Query 004159
Match_columns 771
No_of_seqs 166 out of 730
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 16:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 24.1 10 0.00075 28.6 0.7 9 271-279 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 20.4 14 0.001 27.9 0.8 9 271-279 27-35 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 14.4 21 0.0016 27.4 0.6 9 271-279 35-43 (59)
4 d2iuba2 f.17.3.1 (A:286-349) M 11.7 69 0.005 24.1 2.9 20 741-760 2-21 (64)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.2 44 0.0032 25.9 1.6 25 421-445 10-35 (71)
6 d1jboa_ a.1.1.3 (A:) Phycocyan 11.0 93 0.0068 27.8 4.0 41 598-638 41-88 (162)
7 d3dwya1 a.29.2.1 (A:1084-1197) 10.7 26 0.0019 29.3 0.0 19 694-724 78-96 (114)
8 d3d7ca1 a.29.2.1 (A:731-832) G 10.4 27 0.002 28.6 0.0 30 603-635 5-39 (102)
9 d1oyvi_ g.69.1.1 (I:) Wound-in 9.7 39 0.0028 29.0 0.8 9 271-279 50-58 (116)
10 d1lkta_ b.90.1.1 (A:) Head-bin 8.6 52 0.0038 27.8 1.1 29 251-279 11-39 (104)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=24.15 E-value=10 Score=28.57 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 004159 271 PEDDPRNPA 279 (771)
Q Consensus 271 PEDDPRNPa 279 (771)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 488999994
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=20.40 E-value=14 Score=27.94 Aligned_cols=9 Identities=67% Similarity=1.128 Sum_probs=7.4
Q ss_pred CCCCCCCcc
Q 004159 271 PEDDPRNPA 279 (771)
Q Consensus 271 PEDDPRNPa 279 (771)
-|.|||||-
T Consensus 27 Gesdp~nPK 35 (53)
T d1tiha_ 27 GESDPRNPK 35 (53)
T ss_dssp CCCCSSSSC
T ss_pred CCCCCCCCC
Confidence 488999994
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=14.40 E-value=21 Score=27.42 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.2
Q ss_pred CCCCCCCcc
Q 004159 271 PEDDPRNPA 279 (771)
Q Consensus 271 PEDDPRNPa 279 (771)
-|.|||||-
T Consensus 35 Gesdp~npk 43 (59)
T d1pjua1 35 GESDPKRPN 43 (59)
T ss_dssp CCBBTTBCC
T ss_pred CcCCCCCCC
Confidence 478999994
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.68 E-value=69 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 004159 741 LNILIKLMAVESLVFAPFFA 760 (771)
Q Consensus 741 lniLIKlm~ivslV~ap~~~ 760 (771)
.|-.+|.+++++.+|.|+-.
T Consensus 2 ~N~~mk~lT~it~iflP~t~ 21 (64)
T d2iuba2 2 TNEVMKVLTIIATIFMPLTF 21 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999653
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.19 E-value=44 Score=25.88 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHhhhcccCCCch-hHHHHhhcc
Q 004159 421 IIGFVTEYYTSNAYSP-VQDVADSCR 445 (771)
Q Consensus 421 lI~~~TeYyTs~~y~P-Vr~IA~as~ 445 (771)
+.-++.+||..+.|.| +|||++...
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 3568899999999988 689998764
No 6
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=10.97 E-value=93 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCCCCCC--CCCCC---C-hhHHHHHH
Q 004159 598 MKSVGSAALKMVEEVRRQ-FNTIPGLME--GTAKP---D-YATCVKIS 638 (771)
Q Consensus 598 m~aVg~aA~~mV~EVRRQ-FreipGi~e--g~~kP---D-Y~~cV~I~ 638 (771)
-+.....+.++|+|.+++ |++.|.+.+ |..-| + +++|.+=.
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD~ 88 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARDI 88 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHHH
Confidence 355667789999998888 556898875 33333 2 56776544
No 7
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.68 E-value=26 Score=29.26 Aligned_cols=19 Identities=32% Similarity=0.193 Sum_probs=14.5
Q ss_pred hhhhhHHHhhccccccccCCCCCCccccCcc
Q 004159 694 WDNAKKYIEAGASEHARTLGPKGSDPHKAAV 724 (771)
Q Consensus 694 WDNAKKyIE~G~~~~~~~~ggKGS~aHkAaV 724 (771)
|+||++|- +++|+.|+.|.
T Consensus 78 ~~Na~~yN------------~~~s~~~~~A~ 96 (114)
T d3dwya1 78 FNNAWLYN------------RKTSRVYKFCS 96 (114)
T ss_dssp HHHHHHHS------------CTTSHHHHHHH
T ss_pred HHHHHHHC------------CCCCHHHHHHH
Confidence 99999992 46788887663
No 8
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.43 E-value=27 Score=28.59 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHh-----hccCCCCCCCCCCCChhHHH
Q 004159 603 SAALKMVEEVRRQ-----FNTIPGLMEGTAKPDYATCV 635 (771)
Q Consensus 603 ~aA~~mV~EVRRQ-----FreipGi~eg~~kPDY~~cV 635 (771)
++-.+++++++++ |++-| +-+.-|||.+-|
T Consensus 5 ~~l~~il~~l~~~~~s~~F~~pv---~~~~~pdY~~~I 39 (102)
T d3d7ca1 5 TTLKNLLAQIKSHPSAWPFMEPV---KKSEAPDYYEVI 39 (102)
T ss_dssp HHHHHHHHHHHHSGGGGGGSSCC---CTTTSTTHHHHC
T ss_pred HHHHHHHHHHHhCCCCCccCCCC---ChhhCcCHHHHc
Confidence 3455677777664 65533 345679998855
No 9
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=9.73 E-value=39 Score=29.01 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.1
Q ss_pred CCCCCCCcc
Q 004159 271 PEDDPRNPA 279 (771)
Q Consensus 271 PEDDPRNPa 279 (771)
-|.|||||-
T Consensus 50 Gesdp~nPK 58 (116)
T d1oyvi_ 50 GESDPKRPN 58 (116)
T ss_dssp CCBCSSSCC
T ss_pred CccCCCCCC
Confidence 378999984
No 10
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=8.60 E-value=52 Score=27.84 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=22.8
Q ss_pred cccchhhccccccchhccCCCCCCCCCcc
Q 004159 251 IYTKAADVGADLVGKVERNIPEDDPRNPA 279 (771)
Q Consensus 251 IyTKAADVGADLVGKVEagIPEDDPRNPa 279 (771)
+||-+-.-=++.-||+=-|=..-|||||+
T Consensus 11 ~ftm~r~F~~~~~GKiYIGk~~TDP~~p~ 39 (104)
T d1lkta_ 11 IFTESRSFKAVANGKIYIGQIDTDPVNPA 39 (104)
T ss_dssp CCBCSSSSCBCTTEEEEEESTTSCTTSGG
T ss_pred hhcccHHHHhhcCCcEEEecCCCCCCCcc
Confidence 35555555677789999999999999995
Done!