Query 004159
Match_columns 771
No_of_seqs 166 out of 730
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 18:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 3E-261 7E-266 2174.4 75.3 764 4-770 2-765 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 1E-254 2E-259 2109.9 69.4 693 12-765 4-696 (697)
3 PLN02277 H(+) -translocating i 100.0 5E-250 1E-254 2082.7 66.6 686 18-760 2-730 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 6E-247 1E-251 2060.8 47.3 669 19-756 1-682 (682)
5 PRK00733 hppA membrane-bound p 100.0 2E-243 5E-248 2016.9 65.6 649 65-762 4-663 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 2E-238 4E-243 1908.8 60.4 680 10-761 4-701 (703)
7 COG3104 PTR2 Dipeptide/tripept 91.2 4.8 0.0001 47.1 15.0 77 249-353 132-209 (498)
8 PF03030 H_PPase: Inorganic H+ 77.9 13 0.00029 45.1 10.4 148 286-442 210-359 (682)
9 PRK00733 hppA membrane-bound p 61.1 86 0.0019 38.4 12.1 144 575-743 53-208 (666)
10 PF12670 DUF3792: Protein of u 59.8 1.5E+02 0.0032 28.2 11.3 102 302-421 14-115 (116)
11 PF06800 Sugar_transport: Suga 57.7 1.4E+02 0.003 32.8 12.1 100 334-459 105-206 (269)
12 TIGR00833 actII Transport prot 56.9 97 0.0021 38.9 12.2 93 461-564 198-296 (910)
13 COG3808 OVP1 Inorganic pyropho 54.9 1.8E+02 0.0039 35.1 12.9 101 364-505 51-151 (703)
14 PRK11677 hypothetical protein; 51.0 19 0.0004 35.6 3.8 33 409-441 3-35 (134)
15 PLN02255 H(+) -translocating i 49.3 5E+02 0.011 32.6 15.9 143 577-743 139-294 (765)
16 PF02355 SecD_SecF: Protein ex 46.0 1E+02 0.0023 31.7 8.5 74 607-688 103-179 (189)
17 PF00344 SecY: SecY translocas 42.5 68 0.0015 35.6 7.0 115 546-664 201-323 (346)
18 TIGR01104 V_PPase vacuolar-typ 37.1 2.1E+02 0.0045 35.4 10.3 141 146-300 511-675 (697)
19 PF08006 DUF1700: Protein of u 36.7 4.5E+02 0.0098 26.3 12.1 19 197-215 142-160 (181)
20 TIGR00921 2A067 The (Largely A 36.0 2.5E+02 0.0054 33.7 10.9 90 463-563 220-310 (719)
21 PRK01844 hypothetical protein; 34.8 86 0.0019 28.2 5.0 24 12-35 7-30 (72)
22 PTZ00219 Sec61 alpha subunit; 33.1 1E+02 0.0022 36.2 6.8 71 588-661 371-441 (474)
23 TIGR00966 3a0501s07 protein-ex 31.9 1.4E+02 0.0031 31.6 7.2 70 607-687 170-245 (246)
24 COG0385 Predicted Na+-dependen 31.2 4.8E+02 0.01 29.5 11.2 78 360-442 115-200 (319)
25 PF12331 DUF3636: Protein of u 29.3 38 0.00083 34.1 2.2 22 491-512 49-70 (149)
26 COG4214 XylH ABC-type xylose t 29.1 2.6E+02 0.0055 32.3 8.7 112 76-197 218-338 (394)
27 PRK08382 putative monovalent c 28.3 1.9E+02 0.0041 30.5 7.2 73 519-597 1-76 (201)
28 PF12263 DUF3611: Protein of u 28.2 3.3E+02 0.0071 28.4 8.7 85 405-504 19-133 (183)
29 PRK01610 putative voltage-gate 27.9 4.1E+02 0.0088 30.5 10.3 21 572-592 319-339 (418)
30 PF11712 Vma12: Endoplasmic re 27.7 1.5E+02 0.0032 29.0 6.0 27 360-386 70-98 (142)
31 PF00957 Synaptobrevin: Synapt 27.3 1.7E+02 0.0037 26.0 5.8 40 75-114 40-83 (89)
32 PF03806 ABG_transport: AbgT p 26.3 1.2E+03 0.026 28.1 15.3 97 364-478 252-354 (502)
33 PRK00523 hypothetical protein; 26.2 1.3E+02 0.0029 27.1 4.7 24 12-35 8-31 (72)
34 PF15176 LRR19-TM: Leucine-ric 26.2 66 0.0014 30.7 3.0 36 405-440 16-58 (102)
35 PF03672 UPF0154: Uncharacteri 25.6 1.1E+02 0.0025 26.9 4.2 32 579-624 3-34 (64)
36 COG2443 Sss1 Preprotein transl 25.6 67 0.0015 28.4 2.8 34 605-638 4-37 (65)
37 COG0201 SecY Preprotein transl 25.5 4.1E+02 0.0088 31.2 9.8 121 532-662 263-391 (436)
38 PF14362 DUF4407: Domain of un 25.3 3.2E+02 0.007 29.5 8.6 27 409-435 46-72 (301)
39 TIGR00400 mgtE Mg2+ transporte 24.5 5.2E+02 0.011 29.9 10.5 94 327-429 316-415 (449)
40 TIGR03434 ADOP Acidobacterial 23.5 4.8E+02 0.01 31.6 10.4 86 75-173 705-796 (803)
41 TIGR00967 3a0501s007 preprotei 23.5 7.3E+02 0.016 28.6 11.3 108 548-662 257-372 (410)
42 PF06295 DUF1043: Protein of u 23.5 77 0.0017 30.7 3.1 25 412-436 2-26 (128)
43 PF04911 ATP-synt_J: ATP synth 22.9 34 0.00074 29.2 0.5 7 273-279 39-45 (54)
44 COG3105 Uncharacterized protei 22.9 1E+02 0.0023 30.6 3.8 30 407-436 6-35 (138)
45 COG5336 Uncharacterized protei 21.9 1.1E+02 0.0024 29.7 3.7 22 408-429 48-69 (116)
46 PRK13022 secF preprotein trans 21.9 5.8E+02 0.013 27.9 9.8 74 608-691 200-278 (289)
47 PF00110 wnt: wnt family; Int 21.8 87 0.0019 34.7 3.5 23 597-619 22-44 (310)
48 PF03023 MVIN: MviN-like prote 20.9 8E+02 0.017 28.1 11.0 34 407-442 323-356 (451)
49 TIGR00245 conserved hypothetic 20.6 97 0.0021 33.4 3.4 63 580-653 123-185 (248)
50 PRK00523 hypothetical protein; 20.6 1.6E+02 0.0035 26.6 4.2 33 579-625 11-43 (72)
51 KOG0793 Protein tyrosine phosp 20.5 43 0.00093 41.1 0.9 16 269-284 794-809 (1004)
52 PF03672 UPF0154: Uncharacteri 20.5 1.3E+02 0.0029 26.5 3.6 21 15-35 3-23 (64)
53 PRK06696 uridine kinase; Valid 20.5 39 0.00085 34.7 0.5 17 260-282 203-219 (223)
54 PF11239 DUF3040: Protein of u 20.3 1.5E+02 0.0032 26.5 4.0 17 606-622 8-25 (82)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=3e-261 Score=2174.37 Aligned_cols=764 Identities=91% Similarity=1.359 Sum_probs=701.0
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCCCCCCCCCCCCCCcchhhhhccCCcccccHHHHHHHH
Q 004159 4 AILPDLGAEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQS 83 (771)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~gl~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~~Ia~ 83 (771)
.++||.++..+++++++++++||+++++||+|++.+++..++++.++ +.++..|++.|+++|+++++.++|||||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~ 78 (765)
T PLN02255 2 AILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGG---GGGGYGDYLIEEEEGLNDHNVVAKCAEIQN 78 (765)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccc---ccccccccccccccCccccccCHHHHHHHH
Confidence 57899999999999999999999999999999998655433322222 245668888888888888888999999999
Q ss_pred HHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhh
Q 004159 84 AISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFL 163 (771)
Q Consensus 84 ~I~eGA~afL~~qyk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~i 163 (771)
+|||||++||+||||++++|++++++++++++++.++.+.+++++.++.++.+..+....++++++|++|++||.++||+
T Consensus 79 ~I~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~i 158 (765)
T PLN02255 79 AISEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFL 158 (765)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997766654334445555666666667777777788999999999999999999
Q ss_pred hhhhhhhhhHhhHHHHhcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhHHhhchhhHHHHH
Q 004159 164 GMKIATFANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSSMAL 243 (771)
Q Consensus 164 GM~vat~aNvRta~AA~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~l~gfg~GaS~iAL 243 (771)
|||+|||+|+|||+|||+++++||++|||+|+||||+|+|++|++++++|++|..+++++..+.+++++||+||+|++||
T Consensus 159 GM~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAl 238 (765)
T PLN02255 159 GMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMAL 238 (765)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998754544444457899999999999999
Q ss_pred HHHHhcccccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhccccc
Q 004159 244 FGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINH 323 (771)
Q Consensus 244 FaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~ 323 (771)
|+|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||+++++|+|+|+....++.+.
T Consensus 239 FaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~ 318 (765)
T PLN02255 239 FGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINH 318 (765)
T ss_pred HHHHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999632122222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCccccc
Q 004159 324 ELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVV 403 (771)
Q Consensus 324 ~~~~v~~PLli~a~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~ 403 (771)
++..+.|||+++++||++|++|++++|.+++.++++|++++||+|+|+|++++++++|++++|++|+.+.+..+++.+..
T Consensus 319 ~~~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~ 398 (765)
T PLN02255 319 DFTAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVV 398 (765)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccc
Confidence 33458999999999999999999999866677777799999999999999999999999999999865433212222334
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004159 404 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAM 483 (771)
Q Consensus 404 ~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~Gl 483 (771)
.+|++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|++++++||+++|+
T Consensus 399 ~~~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~gl 478 (765)
T PLN02255 399 KNWQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAAM 478 (765)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHH
Q 004159 484 YGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAF 563 (771)
Q Consensus 484 yGiAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTaAi~KGfAIGSAaL~aLaLf~ay 563 (771)
||+|+|++|||||++++|++|+||||+||||||||||+|||||||+||+||++||||||+|||||||||+|+||+||++|
T Consensus 479 yGiaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay 558 (765)
T PLN02255 479 YGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAF 558 (765)
T ss_pred HHHHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHH
Q 004159 564 VSRAAISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASI 643 (771)
Q Consensus 564 ~~~~~~~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~Al 643 (771)
+++.++..+|+.||+|++|+|+|+|+|||||+++|+||||||++||||||||||||||||||++||||+||||||||+||
T Consensus 559 ~~~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAl 638 (765)
T PLN02255 559 VSRAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASI 638 (765)
T ss_pred HHhcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHH
Confidence 99988878999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhhHHHHhhHHHHHhhhhhHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHHhhccccccccCCCCCCccccCc
Q 004159 644 KEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAA 723 (771)
Q Consensus 644 keMi~Pgllail~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAa 723 (771)
||||+|+++++++|+++|++||+++++|||+|++++|++||+||+|+||||||||||||+|++++..++||||||+||||
T Consensus 639 keMi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi~maNaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAa 718 (765)
T PLN02255 639 KEMIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAA 718 (765)
T ss_pred HhhhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHcCccccccccCCCCcHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999996544445799999999999
Q ss_pred ccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhccchhcc
Q 004159 724 VIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIW 770 (771)
Q Consensus 724 VvGDTVGDP~KDTsGPslniLIKlm~ivslV~ap~~~~~~~~~~~~~ 770 (771)
|||||||||||||||||||||||||++|||||+|+|..++|+|.||.
T Consensus 719 VvGDTVGDPfKDTaGPslNiLIKlm~~vslv~ap~~~~~~~~~~~~~ 765 (765)
T PLN02255 719 VIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKWL 765 (765)
T ss_pred ccCCCCCCcccccccchHhHHHHHHHHHHHHHHHHHHhcCccceecC
Confidence 99999999999999999999999999999999999998889998873
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=1e-254 Score=2109.87 Aligned_cols=693 Identities=87% Similarity=1.327 Sum_probs=643.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCCCCCCCCCCCCCCcchhhhhccCCcccccHHHHHHHHHHHHhHHH
Q 004159 12 EILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATS 91 (771)
Q Consensus 12 ~~~~~~~~~~gl~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~~Ia~~I~eGA~a 91 (771)
.++++++++++++||+++++||+|++ +| +|+|||||++|||||++
T Consensus 4 ~~~~~~~~~~gl~~a~~~~~~v~~~~-----------------------------~G------~~~M~~Ia~~I~eGA~a 48 (697)
T TIGR01104 4 EILIPVCAVIGIAYAVLQWVWVSRVK-----------------------------LG------TAKMAEIQQAISEGATA 48 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCC-----------------------------CC------cHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999944 46 89999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 004159 92 FLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFA 171 (771)
Q Consensus 92 fL~~qyk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~vat~a 171 (771)
||+||||++++|++++++++++++++.+++ ..+++++|++|++||.+|||+|||+|||+
T Consensus 49 fL~rqyk~i~~~~vi~~v~l~~~~~~~~~~---------------------~~~~a~~Fl~Ga~~S~laG~iGM~iat~a 107 (697)
T TIGR01104 49 FLFTEYKYVAVFMVAFAVLIFVFLGSREGF---------------------SDFSTVAFLLGAVTSLLAGYLGMKIATYA 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc---------------------hhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999987655421100 12799999999999999999999999999
Q ss_pred hHhhHHHHhcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCcchhhhhHHhhchhhHHHHHHHHHhccc
Q 004159 172 NARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWSGLFEAITGYGLGGSSMALFGRVGGGI 251 (771)
Q Consensus 172 NvRta~AA~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~l~gfg~GaS~iALFaRvGGGI 251 (771)
|+|||+||+++++++|++|||||+||||+|+|++|++++++|++|..+++++..+.+++++||+||+|++|||+|+||||
T Consensus 108 NvRtA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGI 187 (697)
T TIGR01104 108 NARTTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGI 187 (697)
T ss_pred HHHHHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCce
Confidence 99999999999999999999999999999999999999999999975444444445789999999999999999999999
Q ss_pred ccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcccccccchhHHH
Q 004159 252 YTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAMLYP 331 (771)
Q Consensus 252 yTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v~~P 331 (771)
||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+.....+...++..+.||
T Consensus 188 yTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~P 267 (697)
T TIGR01104 188 YTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYP 267 (697)
T ss_pred eeeccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999963211212223358999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHH
Q 004159 332 LLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLC 411 (771)
Q Consensus 332 Lli~a~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~ 411 (771)
|+++++||++|++|++++| .++++||+++||+++|+|++++++.+|++++|++|+.+....++..+..++|++|+|
T Consensus 268 l~~~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~ 343 (697)
T TIGR01104 268 LALSSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLC 343 (697)
T ss_pred HHHHHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence 9999999999999999974 355668999999999999999999999999999987554322222234567899999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004159 412 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAAL 491 (771)
Q Consensus 412 ~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~GlyGiAiAa~ 491 (771)
+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|++++++||+++|+||+|++++
T Consensus 344 ~~~Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~ 423 (697)
T TIGR01104 344 VAVGLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAAL 423 (697)
T ss_pred HHHHHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhhcccc
Q 004159 492 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAIST 571 (771)
Q Consensus 492 GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~~~~~ 571 (771)
|||||++++|++|+||||+||||||||||+|||||||+||+||++||||||++||||||||+|+||+||++|+++.++..
T Consensus 424 GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~ 503 (697)
T TIGR01104 424 GMLSTAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITT 503 (697)
T ss_pred HHHHHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988878
Q ss_pred cccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhh
Q 004159 572 VDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGA 651 (771)
Q Consensus 572 ~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgl 651 (771)
+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|++
T Consensus 504 ~~l~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgl 583 (697)
T TIGR01104 504 VDVLTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGL 583 (697)
T ss_pred eecCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhhhhhHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHHhhccccccccCCCCCCccccCcccccccCC
Q 004159 652 LVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGD 731 (771)
Q Consensus 652 lail~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGD 731 (771)
+++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||+|+ ++++++||||||+||||||||||||
T Consensus 584 l~i~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKyIE~G~-~~~~~~ggKGS~aHkAaVvGDTVGD 662 (697)
T TIGR01104 584 LVMLTPLIVGFLFGVETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKYIEAGS-EHARSLGPKGSEAHKAAVIGDTVGD 662 (697)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHHHhcCc-cccccCCCCCcHHhhccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999994 3344579999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 004159 732 PLKDTSGPSLNILIKLMAVESLVFAPFFATHGGL 765 (771)
Q Consensus 732 P~KDTsGPslniLIKlm~ivslV~ap~~~~~~~~ 765 (771)
|||||||||||||||||++|||||+|+|..++++
T Consensus 663 PfKDTaGPslNilIKlm~~vslv~ap~~~~~~~~ 696 (697)
T TIGR01104 663 PLKDTSGPSLNILIKLMAVESLVFAPFFATHGGL 696 (697)
T ss_pred CccccccchHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999876444
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=4.8e-250 Score=2082.72 Aligned_cols=686 Identities=41% Similarity=0.672 Sum_probs=624.6
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcCCCCCCCCCCCCCCCCCCcchhhhhccCCcccccHHHHHHHHHHHHhHHHHHHhhh
Q 004159 18 CAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEY 97 (771)
Q Consensus 18 ~~~~gl~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~~Ia~~I~eGA~afL~~qy 97 (771)
+++++|+||+++++||+|++ +| +|||||||++|||||++||+|||
T Consensus 2 ~~~l~l~~a~~~~~~v~~~~-----------------------------~G------~~~M~~Ia~~I~eGA~afL~~qy 46 (730)
T PLN02277 2 VCIISLLFSLYLTKWVLAKD-----------------------------EG------PPEMVEISDAIRDGAEGFFRTQY 46 (730)
T ss_pred hHHHHHHHHHHHHHHHHcCC-----------------------------CC------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999944 46 89999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHH
Q 004159 98 QYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTL 177 (771)
Q Consensus 98 k~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~vat~aNvRta~ 177 (771)
|++++|++++++++++++.+. +.+.+|. ..+.++...+|++++||++|++||.+|||+|||+|||+|+|||+
T Consensus 47 k~i~~~~vv~~~~l~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~ 118 (730)
T PLN02277 47 GTISKMAVVLAFVILGIYLFR-SLTPQQE-------AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSS 118 (730)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-ccccccc-------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999987665431 1111111 11223334567899999999999999999999999999999999
Q ss_pred HHhcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC------CcchhhhhHHhhchhhHHHHHHHHHhccc
Q 004159 178 EARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWSGLFEAITGYGLGGSSMALFGRVGGGI 251 (771)
Q Consensus 178 AA~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~~------~~~~~~~~l~gfg~GaS~iALFaRvGGGI 251 (771)
|||++++++|++|||||+||||+|+|++|++++++|++|..++.. +..+.+++++||+||+|++|||+|+||||
T Consensus 119 AA~~~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGI 198 (730)
T PLN02277 119 AARRSAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGI 198 (730)
T ss_pred HHHhCHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCce
Confidence 999999999999999999999999999999999999998644321 12235679999999999999999999999
Q ss_pred ccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhc--ccccccchhH
Q 004159 252 YTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHELTAML 329 (771)
Q Consensus 252 yTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~--~~~~~~~~v~ 329 (771)
||||||||||||||||+|||||||||||||||||||||||||||||||||||+++++++|+||..... ........++
T Consensus 199 yTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~ 278 (730)
T PLN02277 199 YTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFIL 278 (730)
T ss_pred eeeccccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999964311 1111124589
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcc---ccChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchh
Q 004159 330 YPLLISSAGIIVCLITTLFATDIFEIKA---VKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNW 406 (771)
Q Consensus 330 ~PLli~a~gi~~siig~~~v~~~~~~~~---~~~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~ 406 (771)
|||+++++||++|++|++++|...++++ ++||+++||+|+|+|++++++++|++++|++.+. ..+..||
T Consensus 279 ~Pl~i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~--------~~~~~~~ 350 (730)
T PLN02277 279 FPLVVHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYTE--------QAPSAWF 350 (730)
T ss_pred HHHHHHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccchHH
Confidence 9999999999999999999863211001 2489999999999999999999999999876320 1112468
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----
Q 004159 407 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA----- 481 (771)
Q Consensus 407 ~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~----- 481 (771)
++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|++++++||+++
T Consensus 351 ~~f~~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~ 430 (730)
T PLN02277 351 NFALCGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGL 430 (730)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ---------HHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccccccchhhHHHH
Q 004159 482 ---------AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSA 552 (771)
Q Consensus 482 ---------GlyGiAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTaAi~KGfAIGSA 552 (771)
|+||+|+|++|||||++++|++|+||||+||||||||||+||||||||||+||++||||||++||||||||
T Consensus 431 ~~~~~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSA 510 (730)
T PLN02277 431 VDENGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSA 510 (730)
T ss_pred ccccccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc------ccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 004159 553 ALVSLALFGAFVSRAA------ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGT 626 (771)
Q Consensus 553 aL~aLaLf~ay~~~~~------~~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~ 626 (771)
+|+||+||++|+++.+ +..+||.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||+
T Consensus 511 aL~alaLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~ 590 (730)
T PLN02277 511 ALASFLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYK 590 (730)
T ss_pred HHHHHHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCC
Confidence 9999999999998753 3469999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhh------------hhhHHHHHhhHHHHHHHHHHHHhhcccchh
Q 004159 627 AKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQIAISASNTGGAW 694 (771)
Q Consensus 627 ~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~~~------------G~~al~G~L~G~~vsG~~~Ai~m~NaGGAW 694 (771)
+||||+||||||||+||||||+|++++|++|+++|++| |+++++|||+|++++|++||+||+|+||||
T Consensus 591 ~kPdY~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi~m~NaGGAW 670 (730)
T PLN02277 591 EKPDYGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMALFLNTAGGAW 670 (730)
T ss_pred CCCChHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 99999999999999999999999999999999999884 679999999999999999999999999999
Q ss_pred hhhhHHHhhccccccccCCCCCCccccCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 004159 695 DNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFA 760 (771)
Q Consensus 695 DNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDP~KDTsGPslniLIKlm~ivslV~ap~~~ 760 (771)
||||||||+|++ ||||||+|||||||||||||||||||||||||||||++|||||+|+|.
T Consensus 671 DNAKKyIE~G~~------ggKGS~aHkAaVvGDTVGDPfKDTaGPSlNiLIKlm~~vslV~ap~~~ 730 (730)
T PLN02277 671 DNAKKYIETGAL------GGKGSEAHKAAVTGDTVGDPFKDTAGPSIHVLIKMLATITLVMAPMFL 730 (730)
T ss_pred HhHHHHHhcCCC------CCCCcHHhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHhhC
Confidence 999999999974 899999999999999999999999999999999999999999999973
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=6.5e-247 Score=2060.78 Aligned_cols=669 Identities=55% Similarity=0.891 Sum_probs=606.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCCcCCCCCCCCCCCCCCCCCCcchhhhhccCCcccccHHHHHHHHHHHHhHHHHHHhhhh
Q 004159 19 AVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGATSFLFTEYQ 98 (771)
Q Consensus 19 ~~~gl~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~~Ia~~I~eGA~afL~~qyk 98 (771)
++++++||+++++||+|++ +| +++||||+++|||||++||+||||
T Consensus 1 ~~~~l~~a~~~~~~v~~~~-----------------------------~G------~~~m~~Ia~~I~eGA~aFL~reYk 45 (682)
T PF03030_consen 1 AVLGLIFALFLARWVLKQD-----------------------------EG------NEKMQEIAAAIQEGAMAFLKREYK 45 (682)
T ss_dssp -HHHHHHHHHHHHHHHTS---------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhcCC-----------------------------CC------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999954 46 899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHH
Q 004159 99 YVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIATFANARTTLE 178 (771)
Q Consensus 99 ~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~vat~aNvRta~A 178 (771)
++++|+++++++|++++...+ ..++++++||++|++||.+|||+|||+|||+|+||+++
T Consensus 46 ~i~~~~vi~~~ll~~~~~~~~---------------------~~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~A 104 (682)
T PF03030_consen 46 TIAIFIVIVAILLFFLLGFLG---------------------GQGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANA 104 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 999999999999988764311 14579999999999999999999999999999999999
Q ss_pred H-hcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC-CCcchhhhhHHhhchhhHHHHHHHHHhcccccchh
Q 004159 179 A-RKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAA 256 (771)
Q Consensus 179 A-~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~-~~~~~~~~~l~gfg~GaS~iALFaRvGGGIyTKAA 256 (771)
| ++++++||++|||+|+||||+|+|++|++++++|++|...++ .++++.+++++||+||+|++|||+|+|||||||||
T Consensus 105 Ar~~gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAA 184 (682)
T PF03030_consen 105 ARTRGLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAA 184 (682)
T ss_dssp CC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHH
Confidence 9 599999999999999999999999999999999999976544 34566789999999999999999999999999999
Q ss_pred hccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcccccccchhHHHHHHHH
Q 004159 257 DVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAMLYPLLISS 336 (771)
Q Consensus 257 DVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v~~PLli~a 336 (771)
|||||||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|+.........+...++|||++++
T Consensus 185 DVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~ 264 (682)
T PF03030_consen 185 DVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAA 264 (682)
T ss_dssp HHHHHHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHH
T ss_pred HHhhHHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998753221122337899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHHHHHHH
Q 004159 337 AGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGL 416 (771)
Q Consensus 337 ~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl 416 (771)
+||++|++|++++|.. +.++.+||+|+||+|+|+|++++++++|++++|++..+. ......||++|+|+++|+
T Consensus 265 ~gii~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl 337 (682)
T PF03030_consen 265 VGIIASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGL 337 (682)
T ss_dssp HHHHHHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHH
Confidence 9999999999998753 333456999999999999999999999999999882211 123457999999999999
Q ss_pred HHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 004159 417 WAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAAL 491 (771)
Q Consensus 417 ~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~-----GlyGiAiAa~ 491 (771)
++|++|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|++++++||+++ |+||+|+|++
T Consensus 338 ~~g~lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~ 417 (682)
T PF03030_consen 338 VAGVLIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAV 417 (682)
T ss_dssp HHHHHHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhh----
Q 004159 492 GMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA---- 567 (771)
Q Consensus 492 GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~---- 567 (771)
|||||++++|++|+||||+||||||||||+||||||||||+|||+||||||+|||||||||+|+||+||++|+++.
T Consensus 418 GMLst~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~ 497 (682)
T PF03030_consen 418 GMLSTAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFN 497 (682)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --cccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhh
Q 004159 568 --AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 645 (771)
Q Consensus 568 --~~~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~Alke 645 (771)
+...+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+||||
T Consensus 498 ~~~~~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alke 577 (682)
T PF03030_consen 498 GTSIQSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKE 577 (682)
T ss_dssp --T-S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHhhHHHHHhhhhhHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHHhhccccccccCCCCCCccccCccc
Q 004159 646 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVI 725 (771)
Q Consensus 646 Mi~Pgllail~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVv 725 (771)
|++|+++++++|+++|++||+++++|+|+|++++|++||+||+|+||||||||||||+|++ ||||||+||||||
T Consensus 578 mi~P~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g~~------ggKgS~aHkAaVv 651 (682)
T PF03030_consen 578 MILPGLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQGNL------GGKGSEAHKAAVV 651 (682)
T ss_dssp THHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S------HHTTSHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhccCc------CCCCChhhCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 004159 726 GDTIGDPLKDTSGPSLNILIKLMAVESLVFA 756 (771)
Q Consensus 726 GDTVGDP~KDTsGPslniLIKlm~ivslV~a 756 (771)
|||||||||||||||||||||||+++||||+
T Consensus 652 GDTVGDP~KDTaGPslnilIKl~~~vslv~a 682 (682)
T PF03030_consen 652 GDTVGDPFKDTAGPSLNILIKLMSIVSLVFA 682 (682)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccccCcchHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999986
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=2.4e-243 Score=2016.90 Aligned_cols=649 Identities=52% Similarity=0.845 Sum_probs=613.0
Q ss_pred hhccCCcccccHHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhh
Q 004159 65 EEEGLNDHNVVIKCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAA 144 (771)
Q Consensus 65 ~~~g~~~~~~~~~m~~Ia~~I~eGA~afL~~qyk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
|++| +|+||||+++|||||++||+||||++++|+++++++++.+.. ....+|
T Consensus 4 ~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~~~ 55 (666)
T PRK00733 4 QPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFLGW 55 (666)
T ss_pred CCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHHHH
Confidence 5567 999999999999999999999999999999999999865411 112457
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 004159 145 FSTVSFLLGGITSVVSGFLGMKIATFANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDW 224 (771)
Q Consensus 145 ~~~~~Fl~Ga~~S~laG~iGM~vat~aNvRta~AA~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~~~~ 224 (771)
++++||++|++||.++||+|||+|||+|+|||+|||++++++|++|||+|+||||+|+|++|++++++|++|.... +.
T Consensus 56 ~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~--~~ 133 (666)
T PRK00733 56 LTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA--NP 133 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986322 23
Q ss_pred chhhhhHHhhchhhHHHHHHHHHhcccccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHH
Q 004159 225 SGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 304 (771)
Q Consensus 225 ~~~~~~l~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~ 304 (771)
.+.+++++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||+
T Consensus 134 ~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfESy~ 213 (666)
T PRK00733 134 DDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFESYA 213 (666)
T ss_pred hhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHH
Q 004159 305 ESSCAALVVASISSFGINHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVS 384 (771)
Q Consensus 305 ~si~aamilg~~~~~~~~~~~~~v~~PLli~a~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~~~~ 384 (771)
++++++|+|+.... ....+...++|||+++++||++|++|++++| .++++||+++||+|+|+|++++++++|+++
T Consensus 214 ~sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~ 288 (666)
T PRK00733 214 VTIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFVR----LGKGGNPMKALNRGLIVTAVLSIVLTYFAT 288 (666)
T ss_pred HHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997321 1123456799999999999999999999964 456679999999999999999999999999
Q ss_pred HHhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhH
Q 004159 385 WIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVI 464 (771)
Q Consensus 385 ~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~ 464 (771)
+|++|+.. ....||++|+|+++|+++|++|+++||||||++||||||||++|+||||||||+|+++||+||+
T Consensus 289 ~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~St~ 360 (666)
T PRK00733 289 YWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMESTA 360 (666)
T ss_pred HHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 99997521 2345899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCcc
Q 004159 465 IPIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTT 540 (771)
Q Consensus 465 ~Pvl~i~~ai~~sy~l----~GlyGiAiAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTT 540 (771)
+|+++|++++++||++ +|+||++++++|||||+++++++|+||||+||||||||||+|||||||+||+||++||||
T Consensus 361 ~pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTT 440 (666)
T PRK00733 361 LPVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGNTT 440 (666)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhcccch
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhh-------cccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004159 541 AAIGKGFAIGSAALVSLALFGAFVSRA-------AISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVR 613 (771)
Q Consensus 541 aAi~KGfAIGSAaL~aLaLf~ay~~~~-------~~~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVR 613 (771)
||++||||||||+|+||+||++|+++. ....+|+.||+|++|+|+|+|+|||||+++|+||+|+|++||||||
T Consensus 441 ~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVR 520 (666)
T PRK00733 441 KAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVR 520 (666)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987 4567999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhHHHHHhhHHHHHHHHHHHHhhcccch
Q 004159 614 RQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGA 693 (771)
Q Consensus 614 RQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGA 693 (771)
|||||+||||||++||||+||||||||+||||||+|+++++++|+++|+++|+++++|+|+|++++|++||+||+|+|||
T Consensus 521 rQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi~m~NaGGA 600 (666)
T PRK00733 521 RQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAIFMANAGGA 600 (666)
T ss_pred HHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhccccccccCCCCCCccccCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 004159 694 WDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATH 762 (771)
Q Consensus 694 WDNAKKyIE~G~~~~~~~~ggKGS~aHkAaVvGDTVGDP~KDTsGPslniLIKlm~ivslV~ap~~~~~ 762 (771)
|||||||||+|++ ||||||+|||||||||||||||||||||||||||||+++||||+|+|..+
T Consensus 601 WDNAKKyIE~g~~------gGKgS~aHkAaVvGDTVGDPfKDTaGPslnilIKl~~~vslv~ap~~~~~ 663 (666)
T PRK00733 601 WDNAKKYIEDGNH------GGKGSEAHKAAVVGDTVGDPFKDTAGPALNPLIKLMNIVALLIAPLLVHL 663 (666)
T ss_pred HHHHHHHHhcCCC------CCCCcHHHhccccCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999984 89999999999999999999999999999999999999999999999764
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=2e-238 Score=1908.78 Aligned_cols=680 Identities=48% Similarity=0.766 Sum_probs=634.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCCCCCCCCCCCCCCcchhhhhccCCcccccHHHHHHHHHHHHhH
Q 004159 10 GAEILIPVCAVIGIAFALVQWVLVSNIKLSPARDASGNSPGAGGGKNGCTDYLIEEEEGLNDHNVVIKCAEIQSAISEGA 89 (771)
Q Consensus 10 ~~~~~~~~~~~~gl~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~~Ia~~I~eGA 89 (771)
...++.+.|++++++||.|+++||+|. ++| |||||||+.+|||||
T Consensus 4 ~~~~l~i~~gl~sv~~A~~~~~sVl~~-----------------------------~~G------n~rm~eIa~aIreGA 48 (703)
T COG3808 4 SVLYLAIACGLLSVLYAAWAAKSVLRA-----------------------------DAG------NERMKEIAAAIREGA 48 (703)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------cCC------cHHHHHHHHHHHHhH
Confidence 356777899999999999999999993 357 999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhccccccccCCCccCCCccCCcchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Q 004159 90 TSFLFTEYQYVGVFMVAFAILIFLFLGSVEGFSTKSQACTYDPFKMCKPALATAAFSTVSFLLGGITSVVSGFLGMKIAT 169 (771)
Q Consensus 90 ~afL~~qyk~i~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~vat 169 (771)
++||+||||+|+++.+++++++.+++.. |.++++|++|++.|+.+||+||+++|
T Consensus 49 ~ayL~rqy~tiavv~ivva~ll~~~l~~--------------------------~~ta~~Fl~GAv~S~~AG~~GM~vst 102 (703)
T COG3808 49 MAYLARQYKTIAVVGIVVAILLAWFLLS--------------------------WLTAIGFLLGAVLSAAAGFAGMHVST 102 (703)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHhhhcccceeeee
Confidence 9999999999999999999888766531 58999999999999999999999999
Q ss_pred hhhHhhHHHHhcChhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC--CcchhhhhHHhhchhhHHHHHHHHH
Q 004159 170 FANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD--DWSGLFEAITGYGLGGSSMALFGRV 247 (771)
Q Consensus 170 ~aNvRta~AA~~~~~~al~vafrgGsVmGl~vvglgLl~l~~~~~~~~~~~~~--~~~~~~~~l~gfg~GaS~iALFaRv 247 (771)
|+|+|||+||++++.++|++|||+|+|||++|+|++||+++++|+++....+. +.+.....++||+||||+|++|+|+
T Consensus 103 rAN~RtAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRv 182 (703)
T COG3808 103 RANVRTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARV 182 (703)
T ss_pred hhhhHHHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998754432 2234567899999999999999999
Q ss_pred hcccccchhhccccccchhccCCCCCCCCCccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcccccccch
Q 004159 248 GGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTA 327 (771)
Q Consensus 248 GGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~ 327 (771)
|||||||+||||+|||||||+||||||||||+||||||||||||||||+|||||||+++++|+|+|++..+.+.+.-...
T Consensus 183 GGGIfTKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ 262 (703)
T COG3808 183 GGGIFTKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAV 262 (703)
T ss_pred cCceecchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999764333222345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhH
Q 004159 328 MLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQ 407 (771)
Q Consensus 328 v~~PLli~a~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~ 407 (771)
++|||.+++++|++|++|+||+| .++++++|.+|++++|.+.+++++++|+.+++++..+..- -.+..+..++
T Consensus 263 ilyPl~i~a~~i~~Si~gtffVk----~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~~~---v~g~~~~~~~ 335 (703)
T COG3808 263 ILYPLAICAVGIITSIIGTFFVK----LGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTIGT---VAGMSIGAIN 335 (703)
T ss_pred HHHHHHHHHHHHHHHHHhheEEE----eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cccccccchh
Confidence 88999999999999999999964 6688999999999999999999999999999988522110 0122345678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004159 408 LFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIA 487 (771)
Q Consensus 408 ~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~GlyGiA 487 (771)
+|+|.++|++++.+|+++||||||++|||||+|||+|.|||+||||+||++|||||++|.++|.++|+.+|+++|+||+|
T Consensus 336 lf~~~~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~A 415 (703)
T COG3808 336 LFFCGVIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTA 415 (703)
T ss_pred hHHHHHHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhh
Q 004159 488 VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA 567 (771)
Q Consensus 488 iAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~ 567 (771)
+|++|||++++++++.|+|||++||||||+||+|||||||++||+||++||||||+|||||||||+|+||+||++|..+.
T Consensus 416 IAa~~ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~ 495 (703)
T COG3808 416 IAAVGMLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDL 495 (703)
T ss_pred HHHHHHHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred cc----------------cccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCh
Q 004159 568 AI----------------STVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDY 631 (771)
Q Consensus 568 ~~----------------~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY 631 (771)
.. ..+|+.||+|++|+++|+++||+||+++|.||||||++|||||||||||+|||||||+||||
T Consensus 496 ~~~a~~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY 575 (703)
T COG3808 496 KYFAANGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDY 575 (703)
T ss_pred hhHHhcCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCch
Confidence 41 24899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHHHhhcccccccc
Q 004159 632 ATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHART 711 (771)
Q Consensus 632 ~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~~~G~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKyIE~G~~~~~~~ 711 (771)
+|||||+||+|||||+.|++++|++|+++|+++|+++|+|+|+|.+++|+++||+|+|+||||||||||||+||. .
T Consensus 576 ~R~Vdi~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai~m~n~GGAWDNAKK~iE~G~~----~ 651 (703)
T COG3808 576 GRCVDILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAISMANGGGAWDNAKKYIEDGNG----V 651 (703)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHhhccCCCcchhhhhhhhcCCC----c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864 3
Q ss_pred CCCCCCccccCcccccccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 004159 712 LGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAT 761 (771)
Q Consensus 712 ~ggKGS~aHkAaVvGDTVGDP~KDTsGPslniLIKlm~ivslV~ap~~~~ 761 (771)
.++||||+|||+|+|||||||||||+|||+|||||+||+|++++.|+|.+
T Consensus 652 ~~~KGse~HKAaV~GDTVGDP~KDTaGPalN~lIKi~niVall~~~v~~h 701 (703)
T COG3808 652 GHKKGSEAHKAAVTGDTVGDPYKDTAGPALNPLIKIMNIVALLLLAVFAH 701 (703)
T ss_pred CCCcccccccccccCCCCCCcccccCCccccHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999975
No 7
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=91.25 E-value=4.8 Score=47.14 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=40.9
Q ss_pred cccccchhhccccccchhccCCCCCCCC-CccccccccccccccccccchhhhhhHHHHHHHHHHHHHhhhcccccccch
Q 004159 249 GGIYTKAADVGADLVGKVERNIPEDDPR-NPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTA 327 (771)
Q Consensus 249 GGIyTKAADVGADLVGKVEagIPEDDPR-NPavIADnVGDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~ 327 (771)
|++=++..-+..||- |||||| +++==-=..|||+| ++++.++.+.... ...
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNiG---------------sl~~p~i~~~~~~------~~g 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINIG---------------SLIAPIITGLLAI------NYG 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeehH---------------HHHHHHHHHHHHH------hhC
Confidence 555677778888885 999999 23221123444544 4455555444321 011
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004159 328 MLYPLLISSAGIIVCLITTLFATDIF 353 (771)
Q Consensus 328 v~~PLli~a~gi~~siig~~~v~~~~ 353 (771)
-..-+-++++|+..+++--.+.|+.+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 11223455677666666555555443
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=77.94 E-value=13 Score=45.08 Aligned_cols=148 Identities=15% Similarity=0.079 Sum_probs=84.5
Q ss_pred ccccccccccchhhhhhHHHHHHHHHHHHHhhhcccccccchhH--HHHHHHHHHHHHHHHHHHhhhhhhhhccccChHH
Q 004159 286 GDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHELTAML--YPLLISSAGIIVCLITTLFATDIFEIKAVKEIEP 363 (771)
Q Consensus 286 GDNVGD~AGmgADLFESy~~si~aamilg~~~~~~~~~~~~~v~--~PLli~a~gi~~siig~~~v~~~~~~~~~~~~~~ 363 (771)
.|||||.+|=.|--=--.-+|.+++++-+........ ...... +-++-..+..+ .++.+++....+|.++++ .++
T Consensus 210 ADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~-~~~~~~~~~v~~Pl~i~~~-gii~Siig~~~v~~~~~~-~~~ 286 (682)
T PF03030_consen 210 ADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLF-GTNGFNFSGVLFPLLIAAV-GIIASIIGIFFVRTKKGA-TSK 286 (682)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSH-HHHTT-HHHHTHHHHHHHH-HHHHHHHHHHHHHTT----SGG
T ss_pred HHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHh-cccccchhHHHHHHHHHHH-HHHHHHHheeEEEecCCc-ccc
Confidence 3999999998887444445667666553333322111 111111 22233344443 677777777777777644 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHh
Q 004159 364 SLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 442 (771)
Q Consensus 364 aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~ 442 (771)
...+.+....+++.++..+..+++.. + + ...........++....=.+.|++.+.+-.++|.|.-.+-.+=.|
T Consensus 287 ~~~~aL~~g~~vs~~l~~i~~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~iGl~~g~lI~~~TeYyTs~~~~PVr 359 (682)
T PF03030_consen 287 DPMKALRRGYIVSSILSIILFFFLTY--W-L---LGFSFFGSGISWWGLFGCVLIGLVAGVLIGFITEYYTSYSYRPVR 359 (682)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHH--H-H---SEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--H-H---HhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHH
Confidence 67778888888888887777765421 0 0 000000111236666666778999999999999885555554444
No 9
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=61.14 E-value=86 Score=38.37 Aligned_cols=144 Identities=23% Similarity=0.359 Sum_probs=89.4
Q ss_pred CChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHH-HHhhhcchhhHH
Q 004159 575 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDA-SIKEMIPPGALV 653 (771)
Q Consensus 575 ~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~-AlkeMi~Pglla 653 (771)
.++++-+.+++|+..-.+=.-.-|+.=.|+-.|.-+.-||- +++..+++=|+ +.-.|...++-.
T Consensus 53 ~~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~---------------~~~al~vafr~G~vmGl~vvgl~L 117 (666)
T PRK00733 53 LGWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKG---------------LGKALKVAFRGGAVMGLLVVGLGL 117 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC---------------HHHHHHHHhhcccHHHHHHHHHHH
Confidence 45578888999998888887788887777766666655443 34455554332 223344333322
Q ss_pred HHhhHHHHHhhh----hhHHHHHhhHHHHHHHHHHHHhhcccchhhhhhHH-------HhhccccccccCCCCCCccccC
Q 004159 654 MLTPLIVGIFFG----VETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKY-------IEAGASEHARTLGPKGSDPHKA 722 (771)
Q Consensus 654 il~Pi~vG~~~G----~~al~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKKy-------IE~G~~~~~~~~ggKGS~aHkA 722 (771)
.-.-++.- ++. ++-..-.+.|--+-+=++|+|.--+||=|-+|-.- +|.|-.| -|++.-
T Consensus 118 lgl~~~~~-~~~~~~~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPE---------DDPRNP 187 (666)
T PRK00733 118 LGVAGLYL-VFGLGANPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPE---------DDPRNP 187 (666)
T ss_pred HHHHHHHH-HHhccccchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCC---------CCCCCc
Confidence 21111111 122 22223334444444567899999999999877542 6776543 356788
Q ss_pred cccccccCCCCCCCCCchhHH
Q 004159 723 AVIGDTIGDPLKDTSGPSLNI 743 (771)
Q Consensus 723 aVvGDTVGDP~KDTsGPslni 743 (771)
||+-|-|||=--|-+|+.=+.
T Consensus 188 avIADnVGDNVGD~AGmgADl 208 (666)
T PRK00733 188 AVIADNVGDNVGDCAGMGADL 208 (666)
T ss_pred chHHHhhcccchhhccccchH
Confidence 999999999999999996543
No 10
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=59.82 E-value=1.5e+02 Score=28.17 Aligned_cols=102 Identities=19% Similarity=0.353 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhccccChHHHHHHHHHHHHHHHHHHHH
Q 004159 302 SYAESSCAALVVASISSFGINHELTAMLYPLLISSAGIIVCLITTLFATDIFEIKAVKEIEPSLKKQLIISTVLMTVAIA 381 (771)
Q Consensus 302 Sy~~si~aamilg~~~~~~~~~~~~~v~~PLli~a~gi~~siig~~~v~~~~~~~~~~~~~~aL~~g~~vs~il~~i~~~ 381 (771)
+|..+.+..++++....+ .+.+.-.+|.++..+.++++.+|.+..-++ .+ +|-+-.|..+..+... ..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~--~~-----~kG~l~G~~~Gl~y~~-il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGRK--AG-----SKGWLHGLLVGLLYFL-ILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--Hc-----cchHHHHHHHHHHHHH-HHH
Confidence 444445545555544322 123345688888888899999999876321 12 2456666655544433 334
Q ss_pred HHHHHhcCccccccccCcccccchhHHHHHHHHHHHHHHH
Q 004159 382 IVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLI 421 (771)
Q Consensus 382 ~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~l 421 (771)
.+++...++.+.. .........|.+.|.+.|++
T Consensus 83 lis~~~~~~~~~~-------~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFSG-------SSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcchH-------HHHHHHHHHHHHHHHHHhhc
Confidence 4455444331110 11234677888888887753
No 11
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=57.68 E-value=1.4e+02 Score=32.76 Aligned_cols=100 Identities=21% Similarity=0.410 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccc--ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHH
Q 004159 334 ISSAGIIVCLITTLFATDIFEIKAVK--EIEPSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLC 411 (771)
Q Consensus 334 i~a~gi~~siig~~~v~~~~~~~~~~--~~~~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~ 411 (771)
+...+++.-++|..+... +.++++ +-.+..++++.. .+++.++.. .|..+|+.+. .+.|..++-
T Consensus 105 ~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~--~Y~~~~~~~~---------~~~~~~~lP 170 (269)
T PF06800_consen 105 IGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYW--IYSVIPKAFH---------VSGWSAFLP 170 (269)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHH--HHHHHHHhcC---------CChhHhHHH
Confidence 344556667777776432 222222 224567777663 445554433 3445555332 345888889
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhh
Q 004159 412 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALG 459 (771)
Q Consensus 412 ~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~G 459 (771)
=.+|++.+.++--.-+ ++|.++ + + +.-|++.|+--+
T Consensus 171 qaiGm~i~a~i~~~~~------~~~~~~--k--~--~~~nil~G~~w~ 206 (269)
T PF06800_consen 171 QAIGMLIGAFIFNLFS------KKPFFE--K--K--SWKNILTGLIWG 206 (269)
T ss_pred HHHHHHHHHHHHhhcc------cccccc--c--c--hHHhhHHHHHHH
Confidence 9999997765544422 233332 1 1 356899998644
No 12
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=56.90 E-value=97 Score=38.90 Aligned_cols=93 Identities=19% Similarity=0.308 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhh
Q 004159 461 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 534 (771)
Q Consensus 461 ~St~~Pvl~i~~ai~~sy~l~GlyGiA------iAa~GMLst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LD 534 (771)
...++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++|- +|-=++..-||.|+--|.-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy---------~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDY---------AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777777665555542 233444445555566663 45555555555555556667
Q ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHH
Q 004159 535 AAGNTTAAIGKGFAIGSAALVSLALFGAFV 564 (771)
Q Consensus 535 avGNTTaAi~KGfAIGSAaL~aLaLf~ay~ 564 (771)
|+-.+.+-+++. |-.++++..+-|.++.
T Consensus 269 Av~~a~~~~g~~--I~~s~lT~~~gf~~l~ 296 (910)
T TIGR00833 269 AAAEALRGTGKA--ILGSALTVAVAFLALS 296 (910)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 777777666654 4345555555455443
No 13
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=54.91 E-value=1.8e+02 Score=35.05 Aligned_cols=101 Identities=24% Similarity=0.325 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhh
Q 004159 364 SLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADS 443 (771)
Q Consensus 364 aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~a 443 (771)
=|+||+-.-.++.++..+.+.|++. .|..-.|.++|-+.+..-|++--+- |. |-=-+.||+
T Consensus 51 yL~rqy~tiavv~ivva~ll~~~l~----------------~~~ta~~Fl~GAv~S~~AG~~GM~v-st--rAN~RtAqA 111 (703)
T COG3808 51 YLARQYKTIAVVGIVVAILLAWFLL----------------SWLTAIGFLLGAVLSAAAGFAGMHV-ST--RANVRTAQA 111 (703)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHhhhcccceee-ee--hhhhHHHHH
Confidence 4667777777777666666665542 2555567777777777666665443 33 444567777
Q ss_pred cccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhheecc
Q 004159 444 CRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDA 505 (771)
Q Consensus 444 s~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l~GlyGiAiAa~GMLst~~i~la~Da 505 (771)
.++| +=.+|. ++|.-+.+-|...+.+++|..-.+-+-.-.
T Consensus 112 As~~----l~~al~------------------vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~ 151 (703)
T COG3808 112 ASTG----LGKALD------------------VAFKSGAVMGLSVAGLALLGLSLYYLVLTS 151 (703)
T ss_pred HHhh----hhhhhh------------------hhcccCcchhhHHHHHHHHHHHhhhheeec
Confidence 7665 333333 344445566667777777666555444433
No 14
>PRK11677 hypothetical protein; Provisional
Probab=50.96 E-value=19 Score=35.60 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCchhHHHH
Q 004159 409 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVA 441 (771)
Q Consensus 409 f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA 441 (771)
|..+++|+++|++||++.-.||+.+.+--+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 467779999999999999999988765544443
No 15
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=49.33 E-value=5e+02 Score=32.60 Aligned_cols=143 Identities=19% Similarity=0.332 Sum_probs=85.1
Q ss_pred hhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHH-HHHhhhcchhhHHHH
Q 004159 577 PKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGALVML 655 (771)
Q Consensus 577 p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~-~AlkeMi~Pgllail 655 (771)
+++-+++++|+..-.+-.-.-|+-=.|+-.|.-+.-||-. .+..+++=| .+.-.|.+.++-.+-
T Consensus 139 ~~~~~~Fl~Ga~~S~~aG~iGM~vat~ANvRtA~AA~~gl---------------~~al~vAfr~GaVmGl~vvgl~Llg 203 (765)
T PLN02255 139 AFSTVAFLLGALTSVVSGFLGMKIATYANARTTLEARKGV---------------GKAFITAFRSGAVMGFLLAANGLLV 203 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---------------HHHHhhhhhcccHHHHHHHHHHHHH
Confidence 4688999999998888777788877777666666655532 344444322 223344433322211
Q ss_pred hhHHHHH---hhhhhH--HHHHhhHHHHHHHHHHHHhhcccchhhhhhH-------HHhhccccccccCCCCCCccccCc
Q 004159 656 TPLIVGI---FFGVET--LSGVLAGSLVSGVQIAISASNTGGAWDNAKK-------YIEAGASEHARTLGPKGSDPHKAA 723 (771)
Q Consensus 656 ~Pi~vG~---~~G~~a--l~G~L~G~~vsG~~~Ai~m~NaGGAWDNAKK-------yIE~G~~~~~~~~ggKGS~aHkAa 723 (771)
.-++.-+ .++.+. +--.+.|--+-+=++|+|+--.||=|-.|-. =+|.|-.| =|++.-|
T Consensus 204 l~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPE---------DDPRNPA 274 (765)
T PLN02255 204 LYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPE---------DDPRNPA 274 (765)
T ss_pred HHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHHHHcCceeeeccccchhhhhhhhcCCCC---------CCCCCcc
Confidence 1111110 122111 1123444444455789999999998865532 14665432 3567889
Q ss_pred ccccccCCCCCCCCCchhHH
Q 004159 724 VIGDTIGDPLKDTSGPSLNI 743 (771)
Q Consensus 724 VvGDTVGDP~KDTsGPslni 743 (771)
|+-|-|||=--|.+|+.=+.
T Consensus 275 vIADnVGDNVGD~AGmgADL 294 (765)
T PLN02255 275 VIADNVGDNVGDIAGMGSDL 294 (765)
T ss_pred hHHHhhcccccccccccchh
Confidence 99999999999999996543
No 16
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=45.96 E-value=1e+02 Score=31.65 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=43.5
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhhhhhHHHHH---hhHHHHHHHHH
Q 004159 607 KMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGV---LAGSLVSGVQI 683 (771)
Q Consensus 607 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~~~G~~al~G~---L~G~~vsG~~~ 683 (771)
=+-|++|+++|+. .+-++++-++.+.+.+++.-+.-. +..+.+.+.=+++|...+-|| |+-..++|.+.
T Consensus 103 VifdRIre~~~~~-------~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~s 174 (189)
T PF02355_consen 103 VIFDRIREELRAS-------RGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYS 174 (189)
T ss_dssp HHHHHHHHHHCC--------STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHhhhC-------CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 3669999998763 356788888888888888666533 333444444455665544433 44445556666
Q ss_pred HHHhh
Q 004159 684 AISAS 688 (771)
Q Consensus 684 Ai~m~ 688 (771)
+++.+
T Consensus 175 s~~ia 179 (189)
T PF02355_consen 175 SLFIA 179 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 17
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=42.45 E-value=68 Score=35.65 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=76.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhc----cc--ccccC--ChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Q 004159 546 GFAIGSAALVSLALFGAFVSRAA----IS--TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFN 617 (771)
Q Consensus 546 GfAIGSAaL~aLaLf~ay~~~~~----~~--~~~l~--~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFr 617 (771)
++=-+|+.+.-...++.+..... .. -.+.. ++....+.++=..+.++||-+-. .++-...|+-|+.|+|=.
T Consensus 201 Piifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~ 279 (346)
T PF00344_consen 201 PIIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGD 279 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTS
T ss_pred hHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCC
Confidence 34455666666666666654321 11 13344 88899999999999999998866 888888889999999988
Q ss_pred cCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHHhh
Q 004159 618 TIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 664 (771)
Q Consensus 618 eipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~~~ 664 (771)
-+||+..|++..+| --++..+.++-.-+.-++++ ..|.+++..+
T Consensus 280 ~I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~ 323 (346)
T PF00344_consen 280 YIPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-VLPLIFGLFG 323 (346)
T ss_dssp SSSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHTTSS
T ss_pred EeCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHc
Confidence 99999988555554 22334444444444444444 3566666544
No 18
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=37.14 E-value=2.1e+02 Score=35.36 Aligned_cols=141 Identities=18% Similarity=0.286 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcC---------------hhHHHHhhccccchhHHHHHHHHHHHHH
Q 004159 146 STVSFLLGGITSVVSGFLGMKIATFANARTTLEARKG---------------VGKAFIVAFRSGAVMGFLLAANGLLVLF 210 (771)
Q Consensus 146 ~~~~Fl~Ga~~S~laG~iGM~vat~aNvRta~AA~~~---------------~~~al~vafrgGsVmGl~vvglgLl~l~ 210 (771)
+.+..++|+..-.+=.=+-|+-=.|+--|.-+.-||. +++..+++-| .+.-.|.+-++-.+..-
T Consensus 511 vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~P 589 (697)
T TIGR01104 511 VFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLTP 589 (697)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHHH
Confidence 4455666766666655555666566655555555432 3344555544 33344444322111111
Q ss_pred HHH-HHHhhhcCCCcchhhhhHHhhchhhHHHHHHHHHhcccccchhhccccccchhccC--------CCCCCCCCcccc
Q 004159 211 IAI-NLFKLYYGDDWSGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERN--------IPEDDPRNPAVI 281 (771)
Q Consensus 211 ~~~-~~~~~~~~~~~~~~~~~l~gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavI 281 (771)
++. +++ +. ..+--.+.|.-.-+-+.|+|.--+||-+-.|=.. +|.| -.-.|.+.-+|+
T Consensus 590 i~vG~~~----G~--~al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVv 656 (697)
T TIGR01104 590 LIVGFLF----GV--ETLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVI 656 (697)
T ss_pred HHHHHhc----cH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhcccc
Confidence 111 111 11 1111223333334457899999999999877643 5665 345567788999
Q ss_pred ccccccccccccccchhhh
Q 004159 282 ADNVGDNVGDIAGMGSDLF 300 (771)
Q Consensus 282 ADnVGDNVGD~AGmgADLF 300 (771)
.|.|||=-=|-+|+.-+.-
T Consensus 657 GDTVGDPfKDTaGPslNil 675 (697)
T TIGR01104 657 GDTVGDPLKDTSGPSLNIL 675 (697)
T ss_pred CCCCCCCccccccchHhHH
Confidence 9999999999999988754
No 19
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.68 E-value=4.5e+02 Score=26.34 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 004159 197 MGFLLAANGLLVLFIAINL 215 (771)
Q Consensus 197 mGl~vvglgLl~l~~~~~~ 215 (771)
.|+.+.++|++...+.+.+
T Consensus 142 ~~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556667777666555444
No 20
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=35.96 E-value=2.5e+02 Score=33.74 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhheeccccccccCcchhHHhcCCChHHHHHhhhhhhcCCccc
Q 004159 463 VIIPIFAIAVSIFVSFSFAAMYGIAVAALGM-LSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 541 (771)
Q Consensus 463 t~~Pvl~i~~ai~~sy~l~GlyGiAiAa~GM-Lst~~i~la~DayGPIaDNAgGIAEMs~l~~eVR~~td~LDavGNTTa 541 (771)
+++|++.+.+++..++.+.+++|+.+--+.+ ...+.+.+++| + +|--+++.-+|.++-.|.-+|+-++.+
T Consensus 220 ~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~lgi~vd-------~--~ihl~~r~~~~~~~g~~~~~ai~~a~~ 290 (719)
T TIGR00921 220 PLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVGID-------Y--GIQTLNRYEEERDIGRAKGEAIVTAVR 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHhhhhh-------h--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3566777777777777666676653332221 11122333433 3 465565554454444556667777777
Q ss_pred cccchhhHHHHHHHHHHHHHHH
Q 004159 542 AIGKGFAIGSAALVSLALFGAF 563 (771)
Q Consensus 542 Ai~KGfAIGSAaL~aLaLf~ay 563 (771)
-+++... .++++..+=|.++
T Consensus 291 ~~g~~i~--~t~~t~~~gf~~l 310 (719)
T TIGR00921 291 RTGRAVL--IALLTTSAGFAAL 310 (719)
T ss_pred hccHHHH--HHHHHHHHHHHHH
Confidence 7776444 3444444444443
No 21
>PRK01844 hypothetical protein; Provisional
Probab=34.82 E-value=86 Score=28.24 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 004159 12 EILIPVCAVIGIAFALVQWVLVSN 35 (771)
Q Consensus 12 ~~~~~~~~~~gl~~a~~~~~~v~~ 35 (771)
..+++++-++|++.++|.++...+
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455677788888888776554
No 22
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=33.05 E-value=1e+02 Score=36.17 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=52.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHH
Q 004159 588 MLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 661 (771)
Q Consensus 588 mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG 661 (771)
.+-|+|+.+.++.=|-.+.++-|..|+|=..+||+.+| ||--+.+.+..++.++-.-+.-++++++ |-++|
T Consensus 371 ~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpG--k~t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 371 FSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDS--SSMVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45567777777777778889999999999999999988 5555556677777777777777777763 44444
No 23
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=31.87 E-value=1.4e+02 Score=31.58 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHH---Hhhhh---hHHHHHhhHHHHHH
Q 004159 607 KMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG---IFFGV---ETLSGVLAGSLVSG 680 (771)
Q Consensus 607 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG---~~~G~---~al~G~L~G~~vsG 680 (771)
-++|.+||+.|+.+| .+.++++.-++ ||+..|.+...++-++.- +++|. +.++=-+++++++|
T Consensus 170 vv~d~i~e~~~~~~~-------~~~~~a~~~a~----~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~ 238 (246)
T TIGR00966 170 VVFDRIRENLRKYTR-------KTFTEVINLSI----NQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVG 238 (246)
T ss_pred EEehHHHHHHhhccC-------CCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 356888888774322 25667666555 455555554443322110 01222 22444566677777
Q ss_pred HHHHHHh
Q 004159 681 VQIAISA 687 (771)
Q Consensus 681 ~~~Ai~m 687 (771)
.++++|.
T Consensus 239 t~~sl~i 245 (246)
T TIGR00966 239 TYSSIFI 245 (246)
T ss_pred HHHHHHh
Confidence 7777764
No 24
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=31.16 E-value=4.8e+02 Score=29.51 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=43.0
Q ss_pred ChHHHHHHH--------HHHHHHHHHHHHHHHHHHhcCccccccccCcccccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 004159 360 EIEPSLKKQ--------LIISTVLMTVAIAIVSWIALPSSFTIFNFGSQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTS 431 (771)
Q Consensus 360 ~~~~aL~~g--------~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTs 431 (771)
+.+..+.|| ..+|++++...+-++.++++........ + ..-+.+..-+++=++.|.++-...+++++
T Consensus 115 ~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~-~----~m~~~i~~~vllP~~LG~~~r~~~~~~~~ 189 (319)
T COG0385 115 NAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDV-G----GMFLSILLQVLLPFVLGQLLRPLLPKWVE 189 (319)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 4567777777777777777653221100 0 01234555556666666666666666666
Q ss_pred CCCchhHHHHh
Q 004159 432 NAYSPVQDVAD 442 (771)
Q Consensus 432 ~~y~PVr~IA~ 442 (771)
...+....+++
T Consensus 190 ~~~~~l~~vs~ 200 (319)
T COG0385 190 RLKKALPPVSV 200 (319)
T ss_pred HHhhhcchhhH
Confidence 54444444444
No 25
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=29.26 E-value=38 Score=34.10 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.4
Q ss_pred HHHhhhhhhhheeccccccccC
Q 004159 491 LGMLSTIATGLAIDAYGPISDN 512 (771)
Q Consensus 491 ~GMLst~~i~la~DayGPIaDN 512 (771)
++||..+...+--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999984
No 26
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=29.06 E-value=2.6e+02 Score=32.31 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccc---------ccccCCCccCCCccCCcchhhhhhHH
Q 004159 76 IKCAEIQSAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVEG---------FSTKSQACTYDPFKMCKPALATAAFS 146 (771)
Q Consensus 76 ~~m~~Ia~~I~eGA~afL~~qyk~i~~~~v~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (771)
+-.|.+--.+--..--|...+||=+-...+++.+++..+....++ .+..++..+ .+...--+.+
T Consensus 218 ~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR~VyAiGGN~eAA~-------LSGInv~r~t 290 (394)
T COG4214 218 FVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGRRVYAIGGNPEAAR-------LSGINVERVT 290 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeeeEEEEecCCHHHHH-------hcCCceeehh
Confidence 333444333444445688889987766665555554332111111 011111111 1111112356
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhcChhHHHHhhccccchh
Q 004159 147 TVSFLLGGITSVVSGFLGMKIATFANARTTLEARKGVGKAFIVAFRSGAVM 197 (771)
Q Consensus 147 ~~~Fl~Ga~~S~laG~iGM~vat~aNvRta~AA~~~~~~al~vafrgGsVm 197 (771)
...|.. ++.+|..-|+-.+.|-|.-|-.|-...--++..-||-||+.|
T Consensus 291 ~~vF~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 291 LLVFVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 666654 445555666777888888776654444447888899887765
No 27
>PRK08382 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=28.26 E-value=1.9e+02 Score=30.46 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=41.8
Q ss_pred hcCCChHHHHHhhhhhhcCCccccccchhhHH---HHHHHHHHHHHHHHhhhcccccccCChhHHHHHHhhhhHHHHHHH
Q 004159 519 MAGMSHRIRERTDALDAAGNTTAAIGKGFAIG---SAALVSLALFGAFVSRAAISTVDVLTPKVFIGLIVGAMLPYWFSA 595 (771)
Q Consensus 519 Ms~l~~eVR~~td~LDavGNTTaAi~KGfAIG---SAaL~aLaLf~ay~~~~~~~~~~l~~p~vl~GlliG~mlpflFsa 595 (771)
|+.+|++.|++.... .-=|+.+-..++= +. +-.+..+.||.-++--.+ . +.-...++|+++|..+++++.-
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~llLf~~WllLsg--~--~s~~~l~lG~i~~~~v~~l~~~ 74 (201)
T PRK08382 1 MSRMPFYLRERLEEV-KERVLYEIYEAQK-LPPWERFVLTWLILLAFWVIISG--D--LSPRGLILGALTTLIIASYMRD 74 (201)
T ss_pred CCcchHHHHHHHhhc-ccccceeeccccc-CCcchHHHHHHHHHHHHHHHHhC--C--cCHHHHHHHHHHHHHHHHHHHh
Confidence 788999999998776 1112222222111 11 135566666666654322 1 2234678888888888777766
Q ss_pred Hh
Q 004159 596 MT 597 (771)
Q Consensus 596 l~ 597 (771)
+.
T Consensus 75 ~~ 76 (201)
T PRK08382 75 FL 76 (201)
T ss_pred hc
Confidence 53
No 28
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=28.18 E-value=3.3e+02 Score=28.37 Aligned_cols=85 Identities=26% Similarity=0.413 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHhhcccCchhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH----
Q 004159 405 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF---- 480 (771)
Q Consensus 405 ~~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~as~tG~AtnII~Gla~Gm~St~~Pvl~i~~ai~~sy~l---- 480 (771)
|..+|.=.++|.+.+++..+.. .+++....|.+ -.|++.|...|..-+++.+++++.+|..
T Consensus 19 wi~FW~QlvLgvVs~~iL~F~~-~~~~~~~~~~~--------------~~G~~~gl~~a~~gl~~l~~si~~~fry~Rla 83 (183)
T PF12263_consen 19 WIGFWIQLVLGVVSAVILLFAN-LFSGRATSPNR--------------NPGLGIGLFLAICGLVALFFSIFWSFRYTRLA 83 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccccCCCCCc--------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667888888877777653 34443333322 1567888899999999999999999842
Q ss_pred --------------------------HHHHHHHHHHHHHhhhhhhhheec
Q 004159 481 --------------------------AAMYGIAVAALGMLSTIATGLAID 504 (771)
Q Consensus 481 --------------------------~GlyGiAiAa~GMLst~~i~la~D 504 (771)
..+-|+.++-+|+-++.|..++=-
T Consensus 84 r~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~ 133 (183)
T PF12263_consen 84 RRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAKA 133 (183)
T ss_pred HHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 268899999999999999877543
No 29
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=27.92 E-value=4.1e+02 Score=30.53 Aligned_cols=21 Identities=33% Similarity=0.622 Sum_probs=13.9
Q ss_pred cccCChhHHHHHHhhhhHHHH
Q 004159 572 VDVLTPKVFIGLIVGAMLPYW 592 (771)
Q Consensus 572 ~~l~~p~vl~GlliG~mlpfl 592 (771)
--+..|..++|..+|..+=.+
T Consensus 319 GG~f~P~l~iGa~~G~~~g~~ 339 (418)
T PRK01610 319 GGVFTPTLFVGLAIGMLYGRS 339 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHH
Confidence 456678887777777655443
No 30
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=27.72 E-value=1.5e+02 Score=29.02 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=15.7
Q ss_pred ChHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 004159 360 EIEPSLKKQLI--ISTVLMTVAIAIVSWI 386 (771)
Q Consensus 360 ~~~~aL~~g~~--vs~il~~i~~~~~~~~ 386 (771)
...+.+++++. +-.+++++..++..|+
T Consensus 70 ~~~k~~~~qls~v~Nilvsv~~~~~~~~~ 98 (142)
T PF11712_consen 70 QELKSVKRQLSTVFNILVSVFAVFFAGWY 98 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888744 3335555556666664
No 31
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=27.29 E-value=1.7e+02 Score=26.01 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHhHHH----HHHhhhhhhHHHHHHHHHHHHHH
Q 004159 75 VIKCAEIQSAISEGATS----FLFTEYQYVGVFMVAFAILIFLF 114 (771)
Q Consensus 75 ~~~m~~Ia~~I~eGA~a----fL~~qyk~i~~~~v~~~~~l~~~ 114 (771)
+++|++-|+..+..|.. +..+.||+..+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 56666666666666654 55677888777776666655443
No 32
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=26.29 E-value=1.2e+03 Score=28.06 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--cCcccccch---hHHHHHHHHHHHHHHHHHHHhhhcccCCCchhH
Q 004159 364 SLKKQLIISTVLMTVAIAIVSWIALPSSFTIFN--FGSQKVVKN---WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQ 438 (771)
Q Consensus 364 aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~--~g~~~~~~~---~~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr 438 (771)
.=||++..+.+-.++....+....+|+.--+.+ .|... .+. --+....+.-++.|+..|+.+.-|++. |
T Consensus 252 ~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~-~SPf~~gIIpiI~l~F~i~GivYG~~sG~iks~-----~ 325 (502)
T PF03806_consen 252 REKKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLF-PSPFMKGIIPIIFLFFLIPGIVYGIASGTIKSD-----K 325 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCccc-CChHHHhHHHHHHHHHHHHHHHHhhhhceecCH-----H
Confidence 334555555444444344445556675222211 11111 111 123445555666888888888777665 6
Q ss_pred HHHhhcccCchhHHHHHhhhhhhhhH-HHHHHHHHHHHHHH
Q 004159 439 DVADSCRTGAATNVIFGLALGYKSVI-IPIFAIAVSIFVSF 478 (771)
Q Consensus 439 ~IA~as~tG~AtnII~Gla~Gm~St~-~Pvl~i~~ai~~sy 478 (771)
++.+. ++-||++.. .-+++..++-+++|
T Consensus 326 Dv~~~------------M~~~m~~m~~yiVL~F~aaQFia~ 354 (502)
T PF03806_consen 326 DVVKM------------MSKGMKSMAPYIVLAFFAAQFIAY 354 (502)
T ss_pred HHHHH------------HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66553 666664433 22344444445554
No 33
>PRK00523 hypothetical protein; Provisional
Probab=26.24 E-value=1.3e+02 Score=27.10 Aligned_cols=24 Identities=8% Similarity=-0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 004159 12 EILIPVCAVIGIAFALVQWVLVSN 35 (771)
Q Consensus 12 ~~~~~~~~~~gl~~a~~~~~~v~~ 35 (771)
..+++++-++|++.++|.++...+
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~ 31 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFK 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445667777777887776554
No 34
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.19 E-value=66 Score=30.66 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHH-HHHHHHH------HhhhcccCCCchhHHH
Q 004159 405 NWQLFLCVAVGLW-AGLIIGF------VTEYYTSNAYSPVQDV 440 (771)
Q Consensus 405 ~~~~f~~~~~Gl~-~g~lI~~------~TeYyTs~~y~PVr~I 440 (771)
.|.+..+++++.+ .++||.+ +-+|+.||+++|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 4766666665544 7777765 4689999999999876
No 35
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.60 E-value=1.1e+02 Score=26.89 Aligned_cols=32 Identities=25% Similarity=0.592 Sum_probs=23.9
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 004159 579 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLME 624 (771)
Q Consensus 579 vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~e 624 (771)
+++++++|+..-|+++- ...++|++|+|-|-|
T Consensus 3 iilali~G~~~Gff~ar--------------~~~~k~l~~NPpine 34 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR--------------KYMEKQLKENPPINE 34 (64)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCCH
Confidence 57788888888887653 445689999988744
No 36
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=25.56 E-value=67 Score=28.37 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHH
Q 004159 605 ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKIS 638 (771)
Q Consensus 605 A~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~ 638 (771)
.++..||+|+-+||..-++.=..|||.+.-..++
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~~~a 37 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYSKIA 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456677776666655455556789888777666
No 37
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=25.50 E-value=4.1e+02 Score=31.21 Aligned_cols=121 Identities=18% Similarity=0.287 Sum_probs=76.2
Q ss_pred hhhhcCCccccccchhhHHHHHHHHHHHHHHHHhhhcc--------cccccCChhHHHHHHhhhhHHHHHHHHhHHHHHH
Q 004159 532 ALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAI--------STVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGS 603 (771)
Q Consensus 532 ~LDavGNTTaAi~KGfAIGSAaL~aLaLf~ay~~~~~~--------~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~ 603 (771)
|+..+||-.. =-.|+.+.--++++.+...... .-.+..+|...++.++=..+..+|+-+=.+-+.+
T Consensus 263 Kln~agvIPv------Ifassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y~~lii~Fs~Fy~~i~~n 336 (436)
T COG0201 263 KLNYAGVIPV------IFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALYVVLIIFFSYFYTEIQFN 336 (436)
T ss_pred EeeccCChHH------HHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555565543 2236666666666666651111 1134555788888888888888898877666666
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHH
Q 004159 604 AALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGI 662 (771)
Q Consensus 604 aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~ 662 (771)
..|+-|+.|+|=..|||+..|++..+| --++.+|-+.-.-+.-+++++ .|-+++.
T Consensus 337 -p~~~A~~lkksG~~IPGiRpg~~te~y--L~rvi~rlt~~Ga~~l~~iai-lp~l~~~ 391 (436)
T COG0201 337 -PEEIAENLKKSGGFIPGIRPGKDTEKY--LNRVIPRLTFIGALFLGLIAI-LPELLGT 391 (436)
T ss_pred -HHHHHHHHHHcCCcCCCcCCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 889999999999999999987766666 223344444444444444444 3444444
No 38
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.35 E-value=3.2e+02 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCc
Q 004159 409 FLCVAVGLWAGLIIGFVTEYYTSNAYS 435 (771)
Q Consensus 409 f~~~~~Gl~~g~lI~~~TeYyTs~~y~ 435 (771)
++|+.+|++.|++|..+-.|-.|+..+
T Consensus 46 ~~ai~~glvwgl~I~~lDR~ivss~~~ 72 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNLDRFIVSSIRK 72 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999887775443
No 39
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=24.52 E-value=5.2e+02 Score=29.88 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--ccChH----HHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccCcc
Q 004159 327 AMLYPLLISSAGIIVCLITTLFATDIFEIKA--VKEIE----PSLKKQLIISTVLMTVAIAIVSWIALPSSFTIFNFGSQ 400 (771)
Q Consensus 327 ~v~~PLli~a~gi~~siig~~~v~~~~~~~~--~~~~~----~aL~~g~~vs~il~~i~~~~~~~~~l~~~~~~~~~g~~ 400 (771)
.++.|+++..-|=..+...+..+|... .++ .++.. |-+..++..+.++.++... ..+++.. ...+ |
T Consensus 316 ~~~iP~i~~~~Gn~G~qs~~~~~r~l~-~g~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~-~~~~~~~-~~~~---~-- 387 (449)
T TIGR00400 316 ANFIPLLMDTSGNAGSQSSAVVIRGLA-LETVKVKDFFKVILREICVSILVGAILASVNFL-RIVFFQG-KLLI---A-- 387 (449)
T ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHh-cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC-CchH---H--
Confidence 356899888777777776666665432 211 22333 4444455555444444333 3333211 1111 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 004159 401 KVVKNWQLFLCVAVGLWAGLIIGFVTEYY 429 (771)
Q Consensus 401 ~~~~~~~~f~~~~~Gl~~g~lI~~~TeYy 429 (771)
.......+.+++++.+.|.+++++...+
T Consensus 388 -~~v~~~~~~~~~~~~~~G~~lp~~~~k~ 415 (449)
T TIGR00400 388 -FVVSSSLFVSLTVAKILGGLLPIVAKLL 415 (449)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0112346777888888888888888765
No 40
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=23.54 E-value=4.8e+02 Score=31.62 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHhHHH-----HHHhhhhhhHHHHHHHHHHHHHHhhc-cccccccCCCccCCCccCCcchhhhhhHHHH
Q 004159 75 VIKCAEIQSAISEGATS-----FLFTEYQYVGVFMVAFAILIFLFLGS-VEGFSTKSQACTYDPFKMCKPALATAAFSTV 148 (771)
Q Consensus 75 ~~~m~~Ia~~I~eGA~a-----fL~~qyk~i~~~~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (771)
.+|.|||+-.---||.. -+.+|+-.+..+..++++++...+.. .... ...+. . ...+...+
T Consensus 705 ~~R~rEiai~kalGas~~~I~~~~l~E~~~l~~ig~~lg~~l~~~~~~~l~~~-----~~~~~-------~-~~~~~~~~ 771 (803)
T TIGR03434 705 AQRTREIGIRMALGAQRGDVLRLVLRQGLRLAAAGLAIGLAAALALARLLASL-----LFGVS-------P-TDPLTFAA 771 (803)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccCC-------C-CCHHHHHH
Confidence 57888888887777765 56677778877777777766544311 0000 00000 0 01123345
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhH
Q 004159 149 SFLLGGITSVVSGFLGMKIATFANA 173 (771)
Q Consensus 149 ~Fl~Ga~~S~laG~iGM~vat~aNv 173 (771)
++++..+.+.+++++--|-+.|.|-
T Consensus 772 ~~~~~~~i~ll~~~~pa~~a~~~~p 796 (803)
T TIGR03434 772 VAALLLAVALLACYLPARRAARVDP 796 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 5666677778888877777766654
No 41
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=23.46 E-value=7.3e+02 Score=28.59 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhc--------ccccccCChhHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccC
Q 004159 548 AIGSAALVSLALFGAFVSRAA--------ISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTI 619 (771)
Q Consensus 548 AIGSAaL~aLaLf~ay~~~~~--------~~~~~l~~p~vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFrei 619 (771)
=-+|+.+.....++.+..... ...++..+|. +.++=..+.++||-+-.. ++-...|+-|..|+|=..+
T Consensus 257 Ifassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~y~~lii~Fs~f~~~-~~~~p~~iA~~lkk~g~~I 332 (410)
T TIGR00967 257 IFASALLSNPATISQFLNSNQGGAWFLNPILSLSLSDPI---GAILYLILIIFFSFFYVE-LQLNPEDMAKNLKKQGMFI 332 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCcccH---HHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHCCCcC
Confidence 345676666666655532210 0124455663 333336777788777766 8888899999999999999
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHHHhhHHHHH
Q 004159 620 PGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGI 662 (771)
Q Consensus 620 pGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllail~Pi~vG~ 662 (771)
||+..|++..+| --++..+.+.-.-+.-+++++ .|-+++.
T Consensus 333 pGiRpG~~T~~y--L~~~i~~~t~~Gai~l~~ia~-~p~l~~~ 372 (410)
T TIGR00967 333 PGIRPGKMTEKY--LKRVIPRLTFVGSLFLGLIAL-LPNFLGA 372 (410)
T ss_pred CCcCCChhHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999665555 223334444444444444444 3445544
No 42
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.46 E-value=77 Score=30.72 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCch
Q 004159 412 VAVGLWAGLIIGFVTEYYTSNAYSP 436 (771)
Q Consensus 412 ~~~Gl~~g~lI~~~TeYyTs~~y~P 436 (771)
+++|+++|++||++.-.+++.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4678888888888888888776543
No 43
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=22.92 E-value=34 Score=29.16 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.6
Q ss_pred CCCCCcc
Q 004159 273 DDPRNPA 279 (771)
Q Consensus 273 DDPRNPa 279 (771)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6899983
No 44
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.88 E-value=1e+02 Score=30.64 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCch
Q 004159 407 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSP 436 (771)
Q Consensus 407 ~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~P 436 (771)
-.|....+|+++|++||++.--+|-.++|.
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 356788999999999999999998887776
No 45
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.93 E-value=1.1e+02 Score=29.73 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 004159 408 LFLCVAVGLWAGLIIGFVTEYY 429 (771)
Q Consensus 408 ~f~~~~~Gl~~g~lI~~~TeYy 429 (771)
+..=.+.|+++|++|||++++|
T Consensus 48 lssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444
No 46
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=21.92 E-value=5.8e+02 Score=27.94 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=39.5
Q ss_pred HHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHHH--HhhHHHHHhhhhhH---HHHHhhHHHHHHHH
Q 004159 608 MVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVM--LTPLIVGIFFGVET---LSGVLAGSLVSGVQ 682 (771)
Q Consensus 608 mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pgllai--l~Pi~vG~~~G~~a---l~G~L~G~~vsG~~ 682 (771)
+.|.+|++.|+.|+ .|++++++-+.+..++..+.=.+..+ +.|+. ++|.+. ++=.+++.+++|.+
T Consensus 200 v~drire~~~~~~~-------~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~---~~g~~~i~~fa~~l~~Gli~~~~ 269 (289)
T PRK13022 200 VFDRIRENFRKIRR-------KTFAEIINLSINQTLSRTIITSLTTLLVVLALY---LFGGGTLHDFALALLIGIIVGTY 269 (289)
T ss_pred EeeHHHHHHhhccC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchhHHHHHHHHHHHHHHHHH
Confidence 46888888765432 46788887666555554444333322 22222 234332 33345556666666
Q ss_pred HHHHhhccc
Q 004159 683 IAISASNTG 691 (771)
Q Consensus 683 ~Ai~m~NaG 691 (771)
.+++..-.=
T Consensus 270 ~sl~i~p~l 278 (289)
T PRK13022 270 SSIFVASPL 278 (289)
T ss_pred HHHHHHHHH
Confidence 666655443
No 47
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=21.82 E-value=87 Score=34.67 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 004159 597 TMKSVGSAALKMVEEVRRQFNTI 619 (771)
Q Consensus 597 ~m~aVg~aA~~mV~EVRRQFrei 619 (771)
.|.+|.+++..-++|+++|||..
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~ 44 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNR 44 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999999974
No 48
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=20.86 E-value=8e+02 Score=28.13 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHh
Q 004159 407 QLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 442 (771)
Q Consensus 407 ~~f~~~~~Gl~~g~lI~~~TeYyTs~~y~PVr~IA~ 442 (771)
.+..+...|+..-.+.....++|.+. +-.|....
T Consensus 323 ~~l~~y~~~l~~~~l~~ll~r~fya~--~~~~~~~~ 356 (451)
T PF03023_consen 323 SALRIYALGLPFYALNDLLSRVFYAL--GDTKTPVR 356 (451)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc--cCcHhHHH
Confidence 45566777777777777778877654 33444333
No 49
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=20.62 E-value=97 Score=33.43 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=43.5
Q ss_pred HHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhHHHHHHHHHHHhhhcchhhHH
Q 004159 580 FIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALV 653 (771)
Q Consensus 580 l~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~I~T~~AlkeMi~Pglla 653 (771)
+.|.++|- +|++++-+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.+=.
T Consensus 123 l~GMiiGN---------sM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~ins 185 (248)
T TIGR00245 123 LMGMVIGN---------TMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPTVNS 185 (248)
T ss_pred HHHHHHhh---------HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhchHHh
Confidence 45777775 679999999999999999977765544322222 3445555677777777776543
No 50
>PRK00523 hypothetical protein; Provisional
Probab=20.60 E-value=1.6e+02 Score=26.58 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=22.5
Q ss_pred HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 004159 579 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEG 625 (771)
Q Consensus 579 vl~GlliG~mlpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg 625 (771)
+++++++|+..-|+++= ...++|++|+|-|-|-
T Consensus 11 ~i~~li~G~~~Gffiar--------------k~~~k~l~~NPpine~ 43 (72)
T PRK00523 11 GIPLLIVGGIIGYFVSK--------------KMFKKQIRENPPITEN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCcCCCHH
Confidence 45566777766666643 4456999999988553
No 51
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.53 E-value=43 Score=41.07 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=14.1
Q ss_pred CCCCCCCCCccccccc
Q 004159 269 NIPEDDPRNPAVIADN 284 (771)
Q Consensus 269 gIPEDDPRNPavIADn 284 (771)
=|-||||||||=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 3789999999999976
No 52
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=20.50 E-value=1.3e+02 Score=26.47 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 004159 15 IPVCAVIGIAFALVQWVLVSN 35 (771)
Q Consensus 15 ~~~~~~~gl~~a~~~~~~v~~ 35 (771)
++++-++|++.++|.+++..+
T Consensus 3 iilali~G~~~Gff~ar~~~~ 23 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYME 23 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556777777887777665
No 53
>PRK06696 uridine kinase; Validated
Probab=20.46 E-value=39 Score=34.67 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=14.7
Q ss_pred ccccchhccCCCCCCCCCccccc
Q 004159 260 ADLVGKVERNIPEDDPRNPAVIA 282 (771)
Q Consensus 260 ADLVGKVEagIPEDDPRNPavIA 282 (771)
||+| |+.+||+||++++
T Consensus 203 ADiv------i~n~~~~~p~~~~ 219 (223)
T PRK06696 203 ADVV------IDNSDPANPRLLF 219 (223)
T ss_pred CeEE------EECCCCCCCeeec
Confidence 6677 8999999999875
No 54
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.30 E-value=1.5e+02 Score=26.48 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhcc-CCCC
Q 004159 606 LKMVEEVRRQFNT-IPGL 622 (771)
Q Consensus 606 ~~mV~EVRRQFre-ipGi 622 (771)
+++.+|+-||+++ +|.+
T Consensus 8 ~r~L~eiEr~L~~~DP~f 25 (82)
T PF11239_consen 8 QRRLEEIERQLRADDPRF 25 (82)
T ss_pred HHHHHHHHHHHHhcCcHH
Confidence 5788999999964 4544
Done!