BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004159
(771 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
Length = 766
Score = 1408 bits (3645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/770 (90%), Positives = 734/770 (95%), Gaps = 4/770 (0%)
Query: 1 MGAAILPDLGAEILIPVCAVIGIAFALVQWVLVSNIKLSPARDXXXXXXXXXXXXXXCTD 60
MGAAILPDLG EILIPVCAVIGIAFAL QW+LVS +KLS RD D
Sbjct: 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGY----ND 56
Query: 61 YLIEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEG 120
YLIEEEEG+NDHNVV+KCAEIQ+AISEGATSFLFTEY+YVG+FMVAFAILIFLFLGSVEG
Sbjct: 57 YLIEEEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEG 116
Query: 121 FSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTLEAR 180
FST QAC+YD K CKPALATA FSTVSFLLGG+TS+VSGFLGMKIAT+ANARTTLEAR
Sbjct: 117 FSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEAR 176
Query: 181 KGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSS 240
KGVGKAFI AFRSGAVMGFLLAANGLLVL+IAINLFK+YYGDDW GLFEAITGYGLGGSS
Sbjct: 177 KGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSS 236
Query: 241 MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLF 300
MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLF
Sbjct: 237 MALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLF 296
Query: 301 GSYAESSCAALVVASISSFGINHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKE 360
GSYAESSCAALVVASISSFG+NHELTAMLYPL++SS GI+VCL+TTLFATD FEIKAVKE
Sbjct: 297 GSYAESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKE 356
Query: 361 IEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGL 420
IEP+LKKQL+ISTVLMT+ +A+VS++ALP+SFTIFNFG QK VK+WQLFLCVAVGLWAGL
Sbjct: 357 IEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGL 416
Query: 421 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF 480
IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSF+F
Sbjct: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTF 476
Query: 481 AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTT 540
AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTT
Sbjct: 477 AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTT 536
Query: 541 AAIGKGFAIGSAALVSLALFGAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKS 600
AAIGKGFAIGSAALVSLALFGAFVSRA+I+TVDVLTPKVFIGLIVGAMLPYWFSAMTMKS
Sbjct: 537 AAIGKGFAIGSAALVSLALFGAFVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKS 596
Query: 601 VGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIV 660
VGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPL+V
Sbjct: 597 VGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVV 656
Query: 661 GIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPH 720
GI FGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHAR+LGPKGSD H
Sbjct: 657 GILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDCH 716
Query: 721 KAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIW 770
KAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKI+
Sbjct: 717 KAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 766
>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase With Metal Ions In
Active Site
pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
Membrane Integral Pyrophosphatase At 4 A In Complex With
Phosphate And Magnesium
Length = 735
Score = 486 bits (1250), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/728 (41%), Positives = 426/728 (58%), Gaps = 86/728 (11%)
Query: 77 KCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMC 136
+ EI S I GA SFL E + +F VA I I L + F+T
Sbjct: 43 RMKEISSYIRSGADSFLAHETK--AIFKVAIVIAILLMI-----FTTWQ----------- 84
Query: 137 KPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTLEAR--KGVGKAFIVAFRSG 194
+ V+FLLG + S +G +GMK+AT AN R AR K +G A VA++ G
Sbjct: 85 ---------TGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGG 135
Query: 195 AVMGFLLAANGLLVLFIAINLFKLYYGD--------DWSGLF-----EAITGYGLGGSSM 241
+VMG + LL L + +F + G +W G+ ++GY LG S +
Sbjct: 136 SVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSII 195
Query: 242 ALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFG 301
A+F RVGGG+YTKAAD+ ADLVGK E N+PEDDPRNPA IADNVGDNVGD+AG+G+DL
Sbjct: 196 AMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLE 255
Query: 302 SYAESSCAALVVAS------ISSFGIN--HE-----LTAML-YPLLISSAGIIVCLITTL 347
S+ + +++++AS + G N H+ + A++ YP+ + G+ ++ L
Sbjct: 256 SFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGIL 315
Query: 348 FATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTI----FNFGSQKVV 403
+ + K + L L S +L V A +++ L + F FG+ +
Sbjct: 316 Y---VIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA---I 369
Query: 404 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSV 463
W +G+++G++IGF EYYTS Y P Q + S G + GL+LG KSV
Sbjct: 370 SPW---FSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSV 426
Query: 464 IIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMS 523
P + + I + FA +YG+A+AALGMLS +AT +++D+YGPI+DNAGGI+EM +
Sbjct: 427 FPPTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELD 486
Query: 524 HRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAISTVDVLTP------ 577
+R+ TD LDA GNTTAAIGKGFAIGSA +L+LF +++ + IS D+ P
Sbjct: 487 PEVRKITDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYM-FSQISPSDIGKPPSLVLL 545
Query: 578 ------KVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDY 631
+V G ++GA + Y+FS + +V AA+KMV+E+RRQ IPGL+EG AKPDY
Sbjct: 546 LNMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDY 605
Query: 632 ATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTG 691
C++I++D ++K+M P + +LTPL+ G G E + GVL G+++SG +AI +N+G
Sbjct: 606 NRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAILTANSG 665
Query: 692 GAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVE 751
GAWDNAKKY+EAG E KGS+PHKA VIGDT+GDPLKDT GPSL+ILIK+M+V
Sbjct: 666 GAWDNAKKYLEAGNLEGYG----KGSEPHKALVIGDTVGDPLKDTVGPSLDILIKIMSVV 721
Query: 752 SLVFAPFF 759
S++ F
Sbjct: 722 SVIAVSIF 729
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALG 459
+W +F+ + GL+ VT + AY DV ++ R G+ T+ F +G
Sbjct: 45 SWPVFITLITGLY------LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIG 98
Query: 460 YKSVIIPIFAIAVSIFVSFSFAAMYGIAVAA 490
Y +IPI +A ++ + M G+AVAA
Sbjct: 99 YGK-LIPIGPLANTLVTLEALCGMLGLAVAA 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,504,638
Number of Sequences: 62578
Number of extensions: 803645
Number of successful extensions: 1855
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1840
Number of HSP's gapped (non-prelim): 11
length of query: 771
length of database: 14,973,337
effective HSP length: 106
effective length of query: 665
effective length of database: 8,340,069
effective search space: 5546145885
effective search space used: 5546145885
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)