Query 004150
Match_columns 771
No_of_seqs 432 out of 1683
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 4.3E-69 9.3E-74 600.4 32.4 613 51-766 37-668 (668)
2 PF01480 PWI: PWI domain; Int 99.8 6.9E-19 1.5E-23 153.1 5.4 68 693-760 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.6E-17 3.4E-22 143.5 8.1 70 690-759 4-73 (74)
4 KOG2146 Splicing coactivator S 99.7 1.6E-17 3.4E-22 171.1 3.3 81 686-766 35-119 (354)
5 KOG4661 Hsp27-ERE-TATA-binding 99.5 1.9E-12 4E-17 143.5 24.4 82 51-132 402-483 (940)
6 PLN03134 glycine-rich RNA-bind 99.5 3.5E-13 7.6E-18 130.9 13.4 83 51-133 31-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4.3E-13 9.3E-18 147.0 14.4 82 52-133 267-348 (352)
8 KOG0121 Nuclear cap-binding pr 99.4 3.2E-13 7E-18 125.6 7.3 82 52-133 34-115 (153)
9 KOG0122 Translation initiation 99.4 5.9E-12 1.3E-16 128.6 13.1 85 49-133 184-268 (270)
10 TIGR01659 sex-lethal sex-letha 99.3 1.1E-11 2.4E-16 136.6 15.6 83 51-133 104-186 (346)
11 PF00076 RRM_1: RNA recognitio 99.3 4.8E-12 1E-16 105.5 9.6 70 57-127 1-70 (70)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 4.5E-12 9.8E-17 138.9 11.5 81 53-133 2-82 (352)
13 KOG0113 U1 small nuclear ribon 99.3 2.3E-11 4.9E-16 127.2 10.8 84 50-133 97-180 (335)
14 KOG0125 Ataxin 2-binding prote 99.2 4.7E-11 1E-15 126.2 12.3 82 51-134 93-174 (376)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.2E-10 2.6E-15 134.1 14.8 82 52-133 293-374 (509)
16 TIGR01645 half-pint poly-U bin 99.2 6.9E-11 1.5E-15 137.6 12.5 82 52-133 202-283 (612)
17 KOG0145 RNA-binding protein EL 99.2 8.6E-11 1.9E-15 120.7 11.6 81 52-132 276-356 (360)
18 KOG0149 Predicted RNA-binding 99.2 3.6E-11 7.7E-16 122.6 7.4 81 51-132 9-89 (247)
19 TIGR01645 half-pint poly-U bin 99.2 6.2E-11 1.3E-15 137.9 10.3 79 52-130 105-183 (612)
20 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.7E-15 98.0 9.3 70 57-127 1-70 (70)
21 PLN03120 nucleic acid binding 99.2 1.1E-10 2.4E-15 122.3 10.6 76 54-133 4-79 (260)
22 PLN03213 repressor of silencin 99.2 1.5E-10 3.2E-15 127.3 11.7 89 52-146 8-98 (759)
23 KOG0146 RNA-binding protein ET 99.2 2E-11 4.3E-16 125.7 4.7 87 46-132 277-363 (371)
24 KOG0126 Predicted RNA-binding 99.2 5.6E-12 1.2E-16 123.7 0.3 82 51-132 32-113 (219)
25 TIGR01622 SF-CC1 splicing fact 99.1 2.4E-10 5.2E-15 130.0 11.8 80 53-132 185-264 (457)
26 KOG0117 Heterogeneous nuclear 99.1 2.3E-10 5.1E-15 125.0 10.8 87 48-134 77-164 (506)
27 TIGR01659 sex-lethal sex-letha 99.1 2.3E-10 4.9E-15 126.3 10.9 81 53-133 192-274 (346)
28 smart00362 RRM_2 RNA recogniti 99.1 4.5E-10 9.7E-15 92.2 10.0 71 56-128 1-71 (72)
29 KOG0145 RNA-binding protein EL 99.1 3.4E-10 7.3E-15 116.4 11.1 89 50-138 37-125 (360)
30 KOG0108 mRNA cleavage and poly 99.1 1.3E-10 2.8E-15 130.5 8.4 82 55-136 19-100 (435)
31 TIGR01648 hnRNP-R-Q heterogene 99.1 4.8E-10 1E-14 130.3 11.1 81 51-132 55-136 (578)
32 TIGR01628 PABP-1234 polyadenyl 99.1 7.3E-10 1.6E-14 129.6 12.7 84 52-136 283-366 (562)
33 COG0724 RNA-binding proteins ( 99.1 6.7E-10 1.4E-14 113.4 10.4 80 54-133 115-194 (306)
34 KOG4207 Predicted splicing fac 99.1 2.9E-10 6.3E-15 113.7 7.4 82 52-133 11-92 (256)
35 TIGR01628 PABP-1234 polyadenyl 99.0 6.3E-10 1.4E-14 130.2 11.2 78 56-133 2-79 (562)
36 PLN03121 nucleic acid binding 99.0 7.9E-10 1.7E-14 114.4 10.5 76 53-132 4-79 (243)
37 smart00360 RRM RNA recognition 99.0 1.1E-09 2.4E-14 89.4 9.1 70 59-128 1-70 (71)
38 KOG0107 Alternative splicing f 99.0 4.7E-10 1E-14 109.9 8.0 76 53-133 9-84 (195)
39 TIGR01622 SF-CC1 splicing fact 99.0 9.9E-10 2.1E-14 125.0 12.0 82 51-133 86-167 (457)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.4E-09 5.2E-14 123.3 15.1 78 51-133 272-350 (481)
41 KOG0148 Apoptosis-promoting RN 99.0 4.4E-10 9.6E-15 116.3 7.9 85 51-135 59-143 (321)
42 KOG0131 Splicing factor 3b, su 99.0 3.9E-10 8.5E-15 111.0 6.1 81 52-132 7-87 (203)
43 KOG0148 Apoptosis-promoting RN 99.0 1.6E-09 3.5E-14 112.2 9.3 78 50-133 160-237 (321)
44 KOG0124 Polypyrimidine tract-b 99.0 4.1E-10 9E-15 120.0 4.4 77 54-130 113-189 (544)
45 cd00590 RRM RRM (RNA recogniti 99.0 6.1E-09 1.3E-13 85.8 10.4 74 56-130 1-74 (74)
46 KOG0111 Cyclophilin-type pepti 98.9 4.3E-10 9.4E-15 113.2 3.7 83 52-134 8-90 (298)
47 KOG0130 RNA-binding protein RB 98.9 1.6E-09 3.4E-14 102.0 6.9 83 51-133 69-151 (170)
48 KOG0144 RNA-binding protein CU 98.9 3.9E-09 8.4E-14 115.2 10.3 88 51-138 31-121 (510)
49 TIGR01642 U2AF_lg U2 snRNP aux 98.9 7.1E-09 1.5E-13 119.6 12.5 73 50-129 171-255 (509)
50 KOG0114 Predicted RNA-binding 98.9 2.3E-08 4.9E-13 90.5 12.2 82 53-137 17-98 (124)
51 KOG0127 Nucleolar protein fibr 98.9 4.9E-09 1.1E-13 117.1 9.0 86 53-139 116-201 (678)
52 KOG0415 Predicted peptidyl pro 98.9 3.3E-09 7.1E-14 113.1 7.2 86 51-136 236-321 (479)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2.3E-08 4.9E-13 115.3 10.6 75 53-133 1-77 (481)
54 KOG0147 Transcriptional coacti 98.8 7.8E-09 1.7E-13 116.0 6.3 78 55-132 279-356 (549)
55 KOG0109 RNA-binding protein LA 98.8 9.1E-09 2E-13 107.7 6.3 71 55-133 3-73 (346)
56 KOG0124 Polypyrimidine tract-b 98.8 1.1E-08 2.4E-13 109.3 6.8 95 38-132 187-288 (544)
57 TIGR01648 hnRNP-R-Q heterogene 98.7 3E-08 6.5E-13 115.5 10.7 73 53-133 232-306 (578)
58 KOG0105 Alternative splicing f 98.7 1.6E-08 3.4E-13 99.9 6.9 80 51-133 3-82 (241)
59 smart00361 RRM_1 RNA recogniti 98.7 6.4E-08 1.4E-12 82.4 8.8 61 68-128 2-69 (70)
60 KOG0127 Nucleolar protein fibr 98.7 4.3E-08 9.2E-13 109.7 9.7 84 52-135 290-379 (678)
61 PF13893 RRM_5: RNA recognitio 98.7 1.2E-07 2.5E-12 76.9 8.6 56 71-131 1-56 (56)
62 KOG0144 RNA-binding protein CU 98.6 3.9E-08 8.4E-13 107.6 6.2 81 51-131 421-501 (510)
63 KOG0117 Heterogeneous nuclear 98.6 9.7E-08 2.1E-12 104.9 7.9 75 52-134 257-331 (506)
64 KOG4208 Nucleolar RNA-binding 98.6 1.5E-07 3.3E-12 94.8 8.3 84 51-134 46-130 (214)
65 KOG0131 Splicing factor 3b, su 98.5 1.6E-07 3.5E-12 92.9 6.7 83 51-133 93-176 (203)
66 KOG0109 RNA-binding protein LA 98.5 1.1E-07 2.4E-12 99.6 5.2 75 51-133 75-149 (346)
67 KOG4212 RNA-binding protein hn 98.5 4.4E-07 9.6E-12 99.3 9.1 79 53-132 43-122 (608)
68 KOG0123 Polyadenylate-binding 98.5 4.4E-07 9.5E-12 101.1 9.2 79 52-133 74-152 (369)
69 KOG1548 Transcription elongati 98.4 6.5E-07 1.4E-11 96.0 9.0 83 50-133 130-220 (382)
70 KOG1457 RNA binding protein (c 98.4 2.1E-06 4.5E-11 87.4 11.7 84 51-134 31-118 (284)
71 KOG4206 Spliceosomal protein s 98.4 7.5E-07 1.6E-11 91.1 7.9 84 54-140 9-96 (221)
72 KOG0110 RNA-binding protein (R 98.3 6.2E-07 1.4E-11 103.5 6.6 90 52-142 611-700 (725)
73 KOG0146 RNA-binding protein ET 98.3 9E-07 2E-11 91.9 6.4 83 53-136 18-103 (371)
74 KOG0132 RNA polymerase II C-te 98.3 1.4E-06 3E-11 101.3 7.9 74 54-133 421-494 (894)
75 KOG0226 RNA-binding proteins [ 98.3 1E-06 2.3E-11 91.1 6.1 91 52-142 188-278 (290)
76 KOG0153 Predicted RNA-binding 98.3 2.2E-06 4.8E-11 92.0 8.3 79 49-133 223-302 (377)
77 KOG0110 RNA-binding protein (R 98.2 2.4E-06 5.1E-11 98.8 8.4 78 54-132 515-596 (725)
78 KOG0151 Predicted splicing reg 98.2 3.5E-06 7.6E-11 97.1 9.1 83 51-133 171-256 (877)
79 KOG4205 RNA-binding protein mu 98.2 1.1E-06 2.4E-11 95.4 4.4 80 53-133 5-84 (311)
80 KOG0123 Polyadenylate-binding 98.2 3.4E-06 7.4E-11 94.1 7.9 77 55-137 2-78 (369)
81 KOG2416 Acinus (induces apopto 98.2 6.8E-06 1.5E-10 93.3 9.9 78 50-133 440-521 (718)
82 KOG0116 RasGAP SH3 binding pro 98.2 9.7E-06 2.1E-10 91.2 11.0 76 53-129 287-362 (419)
83 KOG4212 RNA-binding protein hn 98.2 3.7E-06 8.1E-11 92.2 7.2 76 51-131 533-608 (608)
84 KOG0120 Splicing factor U2AF, 98.1 3.4E-06 7.4E-11 96.1 5.8 84 51-134 286-369 (500)
85 KOG0533 RRM motif-containing p 98.1 1.1E-05 2.4E-10 84.7 8.9 82 51-133 80-161 (243)
86 KOG4205 RNA-binding protein mu 98.0 9.9E-06 2.1E-10 88.1 5.8 81 53-134 96-176 (311)
87 KOG4209 Splicing factor RNPS1, 97.9 1.1E-05 2.5E-10 84.4 5.7 81 51-132 98-178 (231)
88 KOG2253 U1 snRNP complex, subu 97.9 0.00037 7.9E-09 80.8 16.8 34 529-563 514-547 (668)
89 KOG4454 RNA binding protein (R 97.8 7.3E-06 1.6E-10 83.3 2.4 79 53-133 8-86 (267)
90 KOG0106 Alternative splicing f 97.8 1.7E-05 3.7E-10 81.7 4.4 71 55-133 2-72 (216)
91 PF04059 RRM_2: RNA recognitio 97.7 0.00037 7.9E-09 63.6 10.2 78 55-132 2-85 (97)
92 KOG4660 Protein Mei2, essentia 97.7 5.6E-05 1.2E-09 85.8 6.0 72 51-127 72-143 (549)
93 KOG1190 Polypyrimidine tract-b 97.4 0.0013 2.8E-08 72.5 12.3 78 54-136 297-375 (492)
94 KOG1995 Conserved Zn-finger pr 97.3 0.00086 1.9E-08 73.1 8.6 84 51-134 63-154 (351)
95 KOG1457 RNA binding protein (c 97.2 0.0005 1.1E-08 70.4 6.1 67 52-122 208-274 (284)
96 KOG0147 Transcriptional coacti 97.2 0.00023 4.9E-09 80.9 3.0 84 50-134 175-258 (549)
97 PF11608 Limkain-b1: Limkain b 97.0 0.0024 5.1E-08 56.6 7.2 73 55-137 3-80 (90)
98 KOG1924 RhoA GTPase effector D 96.9 0.0016 3.5E-08 76.5 6.7 7 61-67 609-615 (1102)
99 KOG4849 mRNA cleavage factor I 96.9 0.0024 5.2E-08 69.0 7.4 95 51-145 77-174 (498)
100 KOG3152 TBP-binding protein, a 96.8 0.00081 1.8E-08 70.2 2.8 86 53-138 73-171 (278)
101 KOG4307 RNA binding protein RB 96.8 0.0076 1.7E-07 70.2 10.6 79 52-130 864-943 (944)
102 KOG4206 Spliceosomal protein s 96.7 0.0069 1.5E-07 62.5 9.1 78 50-132 142-220 (221)
103 KOG4676 Splicing factor, argin 96.7 0.00059 1.3E-08 74.7 1.3 66 52-122 149-214 (479)
104 KOG4210 Nuclear localization s 96.6 0.0014 3.1E-08 70.9 3.3 81 52-133 182-263 (285)
105 PF08777 RRM_3: RNA binding mo 96.6 0.0066 1.4E-07 56.2 7.0 85 55-145 2-93 (105)
106 KOG1924 RhoA GTPase effector D 96.4 0.0052 1.1E-07 72.4 6.4 6 57-62 590-595 (1102)
107 KOG4211 Splicing factor hnRNP- 96.4 0.0088 1.9E-07 67.6 7.9 76 53-132 9-84 (510)
108 KOG2314 Translation initiation 96.2 0.016 3.4E-07 66.5 8.8 77 52-129 56-139 (698)
109 KOG1456 Heterogeneous nuclear 96.2 0.067 1.4E-06 58.8 13.1 78 50-132 283-361 (494)
110 KOG0129 Predicted RNA-binding 96.0 0.019 4.1E-07 65.4 7.9 64 51-114 367-431 (520)
111 KOG0106 Alternative splicing f 95.9 0.0058 1.2E-07 63.4 3.3 71 50-128 95-165 (216)
112 COG5175 MOT2 Transcriptional r 95.9 0.017 3.6E-07 62.5 6.8 87 54-142 114-209 (480)
113 PF08952 DUF1866: Domain of un 95.7 0.043 9.3E-07 53.6 8.2 71 52-131 25-104 (146)
114 KOG1855 Predicted RNA-binding 95.5 0.013 2.7E-07 65.3 4.3 77 44-120 221-310 (484)
115 KOG1029 Endocytic adaptor prot 95.4 0.46 9.9E-06 56.7 16.2 12 219-230 257-268 (1118)
116 KOG4211 Splicing factor hnRNP- 95.0 0.069 1.5E-06 60.6 8.1 76 52-129 101-177 (510)
117 KOG1190 Polypyrimidine tract-b 94.5 0.12 2.5E-06 57.7 8.1 79 51-133 411-490 (492)
118 PF05172 Nup35_RRM: Nup53/35/4 94.5 0.19 4.1E-06 46.3 8.2 78 54-133 6-91 (100)
119 KOG0105 Alternative splicing f 94.4 0.18 4E-06 50.8 8.5 66 50-122 111-176 (241)
120 KOG1548 Transcription elongati 94.0 0.15 3.3E-06 55.7 7.6 79 52-134 263-352 (382)
121 KOG4676 Splicing factor, argin 94.0 0.097 2.1E-06 57.9 6.1 77 56-133 9-89 (479)
122 KOG4307 RNA binding protein RB 94.0 0.23 4.9E-06 58.6 9.2 79 51-130 431-510 (944)
123 KOG0112 Large RNA-binding prot 93.4 0.16 3.6E-06 61.3 7.1 79 50-134 451-531 (975)
124 KOG0120 Splicing factor U2AF, 93.2 0.21 4.5E-06 57.9 7.4 64 70-133 425-491 (500)
125 KOG0129 Predicted RNA-binding 92.9 0.58 1.3E-05 53.8 10.1 65 52-116 257-326 (520)
126 PF14605 Nup35_RRM_2: Nup53/35 92.9 0.25 5.4E-06 40.1 5.4 52 55-113 2-53 (53)
127 KOG4849 mRNA cleavage factor I 92.7 0.46 9.9E-06 52.0 8.6 73 57-141 348-421 (498)
128 KOG1365 RNA-binding protein Fu 92.5 0.33 7.1E-06 53.8 7.2 77 54-131 280-359 (508)
129 KOG0128 RNA-binding protein SA 92.4 0.05 1.1E-06 65.2 1.0 79 54-133 736-814 (881)
130 KOG0128 RNA-binding protein SA 92.3 0.014 3.1E-07 69.6 -3.5 76 53-128 666-741 (881)
131 PTZ00266 NIMA-related protein 91.9 0.89 1.9E-05 57.3 11.0 21 669-689 874-894 (1021)
132 KOG2193 IGF-II mRNA-binding pr 91.2 0.29 6.4E-06 54.7 5.1 74 55-135 2-77 (584)
133 KOG1996 mRNA splicing factor [ 91.0 0.66 1.4E-05 49.9 7.3 64 69-132 301-365 (378)
134 KOG1456 Heterogeneous nuclear 90.5 0.73 1.6E-05 51.0 7.3 75 59-138 127-203 (494)
135 PTZ00266 NIMA-related protein 90.4 2.7 5.9E-05 53.1 13.2 8 111-118 129-136 (1021)
136 KOG0112 Large RNA-binding prot 89.4 0.25 5.4E-06 59.8 3.0 80 51-131 369-448 (975)
137 KOG0115 RNA-binding protein p5 89.4 0.38 8.2E-06 50.9 4.0 62 55-117 32-93 (275)
138 KOG4285 Mitotic phosphoprotein 87.9 4.8 0.0001 43.8 11.0 62 56-125 199-260 (350)
139 KOG2068 MOT2 transcription fac 87.2 0.22 4.8E-06 54.5 0.7 86 55-142 78-169 (327)
140 KOG1365 RNA-binding protein Fu 85.9 1.3 2.8E-05 49.3 5.6 80 53-146 160-243 (508)
141 KOG4574 RNA-binding protein (c 84.7 2.1 4.5E-05 52.0 6.9 73 55-133 299-373 (1007)
142 KOG2891 Surface glycoprotein [ 83.5 52 0.0011 35.6 15.8 38 51-88 146-195 (445)
143 PF15023 DUF4523: Protein of u 83.1 5.1 0.00011 39.3 7.6 75 50-132 82-160 (166)
144 PF10309 DUF2414: Protein of u 82.0 6.1 0.00013 33.4 6.8 55 54-116 5-62 (62)
145 KOG4660 Protein Mei2, essentia 79.6 3.9 8.3E-05 47.7 6.5 80 54-133 361-472 (549)
146 PF03467 Smg4_UPF3: Smg-4/UPF3 79.4 1.4 3E-05 44.6 2.7 82 52-133 5-97 (176)
147 KOG4210 Nuclear localization s 78.9 1.5 3.2E-05 47.8 2.9 81 52-132 86-166 (285)
148 PF04847 Calcipressin: Calcipr 78.5 4.9 0.00011 41.1 6.3 60 68-133 9-70 (184)
149 TIGR03687 pupylate_cterm ubiqu 78.4 3 6.5E-05 30.5 3.3 24 727-750 4-27 (33)
150 COG5178 PRP8 U5 snRNP spliceos 77.2 2.1 4.5E-05 53.3 3.5 31 54-84 72-102 (2365)
151 KOG2202 U2 snRNP splicing fact 76.0 1.6 3.5E-05 46.3 2.0 56 77-133 92-147 (260)
152 PF08675 RNA_bind: RNA binding 75.0 7.6 0.00017 34.8 5.6 54 57-118 11-64 (87)
153 PF11517 Nab2: Nuclear abundan 73.6 18 0.00039 33.3 7.7 74 691-764 8-83 (107)
154 PF03880 DbpA: DbpA RNA bindin 71.5 18 0.00038 31.2 7.1 67 56-131 2-74 (74)
155 PF07576 BRAP2: BRCA1-associat 69.9 36 0.00079 32.0 9.3 66 55-122 14-80 (110)
156 KOG2135 Proteins containing th 69.0 3.2 7E-05 47.5 2.4 73 55-134 373-446 (526)
157 KOG4364 Chromatin assembly fac 63.3 1.6E+02 0.0034 35.8 14.5 15 415-429 349-363 (811)
158 KOG1923 Rac1 GTPase effector F 61.4 20 0.00044 43.5 7.1 6 703-708 699-704 (830)
159 KOG4364 Chromatin assembly fac 61.2 2.4E+02 0.0052 34.3 15.5 24 409-432 335-358 (811)
160 KOG1925 Rac1 GTPase effector F 57.5 21 0.00044 41.5 6.0 11 556-566 752-762 (817)
161 KOG2591 c-Mpl binding protein, 55.3 26 0.00057 41.1 6.4 70 52-128 173-246 (684)
162 KOG4246 Predicted DNA-binding 54.2 5.7 0.00012 48.2 1.1 51 93-147 155-205 (1194)
163 KOG3702 Nuclear polyadenylated 50.3 19 0.0004 43.1 4.4 64 692-755 21-84 (681)
164 PF05639 Pup: Pup-like protein 48.4 5.6 0.00012 34.2 -0.1 25 726-750 39-63 (69)
165 PF03276 Gag_spuma: Spumavirus 47.0 18 0.00039 42.4 3.5 13 101-113 325-337 (582)
166 KOG0226 RNA-binding proteins [ 46.5 28 0.0006 37.3 4.5 69 52-121 94-165 (290)
167 KOG0804 Cytoplasmic Zn-finger 45.0 70 0.0015 36.9 7.6 67 53-122 73-141 (493)
168 KOG2295 C2H2 Zn-finger protein 44.9 3.4 7.4E-05 48.0 -2.5 72 53-124 230-301 (648)
169 PF09707 Cas_Cas2CT1978: CRISP 44.8 35 0.00075 30.8 4.3 49 54-105 25-73 (86)
170 PF11767 SET_assoc: Histone ly 44.7 1.2E+02 0.0025 26.1 7.3 55 65-128 11-65 (66)
171 KOG2318 Uncharacterized conser 41.3 1.1E+02 0.0023 36.6 8.5 80 51-130 171-304 (650)
172 KOG2135 Proteins containing th 39.6 32 0.0007 39.7 4.0 63 693-755 7-73 (526)
173 KOG4410 5-formyltetrahydrofola 38.7 2.1E+02 0.0047 31.3 9.7 50 53-107 329-378 (396)
174 PRK15319 AIDA autotransporter- 35.3 44 0.00095 44.7 4.7 6 74-79 1749-1754(2039)
175 KOG4019 Calcineurin-mediated s 34.2 32 0.00068 35.2 2.6 75 53-133 9-89 (193)
176 KOG4454 RNA binding protein (R 33.2 9.8 0.00021 39.8 -1.1 76 52-128 78-157 (267)
177 cd07354 HN_L-delphilin-R1_like 32.6 86 0.0019 27.9 4.7 48 700-748 9-59 (80)
178 PF11671 Apis_Csd: Complementa 32.1 31 0.00067 33.3 2.0 20 356-376 27-46 (146)
179 PF11600 CAF-1_p150: Chromatin 31.2 4.4E+02 0.0096 27.4 10.7 73 309-381 99-171 (216)
180 KOG3938 RGS-GAIP interacting p 31.0 42 0.00092 36.2 3.0 57 698-754 263-322 (334)
181 PF02607 B12-binding_2: B12 bi 29.2 1.5E+02 0.0032 25.2 5.7 51 697-752 3-54 (79)
182 PRK11558 putative ssRNA endonu 27.4 89 0.0019 28.9 4.1 50 54-106 27-76 (97)
183 KOG4840 Predicted hydrolases o 26.9 1.1E+02 0.0023 32.7 5.0 85 54-138 37-122 (299)
184 KOG4483 Uncharacterized conser 26.9 1.1E+02 0.0024 34.8 5.5 55 54-115 391-446 (528)
185 PF13797 Post_transc_reg: Post 26.7 1.5E+02 0.0032 26.7 5.4 57 692-748 6-67 (87)
186 PF15473 PCNP: PEST, proteolyt 26.6 24 0.00052 34.7 0.3 19 530-548 88-106 (150)
187 KOG1925 Rac1 GTPase effector F 26.3 1.6E+02 0.0034 34.6 6.6 13 65-77 317-329 (817)
188 COG5178 PRP8 U5 snRNP spliceos 26.1 59 0.0013 41.5 3.4 18 2-19 4-21 (2365)
189 TIGR01795 CM_mono_cladeE monof 25.5 2.1E+02 0.0046 26.0 6.2 39 729-767 51-91 (94)
190 COG0724 RNA-binding proteins ( 23.7 97 0.0021 31.1 4.2 64 51-114 222-285 (306)
191 KOG2888 Putative RNA binding p 22.0 68 0.0015 35.6 2.7 19 67-85 82-100 (453)
192 TIGR01873 cas_CT1978 CRISPR-as 20.7 1.3E+02 0.0029 27.2 3.8 49 54-105 25-74 (87)
193 KOG3054 Uncharacterized conser 20.6 3.2E+02 0.0069 29.4 7.1 8 561-568 258-265 (299)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-69 Score=600.43 Aligned_cols=613 Identities=31% Similarity=0.472 Sum_probs=367.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-++..+||||||.+.+....+..++..||.|.+|+++. ||||.|.++....+|++.|+-..++|..|.+++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44578999999999999999999999999999998754 999999999999999999999999999999987
Q ss_pred ehhhHHHHHHHHHhhhhhhhhhhhhccccCCcccccccccccCCCCCCCc---------ccccCCCCCCCCCCCcccccc
Q 004150 131 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVV 201 (771)
Q Consensus 131 a~~~kk~le~~k~kk~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gd~~~~~~~ev~~~~~~ 201 (771)
+..+-..-+.++ . .....+-.|.++.+ ....++..+++++.+++-..+
T Consensus 108 d~q~~~n~~k~~--~---------------------~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s 164 (668)
T KOG2253|consen 108 DEQTIENADKEK--S---------------------IANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAAS 164 (668)
T ss_pred hhhhhcCccccc--c---------------------chhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhh
Confidence 722111100000 0 00111111222111 011111112222333333333
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchhhhccccccccccccccccccc
Q 004150 202 TEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKA 281 (771)
Q Consensus 202 ~~ed~~~d~~~~Eki~~~~eer~~~~~~~~~~~~~~~~~~~~~~~e~p~~~rd~~~~~d~~k~~~~~~~~~~~~~~d~~~ 281 (771)
+.....+|.-.++.+...+++......++.++.++... . .+++ .+.+..+ .+. .
T Consensus 165 ~~~~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~~~e~-----~--~~s~--~~~s~td-------------s~~--~-- 218 (668)
T KOG2253|consen 165 RRQIAEADDHCLELEKTETESNSALSKEAESKKSPFED-----T--KDSK--RSFSSTD-------------SGS--E-- 218 (668)
T ss_pred hhhhHHHHHHHHHHHHhhcccccccCcccccccCchhh-----h--chhh--hhhcccC-------------ccc--c--
Confidence 33333444444454444444332221111111100000 0 0000 0000000 000 0
Q ss_pred CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004150 282 SDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERERE 361 (771)
Q Consensus 282 ~e~er~~~~~~~rsr~r~rr~r~r~r~~ere~ere~~r~~r~rerer~r~~r~~~~~~re~E~~y~er~r~we~RER~r~ 361 (771)
+.++. ..+.++++.++ +.+...+.|...+.+++.+.....+..++.|...++..++|.||+.||+.|+.||+.++
T Consensus 219 -~d~~~-~~s~~~n~~rd---~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~ 293 (668)
T KOG2253|consen 219 -SDSAE-VNSSSLNYCRD---RSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKE 293 (668)
T ss_pred -chhhh-hcccccccchh---hccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHH
Confidence 00000 00111111111 11111111111111111111112244566788888999999999999999999999985
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHhhhcccchhhhhhhhhhHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHH
Q 004150 362 KERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAE 435 (771)
Q Consensus 362 ~~r~~ekerere~e------r~r~~e~l~d~dddrdd~rk~~r~~~~~~R~r~r~rE~e~D~~DR~rE~eE~~e~~~~~~ 435 (771)
+.+++|+.+|+++. ++++++|++||||++|+ .+||++++|..|++++.+|+|+|.+||.+|++|++|+|++..
T Consensus 294 Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~ 372 (668)
T KOG2253|consen 294 KEREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHS 372 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 55444444444332 36899999999999997 699999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCc----cchhhhcccCCcccCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccc
Q 004150 436 EEQLQQQQRDALKLLSDNAVNGSL----AEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMR 511 (771)
Q Consensus 436 ee~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 511 (771)
++..+.....+...+......... .+...++.........+.+.+++..|+... -.+..+-+ ...+-...
T Consensus 373 ~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~e--ee~~s~r~----~~~~d~~~ 446 (668)
T KOG2253|consen 373 EEEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDE--EEIKSQRD----DYKPDEND 446 (668)
T ss_pred hhcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccch--hhcccchh----hhhhhhhh
Confidence 766443322222222222111111 012222233332333333344433321100 00000000 00000011
Q ss_pred cCCCCccccccCcccCCCCccccCccCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhh
Q 004150 512 QSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRIS 591 (771)
Q Consensus 512 ~~~~~~~~k~~~~~~~~~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (771)
.-..+|...+.+++++++.+...+.+|-.-+...++....+..++||.|+.....+ .|+.++++..++. -+-
T Consensus 447 ~i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~ 518 (668)
T KOG2253|consen 447 HISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLP 518 (668)
T ss_pred hhhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCC
Confidence 23457777888899999888899988886555444566667889999987633222 2222222111111 000
Q ss_pred cccchhhhchHHHHhhhhhccccchhhhccccccccchhhhhhhhhhccccccccccccccCchhhhhhhHHhhhhcCCC
Q 004150 592 NVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 671 (771)
Q Consensus 592 ~t~~kee~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~ 671 (771)
.|+. .+...++|.+-...+ ++++.+.+++..- ..++.+.+ .|.+++++||.+||+
T Consensus 519 ~~~v----------------------~~~~~d~Dk~v~~~k-k~vp~dyd~n~~~-~~~~~~nd-eK~~~~ksLI~tIP~ 573 (668)
T KOG2253|consen 519 ETGV----------------------FREDDDEDKNVHEKK-KLVPLDYDRNQAR-AHSGESND-EKRKRIKSLIETIPT 573 (668)
T ss_pred Cccc----------------------ccccCCcccccchhh-hcccccCChhhcc-cccCCcch-hHHHHHHhhcccCCc
Confidence 1100 011112322222333 7777776664211 11222222 345689999999999
Q ss_pred CchhhhcccccccccchhhHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 004150 672 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 751 (771)
Q Consensus 672 ~k~~lf~~~i~w~~~d~~~~~~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klW 751 (771)
+|++||+|+|+|+.||.-+|+.+|+|||+|||+||||++|++||||||++|..|.+||+||++|.++||++|++||+|||
T Consensus 574 ~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmW 653 (668)
T KOG2253|consen 574 EKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMW 653 (668)
T ss_pred chHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc
Q 004150 752 RMLIFEIKKVETGLA 766 (771)
Q Consensus 752 rllife~~~~~~gl~ 766 (771)
||||||+.+++.||+
T Consensus 654 RlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 654 RLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHhhhhhccCC
Confidence 999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=6.9e-19 Score=153.09 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 004150 693 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 760 (771)
Q Consensus 693 ~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~lde~a~~fv~klWrllife~~~ 760 (771)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999998754
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=1.6e-17 Score=143.50 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=66.9
Q ss_pred hHhhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004150 690 ELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 759 (771)
Q Consensus 690 ~~~~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWrllife~~ 759 (771)
+..++|+|||+++|++|||++|++||+||+++|+.|.+|+.++..|..+++.+|+.||.+||+||||++.
T Consensus 4 v~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 4 LKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 3458899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.67 E-value=1.6e-17 Score=171.12 Aligned_cols=81 Identities=25% Similarity=0.591 Sum_probs=70.2
Q ss_pred cchhhHh-hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhh
Q 004150 686 YDKHELH-ERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKMWRMLIFEIKKV 761 (771)
Q Consensus 686 ~d~~~~~-~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-e~a~~fv~klWrllife~~~~ 761 (771)
||++.|+ +.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|+|||. .+|..||.+||-|||-+.-+-
T Consensus 35 VDmsKvnleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW~LliS~a~~s 114 (354)
T KOG2146|consen 35 VDMSKVNLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELWSLLISEASQS 114 (354)
T ss_pred cchhhcchhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHHHHHHhhcccc
Confidence 4444443 67899999999999999999999999999976 6799999999999999 899999999999999865555
Q ss_pred hhccc
Q 004150 762 ETGLA 766 (771)
Q Consensus 762 ~~gl~ 766 (771)
+.||.
T Consensus 115 ~~giP 119 (354)
T KOG2146|consen 115 QYGIP 119 (354)
T ss_pred ccCCc
Confidence 55553
No 5
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.52 E-value=1.9e-12 Score=143.54 Aligned_cols=82 Identities=11% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
..-.++|||.+|+..+...+|+.||++||.|+..+||++..+...+|||||++.+..+|.+||.+||.++|+|+.|.|.-
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34468999999999999999999999999999999999977778889999999999999999999999999999999975
Q ss_pred eh
Q 004150 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
+.
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 43
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=3.5e-13 Score=130.95 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||+|||+.+++.+|+.+|..||.|.++.++.++.+|+++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 764
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=4.3e-13 Score=147.00 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..+.+|||+|||+.+++++|..+|++||.|.+++++.++.||.++|||||.|.+.++|..||..|||..|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33557999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 347 ~~ 348 (352)
T TIGR01661 347 TN 348 (352)
T ss_pred cC
Confidence 64
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.2e-13 Score=125.62 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..++|||||||++.++++.|.+||+.||.|..+.+-.|+.+..++|||||+|.+.++|..||+.|+|+.|+.+.|.|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 75
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.9e-12 Score=128.58 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=80.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
..-...++|-|.|||.++++.+|..||.+||.|.++.++.|+.||.++|||||+|.+.++|.+||..|||+-++.-.|.|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEehh
Q 004150 129 KVDQA 133 (771)
Q Consensus 129 ~~a~~ 133 (771)
.|+.+
T Consensus 264 EwskP 268 (270)
T KOG0122|consen 264 EWSKP 268 (270)
T ss_pred EecCC
Confidence 99875
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=1.1e-11 Score=136.58 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||+|||+.+++.+|+.+|..||.|.+|+|+.+..+|+++|||||+|.+.++|..||..||+..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=4.8e-12 Score=105.50 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004150 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 57 VfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
|||+|||..+++.+|..+|+.||.|..+.+..+ .++.+++||||.|.+.++|..|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999885
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.34 E-value=4.5e-12 Score=138.94 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+.++|||+|||+.+++.+|+.+|+.||.|.+|+++.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 004150 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.3e-11 Score=127.24 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=80.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
...+.+||||+-|++.+++..|+..|..||.|..+.||.+..||+++|||||+|...-+...|....+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eehh
Q 004150 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 8654
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=4.7e-11 Score=126.23 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...+..|||+|||+.+.+.+|+.+|.+||.|+++.|+.+ ...++|||||+|+++.+|.+|-..|||..|.|++|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 344688999999999999999999999999999999997 567899999999999999999999999999999999988
Q ss_pred ehhh
Q 004150 131 DQAT 134 (771)
Q Consensus 131 a~~~ 134 (771)
+.+.
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7664
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.21 E-value=1.2e-10 Score=134.14 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||||||+.+++++|..+|..||.|..+.++.+..+|.++|||||+|.+...|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=6.9e-11 Score=137.57 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||+||++.+++++|+.+|+.||.|.+|+++.++.+|+++|||||.|.+.++|..||..||++.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=8.6e-11 Score=120.67 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....|||-||++.+.+..|.++|+.||.|..+++++|..|.+++|||||++.+.++|..||..|||+.++++.|.|.|-
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 004150 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 4
No 18
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.6e-11 Score=122.55 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
+...++||||+|++.+..+.|+.+|.+||.|+...|+.|+.+|+++|||||+|.+.++|.+|+. -..-.|+|++-.|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 4457899999999999999999999999999999999999999999999999999999999998 445678999988876
Q ss_pred eh
Q 004150 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 54
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=6.2e-11 Score=137.92 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...++|||||||+.+++++|+.+|..||.|.+|.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999974
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=1.2e-10 Score=98.02 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004150 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 57 VfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
|||+|||++++..+|..+|+.||.|..+.+..+.. |.++++|||+|.+.++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999855 99999999999999999999999999999999874
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.17 E-value=1.1e-10 Score=122.35 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
.++|||||||+.+++.+|+.+|+.||.|.++.|+.+. .++|||||+|.+..+|..||. |+|..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356899999999999999996 999999999999988653
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.16 E-value=1.5e-10 Score=127.29 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~--esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
....+||||||++.+++++|..+|..||.|..+.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4467899999999999999999999999999999994 577 89999999987 68999999999999999999997
Q ss_pred EehhhHHHHHHHHHhhh
Q 004150 130 VDQATREYLERYVDKKT 146 (771)
Q Consensus 130 ~a~~~kk~le~~k~kk~ 146 (771)
.+. ..||+..+..++
T Consensus 84 KAK--P~YLeRLkrERe 98 (759)
T PLN03213 84 KAK--EHYLARLKREWE 98 (759)
T ss_pred ecc--HHHHHHHHHHHH
Confidence 664 578877765443
No 23
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=2e-11 Score=125.66 Aligned_cols=87 Identities=15% Similarity=0.257 Sum_probs=80.4
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004150 46 TVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (771)
Q Consensus 46 ~~~~~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (771)
......+..|+|||-.||..+++.+|.++|-.||.|++.++..|+.|..++|||||.|.++.++..||..|||+.|+.++
T Consensus 277 qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 277 QQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred hhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 33445778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeh
Q 004150 126 LMLKVDQ 132 (771)
Q Consensus 126 L~V~~a~ 132 (771)
|+|.+-.
T Consensus 357 LKVQLKR 363 (371)
T KOG0146|consen 357 LKVQLKR 363 (371)
T ss_pred hhhhhcC
Confidence 9986543
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=5.6e-12 Score=123.69 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-..+.-|||||||+.+|+.+|.-+|+.||.|+.+.+++|..||+++||||+.|++..++.-|+..|||+.|.|+.|+|+-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred eh
Q 004150 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 44
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=2.4e-10 Score=130.03 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..++|||+|||+.+++.+|..+|..||.|..|.++.+..+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999976
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=2.3e-10 Score=125.03 Aligned_cols=87 Identities=25% Similarity=0.419 Sum_probs=80.2
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEE
Q 004150 48 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQEL 126 (771)
Q Consensus 48 ~~~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L 126 (771)
.+..+..|-||||.||.++.+++|.-||.+.|.|..++++.|+.+|.++||+||+|++.+.|..||..||+++|. |+.|
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 333456899999999999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred EEEEehhh
Q 004150 127 MLKVDQAT 134 (771)
Q Consensus 127 ~V~~a~~~ 134 (771)
.|.++...
T Consensus 157 gvc~Svan 164 (506)
T KOG0117|consen 157 GVCVSVAN 164 (506)
T ss_pred EEEEeeec
Confidence 99887653
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.12 E-value=2.3e-10 Score=126.29 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~ 130 (771)
..++|||+|||..+++++|+.+|+.||.|..|.|+.+..+|+++|||||+|.+.++|..||..||+..|.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999998875 6888888
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 765
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=4.5e-10 Score=92.17 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 56 tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+|||+|||..++..+|..+|..||.|..+.+..+. +.+.|||||+|.+...|..|+..|++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998874 888999999999999999999999999999999887
No 29
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=3.4e-10 Score=116.38 Aligned_cols=89 Identities=16% Similarity=0.344 Sum_probs=84.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.....++|.|.-||.++|.++|+.||+..|.|.+|++++|+.+|.+.|||||.|.++.+|++||..|||..|..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EehhhHHHH
Q 004150 130 VDQATREYL 138 (771)
Q Consensus 130 ~a~~~kk~l 138 (771)
++.++...+
T Consensus 117 yARPSs~~I 125 (360)
T KOG0145|consen 117 YARPSSDSI 125 (360)
T ss_pred eccCChhhh
Confidence 999876666
No 30
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=1.3e-10 Score=130.50 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~ 134 (771)
+.|||||||+.++++.|..+|+.+|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 004150 135 RE 136 (771)
Q Consensus 135 kk 136 (771)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.07 E-value=4.8e-10 Score=130.33 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V~ 129 (771)
....++|||+|||.++++++|..+|..||.|..++|+.| .+|+++|||||+|.+.++|..||..||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 334699999999999999999999999999999999999 79999999999999999999999999999985 7777776
Q ss_pred Eeh
Q 004150 130 VDQ 132 (771)
Q Consensus 130 ~a~ 132 (771)
++.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 543
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.06 E-value=7.3e-10 Score=129.63 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||+||+..+++++|+.+|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 79999999999999999999999999999999999999998
Q ss_pred hhhHH
Q 004150 132 QATRE 136 (771)
Q Consensus 132 ~~~kk 136 (771)
.....
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86543
No 33
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=6.7e-10 Score=113.43 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
.++|||||||..+++.+|..+|..||.|..+.++.+..+|.++|||||.|.+.+++..|+..|+|..|+|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999998653
No 34
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.05 E-value=2.9e-10 Score=113.69 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|.|-||.+.++.++|..+|.+||.|..|.|.+|+.|+.++||+||-|.+..+|+.|+..|+|..|+|+.|.|.+|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 64
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.05 E-value=6.3e-10 Score=130.18 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=75.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 56 tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+|||||||+++++.+|..+|+.||.|.+|+++++..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999988999999999999999999999999999999999999998753
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.05 E-value=7.9e-10 Score=114.37 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..+||||+||++.+++.+|+.+|+.||.|..|.|+.+ +...+||||+|.++..+..||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 99999999999986543
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=1.1e-09 Score=89.41 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 59 VgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|||||.|.+.++|..|+..|++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999887
No 38
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=4.7e-10 Score=109.87 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..+.||||||+..++..+|..+|..||.|.++-|... +.||+||+|+++.+|..|+..|+|..|+|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3789999999999999999999999999988766553 56999999999999999999999999999999998766
Q ss_pred h
Q 004150 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.04 E-value=9.9e-10 Score=125.02 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||+|||+.+++.+|..+|+.||.|..+.++.+..+|+++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999998999999999999999999999997 999999999999986
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 165 ~~~ 167 (457)
T TIGR01622 165 SQA 167 (457)
T ss_pred cch
Confidence 543
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=2.4e-09 Score=123.30 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.++.++|||+||++ .++++.|..+|+.||.|.+++++.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred Eehh
Q 004150 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8754
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=4.4e-10 Score=116.34 Aligned_cols=85 Identities=20% Similarity=0.343 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
......||||-|+..++.+.|+..|.+||.|..++|++|..|+|++|||||.|.+.++|++||..|||.-|+++.|+.+|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhH
Q 004150 131 DQATR 135 (771)
Q Consensus 131 a~~~k 135 (771)
+....
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 87543
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=3.9e-10 Score=111.04 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
....|||||||+..+++..|.++|-++|+|+.+++..|+.+..++|||||+|.+.++|.=|+.+||.+.|-|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred h
Q 004150 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 4
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.6e-09 Score=112.20 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=73.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
..+..|+||||||+..++++.|++.|+.||.|..+++..+. ||+||.|++.++|..||..+|+.+|+|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 45678999999999999999999999999999999998874 999999999999999999999999999999999
Q ss_pred Eehh
Q 004150 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|-..
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 8764
No 44
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=4.1e-10 Score=120.03 Aligned_cols=77 Identities=29% Similarity=0.446 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-|.||||.|++.+.++.|+..|..||.|+++.+.+|+.||+++||+||+|+-++.|.-|+..|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999975
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=6.1e-09 Score=85.82 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 56 tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
+|||+|||..++..+|..+|..||.|..+.+..++ .+.+.|+|||.|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999875 447889999999999999999999999999999998864
No 46
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.3e-10 Score=113.21 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...+|||||+|...+++.-|...|-+||.|..+.++.|-.+++++|||||+|...++|.+||..||+.+|.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 004150 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 763
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=102.02 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
+.....|||.++...+++++|...|.-||.|+.+.+-.|+.||..+||++|+|++...|..|+..|||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
|--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 853
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=3.9e-09 Score=115.20 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I---~Gr~L~ 127 (771)
+....++|||.||..+++.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|..|+.+||.... +...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 45577899999999999999999999999999999999999999999999999999999999999988643 357899
Q ss_pred EEEehhhHHHH
Q 004150 128 LKVDQATREYL 138 (771)
Q Consensus 128 V~~a~~~kk~l 138 (771)
|++++.-+..+
T Consensus 111 vk~Ad~E~er~ 121 (510)
T KOG0144|consen 111 VKYADGERERI 121 (510)
T ss_pred ecccchhhhcc
Confidence 99988755443
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.91 E-value=7.1e-09 Score=119.56 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=61.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcC------------CeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G------------~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Ln 117 (771)
.....++|||||||+.+++.+|..+|..|+ .|..+. .++.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 456678999999999999999999999752 223332 24557999999999999999995 99
Q ss_pred CceeCCeEEEEE
Q 004150 118 KFNIDGQELMLK 129 (771)
Q Consensus 118 g~~I~Gr~L~V~ 129 (771)
|+.|.|+.|.|.
T Consensus 244 g~~~~g~~l~v~ 255 (509)
T TIGR01642 244 SIIYSNVFLKIR 255 (509)
T ss_pred CeEeeCceeEec
Confidence 999999999985
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=2.3e-08 Score=90.54 Aligned_cols=82 Identities=16% Similarity=0.290 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
....|||.|||+.+|.+++..||+.||.|..+++.- +...+|-+||.|++..+|.+|+..|+|+.++++.|.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 367899999999999999999999999999998864 45667999999999999999999999999999999998877
Q ss_pred hhHHH
Q 004150 133 ATREY 137 (771)
Q Consensus 133 ~~kk~ 137 (771)
+...+
T Consensus 94 ~~~~~ 98 (124)
T KOG0114|consen 94 PEDAF 98 (124)
T ss_pred HHHHH
Confidence 65443
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=4.9e-09 Score=117.05 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+-..|.|.|||+.|...+|+.+|+.||.|..+.|++. ..|+.+|||||.|.....|..||..|||..|+|++|.|+|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999976 588888999999999999999999999999999999999998
Q ss_pred hhHHHHH
Q 004150 133 ATREYLE 139 (771)
Q Consensus 133 ~~kk~le 139 (771)
....|-.
T Consensus 195 ~Kd~ye~ 201 (678)
T KOG0127|consen 195 DKDTYED 201 (678)
T ss_pred ccccccc
Confidence 7655543
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.3e-09 Score=113.09 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+|-.-|||..|++.+++++|.-||+.||.|.+|.+++|..||.+..|+||+|.+.+++..|...|+++.|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHH
Q 004150 131 DQATRE 136 (771)
Q Consensus 131 a~~~kk 136 (771)
+++..+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998765
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.77 E-value=2.3e-08 Score=115.26 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 130 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~L--ng~~I~Gr~L~V~~ 130 (771)
++.+|||+|||+.+++.+|..+|+.||.|.+|.++.+ ++||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999998864 479999999999999999864 78999999999999
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.77 E-value=7.8e-09 Score=116.02 Aligned_cols=78 Identities=26% Similarity=0.502 Sum_probs=73.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..||||||.+++++.+|+.+|..||.|..+.+..|..||.++||||++|.+.+.|..|+..|||++|.|+.|+|.+..
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 339999999999999999999999999999999997799999999999999999999999999999999999987644
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.76 E-value=9.1e-09 Score=107.67 Aligned_cols=71 Identities=18% Similarity=0.407 Sum_probs=66.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
..|||||||..++...|+.||.+||+|++|.|+.+ ||||..++...+..||+.|||..|+|..|.|.-+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 46999999999999999999999999999999986 999999999999999999999999999999975443
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.1e-08 Score=109.31 Aligned_cols=95 Identities=26% Similarity=0.467 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCC-------CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHH
Q 004150 38 VVRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 110 (771)
Q Consensus 38 ~~~p~~~p~~~~-------~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~ 110 (771)
+++|+++|++.+ .......|||..+.++.++.+|+.+|..||.|++|.+.+++..+.++||||++|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 456777777666 2456789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEeh
Q 004150 111 RALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 111 ~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.||..||-+.|+|..|+|.-+-
T Consensus 267 eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHhhhcchhhcccceEeccccc
Confidence 9999999999999999997554
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.75 E-value=3e-08 Score=115.51 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~--G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...+|||+||+..+++++|+.+|+.| |.|..+.++. +||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+.+
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 965
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.6e-08 Score=99.94 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||||||.++.+.+|+.||.+||.|..+.+-.. ..+.+||||+|+++-+|..||..-+|+.++|..|.|.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 345789999999999999999999999999999987443 34458999999999999999999999999999999998
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
...
T Consensus 80 prg 82 (241)
T KOG0105|consen 80 PRG 82 (241)
T ss_pred ccC
Confidence 775
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=98.71 E-value=6.4e-08 Score=82.44 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeecCCC--CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 68 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 68 e~~L~~lF~----~~G~V~s~k-iv~d~~t--Gk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+.+|..+|. .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 357788888 999999995 6666555 999999999999999999999999999999999976
No 60
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=4.3e-08 Score=109.71 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh-----CC-ceeCCeE
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQE 125 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~L-----ng-~~I~Gr~ 125 (771)
.-..||||.|||+++++..|...|++||.|.++.++.++.||.++|+|||.|.+...+..||.+. .| +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34689999999999999999999999999999999999999999999999999999999999866 33 7899999
Q ss_pred EEEEEehhhH
Q 004150 126 LMLKVDQATR 135 (771)
Q Consensus 126 L~V~~a~~~k 135 (771)
|.|..+-..+
T Consensus 370 Lkv~~Av~Rk 379 (678)
T KOG0127|consen 370 LKVTLAVTRK 379 (678)
T ss_pred EeeeeccchH
Confidence 9998876643
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.66 E-value=1.2e-07 Score=76.91 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.5
Q ss_pred HHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 71 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 71 L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
|..+|++||.|..+.+.... .+++||+|.+.++|..|+..|||..++|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 689999999999999999999999999999999985
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=3.9e-08 Score=107.55 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+...++||++||....+.+|...|..||.|++.++..|+.||.++|||||.|++..+|..||..|||+.|++++|+|.+
T Consensus 421 GpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQl 500 (510)
T KOG0144|consen 421 GPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQL 500 (510)
T ss_pred CCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred e
Q 004150 131 D 131 (771)
Q Consensus 131 a 131 (771)
.
T Consensus 501 k 501 (510)
T KOG0144|consen 501 K 501 (510)
T ss_pred e
Confidence 4
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=9.7e-08 Score=104.94 Aligned_cols=75 Identities=16% Similarity=0.359 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....|||.||+.++|++.|+.+|+.||.|..++.++| ||||.|.+.++|.+||..+||..|+|..|.|.++
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34577999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred hhh
Q 004150 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
.+.
T Consensus 329 KP~ 331 (506)
T KOG0117|consen 329 KPV 331 (506)
T ss_pred CCh
Confidence 874
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=94.79 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~-G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.....-+||+.||..+.+..|..+|..| |.|..+++.+++.||.++|||||+|++.+-|..|-..||++.|+|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445679999999999999999999988 678888888999999999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004150 130 VDQAT 134 (771)
Q Consensus 130 ~a~~~ 134 (771)
|=.+-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87664
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=92.86 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
...+.++|||||.+.+.+..|..+|+.||.+.. -++++++.||.++||||+.|.+.+.+.+|+..+||..++.+++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 344688999999999999999999999998765 4678888899999999999999999999999999999999999998
Q ss_pred Eehh
Q 004150 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
++-.
T Consensus 173 ya~k 176 (203)
T KOG0131|consen 173 YAFK 176 (203)
T ss_pred EEEe
Confidence 7753
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.1e-07 Score=99.64 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++||||||++.++..+|+..|.+||.|..|+|+.+ |+||.|.-.++|..|++.|++.++.|+.|+|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 557889999999999999999999999999999999986 999999999999999999999999999999988
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+.+
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 765
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=4.4e-07 Score=99.31 Aligned_cols=79 Identities=25% Similarity=0.416 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..+.+||.|||+++.+.+|+.||. +.|.|..|.+..| .+||++||+.|+|.+++.+.+|++.||.+.+.|+.|.|+-+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 355699999999999999999997 7899999999999 79999999999999999999999999999999999999755
Q ss_pred h
Q 004150 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 4
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=4.4e-07 Score=101.13 Aligned_cols=79 Identities=24% Similarity=0.453 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..+..|||-||++.++...|..+|+.||.|++|++..+ .+| ++|| ||.|.+.++|..||..|||..+.|++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 33444999999999999999999999999999999998 577 9999 99999999999999999999999999999766
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 151 ~~ 152 (369)
T KOG0123|consen 151 ER 152 (369)
T ss_pred cc
Confidence 54
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.43 E-value=6.5e-07 Score=95.99 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I 121 (771)
.....+.|||.|||.++|.+++..+|++||.|.+ |++..+ ..|+++|=|.|.|...+++.-|+.+|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3445677999999999999999999999998864 788888 5799999999999999999999999999999
Q ss_pred CCeEEEEEEehh
Q 004150 122 DGQELMLKVDQA 133 (771)
Q Consensus 122 ~Gr~L~V~~a~~ 133 (771)
.|+.|+|..|..
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999987764
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.42 E-value=2.1e-06 Score=87.40 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee-cCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CeEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQEL 126 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~-d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~---Gr~L 126 (771)
....+||||.+||.++.--+|..||..|-....+.+-. ++...-++-+|||+|.+...|..|+..|||+.++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34578999999999999999999999997666665433 3222234579999999999999999999999997 7899
Q ss_pred EEEEehhh
Q 004150 127 MLKVDQAT 134 (771)
Q Consensus 127 ~V~~a~~~ 134 (771)
.|.++.+.
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 99988764
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.39 E-value=7.5e-07 Score=91.06 Aligned_cols=84 Identities=15% Similarity=0.313 Sum_probs=75.9
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 54 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~----lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
..||||.||+..+..++|+. ||+.||.|+.+... .+.+.+|-|||.|.+...|..|+..|+|+.+-|+.+.|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998887 99999999988765 378999999999999999999999999999999999999
Q ss_pred EehhhHHHHHH
Q 004150 130 VDQATREYLER 140 (771)
Q Consensus 130 ~a~~~kk~le~ 140 (771)
++....+++..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99887777744
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=6.2e-07 Score=103.46 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...+.|+|.|||+..+...++.||+.||.|.+|+++.-...+.++|||||+|-++.+|.+|+.+|.++.|-|+.|++.|+
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 34689999999999999999999999999999998775456778999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHH
Q 004150 132 QATREYLERYV 142 (771)
Q Consensus 132 ~~~kk~le~~k 142 (771)
...-. ++...
T Consensus 691 ~~d~~-~e~~r 700 (725)
T KOG0110|consen 691 KSDNT-MEALR 700 (725)
T ss_pred ccchH-HHHHH
Confidence 76433 44433
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=9e-07 Score=91.85 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 129 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~---Gr~L~V~ 129 (771)
..++||||-|...-++++++.+|..||.|.+|.+.+. .+|.++||+||.|.+.-+|..||..|||...+ ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5789999999999999999999999999999999998 59999999999999999999999999997654 4679999
Q ss_pred EehhhHH
Q 004150 130 VDQATRE 136 (771)
Q Consensus 130 ~a~~~kk 136 (771)
+++..++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9886533
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.28 E-value=1.4e-06 Score=101.26 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
++|||||+|+.++++.+|..+|..||.|.++.++.. +|||||.+....+|.+||..|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999998765 49999999999999999999999999999999999875
No 75
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.28 E-value=1e-06 Score=91.11 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....||+|-|.-.++++.|-..|.+|-.....+++++.-||+++|||||.|.++.++.+|+..|+|..++.+.|.+.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred hhhHHHHHHHH
Q 004150 132 QATREYLERYV 142 (771)
Q Consensus 132 ~~~kk~le~~k 142 (771)
......++..+
T Consensus 268 ~wkeRn~dvv~ 278 (290)
T KOG0226|consen 268 EWKERNLDVVK 278 (290)
T ss_pred hHHhhhhHHHh
Confidence 54444444433
No 76
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.26 E-value=2.2e-06 Score=92.04 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=70.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHH-HHhCCceeCCeEEE
Q 004150 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELM 127 (771)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al-~~Lng~~I~Gr~L~ 127 (771)
+.+....|||||+|...+++.+|+.+|.+||.|.++.++... +|+||+|.+..+|..|. ..++.+.|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345668899999999999999999999999999999887753 69999999999999666 67788899999999
Q ss_pred EEEehh
Q 004150 128 LKVDQA 133 (771)
Q Consensus 128 V~~a~~ 133 (771)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999887
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=2.4e-06 Score=98.83 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC----CCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tG----k~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.++|||.||++.++...|..+|..+|.|.++.|..-+ .+ .+.|||||+|.++++|.+|+..|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887653 22 345999999999999999999999999999999999
Q ss_pred Eeh
Q 004150 130 VDQ 132 (771)
Q Consensus 130 ~a~ 132 (771)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 887
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=3.5e-06 Score=97.06 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~---~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
.+..++||||||++.+++.+|...|+.||+|.+++|++.+ .......||||.|-+..+|.+|+..|+|..|.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557889999999999999999999999999999999865 2345567999999999999999999999999999999
Q ss_pred EEEehh
Q 004150 128 LKVDQA 133 (771)
Q Consensus 128 V~~a~~ 133 (771)
+.|..+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.20 E-value=1.1e-06 Score=95.39 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..++||||+|++.++++.|+.+|.+||.|..|.++.++.++.++|||||+|.++..+.++|. ..-+.|+|+.|.++.+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999888876 44567788888776655
Q ss_pred h
Q 004150 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=3.4e-06 Score=94.07 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=70.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~ 134 (771)
..|||| +.+++..|..+|+.+|.|+++++++|. | +.|||||.|.++.+|.+||..||...|.|+.|.|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 999999999999999999999999995 4 9999999999999999999999999999999999998754
Q ss_pred HHH
Q 004150 135 REY 137 (771)
Q Consensus 135 kk~ 137 (771)
..+
T Consensus 76 ~~~ 78 (369)
T KOG0123|consen 76 PSL 78 (369)
T ss_pred Cce
Confidence 333
No 81
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.17 E-value=6.8e-06 Score=93.26 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I---~Gr~ 125 (771)
....++.|||.||...+|...|+.||+ .||.|... +.| +.+.+|||.|.+.++|...+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456678899999999999999999999 56666655 455 5667999999999999999999999987 5788
Q ss_pred EEEEEehh
Q 004150 126 LMLKVDQA 133 (771)
Q Consensus 126 L~V~~a~~ 133 (771)
|.+.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99988765
No 82
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.16 E-value=9.7e-06 Score=91.23 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
...+|||+|||++++...|..+|..||.|....|..-.-.++..|||||+|.+..++..||. -+-..|++++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 45669999999999999999999999999988765532235555999999999999999998 45889999999994
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.15 E-value=3.7e-06 Score=92.24 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....|+|||.|||+++|+..|+.-|..||.|.++.|+. +|+++| .|.|.+++.|++|+.+|+|..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45689999999999999999999999999999999853 688877 8999999999999999999999999999986
Q ss_pred e
Q 004150 131 D 131 (771)
Q Consensus 131 a 131 (771)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.10 E-value=3.4e-06 Score=96.05 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....+.+|||+||..+++..+.+++..||.+....++.+..+|.++||+||+|.++.-+..|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34577899999999999999999999999999999999998899999999999999999999999999999999999976
Q ss_pred ehhh
Q 004150 131 DQAT 134 (771)
Q Consensus 131 a~~~ 134 (771)
+-..
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 6543
No 85
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.09 E-value=1.1e-05 Score=84.72 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|+|.||++.|++.+|+++|..||.+..+.+..+ .+|.+.|.|-|.|....+|.+||..|||+.++|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444688999999999999999999999999989888888 5999999999999999999999999999999999998875
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.95 E-value=9.9e-06 Score=88.07 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
....||||+||+++++.+|+.+|.+||.|..+.++.|..+..++|||||+|.+.+++..++. .+.+.|+|+.+.|+.+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999998887 78889999999998777
Q ss_pred hh
Q 004150 133 AT 134 (771)
Q Consensus 133 ~~ 134 (771)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 63
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.93 E-value=1.1e-05 Score=84.41 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=74.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
..+...+||||+.+.++-..+...|..||.|..+.+..+...|.++||+||+|.+...+..|+. |+|..|.|..+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4567889999999999999999999999999999999998888999999999999999999999 999999999999865
Q ss_pred eh
Q 004150 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
-.
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 43
No 88
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.87 E-value=0.00037 Score=80.79 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=26.8
Q ss_pred CCccccCccCCCCCCcchhcccCCCCcccCCCChH
Q 004150 529 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 563 (771)
Q Consensus 529 ~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y~~e 563 (771)
.+.+.+.+||+.++|.|-+-..++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999998875545544 9999999884
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.85 E-value=7.3e-06 Score=83.32 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
...||||+|+...++++.|.++|-..|.|..+.|..+ ..++.+ |+||.|.+..++.-|+.++||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3679999999999999999999999999999999887 577777 99999999999999999999999999999887644
Q ss_pred h
Q 004150 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=1.7e-05 Score=81.71 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=64.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
..||||+||+.+.+.+|..||..||.+..+.+.. |||||.|.+.-+|.-||..||+..|+|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4699999999999999999999999999987754 6999999999999999999999999998888877764
No 91
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00037 Score=63.61 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=67.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 128 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~--G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~----Gr~L~V 128 (771)
+||.|.|||-..+..+|..++..+ |..--+.++.|..++-+.|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999998743 56666778888889999999999999999999999999999886 566777
Q ss_pred EEeh
Q 004150 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 92
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=5.6e-05 Score=85.82 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
..+..+|+|-|||..|+.+.|..+|+.||.|..+.. +-...|.+||+|-+...|.+|+..|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455789999999999999999999999999999643 445668999999999999999999999999988877
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.44 E-value=0.0013 Score=72.51 Aligned_cols=78 Identities=14% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~-~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.+.|.|.||.. .+|.+.|..+|+.||.|.+++|...+. --+.|.|.+...|.-|+.+|+|..|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888875 689999999999999999999988631 579999999999999999999999999999998876
Q ss_pred hhHH
Q 004150 133 ATRE 136 (771)
Q Consensus 133 ~~kk 136 (771)
-+-.
T Consensus 372 H~~v 375 (492)
T KOG1190|consen 372 HTNV 375 (492)
T ss_pred Cccc
Confidence 5433
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.27 E-value=0.00086 Score=73.07 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
.....+|||-+||..++...|..+|.+||.|.. +.|.+++.|+++++=|.|+|.++..|+.||..+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999998853 567788899999999999999999999999999999999
Q ss_pred CeEEEEEEehhh
Q 004150 123 GQELMLKVDQAT 134 (771)
Q Consensus 123 Gr~L~V~~a~~~ 134 (771)
+..|.|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 988888766543
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.25 E-value=0.0005 Score=70.43 Aligned_cols=67 Identities=16% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
..+.||||.||.++|+++.|+.+|+.|......+|.. ..|. +.+|+.|++.+.|..||..|+|+.|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 3467999999999999999999999997766666532 1333 58999999999999999999998763
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.16 E-value=0.00023 Score=80.88 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=78.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
......|||+..|+..++.-+|..+|+.+|.|..+.++.|..++.++|.|||+|.+..++..||. |.|.-+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 46678999999999999999999999999999999999999999999999999999999999996 99999999999998
Q ss_pred Eehhh
Q 004150 130 VDQAT 134 (771)
Q Consensus 130 ~a~~~ 134 (771)
...+-
T Consensus 254 ~sEae 258 (549)
T KOG0147|consen 254 LSEAE 258 (549)
T ss_pred ccHHH
Confidence 76653
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.01 E-value=0.0024 Score=56.55 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=49.1
Q ss_pred CEEEEcCCCCCCCHH----HHHHHHHhcC-CeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 55 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 55 ~tVfVgNLp~~vte~----~L~~lF~~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
+.|||.|||.+.... -|++|+..|| .|.++ . .+.|++.|.+.+.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988875 5677888897 56665 2 2689999999999999999999999999999999
Q ss_pred EehhhHHH
Q 004150 130 VDQATREY 137 (771)
Q Consensus 130 ~a~~~kk~ 137 (771)
+......+
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 87654333
No 98
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.89 E-value=0.0016 Score=76.48 Aligned_cols=7 Identities=0% Similarity=-0.197 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 004150 61 KIAPTAD 67 (771)
Q Consensus 61 NLp~~vt 67 (771)
.||+.+.
T Consensus 609 vlP~gLk 615 (1102)
T KOG1924|consen 609 VLPFGLK 615 (1102)
T ss_pred cCCCCCC
Confidence 4554443
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.88 E-value=0.0024 Score=69.04 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G--~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
......+|||||-+.+|+.+|.+.+...| .+..+++..++.+|.++||++|...+..++...+.+|....|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34466799999999999999999998877 5677788888899999999999999999999999999999999976555
Q ss_pred E-EehhhHHHHHHHHHhh
Q 004150 129 K-VDQATREYLERYVDKK 145 (771)
Q Consensus 129 ~-~a~~~kk~le~~k~kk 145 (771)
- +.......++...+|.
T Consensus 157 ~~~NK~~~ak~E~~~~K~ 174 (498)
T KOG4849|consen 157 LSYNKTNQAKLEDAQAKN 174 (498)
T ss_pred eccchhhHHHHHHHHhhh
Confidence 3 3344455555555544
No 100
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.77 E-value=0.00081 Score=70.24 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC--------CCCce----EEEEEeCCHHHHHHHHHHhCCce
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 120 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~t--------Gk~kG----fGFVeF~~~esA~~Al~~Lng~~ 120 (771)
..-.||+++||+.+...-|+.||+.||.|-.+.+.....+ |.+.+ =|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999887654323 23322 37899999999999999999999
Q ss_pred eCCeEEE-EEEehhhHHHH
Q 004150 121 IDGQELM-LKVDQATREYL 138 (771)
Q Consensus 121 I~Gr~L~-V~~a~~~kk~l 138 (771)
|+|++-. +..+.-.-+||
T Consensus 153 Iggkk~S~~~~dlWNmKYL 171 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYL 171 (278)
T ss_pred cCCCCCCchHHhhhhhhhc
Confidence 9987533 33333344555
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.75 E-value=0.0076 Score=70.22 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCCC-EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 52 KPQT-KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 52 ~~~~-tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+.+ -|-|.|+|+.++-++|.++|.-|-.+-...+++....|++.|-|.|.|++.++|.+|..-|++..|..+++.+.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 677999999999999999999997655433334336899999999999999999999999999999999988754
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.73 E-value=0.0069 Score=62.53 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (771)
..++..++|+.|||..++...|..+|..|+....++++... .+.+||+|.+...+..|...|.|+.|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35668899999999999999999999999999999887642 379999999999999999999999887 677777
Q ss_pred EEeh
Q 004150 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6653
No 103
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.71 E-value=0.00059 Score=74.66 Aligned_cols=66 Identities=14% Similarity=-0.026 Sum_probs=53.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
....||+|++|+..+...++..+|..+|.|....+. .|-...||.+.|....+...|+. ++|+.+.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 345889999999999999999999999999887653 34455688899999999999988 6666653
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.60 E-value=0.0014 Score=70.94 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=72.6
Q ss_pred CCCCEEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 52 KPQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 52 ~~~~tVf-VgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+..++| |+++++.++.+.|..+|..||.|..+++..++.+|.+.||+|+.|........++.. +...+.++.+.|..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445555 999999999999999999999999999999999999999999999999999999886 78889999999876
Q ss_pred ehh
Q 004150 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 261 ~~~ 263 (285)
T KOG4210|consen 261 DEP 263 (285)
T ss_pred CCC
Confidence 654
No 105
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.56 E-value=0.0066 Score=56.24 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=51.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 129 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Ln-----g~~I~Gr~L~V~ 129 (771)
+.|+|.+++..++-.+|+.+|+.||.|..+.+...- .-|||-|.+++.|..|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 678999999999999999999999999998876542 489999999999999997663 346667666666
Q ss_pred Eeh--hhHHHHHHHHHhh
Q 004150 130 VDQ--ATREYLERYVDKK 145 (771)
Q Consensus 130 ~a~--~~kk~le~~k~kk 145 (771)
+-. .-..|.++..+.+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 543 3456766665543
No 106
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.40 E-value=0.0052 Score=72.42 Aligned_cols=6 Identities=17% Similarity=0.363 Sum_probs=2.3
Q ss_pred EEEcCC
Q 004150 57 VYVGKI 62 (771)
Q Consensus 57 VfVgNL 62 (771)
.|.|+-
T Consensus 590 g~~Gg~ 595 (1102)
T KOG1924|consen 590 GFLGGP 595 (1102)
T ss_pred CCCCCC
Confidence 334433
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.38 E-value=0.0088 Score=67.61 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
...-|-+.+||+++|+.+|..+|+.|+ |..+.+.+ .+|++.|=+||+|.+.+++..||+ .+...++.+.|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 355677899999999999999999997 56655544 589999999999999999999998 78888888899886543
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.016 Score=66.45 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=63.7
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 004150 52 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 124 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte------~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~-Gr 124 (771)
.-...|+|.|+|---.. .-|..+|+++|.+....++.+. .|+++||.|++|.+..+|..|+..|||..|+ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34567899999864332 3677899999999999998884 5669999999999999999999999999997 56
Q ss_pred EEEEE
Q 004150 125 ELMLK 129 (771)
Q Consensus 125 ~L~V~ 129 (771)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 77764
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.21 E-value=0.067 Score=58.81 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 50 AEKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~-vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
...+.+-+.|-+|... ++.+.|..+|..||.|..++++..+ + |-|.|++.+.....+|+.+||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3456788999999874 5667999999999999999998862 2 68999999999999999999999999999999
Q ss_pred EEeh
Q 004150 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.++.
T Consensus 358 ~~Sk 361 (494)
T KOG1456|consen 358 CVSK 361 (494)
T ss_pred eecc
Confidence 8765
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.019 Score=65.40 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=60.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~ 114 (771)
-.+..|||||+||.-++..+|-.||. -||.|..+-|=+|+.=+.++|-|-|+|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45688999999999999999999999 89999999999998889999999999999999999997
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.92 E-value=0.0058 Score=63.35 Aligned_cols=71 Identities=18% Similarity=0.327 Sum_probs=62.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+....+.++|-|++..+...+|..+|..+|.+....+ ..+|+||.|....++..|+..|++..+.|+.|.+
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3455788999999999999999999999999844333 2379999999999999999999999999999998
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.90 E-value=0.017 Score=62.51 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCCCCHHH------HHHHHHhcCCeeEEEEeecC--CCCCCceEE-EEEeCCHHHHHHHHHHhCCceeCCe
Q 004150 54 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP--SNGTPKGFG-FCEFESAEGVLRALRLLNKFNIDGQ 124 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~------L~~lF~~~G~V~s~kiv~d~--~tGk~kGfG-FVeF~~~esA~~Al~~Lng~~I~Gr 124 (771)
..-|||-+||+.+..++ -.++|++||.|..+.+-.-- .+.....+| ||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887765 35799999999988765431 111111233 9999999999999999999999999
Q ss_pred EEEEEEehhhHHHHHHHH
Q 004150 125 ELMLKVDQATREYLERYV 142 (771)
Q Consensus 125 ~L~V~~a~~~kk~le~~k 142 (771)
.|+..+.. -+|--.|.
T Consensus 194 ~lkatYGT--TKYCtsYL 209 (480)
T COG5175 194 VLKATYGT--TKYCTSYL 209 (480)
T ss_pred eEeeecCc--hHHHHHHH
Confidence 99987643 34444444
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.72 E-value=0.043 Score=53.59 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=52.1
Q ss_pred CCCCEEEEcCCC------CCCCH---HHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 52 KPQTKVYVGKIA------PTADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp------~~vte---~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
++..||.|.-+. ..+.+ ..|.+.|..||.+.-++++.+ .-+|+|.+..+|++|+. |+|..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 345667666555 12333 267788889999888877654 68999999999999999 9999999
Q ss_pred CeEEEEEEe
Q 004150 123 GQELMLKVD 131 (771)
Q Consensus 123 Gr~L~V~~a 131 (771)
|+.|.|..-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999653
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.54 E-value=0.013 Score=65.34 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec---CCC--CCC--------ceEEEEEeCCHHHHH
Q 004150 44 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEGVL 110 (771)
Q Consensus 44 ~p~~~~~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d---~~t--Gk~--------kGfGFVeF~~~esA~ 110 (771)
+|......-+.+||.+-|||.+-.-.-|..||+.||.|..++|+.. +.+ |.+ +-|+||+|...+.|.
T Consensus 221 lp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 221 LPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred CCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 4444444567899999999999999999999999999999998875 322 222 458999999999999
Q ss_pred HHHHHhCCce
Q 004150 111 RALRLLNKFN 120 (771)
Q Consensus 111 ~Al~~Lng~~ 120 (771)
.|...|+...
T Consensus 301 KA~e~~~~e~ 310 (484)
T KOG1855|consen 301 KARELLNPEQ 310 (484)
T ss_pred HHHHhhchhh
Confidence 9999776543
No 115
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=0.46 Score=56.70 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.6
Q ss_pred HHHHhhhCCCCC
Q 004150 219 MVEERLKTNPLP 230 (771)
Q Consensus 219 ~~eer~~~~~~~ 230 (771)
+|+-...+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 343333344433
No 116
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.03 E-value=0.069 Score=60.64 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=61.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.+...|-+.+||+.|++.+|.++|+..-.|.. +.++.+ ..|++.|=+||.|++.+.|..||. -|...|+.+-|.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 34567889999999999999999987654444 445555 578899999999999999999997 67778888888774
No 117
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.54 E-value=0.12 Score=57.66 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr-~L~V~ 129 (771)
-+++.++...|||..+++++|+.+|...|......... ++.+.++++.+.+.++|..|+..+|.+.+++. -|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 35677999999999999999999999998776654432 45567999999999999999999999999854 89999
Q ss_pred Eehh
Q 004150 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|+..
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8765
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.51 E-value=0.19 Score=46.31 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-------CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 125 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~-------~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr-~ 125 (771)
.+.|.|-+.|+. ....|...|+.||.|+...-+... .......+-.|.|.++.+|.+||. -||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 455778788887 456788899999999887511110 011223588999999999999999 899999875 5
Q ss_pred EEEEEehh
Q 004150 126 LMLKVDQA 133 (771)
Q Consensus 126 L~V~~a~~ 133 (771)
+-|.+++.
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777754
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.43 E-value=0.18 Score=50.82 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
.-.....|.|.+||++.++.+|+.++...|.|+...+..| |+|.|+|...++..-||+.|....+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3445678999999999999999999999999999999988 79999999999999999989876553
No 120
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.03 E-value=0.15 Score=55.70 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=62.6
Q ss_pred CCCCEEEEcCCCC----CCCH-------HHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCce
Q 004150 52 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (771)
Q Consensus 52 ~~~~tVfVgNLp~----~vte-------~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~ 120 (771)
...+||.|.||=. ..+. ++|..-+.+||.|.++.|.-. -+.|.+-|.|.+.+.|..||..|+|-.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4568899988742 2221 355566889999999987533 456899999999999999999999999
Q ss_pred eCCeEEEEEEehhh
Q 004150 121 IDGQELMLKVDQAT 134 (771)
Q Consensus 121 I~Gr~L~V~~a~~~ 134 (771)
++|++|...+....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998776654
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.02 E-value=0.097 Score=57.93 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=58.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE-EEe
Q 004150 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML-KVD 131 (771)
Q Consensus 56 tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~---~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V-~~a 131 (771)
.|.|.||.+.++.+.|+.||+..|.|..+.|+... .-......|||.|.+..++..|-. |.++.+-++.|.| -+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 78999999999999999999999999999887643 122334689999999999988877 5555554555444 443
Q ss_pred hh
Q 004150 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 88 ~~ 89 (479)
T KOG4676|consen 88 DE 89 (479)
T ss_pred CC
Confidence 33
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.96 E-value=0.23 Score=58.56 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=66.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
......|||-.||..++...+..+|...-.|.. +.|... -+++..+-|||.|..+..+..|+..-+.+.++.+.|.|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344678999999999999999999987777766 555555 588999999999999999999988788888888999986
Q ss_pred E
Q 004150 130 V 130 (771)
Q Consensus 130 ~ 130 (771)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 3
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.39 E-value=0.16 Score=61.27 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 004150 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 127 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~G--r~L~ 127 (771)
...+.+.+|||+|..++....|...|..||.|..+.+-. ...|+||.|++...+..|+..|.|+.|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 455678899999999999999999999999998876532 23699999999999999999999999984 6789
Q ss_pred EEEehhh
Q 004150 128 LKVDQAT 134 (771)
Q Consensus 128 V~~a~~~ 134 (771)
|.|+...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9887654
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.24 E-value=0.21 Score=57.86 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCeeEEEEeec-C--CCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 70 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 70 ~L~~lF~~~G~V~s~kiv~d-~--~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+++.-+++||.|.+|.+.++ . ...-..|..||+|.+.+++.+|+..|+|..++|+.+...|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 44555668999999998876 2 3344567789999999999999999999999999999988765
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.89 E-value=0.58 Score=53.76 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=47.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecC-CCCCCce---EEEEEeCCHHHHHHHHHHh
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLL 116 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V-~s~kiv~d~-~tGk~kG---fGFVeF~~~esA~~Al~~L 116 (771)
.-.+.||||+||+++++..|...|..||.+ +.|-.-... .---++| |.|+.|++..++...|..+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 447889999999999999999999999975 345320100 0112245 9999999998887766544
No 126
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.89 E-value=0.25 Score=40.11 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=40.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHH
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 113 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al 113 (771)
+.|-|.+.++...+. +...|..||.|....+.. ...+.|+.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 567788888777644 455888999999987652 2359999999999999885
No 127
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.71 E-value=0.46 Score=52.03 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=54.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHH-HHHHHhCCceeCCeEEEEEEehhhH
Q 004150 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 135 (771)
Q Consensus 57 VfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~-~Al~~Lng~~I~Gr~L~V~~a~~~k 135 (771)
+.|+.-.+.+++.++..++...-.|.+..|.+. .++.+.| .|.+..+.. .||.++ +.-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lI-------KqSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLI-------KQSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHH-------HhhccccchHHH
Confidence 556666677899999999999988888777665 5667766 677766654 888876 456677788888
Q ss_pred HHHHHH
Q 004150 136 EYLERY 141 (771)
Q Consensus 136 k~le~~ 141 (771)
.++...
T Consensus 416 vLissL 421 (498)
T KOG4849|consen 416 VLISSL 421 (498)
T ss_pred HHHHHH
Confidence 877443
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.47 E-value=0.33 Score=53.78 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~-V~s--~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...|-+.+||+..+-++|..+|.-|.. |.. +.++.+ ..|.+.|-+||.|.+.+.|..|....|.....++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 556889999999999999999998863 333 777777 6899999999999999999999988887777777777754
Q ss_pred e
Q 004150 131 D 131 (771)
Q Consensus 131 a 131 (771)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.41 E-value=0.05 Score=65.24 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=69.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
...|||.|.|+..|.+.|+.+|..+|.+++..+++. ..|+++|.+||.|.+..++.+++.......+.-..+.|.+..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 457999999999999999999999999999998887 5999999999999999999999987777777766677766554
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.31 E-value=0.014 Score=69.61 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=62.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
..+++||.||++.+...+|...|..+|.+..+.+......|.++|+||+.|..+..+.+||....+..++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 3578999999999999999999999998877777655578999999999999999999999855555554333333
No 131
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.93 E-value=0.89 Score=57.26 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.3
Q ss_pred CCCCchhhhcccccccccchh
Q 004150 669 IPKTKEELFSYEINWAVYDKH 689 (771)
Q Consensus 669 ip~~k~~lf~~~i~w~~~d~~ 689 (771)
|..-|..++.-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 344455555545555555443
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.17 E-value=0.29 Score=54.69 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=58.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEeh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 132 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~-V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~-~I~Gr~L~V~~a~ 132 (771)
..+|||||++.++..+|..+|..... +..-.++.. ||+||.+.+...+..|+..|+|. ++.|+.+.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421 112223333 89999999999999999999885 6889999997765
Q ss_pred hhH
Q 004150 133 ATR 135 (771)
Q Consensus 133 ~~k 135 (771)
..+
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 543
No 133
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.97 E-value=0.66 Score=49.90 Aligned_cols=64 Identities=22% Similarity=0.134 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCeeEEEEeecCCCCCC-ceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 69 DFVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 69 ~~L~~lF~~~G~V~s~kiv~d~~tGk~-kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+.+..-+.+||.|..|.|.-.+..... ..--||+|+..++|..|+..|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467788889999999988776533222 3457999999999999999999999999998876543
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.49 E-value=0.73 Score=50.98 Aligned_cols=75 Identities=23% Similarity=0.164 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEehhhHH
Q 004150 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQATRE 136 (771)
Q Consensus 59 VgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~~a~~~kk 136 (771)
|-|--+.+|.+-|..++..+|.|.++.|..- +| --+.|+|++.+.|.+|-..|||..|- =..|+|.++.+++.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4566678999999999999999999988763 33 46899999999999999999999875 36899999887654
Q ss_pred HH
Q 004150 137 YL 138 (771)
Q Consensus 137 ~l 138 (771)
.+
T Consensus 202 nV 203 (494)
T KOG1456|consen 202 NV 203 (494)
T ss_pred ee
Confidence 33
No 135
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.43 E-value=2.7 Score=53.07 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.7
Q ss_pred HHHHHhCC
Q 004150 111 RALRLLNK 118 (771)
Q Consensus 111 ~Al~~Lng 118 (771)
.||..||.
T Consensus 129 ~ALaYLHs 136 (1021)
T PTZ00266 129 HALAYCHN 136 (1021)
T ss_pred HHHHHHHh
Confidence 44444553
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.45 E-value=0.25 Score=59.81 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=65.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.....|||+|||...+++..|+..|..+|.|..+.|-+. .-+....||||.|.+...+-.|+..+.+..|..-.+.+.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 345789999999999999999999999999999887554 2445557999999999999999988888877755555544
Q ss_pred e
Q 004150 131 D 131 (771)
Q Consensus 131 a 131 (771)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.42 E-value=0.38 Score=50.88 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=56.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Ln 117 (771)
..|||.||+..++.+.|..-|+.||.|....++.| ..|++.+=|+|.|...-.+..|++.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999998887777 689999999999999999999998773
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.93 E-value=4.8 Score=43.76 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=47.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004150 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (771)
Q Consensus 56 tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (771)
=|-|-+.|+.-. ..|..+|.+||.|+.... +....|-+|.|.+...|.+||. .+|..|+|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 344556666544 577789999999987643 3444699999999999999998 8999998754
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.25 E-value=0.22 Score=54.46 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=62.2
Q ss_pred CEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCC--CC-CCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 55 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS--NG-TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~---~lF~~~G~V~s~kiv~d~~--tG-k~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
.-+||-+|+..+....+. .+|+.||.|..+.+..++. .+ .+.+-++|+|...++|..||...+|+.++|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 568899999877666443 5788999999998877642 11 11233899999999999999999999999988555
Q ss_pred EEehhhHHHHHHHH
Q 004150 129 KVDQATREYLERYV 142 (771)
Q Consensus 129 ~~a~~~kk~le~~k 142 (771)
.+ .+.+|-..|.
T Consensus 158 ~~--gttkycs~~l 169 (327)
T KOG2068|consen 158 SL--GTTKYCSFYL 169 (327)
T ss_pred hh--CCCcchhHHh
Confidence 43 3334444443
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=85.89 E-value=1.3 Score=49.28 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-c---CCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKV-C---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~-~---G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
....|-+.+||++++..++..+|.. | |.+..+-+++. .+|+..|-+||.|...+.|..||. -|...|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i------- 230 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI------- 230 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH-------
Confidence 3556788999999999999999962 1 34455666665 589999999999999999999997 232222
Q ss_pred EEehhhHHHHHHHHHhhh
Q 004150 129 KVDQATREYLERYVDKKT 146 (771)
Q Consensus 129 ~~a~~~kk~le~~k~kk~ 146 (771)
-+.|++-|+....
T Consensus 231 -----GqRYIElFRSTaa 243 (508)
T KOG1365|consen 231 -----GQRYIELFRSTAA 243 (508)
T ss_pred -----hHHHHHHHHHhHH
Confidence 2568887776553
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=84.74 E-value=2.1 Score=51.98 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=58.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEeh
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQ 132 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~~a~ 132 (771)
.+.++-|.+-+.+...|..+|..||.|.+....++- ..+.|.|.+.++|..|+.+|+|..+- |-+.+|.++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445556666678888999999999999887665653 57899999999999999999998653 6677777765
Q ss_pred h
Q 004150 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 142
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=83.45 E-value=52 Score=35.59 Aligned_cols=38 Identities=8% Similarity=0.131 Sum_probs=29.0
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEee
Q 004150 51 EKPQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRAQ 88 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~------------vte~~L~~lF~~~G~V~s~kiv~ 88 (771)
+..+.|||+.+||-. -++.-|...|..||.|..+.|+.
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 444678888888853 34578999999999999887653
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=83.11 E-value=5.1 Score=39.29 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred CCCCCCEEEEcCCCCCCCH----HHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004150 50 AEKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte----~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (771)
.+++-.||.|.=|..++.. ..+..-++.||.|.++.+.- +.-+.|.|.+..+|-.|+.+++. ..-|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3566778888766665543 35666678999999986532 25789999999999999999977 455778
Q ss_pred EEEEEeh
Q 004150 126 LMLKVDQ 132 (771)
Q Consensus 126 L~V~~a~ 132 (771)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8887754
No 144
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.02 E-value=6.1 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=43.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~---G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~L 116 (771)
+..|+|.|+. .++..+|+.+|..| .....+..+-| .-|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 4579999984 68889999999988 13456677777 36778999999999999754
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.58 E-value=3.9 Score=47.67 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh----------------------------cCCeeEEEEeecCCCCCCceEEEEEeCC
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKV----------------------------CGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~----------------------------~G~V~s~kiv~d~~tGk~kGfGFVeF~~ 105 (771)
.+++-|+||+..-+..+|..|+.. .|.--.+.++.|-.+....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 456667777765555555555542 2333345566666677778999999999
Q ss_pred HHHHHHHHHHhCCceeC----CeEEEEEEehh
Q 004150 106 AEGVLRALRLLNKFNID----GQELMLKVDQA 133 (771)
Q Consensus 106 ~esA~~Al~~Lng~~I~----Gr~L~V~~a~~ 133 (771)
++.+..+..++||..+. .+.+.+.||.-
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 99999999999999764 45566666654
No 146
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.40 E-value=1.4 Score=44.62 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEee---cCCCCC--CceEEEEEeCCHHHHHHHHHHhCCceeC---
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID--- 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~-~G~V~s~kiv~---d~~tGk--~kGfGFVeF~~~esA~~Al~~Lng~~I~--- 122 (771)
...+.|.|.+||+++|++.+...++. +|....|..+. +..+.+ ..+-|||.|.+.+.+..-+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34678999999999999999987776 66664444332 111212 2356899999999999999999997663
Q ss_pred C--eEEEEEEehh
Q 004150 123 G--QELMLKVDQA 133 (771)
Q Consensus 123 G--r~L~V~~a~~ 133 (771)
| ....|.++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3456777766
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=78.89 E-value=1.5 Score=47.78 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...+++|+|++...+....+..++..+|.+..+.+........+++|+++.|...+.+..|+.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45789999999999999999999999998888877665568899999999999999999999854445665655554443
Q ss_pred h
Q 004150 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 148
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=78.49 E-value=4.9 Score=41.06 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEehh
Q 004150 68 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQA 133 (771)
Q Consensus 68 e~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V~~a~~ 133 (771)
...|+.+|..|+.+..|..... -+-..|.|.+.+.|..|...|+ +..++|..|.|-++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4689999999999999987664 2457899999999999999999 9999999999988754
No 149
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=78.43 E-value=3 Score=30.50 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004150 727 KASQMLELLQTILDDEAEMFVLKM 750 (771)
Q Consensus 727 ~p~~l~~~l~~~lde~a~~fv~kl 750 (771)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346799999999999999999764
No 150
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.19 E-value=2.1 Score=53.31 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=22.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEE
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 84 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~ 84 (771)
..+++|-.+-..+....|+.+.+.||...+.
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 4567776666777788888888888765544
No 151
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=76.01 E-value=1.6 Score=46.32 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred hcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 77 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 77 ~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+||.|..+.|..+. .--..|-.||.|...++|.+|+..||+-.+.|++|...+..-
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 89999998776652 334567889999999999999999999999999999887654
No 152
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=74.97 E-value=7.6 Score=34.81 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=39.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC
Q 004150 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (771)
Q Consensus 57 VfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng 118 (771)
||--..|...-..+|.++|+.||.|. +..+.+ .-|||...+.+.|..++..+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44434899999999999999999763 444455 4799999999999999988853
No 153
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=73.62 E-value=18 Score=33.29 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=55.7
Q ss_pred HhhhhhhhHHHHHHhhcCcchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004150 691 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 764 (771)
Q Consensus 691 ~~~~i~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWrllife~~~~~~g 764 (771)
+.+-||--|.+|...+=.+-|| .+-+||+=.+....++..++.+|...+|.=...++...-....|...+.+.|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999888666555 4889999999999999999999999999777777777777777777777665
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=71.50 E-value=18 Score=31.18 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=37.6
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004150 56 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 56 tVfVg-NLp~~vte~~L~~lF~~~G~-----V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
++||. +=-..++...|..+|...+. |-.+.+.. .|.||+-... .+..++..|++..+.|++|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 22346777788888876653 44555544 3899887654 6788999999999999999997
Q ss_pred Ee
Q 004150 130 VD 131 (771)
Q Consensus 130 ~a 131 (771)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=69.95 E-value=36 Score=31.96 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=46.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 55 TKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~L~~lF~~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
..+-+...|+-++.+.|..+.+.+- .|..++++++. .-++....+.|.+...|..-...+||..++
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344445555555567766655553 56677888762 235667899999999999999999999765
No 156
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=68.99 E-value=3.2 Score=47.47 Aligned_cols=73 Identities=7% Similarity=-0.001 Sum_probs=57.8
Q ss_pred CEEEEcCCCCCCCH-HHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004150 55 TKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 55 ~tVfVgNLp~~vte-~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+.+-+.-+++.++. ..|...|..||.|..|.+-.. --.|.|+|.+.-+|-.|.. .++..|+++.|+|.|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 44445555666554 589999999999999976443 2578999999999988877 899999999999999765
Q ss_pred h
Q 004150 134 T 134 (771)
Q Consensus 134 ~ 134 (771)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 157
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=63.31 E-value=1.6e+02 Score=35.77 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=5.9
Q ss_pred hcHHHHHHHHHHHHH
Q 004150 415 EDLADEVREEEEIAV 429 (771)
Q Consensus 415 ~D~~DR~rE~eE~~e 429 (771)
.|+.-++.|.-|+++
T Consensus 349 ~deerkK~e~ke~ea 363 (811)
T KOG4364|consen 349 SDEERKKLESKEVEA 363 (811)
T ss_pred hhhhhhhhhhhHHHH
Confidence 334444444333333
No 158
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=61.37 E-value=20 Score=43.50 Aligned_cols=6 Identities=33% Similarity=1.132 Sum_probs=2.4
Q ss_pred HHhhcC
Q 004150 703 ITEFLG 708 (771)
Q Consensus 703 i~e~lG 708 (771)
+++|+|
T Consensus 699 ~~~y~G 704 (830)
T KOG1923|consen 699 VVEYFG 704 (830)
T ss_pred HhHhhC
Confidence 334444
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=61.16 E-value=2.4e+02 Score=34.29 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=11.5
Q ss_pred HHhhhhhcHHHHHHHHHHHHHHHH
Q 004150 409 RIREKEEDLADEVREEEEIAVAKR 432 (771)
Q Consensus 409 r~rE~e~D~~DR~rE~eE~~e~~~ 432 (771)
|.+++|+-++-.++.-++.-.+.+
T Consensus 335 R~k~~Erkee~~rk~deerkK~e~ 358 (811)
T KOG4364|consen 335 RAKIMERKEEKSRKSDEERKKLES 358 (811)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Confidence 444555554444444444444433
No 160
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=57.54 E-value=21 Score=41.46 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.8
Q ss_pred ccCCCChHHHh
Q 004150 556 VPIDYSTEELQ 566 (771)
Q Consensus 556 vPl~y~~ee~~ 566 (771)
||-|-.+|-+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 33344454443
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=55.29 E-value=26 Score=41.14 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH--hcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 004150 52 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 127 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~L~~lF~--~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng--~~I~Gr~L~ 127 (771)
...|.|.+.-||..+..+.++.||. .|-.+.+|.+..+ .-=||+|++..+|..|...|.. .+|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4468899999999999999999997 5889999987765 2458999999999999876632 245566654
Q ss_pred E
Q 004150 128 L 128 (771)
Q Consensus 128 V 128 (771)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 162
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=54.19 E-value=5.7 Score=48.19 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=21.5
Q ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhhHHHHHHHHHhhhh
Q 004150 93 GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTE 147 (771)
Q Consensus 93 Gk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~kk~le~~k~kk~e 147 (771)
...-.||||.-...- -+.+|..+|-...+ + +.|. +.....+--+|.+-+..
T Consensus 155 k~~DtygfVD~dvff-Qls~~~g~hp~vgD-~-V~ve-a~Ynpsmpfkwnaqriq 205 (1194)
T KOG4246|consen 155 KQTDTYGFVDQDVFF-QLSKMQGLHPSVGD-A-VNVE-ADYNPSMPFKWNAQRIQ 205 (1194)
T ss_pred hhccccccccHHHHH-HHHHHhcCCCcccc-c-eeee-cccCCCCCccccHHHHH
Confidence 334468888532222 23444444433332 2 3332 22222344455555443
No 163
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=50.31 E-value=19 Score=43.15 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=51.9
Q ss_pred hhhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004150 692 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 755 (771)
Q Consensus 692 ~~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~klWrlli 755 (771)
..+++--+.....+|||-.-+.+++.|+..|........=+.+|.-||.++...||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3688888999999999998666666666666655544455559999999999999999999886
No 164
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=48.36 E-value=5.6 Score=34.24 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 004150 726 VKASQMLELLQTILDDEAEMFVLKM 750 (771)
Q Consensus 726 ~~p~~l~~~l~~~lde~a~~fv~kl 750 (771)
.+-..||++|..||..+|+.||...
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999753
No 165
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=46.99 E-value=18 Score=42.40 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=6.7
Q ss_pred EEeCCHHHHHHHH
Q 004150 101 CEFESAEGVLRAL 113 (771)
Q Consensus 101 VeF~~~esA~~Al 113 (771)
++.-+-.+|..||
T Consensus 325 ~ec~sW~~avaaL 337 (582)
T PF03276_consen 325 NECGSWASAVAAL 337 (582)
T ss_pred cccccHHHHHHHH
Confidence 3444555555555
No 166
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=46.52 E-value=28 Score=37.34 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=45.5
Q ss_pred CCCCEEEEcCCCCCCCHHH-H--HHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCcee
Q 004150 52 KPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~-L--~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I 121 (771)
+.....|++++-..+...- | ...|+.|-.+...+++.+ ..+...+++|+.|........+-..-++..+
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki 165 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKI 165 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccc
Confidence 4455667777666655543 3 677888888888888887 4788889999998765554444443333333
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.95 E-value=70 Score=36.91 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeecCCCCCCc-eEEEEEeCCHHHHHHHHHHhCCceeC
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPK-GFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~-G~V~s~kiv~d~~tGk~k-GfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
+.+.|+|-.+|-.++-.+|..|+..| -.|..+++++| |.+. -...+.|.+..+|..-...+||..++
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999998865 46888999986 3333 45799999999999999999998765
No 168
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=44.90 E-value=3.4 Score=48.04 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr 124 (771)
..|+|||.||+++++-..|..+|..+-.+..+.+..+........+++|+|.-.....-|+-+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 357899999999999999999999987777776655444445567899999988888888888888765433
No 169
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=44.77 E-value=35 Score=30.79 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=35.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCC
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~ 105 (771)
..-|||||++..+.+.-...+...++.-.-+-+..+ + ...||.|.++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~-neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--N-NEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--C-CCCCEEEEEeCC
Confidence 445999999999998888888877765544444443 2 388999998743
No 170
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=44.69 E-value=1.2e+02 Score=26.05 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004150 65 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 65 ~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
.++-.+|+..|..|+- ..+ ..+ .| | -||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--Eec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5667899999999972 222 233 12 2 379999999999999999999988877665
No 171
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.29 E-value=1.1e+02 Score=36.58 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=57.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeecC----------CCCC---------------------
Q 004150 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 94 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~L~~lF~~~----G~V~s~kiv~d~----------~tGk--------------------- 94 (771)
.....+|-|.|+.+. +...+|.-+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455778999999985 5566888888855 589998765321 2222
Q ss_pred ----------------CceEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 004150 95 ----------------PKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (771)
Q Consensus 95 ----------------~kGfGFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~ 130 (771)
-.-|+.|+|.+...|......++|+++.. ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12378899999999999999999999874 3444433
No 172
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=39.65 E-value=32 Score=39.74 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=45.1
Q ss_pred hhhhhhHHHHHHhhcCcchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004150 693 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 755 (771)
Q Consensus 693 ~~i~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~lde~a~~fv~klWrlli 755 (771)
+.|+-|...-..=+---.-..|..||+-.|+..+ =+..++..|..||-+++..||.||+..|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4566666654333333333358899999998644 34667799999999999999999986653
No 173
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=38.67 E-value=2.1e+02 Score=31.26 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=35.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHH
Q 004150 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAE 107 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~e 107 (771)
-.+-||++|||.++...+|+.-+...|.+-- .+.+ ..+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPM-SISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCce-eEee----ecCCcceeEecCCcc
Confidence 3566999999999999999999988775421 1111 123467899998754
No 174
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=35.26 E-value=44 Score=44.70 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.4
Q ss_pred HHHhcC
Q 004150 74 VLKVCG 79 (771)
Q Consensus 74 lF~~~G 79 (771)
|..+.|
T Consensus 1749 LHDR~G 1754 (2039)
T PRK15319 1749 LYDREG 1754 (2039)
T ss_pred HHHcCC
Confidence 333444
No 175
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.23 E-value=32 Score=35.17 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCCCCCHH-----HHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 004150 53 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 126 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~-----~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr-~L 126 (771)
-.+++++.+|+..+..+ ....+|..|-......+.+. .++--|.|.++..|..|.-.+++..+.|+ .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 35668888888765543 44556665554444444332 24556899999999999999999999988 67
Q ss_pred EEEEehh
Q 004150 127 MLKVDQA 133 (771)
Q Consensus 127 ~V~~a~~ 133 (771)
..-+++.
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7666654
No 176
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=33.20 E-value=9.8 Score=39.80 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=62.9
Q ss_pred CCCCEEEEcC----CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004150 52 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 52 ~~~~tVfVgN----Lp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
....+++.|+ |...++...+...|+..|.+..+++.++ .+|.+..|+|++|.-....-.++....+..+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3457888888 7888999999999999999999998888 5799999999999998888888887777765544444
Q ss_pred E
Q 004150 128 L 128 (771)
Q Consensus 128 V 128 (771)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 4
No 177
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=32.57 E-value=86 Score=27.92 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=38.7
Q ss_pred HHHHHhhcCcchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHHHHHHHH
Q 004150 700 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVL 748 (771)
Q Consensus 700 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~p~~l~~~l~~~lde~a~~fv~ 748 (771)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=+.
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Ll 59 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLL 59 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHH
Confidence 578999999 58889999999997543 6678999999999987765433
No 178
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=32.07 E-value=31 Score=33.25 Aligned_cols=20 Identities=50% Similarity=0.863 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004150 356 REREREKERQYEKEKEKERER 376 (771)
Q Consensus 356 RER~r~~~r~~ekerere~er 376 (771)
||..+++.|++ +||||.+|+
T Consensus 27 RetSrERSRdR-rEReRsRE~ 46 (146)
T PF11671_consen 27 RETSRERSRDR-RERERSRER 46 (146)
T ss_pred HHhhhhhhhhh-hhhhhhccc
Confidence 44444334444 444444443
No 179
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=31.23 E-value=4.4e+02 Score=27.43 Aligned_cols=73 Identities=33% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004150 309 LKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKE 381 (771)
Q Consensus 309 ~ere~ere~~r~~r~rerer~r~~r~~~~~~re~E~~y~er~r~we~RER~r~~~r~~ekerere~er~r~~e 381 (771)
..+..+++..+..+..++.....++...+...+.+++-..+++.-..+++..+.....+..+.++.++....+
T Consensus 99 ~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~keeekr~~eE 171 (216)
T PF11600_consen 99 EEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRKKEEEKRKKEE 171 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
No 180
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.97 E-value=42 Score=36.19 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=44.6
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 004150 698 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 754 (771)
Q Consensus 698 wi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-lde~--a~~fv~klWrll 754 (771)
-|+.....|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 34555677999999999999999999999998888777666 5432 457999999654
No 181
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.16 E-value=1.5e+02 Score=25.24 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 004150 697 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 752 (771)
Q Consensus 697 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~lde~a~~fv~klWr 752 (771)
+++..-+.-++....+.+..++-..+....+|..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777778888888999999999887899999987 8888876 666775
No 182
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.43 E-value=89 Score=28.88 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=35.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCH
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 106 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~ 106 (771)
..-||||+++..+.+.-...+...|+.-.-+-+.. +....||.|.++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~---~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWA---TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEc---CCCCCCcEEEecCCC
Confidence 44599999999998887777777776533333333 234559999988753
No 183
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=26.92 E-value=1.1e+02 Score=32.74 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=48.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEe-CCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF-ESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF-~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..-||||+|-...--...-..+..+-.-.+|.++.-......-|||.... .+.++...+|.++.+..+.-..+.|.-+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 56799999988765544444444433334455554322223345663333 45666667777676665555566666666
Q ss_pred hhHHHH
Q 004150 133 ATREYL 138 (771)
Q Consensus 133 ~~kk~l 138 (771)
.+++.+
T Consensus 117 GcQdi~ 122 (299)
T KOG4840|consen 117 GCQDIM 122 (299)
T ss_pred cchHHH
Confidence 666544
No 184
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.90 E-value=1.1e+02 Score=34.80 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=44.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHHH
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~~ 115 (771)
.+-|-|.+.|...-..+|..+|+.|| .-..++++-+ .++|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 35577788888887888999999886 4456666666 5899999999999999984
No 185
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=26.74 E-value=1.5e+02 Score=26.73 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=46.5
Q ss_pred hhhhhhhHHHHHHhh--cCc---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 004150 692 HERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 748 (771)
Q Consensus 692 ~~~i~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~ 748 (771)
.+.|+|||..|+.|| ||. ..+.|=+|+++..-.+..|..|-+-+..||-=.+-.||.
T Consensus 6 ~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 6 REQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 467999999999986 564 477899999999988888888888888888767776664
No 186
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=26.59 E-value=24 Score=34.73 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.7
Q ss_pred CccccCccCCCCCCcchhc
Q 004150 530 KRTAVPSVFHVEDDDDADK 548 (771)
Q Consensus 530 kr~~v~~vf~~~ddee~~~ 548 (771)
+..+|+.|||.+||+|..+
T Consensus 88 ~~~~va~~Fn~d~d~e~eE 106 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPEE 106 (150)
T ss_pred CcchhhhhhccccccChhh
Confidence 4678999999987776443
No 187
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=26.32 E-value=1.6e+02 Score=34.63 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=9.2
Q ss_pred CCCHHHHHHHHHh
Q 004150 65 TADSDFVLSVLKV 77 (771)
Q Consensus 65 ~vte~~L~~lF~~ 77 (771)
.+....|..+|..
T Consensus 317 ~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 317 SVDTARLEHLFES 329 (817)
T ss_pred eecHHHHHHHHHH
Confidence 4556688888874
No 188
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=26.05 E-value=59 Score=41.49 Aligned_cols=18 Identities=44% Similarity=0.953 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 004150 2 VRPAFPPRPPGPVGVLPS 19 (771)
Q Consensus 2 v~P~~Pp~PPgp~~~~P~ 19 (771)
++|++||+||+|+|.-|.
T Consensus 4 lppg~ppppppppg~epp 21 (2365)
T COG5178 4 LPPGNPPPPPPPPGFEPP 21 (2365)
T ss_pred CCCCCCcccccCCCCCCC
Confidence 578888888877775443
No 189
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=25.49 E-value=2.1e+02 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 004150 729 SQMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 767 (771)
Q Consensus 729 ~~l~~~l~~~lde~--a~~fv~klWrllife~~~~~~gl~~ 767 (771)
++++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 51 ~~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 51 DYQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444332 4679999999999999999887664
No 190
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=23.66 E-value=97 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCCceEEEEEeCCHHHHHHHHH
Q 004150 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~L~~lF~~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~Al~ 114 (771)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4557889999999999999999999999999777665553333344455544444444444443
No 191
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=22.05 E-value=68 Score=35.57 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=11.6
Q ss_pred CHHHHHHHHHhcCCeeEEE
Q 004150 67 DSDFVLSVLKVCGTVKSWK 85 (771)
Q Consensus 67 te~~L~~lF~~~G~V~s~k 85 (771)
-...|-+||.+.-.|.-|.
T Consensus 82 yhevideIyyqVkHvEPWe 100 (453)
T KOG2888|consen 82 YHEVIDEIYYQVKHVEPWE 100 (453)
T ss_pred HHHHHHHHHHHHhccCchh
Confidence 3456667777666665554
No 192
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.70 E-value=1.3e+02 Score=27.22 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCCceEEEEEeCC
Q 004150 54 QTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~L~~lF~~-~G~V~s~kiv~d~~tGk~kGfGFVeF~~ 105 (771)
..-||||+++..+.+.-...+... ++.- ++.++.. +....||.|-++..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 445999999998887766666665 3332 3333332 33466899988765
No 193
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=3.2e+02 Score=29.39 Aligned_cols=8 Identities=63% Similarity=0.630 Sum_probs=5.2
Q ss_pred ChHHHhhh
Q 004150 561 STEELQAA 568 (771)
Q Consensus 561 ~~ee~~~~ 568 (771)
+.+++.||
T Consensus 258 S~eEl~AV 265 (299)
T KOG3054|consen 258 SMEELAAV 265 (299)
T ss_pred cHHHHHHH
Confidence 77776544
Done!