-Eec-chHHhhhc--ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc-eeEEccccC
Confidence 43 2223 332 22223344 77777766554444444444555666655555444444 345554444
No 412
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.00 E-value=0.51 Score=46.76 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=103.5
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..=+|++|++++|...+.. ...+|.+. +.+.-...+.- ..| |....++.|+|.+.+|+-.+.++..-
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~~-~~~~w~~~htl-s~H-----d~~vtgvdWap~snrIvtcs~drnay-- 80 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSML-GADLWEPAHTL-SEH-----DKIVTGVDWAPKSNRIVTCSHDRNAY-- 80 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEec-CCCCceeceeh-hhh-----CcceeEEeecCCCCceeEccCCCCcc--
Confidence 356679999999999876542 23344443 22322222221 112 11236899999999998876555322
Q ss_pred CccCCCCCCCCCCccCCCCCC------------cccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccce
Q 004149 180 TFSLGSTKGGSSDKDCNSWKG------------QGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQ 244 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~ 244 (771)
.|... ....|+. -+.|+|.-..-.++.+...|.|+=.+..+-= +..+.|-...+..
T Consensus 81 Vw~~~---------~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 81 VWTQP---------SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred ccccC---------CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 12110 0111111 1225554444444555555555554443311 1111344446778
Q ss_pred EEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcccccee
Q 004149 245 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPR 323 (771)
Q Consensus 245 ~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~ 323 (771)
..|.|++-. |+..+-+.. | |--..|+-+++..| ....| ..+..=|+ ........+-+....
T Consensus 152 ldWhpnnVL----laaGs~D~k--------~--rVfSayIK~Vdekp-ap~pW---gsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 152 LDWHPNNVL----LAAGSTDGK--------C--RVFSAYIKGVDEKP-APTPW---GSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred eeccCCcce----ecccccCcc--------e--eEEEEeeeccccCC-CCCCC---ccCCcHHHHHHhhccCCCceeeeE
Confidence 899998765 554431111 1 11133444442110 00000 00000000 111223345578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|||+|..|+|...+. .+.+.|....
T Consensus 214 fs~sG~~lawv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred eCCCCCEeeEecCCC-----------ceEEeecCCC
Confidence 999999999999875 3666665543
No 413
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=95.92 E-value=0.024 Score=59.38 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004149 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.+|++||.... ...+......++..|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58999996332 33555555567777777 888887753110 111122445555555555442 35
Q ss_pred CeEEEEEcChhHHHHHHHHHhCC--CceeEEEecCCcc
Q 004149 616 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 651 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p--~~~~a~v~~~p~~ 651 (771)
.++.++||||||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999998877 7888888777643
No 414
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.81 E-value=0.067 Score=53.55 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=49.1
Q ss_pred ceEEEEEccCC-ceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSG-EVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..||.+|...= .+..+ ..+ ...+.++.|||-|+. +|-.+ +++ .|.++..
T Consensus 251 ~nlY~~DmR~l~~p~~v--~~dhvsAV~dVdfsptG~E----fvsgs-------------yDk--sIRIf~~-------- 301 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNV--HKDHVSAVMDVDFSPTGQE----FVSGS-------------YDK--SIRIFPV-------- 301 (433)
T ss_pred ccceehhhhhhcccchh--hcccceeEEEeccCCCcch----hcccc-------------ccc--eEEEeec--------
Confidence 67888886431 12222 112 224668899999998 77666 233 3444444
Q ss_pred hhhhhcCCCCCCcceecCC--CCccccceeecCCCCEEEEEecC
Q 004149 296 ELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~--~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
..+..+.+.. .-..+..+.||-|.++|+-.+.+
T Consensus 302 ---------~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 302 ---------NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ---------CCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 3343333322 23358899999999988766554
No 415
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.34 Score=54.41 Aligned_cols=232 Identities=11% Similarity=-0.012 Sum_probs=138.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|.|.--+|+..-.....+ .|+........++.++......+.|-+...--+++..+..|-||+....+..--.
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL- 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL- 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-
Confidence 5899999999888765555443 4544344444455555555555566555433344555678888988766543221
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+....|.+.=-+ |+-.+ .+..|.+++. .+.. +-.||.
T Consensus 90 ~GHlDYVRt~~FHheyPW----IlSAS---------------DDQTIrIWNw-----------------qsr~~iavltG 133 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPW----ILSAS---------------DDQTIRIWNW-----------------QSRKCIAVLTG 133 (1202)
T ss_pred ccccceeEEeeccCCCce----EEEcc---------------CCCeEEEEec-----------------cCCceEEEEec
Confidence 233346778888888787 77666 2336777776 5555 467888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc------------------eeeEEeccc
Q 004149 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK------------------IVDVIPVVQ 376 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~~~~~~ 376 (771)
++..+...+|.|....|+-.|-+. .+.+||+.+=..+....+ .+.+++.+-
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999888888888765 377777755333332222 111222221
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe--cCCCCCceeeEEeecCCEE
Q 004149 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l--~~~~~~~~~~~~s~d~~~l 447 (771)
.. ++.++.-.+|.|--- |+++..++....||+++-. ...+.= ......++...|.|..+.|
T Consensus 203 EG--------HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 203 EG--------HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQDLI 265 (1202)
T ss_pred cc--------cccccceEEecCCcc-eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCcccee
Confidence 11 223455566777654 6677777778889998853 222211 1122244445555554433
No 416
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.74 E-value=0.035 Score=54.93 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=63.7
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCC
Q 004149 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 616 (771)
|+++++|+..+. ...|..++..|... ..|+..+.+|.+... .....++++.+.+ +.|.+.. ...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~Q--P~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRVQ--PEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHhC--CCC
Confidence 568899996554 34566677777665 889999999843211 1122355554433 3333321 245
Q ss_pred eEEEEEcChhHHHHHHHHHhC---CCceeEEEecCCccc
Q 004149 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~a~v~~~p~~~ 652 (771)
.+.|.|+|+||.+|.-+|.+- .+.++.++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888753 335666666655544
No 417
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=1.7 Score=49.10 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=40.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+...+||+||.+|+- +|...++.+| .+...++... +..-+ ..+.||||+..-+.+.++
T Consensus 252 ~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRLgs~I----------~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGKKQFLPRLGSPI----------LHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cccceeEEecCCceEee-----cccceEEEEEeecCCCcccccccCCee----------EEEEEcCCCCeEEEEecC
Confidence 45788999999999864 3556689999 3333344433 22222 689999999987776543
No 418
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.73 E-value=2.4 Score=41.91 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=36.6
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004149 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 399 dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~~l~~~~~~~~~ 469 (771)
++ .+++... .+. ++.+|+.+|+.. ...... ........+++.|++... -..++..++.+++
T Consensus 173 ~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~-~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPIS-GIYSLPSVDGGTLYVTSS----DGRLYALDLKTGK 233 (238)
T ss_dssp TT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS--ECECEECCCTEEEEEET----TTEEEEEETTTTE
T ss_pred CC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCC-CccCCceeeCCEEEEEeC----CCEEEEEECCCCC
Confidence 44 5655543 332 677799999855 333322 122235678888877762 3678988887654
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.71 E-value=1.8 Score=42.94 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=68.5
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
+++.|+||.+.|+-+.+. ..+|.-++.++.-++.++
T Consensus 89 S~LTynp~~rtLFav~n~-------------------------------------------p~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNK-------------------------------------------PAAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCC-------------------------------------------CceEEEEecCCceEEEec-
Confidence 799999999988776443 367788887776666663
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc------c
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 309 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 309 (771)
...-.....+.|.-+|+ .+.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~-----fvi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQ-----FVIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCE-----EEEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 33333455677876665 23222 1 233555554421 1111 1
Q ss_pred eecCC--C-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 310 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 310 ~~lt~--~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
..|-. . +......+|+|....|+|...++ ...||.++
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---------P~~I~~~~ 210 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---------PIGIFEVT 210 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccC---------CcEEEEEe
Confidence 11211 1 33467899999999998888775 24577776
No 420
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=0.61 Score=49.90 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=64.0
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 004149 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 317 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-- 317 (771)
..+..+.|+-||-. +++.+ ..+++|++|| -+.++-.+-.+..
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778889988876 66554 4458999998 4444433333333
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+....|-+.+.+=..++.+. .-|.+||-.+|+.....+ +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 245556644422222223222 235667766666522111 11235677888
Q ss_pred cCCCEEEEEeeeCCeeEEEEEE
Q 004149 398 SDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 398 ~dg~~l~~~~~~~~~~~l~~~d 419 (771)
|++. ++|.+...+....|.+.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8887 66777766666666554
No 421
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.63 E-value=1.2 Score=44.25 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=65.9
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++|-++|+ ...+ +..+..+...+...+.+-+|..||..+... .-|.++|
T Consensus 158 ~GqvQi~dL-----------------~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFd 210 (346)
T KOG2111|consen 158 TGQVQIVDL-----------------ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFD 210 (346)
T ss_pred cceEEEEEh-----------------hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEE
Confidence 357888888 3322 355666777888999999999999888763 3477888
Q ss_pred cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..+|+..+- +.... -...++.++||||+..|.++ +..++.++|.+..
T Consensus 211 t~~g~~l~E----------~RRG~-------d~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 211 TEDGTLLQE----------LRRGV-------DRADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCcEeee----------eecCC-------chheEEEEEeCCCccEEEEE-cCCCeEEEEEeec
Confidence 877765321 11100 01134577899999877554 5688889998864
No 422
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.63 E-value=0.063 Score=57.57 Aligned_cols=136 Identities=17% Similarity=0.178 Sum_probs=81.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH---------------HCCcEEEEECCCCCCCC
Q 004149 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS---------------SVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la---------------~~G~~V~~~d~rG~~~~ 580 (771)
..+..+..|++.... .....|+||++-|||+.....+.....-.|. .+-..++-.|.+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 457789888887652 4456799999999998764322211111110 11145777777744444
Q ss_pred ChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEEecCC
Q 004149 581 GEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v~~~p 649 (771)
.-+-.......-.....+|...++ +|+.+.+......+.|.|-|++|..+-.+|.. . .-.+++.++.+|
T Consensus 132 SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg 211 (454)
T KOG1282|consen 132 SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNG 211 (454)
T ss_pred cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCc
Confidence 332111111111122356666555 56666676677889999999999777666542 1 124799999999
Q ss_pred ccch
Q 004149 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
+.+.
T Consensus 212 ~td~ 215 (454)
T KOG1282|consen 212 LTDP 215 (454)
T ss_pred ccCc
Confidence 8764
No 423
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.62 E-value=2.9 Score=49.27 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=50.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.+||-+ |...... .+.......++|-|.|.. |+.+... ...+.|..+.-
T Consensus 222 RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~----iA~iq~~------------~sd~~IvffEr---------- 273 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSL----IAAIQCK------------TSDSDIVFFER---------- 273 (1265)
T ss_pred eeEEEeccc-chhhccc-CcccccccceeecCCCCe----Eeeeeec------------CCCCcEEEEec----------
Confidence 567888876 5443331 334445678899999988 7776522 22234555553
Q ss_pred hhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecC
Q 004149 298 ELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 298 ~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+|-+. .+.......+....|+.++.-|+.....
T Consensus 274 -------NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 274 -------NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred -------CCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 22221 1122233337889999999998876554
No 424
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.59 E-value=0.088 Score=57.94 Aligned_cols=142 Identities=11% Similarity=0.044 Sum_probs=91.5
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+-.||+...+-+... .....++.++.|||--.. ..+... ..+.|-.+|+-
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~--------------dsG~lqlWDlR------- 207 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIH--------------DSGYLQLWDLR------- 207 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEec--------------CCceEEEeecc-------
Confidence 4467888998776655552 223447889999996543 333332 22245566651
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
... -..+++.+.+.+....|+|++.+||...++ ..+.+||+.++....+. ++..
T Consensus 208 ---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~-----tInT 262 (839)
T KOG0269|consen 208 ---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKH-----TINT 262 (839)
T ss_pred ---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCcccee-----EEee
Confidence 233 347789999999999999999999877744 35888888776554321 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
+ ..+..+.|-|+-.+.+.+.+-.+...++.+|+.
T Consensus 263 i-------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 I-------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred c-------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 1 024577899988877777665556667777764
No 425
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.54 E-value=0.36 Score=48.86 Aligned_cols=117 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eec
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAV 233 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l 233 (771)
..++|||..+.+++... ....|.+||+..+.- ...
T Consensus 261 EDLqWSptE~~vfaScS-------------------------------------------~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCS-------------------------------------------CDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeee-------------------------------------------cCceEEEEEecCCCccceeE
Confidence 68999999988877633 236888999877621 112
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004149 234 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 234 ~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
+ ......+.-+.|+-+-.. |++.+ .++.+-++||-.. ..++ +-.+
T Consensus 298 ~-kAh~sDVNVISWnr~~~l----LasG~---------------DdGt~~iwDLR~~--------------~~~~pVA~f 343 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNRREPL----LASGG---------------DDGTLSIWDLRQF--------------KSGQPVATF 343 (440)
T ss_pred e-eccCCceeeEEccCCcce----eeecC---------------CCceEEEEEhhhc--------------cCCCcceeE
Confidence 1 223345667789876664 66654 2235666665211 2232 3345
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.-+...+.+..|+|....++-.+.. ..+|-+||+...
T Consensus 344 k~Hk~pItsieW~p~e~s~iaasg~----------D~QitiWDlsvE 380 (440)
T KOG0302|consen 344 KYHKAPITSIEWHPHEDSVIAASGE----------DNQITIWDLSVE 380 (440)
T ss_pred EeccCCeeEEEeccccCceEEeccC----------CCcEEEEEeecc
Confidence 5567789999999977666555533 357888887543
No 426
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.48 E-value=0.43 Score=50.71 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=74.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEE-EEECCCCCCCCChhhhhcCCCCccccc
Q 004149 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL-LIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V-~~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+.++- +++-| ++-+.|+.|++-|.-.. .+|.. .-.|.+.|.-. +.-|.|-.+| +|. .+..+
T Consensus 275 reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aFY------lGs~e 336 (511)
T TIGR03712 275 RQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AFY------LGSDE 336 (511)
T ss_pred CCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---eee------eCcHH
Confidence 44453 34445 44567999999983322 22321 12344566654 4557776333 321 12112
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEecCCccchhhhhcCC
Q 004149 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~~p~~~~~~~~~~~ 660 (771)
. +.+.+.|+.-.+.-..+.+.+.|.|.|||.+-|+.++++. ...|+|+.-|.+++-.+....
T Consensus 337 yE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n~ 399 (511)
T TIGR03712 337 YEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASRM 399 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhccc
Confidence 2 2344455444443347888999999999999999999874 357899999999887665433
No 427
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.38 E-value=0.35 Score=50.12 Aligned_cols=171 Identities=14% Similarity=0.101 Sum_probs=100.8
Q ss_pred cCceEEEEEccCCc---eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+||+.+.+ .....+++....++...|+|-... -++.+. .++.|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 44788899985332 222224777778899999998766 455441 2346888888
Q ss_pred hhhhhhhhcCCCCCCccee-cCC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC--CCccc
Q 004149 293 EASELELKESSSEDLPVVN-LTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~-lt~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~ 367 (771)
+++.... ++. ......+..|+.+...++|..+-. .+.++|+.+++.. .+.
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~-- 319 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLR-- 319 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhh--
Confidence 4443322 222 333466778888888787776542 3556676665531 110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-Eec--CCCCCceeeEEeecC
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RIT--PAESNFSWSLLTLDG 444 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~--~~~~~~~~~~~s~d~ 444 (771)
+...-+.++++.|--.+++.+++-++...||-+.--.++.. .|. ...-.+...-|||.+
T Consensus 320 ------------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 320 ------------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred ------------------hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 01112456667777777888887777777885532223322 121 222245667899998
Q ss_pred CEEEEEEe
Q 004149 445 DNIIAVSS 452 (771)
Q Consensus 445 ~~l~~~~s 452 (771)
..|+.++.
T Consensus 382 gtl~TT~~ 389 (498)
T KOG4328|consen 382 GTLLTTCQ 389 (498)
T ss_pred CceEeecc
Confidence 88766653
No 428
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.36 E-value=1.9 Score=43.95 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+..|.+||+.+|....- .........+..+|..+. |+..+ .. .+|.++|.-.
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs-------------sd--r~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS-------------SD--RHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC-------------CC--CceeecCCCC------
Confidence 457999999998876544 344456777889998885 55544 22 2677777521
Q ss_pred hhhhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 296 ELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.++.. ..+..+..-+.+..|||-..++ |++... .+.+.+||+.+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~-~~S~S~---------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQ-LVSGSY---------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceE-EEEEec---------CCeEEEEEeccCC
Confidence 23333 4566777789999999987765 333221 2457788876644
No 429
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.077 Score=50.91 Aligned_cols=111 Identities=9% Similarity=0.103 Sum_probs=57.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCC---------
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPG--------- 590 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~-~~~~--------- 590 (771)
-+...+.|. +..|+.+.+-|-+...+... ..+...+..+|...+...-+- ||+.-.. .+..
T Consensus 102 A~~~~liPQ-----K~~~KOG~~a~tgdh~y~rr-~~L~~p~~k~~i~tmvle~pf---Ygqr~p~~q~~~~Le~vtDlf 172 (371)
T KOG1551|consen 102 ARVAWLIPQ-----KMADLCLSWALTGDHVYTRR-LVLSKPINKREIATMVLEKPF---YGQRVPEEQIIHMLEYVTDLF 172 (371)
T ss_pred eeeeeeccc-----CcCCeeEEEeecCCceeEee-eeecCchhhhcchheeeeccc---ccccCCHHHHHHHHHHHHHHH
Confidence 334445553 34576666665332222222 123445677888887777654 4442110 0000
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCCCceeE
Q 004149 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a 643 (771)
..|...++++...+.|-.+ ..-.+.+|+|-||||.+|.++...++.-++-
T Consensus 173 ~mG~A~I~E~~~lf~Ws~~---~g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 173 KMGRATIQEFVKLFTWSSA---DGLGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred HhhHHHHHHHHHhcccccc---cCcccceeeeeecccHHHHhhcccCCCCccc
Confidence 0111112222222222111 2346799999999999999998877654443
No 430
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.34 E-value=3.4 Score=41.17 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=50.3
Q ss_pred CceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 217 QPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+.+|.+|++..=+. ..+ -+....+..++..|.|| |+..- .++..|..++|
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsV--------------g~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSV--------------GGDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEE--------------cCCceeeeehh--------
Confidence 36788888754322 223 23344588999999999 55432 13346777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
-.|..-.+..-......+.|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444332222222334559999999988776654
No 431
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.34 E-value=0.13 Score=55.65 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=49.1
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--------------------CC-EEEEEeCCCCccCCCCCChHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKG--------------------VE-TKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g--------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
..++||..|..|.+||....+.+.+.|+-.+ .+ .+++.+-++||... ......+..+
T Consensus 347 ~irVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp--~qP~~al~m~ 424 (433)
T PLN03016 347 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE--YRPNETFIMF 424 (433)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC--CCHHHHHHHH
Confidence 3799999999999999999999988885211 12 67788889999884 3566777888
Q ss_pred HHHHHH
Q 004149 763 GLWFKK 768 (771)
Q Consensus 763 ~~wl~~ 768 (771)
..|++.
T Consensus 425 ~~Fi~~ 430 (433)
T PLN03016 425 QRWISG 430 (433)
T ss_pred HHHHcC
Confidence 888753
No 432
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.24 E-value=0.031 Score=54.44 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC----CceeEEEecCC
Q 004149 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 649 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~a~v~~~p 649 (771)
..|++++.+...-.+++|.+.|||.||.+|.+++...+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 44555544421112446999999999999999988743 45666665443
No 433
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.19 E-value=1.3 Score=43.43 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCC
Q 004149 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..--+||+++|. -++| +..+..+..++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 566788988873 3566 677778999999997775
No 434
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=95.15 E-value=0.032 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCeEEEEEcChhHHHHHHHHHh
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877653
No 435
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=0.066 Score=59.39 Aligned_cols=70 Identities=19% Similarity=0.363 Sum_probs=40.9
Q ss_pred CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCC---CCeEEEEEcChhHHHHHHHHHhCC
Q 004149 566 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 566 G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d---~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
.|..+++|+-+. + ....+.......+=+.+||+++.+.. ..+ |..|.++||||||.+|..++.. |
T Consensus 132 ~~DFFaVDFnEe--~-----tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-k 203 (973)
T KOG3724|consen 132 SFDFFAVDFNEE--F-----TAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-K 203 (973)
T ss_pred ccceEEEcccch--h-----hhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-h
Confidence 356667776431 0 11222332333555667777766532 123 6679999999999999877653 5
Q ss_pred CceeE
Q 004149 639 DKFVA 643 (771)
Q Consensus 639 ~~~~a 643 (771)
....+
T Consensus 204 n~~~~ 208 (973)
T KOG3724|consen 204 NEVQG 208 (973)
T ss_pred hhccc
Confidence 44433
No 436
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.01 E-value=1.5 Score=51.52 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=35.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+....|--|+..|.++...+ .++.++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 45555666666665554332 344444 222222233334444 6899999999999987654
No 437
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=4 Score=40.53 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=36.8
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
+..++|+|=-.++ ++...+|-..+| |+.+. ++.++..-...++...|+.||..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3567788875544 454445555555 55443 35555555445677889999998876654
No 438
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=94.92 E-value=0.43 Score=46.66 Aligned_cols=156 Identities=12% Similarity=0.143 Sum_probs=97.2
Q ss_pred CCccCceEEEEEccCCceee---c-------c----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 213 AGKRQPSLFVININSGEVQA---V-------K----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~---l-------~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
.+..+..|.+||++...-.. + - .......+..+.|-|-... +...+. .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtssS--------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSSS--------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeeccc--------------c
Confidence 44567889999987543111 1 0 1122346778899997776 555442 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--EEEEEecCCCCCCCCccccccceeeec
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~--~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+..|-++|. ++-+......-++.+.+-+|||=.. .|+-...+ ..++.+.|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----------~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----------DVQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecC----------CCcEEEEec
Confidence 225666665 4444333333445566677887554 23333333 357888999
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004149 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
++|...-...+.. .++-.+.|||-..+++++.+.++..+||-|...+|-...+...+
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8887533322221 13457789999999999999999999999988888777665443
No 439
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.88 E-value=3.7 Score=43.37 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=82.0
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...+|.+..+.++....-.+.+..-.+.-+.+||-.+. ++.++- ..+.+.++|+
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~----lL~~as--------------d~G~VtlwDv-------- 194 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF----LLSIAS--------------DKGAVTLWDV-------- 194 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccce----eeEeec--------------cCCeEEEEec--------
Confidence 34677777777765322211333445567789998887 766552 2235667776
Q ss_pred hhhhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004149 296 ELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.+... ..+..+...+....|||-...|+..-.- ...|+++|...... +...
T Consensus 195 ---------~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~----------Dkki~~yD~~s~~s---~~~l----- 247 (673)
T KOG4378|consen 195 ---------QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY----------DKKINIYDIRSQAS---TDRL----- 247 (673)
T ss_pred ---------cCCCcccchhhhccCCcCcceecCCccceEEEecc----------cceEEEeecccccc---ccee-----
Confidence 33322 2334455667889999987765433321 35799999765332 1111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.|..-+..++|+++|.+|+.-. .+.+|+.+|+..
T Consensus 248 ------------~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 248 ------------TYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRS 281 (673)
T ss_pred ------------eecCCcceeeecCCceEEEeec---CCceEEEEeccc
Confidence 0222356889999998665432 355788888754
No 440
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.58 Score=52.58 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceE--EEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004149 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEK--EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
....++||.|+.+|-.-.. | + +.+| +-+ .... .+.+.. .|..| .+++||+||.+|+...
T Consensus 208 ~t~~~~spn~~~~Aa~d~d--G--r-I~vw~d~~~~~~~~t~t~lHW-H~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD--G--R-ILVWRDFGSSDDSETCTLLHW-HHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccC--C--c-EEEEeccccccccccceEEEe-ccccc------ceeEEecCCceEeecc-----
Confidence 4568899999999864322 2 2 5566 433 1111 111111 11122 6999999999887632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCC
Q 004149 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~ 253 (771)
....|.+|.+++++.+-| |. ...+..++||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 347899999999994444 43 346788999999996
No 441
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.71 E-value=6.4 Score=41.14 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=52.5
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCc-----cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004149 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+....+.+++|||++|+.+....-...|.. ....+|+.+|..+.+.. ... -..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 345788999999998766655431111111 11256778887663311 000 011111000000 1124
Q ss_pred CCCCccccCCCEEEEEee----eCCeeEEEEEECCC
Q 004149 391 ILSNPWLSDGCTMLLSSI----WGSSQVIISVNVSS 422 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~----~~~~~~l~~~d~~t 422 (771)
+..+.+.+|++.|++... .....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 667889999996666555 23456799999754
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.62 E-value=2.1 Score=41.80 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=103.1
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|-.+|..+|++..+. +........+.--|||.. .++- ....|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd---------------~~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD---------------TGLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec---------------CcceeEEecC--------
Confidence 3467888999999998884 555556777888899974 3321 1115777775
Q ss_pred hhhhhcCCCCCCcceecC--C--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLT--E--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++.+.++.+ . .......++|.++|. |.|+.+. |.++ ++|-.++ +
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~~-----------~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPARN-----------V 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCcccC-----------c
Confidence 566554433 2 234577899999998 7888775 3221 2222211 1
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~d~~~l~~ 449 (771)
+.++..+.. ...+.+|-.|||. ++|++-.+ ..|.+||..++..+.+..... ..+-..++..-+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222222211 1346788899997 66665433 358888998887777765443 2233344433344544
Q ss_pred EEeCCCCCCeEEEEEec
Q 004149 450 VSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 450 ~~s~~~~p~~l~~~~~~ 466 (771)
+. -...++++++..
T Consensus 249 tt---wg~g~l~rfdPs 262 (353)
T COG4257 249 TT---WGTGSLHRFDPS 262 (353)
T ss_pred ec---cCCceeeEeCcc
Confidence 42 233457776643
No 443
>PLN02209 serine carboxypeptidase
Probab=94.50 E-value=0.36 Score=52.34 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=76.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH--------------HHH------HHCCcEEEEECCCC
Q 004149 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL--------------AFL------SSVGYSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~--------------~~l------a~~G~~V~~~d~rG 576 (771)
.+..+..|++.... .....|+|+++-|||++.......... ..+ -.+-..++-+|.+-
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPv 127 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPV 127 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCC
Confidence 34567777776542 345679999999998765321110000 001 01225788888775
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHHh----C------CCceeEEE
Q 004149 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~a~v 645 (771)
..|+......... .....+++|+..++....+ .+.....+++|+|.|+||..+-.+|.. . +-.+++++
T Consensus 128 GtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~ 206 (437)
T PLN02209 128 GSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYV 206 (437)
T ss_pred CCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEE
Confidence 5555432111000 1111235666666654433 344455689999999999877766542 1 11468999
Q ss_pred ecCCccch
Q 004149 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 207 igng~td~ 214 (437)
T PLN02209 207 LGNPITHI 214 (437)
T ss_pred ecCcccCh
Confidence 99997764
No 444
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.48 E-value=2.5 Score=46.59 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=33.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+.+.+|.-||++|+.+..++. +++=.-+|+ ++..-. .+. ......||||.+.++|.
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGa----vIVGsvdGN--RIwgKeLkg~--------~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGA----VIVGSVDGN--RIWGKELKGQ--------LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCC----EEEEeeccc--eecchhcchh--------eccceeecccHHHHHhh
Confidence 4678899999999999876541 222111221 121110 000 11367899999988885
No 445
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=94.46 E-value=0.13 Score=55.15 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=55.1
Q ss_pred cchHHHHHHHHCCcEE----EE--ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhH
Q 004149 554 SYSKSLAFLSSVGYSL----LI--VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 627 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V----~~--~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG 627 (771)
.|..+++.|.+.||.. ++ .|.|-+.. ....-...+...|+.+.+.. ..+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 5778899999988753 22 45564321 01112455666666665542 5799999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEecCCc
Q 004149 628 FLTTHLIGQAPD------KFVAAAARNPL 650 (771)
Q Consensus 628 ~~a~~~a~~~p~------~~~a~v~~~p~ 650 (771)
.++..++...+. .+++.|.+++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998877643 47778877664
No 446
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.34 E-value=0.19 Score=52.00 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=74.7
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec--C
Q 004149 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--T 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l--t 313 (771)
-....++..++.|||+++ ++-.+ ..+.|..+++..+.+..+.++.......-+..... .
T Consensus 139 ~~H~~s~~~vals~d~~~----~fsas---------------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~ 199 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR----VFSAS---------------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK 199 (479)
T ss_pred ccccCcceEEEeeccccc----eeecC---------------CCcceeeeehhcCcccccccccchhhhhccCCCCcccc
Confidence 345567888999999996 55444 22355555553222222222211000001111111 2
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004149 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+...+.|+||++|++...+ ..+.+|+..+.+..+...+.. ..+.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d-----------~~v~Iw~~~t~ehv~~~~ghr-------------------~~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRD-----------RHVQIWDCDTLEHVKVFKGHR-------------------GAVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCC-----------ceEEEecCcccchhhcccccc-------------------cceee
Confidence 344457788999999999986654 357788988877755433322 12445
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEEC
Q 004149 394 NPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 394 ~~~s~dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
++|-..-..| |+.+.+....+|.++.
T Consensus 250 L~fr~gt~~l-ys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 250 LAFRKGTSEL-YSASADRSVKVWSIDQ 275 (479)
T ss_pred eeeecCccce-eeeecCCceEEEehhH
Confidence 5665444445 4555566677777663
No 447
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=4.2 Score=40.44 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=40.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeE
Q 004149 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~l 167 (771)
..++..+|+||-+.|..+-+ ...+++++...|+..+.+.+.. .+ ....+.|.-+|+.+
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~-------DpE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FS-------DPETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cC-------ChhHeEEecCCEEE
Confidence 45889999999999955533 4578999998888877776643 21 11477787777644
No 448
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=94.26 E-value=0.076 Score=50.36 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=53.4
Q ss_pred CcEEEEECCCCCCCCChh-hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC----C--
Q 004149 566 GYSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P-- 638 (771)
Q Consensus 566 G~~V~~~d~rG~~~~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-- 638 (771)
-..|++|-||-..-.... ...............|+.+|.++.+++.. +...++|+|||.|+.+...++... |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 378999999964322111 00000112223457899999998777642 345899999999999999998754 2
Q ss_pred -CceeEEEecCCcc
Q 004149 639 -DKFVAAAARNPLC 651 (771)
Q Consensus 639 -~~~~a~v~~~p~~ 651 (771)
.+++|.++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2345555555543
No 449
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=94.09 E-value=6.9 Score=41.74 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=24.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+.+|++..+...... ......+..+.|+|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce
Confidence 67888888775554441 223556788899999984
No 450
>PRK13613 lipoprotein LpqB; Provisional
Probab=93.98 E-value=4.3 Score=45.88 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=58.6
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
.+.+|.||..+|+... ....+++-.+. .+.. ...+... .....|+|.++| .+..+ +...
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~-~~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLT-PGASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccC-CCCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 5566788988888742 12345543331 1212 1122222 346789999999 56544 4432
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004149 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...+++.+. ..|+... ++.+ ...| ..+..+..|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334444444 5554433 2222 1111 1348999999999999997643
No 451
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.85 E-value=3.5 Score=45.63 Aligned_cols=120 Identities=6% Similarity=-0.022 Sum_probs=63.1
Q ss_pred HHHHHHhhcCccccceEEEecC------CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc
Q 004149 28 SKLLQDFTNISSIDKAWTFNSG------NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA 101 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~------s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 101 (771)
.-+|.++.++|+.....++|.. +..++++++- ...+.++++. ..++..+.++... ..+..
T Consensus 14 ~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~G---------sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~ 79 (726)
T KOG3621|consen 14 APLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMG---------SSAGSVYLYN--RHTGEMRKLKNEG---ATGIT 79 (726)
T ss_pred cchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEe---------cccceEEEEe--cCchhhhcccccC---ccceE
Confidence 3466777777777766665532 2233344443 2345555543 4444444444332 11335
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceE---EEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK---EFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..-..|++...+|+....+ .-.++.+.. +.+.. ++.++....-. +.++.||+||+++++.
T Consensus 80 ~~~~vs~~e~lvAagt~~g--~V~v~ql~~-~~p~~~~~~t~~d~~~~~r------VTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTASG--RVSVFQLNK-ELPRDLDYVTPCDKSHKCR------VTALEWSKNGMKLYSG 142 (726)
T ss_pred EEEEecchhHhhhhhcCCc--eEEeehhhc-cCCCcceeeccccccCCce------EEEEEecccccEEeec
Confidence 5667899988888764432 222333332 22222 23322211112 3699999999999774
No 452
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.85 E-value=0.27 Score=53.93 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=95.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004149 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
+-|.|..++.-++.+...+.|.+||+... ...+.||.. ......+.|+|-|.+.|--+.. .=+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeA-k~vrtLtgh-----~~~~~sv~f~P~~~~~a~gStd-----td~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEA-KIVRTLTGH-----LLNITSVDFHPYGEFFASGSTD-----TDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhh-hhhhhhhcc-----ccCcceeeeccceEEecccccc-----ccceehhhh
Confidence 34666666777778888888999998432 233344333 2345667799999877432221 124555321
Q ss_pred --cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004149 134 --QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 134 --~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
........ ...+ ..+.|+|||++++-..++...+ .|+...++-.+.+..+........|-+.---
T Consensus 143 k~Gc~~~~~s~~~vv----------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVV----------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL 210 (825)
T ss_pred ccCceeeecCCccee----------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhh
Confidence 11222221 1111 5789999999998877754433 4443222222222222222222223222122
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004149 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+..+..+..+-.||+++=++..-. -+....+....|.|||+.
T Consensus 211 la~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred hccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 234456678889998764433221 233456778899999984
No 453
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.69 E-value=0.47 Score=51.47 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=85.2
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCC--CCCCCCccCCCCCCcccc-cCCcCccc-CCccCceEEEEEccCCcee
Q 004149 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGEVQ 231 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~~~~~ 231 (771)
..+..--+|+.|+..+.+.+.+ .|+.... -.......+..|..-..| ..+ .+++ ++.-...|++||+.++..+
T Consensus 77 NDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 77 NDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred hhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcchh
Confidence 4555556677777666655443 3332111 122334445566654555 222 2332 3334679999999988542
Q ss_pred eccCCCC-----------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004149 232 AVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 232 ~l~~~~~-----------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
.+. ... ..++.+++-.+.|. ++..+ .....|..+|.-
T Consensus 154 l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr------------ 201 (735)
T KOG0308|consen 154 LVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR------------ 201 (735)
T ss_pred hhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc------------
Confidence 221 111 11233334344442 22222 123367777751
Q ss_pred cCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 301 ESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 301 ~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...+..+|..+...++....++||++++-.+.+. .|.+||+..
T Consensus 202 ----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLgq 244 (735)
T KOG0308|consen 202 ----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLGQ 244 (735)
T ss_pred ----cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeeccc
Confidence 3345667777777899999999999998887764 477888754
No 454
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.56 E-value=14 Score=40.58 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=86.7
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCc--ceEEEecCCcc
Q 004149 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQ--LEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 145 (771)
+.+.+|.++..++.. +..++.-. ...+...+..|.--+++..+++- ++.+|+ .+. ..+.... ..
T Consensus 74 sDD~~IrVfnynt~e-kV~~FeAH-----~DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeG--H~ 140 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGE-KVKTFEAH-----SDYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEG--HE 140 (794)
T ss_pred cCCceEEEEecccce-eeEEeecc-----ccceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcC--cc
Confidence 444556665553331 22333222 25677888888777776554433 667772 222 2222221 11
Q ss_pred cccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC--cCcccCCccCceEEE
Q 004149 146 HGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED--WGETYAGKRQPSLFV 222 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~g~~~~~~~~~~l~v 222 (771)
| ....++|.| |-...|..+-+++.+ .|...........+.+..-.+-+.|-+- -.-.+++..+..|-+
T Consensus 141 H-------yVMqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 141 H-------YVMQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred e-------EEEEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 1 125889999 666777777666554 4554333333334444444444444332 224556667789999
Q ss_pred EEccCCceeeccCCCC-CCccceEEEecCCC
Q 004149 223 ININSGEVQAVKGIPK-SLSVGQVVWAPLNE 252 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~ 252 (771)
||-.+....+. ..+ ...+..+.|.|.=.
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP 240 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc
Confidence 99998875554 232 23455667777544
No 455
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=93.51 E-value=0.16 Score=45.54 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-------CCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-------p~~~~a~v~~~p~~ 651 (771)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4455666666666643 47899999999999999887642 14566666666654
No 456
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.49 E-value=9.7 Score=42.59 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=53.9
Q ss_pred cCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+..|.+|++++++...+. . ....+..+... +.. ++..+ + ...|-++|+
T Consensus 309 ~D~tVkVW~v~n~~~l~l~--~~h~~~V~~v~~~--~~~----lvsgs-------------~--d~~v~VW~~------- 358 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLL--RGHTGPVNCVQLD--EPL----LVSGS-------------Y--DGTVKVWDP------- 358 (537)
T ss_pred CCceEEEEeccCcceEEEe--ccccccEEEEEec--CCE----EEEEe-------------c--CceEEEEEh-------
Confidence 4589999999999887773 3 34455555554 443 44443 1 125666665
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..++ ...|+.+.+.+.+..+.+. ..++-.+.+ ..|.+||+.+.
T Consensus 359 ----------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 359 ----------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred ----------hhceeeeeecCCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 4444 3566666666776655443 444444433 23666666665
No 457
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.33 E-value=9.7 Score=38.15 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=59.3
Q ss_pred cCceEEEEEccCCce---eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+.|+...+. ..+ ...+..+.-++.+-+|.. |+..+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347888999876655 455 455667888999999997 776652 2235677776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccceeecCCCCEEEEEecCC
Q 004149 293 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|+ ...+..+ ...+...+||||+++|+..|...
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 4444 3334332 23477899999999999988764
No 458
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.28 E-value=7 Score=41.70 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCCccccCCCEEEEEeeeC-----------------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004149 391 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~dg~~l~~~~~~~-----------------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+. +++..
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEEcc
Confidence 45788999996 77655421 013699999998888877654333344678887654 44444
No 459
>PRK13614 lipoprotein LpqB; Provisional
Probab=93.25 E-value=10 Score=42.55 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeec---CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.+...+.|+||.+++.+...+ | ..+|++.-+ ..|..+.++... .+. ......++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~----g----~~~V~va~V~R~~~G~P~~L~~~~----~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN----G----KSRVQVAGIVRNEDGTPRELTAPI----TLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC----C----ccEEEEEEEEeCCCCCeEEccCce----ecc-----------cCCCccee
Confidence 488999999999999988654 2 234655333 223323332211 000 00134578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004149 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 395 ~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.|..|+..++.....++....+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555554555666777777666555333
No 460
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.12 E-value=3.8 Score=43.68 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccee---eee--eeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004149 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+.|.|||+ |++..-...... .+. .........|++++. ++++.+.+...
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 456789999996 776432111000 000 000112357999997 67777777766
Q ss_pred CccccceeecCCCCEEEEEec
Q 004149 316 ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~ 336 (771)
.......+|+|+|+. ++..+
T Consensus 183 ~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred cCCCccceECCCCCE-EEEcc
Confidence 666778999999974 44444
No 461
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=93.00 E-value=2.8 Score=45.68 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=26.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCC
Q 004149 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~ 253 (771)
++..+..||+++++..... .......+.+.+|.|+..-
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 3478889999988765441 1344557788999999884
No 462
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=5.4 Score=43.53 Aligned_cols=237 Identities=11% Similarity=0.096 Sum_probs=122.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+-.+.+.|---+++-.-.. + -..+|+ .....+.+++..- ++....|=+--.+|+..+++-..+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G---~V~IWnyetqtmVksfeV~~~---------PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--G---DVQIWNYETQTMVKSFEVSEV---------PVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--C---eeEEEecccceeeeeeeeccc---------chhhheeeeccceEEEecCCceEE
Confidence 45566777777666543332 2 244552 2223333333211 113444545455555555443322
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCc
Q 004149 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.+......+.+.+..+..+...+..-|...-.++...+-.|-+||.+.+= .+.. ......+.+++|.|....-
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~nt- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNT- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCccc-
Confidence 12222222333344455555444444433334444556677778877652 2333 3445578899999955430
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004149 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
.+-. |.++ .|-++.+. .......|..+...+..+.+=+-|.+=+.++
T Consensus 156 --FaS~-------------sLDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 156 --FASA-------------SLDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred --eeee-------------eccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 3333 2334 34444441 2333456667777788888887776555555
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004149 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l 415 (771)
..+ ...|.+||.++..-.+..++.. .++...+|.|.=. |+.+.+.+|..+|
T Consensus 203 gaD---------D~tiKvWDyQtk~CV~TLeGHt-------------------~Nvs~v~fhp~lp-iiisgsEDGTvri 253 (794)
T KOG0276|consen 203 GAD---------DLTIKVWDYQTKSCVQTLEGHT-------------------NNVSFVFFHPELP-IIISGSEDGTVRI 253 (794)
T ss_pred cCC---------CceEEEeecchHHHHHHhhccc-------------------ccceEEEecCCCc-EEEEecCCccEEE
Confidence 433 3457888888766544333321 1344555665543 6677777777777
Q ss_pred EE
Q 004149 416 IS 417 (771)
Q Consensus 416 ~~ 417 (771)
|.
T Consensus 254 Wh 255 (794)
T KOG0276|consen 254 WN 255 (794)
T ss_pred ec
Confidence 73
No 463
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.86 E-value=1.1 Score=48.79 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEE-ecCCCCCccEEEEEeecCc
Q 004149 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~w-spDg~~~~~~l~~~~~~~~ 266 (771)
..+.+..|..+.....+....+....+..+.+|+...+. ...| -.....+.-++. .++.. ++.++
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg---- 136 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG---- 136 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec----
Confidence 444567788777777775555666678899999987663 1222 223335666666 55544 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce------e-----cC-CCCccccceeecCCCCEEEEE
Q 004149 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV------N-----LT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~------~-----lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
.-..+|+++|+ +++..+ + +. .....+.+.+-.+.|..|+
T Consensus 137 ----------GLD~~IflWDi-----------------n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv-- 187 (735)
T KOG0308|consen 137 ----------GLDRKIFLWDI-----------------NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV-- 187 (735)
T ss_pred ----------CCCccEEEEEc-----------------cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE--
Confidence 12237888888 444221 1 11 1222355556666664332
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004149 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 414 (771)
+. +....|.+||-.+.+......+. ..++..+..++||.+++ +++.++..+
T Consensus 188 sG---------gtek~lr~wDprt~~kimkLrGH-------------------TdNVr~ll~~dDGt~~l-s~sSDgtIr 238 (735)
T KOG0308|consen 188 SG---------GTEKDLRLWDPRTCKKIMKLRGH-------------------TDNVRVLLVNDDGTRLL-SASSDGTIR 238 (735)
T ss_pred ec---------CcccceEEeccccccceeeeecc-------------------ccceEEEEEcCCCCeEe-ecCCCceEE
Confidence 21 12346888888776542111111 11344555788998875 555677888
Q ss_pred EEEEEC
Q 004149 415 IISVNV 420 (771)
Q Consensus 415 l~~~d~ 420 (771)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 886543
No 464
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=92.82 E-value=0.74 Score=45.86 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=84.2
Q ss_pred cCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 216 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
.+-.||-+..+++ .+.+. ....+......+|+-|-....-++|..+ ..+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4456666665553 22221 1112234456688887653222233322 3347999998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 293 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++ ...+..+.+.+...++-|+--+|+.....+ ..|.+|++++..-..+..+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 5554 456777888899999999987777766554 3488888887665433322210
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+-++.|+.||.+| ++..-+....+|+++
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLN 211 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCee-eccCCcceEEEEecC
Confidence 11134477899999965 344444555677665
No 465
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.82 E-value=4.1 Score=42.46 Aligned_cols=161 Identities=11% Similarity=0.143 Sum_probs=95.3
Q ss_pred ccccCCcCc-ccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004149 202 GDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 202 ~~~~~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
..|...|.. +.++.....+.+||+++|++... ++ ....+....|.|-.-. ++..+. ..
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D 308 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YD 308 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------cc
Confidence 446666543 34556678999999999999888 44 4557889999998776 555541 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..+.+.|.-. ....+..-+. .+.+....|.|-....+|.+.++ ..|+-+|+...
T Consensus 309 ~~V~l~D~R~-------------~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~ 362 (463)
T KOG0270|consen 309 GTVALKDCRD-------------PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNP 362 (463)
T ss_pred ceEEeeeccC-------------ccccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCC
Confidence 3455555410 0012222221 23466778888777777777554 24777777554
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+. .+- .+. .+...+..+++++.-..++.+.+......||.++....+..
T Consensus 363 ~~-~vw-------t~~----------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 363 GK-PVW-------TLK----------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CC-cee-------EEE----------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 31 110 000 12223556666665566767766677778898877655433
No 466
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=3.3 Score=42.95 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHH
Q 004149 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~wl~~~ 769 (771)
..+.+.+.+..|.++|..+.+++.+..++.|+.++.+-+.++.|..........+++.+.+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 457788889999999999999999999999999999999999998766666678899999999865
No 467
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=92.67 E-value=11 Score=37.19 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=67.0
Q ss_pred cCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC-ceeEEEecccccch
Q 004149 216 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP-CALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 293 (771)
...++.+.|+++|..... ..+ ...+-.+.|||..++ +++++.-++.-|+ |+.-+. +-+..+|.
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irl---WDiRrasgcf~~lD~------ 230 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRL---WDIRRASGCFRVLDQ------ 230 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEE---EEeecccceeEEeec------
Confidence 347899999999987766 333 346778999999998 8887633221110 011111 12333443
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 294 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.++... +.-+.+.+.+.+.+|+.||.+++....++ ++.+|+...|...
T Consensus 231 ----------hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 231 ----------HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ----------ccCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 122221 11233455688999999999988766543 4677777666553
No 468
>PF03283 PAE: Pectinacetylesterase
Probab=92.64 E-value=0.38 Score=50.60 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.+++++|.+++.-++++|.|.|.|+||+.++..+.
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 567788999999986678899999999999999987654
No 469
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.63 E-value=0.28 Score=44.92 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhCC
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..+...++..... ....+|.++|||+||.+|..++....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444332 24578999999999999999887653
No 470
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.27 E-value=4.3 Score=40.22 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..--+||+++|++..+. +..+.......-.|..+ |+.++.++. ...++|+-
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 45568999999987762 33344455566667655 776663332 23333431
Q ss_pred hhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 298 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.- ....+..+...+.+..|.-|.+ ++-.+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 111 2233344556688899988866 4444433 3477888764
No 471
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.21 E-value=20 Score=39.17 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=59.6
Q ss_pred ceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+-+++++..++++++. -++-...+...+++|+.++ ++... .++.|.++|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34566666666655542 1344445677899999998 77764 2347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.. ..+.++...-.....+|.|||..++..+.+ .+|..+|.+-+
T Consensus 289 ---------~~-~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALs 331 (545)
T PF11768_consen 289 ---------TR-GVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALS 331 (545)
T ss_pred ---------CC-CeeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecC
Confidence 22 334444444557788999999977666544 24667776543
No 472
>PRK13615 lipoprotein LpqB; Provisional
Probab=92.18 E-value=11 Score=42.21 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=54.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004149 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+.+|.||..+++... ...+++.. .++..+.+... .....|+|.++| .+..+.+.. ..
T Consensus 338 s~avS~dg~~~A~v~~---------~~~l~vg~---~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~---~~ 395 (557)
T PRK13615 338 AATLSADGRQAAVRNA---------SGVWSVGD---GDRDAVLLDTR------PGLVAPSLDAQG-YVWSTPASD---PR 395 (557)
T ss_pred cceEcCCCceEEEEcC---------CceEEEec---CCCcceeeccC------CccccCcCcCCC-CEEEEeCCC---ce
Confidence 4556778888888732 12344322 22233333222 346789999999 665544322 22
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004149 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.+... ..|.... +..+... ++.+..+..|+||.++|.+.+.
T Consensus 396 ~l~~~~~~G~~~~-v~v~~~~------~~~I~~lrvSrDG~R~Avi~~~ 437 (557)
T PRK13615 396 GLVAWGPDGVGHP-VAVSWTA------TGRVVSLEVARDGARVLVQLET 437 (557)
T ss_pred EEEEecCCCceEE-eeccccC------CCeeEEEEeCCCccEEEEEEec
Confidence 33333 3344432 2333322 2234899999999999998764
No 473
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.11 E-value=6.4 Score=42.59 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=60.9
Q ss_pred CccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004149 214 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+.....++++++.+|+++.-.-+.. ...+....|+.+-. .+|+. ....++..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~--------------~ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSV--------------GADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEec--------------CCceeEEEEec-----
Confidence 4456789999999998766521121 22444555555444 33332 13335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004149 293 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
......+.-. ....+.+...||||+.|+..+ .+|.++|+++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444332 233578899999999887655 35899999887753
No 474
>PRK13614 lipoprotein LpqB; Provisional
Probab=91.94 E-value=8.4 Score=43.20 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004149 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
....++.|+||+.+|++.. ....++..+.++..+.+... ... ..++|+++| .+..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4667899999999999833 23466666655544444432 222 589999998 45443
No 475
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=91.91 E-value=13 Score=36.29 Aligned_cols=84 Identities=15% Similarity=0.061 Sum_probs=46.1
Q ss_pred CCCccccceeecCCCC-EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004149 314 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~-~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
.+.+.++...|||-|- -|.|.+.. ...+++.|+.+....++.-- ..+..|. .-...+.
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~~q~I~i----------~~d~~~~-~~tq~if 306 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVNHQVIVI----------PDDVERK-HNTQHIF 306 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCceeeEEec----------Ccccccc-ccccccc
Confidence 4677899999998664 35666643 35688999887665332111 1111111 0001234
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004149 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 393 ~~~~s~dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.-+|+.++..+++.+. .+++-+++.+
T Consensus 307 gt~f~~~n~s~~v~~e----~~~ae~ni~s 332 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE----LQGAEYNILS 332 (344)
T ss_pred cccccCCCcccccccc----hhhheeeccc
Confidence 5567777777765443 3455555544
No 476
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=91.66 E-value=0.9 Score=43.74 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=48.7
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|......+. ..+.|+.++++|.+. .. ......+++.. .++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~g~~~---~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLPGFGP---GE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCCCCCC---CC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 4555666664 468999999988421 10 01112333332 22333332 23467899999999999988
Q ss_pred HHHh---CCCceeEEEecCC
Q 004149 633 LIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 633 ~a~~---~p~~~~a~v~~~p 649 (771)
++.+ .+..+..+++..+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 8775 3445666665543
No 477
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=91.64 E-value=4.1 Score=41.90 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=52.6
Q ss_pred eEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004149 219 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
.+.++....+..+.+ ...-....+++||||++. |++ +. |..+|++...+
T Consensus 133 ~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Iit-aD--------------RDEkIRvs~yp---------- 181 (390)
T KOG3914|consen 133 SFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----IIT-AD--------------RDEKIRVSRYP---------- 181 (390)
T ss_pred eeeeecccccCcchh--hhhhhhhheeeecCCCCE----EEE-ec--------------CCceEEEEecC----------
Confidence 344444444666555 344456789999999985 554 43 44467766653
Q ss_pred hhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004149 299 LKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 299 ~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.-.... ...+...+..+..-++ ..|+-.+ +...|++||+.+|..
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKL 227 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCc
Confidence 2222211 1223344566665543 3333222 245799999988775
No 478
>PLN02606 palmitoyl-protein thioesterase
Probab=91.57 E-value=1.6 Score=44.01 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| ||+.||-+............+.+.+ .|.-+..+. .|. +. ...+.....+.+..+.+.|.+.+..
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh-
Confidence 456 6677997644434466666666642 366555554 231 11 0111111233344444444443222
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.+-+-++|+|.||.+.-.++.+.|+ .++-.|..++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3666665543
No 479
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=91.51 E-value=0.36 Score=51.59 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=59.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-----------------HHHHHHCCcEEEEECCCCCCCCChh
Q 004149 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-----------------LAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-----------------~~~la~~G~~V~~~d~rG~~~~g~~ 583 (771)
+..|.+.++ ....++|+|+++.|||++......... ..-+... -.++-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~--ndp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESP--NDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCC--CCCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 555666653 256689999999999987532111100 0011111 35677776655556554
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHH
Q 004149 584 ALQSLPGKVGSQDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
-......+ ....-+|+..+.+.+.+ ... ...+.+|+|-|+||+-+..+|.
T Consensus 164 ~~~e~~~d-~~~~~~D~~~~~~~f~~~fp~~~r-~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 164 LGDEKKKD-FEGAGKDVYSFLRLFFDKFPHYAR-LLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccc-hhccchhHHHHHHHHHHHHHHHhh-hcCceeEeeccccchhhHHHHH
Confidence 11111111 11123455544444333 221 2247899999999998888775
No 480
>PRK13615 lipoprotein LpqB; Provisional
Probab=91.42 E-value=11 Score=42.26 Aligned_cols=159 Identities=9% Similarity=-0.040 Sum_probs=86.6
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004149 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
..++.|+||+.+|++... ..+.+...+ ..+.+.. .... ..++|+++| .+..+.+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv~~g~------ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWSTPASD------ 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEEeCCC------
Confidence 678999999999998431 245555333 3333322 1222 589999999 554432111
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEE
Q 004149 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
...+.... .+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~~-~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAWG-PDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEec-CCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 11122211 223333331 0112335788899999999 99
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCEEE
Q 004149 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~l~ 332 (771)
++....+ ..+|++.-+-. .++..+.| ........+..|..|++ |+
T Consensus 433 vi~~~~g------------~~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGA------------GPQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCC------------CCEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 8863222 12455433310 12222333 33344778899999887 66
Q ss_pred EEecCCCCCCCCccccccceeeecCCC
Q 004149 333 FLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.+.... | ...+++++.+.+.
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g~ 504 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGGP 504 (557)
T ss_pred EEeccC----C---CCceEEEEECCCc
Confidence 665432 1 2355777777643
No 481
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=91.28 E-value=0.35 Score=52.94 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=47.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004149 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V~~~d~rG~~~~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|..+++.|++.||. -.+++|. .-+|+.... .+....-+..+...|+.+.+.. ..++|+|+||||||.++++
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 356789999999997 4566663 334443211 0111112345566666665442 2579999999999999998
Q ss_pred HHH
Q 004149 633 LIG 635 (771)
Q Consensus 633 ~a~ 635 (771)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 775
No 482
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=91.23 E-value=2.6 Score=41.61 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=72.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+|..+|+.+|+...-..... ...... -.++++. +++.. ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 678899998887654421211 123333 3446664 54442 3348999997
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004149 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+|+...-.........+. ..++..|++...+ ..|+.+|..+|+..-. ..
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~---------~~ 103 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS---------IY 103 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE---------EE
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee---------ec
Confidence 6666432222222222222 3445556665532 2699999888775211 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004149 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
.... .... .........++..+++... ...|+.+|+++|++.
T Consensus 104 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 104 LTSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp E-SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred cccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0000 0000 0112223334666766543 467999999999874
No 483
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.99 E-value=12 Score=42.51 Aligned_cols=86 Identities=20% Similarity=0.175 Sum_probs=49.2
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004149 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+.|+||.+++.+.... | ..+|++--+. ..+.+.++.-. .+.. . .....++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~----g----~~~v~va~V~R~~~G~~~l~~~~-~l~~---~----------l~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD----G----RRSLQIGRIVRDAKAVVSVEEFR-SLAP---E----------LEDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC----C----CcEEEEEEEEeCCCCcEEeeccE-Eecc---C----------CCccceeE
Confidence 688999999999999998653 1 2345544332 12212221111 1100 0 01245788
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004149 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 396 ~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
|..++..++......+...+|.+++++...
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 998887444344444566789999875544
No 484
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=18 Score=42.45 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=40.9
Q ss_pred CccccCCC-EEEEEeeeCC-eeEEEEEECCCC-cEEEecCCCCCc-eeeEEeecCCEEEEEEeCC-CCCCeEEEEEecc
Q 004149 394 NPWLSDGC-TMLLSSIWGS-SQVIISVNVSSG-ELLRITPAESNF-SWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVD 467 (771)
Q Consensus 394 ~~~s~dg~-~l~~~~~~~~-~~~l~~~d~~tg-~~~~l~~~~~~~-~~~~~s~d~~~l~~~~s~~-~~p~~l~~~~~~~ 467 (771)
+.++.|+. .+++.....+ ..++..+....+ ....++.+...+ ....++.+.+.++|.+... -+-..+|.+++..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~ 423 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGS 423 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccc
Confidence 45666764 3333333344 566777776666 556666554422 2334456778888877654 3334456555543
No 485
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=90.85 E-value=25 Score=37.36 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=86.6
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..+.+|++.+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 344444 334445668999999986 655531 1235777776
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004149 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....+..+...+....|+|+|+.++.....+ ..|..||...+..... .
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~ 237 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------T 237 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------e
Confidence 332 3344444566788899999998333331221 2344556553222110 0
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEE
Q 004149 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~ 449 (771)
+... . ... ...|++++..+ +....++...+|.+.........+......+....+.+++..++.
T Consensus 238 ~~~~--------~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 238 LSGH--------S-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred cCCC--------C-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 0000 0 000 11689999544 455556666666554322212333122223444567776776666
No 486
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=90.65 E-value=7.3 Score=39.12 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.6
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|+++|+.+++...-. ......+..+.+.|+..+ |+..+.. +..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec--------
Confidence 4589999999888754331 344557888899999988 7776632 235777776
Q ss_pred hhhhhcCCCCCCcceecCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004149 296 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+..+..+.. +...+.+..||+||.+|+-...+. +|.+|++...+
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~~~ 214 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNVKE 214 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecChhH
Confidence 5566655543 344688999999999888666553 46666666433
No 487
>PLN02454 triacylglycerol lipase
Probab=90.65 E-value=0.72 Score=48.72 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC--------CCceeEEEecCCcc
Q 004149 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~a~v~~~p~~ 651 (771)
.+++...++.+++...-..-+|.+.|||+||.+|+.+|... ...+.+++..+|-+
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 56777888888776432223599999999999999887531 11245666677754
No 488
>PLN02633 palmitoyl protein thioesterase family protein
Probab=90.52 E-value=2.4 Score=42.85 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004149 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| +|+.||-+............+.+.+ -|.-|.++.. |.+ . ...+.....+.+..+.+.|.+.+..
T Consensus 25 ~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-----~----~~s~~~~~~~Qve~vce~l~~~~~l- 92 (314)
T PLN02633 25 SVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-----V----GDSWLMPLTQQAEIACEKVKQMKEL- 92 (314)
T ss_pred CCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-----c----cccceeCHHHHHHHHHHHHhhchhh-
Confidence 456 5667996655444455555666644 2555655543 211 1 1112122233333444444443222
Q ss_pred CCeEEEEEcChhHHHHHHHHHhCCC--ceeEEEecCC
Q 004149 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~a~v~~~p 649 (771)
.+-+-++|+|.||.++-.++.+.|+ .++..|..++
T Consensus 93 ~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3677766554
No 489
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=90.43 E-value=6.8 Score=42.70 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004149 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+.+|.++.+.+++.+.+.-.-.+..+-.+.||-...+ .+++-...-..+.. ...+-.+++.
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~------~~~d~ciYE~-------- 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGE------PSADSCIYEC-------- 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCC------ceeEEEEEEe--------
Confidence 45688888888887777621222334556778864444 44443211111000 0012222222
Q ss_pred hhhhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004149 296 ELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
...+.+++. .-...+...++||+.++|+..-.+. .|.++|...+..+.. ..
T Consensus 244 ---------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~~~-ka---- 298 (545)
T PF11768_consen 244 ---------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTLLA-KA---- 298 (545)
T ss_pred ---------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeeeee-ee----
Confidence 112222221 1234577889999999998877663 488888765433211 00
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004149 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.| .+..++|+|||. +++..+..|...+|-+-+.
T Consensus 299 ----------~~------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 299 ----------EF------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ----------cc------cceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 11 135678999997 5555565666666644443
No 490
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=90.16 E-value=0.53 Score=46.44 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHHhC-----CCceeEEEecCCcc
Q 004149 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 651 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~a~v~~~p~~ 651 (771)
+++...+..+.++. ...+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34445555444442 356899999999999999877642 33466666666654
No 491
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.83 E-value=0.8 Score=45.80 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=86.1
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004149 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
-.+.|..+..+.+||+++|++.... +..-..+-.+.|+- .. ++..+. ++...+|.++.
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--g~----mvtcSk-------------DrsiaVWdm~s-- 306 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--GY----MVTCSK-------------DRSIAVWDMAS-- 306 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC--CE----EEEecC-------------CceeEEEeccC--
Confidence 4456778899999999999876552 23333455667762 22 454441 23234555543
Q ss_pred ccchhhhhhhhcCCCCCC-cc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004149 290 YKSEASELELKESSSEDL-PV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+. .+ +.|..+...+..+.|+ .|+|+..+.+. .|.+|+..+.+..+...+
T Consensus 307 ---------------ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-----------TikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 307 ---------------PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-----------TIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ---------------chHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-----------eEEEEeccceeeehhhhc
Confidence 111 12 3455566667777774 57888777554 488899888776443322
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004149 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
. -.|+ .+.--.|+ ++++.+.+...+|| |+..|..-++..+..
T Consensus 359 H--------------kRGI-------AClQYr~r-lvVSGSSDntIRlw--di~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 H--------------KRGI-------ACLQYRDR-LVVSGSSDNTIRLW--DIECGACLRVLEGHE 400 (499)
T ss_pred c--------------cccc-------eehhccCe-EEEecCCCceEEEE--eccccHHHHHHhchH
Confidence 2 1111 12222454 77777767776776 566777666655443
No 492
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=89.81 E-value=5.8 Score=40.53 Aligned_cols=161 Identities=11% Similarity=0.165 Sum_probs=86.4
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004149 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
++..+.+.+....+..++|...++ .+|.+- +..++...|+ ++.+
T Consensus 95 KPI~~~~~~H~SNIF~L~F~~~N~-----~~~SG~--------------~~~~VI~HDi-----------------Et~q 138 (609)
T KOG4227|consen 95 KPIGVMEHPHRSNIFSLEFDLENR-----FLYSGE--------------RWGTVIKHDI-----------------ETKQ 138 (609)
T ss_pred CCceeccCccccceEEEEEccCCe-----eEecCC--------------CcceeEeeec-----------------ccce
Confidence 344443344445666777765444 556551 3346777777 5555
Q ss_pred ceecCCCC---ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004149 309 VVNLTESI---SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 309 ~~~lt~~~---~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
...+..+. +.+.....+|-.+.++..+... .+.+||...... .+ ..+. +.
T Consensus 139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~-----------~V~~~D~Rd~~~-~~-------~~~~--------~A 191 (609)
T KOG4227|consen 139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK-----------LVSFIDNRDRQN-PI-------SLVL--------PA 191 (609)
T ss_pred eeeeecccCcccceeecccCCCCceEEEEecCc-----------eEEEEeccCCCC-CC-------ceee--------ec
Confidence 54444333 2566667777777666655442 245566433221 00 0000 11
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE------ecCCCCCceeeEEeecCCEEEEEEe
Q 004149 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR------ITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 386 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~l~~~d~~tg~~~~------l~~~~~~~~~~~~s~d~~~l~~~~s 452 (771)
.|.....+..|.|---.|+++.+..+...||-+......+.+ |...........|++.|.+++.++.
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 122234566788887788888877777778866543322221 1111111233578999998887764
No 493
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=89.67 E-value=1.3 Score=44.23 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHHHHHH--HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH-HHHHHHHHc
Q 004149 535 SCDPLIVVLHGGPHSVSLS-SYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL-TAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~~~la--~~G~~V~~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~-~~i~~l~~~ 610 (771)
...| ||+.||-+...... ........+. --|.-|.+++.-. + ...+..+...+ .+.+.. .+.+.+.+.
T Consensus 4 ~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f~-----~v~~Qv~~vc~~l~~~ 75 (279)
T PF02089_consen 4 SPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFFG-----NVNDQVEQVCEQLAND 75 (279)
T ss_dssp SS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHHS-----HHHHHHHHHHHHHHH-
T ss_pred CCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHHH-----HHHHHHHHHHHHHhhC
Confidence 3445 67789966443222 3333333322 2477777776421 1 00011111111 122322 233334333
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHHhCCC-ceeEEEecCC
Q 004149 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~a~v~~~p 649 (771)
+... +-+-++|+|.||.+.-.++.+.++ .++-.|..++
T Consensus 76 p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 76 PELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 3232 468999999999999999988764 4677776554
No 494
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=89.66 E-value=0.7 Score=46.87 Aligned_cols=147 Identities=18% Similarity=0.155 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHHhCCCceeEEEec-CCccchh----hhhcCCCCCcchh-hh
Q 004149 597 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLA----LMVGTTDIPDWCY-VE 669 (771)
Q Consensus 597 ~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~a~v~~-~p~~~~~----~~~~~~~~~~~~~-~~ 669 (771)
+..+..|++-.... ..+.-++..|.|.|--|+.+...|...|+ +.++|.. .-..+.. .++.. ....|-. ..
T Consensus 214 v~a~srAMdlAq~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDpr-v~aIvp~v~D~Lni~a~L~hiyrs-YGgnwpi~l~ 291 (507)
T COG4287 214 VYAVSRAMDLAQDELEQVEIKGFMVTGASKRGWTTWLTAIADPR-VFAIVPFVYDNLNIEAQLLHIYRS-YGGNWPIKLA 291 (507)
T ss_pred HHHHHHHHHHHHhhhhheeeeeEEEeccccchHHHHHHHhcCcc-hhhhhhhHHhhcccHHHHHHHHHh-hCCCCCcccc
Confidence 34455555544332 22566789999999999999888877664 3333321 1111111 00000 0001100 00
Q ss_pred hccCCCCCcCCCCCChhhHHHHhhcCccccc-----cCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004149 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHI-----SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~-----~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.|-..+...... .+.....+.-.+|+.+. .++..|-+|+.+..|...+++.+..++..|... .-+.+.|+
T Consensus 292 pyyaegi~erl~--tp~fkqL~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG~---kaLrmvPN 366 (507)
T COG4287 292 PYYAEGIDERLE--TPLFKQLLEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPGE---KALRMVPN 366 (507)
T ss_pred hhHhhhHHHhhc--CHHHHHHHHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCCc---eeeeeCCC
Confidence 000000000111 11122223334566554 677899999999999999999999999998753 56789999
Q ss_pred CCccCC
Q 004149 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
..|...
T Consensus 367 ~~H~~~ 372 (507)
T COG4287 367 DPHNLI 372 (507)
T ss_pred Ccchhh
Confidence 999765
No 495
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.22 E-value=1.5 Score=35.44 Aligned_cols=72 Identities=8% Similarity=-0.053 Sum_probs=0.0
Q ss_pred CccccCCCEEEEEe---------------eeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004149 394 NPWLSDGCTMLLSS---------------IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 394 ~~~s~dg~~l~~~~---------------~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d~~~l~~~~s~~~~p~ 458 (771)
+...+|+..|||+. ......+|+++|+.|++.+.|..+-......++++|+..++++. +...
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E---t~~~ 79 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE---TGRY 79 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE---GGGT
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe---ccCc
Q ss_pred eEEEEEeccc
Q 004149 459 QVKYGYFVDK 468 (771)
Q Consensus 459 ~l~~~~~~~~ 468 (771)
+|.++.+...
T Consensus 80 Ri~rywl~Gp 89 (89)
T PF03088_consen 80 RILRYWLKGP 89 (89)
T ss_dssp EEEEEESSST
T ss_pred eEEEEEEeCC
No 496
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=89.07 E-value=15 Score=40.86 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=73.5
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeecc-CCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004149 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
...+.|+-.+.+-.+..|.++|+++|+.++.- +..+ +...-.+..-|.|-+ |+.. |.++
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atS-------------csdk-- 663 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATS-------------CSDK-- 663 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEe-------------ecCC--
Confidence 34555665555666678999999999887772 1111 122334556666654 4443 4443
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004149 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.|..+|. -+|++ .+++.+...+....|++|-|.|+-.+.+. -||+|-+..
T Consensus 664 tl~~~Df-----------------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-----------CIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDF-----------------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-----------CIFVWKLPL 714 (1080)
T ss_pred ceEEEEe-----------------ccchhhhhhcCcchheeeeeecccchhheeecCCc-----------eEEEEECch
Confidence 7888888 67775 56777777899999999999999888653 377776644
No 497
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=89.03 E-value=10 Score=39.34 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=80.3
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC----ccceEEEecCCCCCccEEEEEeecCc--ce-eeeee
Q 004149 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL----SVGQVVWAPLNEGLHQYLVFVGWSSE--TR-KLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~----~~~~~~wspDg~~~~~~l~~~~~~~~--~~-~~g~~ 273 (771)
-..|....|+.++....--|+.++.+++..+.+. .+.+. -..++...++|. |+|+..... .+ -.-..
T Consensus 119 Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~-~~~~G~~~kf~N~ldI~~~g~-----vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 119 GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLA-DEAEGKPFKFLNDLDIDPEGV-----VYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred eEEeccCCCeEEEEecceeeEEECCCCCcceecc-ccccCeeeeecCceeEcCCCe-----EEEeccccccchhheEEee
Confidence 3456666667777777888888898998877773 11111 234667777554 677543221 11 11112
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004149 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
.+.....+++.+|. .+...+.|.+.-......+.|||++.++|..... .+|.+
T Consensus 193 l~g~~~GRl~~YD~-----------------~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~----------~ri~r 245 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDP-----------------STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT----------ARIKR 245 (376)
T ss_pred ecCCCccceEEecC-----------------cccchhhhhhcccccccccCCCCCCEEEEEeecc----------ceeee
Confidence 23345568889986 6677777777777788899999999999887543 45666
Q ss_pred eecCCC
Q 004149 354 IDWPTN 359 (771)
Q Consensus 354 ~d~~~~ 359 (771)
+-+++.
T Consensus 246 ywi~g~ 251 (376)
T KOG1520|consen 246 YWIKGP 251 (376)
T ss_pred eEecCC
Confidence 665543
No 498
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=88.98 E-value=4.4 Score=42.52 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=52.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004149 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.++.|.+|.+......... -.|+ .+..++=+|+|.. |+-.+ -...||++.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~----l~ag~---------------i~g~lYlWel------- 110 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPG--PVHALASSNLGYF----LLAGT---------------ISGNLYLWEL------- 110 (476)
T ss_pred cCccccccccCchhhhhhhccccc--ceeeeecCCCceE----EEeec---------------ccCcEEEEEe-------
Confidence 4567777776543321110 0222 2445667888875 54432 1227888888
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCC
Q 004149 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|.. ..+..+-..+...+||-||+.|+..+++.
T Consensus 111 ----------ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 111 ----------SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ----------ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 66664 55556666788999999999887766663
No 499
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=88.79 E-value=1.9 Score=41.81 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=62.0
Q ss_pred ccccCCcCcccCCccCceEEEEEcc--CCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004149 202 GDWEEDWGETYAGKRQPSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
..|...-..+..+.....|..+.++ ++..+.- +-.-.+-++..+..-||+|- ++..+|++.
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI----lATAGWD~R------------ 274 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI----LATAGWDHR------------ 274 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE----EeecccCCc------------
Confidence 3344333344444444555555543 3432111 00122335678899999997 777777543
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004149 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+||.+. ....+-.|+-+...+...+||||..-+|-.+.+.
T Consensus 275 -iRVyswr------------------tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 275 -IRVYSWR------------------TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred -EEEEEec------------------cCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 2567665 3445666777788899999999988777666553
No 500
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.71 E-value=34 Score=35.79 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=77.5
Q ss_pred eEEEeCCCCCeEEEEecCC---CCCCeEEEEecCCcceEEEecCCcc----c--ccccCCCcccceeecCCCCeEEEEec
Q 004149 102 SAVVPSPSGSKLLVVRNPE---NESPIQFELWSQSQLEKEFHVPQTV----H--GSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
...++.++|... +..+.. .....|+.+...|...+.+.++... . ...-.+..|.+++++|||+.|+.+.+
T Consensus 88 Egi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEE-EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 345666777544 333322 1126788888556665544443322 1 23345567889999999998887766
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc------eeeccCCC---CCCccc
Q 004149 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE------VQAVKGIP---KSLSVG 243 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~------~~~l~~~~---~~~~~~ 243 (771)
....... . ...........|+.+|..+.. ..++...+ ....+.
T Consensus 167 ~~l~~d~----------~------------------~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 167 SPLKQDG----------P------------------RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGIS 218 (326)
T ss_pred ccccCCC----------c------------------ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCce
Confidence 5421100 0 000001123567777776522 11221000 456788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004149 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
.+.+-+|++- |+.-..... + .....+||.+++.
T Consensus 219 d~~al~d~~l----LvLER~~~~----~----~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRL----LVLERDFSP----G----TGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcE----EEEEccCCC----C----ccceEEEEEEEcc
Confidence 9999999985 554321111 0 1233489999973
Done!