BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004150
(771 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V53|A Chain A, Crystal Structure Of Human Rbm25
pdb|3V53|B Chain B, Crystal Structure Of Human Rbm25
pdb|3V53|C Chain C, Crystal Structure Of Human Rbm25
pdb|3V53|D Chain D, Crystal Structure Of Human Rbm25
pdb|3V53|E Chain E, Crystal Structure Of Human Rbm25
Length = 119
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 663 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 722
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 15 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 74
Query: 723 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 766
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 75 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 118
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186
Query: 116 LNKFNIDGQEL 126
+N F++ GQ L
Sbjct: 187 MNLFDLGGQYL 197
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114
++VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88
Query: 115 LLNKFNIDGQEL 126
+N + G+ +
Sbjct: 89 QMNSVMLGGRNI 100
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 117 NKFNIDGQELMLKVDQATRE 136
N G+ L+VD A E
Sbjct: 71 NGREFSGR--ALRVDNAASE 88
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 111 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 170
Query: 116 LNKFNIDGQEL 126
N F++ GQ L
Sbjct: 171 XNLFDLGGQYL 181
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
+VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 14 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFAFVEYEVPEAAQLALEQ 73
Query: 116 LNKFNIDGQEL 126
N + G+ +
Sbjct: 74 XNSVXLGGRNI 84
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 112 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 171
Query: 116 LNKFNIDGQEL 126
+N F++ GQ L
Sbjct: 172 MNLFDLGGQYL 182
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%)
Query: 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114
+VYVG I D + G +KS + KGF F E+E E AL
Sbjct: 14 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 73
Query: 115 LLNKFNIDGQEL 126
+N + G+ +
Sbjct: 74 QMNSVMLGGRNI 85
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA---QYPSNGTPKGFGFCEFESAEGVLR 111
TKV++G++ D ++ + G +K +P KG+ + EFE+ + +
Sbjct: 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPH--LSKGYAYVEFENPDEAEK 62
Query: 112 ALRLLNKFNIDGQEL 126
AL+ ++ IDGQE+
Sbjct: 63 ALKHMDGGQIDGQEI 77
>pdb|1MP1|A Chain A, Solution Structure Of The Pwi Motif From Srm160
Length = 111
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 693 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDE-AEMFVLKM 750
E ++PWI+K++TE LG E+ ++++I + + S+M+++ L L+ + A F+ ++
Sbjct: 23 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGEL 82
Query: 751 WRMLI 755
W +L+
Sbjct: 83 WPLLL 87
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
++YVG + D + + + G ++S + G KG+GF F +E +AL
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87
Query: 116 LNKFNIDGQEL 126
LN F + G+ +
Sbjct: 88 LNGFELAGRPM 98
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 92 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132
NG KG G +FES E RA R++N + G+E+ +++D+
Sbjct: 44 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 92 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132
NG KG G +FES E RA R++N + G+E+ +++D+
Sbjct: 41 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 81
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 112
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 2 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 61
Query: 113 LRLLNKFNIDGQEL 126
+R LN + + + L
Sbjct: 62 VRNLNGYQLGSRFL 75
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 112
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 3 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 62
Query: 113 LRLLNKFNIDGQEL 126
+R LN + + + L
Sbjct: 63 VRNLNGYQLGSRFL 76
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 32/74 (43%)
Query: 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 112
P VY+G I + +L + G V + K P G KG+ F EF E A
Sbjct: 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 60
Query: 113 LRLLNKFNIDGQEL 126
+R LN + + + L
Sbjct: 61 VRNLNGYQLGSRFL 74
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116
+YVG + D + + + G + + + G KG+GF F +E RAL L
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 117 NKFNIDGQEL 126
N F + G+ +
Sbjct: 68 NGFELAGRPM 77
>pdb|3VAF|A Chain A, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAF|B Chain B, Structure Of U2af65 Variant With Bru3 Dna
pdb|3VAG|A Chain A, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAG|B Chain B, Structure Of U2af65 Variant With Bru3c2 Dna
pdb|3VAH|A Chain A, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAH|B Chain B, Structure Of U2af65 Variant With Bru3c4 Dna
pdb|3VAI|A Chain A, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAI|B Chain B, Structure Of U2af65 Variant With Bru3c5 Dna
pdb|3VAJ|A Chain A, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAJ|B Chain B, Structure Of U2af65 Variant With Bru5c6 Dna
pdb|3VAK|A Chain A, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAK|B Chain B, Structure Of U2af65 Variant With Bru5 Dna
pdb|3VAL|A Chain A, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|B Chain B, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|D Chain D, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAL|I Chain I, Structure Of U2af65 Variant With Bru5c1 Dna
pdb|3VAM|A Chain A, Structure Of U2af65 Variant With Bru5c2 Dna
pdb|3VAM|B Chain B, Structure Of U2af65 Variant With Bru5c2 Dna
Length = 174
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 98 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 157
Query: 116 LNKFNIDGQELMLK 129
LN + ++L+++
Sbjct: 158 LNGMQLGDKKLLVQ 171
>pdb|2G4B|A Chain A, Structure Of U2af65 Variant With Polyuridine Tract
Length = 172
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 96 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155
Query: 116 LNKFNIDGQELMLK 129
LN + ++L+++
Sbjct: 156 LNGMQLGDKKLLVQ 169
>pdb|2U2F|A Chain A, Solution Structure Of The Second Rna-Binding Domain Of
Hu2af65
Length = 85
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 116 LNKFNIDGQELMLK 129
LN + ++L+++
Sbjct: 63 LNGMQLGDKKLLVQ 76
>pdb|2YH0|A Chain A, Solution Structure Of The Closed Conformation Of Human
U2af65 Tandem Rrm1 And Rrm2 Domains
pdb|2YH1|A Chain A, Model Of Human U2af65 Tandem Rrm1 And Rrm2 Domains With
Eight-Site Uridine Binding
Length = 198
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
K+++G + + D V +L G +K++ + + G KG+ FCE+ +A+
Sbjct: 116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175
Query: 116 LNKFNIDGQELMLK 129
LN + ++L+++
Sbjct: 176 LNGMQLGDKKLLVQ 189
>pdb|1X4Q|A Chain A, Solution Structure Of Pwi Domain In U4U6 SMALL NUCLEAR
Ribonucleoprotein Prp3(Hprp3)
Length = 92
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 688 KHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFV 747
K EL E ++PWI K + LG E T+V ++ + + + L+ LDD FV
Sbjct: 12 KRELDE-LKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFV 70
Query: 748 LKMW 751
K++
Sbjct: 71 DKLF 74
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFCQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFCEHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 75 LKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133
+V G +K +G P+G+ F E+E + A + + IDG+ +++ V++
Sbjct: 123 FEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
K++VG I P GT+ + G +GFGF ++SA+ V R +
Sbjct: 89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ- 147
Query: 116 LNKFNIDGQELMLKVDQA 133
NKF ID ++ +++ +A
Sbjct: 148 -NKF-IDFKDRKIEIKRA 163
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE---SAEG 108
K K+++G + D + GTV K + P+ G +GFGF FE S +
Sbjct: 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 60
Query: 109 VLRALRLLNKFNID 122
V++ +L+ ID
Sbjct: 61 VVKTQHILDGKVID 74
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 54 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 111
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 112 SHEHLEGALDR 122
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 96 SLSDPPNIAGLSHFLQHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 153
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 154 SHEHLEGALDR 164
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 75 LKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133
+V G +K +G P+G+ F E+E + A + + IDG+ +++ V++
Sbjct: 123 FEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 97 GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132
GFGF E++ E +AL+ L +DG +L +++ +
Sbjct: 51 GFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 SGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD- 631
S ++PPN+A + F + + + +K K E E S+ L + + S E N D
Sbjct: 67 SLSDPPNIAGLSHFLEHMLFLGTK--KYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDV 124
Query: 632 --EHKEKILDR 640
EH E LDR
Sbjct: 125 SHEHLEGALDR 135
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115
+YVG + A ++ + + CG+V +G PKGF + EF E V +L L
Sbjct: 8 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 66
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 96 KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATR 135
+GFGF FE+ + A+ +N ++DG++ ++VDQA +
Sbjct: 54 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQ--IRVDQAGK 91
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 92 NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130
NG KG+ F EF S E AL NK I+G+ + L++
Sbjct: 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 110
E +YVG + A ++ + + CG+V +G PKGF + EF E V
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 62
Query: 111 RALRL 115
+L L
Sbjct: 63 TSLAL 67
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 93 GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
G PK FGF F+ E V A+ LLN + G+ +
Sbjct: 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 104
+YVG + +A S+ V + G V + K PKGFGF E +
Sbjct: 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQ 51
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAE 107
E+ T +Y+ + + D + ++LK G V S R S+GT +G GF ES E
Sbjct: 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVIS-TRILRDSSGTSRGVGFARMESTE 77
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 93 GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128
G+ KGFGF +F S E A + IDG ++ L
Sbjct: 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,805,859
Number of Sequences: 62578
Number of extensions: 647233
Number of successful extensions: 1267
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 81
length of query: 771
length of database: 14,973,337
effective HSP length: 106
effective length of query: 665
effective length of database: 8,340,069
effective search space: 5546145885
effective search space used: 5546145885
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)