Query 004160
Match_columns 771
No_of_seqs 80 out of 82
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 18:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 99.6 3.3E-08 7.2E-13 118.5 78.6 112 386-497 672-783 (1179)
2 PRK02224 chromosome segregatio 99.6 4.4E-08 9.5E-13 116.7 78.6 104 453-560 536-639 (880)
3 TIGR02168 SMC_prok_B chromosom 99.6 3.6E-08 7.9E-13 118.2 73.8 139 398-536 677-815 (1179)
4 TIGR02169 SMC_prok_A chromosom 99.6 2.8E-07 6E-12 111.3 75.2 110 391-500 674-783 (1164)
5 PRK02224 chromosome segregatio 99.5 4.1E-07 8.9E-12 108.5 75.0 19 633-651 689-707 (880)
6 PRK03918 chromosome segregatio 99.5 5.7E-07 1.2E-11 106.9 73.2 32 344-375 396-427 (880)
7 TIGR02169 SMC_prok_A chromosom 99.4 2.1E-06 4.7E-11 103.8 76.0 19 55-74 109-127 (1164)
8 TIGR00606 rad50 rad50. This fa 99.4 7E-07 1.5E-11 111.5 68.1 282 346-636 799-1102(1311)
9 PRK03918 chromosome segregatio 99.4 7.1E-07 1.5E-11 106.2 65.2 52 601-652 660-711 (880)
10 KOG0161 Myosin class II heavy 99.4 7.5E-06 1.6E-10 104.3 74.3 315 219-543 1072-1405(1930)
11 PF10174 Cast: RIM-binding pro 99.4 2.9E-06 6.2E-11 101.0 64.2 325 131-506 52-423 (775)
12 TIGR00606 rad50 rad50. This fa 99.4 1E-05 2.2E-10 101.4 76.1 197 445-647 834-1040(1311)
13 COG1196 Smc Chromosome segrega 99.3 1.2E-05 2.7E-10 99.6 79.3 110 232-341 385-494 (1163)
14 PRK01156 chromosome segregatio 99.3 1.4E-05 3.1E-10 96.0 69.3 17 243-259 255-271 (895)
15 KOG0161 Myosin class II heavy 99.3 3.6E-05 7.8E-10 98.4 77.0 148 99-246 1057-1208(1930)
16 COG1196 Smc Chromosome segrega 99.2 9.6E-05 2.1E-09 91.9 70.6 255 13-284 47-342 (1163)
17 PF10174 Cast: RIM-binding pro 99.0 0.00026 5.7E-09 84.7 61.3 242 240-488 110-363 (775)
18 KOG4674 Uncharacterized conser 98.9 0.0015 3.2E-08 83.3 64.2 494 106-663 743-1315(1822)
19 PF05701 WEMBL: Weak chloropla 98.8 0.0007 1.5E-08 78.0 57.3 177 100-290 30-218 (522)
20 PRK01156 chromosome segregatio 98.7 0.0025 5.3E-08 77.1 72.0 32 347-378 417-448 (895)
21 KOG4674 Uncharacterized conser 98.6 0.0081 1.8E-07 77.0 66.9 454 99-559 814-1374(1822)
22 PF00261 Tropomyosin: Tropomyo 98.5 0.00019 4.1E-09 74.6 27.6 18 544-561 172-189 (237)
23 PF12128 DUF3584: Protein of u 98.4 0.021 4.5E-07 72.0 69.8 23 29-51 172-194 (1201)
24 PF00038 Filament: Intermediat 98.3 0.0013 2.8E-08 69.9 30.6 40 605-644 260-299 (312)
25 KOG0250 DNA repair protein RAD 98.3 0.025 5.4E-07 69.5 58.0 203 192-414 186-388 (1074)
26 PF00261 Tropomyosin: Tropomyo 98.3 0.003 6.4E-08 65.8 31.9 218 324-541 4-221 (237)
27 PF07888 CALCOCO1: Calcium bin 98.3 0.011 2.3E-07 68.7 38.2 47 601-647 411-457 (546)
28 PF07888 CALCOCO1: Calcium bin 98.3 0.022 4.7E-07 66.2 46.3 164 179-367 162-325 (546)
29 PRK04863 mukB cell division pr 98.2 0.052 1.1E-06 69.7 53.9 46 285-330 271-316 (1486)
30 KOG0976 Rho/Rac1-interacting s 98.2 0.031 6.6E-07 66.8 45.8 268 238-515 100-398 (1265)
31 KOG0250 DNA repair protein RAD 98.1 0.0076 1.6E-07 73.8 34.7 171 362-533 213-388 (1074)
32 PF00038 Filament: Intermediat 98.1 0.022 4.7E-07 60.7 34.5 51 583-633 252-302 (312)
33 PRK04863 mukB cell division pr 98.1 0.069 1.5E-06 68.7 44.2 173 370-543 293-475 (1486)
34 PHA02562 46 endonuclease subun 98.1 0.0054 1.2E-07 69.9 31.1 9 57-65 34-42 (562)
35 PHA02562 46 endonuclease subun 98.0 0.012 2.5E-07 67.2 32.3 16 10-25 11-27 (562)
36 KOG0996 Structural maintenance 98.0 0.04 8.7E-07 68.1 36.7 302 311-645 267-573 (1293)
37 PF05701 WEMBL: Weak chloropla 97.9 0.092 2E-06 60.9 63.7 90 390-479 287-376 (522)
38 KOG1029 Endocytic adaptor prot 97.9 0.03 6.5E-07 66.7 32.8 216 383-628 394-616 (1118)
39 COG0419 SbcC ATPase involved i 97.9 0.15 3.2E-06 62.6 61.7 46 218-263 391-436 (908)
40 KOG4643 Uncharacterized coiled 97.9 0.15 3.2E-06 62.6 55.3 420 227-664 125-620 (1195)
41 COG0419 SbcC ATPase involved i 97.9 0.15 3.3E-06 62.5 70.0 59 595-657 690-748 (908)
42 KOG0964 Structural maintenance 97.8 0.17 3.6E-06 62.0 37.6 164 336-512 181-344 (1200)
43 PRK04778 septation ring format 97.8 0.16 3.4E-06 59.4 47.5 103 102-206 69-172 (569)
44 PF01576 Myosin_tail_1: Myosin 97.8 5.9E-06 1.3E-10 99.7 0.0 163 112-281 12-189 (859)
45 PRK04778 septation ring format 97.7 0.17 3.7E-06 59.2 44.7 92 271-369 171-272 (569)
46 PF05557 MAD: Mitotic checkpoi 97.7 5.3E-05 1.2E-09 89.8 7.7 49 323-372 283-331 (722)
47 PF01576 Myosin_tail_1: Myosin 97.7 7.1E-06 1.5E-10 99.0 0.0 402 230-651 201-625 (859)
48 PF12128 DUF3584: Protein of u 97.7 0.33 7.3E-06 61.5 66.1 70 544-623 774-853 (1201)
49 KOG0977 Nuclear envelope prote 97.7 0.029 6.2E-07 65.3 28.3 58 600-657 335-392 (546)
50 KOG0612 Rho-associated, coiled 97.7 0.34 7.4E-06 60.6 44.7 248 354-632 582-832 (1317)
51 KOG0977 Nuclear envelope prote 97.7 0.13 2.7E-06 60.1 32.9 87 292-378 69-156 (546)
52 COG1340 Uncharacterized archae 97.6 0.15 3.4E-06 55.4 31.2 72 544-632 175-246 (294)
53 KOG0996 Structural maintenance 97.5 0.51 1.1E-05 59.0 65.9 183 230-422 405-601 (1293)
54 PRK11637 AmiB activator; Provi 97.5 0.19 4.2E-06 56.5 30.9 18 398-415 96-113 (428)
55 PRK11637 AmiB activator; Provi 97.4 0.16 3.5E-06 57.1 29.4 49 386-434 77-125 (428)
56 PF09726 Macoilin: Transmembra 97.4 0.052 1.1E-06 65.1 25.6 110 500-623 542-652 (697)
57 KOG1029 Endocytic adaptor prot 97.4 0.2 4.3E-06 60.1 29.4 189 336-526 362-558 (1118)
58 PF12718 Tropomyosin_1: Tropom 97.4 0.049 1.1E-06 53.3 20.9 131 379-527 9-139 (143)
59 PF12718 Tropomyosin_1: Tropom 97.3 0.068 1.5E-06 52.4 20.8 124 409-536 18-141 (143)
60 COG1579 Zn-ribbon protein, pos 97.3 0.031 6.7E-07 59.2 19.6 52 490-541 90-141 (239)
61 COG1579 Zn-ribbon protein, pos 97.2 0.088 1.9E-06 55.8 22.7 7 372-378 33-39 (239)
62 PF05667 DUF812: Protein of un 97.1 0.61 1.3E-05 55.3 30.7 72 496-579 440-511 (594)
63 KOG0971 Microtubule-associated 97.1 0.99 2.1E-05 55.3 32.2 59 386-444 257-315 (1243)
64 PF05557 MAD: Mitotic checkpoi 97.1 0.0013 2.8E-08 78.2 8.7 239 379-637 387-643 (722)
65 TIGR03185 DNA_S_dndD DNA sulfu 97.0 1.2 2.6E-05 52.9 40.9 98 235-332 207-311 (650)
66 PF05622 HOOK: HOOK protein; 97.0 0.00038 8.2E-09 82.6 3.3 121 316-437 293-416 (713)
67 PF10473 CENP-F_leu_zip: Leuci 97.0 0.13 2.8E-06 50.7 19.3 97 385-481 11-107 (140)
68 PRK11281 hypothetical protein; 96.9 0.46 1E-05 59.9 28.4 65 479-543 196-260 (1113)
69 PRK09039 hypothetical protein; 96.9 0.092 2E-06 58.0 20.2 71 465-535 113-183 (343)
70 KOG0018 Structural maintenance 96.9 2 4.4E-05 53.5 46.6 104 432-535 380-483 (1141)
71 PF06160 EzrA: Septation ring 96.9 1.5 3.2E-05 51.6 43.3 192 500-713 303-497 (560)
72 PF09726 Macoilin: Transmembra 96.9 1.3 2.8E-05 53.6 30.4 19 349-367 491-509 (697)
73 KOG0971 Microtubule-associated 96.8 2.3 4.9E-05 52.4 32.6 248 383-661 230-481 (1243)
74 PRK09039 hypothetical protein; 96.7 0.25 5.3E-06 54.7 21.9 86 472-557 113-199 (343)
75 PF15619 Lebercilin: Ciliary p 96.7 0.63 1.4E-05 48.0 23.1 62 434-495 48-109 (194)
76 PRK10929 putative mechanosensi 96.7 1.3 2.8E-05 56.0 29.7 65 479-543 177-241 (1109)
77 PF10473 CENP-F_leu_zip: Leuci 96.6 0.52 1.1E-05 46.5 20.6 81 401-481 6-86 (140)
78 KOG0963 Transcription factor/C 96.6 2.4 5.3E-05 50.3 36.4 66 314-384 15-80 (629)
79 PF15619 Lebercilin: Ciliary p 96.6 0.46 1E-05 48.9 21.1 139 477-628 49-192 (194)
80 PF14662 CCDC155: Coiled-coil 96.5 1.3 2.9E-05 45.8 25.7 182 365-560 6-191 (193)
81 KOG0980 Actin-binding protein 96.5 2.3 5E-05 52.2 28.5 77 450-526 413-489 (980)
82 PF05667 DUF812: Protein of un 96.4 3.2 7E-05 49.5 33.4 225 335-559 352-589 (594)
83 PF06160 EzrA: Septation ring 96.4 3 6.6E-05 49.1 49.7 362 100-477 63-430 (560)
84 KOG0980 Actin-binding protein 96.3 3.7 8.1E-05 50.5 29.2 16 694-709 797-812 (980)
85 KOG0612 Rho-associated, coiled 96.3 5.4 0.00012 50.6 47.8 140 231-377 495-640 (1317)
86 PF08317 Spc7: Spc7 kinetochor 96.2 0.71 1.5E-05 50.5 21.3 120 320-439 144-264 (325)
87 PF15070 GOLGA2L5: Putative go 96.0 5.1 0.00011 48.0 40.1 53 323-375 6-58 (617)
88 TIGR03185 DNA_S_dndD DNA sulfu 96.0 5.2 0.00011 47.7 37.7 45 322-366 245-289 (650)
89 TIGR01843 type_I_hlyD type I s 95.9 2.6 5.5E-05 46.2 23.8 12 348-359 83-94 (423)
90 COG3883 Uncharacterized protei 95.9 3.4 7.4E-05 44.8 26.1 158 386-543 33-202 (265)
91 KOG0946 ER-Golgi vesicle-tethe 95.7 5.2 0.00011 49.0 26.4 101 314-421 674-774 (970)
92 TIGR01843 type_I_hlyD type I s 95.7 4 8.6E-05 44.7 24.1 27 407-433 146-172 (423)
93 PRK10246 exonuclease subunit S 95.7 9.2 0.0002 48.3 75.4 12 653-664 875-886 (1047)
94 COG3883 Uncharacterized protei 95.7 3 6.4E-05 45.2 22.2 59 582-644 151-209 (265)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 2.3 5.1E-05 40.9 19.7 60 463-525 61-120 (132)
96 KOG4673 Transcription factor T 95.5 8.1 0.00017 46.7 39.1 35 648-692 721-755 (961)
97 COG1340 Uncharacterized archae 95.5 4.9 0.00011 44.1 35.7 205 326-541 28-245 (294)
98 KOG0995 Centromere-associated 95.4 7.7 0.00017 45.9 46.7 171 155-368 215-393 (581)
99 KOG0979 Structural maintenance 95.4 11 0.00023 47.4 28.3 40 385-424 182-221 (1072)
100 TIGR03007 pepcterm_ChnLen poly 95.4 3.8 8.1E-05 46.8 23.5 20 339-358 161-180 (498)
101 PF06008 Laminin_I: Laminin Do 95.4 4.5 9.7E-05 42.9 29.7 57 372-428 26-82 (264)
102 KOG1003 Actin filament-coating 95.4 4.2 9E-05 42.4 25.2 190 406-612 5-198 (205)
103 KOG0946 ER-Golgi vesicle-tethe 95.4 9.2 0.0002 47.0 26.9 17 344-360 641-657 (970)
104 PF12795 MscS_porin: Mechanose 95.3 4.4 9.5E-05 42.4 24.6 64 480-543 155-218 (240)
105 KOG0995 Centromere-associated 95.3 8.8 0.00019 45.5 39.0 16 697-712 537-552 (581)
106 PF08317 Spc7: Spc7 kinetochor 95.2 6.1 0.00013 43.4 25.7 36 337-378 84-119 (325)
107 PF13851 GAS: Growth-arrest sp 95.2 4.5 9.7E-05 41.9 22.2 19 508-526 148-166 (201)
108 smart00787 Spc7 Spc7 kinetocho 95.1 2.6 5.6E-05 46.4 20.2 57 435-491 206-262 (312)
109 PF14662 CCDC155: Coiled-coil 94.9 5.7 0.00012 41.3 27.7 187 328-528 4-190 (193)
110 smart00787 Spc7 Spc7 kinetocho 94.8 7.9 0.00017 42.8 25.3 46 416-461 148-193 (312)
111 PF15070 GOLGA2L5: Putative go 94.8 12 0.00026 44.9 46.2 167 319-496 141-307 (617)
112 PF04156 IncA: IncA protein; 94.7 2.4 5.1E-05 42.4 17.2 42 391-432 81-122 (191)
113 PF05010 TACC: Transforming ac 94.7 6.7 0.00015 41.1 29.2 192 322-529 10-201 (207)
114 COG4942 Membrane-bound metallo 94.6 11 0.00024 43.4 30.4 178 314-495 66-258 (420)
115 PF05911 DUF869: Plant protein 94.5 16 0.00035 45.0 31.5 237 320-561 457-714 (769)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.5 4.1 8.9E-05 39.2 17.6 108 259-369 11-121 (132)
117 TIGR00634 recN DNA repair prot 94.5 11 0.00024 44.3 24.4 100 440-539 266-375 (563)
118 PRK10246 exonuclease subunit S 94.3 21 0.00045 45.3 69.5 35 587-621 823-857 (1047)
119 TIGR01005 eps_transp_fam exopo 94.2 14 0.0003 44.7 25.1 19 313-331 163-181 (754)
120 PF06008 Laminin_I: Laminin Do 94.1 9.2 0.0002 40.6 31.1 20 325-344 28-47 (264)
121 TIGR01000 bacteriocin_acc bact 94.1 9.5 0.00021 43.5 22.4 6 568-573 319-324 (457)
122 PF05010 TACC: Transforming ac 94.1 8.9 0.00019 40.2 22.7 78 544-630 114-191 (207)
123 PF10186 Atg14: UV radiation r 94.0 6.9 0.00015 41.0 19.7 27 742-768 254-280 (302)
124 KOG0994 Extracellular matrix g 94.0 25 0.00054 45.0 38.9 309 197-542 1424-1742(1758)
125 KOG0978 E3 ubiquitin ligase in 94.0 19 0.00042 43.8 53.8 370 97-481 167-572 (698)
126 PF04849 HAP1_N: HAP1 N-termin 93.9 8.2 0.00018 42.7 20.4 24 102-125 60-83 (306)
127 KOG4360 Uncharacterized coiled 93.9 5.6 0.00012 46.6 19.7 136 367-502 163-302 (596)
128 PF09789 DUF2353: Uncharacteri 93.9 11 0.00024 41.9 21.4 23 652-674 272-294 (319)
129 PF08614 ATG16: Autophagy prot 93.8 1.2 2.5E-05 45.4 13.0 106 394-499 70-175 (194)
130 PRK11281 hypothetical protein; 93.5 30 0.00065 44.4 39.3 44 357-400 136-179 (1113)
131 COG4942 Membrane-bound metallo 93.5 18 0.00039 41.7 30.4 92 323-414 15-110 (420)
132 PF05911 DUF869: Plant protein 93.2 19 0.00042 44.3 23.9 224 252-495 534-760 (769)
133 KOG0018 Structural maintenance 93.2 31 0.00068 43.7 58.9 254 122-386 171-449 (1141)
134 COG4372 Uncharacterized protei 93.1 20 0.00042 41.1 30.2 80 383-462 115-194 (499)
135 PF12777 MT: Microtubule-bindi 93.0 17 0.00038 40.2 22.8 96 377-472 214-309 (344)
136 PF09728 Taxilin: Myosin-like 93.0 17 0.00037 40.1 32.0 72 472-543 111-186 (309)
137 PF04111 APG6: Autophagy prote 93.0 1.9 4E-05 47.4 13.9 45 653-707 260-304 (314)
138 PF10146 zf-C4H2: Zinc finger- 92.8 4.4 9.6E-05 43.0 15.8 96 386-481 6-101 (230)
139 PF10186 Atg14: UV radiation r 92.5 15 0.00033 38.4 19.9 85 451-535 60-144 (302)
140 TIGR01005 eps_transp_fam exopo 92.4 28 0.0006 42.2 23.9 23 321-343 201-223 (754)
141 KOG0804 Cytoplasmic Zn-finger 92.3 6.9 0.00015 45.2 17.4 72 357-437 329-400 (493)
142 PF12795 MscS_porin: Mechanose 92.3 16 0.00036 38.2 24.7 37 307-347 14-50 (240)
143 PRK10929 putative mechanosensi 92.1 45 0.00098 42.9 40.9 83 276-369 45-132 (1109)
144 KOG0962 DNA repair protein RAD 92.1 48 0.001 43.1 58.1 123 75-207 546-671 (1294)
145 PF05483 SCP-1: Synaptonemal c 92.0 36 0.00079 41.4 70.1 467 205-706 229-708 (786)
146 PF09728 Taxilin: Myosin-like 91.4 26 0.00057 38.7 38.2 145 461-621 153-307 (309)
147 TIGR00634 recN DNA repair prot 91.3 36 0.00078 40.1 26.2 31 594-624 347-377 (563)
148 PF10498 IFT57: Intra-flagella 91.3 7.9 0.00017 43.6 16.4 65 365-429 186-251 (359)
149 COG4372 Uncharacterized protei 91.2 33 0.00071 39.4 32.3 146 369-514 129-277 (499)
150 KOG0964 Structural maintenance 91.2 52 0.0011 41.7 53.4 62 576-639 677-738 (1200)
151 PF12325 TMF_TATA_bd: TATA ele 91.0 15 0.00032 35.6 15.7 32 492-523 78-109 (120)
152 PF05622 HOOK: HOOK protein; 90.9 0.13 2.9E-06 61.5 2.3 34 526-559 310-343 (713)
153 KOG0976 Rho/Rac1-interacting s 90.6 53 0.0012 40.8 57.0 337 190-543 150-516 (1265)
154 PF13851 GAS: Growth-arrest sp 90.6 23 0.00051 36.7 21.8 53 401-453 30-82 (201)
155 PF04111 APG6: Autophagy prote 90.6 5.8 0.00013 43.7 14.4 17 544-560 116-132 (314)
156 PF09789 DUF2353: Uncharacteri 90.5 33 0.00072 38.3 24.1 33 589-621 199-231 (319)
157 PF14915 CCDC144C: CCDC144C pr 90.4 33 0.00072 38.0 32.5 124 438-561 54-199 (305)
158 KOG0804 Cytoplasmic Zn-finger 89.9 18 0.0004 41.9 17.7 50 413-462 348-397 (493)
159 PF10168 Nup88: Nuclear pore c 89.8 17 0.00036 44.5 18.5 63 368-433 552-614 (717)
160 KOG0999 Microtubule-associated 89.6 53 0.0012 39.3 36.9 29 740-768 567-595 (772)
161 KOG4677 Golgi integral membran 89.6 48 0.001 38.7 28.5 155 375-544 307-465 (554)
162 PF11932 DUF3450: Protein of u 89.5 14 0.0003 39.0 15.6 71 440-513 49-119 (251)
163 PF10498 IFT57: Intra-flagella 89.3 18 0.00039 40.8 17.1 17 545-561 332-348 (359)
164 PF13870 DUF4201: Domain of un 89.3 25 0.00055 35.2 21.2 82 423-504 53-134 (177)
165 PF13870 DUF4201: Domain of un 88.8 27 0.00059 34.9 22.3 121 388-508 10-131 (177)
166 PF10146 zf-C4H2: Zinc finger- 88.8 18 0.00039 38.5 15.8 57 413-469 26-82 (230)
167 KOG4673 Transcription factor T 88.4 71 0.0015 39.2 64.8 405 241-671 471-930 (961)
168 PF11559 ADIP: Afadin- and alp 87.9 28 0.0006 33.9 17.5 77 455-534 74-150 (151)
169 PF06818 Fez1: Fez1; InterPro 87.7 40 0.00087 35.5 20.1 96 383-478 9-104 (202)
170 PRK10869 recombination and rep 87.4 70 0.0015 38.0 26.3 33 509-541 340-372 (553)
171 KOG0962 DNA repair protein RAD 87.3 1.1E+02 0.0024 40.1 59.7 76 333-412 738-813 (1294)
172 TIGR03017 EpsF chain length de 87.3 56 0.0012 36.7 22.5 21 591-611 347-367 (444)
173 PF08581 Tup_N: Tup N-terminal 87.2 9.8 0.00021 34.4 10.9 59 318-380 1-59 (79)
174 PF09787 Golgin_A5: Golgin sub 87.1 69 0.0015 37.6 34.2 251 272-544 176-426 (511)
175 PF11559 ADIP: Afadin- and alp 86.8 32 0.0007 33.5 17.6 23 459-481 106-128 (151)
176 PF14915 CCDC144C: CCDC144C pr 86.5 59 0.0013 36.2 30.9 163 390-555 55-228 (305)
177 PF10481 CENP-F_N: Cenp-F N-te 86.3 28 0.00061 38.3 15.5 107 405-532 18-124 (307)
178 COG5185 HEC1 Protein involved 86.0 80 0.0017 37.2 27.4 85 348-439 273-357 (622)
179 KOG1003 Actin filament-coating 85.6 52 0.0011 34.7 25.3 11 548-558 165-175 (205)
180 KOG0933 Structural maintenance 85.5 1.2E+02 0.0026 38.8 65.3 177 503-692 741-922 (1174)
181 PF09738 DUF2051: Double stran 85.5 19 0.00041 39.8 14.2 99 378-477 72-170 (302)
182 PF09730 BicD: Microtubule-ass 85.3 1.1E+02 0.0023 38.0 42.3 83 355-437 99-181 (717)
183 PF13514 AAA_27: AAA domain 85.2 1.2E+02 0.0027 38.7 64.0 232 174-429 452-711 (1111)
184 PF13166 AAA_13: AAA domain 85.1 93 0.002 37.2 25.8 21 51-74 15-37 (712)
185 PF04849 HAP1_N: HAP1 N-termin 85.0 70 0.0015 35.7 30.0 223 301-526 49-299 (306)
186 PF06818 Fez1: Fez1; InterPro 85.0 55 0.0012 34.5 22.0 89 370-465 17-105 (202)
187 PF10481 CENP-F_N: Cenp-F N-te 84.1 35 0.00076 37.6 15.0 113 446-561 17-129 (307)
188 KOG0978 E3 ubiquitin ligase in 84.0 1.2E+02 0.0025 37.5 62.9 164 57-250 38-208 (698)
189 KOG2196 Nuclear porin [Nuclear 83.8 69 0.0015 34.7 17.8 84 364-447 79-162 (254)
190 KOG1899 LAR transmembrane tyro 83.6 1.2E+02 0.0025 37.2 19.9 38 451-488 171-208 (861)
191 KOG0239 Kinesin (KAR3 subfamil 83.6 1E+02 0.0022 37.8 20.3 41 387-427 171-211 (670)
192 PF00769 ERM: Ezrin/radixin/mo 83.3 69 0.0015 34.3 18.1 10 428-437 35-44 (246)
193 KOG4360 Uncharacterized coiled 83.0 87 0.0019 37.2 18.4 66 444-509 202-267 (596)
194 PF04582 Reo_sigmaC: Reovirus 82.7 2.4 5.3E-05 47.0 6.0 81 428-508 72-152 (326)
195 PF11932 DUF3450: Protein of u 82.7 45 0.00098 35.2 15.2 42 445-486 40-81 (251)
196 PF09730 BicD: Microtubule-ass 82.1 1.4E+02 0.003 37.0 39.0 48 496-543 265-312 (717)
197 PF05335 DUF745: Protein of un 81.6 71 0.0015 33.3 17.4 105 360-464 64-168 (188)
198 COG2433 Uncharacterized conser 81.5 26 0.00056 42.1 13.9 21 325-345 342-362 (652)
199 COG4026 Uncharacterized protei 81.4 30 0.00065 37.1 13.0 62 463-524 144-205 (290)
200 COG4477 EzrA Negative regulato 81.4 1.3E+02 0.0028 36.1 45.3 132 112-255 79-215 (570)
201 COG2433 Uncharacterized conser 81.2 31 0.00068 41.5 14.4 32 404-435 428-459 (652)
202 PF10212 TTKRSYEDQ: Predicted 81.2 1.3E+02 0.0028 35.9 20.5 95 440-537 420-514 (518)
203 PF00769 ERM: Ezrin/radixin/mo 80.4 87 0.0019 33.5 18.3 7 585-591 174-180 (246)
204 PF09738 DUF2051: Double stran 79.9 42 0.00092 37.2 14.2 92 428-526 79-170 (302)
205 TIGR03017 EpsF chain length de 79.8 1.1E+02 0.0024 34.4 24.0 50 307-358 134-183 (444)
206 KOG0239 Kinesin (KAR3 subfamil 79.8 1.4E+02 0.0031 36.6 19.7 13 545-557 304-316 (670)
207 PF12777 MT: Microtubule-bindi 79.7 1.1E+02 0.0023 34.1 21.3 51 275-328 78-128 (344)
208 PF09304 Cortex-I_coil: Cortex 78.6 65 0.0014 31.0 15.7 17 404-420 15-31 (107)
209 KOG0243 Kinesin-like protein [ 78.2 2.1E+02 0.0046 36.8 35.9 63 379-441 450-512 (1041)
210 cd00632 Prefoldin_beta Prefold 78.1 19 0.00042 33.2 9.5 39 582-620 66-104 (105)
211 PRK10869 recombination and rep 76.9 1.7E+02 0.0037 34.9 26.6 32 591-622 339-370 (553)
212 KOG0249 LAR-interacting protei 76.5 1.2E+02 0.0026 37.6 17.3 49 386-434 37-85 (916)
213 COG4026 Uncharacterized protei 76.4 63 0.0014 34.8 13.6 77 456-539 130-206 (290)
214 KOG0243 Kinesin-like protein [ 76.3 2.4E+02 0.0052 36.4 45.6 138 201-344 410-555 (1041)
215 KOG0249 LAR-interacting protei 76.3 1.6E+02 0.0036 36.4 18.3 150 342-502 108-257 (916)
216 KOG4809 Rab6 GTPase-interactin 75.5 1.9E+02 0.0042 34.8 24.3 41 576-622 517-557 (654)
217 PF04012 PspA_IM30: PspA/IM30 74.6 1.1E+02 0.0023 31.5 21.9 10 316-325 3-12 (221)
218 PF10234 Cluap1: Clusterin-ass 74.4 84 0.0018 34.4 14.4 87 463-552 171-257 (267)
219 KOG4809 Rab6 GTPase-interactin 73.7 2.1E+02 0.0046 34.5 29.1 46 391-436 236-281 (654)
220 PRK09841 cryptic autophosphory 73.5 1.1E+02 0.0023 37.5 16.6 39 396-434 258-296 (726)
221 PF05278 PEARLI-4: Arabidopsis 73.1 1.5E+02 0.0032 32.7 15.7 69 441-509 194-262 (269)
222 PF07889 DUF1664: Protein of u 72.3 60 0.0013 31.8 11.5 58 459-516 66-123 (126)
223 PF05278 PEARLI-4: Arabidopsis 72.0 1E+02 0.0022 33.9 14.2 26 365-390 154-179 (269)
224 PF09304 Cortex-I_coil: Cortex 71.9 98 0.0021 29.8 15.5 15 411-425 15-29 (107)
225 PF02994 Transposase_22: L1 tr 71.1 8.6 0.00019 43.2 6.3 18 526-543 181-198 (370)
226 PF02994 Transposase_22: L1 tr 71.0 13 0.00029 41.7 7.8 30 497-526 145-174 (370)
227 PRK09841 cryptic autophosphory 71.0 1.9E+02 0.0042 35.4 17.9 25 388-412 271-295 (726)
228 PRK12704 phosphodiesterase; Pr 70.6 2.3E+02 0.005 33.7 22.7 14 626-639 315-328 (520)
229 PF10205 KLRAQ: Predicted coil 70.4 80 0.0017 30.1 11.4 68 404-471 4-71 (102)
230 KOG0982 Centrosomal protein Nu 69.6 2.3E+02 0.0051 33.2 18.0 65 368-432 288-352 (502)
231 PRK10361 DNA recombination pro 69.5 2.4E+02 0.0052 33.4 26.7 14 439-452 112-125 (475)
232 KOG1962 B-cell receptor-associ 69.5 62 0.0014 34.4 11.7 7 453-459 192-198 (216)
233 PRK10698 phage shock protein P 68.9 1.6E+02 0.0035 31.1 24.9 50 360-412 24-73 (222)
234 PF05384 DegS: Sensor protein 68.9 1.4E+02 0.003 30.4 21.6 126 404-535 26-151 (159)
235 KOG4302 Microtubule-associated 68.9 2.9E+02 0.0063 34.1 22.5 29 605-633 245-273 (660)
236 PRK11519 tyrosine kinase; Prov 68.7 2.6E+02 0.0057 34.2 18.4 11 709-719 555-565 (719)
237 PF05483 SCP-1: Synaptonemal c 68.6 3E+02 0.0065 34.1 67.1 14 61-74 72-85 (786)
238 KOG1853 LIS1-interacting prote 67.5 2E+02 0.0044 31.7 19.1 79 479-560 49-127 (333)
239 PRK00106 hypothetical protein; 67.1 2.8E+02 0.0061 33.3 22.7 17 623-639 327-343 (535)
240 PF14197 Cep57_CLD_2: Centroso 66.8 64 0.0014 28.4 9.5 57 448-511 6-62 (69)
241 TIGR02338 gimC_beta prefoldin, 66.8 69 0.0015 30.0 10.3 42 576-619 66-107 (110)
242 PF14073 Cep57_CLD: Centrosome 66.3 1.7E+02 0.0037 30.5 21.9 103 435-537 66-168 (178)
243 KOG2196 Nuclear porin [Nuclear 66.1 2.1E+02 0.0045 31.3 17.1 118 428-561 80-198 (254)
244 PRK11519 tyrosine kinase; Prov 65.7 2.5E+02 0.0054 34.4 17.4 29 405-433 267-295 (719)
245 COG1842 PspA Phage shock prote 65.6 1.9E+02 0.0042 30.8 22.9 42 392-433 32-73 (225)
246 PRK09343 prefoldin subunit bet 65.3 92 0.002 29.9 11.1 40 582-621 74-113 (121)
247 TIGR03319 YmdA_YtgF conserved 65.0 3E+02 0.0064 32.8 22.8 16 625-640 308-323 (514)
248 PF05384 DegS: Sensor protein 64.7 1.7E+02 0.0037 29.8 22.0 61 483-543 85-145 (159)
249 PRK15422 septal ring assembly 63.9 1.1E+02 0.0024 28.0 10.5 67 415-481 7-73 (79)
250 PF06785 UPF0242: Uncharacteri 63.6 2.7E+02 0.0059 31.8 20.6 81 411-491 91-171 (401)
251 PF12329 TMF_DNA_bd: TATA elem 63.6 1.1E+02 0.0023 27.3 10.3 14 407-420 7-20 (74)
252 KOG0963 Transcription factor/C 62.7 3.6E+02 0.0078 33.0 39.8 189 182-389 16-225 (629)
253 PF15066 CAGE1: Cancer-associa 62.5 3.3E+02 0.0071 32.4 27.1 57 537-616 452-508 (527)
254 PF15066 CAGE1: Cancer-associa 62.0 3.3E+02 0.0072 32.3 22.4 60 495-554 382-442 (527)
255 PF02403 Seryl_tRNA_N: Seryl-t 61.9 77 0.0017 29.1 9.6 31 491-521 69-99 (108)
256 PF08647 BRE1: BRE1 E3 ubiquit 61.9 1.3E+02 0.0029 27.7 13.7 78 433-517 3-80 (96)
257 PF04012 PspA_IM30: PspA/IM30 60.7 2.1E+02 0.0045 29.5 24.6 16 323-338 32-47 (221)
258 PF13863 DUF4200: Domain of un 60.5 1.5E+02 0.0032 27.8 18.3 59 441-499 47-105 (126)
259 COG3096 MukB Uncharacterized p 60.0 4.5E+02 0.0098 33.2 30.5 146 508-657 989-1146(1480)
260 PF05335 DUF745: Protein of un 58.6 2.4E+02 0.0051 29.5 17.4 51 370-420 53-103 (188)
261 KOG1937 Uncharacterized conser 57.9 3.9E+02 0.0084 31.8 29.9 37 82-118 72-108 (521)
262 PF01920 Prefoldin_2: Prefoldi 57.8 1.1E+02 0.0023 27.5 9.6 94 526-624 7-100 (106)
263 PF10212 TTKRSYEDQ: Predicted 56.8 3.5E+02 0.0077 32.4 15.8 90 451-543 417-506 (518)
264 PF15290 Syntaphilin: Golgi-lo 56.6 2.9E+02 0.0062 30.9 14.0 108 437-554 65-172 (305)
265 PF08647 BRE1: BRE1 E3 ubiquit 55.9 1.7E+02 0.0037 27.0 13.1 40 398-437 24-63 (96)
266 cd00890 Prefoldin Prefoldin is 55.8 1E+02 0.0022 28.6 9.5 41 514-554 3-43 (129)
267 PF01920 Prefoldin_2: Prefoldi 55.5 51 0.0011 29.5 7.2 36 582-617 65-100 (106)
268 KOG0979 Structural maintenance 55.0 5.9E+02 0.013 33.0 49.6 53 598-656 861-913 (1072)
269 KOG1962 B-cell receptor-associ 54.6 1.3E+02 0.0029 32.1 10.9 46 397-442 150-195 (216)
270 PF15397 DUF4618: Domain of un 54.3 3.3E+02 0.0072 29.9 21.6 51 320-370 62-112 (258)
271 KOG4593 Mitotic checkpoint pro 53.6 5.3E+02 0.012 32.1 59.3 170 484-674 379-548 (716)
272 KOG2991 Splicing regulator [RN 52.6 3.7E+02 0.0079 29.9 23.5 61 596-656 253-313 (330)
273 PF04102 SlyX: SlyX; InterPro 52.5 77 0.0017 27.6 7.5 51 459-509 2-52 (69)
274 PRK02119 hypothetical protein; 52.0 92 0.002 27.7 7.9 50 458-507 6-55 (73)
275 PF15397 DUF4618: Domain of un 51.7 3.6E+02 0.0079 29.6 26.4 87 463-559 76-167 (258)
276 PF02050 FliJ: Flagellar FliJ 51.2 1.8E+02 0.0038 25.8 16.9 49 459-507 50-98 (123)
277 PF06785 UPF0242: Uncharacteri 50.6 4.4E+02 0.0095 30.2 19.9 143 350-499 72-218 (401)
278 KOG3647 Predicted coiled-coil 50.5 2.9E+02 0.0062 30.8 12.7 77 466-545 117-193 (338)
279 PF10267 Tmemb_cc2: Predicted 50.2 4.7E+02 0.01 30.4 16.5 18 231-248 34-51 (395)
280 KOG3647 Predicted coiled-coil 50.1 3.8E+02 0.0082 29.9 13.6 65 374-438 116-180 (338)
281 KOG0288 WD40 repeat protein Ti 49.5 5E+02 0.011 30.5 17.3 44 428-471 29-72 (459)
282 KOG4302 Microtubule-associated 49.5 6E+02 0.013 31.5 19.0 97 334-437 46-142 (660)
283 TIGR02894 DNA_bind_RsfA transc 49.4 3.1E+02 0.0067 28.2 12.1 128 294-430 11-143 (161)
284 PF04728 LPP: Lipoprotein leuc 49.2 1.5E+02 0.0033 25.5 8.4 47 448-494 4-50 (56)
285 KOG0982 Centrosomal protein Nu 49.0 5.2E+02 0.011 30.6 27.7 33 396-428 302-334 (502)
286 TIGR01069 mutS2 MutS2 family p 49.0 3.4E+02 0.0074 33.8 14.9 95 145-255 496-590 (771)
287 COG3074 Uncharacterized protei 49.0 2.1E+02 0.0045 26.0 9.9 16 463-478 27-42 (79)
288 KOG4657 Uncharacterized conser 48.9 3.9E+02 0.0084 29.1 19.7 19 354-372 20-38 (246)
289 PF05266 DUF724: Protein of un 48.7 3.3E+02 0.0073 28.3 14.1 58 378-435 118-175 (190)
290 PF06005 DUF904: Protein of un 48.7 2E+02 0.0043 25.7 11.1 26 395-420 8-33 (72)
291 KOG2751 Beclin-like protein [S 48.6 5.2E+02 0.011 30.5 15.5 69 493-561 194-266 (447)
292 PRK02793 phi X174 lysis protei 48.4 1.1E+02 0.0023 27.1 7.8 50 459-508 6-55 (72)
293 PF06705 SF-assemblin: SF-asse 47.8 3.7E+02 0.0079 28.5 30.6 57 583-639 179-236 (247)
294 PF03148 Tektin: Tektin family 47.7 4.7E+02 0.01 29.7 27.9 60 582-641 247-306 (384)
295 PRK04406 hypothetical protein; 47.5 1.3E+02 0.0029 26.9 8.3 49 459-507 9-57 (75)
296 PRK00295 hypothetical protein; 47.1 1.2E+02 0.0027 26.5 7.9 49 460-508 4-52 (68)
297 PRK10476 multidrug resistance 47.0 4.2E+02 0.0092 29.0 16.4 6 568-573 211-216 (346)
298 KOG3091 Nuclear pore complex, 46.7 5.9E+02 0.013 30.5 17.4 110 443-559 337-446 (508)
299 KOG4657 Uncharacterized conser 46.4 4.2E+02 0.0092 28.8 15.8 76 448-523 52-127 (246)
300 PF07798 DUF1640: Protein of u 46.3 3.3E+02 0.0071 27.5 16.8 6 406-411 59-64 (177)
301 PF09787 Golgin_A5: Golgin sub 46.2 5.6E+02 0.012 30.2 35.0 74 323-399 276-352 (511)
302 KOG2264 Exostosin EXT1L [Signa 46.0 1.6E+02 0.0034 35.7 10.7 12 653-664 254-265 (907)
303 PRK04325 hypothetical protein; 45.8 1.3E+02 0.0029 26.7 8.0 50 459-508 7-56 (74)
304 PRK00736 hypothetical protein; 45.2 1.2E+02 0.0026 26.6 7.5 47 461-507 5-51 (68)
305 TIGR02680 conserved hypothetic 45.0 9E+02 0.02 32.2 59.6 92 132-224 223-319 (1353)
306 PF05546 She9_MDM33: She9 / Md 45.0 1.9E+02 0.0042 30.7 10.3 99 585-697 31-129 (207)
307 KOG2264 Exostosin EXT1L [Signa 44.9 1.6E+02 0.0034 35.7 10.5 17 506-522 131-147 (907)
308 KOG4643 Uncharacterized coiled 44.1 8.6E+02 0.019 31.8 53.9 352 94-482 163-558 (1195)
309 PF10267 Tmemb_cc2: Predicted 44.1 5.7E+02 0.012 29.7 16.4 24 389-412 217-240 (395)
310 PRK10803 tol-pal system protei 43.6 1.5E+02 0.0033 31.9 9.7 24 500-523 65-88 (263)
311 PF08581 Tup_N: Tup N-terminal 43.1 2.6E+02 0.0056 25.4 11.6 55 413-467 5-59 (79)
312 KOG4460 Nuclear pore complex, 42.7 7.2E+02 0.016 30.4 16.5 36 399-434 603-638 (741)
313 KOG1937 Uncharacterized conser 42.6 6.6E+02 0.014 30.0 32.6 18 87-104 105-122 (521)
314 PF15290 Syntaphilin: Golgi-lo 42.6 5.3E+02 0.012 28.9 15.0 94 476-585 69-169 (305)
315 KOG2010 Double stranded RNA bi 42.4 2.5E+02 0.0055 31.9 11.1 87 393-479 121-207 (405)
316 PF07851 TMPIT: TMPIT-like pro 42.3 3.2E+02 0.0069 31.0 12.0 54 448-501 5-58 (330)
317 COG5185 HEC1 Protein involved 41.8 6.9E+02 0.015 30.0 35.1 89 317-416 274-362 (622)
318 KOG1853 LIS1-interacting prote 41.6 5.3E+02 0.012 28.6 21.8 25 479-503 137-161 (333)
319 PF04949 Transcrip_act: Transc 41.5 4.1E+02 0.0089 27.2 16.5 49 495-543 83-131 (159)
320 KOG2991 Splicing regulator [RN 41.3 5.4E+02 0.012 28.6 25.0 175 354-540 94-294 (330)
321 PF11570 E2R135: Coiled-coil r 41.0 3.9E+02 0.0084 26.8 13.2 43 459-501 82-124 (136)
322 PRK10361 DNA recombination pro 40.4 7.1E+02 0.015 29.7 24.9 14 606-619 281-294 (475)
323 PRK00409 recombination and DNA 40.0 8.6E+02 0.019 30.5 17.2 13 700-712 747-759 (782)
324 KOG0972 Huntingtin interacting 39.6 6.1E+02 0.013 28.7 13.3 106 451-559 217-326 (384)
325 PRK15178 Vi polysaccharide exp 39.1 5.7E+02 0.012 30.0 13.8 30 514-543 355-384 (434)
326 PF09177 Syntaxin-6_N: Syntaxi 38.5 2.6E+02 0.0056 25.5 9.0 62 98-159 36-97 (97)
327 KOG1850 Myosin-like coiled-coi 38.3 6.6E+02 0.014 28.8 32.3 170 366-543 11-183 (391)
328 PF07200 Mod_r: Modifier of ru 37.9 2.7E+02 0.0059 27.0 9.6 59 477-535 36-94 (150)
329 PRK02119 hypothetical protein; 37.9 2E+02 0.0044 25.5 7.9 46 473-518 7-52 (73)
330 PRK00846 hypothetical protein; 37.2 2.3E+02 0.0049 25.8 8.1 43 461-503 13-55 (77)
331 PF07989 Microtub_assoc: Micro 36.8 2.8E+02 0.006 24.9 8.6 24 385-408 8-31 (75)
332 PF03962 Mnd1: Mnd1 family; I 36.0 5.1E+02 0.011 26.8 14.5 9 296-304 15-23 (188)
333 COG3352 FlaC Putative archaeal 35.4 2.4E+02 0.0052 28.8 8.8 46 516-561 85-135 (157)
334 PF14282 FlxA: FlxA-like prote 35.2 2.4E+02 0.0053 26.5 8.5 24 496-519 51-74 (106)
335 PF08172 CASP_C: CASP C termin 34.9 2.8E+02 0.006 30.1 9.9 46 449-494 81-126 (248)
336 PF11180 DUF2968: Protein of u 34.7 5.8E+02 0.013 27.0 13.6 20 441-460 120-139 (192)
337 TIGR00293 prefoldin, archaeal 34.7 2.4E+02 0.0052 26.5 8.5 29 584-612 91-119 (126)
338 PRK10698 phage shock protein P 34.6 5.8E+02 0.013 27.0 26.8 43 318-360 28-73 (222)
339 TIGR01069 mutS2 MutS2 family p 33.2 1.1E+03 0.023 29.7 16.0 13 700-712 736-748 (771)
340 KOG0240 Kinesin (SMY1 subfamil 33.2 9.9E+02 0.021 29.3 23.5 58 306-373 315-372 (607)
341 KOG2629 Peroxisomal membrane a 33.1 4.1E+02 0.0089 29.8 10.8 70 402-474 119-188 (300)
342 PF04102 SlyX: SlyX; InterPro 33.0 2.3E+02 0.0051 24.7 7.4 43 476-518 5-47 (69)
343 cd07666 BAR_SNX7 The Bin/Amphi 32.3 6.8E+02 0.015 27.1 17.7 75 297-374 75-153 (243)
344 PF14739 DUF4472: Domain of un 32.1 4.8E+02 0.01 25.3 11.5 90 372-465 12-102 (108)
345 PF10211 Ax_dynein_light: Axon 32.0 5.9E+02 0.013 26.3 12.7 36 457-492 123-158 (189)
346 PF10234 Cluap1: Clusterin-ass 31.9 7.4E+02 0.016 27.4 19.3 141 260-425 59-217 (267)
347 PF05266 DUF724: Protein of un 31.6 6.2E+02 0.013 26.4 16.8 11 362-372 68-78 (190)
348 PF05531 NPV_P10: Nucleopolyhe 31.4 2.9E+02 0.0064 25.1 7.8 8 487-494 16-23 (75)
349 TIGR03495 phage_LysB phage lys 31.3 5.4E+02 0.012 25.7 11.5 63 396-458 31-93 (135)
350 TIGR03545 conserved hypothetic 30.9 4.3E+02 0.0093 31.9 11.5 51 311-361 209-259 (555)
351 TIGR00414 serS seryl-tRNA synt 30.5 4.9E+02 0.011 30.0 11.6 22 692-713 295-316 (418)
352 KOG0992 Uncharacterized conser 30.5 1.1E+03 0.023 28.8 38.5 51 290-341 78-128 (613)
353 PF02403 Seryl_tRNA_N: Seryl-t 30.5 4.3E+02 0.0093 24.2 10.6 29 498-526 69-97 (108)
354 TIGR02977 phageshock_pspA phag 30.4 6.5E+02 0.014 26.3 26.0 45 296-340 5-50 (219)
355 KOG2010 Double stranded RNA bi 30.3 5.1E+02 0.011 29.6 11.1 85 444-528 123-207 (405)
356 TIGR03752 conj_TIGR03752 integ 30.2 6.1E+02 0.013 30.2 12.2 25 629-661 249-273 (472)
357 KOG4637 Adaptor for phosphoino 30.1 9.5E+02 0.021 28.1 19.8 64 364-427 140-203 (464)
358 PRK00295 hypothetical protein; 29.9 3.4E+02 0.0074 23.8 7.9 46 475-520 5-50 (68)
359 KOG0933 Structural maintenance 29.6 1.4E+03 0.031 30.0 69.4 192 365-559 672-882 (1174)
360 TIGR00293 prefoldin, archaeal 29.6 4.8E+02 0.01 24.5 11.7 37 498-534 88-124 (126)
361 PF10046 BLOC1_2: Biogenesis o 29.4 4.6E+02 0.01 24.3 13.1 29 492-520 69-97 (99)
362 PRK00846 hypothetical protein; 29.1 4.5E+02 0.0097 24.0 8.8 49 473-521 11-59 (77)
363 KOG0994 Extracellular matrix g 29.1 1.6E+03 0.034 30.3 54.4 137 99-238 1227-1374(1758)
364 PRK00736 hypothetical protein; 28.4 3.3E+02 0.0072 23.8 7.6 45 475-519 5-49 (68)
365 TIGR03752 conj_TIGR03752 integ 28.3 6.1E+02 0.013 30.2 11.8 44 441-484 60-103 (472)
366 PLN03229 acetyl-coenzyme A car 28.1 1.3E+03 0.029 29.1 21.9 18 105-122 98-115 (762)
367 PF06810 Phage_GP20: Phage min 28.1 4.9E+02 0.011 26.2 9.8 9 427-435 28-36 (155)
368 KOG4593 Mitotic checkpoint pro 28.0 1.3E+03 0.028 29.0 63.0 81 182-262 134-218 (716)
369 PF10224 DUF2205: Predicted co 27.9 4.3E+02 0.0093 24.2 8.4 48 470-517 18-65 (80)
370 PF15369 KIAA1328: Uncharacter 27.8 8.4E+02 0.018 27.8 12.2 57 464-520 29-85 (328)
371 PF13094 CENP-Q: CENP-Q, a CEN 27.6 5E+02 0.011 25.7 9.7 59 390-448 26-84 (160)
372 TIGR02680 conserved hypothetic 27.2 1.6E+03 0.035 29.9 62.3 99 127-225 271-384 (1353)
373 PF12004 DUF3498: Domain of un 27.0 21 0.00046 42.0 0.0 70 617-698 422-492 (495)
374 PRK15178 Vi polysaccharide exp 26.8 1E+03 0.022 28.2 13.2 15 286-300 143-157 (434)
375 PF10018 Med4: Vitamin-D-recep 26.7 1.6E+02 0.0035 30.1 6.2 70 593-665 22-91 (188)
376 PRK02793 phi X174 lysis protei 26.4 4.4E+02 0.0095 23.4 8.1 35 475-509 8-42 (72)
377 COG4487 Uncharacterized protei 26.2 1.1E+03 0.025 27.8 21.8 11 637-647 390-400 (438)
378 PRK05431 seryl-tRNA synthetase 25.9 3.9E+02 0.0085 30.9 9.8 23 691-713 292-314 (425)
379 KOG2751 Beclin-like protein [S 25.6 1.2E+03 0.025 27.7 15.4 117 412-530 143-259 (447)
380 PF04129 Vps52: Vps52 / Sac2 f 25.5 7.5E+02 0.016 29.2 12.2 20 694-713 384-403 (508)
381 PF15456 Uds1: Up-regulated Du 25.5 6.5E+02 0.014 24.7 11.9 28 440-467 81-108 (124)
382 PF07200 Mod_r: Modifier of ru 25.3 6.3E+02 0.014 24.5 15.4 79 353-435 7-85 (150)
383 PF05377 FlaC_arch: Flagella a 24.8 2.6E+02 0.0055 24.1 6.0 14 407-420 9-22 (55)
384 PRK04325 hypothetical protein; 24.7 4.9E+02 0.011 23.2 8.1 20 477-496 11-30 (74)
385 KOG0998 Synaptic vesicle prote 24.6 1.3E+02 0.0028 37.8 6.0 99 445-543 461-559 (847)
386 KOG0244 Kinesin-like protein [ 24.4 1.6E+03 0.035 29.0 15.7 52 372-424 298-349 (913)
387 TIGR01010 BexC_CtrB_KpsE polys 24.2 1E+03 0.022 26.4 17.3 7 320-326 76-82 (362)
388 PF06009 Laminin_II: Laminin D 24.2 24 0.00052 34.3 -0.2 62 477-538 47-111 (138)
389 PRK12705 hypothetical protein; 24.1 1.3E+03 0.028 27.7 16.7 78 239-331 79-156 (508)
390 PF10211 Ax_dynein_light: Axon 23.7 8.3E+02 0.018 25.3 13.0 8 324-331 65-72 (189)
391 COG0497 RecN ATPase involved i 22.8 1.4E+03 0.031 27.8 27.1 42 359-400 139-180 (557)
392 KOG4603 TBP-1 interacting prot 22.7 9.2E+02 0.02 25.4 14.0 31 464-494 119-149 (201)
393 KOG0288 WD40 repeat protein Ti 22.7 1.3E+03 0.029 27.3 18.3 35 390-424 12-46 (459)
394 PF05615 THOC7: Tho complex su 22.7 7E+02 0.015 24.0 13.3 32 456-487 76-107 (139)
395 PF06428 Sec2p: GDP/GTP exchan 22.7 1.2E+02 0.0026 28.7 4.0 31 465-495 12-43 (100)
396 PF15079 DUF4546: Domain of un 22.4 1E+02 0.0023 31.9 3.9 44 606-652 46-89 (205)
397 KOG4403 Cell surface glycoprot 22.3 1.4E+03 0.03 27.4 15.9 18 544-561 393-410 (575)
398 PF10779 XhlA: Haemolysin XhlA 22.3 5.3E+02 0.011 22.5 7.7 37 393-429 8-44 (71)
399 KOG1899 LAR transmembrane tyro 21.9 1.6E+03 0.035 28.0 20.2 17 611-627 278-294 (861)
400 COG0497 RecN ATPase involved i 21.9 1.5E+03 0.033 27.6 24.5 87 463-553 299-387 (557)
401 PF09763 Sec3_C: Exocyst compl 21.7 7.6E+02 0.016 30.1 11.6 9 629-637 247-255 (701)
402 PRK10636 putative ABC transpor 21.7 6E+02 0.013 30.7 10.6 29 491-519 600-628 (638)
403 PF05008 V-SNARE: Vesicle tran 21.3 5.4E+02 0.012 22.2 8.6 30 381-410 22-51 (79)
404 PF02841 GBP_C: Guanylate-bind 21.0 1.1E+03 0.024 25.7 15.3 117 386-502 178-297 (297)
405 PF07989 Microtub_assoc: Micro 21.0 6.1E+02 0.013 22.7 9.6 29 443-471 3-31 (75)
406 PF15134 DUF4570: Domain of un 20.8 7.9E+02 0.017 23.9 9.1 61 347-407 7-68 (109)
407 PRK13729 conjugal transfer pil 20.6 3.8E+02 0.0083 31.8 8.4 27 693-719 369-395 (475)
408 PF04912 Dynamitin: Dynamitin 20.6 1.3E+03 0.027 26.3 19.8 14 544-557 371-384 (388)
409 PF15188 CCDC-167: Coiled-coil 20.5 2.3E+02 0.0049 26.3 5.3 54 594-647 6-62 (85)
410 PF09755 DUF2046: Uncharacteri 20.3 1.3E+03 0.028 26.2 32.0 68 459-526 111-179 (310)
411 KOG2391 Vacuolar sorting prote 20.3 4.8E+02 0.01 29.9 8.7 49 407-455 227-275 (365)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.65 E-value=3.3e-08 Score=118.52 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN 465 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq 465 (771)
+..+..++..++..+..+...+..++..+......+..+...+..++.++..+...+..+...+......+..+...+..
T Consensus 672 ~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~ 751 (1179)
T TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751 (1179)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666655555555555544445555555554444444444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 466 LKSKQASLQLILEEKDFELSNARQMLEELNNE 497 (771)
Q Consensus 466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~E 497 (771)
+...+..+...+..+..++..+...+..+...
T Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 783 (1179)
T TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAE 783 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333333333
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=99.64 E-value=4.4e-08 Score=116.66 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=41.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 453 ESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNE 532 (771)
Q Consensus 453 EnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~E 532 (771)
...+..+..+++.+...+.......+.+...+..+..++.++..+++.+...+..++ ++.++...+..+...+......
T Consensus 536 ~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~ 614 (880)
T PRK02224 536 RERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREK 614 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333334444444444444444444444444444 3444444444333333333333
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 004160 533 LDGTKLKVSEAETVVEQIVDLTHKLVIS 560 (771)
Q Consensus 533 LNe~nIe~sQqEtl~eRIeeLt~eLe~s 560 (771)
+..+.... +.+.+++..+..++...
T Consensus 615 ~~~l~~~~---~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 615 REALAELN---DERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 32222221 24455555555555543
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.61 E-value=3.6e-08 Score=118.19 Aligned_cols=139 Identities=25% Similarity=0.318 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~EL 477 (771)
..+..+...+..++..+......+..+...+..+..++..+...+......+......+..+..+++.+..++..+...+
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 756 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004160 478 EEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGT 536 (771)
Q Consensus 478 EEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~ 536 (771)
..+..++......+..+..++..+...+..+...+..+...+......+..++.++...
T Consensus 757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 815 (1179)
T TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444344444444444444444444444433
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.56 E-value=2.8e-07 Score=111.33 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQ 470 (771)
Q Consensus 391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEI 470 (771)
.++..+...+-.+..++..+...+...+..+..+..++..+...+..+..++..+...+.....++..+...+..+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 753 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160 471 ASLQLILEEKDFELSNARQMLEELNNEVRE 500 (771)
Q Consensus 471 esLq~ELEEIdeELeeiqrrLeeLr~ELkE 500 (771)
..+...+..+..++......+..+..++..
T Consensus 754 ~~~~~el~~l~~~i~~l~~~i~~l~~el~~ 783 (1164)
T TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALND 783 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.54 E-value=4.1e-07 Score=108.48 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=8.3
Q ss_pred HHhhhhhhHHHHHhHHhhh
Q 004160 633 VLGRLDAKEKELKKLEETV 651 (771)
Q Consensus 633 ~~~~~~~~~~el~~~~~~~ 651 (771)
.++.++...++++.++..+
T Consensus 689 ~~e~~~~~~~~~~~~~~~~ 707 (880)
T PRK02224 689 ELEELEELRERREALENRV 707 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=99.52 E-value=5.7e-07 Score=106.93 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160 344 MEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA 375 (771)
Q Consensus 344 ~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a 375 (771)
++.+...+..++.++......+...+..|+..
T Consensus 396 l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~ 427 (880)
T PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKA 427 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555555555555555544
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.45 E-value=2.1e-06 Score=103.75 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=11.1
Q ss_pred CCCCCCCCchHHHHHHHHHH
Q 004160 55 SVNGYGLGEPARILLERLFA 74 (771)
Q Consensus 55 ~~~~~g~~e~ar~llerlf~ 74 (771)
.+--||.+-|.+.+. .+|.
T Consensus 109 ~~~~n~~~~~~~~~~-~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIH-DFLA 127 (1164)
T ss_pred eEEECCccccHHHHH-HHHH
Confidence 345567666776554 4555
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=7e-07 Score=111.54 Aligned_cols=282 Identities=10% Similarity=0.120 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 004160 346 EQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEEL---QNELNKEKYSLQ 422 (771)
Q Consensus 346 ~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeL---r~qLqkekqeLE 422 (771)
.+..-++.|+.+|+..=....+ ..++.+.+.++.....+++.+..++..+.........+|..| ...+...+-.+.
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~-~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDL-DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHhccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555544433222222 236677777777777777777666666666666666666666 233333333333
Q ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 423 QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK 502 (771)
Q Consensus 423 elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK 502 (771)
+.......+..++..+..++.++...+..+..++..+...+..+......+....+....++...-..+...-..+..+.
T Consensus 878 ~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 878 TNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555556666555555555555555555555555544443333222222222111111112222222
Q ss_pred HHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH------HHHHhhhccCc
Q 004160 503 MIMS------------SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDL------THKLVISNKND 564 (771)
Q Consensus 503 slIe------------sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeL------t~eLe~s~~~~ 564 (771)
..+. .++..+..+...+..+...+..+...++.++-.+..+....+.+.++ ..++....
T Consensus 958 ~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~--- 1034 (1311)
T TIGR00606 958 KDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVE--- 1034 (1311)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 2222 12222222233333333333334444444444444442222222222 22223333
Q ss_pred ccCcCCcchHH-hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhh
Q 004160 565 ESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGR 636 (771)
Q Consensus 565 ~~dI~qlkdEI-eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~ 636 (771)
..|..+...+ .... ..+..++..+...++.+......+.+.++.++.+|..++.+++- .+.+.+-.+
T Consensus 1035 -~eI~~l~~~~~~~~~--~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~r 1102 (1311)
T TIGR00606 1035 -EELKQHLKEMGQMQV--LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEK 1102 (1311)
T ss_pred -HHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHH
Confidence 3344444444 4445 56677778888888888888888889999999999999998854 444444443
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=99.45 E-value=7.1e-07 Score=106.16 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhh
Q 004160 601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVE 652 (771)
Q Consensus 601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~ 652 (771)
++..++..+..++..+..+...+......+...-..++..+.++.+++...+
T Consensus 660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~ 711 (880)
T PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444443333333333333333333333444433333
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.40 E-value=7.5e-06 Score=104.31 Aligned_cols=315 Identities=20% Similarity=0.229 Sum_probs=157.2
Q ss_pred HhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 004160 219 AKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKL 298 (771)
Q Consensus 219 ~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l 298 (771)
+...+|+-.-..-+..=+..+.+-.-.+++|++.|.+..++++.....|. |+..+-++|. .++-.-+.+|...
T Consensus 1072 ~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~----K~ek~r~dL~---~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1072 KKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA----KAERQRRDLS---EELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33344444444444444455555566677777777777777765554443 3333333322 2233334444444
Q ss_pred HHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----
Q 004160 299 AEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK----- 373 (771)
Q Consensus 299 ~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~----- 373 (771)
....+-...-.+.--.+|.+.++-| +.+-.....-.+..|+.-.+.-..|..|+..+...+.-+..=-.+|.
T Consensus 1145 ~~~t~~q~e~~~k~e~e~~~l~~~l---eee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1145 GGTTAAQLELNKKREAEVQKLRRDL---EEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444443 33333334444444444444444444444444433333322211111
Q ss_pred ---------HHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 004160 374 ---------DAQVEVESER----VKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNT 440 (771)
Q Consensus 374 ---------~a~~e~~~~~----~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelek 440 (771)
-+....+..+ ..|..++..+.++.+.+..+..+...+.++.......+++....+..+......+..
T Consensus 1222 l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1222 LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 1111222222 223333333444444433344445555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Q 004160 441 EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ-LVQAMDTL 519 (771)
Q Consensus 441 ELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq-LeEleeeL 519 (771)
.+..+...+..-......+...+.+++.+...+.+.+++-.+-...+.+.+..+..+...-+..++..-.+ .+++.+.-
T Consensus 1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~k 1381 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELK 1381 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555566666666666666666666666666666666666666666666666655444 55666666
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 520 QEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 520 kEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
+.+.+.++.++..+...+..+...
T Consensus 1382 k~l~~~lq~~qe~~e~~~~~~~~L 1405 (1930)
T KOG0161|consen 1382 KKLQQRLQELEEQIEAANAKNASL 1405 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 666666666666666655555555
No 11
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.39 E-value=2.9e-06 Score=100.97 Aligned_cols=325 Identities=21% Similarity=0.270 Sum_probs=197.4
Q ss_pred hhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHH---Hh-----------------hhhhHHHHHHhhhhHHHH
Q 004160 131 HSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV---SQ-----------------ARHIEDLKLRLKERDQEI 190 (771)
Q Consensus 131 ~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~---~q-----------------~~~i~~lk~~~~~~~~~~ 190 (771)
.+++..++..|..--.+...+..-.+.|+++| ++..++- .+ -+++.-|.---+....++
T Consensus 52 ~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El 130 (775)
T PF10174_consen 52 AAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQREL 130 (775)
T ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444445555555666666 5544422 11 234444555555666777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHH------HHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH-
Q 004160 191 AAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKA------QMLNEANEVVKKQETEIQSLRKVIQEKEEELEAS- 263 (771)
Q Consensus 191 ~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~------~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~- 263 (771)
+-+++.+-.-+..|+++++.+-+.++++..+-..|.+|+ ---..++..+.-.++.+..|++.+..++......
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r 210 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAR 210 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 788888888888888888888888888888888885442 2224566678888999999999999998877322
Q ss_pred -------------------HHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHH
Q 004160 264 -------------------VALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLS 324 (771)
Q Consensus 264 -------------------~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~ 324 (771)
..+-...+-|++..|-+|++ ++.|+-.|.....-...+...+++. |.
T Consensus 211 ~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~-------le~Ei~~L~~~~~~~~~~r~~~~k~-------le 276 (775)
T PF10174_consen 211 EQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRD-------LEDEIYRLRSRGELSEADRDRLDKQ-------LE 276 (775)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcccccccchHHHHHH-------HH
Confidence 11111133344444444433 4444444433322222222222111 12
Q ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 325 DVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMT-SLKDAQVEVESERVKLRVTEARNKELERDLSME 403 (771)
Q Consensus 325 ~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~-~l~~a~~e~~~~~~~l~~aqsE~kELErqLlql 403 (771)
..+|.. -+|. -+..+..++..+-.++-.++.++..+.+.....
T Consensus 277 ~~~s~~------------------------------------~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~ 320 (775)
T PF10174_consen 277 VYKSHS------------------------------------LAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDM 320 (775)
T ss_pred HHHhhH------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 222222 1221 155666666666667777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE 483 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE 483 (771)
...|..+...+..-++..+.++.++..|..++......+......+.....++..+..++..+++.+......+.-+..+
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777776666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004160 484 LSNARQMLEELNNEVRELKMIMS 506 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIe 506 (771)
|..+...+.....++..++..+.
T Consensus 401 ie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 401 IENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666565555555555
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=1e-05 Score=101.37 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=83.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 445 TENLLRVKESDLVEAKLEIQNLKSKQASLQL---ILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQE 521 (771)
Q Consensus 445 lekeIeelEnELeeLq~eiEqLKsEIesLq~---ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkE 521 (771)
....+..+..++..++...+.++.+|..++. .+.....++...-.....+.+++..++..+..+...+.++...+..
T Consensus 834 ~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~ 913 (1311)
T TIGR00606 834 KQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333334444444444444422 2222233333333344444455555555555555555555555555
Q ss_pred HHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHH---HHhhhccCcccCcCCcchHH-hhHhhhhhhhccchhHHHHHH
Q 004160 522 KDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTH---KLVISNKNDESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTK 596 (771)
Q Consensus 522 kEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~---eLe~s~~~~~~dI~qlkdEI-eeeL~~qeLekereeLeeel~ 596 (771)
....+..++.++..++...... .....++..+.. .|.... ..|..+.+.- ...| ..+......+...+.
T Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~y~~~~~~~qL--~~~e~el~~~~~~ie 987 (1311)
T TIGR00606 914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM----KDIENKIQDGKDDYL--KQKETELNTVNAQLE 987 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHH--HHHHHHHHHHHHHHH
Confidence 5555555555555444333332 122222222221 111111 1221111111 2233 333333334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH--HhhhhhhHHHHHhH
Q 004160 597 QLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTV--LGRLDAKEKELKKL 647 (771)
Q Consensus 597 eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~--~~~~~~~~~el~~~ 647 (771)
.++.++..+...++.+..++...+.........|.-. ...+...+.++..|
T Consensus 988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l 1040 (1311)
T TIGR00606 988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQH 1040 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555554444444444 44445555555555
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.34 E-value=1.2e-05 Score=99.61 Aligned_cols=110 Identities=23% Similarity=0.269 Sum_probs=81.1
Q ss_pred hHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 004160 232 LNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETND 311 (771)
Q Consensus 232 l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~ 311 (771)
+...+..+..-..++..++..|...+..+.+...--.--..++...++.++..-..|-....++..|.+.-..-.+...+
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 464 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKE 464 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556777777777777777777776666777788888888877777778888888888887777777888
Q ss_pred HHHhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004160 312 TLEDFRRVKKLLSDVRSELVSSQKSLASSR 341 (771)
Q Consensus 312 ~~~df~rv~~ll~~vr~el~~s~~~~~~sr 341 (771)
+-.++.++...+.+++.++.+.+..+....
T Consensus 465 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 494 (1163)
T COG1196 465 LERELAELQEELQRLEKELSSLEARLDRLE 494 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888776655543
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=99.30 E-value=1.4e-05 Score=96.00 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004160 243 ETEIQSLRKVIQEKEEE 259 (771)
Q Consensus 243 e~~~~~l~~~~~~ke~~ 259 (771)
+..+++|.+.+.+.+..
T Consensus 255 e~~i~ele~~l~el~~~ 271 (895)
T PRK01156 255 ESEIKTAESDLSMELEK 271 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544443
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.28 E-value=3.6e-05 Score=98.39 Aligned_cols=148 Identities=22% Similarity=0.265 Sum_probs=118.5
Q ss_pred HHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHH
Q 004160 99 LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIED 178 (771)
Q Consensus 99 ~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~ 178 (771)
+..++..-+..-..|++||.+|.....++-..+.-++........-+..|..+....+.-+....++.+....-+.++++
T Consensus 1057 ~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666678999999999999999999999999998888888888888888888888888888888888999999
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHH----HhHHHhHHHHHhHHHH
Q 004160 179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ----MLNEANEVVKKQETEI 246 (771)
Q Consensus 179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~----~l~~an~~~~~qe~~~ 246 (771)
|+..++++...+.+...+=+.++.|+.+|+.++-.....-...-.+++.+-+ -|....+-.++..+.+
T Consensus 1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877666665566654432 3444444444444333
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.16 E-value=9.6e-05 Score=91.86 Aligned_cols=255 Identities=24% Similarity=0.273 Sum_probs=129.1
Q ss_pred cCCCCccccccccCCcceeeccccc-cccc-cchhhhcCCCCCCCC---------------CC-----CCCCchHHHHHH
Q 004160 13 HLNPNPKVHWKHKLPGRYVTSGKRR-VRSL-GLVRAVLPDGKKSSV---------------NG-----YGLGEPARILLE 70 (771)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~sv~~~~~~~~~---------------~~-----~g~~e~ar~lle 70 (771)
+|.-+|..+.|.+..--+.|.+..- +++. ..|.=|+++..+... |+ ||-+-+.+ =+.
T Consensus 47 VLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V~l~fdN~d~~~~~~~~ei~v~Rri~r~g~S~Y~INg~~~~~~-dI~ 125 (1163)
T COG1196 47 VLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEVELTFDNSDNTLPLEYEEISVTRRIYRDGESEYYINGEKVRLK-DIQ 125 (1163)
T ss_pred HhCcchhhhhhccCCcceeeCCCCCCCCCCceEEEEEEeCCCCcCCcccceEEEEEEEEEcCCcEEEECCcEeeHH-HHH
Confidence 4555556667777655555555444 3322 557666766620000 11 44444555 356
Q ss_pred HHHHhhhhhhhhccCCCC--CCc-cc-----ccCchHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH
Q 004160 71 RLFAQTQKLEERMSRDSG--VGK-DV-----QFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL 142 (771)
Q Consensus 71 rlf~~t~~l~~~~~~~~~--l~~-~~-----~~~~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~ 142 (771)
-||+ +.|.+.++. +|- +| ..+.....|=.|.-..+..-+++++ |+ .+|.+|.+-|+
T Consensus 126 ~l~~-----~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~e----a~-------~~L~~~~~nl~ 189 (1163)
T COG1196 126 DLLA-----DSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEE----AE-------RKLERTEENLE 189 (1163)
T ss_pred HHHH-----hcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHH----HH-------HHHHHHHHHHH
Confidence 7888 666666555 221 22 1222233333333333333333332 22 23555555566
Q ss_pred HhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhh----hhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHH
Q 004160 143 RREREIDVACSRHEKLEEELGQSNLKLVSQAR----HIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEA 218 (771)
Q Consensus 143 ~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~----~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~ 218 (771)
+.+..+..-....++|+.+-..|.+.+-.++. +..-+-..+..-..++......++..+.+++.+...+-....+.
T Consensus 190 ~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i 269 (1163)
T COG1196 190 RLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI 269 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555666666666666555444331 11222334455556677777777777777777777777777777
Q ss_pred HhHHHHHhhHHHHhHHHhHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 004160 219 AKIDSELKSKAQMLNEANEV-------VKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKR 284 (771)
Q Consensus 219 ~~~~~e~~~k~~~l~~an~~-------~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~ 284 (771)
...+.++......+.....- +...+.++.-++..+.....++.....-...-..++...++.++..
T Consensus 270 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655554444222 3333444444444444444443333333333344555555555554
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.00 E-value=0.00026 Score=84.68 Aligned_cols=242 Identities=20% Similarity=0.291 Sum_probs=110.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-Hhh--HHhhhHHHhH
Q 004160 240 KKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEAS-RRM--EETNDTLEDF 316 (771)
Q Consensus 240 ~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~-k~~--~~~~~~~~df 316 (771)
-.....+..|+.+..+-.-++..+- .++..++..++++-...-.++.++.+|.+..- +.. ....++-.-+
T Consensus 110 d~~~~q~~rl~~E~er~~~El~~lr-------~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~ 182 (775)
T PF10174_consen 110 DKAQEQFERLQAERERLQRELERLR-------KTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEAL 182 (775)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHH
Confidence 3344445555555444444444432 57788899999999999999999999998541 100 0011111123
Q ss_pred HHHHHH---HHHHHHHHhhhhhHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHH
Q 004160 317 RRVKKL---LSDVRSELVSSQKSLASSRKQMEEQ------EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLR 387 (771)
Q Consensus 317 ~rv~~l---l~~vr~el~~s~~~~~~sr~~~e~q------~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~ 387 (771)
+|+..+ +...++-|----+.....|.++.-. ...-+.=..-|..-=..+.+|..+|.+++.||..=+..+.
T Consensus 183 ~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~ 262 (775)
T PF10174_consen 183 RRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGE 262 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333322 1111111111111111112211111 0000011122233334567777777777777665544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 388 VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLK 467 (771)
Q Consensus 388 ~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLK 467 (771)
.+...-..+...+......-.-+.+.++..+..|.....++..++..+..+.+...+...+|..+...+.....+-+.|+
T Consensus 263 ~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lq 342 (775)
T PF10174_consen 263 LSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQ 342 (775)
T ss_pred ccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333323333333333333333444444444444445555555555555555555555555555555444444444
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 004160 468 SKQASLQLILEEKDFELSNAR 488 (771)
Q Consensus 468 sEIesLq~ELEEIdeELeeiq 488 (771)
+.+..+..++++....+....
T Consensus 343 sdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 343 SDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 18
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.85 E-value=0.0015 Score=83.29 Aligned_cols=494 Identities=20% Similarity=0.235 Sum_probs=259.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH-----------------------------HhHHHHHHHHHhhH
Q 004160 106 LQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL-----------------------------RREREIDVACSRHE 156 (771)
Q Consensus 106 ~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~-----------------------------~re~~i~~a~~~~~ 156 (771)
+++-+..||+--+=|..++.+...|...|-.-+..|- .-++++.++..+.+
T Consensus 743 le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq 822 (1822)
T KOG4674|consen 743 LEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQ 822 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566776666677777777766655544433332 22233333333333
Q ss_pred HHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHh
Q 004160 157 KLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEAN 236 (771)
Q Consensus 157 ~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an 236 (771)
++...+.....++- .++++++-+|++-...+.++...|+.+..++++|.+.+-.=++.+..+.....-..+= .+|
T Consensus 823 ~~~~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~--~~~ 897 (1822)
T KOG4674|consen 823 EKSSDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSK--SSN 897 (1822)
T ss_pred HHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccc--chh
Confidence 33333333333333 2344666677777777777777777777777776665544444333332222211110 224
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhH
Q 004160 237 EVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDF 316 (771)
Q Consensus 237 ~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df 316 (771)
+.+..-.-+++-....+..- .++|+-+..+.+ +++....-.+.. .
T Consensus 898 ~d~~~~~~~Lr~~~eq~~~l--------------~~~L~~a~s~i~-----------~yqe~~~s~eqs----------l 942 (1822)
T KOG4674|consen 898 EDATILEDTLRKELEEITDL--------------KEELTDALSQIR-----------EYQEEYSSLEQS----------L 942 (1822)
T ss_pred hhhhhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHH-----------HHHHHHHHHHHH----------H
Confidence 44443333322111111111 122222222211 222222222222 2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHH-------HHH
Q 004160 317 RRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL-------RVT 389 (771)
Q Consensus 317 ~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l-------~~a 389 (771)
.+|++=|+.+|.++.+....+.-=.-..|+--..|+.+...|.++. ...+.+++.++ ..+
T Consensus 943 ~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-------------~~~~k~~e~~~~~~~~e~~sl 1009 (1822)
T KOG4674|consen 943 ESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL-------------ELSTKGKEDKLLDLSREISSL 1009 (1822)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccccchhhhHHHHHHHhHHH
Confidence 3455666666666666666655544455555556666666666654 22333333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
+.++..+...+.++...+..+++.+.....-+...+.+..+--- .+......+..+..++..+......++..
T Consensus 1010 ~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~-------~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~ 1082 (1822)
T KOG4674|consen 1010 QNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELV-------QHADLTQKLIKLREEFAKCNDELLKLKKS 1082 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555555544333333333222211 22222333333333333333333333333
Q ss_pred HHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH
Q 004160 470 QASLQ-----------LILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ------------LVQAMDTLQEKDEHV 526 (771)
Q Consensus 470 IesLq-----------~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq------------LeEleeeLkEkEE~L 526 (771)
..... .....+..++.....++..+..+...+-.+++.+-.. ..++..=+..+....
T Consensus 1083 ~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ek 1162 (1822)
T KOG4674|consen 1083 RESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEK 1162 (1822)
T ss_pred HHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHH
Confidence 33222 2333455555555666666666666666666555444 334555566666666
Q ss_pred HHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhccCcccCcCCcc----hHH---hhHhhhhhhhccchhHHHHH
Q 004160 527 LILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISNKNDESSTSMPT----DDM---GLELMQQGLDKGNDNFRLQT 595 (771)
Q Consensus 527 ~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~~~~~~dI~qlk----dEI---eeeL~~qeLekereeLeeel 595 (771)
..+..+|+-++.....+ ..+..-|.++...|..+... .+.+-.. ..+ ...+ ..|...--.+++..
T Consensus 1163 ei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~--~q~~a~s~~e~~~i~~~v~~v--Nll~EsN~~LRee~ 1238 (1822)
T KOG4674|consen 1163 EIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERAS--SQKSAVSDDEHKEILEKVEEV--NLLRESNKVLREEN 1238 (1822)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhhhhhhhHHHHHHHHH--HHHHHhHHHHHHHH
Confidence 66666666665555544 56666777777777664411 1111111 122 4455 55666667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH----Hhhh-----hChhhHHHHHHH
Q 004160 596 KQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL----EETV-----EDANDLRKLYAL 663 (771)
Q Consensus 596 ~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~----~~~~-----~d~~d~~~~~~~ 663 (771)
......+.+++..++.+++++.-++..++..+.++-++..-+...+.|-+.. ..++ -||+|+++|-+-
T Consensus 1239 ~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1239 EANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999888887777666665543 3333 268999988763
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.83 E-value=0.0007 Score=77.96 Aligned_cols=177 Identities=27% Similarity=0.326 Sum_probs=90.4
Q ss_pred HHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHH---Hhhhhh
Q 004160 100 EILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV---SQARHI 176 (771)
Q Consensus 100 ~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~---~q~~~i 176 (771)
...+.+|..+-..|.+=.++|..||+.=.-=...|..||.-.+.--..|..+... -..|..+.- .++.+.
T Consensus 30 ~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~-------~~~a~~~~e~~k~r~~e~ 102 (522)
T PF05701_consen 30 KEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAE-------EKQAEEDSELAKFRAKEL 102 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHhHHHHHHH
Confidence 3456677777778888888888888876666666666665554444444433322 222211111 122211
Q ss_pred HHHHHHhhh-----hHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHH---HHhHHHHHH
Q 004160 177 EDLKLRLKE-----RDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVV---KKQETEIQS 248 (771)
Q Consensus 177 ~~lk~~~~~-----~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~---~~qe~~~~~ 248 (771)
+. -..+ -..++.+++.-...-..+++..|+++-+-..+.+....+ |..-+.+|=+++ .--...+.+
T Consensus 103 e~---~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~---k~~A~~~aeea~~~a~~~~~kve~ 176 (522)
T PF05701_consen 103 EQ---GIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDA---KNAALKQAEEAVSAAEENEEKVEE 176 (522)
T ss_pred hh---hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1100 223344444444444455555555554444444443332 444444444433 334455677
Q ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhhHHHHHH
Q 004160 249 LRKVIQEKEEELEASVAL-RKVEEEKLKVVEANLEKRTMEWLL 290 (771)
Q Consensus 249 l~~~~~~ke~~~~~~~~~-~k~~~ekl~~~e~~le~~~~~wl~ 290 (771)
|..+|..--+.|.-+... ..+++++..+. ...+.....|-.
T Consensus 177 L~~Ei~~lke~l~~~~~a~~eAeee~~~~~-~~~~~~~~~~~~ 218 (522)
T PF05701_consen 177 LSKEIIALKESLESAKLAHIEAEEERIEIA-AEREQDAEEWEK 218 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 888887777777766443 33444444433 444455556654
No 20
>PRK01156 chromosome segregation protein; Provisional
Probab=98.71 E-value=0.0025 Score=77.14 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160 347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE 378 (771)
Q Consensus 347 q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e 378 (771)
.-..|.+.+.+|......+.+.+..|+.|.-+
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~ 448 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALRENLDELSRNMEM 448 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666667776666677666667766443
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.59 E-value=0.0081 Score=76.95 Aligned_cols=454 Identities=22% Similarity=0.235 Sum_probs=221.8
Q ss_pred HHHhHhhHHHHHHHHH----hhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhH-------
Q 004160 99 LEILESDLQAVLAALK----KKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNL------- 167 (771)
Q Consensus 99 ~~~l~s~~~~~l~~l~----~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~------- 167 (771)
+..|+++|+.--.-+| ....+|.+|=+.|-.-...+..++.+|.--..+|...-++-..|++.|+...-
T Consensus 814 l~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~ 893 (1822)
T KOG4674|consen 814 LQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDS 893 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence 4444444444333332 34455666666777777777777777777777777777777777777654321
Q ss_pred -----HH---HHhh----hhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHH-------hhHHHHhHHHHHhhH
Q 004160 168 -----KL---VSQA----RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLK-------KSEEAAKIDSELKSK 228 (771)
Q Consensus 168 -----~l---~~q~----~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~-------k~~e~~~~~~e~~~k 228 (771)
+. +... -+|+.|+-.|...-.+|-..+...+.-+.=+..|+..+-. +-+......+.+..+
T Consensus 894 ~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ 973 (1822)
T KOG4674|consen 894 KSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEE 973 (1822)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 11 1111 2455666666666666666666655555555555544332 222222222222222
Q ss_pred HHHhHHHhHHHH--------H-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004160 229 AQMLNEANEVVK--------K-------QETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD 293 (771)
Q Consensus 229 ~~~l~~an~~~~--------~-------qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~ 293 (771)
-..|..=++... - .-.++.-|++..+... ....--..++.....+|.+++.-|=.||.
T Consensus 974 ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~-------~~~s~~~~~~~~~k~dl~~~~~~~~~a~~ 1046 (1822)
T KOG4674|consen 974 LSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLL-------KAASQANEQIEDLQNDLKTETEQLRKAQS 1046 (1822)
T ss_pred HHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111211111111 0 1112222222222211 11122223444555667777777777664
Q ss_pred HHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHH
Q 004160 294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVEL-------EEQKKSLT 366 (771)
Q Consensus 294 elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el-------~~q~~~~~ 366 (771)
.--.=--.-+......-.+-++|-.+..=+...++..-+-+..+..--+.+.++..-|..++.++ ..|=+++.
T Consensus 1047 ~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh 1126 (1822)
T KOG4674|consen 1047 KYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLH 1126 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221111122223334455666666666666666655555555544444444444444444433 33333333
Q ss_pred HHHhhhHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 367 SYMTSLKDA-----------------------QVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQ 423 (771)
Q Consensus 367 s~~~~l~~a-----------------------~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEe 423 (771)
+-...+-+. +-|-+.=.+++..++.++..|.++..-....|.+++..+...+...+.
T Consensus 1127 ~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~ 1206 (1822)
T KOG4674|consen 1127 DQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQK 1206 (1822)
T ss_pred HHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 332222222 011122235566667777777777777777777777777666655511
Q ss_pred ----------HH----------HHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 424 ----------AI----------DEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE 483 (771)
Q Consensus 424 ----------lq----------eEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE 483 (771)
+. +.=.-|+++.......+.++...++.++.++..++..+.+++.++......+..+...
T Consensus 1207 ~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e 1286 (1822)
T KOG4674|consen 1207 SAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEE 1286 (1822)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112233444444455555556666666666666666666666665555555555555
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhhhhHHHHHHHHHHHH
Q 004160 484 LSNARQMLEELNN--------EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ----NELDGTKLKVSEAETVVEQIV 551 (771)
Q Consensus 484 LeeiqrrLeeLr~--------ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q----~ELNe~nIe~sQqEtl~eRIe 551 (771)
-..=..+-.++.. .+..|++.+..+++.+......+.+....+..++ ..++..+..........+++.
T Consensus 1287 ~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~ 1366 (1822)
T KOG4674|consen 1287 NDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLE 1366 (1822)
T ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444432 2445555555555555555555555554444444 344444444444444555555
Q ss_pred HHHHHHhh
Q 004160 552 DLTHKLVI 559 (771)
Q Consensus 552 eLt~eLe~ 559 (771)
++..+|..
T Consensus 1367 ~~~~rL~~ 1374 (1822)
T KOG4674|consen 1367 DLKTRLAA 1374 (1822)
T ss_pred HHHHHHHH
Confidence 55555554
No 22
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.45 E-value=0.00019 Score=74.59 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 004160 544 ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~ 561 (771)
..+..+|..++.+|..+.
T Consensus 172 ~~~e~~i~~L~~~lkeaE 189 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAE 189 (237)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555433
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.39 E-value=0.021 Score=71.99 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=16.2
Q ss_pred ceeeccccccccccchhhhcCCC
Q 004160 29 RYVTSGKRRVRSLGLVRAVLPDG 51 (771)
Q Consensus 29 ~~~~~~~~~~~~~~~v~sv~~~~ 51 (771)
.++..+.+..|-|++|.+|+++.
T Consensus 172 SL~~s~~~~~hI~kli~~vln~~ 194 (1201)
T PF12128_consen 172 SLCESSHQYQHIEKLINAVLNKK 194 (1201)
T ss_pred CcCCCcccccChHHHHHHHHhcc
Confidence 33335567888889998887765
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.32 E-value=0.0013 Score=69.88 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHH
Q 004160 605 ARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL 644 (771)
Q Consensus 605 lReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el 644 (771)
+...|..++.+|..++..++..-.|....|.-.=+.+.|+
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EI 299 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEI 299 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444555555555555544444444444433333333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.31 E-value=0.025 Score=69.50 Aligned_cols=203 Identities=21% Similarity=0.348 Sum_probs=134.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEE 271 (771)
Q Consensus 192 ~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ 271 (771)
++++-|+-.. .+++=.+|=|.-.+..|+.=+-+=...+.+|++.|..-+.+|..+...|.+.++-+..++.+-...+
T Consensus 186 ~aR~FL~~~~---p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~ 262 (1074)
T KOG0250|consen 186 AARSFLANSN---PKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKE 262 (1074)
T ss_pred HHHHHHhcCC---hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555443 3567788999999999999999999999999999999999999999999999999998877766554
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q 004160 272 EKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLL 351 (771)
Q Consensus 272 ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l 351 (771)
.... =+--|.|..+=. +.. +.++..+.|+....=.+.+...+-.-+......|..+-+-+.++
T Consensus 263 ~l~~------Lk~k~~W~~V~~----------~~~-ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i 325 (1074)
T KOG0250|consen 263 NLEQ------LKAKMAWAWVNE----------VER-QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKI 325 (1074)
T ss_pred HHHH------HHHHHHHHHHHH----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3321 133477765421 111 12233344444444455555666666777888898888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 352 GKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL 414 (771)
Q Consensus 352 ~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qL 414 (771)
..-..|-..|..-++..-.++.++.-++.--..+.+.+...+..+...+-.+++.|+.++.+.
T Consensus 326 ~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 326 GELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887788777877777776666666665544444444444444444444444444444443333
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.30 E-value=0.003 Score=65.81 Aligned_cols=218 Identities=17% Similarity=0.217 Sum_probs=104.1
Q ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 324 SDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSME 403 (771)
Q Consensus 324 ~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlql 403 (771)
..++.++--....+.....++.+....+..--+++..-..-+......|..+...+..-..+|..+.....+.++.+-.+
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l 83 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666555555555555555555555556666666666655555556665555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE 483 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE 483 (771)
++........+..++..+.............+......+..++..+...+.....+..++..+..++..+.+.+..+...
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 44444444444444444444433333333333333333333333333333333444444444444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160 484 LSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS 541 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s 541 (771)
-.....+.+.....+..|...+...+.....+...+..++..+..+.+.|...+-.+.
T Consensus 164 ~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 164 EEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444433
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.26 E-value=0.011 Score=68.66 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH
Q 004160 601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL 647 (771)
Q Consensus 601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~ 647 (771)
.+-+.+..|.++...++-+++++.-.-+|=..++.-.-..+..|+++
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555444333333333333334455555
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.25 E-value=0.022 Score=66.21 Aligned_cols=164 Identities=20% Similarity=0.332 Sum_probs=92.0
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 004160 179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE 258 (771)
Q Consensus 179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~ 258 (771)
|+..+..-..++..++..|+....++++++...-........+..|...-..-+.++..-|.+.+.++..|.....+.+.
T Consensus 162 Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 162 LEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566777788888888888888765443333333333333332222344555555555556555555544443
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHH
Q 004160 259 ELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLA 338 (771)
Q Consensus 259 ~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~ 338 (771)
.+..... ..+++|... .+|| +....-+...+.....+.+...=++..+.+|...+..+.
T Consensus 242 ~~~~lk~-----------~~~elEq~~-------~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lq 300 (546)
T PF07888_consen 242 ELDKLKE-----------LKAELEQLE-------AELK---QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQ 300 (546)
T ss_pred HHHHHHH-----------HHHHHHHHH-------HHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 222222211 1111 111122334444444555666667889999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 339 SSRKQMEEQEHLLGKQLVELEEQKKSLTS 367 (771)
Q Consensus 339 ~sr~~~e~q~~~l~~q~~el~~q~~~~~s 367 (771)
.|+. +...|.+.+..+...|.--|+
T Consensus 301 aSqq----~~~~L~~EL~~~~~~RDrt~a 325 (546)
T PF07888_consen 301 ASQQ----EAELLRKELSDAVNVRDRTMA 325 (546)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 9974 566888888999888865554
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.23 E-value=0.052 Score=69.75 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHH
Q 004160 285 TMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSEL 330 (771)
Q Consensus 285 ~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el 330 (771)
+-+|+....|.-.+-++|++......++...+..+..-|..|..++
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL 316 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMAREL 316 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999998877777777777666666666665555
No 30
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.22 E-value=0.031 Score=66.76 Aligned_cols=268 Identities=21% Similarity=0.198 Sum_probs=150.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHH
Q 004160 238 VVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR 317 (771)
Q Consensus 238 ~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~ 317 (771)
..+.-+..|..||....+.|-++-..-+.+-.-+..+|.++-+||--|. +|-+|.+..|-+.++|--..+|++
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHHHHHh
Confidence 4455667788999999999999999999999999999999999987654 577888888888888888888887
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH-------------HHHHHHHHH-------HHHHHHHHHHhhhHHHhH
Q 004160 318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHL-------------LGKQLVELE-------EQKKSLTSYMTSLKDAQV 377 (771)
Q Consensus 318 rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~-------------l~~q~~el~-------~q~~~~~s~~~~l~~a~~ 377 (771)
-----|++.++++.---.--+.-.++.++...+ +-.+.+++. -|=.+-.-||+-|+-.=.
T Consensus 173 nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s 252 (1265)
T KOG0976|consen 173 DKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCS 252 (1265)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhH
Confidence 777778888888765444444444444433332 222333321 111222234444432222
Q ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 004160 378 EVES-----------ERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE 446 (771)
Q Consensus 378 e~~~-----------~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqEle 446 (771)
-|+. =..+.|+.+.-+..|...+++.+..+-.++..++.+++.......++..-.+ -+..+..+..
T Consensus 253 ~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatk---ylh~enmklt 329 (1265)
T KOG0976|consen 253 MIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATK---YLHLENMKLT 329 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHH
Confidence 2211 1234566666677777788888888888888888887776554443322111 1122233333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 447 NLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQA 515 (771)
Q Consensus 447 keIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEl 515 (771)
..+..++..+-+.+.+.+-+-..++.+++...........++..+.....++..|..+...++.++.++
T Consensus 330 rqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidel 398 (1265)
T KOG0976|consen 330 RQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDEL 398 (1265)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333433333333333333333333333333333333333333333333333333333333333
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.13 E-value=0.0076 Score=73.77 Aligned_cols=171 Identities=19% Similarity=0.322 Sum_probs=91.7
Q ss_pred HHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Q 004160 362 KKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYS-----LQQAIDEVSSLQEELG 436 (771)
Q Consensus 362 ~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqe-----LEelqeEIesLQeELq 436 (771)
+.+..++|.++..|+..|.-....+-....++.+.+..+-.++. ++.+..++..++.. +.....+...+..++.
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~-~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~ 291 (1074)
T KOG0250|consen 213 TESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQ-LEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIK 291 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888887777777776666666666665554432 22333333333322 1233333333334444
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 437 RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM 516 (771)
Q Consensus 437 elekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEle 516 (771)
.++..+..++..+........++..++...+..+..+..+...-+.++..+...++.++-++..++..+...+..+.+..
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444455555555555555555556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004160 517 DTLQEKDEHVLILQNEL 533 (771)
Q Consensus 517 eeLkEkEE~L~~~q~EL 533 (771)
..+..++.+|..+..++
T Consensus 372 ~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555555555
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.11 E-value=0.022 Score=60.70 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=35.7
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 004160 583 GLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTV 633 (771)
Q Consensus 583 eLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~ 633 (771)
.+......+...+..++.++..++..+...-.+...+..-+-..|-|+.+-
T Consensus 252 ~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY 302 (312)
T PF00038_consen 252 RLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444666677777777777777777777777777777777777777653
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.11 E-value=0.069 Score=68.68 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=82.5
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 004160 370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449 (771)
Q Consensus 370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeI 449 (771)
...+.|.-.++....++..+.....++..++..+++++..+...+.-... ......++..+...+..+...+.+....+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee-~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT-ALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666666666666666666666666666655554443332 12223334444444444444444444444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HhHHHHHHHHHHHH
Q 004160 450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL---KMIM-------SSREEQLVQAMDTL 519 (771)
Q Consensus 450 eelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL---KslI-------esLEgqLeEleeeL 519 (771)
......+..+..++..++.++..++..+.++...+...+.++......+..+ +... +++++.+..+...+
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~akl 451 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKE 451 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443333322222 2221 33555555555555
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 520 QEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 520 kEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
.++...+..++.+++..+....+.
T Consensus 452 ee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.08 E-value=0.0054 Score=69.89 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=5.9
Q ss_pred CCCCCCchH
Q 004160 57 NGYGLGEPA 65 (771)
Q Consensus 57 ~~~g~~e~a 65 (771)
|+||++=+.
T Consensus 34 G~NG~GKSt 42 (562)
T PHA02562 34 GKNGAGKST 42 (562)
T ss_pred CCCCCCHHH
Confidence 667777654
No 35
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.02 E-value=0.012 Score=67.19 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=7.0
Q ss_pred CcccCCCCc-ccccccc
Q 004160 10 NHLHLNPNP-KVHWKHK 25 (771)
Q Consensus 10 ~~~~~~~~~-~~~~~~~ 25 (771)
|+..|...| .++|...
T Consensus 11 nf~s~~~~~~~i~f~~~ 27 (562)
T PHA02562 11 NILSVGNQPIEIQLDKV 27 (562)
T ss_pred cccccCCCceEEEEcCC
Confidence 333444333 3456543
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.04 Score=68.09 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=190.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHH
Q 004160 311 DTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTE 390 (771)
Q Consensus 311 ~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aq 390 (771)
.-|+.|.+==..|+++|++-..+-+-- .+-...|+.-+...+.|+.- +.....
T Consensus 267 ~~I~~~~~rv~~L~e~~sek~~~~k~~--------------e~ek~~lE~~k~~al~fL~k-------------enel~~ 319 (1293)
T KOG0996|consen 267 EPIEELMRRVERLNEDRSEKENRVKLV--------------EKEKKALEGPKNEALEFLKK-------------ENELFR 319 (1293)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHhhhHHHHHHHHHH-------------HHHHHH
Confidence 447778887888999999876543322 23334556666777777642 122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE-TENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE-lekeIeelEnELeeLq~eiEqLKsE 469 (771)
-..+-++..++....+|...+..+.+.+..+......+.....+..++...+.. +........+...+++.+...+..+
T Consensus 320 ~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~ 399 (1293)
T KOG0996|consen 320 KKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLERE 399 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777777777777666666444444443333333 5555556666666777777777666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHH
Q 004160 470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVE 548 (771)
Q Consensus 470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~e 548 (771)
-...+..+.....++..+...++....+...+....+.....+.+.++.+..+.+.+...+..|.+....+.+- +-...
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 66666666666666666666666666666666666667777777777777777777777777777776666665 56666
Q ss_pred HHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004160 549 QIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTV 625 (771)
Q Consensus 549 RIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~ 625 (771)
.|.++..+|.... .+++....++ +.+| .-|..........+..+.+.+..+...+.+.-..|..+...+..
T Consensus 480 e~~~~ekel~~~~----~~~n~~~~e~~vaesel--~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 480 EIEKLEKELMPLL----KQVNEARSELDVAESEL--DILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6777777776655 4455555444 5666 55555555555666666666666666666666666666666666
Q ss_pred chHHHHHHHhhhhhhHHHHH
Q 004160 626 KDEELKTVLGRLDAKEKELK 645 (771)
Q Consensus 626 kd~elk~~~~~~~~~~~el~ 645 (771)
.-.|++.+-.-++..-++.+
T Consensus 554 ~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 554 LKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 66666655555544444443
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.91 E-value=0.092 Score=60.91 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
..++.+....+-....++..++.....++.+|+....++..+++........+..+...+.....++..+.......+..
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 33333333333334444444444444444444444444444444433333334444444444444444443333333333
Q ss_pred HHHHHHHHHh
Q 004160 470 QASLQLILEE 479 (771)
Q Consensus 470 IesLq~ELEE 479 (771)
...+...++.
T Consensus 367 ~~~l~~~Lqq 376 (522)
T PF05701_consen 367 MSELPKALQQ 376 (522)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.03 Score=66.68 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
+-.-+.+..+--+-++++--...++.++.++..+.+...-.+......|+.++..++..+.++..++...+-.+...+..
T Consensus 394 eie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 394 EIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 33334444555566677777788888888888888888887777888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREE-------QLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEg-------qLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
++.+..+++....++..+..+|.+.+.++..+-+|...|..++...+. ...++...+..++...+.+.+++.+
T Consensus 474 ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde 553 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE 553 (1118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777777777777777777777777777776766666666555432 2444444444444444333333322
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 536 TKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEME 615 (771)
Q Consensus 536 ~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~e 615 (771)
+...++.-.+++.++. .++ .+-+..+..++-..+..|..-+..+.+.+..
T Consensus 554 ----------lskE~esk~~eidi~n---------------~ql-----kelk~~~~~q~lake~~yk~e~d~~ke~et~ 603 (1118)
T KOG1029|consen 554 ----------LSKETESKLNEIDIFN---------------NQL-----KELKEDVNSQQLAKEELYKNERDKLKEAETK 603 (1118)
T ss_pred ----------HHHHHHHHHHhhhhHH---------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222211 222 2223555566666777777788888888888
Q ss_pred HHHHHHhcccchH
Q 004160 616 VLAAKRALTVKDE 628 (771)
Q Consensus 616 LrelrRaL~~kd~ 628 (771)
..++...+..++.
T Consensus 604 ~lel~~~ke~e~~ 616 (1118)
T KOG1029|consen 604 ALELIGEKEAESA 616 (1118)
T ss_pred HHHHHhhhhhccc
Confidence 8888777766553
No 39
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.15 Score=62.61 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=23.5
Q ss_pred HHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160 218 AAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEAS 263 (771)
Q Consensus 218 ~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~ 263 (771)
.....+++......+..+++-+......+..+...+.+....+...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 391 IQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555544444433
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.15 Score=62.57 Aligned_cols=420 Identities=19% Similarity=0.207 Sum_probs=210.2
Q ss_pred hHHHHhHHHhHHHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004160 227 SKAQMLNEANEVVKKQETEIQSLRKVIQE---------------KEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLS 291 (771)
Q Consensus 227 ~k~~~l~~an~~~~~qe~~~~~l~~~~~~---------------ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~ 291 (771)
++--.+.+||+-+.-+.-+.-.|-....+ -......++++..+ +.|++.-++.||-.+--.+--
T Consensus 125 ~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdl-e~kir~LrqElEEK~enll~l 203 (1195)
T KOG4643|consen 125 SVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADL-EKKIRTLRQELEEKFENLLRL 203 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666665555554444322211 12223333333333 457777777777777666777
Q ss_pred HHHHHHHHHHHHHhhHHhhhHHHhHHHH---HHHHHHHHHHHhh--h-----hhHHHHHHHhHHHHH----------HHH
Q 004160 292 QDALKKLAEEASRRMEETNDTLEDFRRV---KKLLSDVRSELVS--S-----QKSLASSRKQMEEQE----------HLL 351 (771)
Q Consensus 292 q~elk~l~~~a~k~~~~~~~~~~df~rv---~~ll~~vr~el~~--s-----~~~~~~sr~~~e~q~----------~~l 351 (771)
..||.-|..+.+|--.++-+-+.+-+|. ++=|++.|.--.. + =+-.-|++-++|+-. ..|
T Consensus 204 r~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeML 283 (1195)
T KOG4643|consen 204 RNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEML 283 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7777777777777777776666654443 3334443322111 0 012334455554432 235
Q ss_pred HHHHHHHHHHH------HHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 004160 352 GKQLVELEEQK------KSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN-------ELNKEK 418 (771)
Q Consensus 352 ~~q~~el~~q~------~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~-------qLqkek 418 (771)
+.|++.+.-|= +-++-|-+.|.+-+.+---.+.|+-.+..++..|+.+--++.-..+-+++ .-....
T Consensus 284 eeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~ 363 (1195)
T KOG4643|consen 284 EEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQ 363 (1195)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHH
Confidence 55666665554 44667777777777777777778878888887777776666666666555 333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 419 YSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEV 498 (771)
Q Consensus 419 qeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~EL 498 (771)
.+.++++.+ ..++..+.. ..+.. ..-+.....+.++..++-.++..-.++...++.+.++|...-..+..++..-
T Consensus 364 ~e~eqLts~-ralkllLEn--rrlt~--tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~ 438 (1195)
T KOG4643|consen 364 VENEQLTSD-RALKLLLEN--RRLTG--TLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLE 438 (1195)
T ss_pred HHHHHhhhH-HHHHHHHHh--HHHHH--HHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444331 112222211 00000 0001111133333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhhhhhHHHH-----------HHHHHHHHHHHHHH
Q 004160 499 RELKMIMSSREEQLVQAMDTLQE----------KDEHVLILQNELDGTKLKVSEA-----------ETVVEQIVDLTHKL 557 (771)
Q Consensus 499 kELKslIesLEgqLeEleeeLkE----------kEE~L~~~q~ELNe~nIe~sQq-----------Etl~eRIeeLt~eL 557 (771)
+.|....+.++......+..+.. .-.-+.+....++....+.... ..+...+..+++++
T Consensus 439 K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~ 518 (1195)
T KOG4643|consen 439 KKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQY 518 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333322222222 1111222222222222221111 22222333333333
Q ss_pred hhhccCcccCcCCcchHH-hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhh
Q 004160 558 VISNKNDESSTSMPTDDM-GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGR 636 (771)
Q Consensus 558 e~s~~~~~~dI~qlkdEI-eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~ 636 (771)
..+. ...+. ...+ ..|......++.+-..|-.++..+... -+.-+-|..-+..++.-+.|++..+..
T Consensus 519 kt~~---------~qye~~~~k~--eeLe~~l~~lE~ENa~LlkqI~~Lk~t-~qn~~~LEq~~n~lE~~~~elkk~ida 586 (1195)
T KOG4643|consen 519 KTCD---------IQYELLSNKL--EELEELLGNLEEENAHLLKQIQSLKTT-SQNGALLEQNNNDLELIHNELKKYIDA 586 (1195)
T ss_pred HHHH---------HHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHH-hHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 2211 00011 4445 555555566666666666666666665 566667777788888899999999999
Q ss_pred hhhhHHHHHhHHhh------hhChhhHHHHHHHH
Q 004160 637 LDAKEKELKKLEET------VEDANDLRKLYALA 664 (771)
Q Consensus 637 ~~~~~~el~~~~~~------~~d~~d~~~~~~~~ 664 (771)
|.+.....++||+- .+||.++++-+.|-
T Consensus 587 L~alrrhke~LE~e~mnQql~~d~~~~kr~ie~L 620 (1195)
T KOG4643|consen 587 LNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWL 620 (1195)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHH
Confidence 99988888888433 47887777766654
No 41
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.15 Score=62.51 Aligned_cols=59 Identities=34% Similarity=0.331 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhH
Q 004160 595 TKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL 657 (771)
Q Consensus 595 l~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~ 657 (771)
+..++.+|...+..+..+...+.... .--+.++.....+...-++++++.....++..+
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 748 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIE----QLIEELESRKAELEELKKELEKLEKALELLEEL 748 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666555555555421 123344444555555555555554333333333
No 42
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=0.17 Score=61.99 Aligned_cols=164 Identities=18% Similarity=0.255 Sum_probs=89.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELN 415 (771)
Q Consensus 336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLq 415 (771)
---..|++|.+--.-+...|.+|++-|.-+--|.. ++-+....+.-.-..++. .+..++..+.....
T Consensus 181 ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqk------ldk~rr~lEYtiYdrEl~-------E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 181 ETKQKREKINELLKYIEERLRELEEEKEELEKYQK------LDKERRSLEYTIYDRELN-------EINGELERLEEDRS 247 (1200)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHhHhhhhhhhhhhHHH-------HHHHHHHHHHHHHh
Confidence 34467788888888888888888888887777753 111222211111122222 22223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 416 KEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN 495 (771)
Q Consensus 416 kekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr 495 (771)
..-.+.++....+..-..+...+..++.++...+..+..++..+..+...+-.+...++..+..++.+++..........
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l 327 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLAL 327 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHH
Confidence 33333333444444445555555556666666666666666666666666666666666677777766666666555554
Q ss_pred HHHHHHHHHHHhHHHHH
Q 004160 496 NEVRELKMIMSSREEQL 512 (771)
Q Consensus 496 ~ELkELKslIesLEgqL 512 (771)
..+..+++.+...+..+
T Consensus 328 ~~l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 54444444444444333
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.77 E-value=0.16 Score=59.45 Aligned_cols=103 Identities=24% Similarity=0.206 Sum_probs=76.1
Q ss_pred hHhhHHH-HHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHHHH
Q 004160 102 LESDLQA-VLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLK 180 (771)
Q Consensus 102 l~s~~~~-~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~lk 180 (771)
+..++.- .-..|-.=|+.|-+||.- .|..++-.|+..+..-+..|..+-.....+.++|......=..+-.+|..|+
T Consensus 69 w~~~~~~i~~~~~~~ie~~l~~ae~~--~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~ 146 (569)
T PRK04778 69 WRQKWDEIVTNSLPDIEEQLFEAEEL--NDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLK 146 (569)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 444566668888888875 5788999999999999999999999999999888877666666667777777
Q ss_pred HHhhhhHHHHHHHHHhhhhhHHHHHH
Q 004160 181 LRLKERDQEIAAMQSALSLKELELEK 206 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~ls~k~~e~~~ 206 (771)
...++--+.+.+-...++.-...+++
T Consensus 147 ~~y~~~rk~ll~~~~~~G~a~~~le~ 172 (569)
T PRK04778 147 DLYRELRKSLLANRFSFGPALDELEK 172 (569)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHH
Confidence 77777666666666666655555544
No 44
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.76 E-value=5.9e-06 Score=99.70 Aligned_cols=163 Identities=28% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHh-------hhhHHHHHhhhhhHHHHHHhh
Q 004160 112 ALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELG-------QSNLKLVSQARHIEDLKLRLK 184 (771)
Q Consensus 112 ~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~-------~~~~~l~~q~~~i~~lk~~~~ 184 (771)
.|+|||.+|..+-.++-.+.+.....-. .|....++.+.|+++|- +|.+.-..-.++++.|+-.|+
T Consensus 12 ~l~kke~El~~~~~~~e~e~~~~~~l~k-------~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Le 84 (859)
T PF01576_consen 12 QLKKKEEELSQLNSKLEDEQALRAQLQK-------KIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLE 84 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999888888777665544432 23333444445554442 233333333568889999999
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHH--------HhHHHhHHHHHhHHHHHHHHHHHHHH
Q 004160 185 ERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQ--------MLNEANEVVKKQETEIQSLRKVIQEK 256 (771)
Q Consensus 185 ~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~--------~l~~an~~~~~qe~~~~~l~~~~~~k 256 (771)
+.-....+-...-...+.|+.+||.+|-.-.-.-...-++++.|-+ -+..+.-+-.+-|.+-..|...+..-
T Consensus 85 e~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL 164 (859)
T PF01576_consen 85 EAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDL 164 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999888899999999999999994322222223344444431 12223333333344444555555555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 257 EEELEASVALRKVEEEKLKVVEANL 281 (771)
Q Consensus 257 e~~~~~~~~~~k~~~ekl~~~e~~l 281 (771)
...+......+---+.+.|..|+.|
T Consensus 165 ~~~l~~~~k~k~~~Ek~~K~lE~qL 189 (859)
T PF01576_consen 165 QAQLDSLQKAKQEAEKKRKQLEAQL 189 (859)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 5555544443333344455555444
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.75 E-value=0.17 Score=59.18 Aligned_cols=92 Identities=18% Similarity=0.382 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Q 004160 271 EEKLKVVEANLEK-----RTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQME 345 (771)
Q Consensus 271 ~ekl~~~e~~le~-----~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e 345 (771)
+.+|...|.+..+ .+-+++.|.+-|.++.. +++.....|+ +|-+|+..+..++-.-=.-|..-=++|.
T Consensus 171 e~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~----~~~~l~~~~~---~iP~l~~~~~~~~P~ql~el~~gy~~m~ 243 (569)
T PRK04778 171 EKQLENLEEEFSQFVELTESGDYVEAREILDQLEE----ELAALEQIME---EIPELLKELQTELPDQLQELKAGYRELV 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566666666653 33457777777776654 3444444443 3455666666555433334444444454
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHH
Q 004160 346 EQE-----HLLGKQLVELEEQKKSLTSYM 369 (771)
Q Consensus 346 ~q~-----~~l~~q~~el~~q~~~~~s~~ 369 (771)
++- ..+.++++.|.++....+.-.
T Consensus 244 ~~gy~~~~~~i~~~i~~l~~~i~~~~~~l 272 (569)
T PRK04778 244 EEGYHLDHLDIEKEIQDLKEQIDENLALL 272 (569)
T ss_pred HcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 431 245666666666655544433
No 46
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.74 E-value=5.3e-05 Score=89.75 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160 323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL 372 (771)
Q Consensus 323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l 372 (771)
..-|..|..+-+..+... ..++.+-.-++-|...|++.+.+..+|.++.
T Consensus 283 ~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 283 VELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666555554433 3445666677778999999999999998874
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.72 E-value=7.1e-06 Score=99.02 Aligned_cols=402 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHh
Q 004160 230 QMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEET 309 (771)
Q Consensus 230 ~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~ 309 (771)
..+...+....+-..++.+|...+...+..+..+.-.+.-=+..|.-+...|+--+-.-...+..|+.+..+ .+..
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e----~~~L 276 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHE----LEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH----HHHH
Confidence 344455555556666666666666666665555544333333444444444444444444444444444332 2233
Q ss_pred hhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160 310 NDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE-----------QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE 378 (771)
Q Consensus 310 ~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~-----------q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e 378 (771)
.+.+++.-.-+.- +...|..++.-+++.|++++. --..|..++.++.++-....++..+|+-++..
T Consensus 277 ~eqleeE~e~k~~---l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r 353 (859)
T PF01576_consen 277 REQLEEEEEAKSE---LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR 353 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHH---HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222211 112222333334444444333 33344555555555555555555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE 458 (771)
Q Consensus 379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee 458 (771)
+.++...+. .++.........++++.-.++..+...+..+.. +..++.....+...+...+-.+.+.+..
T Consensus 354 L~~EleDl~---~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~-------~~~e~d~~q~e~r~~~te~~~Lk~~lee 423 (859)
T PF01576_consen 354 LQGELEDLT---SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEE-------LQAERDAAQREARELETELFKLKNELEE 423 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence 444433222 222222222223333333333333333333333 3333333334444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKL 538 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nI 538 (771)
+...++.+......++.+|.++...+......+.++......|...+..+...+.+++..+...+..+.-++..|+.++.
T Consensus 424 ~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 424 LQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777777777777777777777777777778888888888888888888888888888888887
Q ss_pred hHHHH------------HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHH
Q 004160 539 KVSEA------------ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFAR 606 (771)
Q Consensus 539 e~sQq------------Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelR 606 (771)
.+-+- .+....|..+...|+.=. -.-..+...+..+..+| ..|....+........+...+..+.
T Consensus 504 e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~-k~r~~~~r~kkKLE~~l--~eLe~~ld~~n~~~~e~~k~~kk~q 580 (859)
T PF01576_consen 504 EIERELQEKEEEFEETRRNHQRQLESLEAELEEER-KERAEALREKKKLESDL--NELEIQLDHANRANEEAQKQLKKLQ 580 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77554 356777778887776411 11223334444445555 5555444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhh
Q 004160 607 ENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETV 651 (771)
Q Consensus 607 eeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~ 651 (771)
..+.++-..+.+.++..+.--..+...-.++....-||..+....
T Consensus 581 ~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~ 625 (859)
T PF01576_consen 581 AQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREAL 625 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444444444445555555555554333
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.71 E-value=0.33 Score=61.48 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhcc-------chhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKG-------NDNFRLQTKQLEIELKFARENLRMKE 613 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLeke-------reeLeeel~eLEqEleelReeLrEkE 613 (771)
..+.++|..+..+|.... .....+ ...+ ...... +..+..++..+++.+..++..+..+.
T Consensus 774 ~~l~~~i~~L~~~l~~ie--------~~r~~V~eY~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 843 (1201)
T PF12128_consen 774 QQLKQEIEQLEKELKRIE--------ERRAEVIEYEDWL--QEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ 843 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHH--HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777544 222222 3333 333333 44444444444444444444444444
Q ss_pred HHHHHHHHhc
Q 004160 614 MEVLAAKRAL 623 (771)
Q Consensus 614 ~eLrelrRaL 623 (771)
.++...+..+
T Consensus 844 ~~~~~~~~~l 853 (1201)
T PF12128_consen 844 KEVKQRRKEL 853 (1201)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.70 E-value=0.029 Score=65.26 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhH
Q 004160 600 IELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDL 657 (771)
Q Consensus 600 qEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~ 657 (771)
.+...+...|..++.+|..++.+++..--||-+.|.-.-....|+..--.+++-.++.
T Consensus 335 e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 335 EDQRSFEQALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccccCC
Confidence 3444555667777777777777777777777777776666666666555555444433
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.67 E-value=0.34 Score=60.59 Aligned_cols=248 Identities=18% Similarity=0.173 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 354 QLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE 433 (771)
Q Consensus 354 q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQe 433 (771)
...++++-...+..|+..|-.....+.++..+.+..+.+..+ .+..++++|..+++.+.....++...+.......+
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e---~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e 658 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISE---IIAELKEEISSLEETLKAGKKELLKVEELKRENQE 658 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333666666677777777766666666666555544443332 23334444444444444444444444332212222
Q ss_pred HHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160 434 ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV 513 (771)
Q Consensus 434 ELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe 513 (771)
.+...+++ ..-...+.++..++.+.++...+...+ +|........++...+..=+.-...+++-..
T Consensus 659 ~~~~~ek~-----~~e~~~e~~lk~~q~~~eq~~~E~~~~---------~L~~~e~~~~e~~~~lseek~ar~k~e~~~~ 724 (1317)
T KOG0612|consen 659 RISDSEKE-----ALEIKLERKLKMLQNELEQENAEHHRL---------RLQDKEAQMKEIESKLSEEKSAREKAENLLL 724 (1317)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 22221111 111122223333333333333332222 2222233344444444444444455566666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchh
Q 004160 514 QAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDN 590 (771)
Q Consensus 514 EleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekeree 590 (771)
+++..+..+..-+...+..++..+-...+. ......++..|+... ..-..+.+++ +..+ .. ..
T Consensus 725 ~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~---~~~vl~Lq~~LEqe~----~~r~~~~~eLssq~~~~-----~t--~~ 790 (1317)
T KOG0612|consen 725 EIEAELEYLSNDYKQSQEKLNELRRSKDQL---ITEVLKLQSMLEQEI----SKRLSLQRELKSQEQEV-----NT--KM 790 (1317)
T ss_pred HHHHHHHHHhhhhhhhccchhhhhhhHHHH---HHHHHHHHHHHHHHH----HHhhhhHHHhhhHHHhh-----cc--HH
Confidence 666666666666666555555544433333 333344455555433 2222233344 2222 11 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q 004160 591 FRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKT 632 (771)
Q Consensus 591 Leeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~ 632 (771)
++.+...+...+..++..+..-.++++..++....-+-+|..
T Consensus 791 ~Ekq~~~~~~~l~~~K~~~e~~~~q~~~~~~~~~~~~k~lq~ 832 (1317)
T KOG0612|consen 791 LEKQLKKLLDELAELKKQLEEENAQLRGLNRSAWGQMKELQD 832 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 556666666666666666666666666655544444444433
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.67 E-value=0.13 Score=60.13 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhHHhhhHHH-hHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 292 QDALKKLAEEASRRMEETNDTLE-DFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMT 370 (771)
Q Consensus 292 q~elk~l~~~a~k~~~~~~~~~~-df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~ 370 (771)
+-++.-|-.-..++++.++...+ ....++++|++.-.+...-+.-+.-.+-++.+-...+.+...+...-|.-+-.|+.
T Consensus 69 ~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~ 148 (546)
T KOG0977|consen 69 EHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLS 148 (546)
T ss_pred HHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 34677777778888888877665 46678888888766666555555555555555555555555555555555555555
Q ss_pred hhHHHhHH
Q 004160 371 SLKDAQVE 378 (771)
Q Consensus 371 ~l~~a~~e 378 (771)
-|-..+.+
T Consensus 149 ~l~~leAe 156 (546)
T KOG0977|consen 149 RLSELEAE 156 (546)
T ss_pred hhhhhhhH
Confidence 55444443
No 52
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.63 E-value=0.15 Score=55.40 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160 544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL 623 (771)
++++++|+.+.++...+- ..+ ..++..++.+++....+-.++......+.++-..+..++..+
T Consensus 175 ~e~~eki~~la~eaqe~h---------------e~m--~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~el 237 (294)
T COG1340 175 REIHEKIQELANEAQEYH---------------EEM--IKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNEL 237 (294)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566677777777666544 344 555566666666666666666666666666666666666655
Q ss_pred ccchHHHHH
Q 004160 624 TVKDEELKT 632 (771)
Q Consensus 624 ~~kd~elk~ 632 (771)
.--+..|++
T Consensus 238 re~~k~ik~ 246 (294)
T COG1340 238 RELEKKIKA 246 (294)
T ss_pred HHHHHHHHH
Confidence 555555543
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.51 Score=58.97 Aligned_cols=183 Identities=22% Similarity=0.239 Sum_probs=124.9
Q ss_pred HHhHHHhHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 004160 230 QMLNEANEVVKKQETEIQSLRKVI--------------QEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDAL 295 (771)
Q Consensus 230 ~~l~~an~~~~~qe~~~~~l~~~~--------------~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~el 295 (771)
+-|...+.-+++-+.++.+.++.+ ..-..++.-+..+-..++.+|..--..|.+.|.+.=. |.
T Consensus 405 E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~---e~ 481 (1293)
T KOG0996|consen 405 EKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE---EI 481 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH---HH
Confidence 334555555566555555544433 3334444555555555555565555566665555432 22
Q ss_pred HHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160 296 KKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA 375 (771)
Q Consensus 296 k~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a 375 (771)
.++.. +......+|.++++=++.-+|||---...-..--+++++-...|..--..+.+-+..|.+....|.+-
T Consensus 482 ~~~ek-------el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~ 554 (1293)
T KOG0996|consen 482 EKLEK-------ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL 554 (1293)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 22222 22334566777888888888887655555556666777777777777777888888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 376 QVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQ 422 (771)
Q Consensus 376 ~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLE 422 (771)
+.|+....+.|-.++.+..++..++..+..++..+...+....++-+
T Consensus 555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~k 601 (1293)
T KOG0996|consen 555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNK 601 (1293)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999999999988877766544
No 54
>PRK11637 AmiB activator; Provisional
Probab=97.50 E-value=0.19 Score=56.51 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELN 415 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLq 415 (771)
.++..++.+|..++.++.
T Consensus 96 ~~i~~~~~ei~~l~~eI~ 113 (428)
T PRK11637 96 NTLNQLNKQIDELNASIA 113 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 55
>PRK11637 AmiB activator; Provisional
Probab=97.44 E-value=0.16 Score=57.06 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
++.+...+..+..++...+.+|..++.++...+..+..++.++..++..
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444443333
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.37 E-value=0.052 Score=65.09 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=64.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH-hhH
Q 004160 500 ELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM-GLE 578 (771)
Q Consensus 500 ELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI-eee 578 (771)
.++.....+|..+..+..+++.+++.+..+..++.+++.-. .+....++.|-..|..+. ..-..+.+.+ .+.
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~---~e~~~~~e~L~~aL~amq----dk~~~LE~sLsaEt 614 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYE---KESEKDTEVLMSALSAMQ----DKNQHLENSLSAET 614 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHH----HHHHHHHHhhhHHH
Confidence 47778888888888888889988888888888886555431 111222233333333222 1111111222 111
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160 579 LMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623 (771)
Q Consensus 579 L~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL 623 (771)
- =+.+|+..+-.+..+++-....++.+|.+|.+++..+
T Consensus 615 r-------iKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 615 R-------IKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1245566777777777777777777777777665443
No 57
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.2 Score=60.12 Aligned_cols=189 Identities=21% Similarity=0.225 Sum_probs=116.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTS-YMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL 414 (771)
Q Consensus 336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s-~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qL 414 (771)
..-.-||+-.|-+.+|++|- ||+-||.-=-- -..--++|+.|.+..| +|.==+.+..++..+-....+.|-.+...+
T Consensus 362 rqEqErk~qlElekqLerQR-eiE~qrEEerkkeie~rEaar~ElEkqR-qlewErar~qem~~Qk~reqe~iv~~nak~ 439 (1118)
T KOG1029|consen 362 RQEQERKAQLELEKQLERQR-EIERQREEERKKEIERREAAREELEKQR-QLEWERARRQEMLNQKNREQEWIVYLNAKK 439 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34456777777777777764 55555432111 1223456666666544 233446778888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-------HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 415 NKEKYSLQQAIDEVSSLQEELG-------RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNA 487 (771)
Q Consensus 415 qkekqeLEelqeEIesLQeELq-------elekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeei 487 (771)
..+..+|+.+...+..|...+. ....++..+.+..+.-..+...++.++.+++..+..+-.+.+.+..+|...
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 8888887777777776666643 334566666666666667777777777777777777777777777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 488 RQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 488 qrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
+.....-......|+......+.....+...+.+++...
T Consensus 520 q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 520 QSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444444445555544444444444444444444444
No 58
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.35 E-value=0.049 Score=53.35 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE 458 (771)
Q Consensus 379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee 458 (771)
...-..+...++..++.++....+.+.+|..|+..+..++..++. +...+......+.+........+ .
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~-------~~~~l~~~k~~lee~~~~~~~~E----~ 77 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK-------LEEQLKEAKEKLEESEKRKSNAE----Q 77 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHHHHHhHH----H
Confidence 333334444445555555555555554444444444444444333 33333333333333333222211 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVL 527 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~ 527 (771)
+..+++.|..++.. ....|..+..++.........+...+..++.........|.++...|.
T Consensus 78 l~rriq~LEeele~-------ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 78 LNRRIQLLEEELEE-------AEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44444444444444 444444444444444444444444455555544444444444444443
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.26 E-value=0.068 Score=52.38 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR 488 (771)
Q Consensus 409 eLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq 488 (771)
.+...+..+++++..+..+|.+|+.....++.++..+...+......+........ ..+++..+|+.+..++....
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~----~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS----NAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----hHHHHHhhHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444444333333322221 22256666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004160 489 QMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGT 536 (771)
Q Consensus 489 rrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~ 536 (771)
..+......+..+....+.++..+..+.......+..+..+...|...
T Consensus 94 ~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 94 KKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666666666666666543
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.26 E-value=0.031 Score=59.19 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160 490 MLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS 541 (771)
Q Consensus 490 rLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s 541 (771)
.++++..++..++....+++..+.++...+..++..+...+..+-.+.-.+.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433333333
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.23 E-value=0.088 Score=55.83 Aligned_cols=7 Identities=57% Similarity=0.729 Sum_probs=2.5
Q ss_pred hHHHhHH
Q 004160 372 LKDAQVE 378 (771)
Q Consensus 372 l~~a~~e 378 (771)
|++|+.+
T Consensus 33 l~k~~~e 39 (239)
T COG1579 33 LKKAKAE 39 (239)
T ss_pred HHHHHHH
Confidence 3333333
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.15 E-value=0.61 Score=55.34 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH
Q 004160 496 NEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM 575 (771)
Q Consensus 496 ~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI 575 (771)
.+....-..+..+...+.++...++.+++.+..+..+|..+.-...+. .++.++-..+ .+|.....+|
T Consensus 440 ~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs--------~Yt~RIlEIv----~NI~KQk~eI 507 (594)
T PF05667_consen 440 SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS--------AYTRRILEIV----KNIRKQKEEI 507 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHH----HhHHHHHHHH
Confidence 344444455555666666666667777776666666665554443332 3444454455 4444555555
Q ss_pred hhHh
Q 004160 576 GLEL 579 (771)
Q Consensus 576 eeeL 579 (771)
...|
T Consensus 508 ~KIl 511 (594)
T PF05667_consen 508 EKIL 511 (594)
T ss_pred HHHH
Confidence 3333
No 63
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.14 E-value=0.99 Score=55.30 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE 444 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE 444 (771)
|...+=.+..+++=.+++..++..|+.++.+.+.+..+.+.=.+.+..++......+.-
T Consensus 257 lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm 315 (1243)
T KOG0971|consen 257 LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM 315 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777788888889999999999999888888888888876655544433
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.10 E-value=0.0013 Score=78.22 Aligned_cols=239 Identities=18% Similarity=0.189 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE 458 (771)
Q Consensus 379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee 458 (771)
+..-+..+......+..|+++..=..+++.-|+.++.....+....... ......+..+..-...+......++..+..
T Consensus 387 ~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ele~~l~~ 465 (722)
T PF05557_consen 387 IEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPS-EQDTQRIKEIEDLEQLVDEYKAELEAQLEE 465 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc-hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455566677888888888888888888888877664333221 011111111111111112212222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHhhhhh
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLI--LQNELDGT 536 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~--~q~ELNe~ 536 (771)
+...+...+.........+.............+.....++..|...+..++.....+...+..++..|.. ++..|+..
T Consensus 466 l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~ 545 (722)
T PF05557_consen 466 LEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPS 545 (722)
T ss_dssp ----------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTT
T ss_pred HHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 3322222232222223333333322222222111222333334444444444444444444444444432 23556655
Q ss_pred hhhHHHH----------------HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHH
Q 004160 537 KLKVSEA----------------ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEI 600 (771)
Q Consensus 537 nIe~sQq----------------Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEq 600 (771)
+.++-.+ +.+....+.+..++..+. ..-..+.+-+ +. ........
T Consensus 546 ~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le----~~~~~~~~~~-----------p~----~~~~~~~~ 606 (722)
T PF05557_consen 546 KTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLE----EGNSQPVDAV-----------PT----SSLESQEK 606 (722)
T ss_dssp TEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTT-------------------------------H
T ss_pred CceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCCcccc-----------cc----hhhhhhHH
Confidence 5554444 455555556665554443 1111111111 00 11123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhh
Q 004160 601 ELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRL 637 (771)
Q Consensus 601 EleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~ 637 (771)
++..++..+..++..+..++.-.+.|-.|+..|+--+
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777777777766544
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.03 E-value=1.2 Score=52.91 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=45.4
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Q 004160 235 ANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLE 314 (771)
Q Consensus 235 an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~ 314 (771)
+..-+..-+.++..+...++....++.......+.-+.++..+++.+....-.|+.--++|+.--..+-....+....+.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555444444455555555555555555554444443333333333333333333
Q ss_pred hHH-------HHHHHHHHHHHHHhh
Q 004160 315 DFR-------RVKKLLSDVRSELVS 332 (771)
Q Consensus 315 df~-------rv~~ll~~vr~el~~ 332 (771)
+|- =+..|+..++.-+..
T Consensus 287 ~l~~~~~p~~l~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 287 ELAADPLPLLLIPNLLDSTKAQLQK 311 (650)
T ss_pred HHhcccCCHhhhHHHHHHHHHHHHH
Confidence 332 244455544444433
No 66
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.03 E-value=0.00038 Score=82.63 Aligned_cols=121 Identities=23% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh---hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHH
Q 004160 316 FRRVKKLLSDVRSELV---SSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEAR 392 (771)
Q Consensus 316 f~rv~~ll~~vr~el~---~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE 392 (771)
|+..|+=||.+|..-. --...+..||+++++- .-++.|+.+|+++-..++--...|++-.-.+..-+.++-..+..
T Consensus 293 a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~q 371 (713)
T PF05622_consen 293 ARALRDELDELREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQ 371 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555555666665432 2345678999999984 56889999999987655444444444443344444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR 437 (771)
Q Consensus 393 ~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqe 437 (771)
+.+|+..+.....++..+..++..+...+..+..+...+..+...
T Consensus 372 i~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~ 416 (713)
T PF05622_consen 372 IQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDS 416 (713)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665655555555555555555555555555444433
No 67
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.95 E-value=0.13 Score=50.66 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQ 464 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiE 464 (771)
+|..++.+...++..+..++.++...+..+.......++....+..|+.++..+..++..+...+..+..+...+....+
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq 90 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQ 90 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777777777766666666666666666666666666555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHhHH
Q 004160 465 NLKSKQASLQLILEEKD 481 (771)
Q Consensus 465 qLKsEIesLq~ELEEId 481 (771)
..+.+|..+.....++.
T Consensus 91 ~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 55555544444444444
No 68
>PRK11281 hypothetical protein; Provisional
Probab=96.92 E-value=0.46 Score=59.90 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 479 EIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
.++.++.-...++...+.++..-..+.+-+.-+..-+...+...+.++..+++.+|+.|.+.+++
T Consensus 196 ~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~ 260 (1113)
T PRK11281 196 LLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEK 260 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555566666777778888888889999999999999988888777
No 69
>PRK09039 hypothetical protein; Validated
Probab=96.91 E-value=0.092 Score=58.01 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 465 NLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 465 qLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
.++.....+...+.......++....+.-++.++.-|+.++..++..+..++....+...+|..+...|+.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444433
No 70
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=2 Score=53.53 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=62.8
Q ss_pred HHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ 511 (771)
Q Consensus 432 QeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq 511 (771)
..++..++......+..+....+...++..++..++..+..+...+..+...+....+...++...+..|...+.+....
T Consensus 380 ~~el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~ 459 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEE 459 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhh
Confidence 33445555555555555555555556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 512 LVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 512 LeEleeeLkEkEE~L~~~q~ELNe 535 (771)
+.+++..|.....++..++....+
T Consensus 460 ~~e~n~eL~~~~~ql~das~dr~e 483 (1141)
T KOG0018|consen 460 PYELNEELVEVLDQLLDASADRHE 483 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc
Confidence 666666666666666665554443
No 71
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.89 E-value=1.5 Score=51.63 Aligned_cols=192 Identities=16% Similarity=0.188 Sum_probs=106.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcc---hHHh
Q 004160 500 ELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPT---DDMG 576 (771)
Q Consensus 500 ELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlk---dEIe 576 (771)
........+.+++..+....+.....++-++..|.=..-.......+..+|..+........ ..+.+-. ..+.
T Consensus 303 ~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~----~~i~~~~~~yS~i~ 378 (560)
T PF06160_consen 303 YVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE----ERIEEQQVPYSEIQ 378 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCcCHHHHH
Confidence 34444455566666666666666666666666654444455555777777777777777655 2222211 1222
Q ss_pred hHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh
Q 004160 577 LELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND 656 (771)
Q Consensus 577 eeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d 656 (771)
..+ ..+...+..++.+...+.+.+..+..+=..++..++--...|-.+-+++.- --++.=|.+
T Consensus 379 ~~l---------~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek--------~nLPGlp~~ 441 (560)
T PF06160_consen 379 EEL---------EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEK--------SNLPGLPED 441 (560)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCCCCHH
Confidence 333 344455555666666666666666666666666665555555554444332 122333444
Q ss_pred HHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHHhHHHHHHHHHHHHHHhhcccc
Q 004160 657 LRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 657 ~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~aat~~l~kl~~~s~~~l~~~~~ 713 (771)
+...+..+...|... ...+.=-.+-..+..-.+.-|++.+..|-+.+.+++..|.|
T Consensus 442 y~~~~~~~~~~i~~l-~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L 497 (560)
T PF06160_consen 442 YLDYFFDVSDEIEEL-SDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATL 497 (560)
T ss_pred HHHHHHHHHHHHHHH-HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332210 01111122334555567888999999999999999999987
No 72
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.85 E-value=1.3 Score=53.59 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 349 HLLGKQLVELEEQKKSLTS 367 (771)
Q Consensus 349 ~~l~~q~~el~~q~~~~~s 367 (771)
.+|++++.+...+|.++..
T Consensus 491 ~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 73
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.79 E-value=2.3 Score=52.37 Aligned_cols=248 Identities=20% Similarity=0.200 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
|.+|+.+.+.+..|.-+...=+.++-+++ +.+=.++++++-.+.+- .....+++.+..-+.+..+++.-
T Consensus 230 r~QvrdLtEkLetlR~kR~EDk~Kl~Ele----kmkiqleqlqEfkSkim-------~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 230 RAQVRDLTEKLETLRLKRAEDKAKLKELE----KMKIQLEQLQEFKSKIM-------EQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444444443333 23333333333222222 23344556666666677777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE 542 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ 542 (771)
.++++.++.....-++-+.-.-+-+..+-+.+++++..++..+++++-.++=+.++..++= .+.-+.--.+|.|
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG------~~~~~~ss~qfkq 372 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG------SDGQAASSYQFKQ 372 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccchHHHHH
Confidence 7777778777777777766666666666777777777777777776666666655554431 1111122233333
Q ss_pred HHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 543 AETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRA 622 (771)
Q Consensus 543 qEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRa 622 (771)
++.--.|+.+--.+|-. +..+-..+. +-+.++.+-...++.++....+.+...+...|+.|.+++.+
T Consensus 373 lEqqN~rLKdalVrLRD-----------lsA~ek~d~--qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 373 LEQQNARLKDALVRLRD-----------LSASEKQDH--QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHHHHh-----------cchHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222221 111111111 22222223333444667777777777888888888888877
Q ss_pred cccchHHHHHHHhhhhhh----HHHHHhHHhhhhChhhHHHHH
Q 004160 623 LTVKDEELKTVLGRLDAK----EKELKKLEETVEDANDLRKLY 661 (771)
Q Consensus 623 L~~kd~elk~~~~~~~~~----~~el~~~~~~~~d~~d~~~~~ 661 (771)
.|+-=-- .+.+.-|++| |.-++-|||++.|-..+..+-
T Consensus 440 VDAAlGA-E~MV~qLtdknlnlEekVklLeetv~dlEalee~~ 481 (1243)
T KOG0971|consen 440 VDAALGA-EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMN 481 (1243)
T ss_pred HHHhhcH-HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7653110 1222333333 455556677777666555443
No 74
>PRK09039 hypothetical protein; Validated
Probab=96.75 E-value=0.25 Score=54.72 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHH
Q 004160 472 SLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQI 550 (771)
Q Consensus 472 sLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRI 550 (771)
..+.....+..+|........+..+++..|+.++..+..++..++..+...+......+..+..+...+..+ ..-+..+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666666666666666666666666666666666666666665555555555555444444 1223344
Q ss_pred HHHHHHH
Q 004160 551 VDLTHKL 557 (771)
Q Consensus 551 eeLt~eL 557 (771)
..+..+.
T Consensus 193 ~~~~~~~ 199 (343)
T PRK09039 193 NRYRSEF 199 (343)
T ss_pred HHhHHHH
Confidence 4444444
No 75
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.72 E-value=0.63 Score=47.95 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=36.4
Q ss_pred HHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 434 ELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN 495 (771)
Q Consensus 434 ELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr 495 (771)
.|..++..=.++-..|....+++-.|+..+..++.....+...+.+.+.++..+...+..+.
T Consensus 48 AL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 48 ALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555566666666666666666666666666666666666665555555443
No 76
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.69 E-value=1.3 Score=56.03 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 479 EIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
.++.+..-...++..++.+......+.+-..-+..-++..+...+.+++.+++.+|..|.+-+++
T Consensus 177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555566666666666666666666777777788888888888888877776666
No 77
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.61 E-value=0.52 Score=46.52 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 401 SMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEK 480 (771)
Q Consensus 401 lqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEI 480 (771)
+...+++...+...+.++.....+..++...+.+...+..+-......+..++.++..+......+...+.++..+...+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333333333333333333333333333333333333333333333333333
Q ss_pred H
Q 004160 481 D 481 (771)
Q Consensus 481 d 481 (771)
.
T Consensus 86 ~ 86 (140)
T PF10473_consen 86 D 86 (140)
T ss_pred H
Confidence 3
No 78
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.61 E-value=2.4 Score=50.29 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=52.3
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHH
Q 004160 314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERV 384 (771)
Q Consensus 314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~ 384 (771)
.||.|..++|+++-.+|--=|+..--||+..-+...--+++.-|.. .-+...-|+.+|.||-+=..
T Consensus 15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k-----~k~~~~llK~yQ~EiD~Ltk 80 (629)
T KOG0963|consen 15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDK-----LKMVNPLLKSYQSEIDNLTK 80 (629)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999888888888776643 23444567777888765443
No 79
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.59 E-value=0.46 Score=48.91 Aligned_cols=139 Identities=24% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----HHHHHHHHHHHH
Q 004160 477 LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLK-----VSEAETVVEQIV 551 (771)
Q Consensus 477 LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe-----~sQqEtl~eRIe 551 (771)
|..+...-+.+-+-+..-.+++..|+..+....+....++..+++.+.++.-..+.+..+.-= +..-+.+..++.
T Consensus 49 L~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~ 128 (194)
T PF15619_consen 49 LQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLS 128 (194)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 333333334444444444555555555555555556666666666665555555555432211 111155666666
Q ss_pred HHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Q 004160 552 DLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDE 628 (771)
Q Consensus 552 eLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~ 628 (771)
.++..+.... ..|..+.-.++-.- ..+..++..-......+...+..+.+++..++..+..||-
T Consensus 129 ~~~~~l~~~~----~ki~~Lek~leL~~---------k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 129 QLEQKLQEKE----KKIQELEKQLELEN---------KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666554 33333332221111 3333444444444444444455555555555544444443
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.49 E-value=1.3 Score=45.81 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=112.2
Q ss_pred HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160 365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE 444 (771)
Q Consensus 365 ~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE 444 (771)
++|-..+|....-...++-.+|-. .+...+.--.++..+|..++.++...++.++.. +.++.++..
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~---~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a-----------K~l~eEled 71 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQR---SVETAEEGNAQLAEEITDLRKQLKSLQQALQKA-----------KALEEELED 71 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 455555666655555555444432 223333333344445555555555444333222 223455555
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE 524 (771)
Q Consensus 445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE 524 (771)
+...+..++.....|...-.+++.+...+...++.++++-..+....+.++-....|......+..++-+++.-+...+.
T Consensus 72 Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da 151 (193)
T PF14662_consen 72 LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDA 151 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666667777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhh
Q 004160 525 HVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVIS 560 (771)
Q Consensus 525 ~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s 560 (771)
.+..-....+++..-+-.+ +++.-.|.++.++|..+
T Consensus 152 ~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 152 ILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777766667776555444 67777777777777543
No 81
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.47 E-value=2.3 Score=52.17 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 450 eelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
+..++.-...+++.+.++..++.+.....++-.+...+...++.-..-+...+....++.+.++++..+....+-..
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~ 489 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT 489 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555544444444444444444444444444444444433333
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.41 E-value=3.2 Score=49.46 Aligned_cols=225 Identities=20% Similarity=0.180 Sum_probs=125.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 004160 335 KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSM----EKELVEEL 410 (771)
Q Consensus 335 ~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlq----lekeIeeL 410 (771)
+.+..+.++|.+.....+....+++.+-..-..-+.-|.||..-|.-=..-+.....+..+|..+--. +..++..+
T Consensus 352 ~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 352 KMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777888888888888888888877666666667776655522222222223333333333322 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 411 QNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE--IQNLKSKQASLQLILEEKDFELSNAR 488 (771)
Q Consensus 411 r~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e--iEqLKsEIesLq~ELEEIdeELeeiq 488 (771)
+........+......++..++.+++.+..++...+..+..+..++..+-.. ...+..+|-..-..|..=+.+|..+-
T Consensus 432 k~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl 511 (594)
T PF05667_consen 432 KEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL 511 (594)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333334444444455555555555555555555555544444444433 33445555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HHHHHHHHHHHHHHhh
Q 004160 489 QMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-------ETVVEQIVDLTHKLVI 559 (771)
Q Consensus 489 rrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-------Etl~eRIeeLt~eLe~ 559 (771)
.....++.+++.+...++.--....++==.=-.+++....+.--|..++-.|.++ -++.+.|-++..+|..
T Consensus 512 ~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 512 SDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666666666666665555333322222222226677777777788888888887 3677788888888774
No 83
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.40 E-value=3 Score=49.06 Aligned_cols=362 Identities=19% Similarity=0.230 Sum_probs=189.5
Q ss_pred HHhHhhHHHHH-HHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHH
Q 004160 100 EILESDLQAVL-AALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIED 178 (771)
Q Consensus 100 ~~l~s~~~~~l-~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~ 178 (771)
+-+..++.-.. ..+-.=|+.|-+||.- .+..++..|+..+..-+..|..+-.....+..+|...-..=-.+-..|..
T Consensus 63 e~w~~~w~~i~~~~~~~ie~~L~~ae~~--~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~ 140 (560)
T PF06160_consen 63 EEWRQKWDEIVTKQLPEIEEQLFEAEEY--ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEE 140 (560)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444554444 4566667888888876 68899999999999999999999999999999999887777778888999
Q ss_pred HHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH
Q 004160 179 LKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE 258 (771)
Q Consensus 179 lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~ 258 (771)
|+...+.--+.+.+-...++.-...+++.=.++-..-.+...+- . ..=-.+|.+++..-+..+..|..-+..-=.
T Consensus 141 l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt----~-~GD~~~A~eil~~l~~~~~~l~~~~e~IP~ 215 (560)
T PF06160_consen 141 LKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELT----E-NGDYLEAREILEKLKEETDELEEIMEDIPK 215 (560)
T ss_pred HHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHH----H-CCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999998888888887766544433222221111 0 112346777777777777777666654332
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhH
Q 004160 259 ELEASVALRKVEEEKLKVVEANLEKRT--MEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS 336 (771)
Q Consensus 259 ~~~~~~~~~k~~~ekl~~~e~~le~~~--~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~ 336 (771)
=+......=--.=+.|+-.=..+..+. ..-+-.-.+++.+.+........++.. ++..|...++.+-.++-.--..
T Consensus 216 l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~ 293 (560)
T PF06160_consen 216 LYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDI 293 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 222211110000111111112222211 111223344444443333333333221 4445555555444444333222
Q ss_pred H---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 337 L---ASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE 413 (771)
Q Consensus 337 ~---~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~q 413 (771)
| ..+|..++..-..+...+.++..+=.-++.=+..+...=.=-.++.... ..+..++..+.+....+...
T Consensus 294 le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~-------~~l~~~l~~l~~~~~~~~~~ 366 (560)
T PF06160_consen 294 LEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV-------RELEKQLKELEKRYEDLEER 366 (560)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 2 2456666666666666666655554444332222222211112222222 33333333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 414 LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 414 LqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~EL 477 (771)
+......+-.+...+..+...+..++.+...+...+..+...-..++..+..++..+......+
T Consensus 367 i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 367 IEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444443333
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.34 E-value=3.7 Score=50.47 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 004160 694 TSALQKLTEMSGELLN 709 (771)
Q Consensus 694 t~~l~kl~~~s~~~l~ 709 (771)
+.|..-|+.-|+.|=+
T Consensus 797 m~aI~~Lv~as~~lQ~ 812 (980)
T KOG0980|consen 797 MEAIMALVKASRELQT 812 (980)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556665655543
No 85
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.27 E-value=5.4 Score=50.62 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=67.5
Q ss_pred HhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 004160 231 MLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKV---EEEKLKVVEANLEKRTMEWLLSQDALK---KLAEEASR 304 (771)
Q Consensus 231 ~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~---~~ekl~~~e~~le~~~~~wl~~q~elk---~l~~~a~k 304 (771)
-..++++-+..-+++++.|...++.++++++....-..- ..+|+-...+.|+.+..+.-+.=+..+ +..++.|+
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~ 574 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSK 574 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhH
Confidence 345556666666777777777777777777655322211 244555556666666665554333333 33445555
Q ss_pred hhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhH
Q 004160 305 RMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQV 377 (771)
Q Consensus 305 ~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~ 377 (771)
.+....+-..|| .+-.+.|..|...+.--.++...-......|.-++.+-+.-+-.=+.+|..++.
T Consensus 575 ~iq~~~e~~~~~-------~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~ 640 (1317)
T KOG0612|consen 575 QIQQELEENRDL-------EDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLK 640 (1317)
T ss_pred HHHHHhhccccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555444422222 223333444444444333333333333333333444444444444444444433
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.23 E-value=0.71 Score=50.54 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH-HHHHHHHHHHHHHHHHHH
Q 004160 320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE-SERVKLRVTEARNKELER 398 (771)
Q Consensus 320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~-~~~~~l~~aqsE~kELEr 398 (771)
.++++.+...|...-..|..-...+.....++...+..+...+..|+.=..+|+.+..++. .-..+|+.++.++..+..
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 5788889988888888888888888888888888888888888888888888888887766 345566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160 399 DLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN 439 (771)
Q Consensus 399 qLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqele 439 (771)
.+...+.++..++.++......++.+..++..+..++..++
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665555555555555555443
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.02 E-value=5.1 Score=48.04 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004160 323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDA 375 (771)
Q Consensus 323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a 375 (771)
|..+..|-----..+...+..+.+.-.+|..++..|..-+...++....|+.-
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~s 58 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERS 58 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444555555555566666666666666665555555443
No 88
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.96 E-value=5.2 Score=47.67 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 322 LLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLT 366 (771)
Q Consensus 322 ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~ 366 (771)
=+++++.++.++-..++..|.+++.+-..++.++.+...+...+.
T Consensus 245 ~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 245 SLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666677777788888888888888777777765444
No 89
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.92 E-value=2.6 Score=46.18 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 004160 348 EHLLGKQLVELE 359 (771)
Q Consensus 348 ~~~l~~q~~el~ 359 (771)
-..++.++.-+.
T Consensus 83 l~~l~~~~~~l~ 94 (423)
T TIGR01843 83 AAELESQVLRLE 94 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333344433333
No 90
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.87 E-value=3.4 Score=44.76 Aligned_cols=158 Identities=12% Similarity=0.181 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN 465 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq 465 (771)
+....+.+.+++.....++++|..|.+++............++...+.++..++.+|..+...|...+..+..=-.....
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777777777777777777777777777777777777777777776655544332111110
Q ss_pred HH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160 466 LK------------SKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL 533 (771)
Q Consensus 466 LK------------sEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~EL 533 (771)
-- ..+..+-.++--+..=+.--..-+.........|+.....+++.+..+.....+.+..+..+.++.
T Consensus 113 nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk 192 (265)
T COG3883 113 NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK 192 (265)
T ss_pred cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011122222222222222223333334444445555555555555555555555555555555555
Q ss_pred hhhhhhHHHH
Q 004160 534 DGTKLKVSEA 543 (771)
Q Consensus 534 Ne~nIe~sQq 543 (771)
++.+.-+..+
T Consensus 193 ~e~~~l~~~~ 202 (265)
T COG3883 193 AEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=5.2 Score=48.97 Aligned_cols=101 Identities=19% Similarity=0.263 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHH
Q 004160 314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARN 393 (771)
Q Consensus 314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~ 393 (771)
+..+---+=|.--+.+|-+-=.-+.|+..||.+|--.|+.|+--.. ...-+|.+-.++ ....-..|+.++.++
T Consensus 674 e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~---~~~~~~~q~~e~----~~t~~eel~a~~~e~ 746 (970)
T KOG0946|consen 674 ENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS---SKQRDLLQGAEA----SKTQNEELNAALSEN 746 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchhhHHhHHHh----ccCChHHHHHHHHHH
Confidence 3333344445556667776667777777777777777777765221 111122221111 233445677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 394 KELERDLSMEKELVEELQNELNKEKYSL 421 (771)
Q Consensus 394 kELErqLlqlekeIeeLr~qLqkekqeL 421 (771)
+.+..+.--+.+++......+...+..-
T Consensus 747 k~l~~~q~~l~~~L~k~~~~~es~k~~~ 774 (970)
T KOG0946|consen 747 KKLENDQELLTKELNKKNADIESFKATQ 774 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8887777777777765555555544443
No 92
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.69 E-value=4 Score=44.72 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 407 VEELQNELNKEKYSLQQAIDEVSSLQE 433 (771)
Q Consensus 407 IeeLr~qLqkekqeLEelqeEIesLQe 433 (771)
+..++.++...+.++..+..++...+.
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~ 172 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQ 172 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 93
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.67 E-value=9.2 Score=48.31 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=5.9
Q ss_pred ChhhHHHHHHHH
Q 004160 653 DANDLRKLYALA 664 (771)
Q Consensus 653 d~~d~~~~~~~~ 664 (771)
....+..|+.+.
T Consensus 875 ~~~~~~~L~~l~ 886 (1047)
T PRK10246 875 QVEDWGYLNSLI 886 (1047)
T ss_pred HHHHHHHHHHHh
Confidence 334455555554
No 94
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=3 Score=45.21 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=41.1
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHH
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKEL 644 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el 644 (771)
..+......++.....++..+..+-....++|..+..+...+ .|++.++.-+-+.+...
T Consensus 151 e~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk----~e~~~l~~~~aa~~a~~ 209 (265)
T COG3883 151 EQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQK----AEKNALIAALAAKEASA 209 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 555566667777777777788887778887777776666554 56777777777755443
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.59 E-value=2.3 Score=40.87 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH 525 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~ 525 (771)
+..++.++..++..+..+......+...+..... ....+...++..+.++...+.++..+
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~---sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEA---SWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333333333333333 22233333444444444444444433
No 96
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.53 E-value=8.1 Score=46.69 Aligned_cols=35 Identities=40% Similarity=0.426 Sum_probs=25.8
Q ss_pred HhhhhChhhHHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHH
Q 004160 648 EETVEDANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEA 692 (771)
Q Consensus 648 ~~~~~d~~d~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~a 692 (771)
+..-+..++++.=|..+|| +|+.|+-++++++++-
T Consensus 721 e~e~nr~~~~~~e~~~~qe----------E~~~l~~r~~~le~e~ 755 (961)
T KOG4673|consen 721 EKERNRAAENRQEYLAAQE----------EADTLEGRANQLEVEI 755 (961)
T ss_pred HHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 5555677888888888875 4777888888877664
No 97
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.51 E-value=4.9 Score=44.13 Aligned_cols=205 Identities=21% Similarity=0.287 Sum_probs=109.2
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 004160 326 VRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLS---M 402 (771)
Q Consensus 326 vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl---q 402 (771)
-|-||+.-=.++++-|...-.+..-+-.+..++-.+|.-+.-=..-|++=+-++-++...|+ +.+..+.+... .
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~---~~~~~l~e~~~~~~~ 104 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR---KEYRELKEKRNEFNL 104 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhc
Confidence 34666666677888888888888888888888888888888877777777777766665543 33333333333 1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 403 EKELVEELQNELNKEKYSLQ----------QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQAS 472 (771)
Q Consensus 403 lekeIeeLr~qLqkekqeLE----------elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIes 472 (771)
---.+..++..+..+..-.+ .+...+..|..++... ....+....+..+..+...+...-..+..+|..
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~-~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA-KKALEENEKLKELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333333332222 1223344445544332 222233334444444444444444444444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160 473 LQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS 541 (771)
Q Consensus 473 Lq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s 541 (771)
+-++.+++-.++...-+..+ ++....+.+-....++..+.++..+.+...+++|.+++..+.
T Consensus 184 la~eaqe~he~m~k~~~~~D-------e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 184 LANEAQEYHEEMIKLFEEAD-------ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444 444444444444555555555555555555555555554444
No 98
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.45 E-value=7.7 Score=45.93 Aligned_cols=171 Identities=27% Similarity=0.313 Sum_probs=108.0
Q ss_pred hHHHHHHHhhhhHHHH-HhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhH
Q 004160 155 HEKLEEELGQSNLKLV-SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN 233 (771)
Q Consensus 155 ~~~~e~~l~~~~~~l~-~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~ 233 (771)
...++++++.--.+.. +.+.+|++++...++-...|. .....+.+..-+.+-+..|-.-.--.--.-+.+++|.|-+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~-e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~- 292 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN-EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHM- 292 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHH-
Confidence 3567778876555555 499999999999999999998 5566777777777777766554444555566777776654
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Q 004160 234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTL 313 (771)
Q Consensus 234 ~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~ 313 (771)
+..|..|+++|++||++++.....++ .|.++. |+. .=++
T Consensus 293 ---------~~~l~~l~~Eie~kEeE~e~lq~~~d-----------~Lk~~I--------e~Q-------------~iS~ 331 (581)
T KOG0995|consen 293 ---------EKKLEMLKSEIEEKEEEIEKLQKEND-----------ELKKQI--------ELQ-------------GISG 331 (581)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--------Hhc-------------CCCH
Confidence 45688999999999999876543221 221111 111 2234
Q ss_pred HhHHHHH-------HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 314 EDFRRVK-------KLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSY 368 (771)
Q Consensus 314 ~df~rv~-------~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~ 368 (771)
+||+|.. .-|+.+.+++-.=.+..=.-.-+++++-..+++++.++..+.--+..-
T Consensus 332 ~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 332 EDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 233444444444444444445567777778888888887765544433
No 99
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.44 E-value=11 Score=47.41 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
+|..++.+..+|+.....-+..+..|.-.++++.+..+..
T Consensus 182 eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 182 ELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544443
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.41 E-value=3.8 Score=46.77 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=9.8
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q 004160 339 SSRKQMEEQEHLLGKQLVEL 358 (771)
Q Consensus 339 ~sr~~~e~q~~~l~~q~~el 358 (771)
+++.-++.|-..++.++.+.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~a 180 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555554444
No 101
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.39 E-value=4.5 Score=42.88 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=23.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEV 428 (771)
Q Consensus 372 l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEI 428 (771)
++++..++.+..-.++..+.....++..+..+..++..+..+.......-..+....
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t 82 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNT 82 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444433333333333333
No 102
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.38 E-value=4.2 Score=42.44 Aligned_cols=190 Identities=17% Similarity=0.198 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160 406 LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELS 485 (771)
Q Consensus 406 eIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELe 485 (771)
.|..+...+..++..++..+.........+......-.+....+..+++....+..+++.+...+....-.-++-+.+..
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555444444454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhc
Q 004160 486 NARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 486 eiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~ 561 (771)
+..++|. .+...+...+...+-..+...++++.+..+.+.+..+...--.+ ++....|..++..|....
T Consensus 85 EVarkL~-------iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 85 EVARKLV-------IIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred HHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 5555554 44444445555555555555555555555555554444433333 566777777777776554
Q ss_pred cCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 562 KNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMK 612 (771)
Q Consensus 562 ~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEk 612 (771)
....+.+... ..|.++++.++..+-.....|..+...|.+.
T Consensus 158 --------~rAE~aERsV--akLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 158 --------TRAEFAERRV--AKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred --------hhHHHHHHHH--HHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1122336666 7778888888777777777776666655443
No 103
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=9.2 Score=46.96 Aligned_cols=17 Identities=41% Similarity=0.427 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004160 344 MEEQEHLLGKQLVELEE 360 (771)
Q Consensus 344 ~e~q~~~l~~q~~el~~ 360 (771)
-++|...-++-+.++-+
T Consensus 641 ee~~~~~~~k~~e~l~~ 657 (970)
T KOG0946|consen 641 EEEQTQLAEKYHEELDD 657 (970)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 34444444444444433
No 104
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.34 E-value=4.4 Score=42.44 Aligned_cols=64 Identities=19% Similarity=0.111 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 480 IdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
+..++.-....+..++.++.....+.+-+.-....+...+...+..+..+++.+|..+..-++.
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~ 218 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQ 218 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444555555666666666777777777777666655544
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=8.8 Score=45.48 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhccc
Q 004160 697 LQKLTEMSGELLNKAS 712 (771)
Q Consensus 697 l~kl~~~s~~~l~~~~ 712 (771)
-+|++.+--.+++...
T Consensus 537 r~ki~~ql~~~i~~i~ 552 (581)
T KOG0995|consen 537 RQKIAKQLFAVIDQIS 552 (581)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666665543
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.22 E-value=6.1 Score=43.41 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH
Q 004160 337 LASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE 378 (771)
Q Consensus 337 ~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e 378 (771)
...+|.-+.+.+...- .+.=.++--|+.+=.+.+..
T Consensus 84 I~egr~~~~~~E~~~~------~~nPpLf~EY~~a~~d~r~~ 119 (325)
T PF08317_consen 84 ISEGRQIFEEIEEETY------ESNPPLFREYYTADPDMRLL 119 (325)
T ss_pred HHHHHHHHHHHHHHHh------hcCCHHHHHHHcCCHHHHHH
Confidence 4455555555444432 22233555677765554443
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.22 E-value=4.5 Score=41.88 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 508 REEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 508 LEgqLeEleeeLkEkEE~L 526 (771)
++..+..+.+.+...+.++
T Consensus 148 LEkKl~~l~~~lE~keaqL 166 (201)
T PF13851_consen 148 LEKKLQALSEQLEKKEAQL 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 108
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.12 E-value=2.6 Score=46.45 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491 (771)
Q Consensus 435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrL 491 (771)
+..+..++......+....+.+..++.++..+...|+.....+.++..+|..+.+.+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444433
No 109
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.88 E-value=5.7 Score=41.30 Aligned_cols=187 Identities=16% Similarity=0.157 Sum_probs=90.7
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 328 SELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELV 407 (771)
Q Consensus 328 ~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeI 407 (771)
|+|+|+=..|..+-++..++-..|+-.+.-.++==.-+.. ++..=+.+++-. ..+-...-.+..++
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~----------e~~~L~~q~~s~----Qqal~~aK~l~eEl 69 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAE----------EITDLRKQLKSL----QQALQKAKALEEEL 69 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5677777888888877777777777666554442221111 111111111111 11112222234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 408 EELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNA 487 (771)
Q Consensus 408 eeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeei 487 (771)
+++......++.....+...-..+..+-+.+..++..++..-..+..+...++.+..++......++..+=.+..=+..-
T Consensus 70 edLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~ 149 (193)
T PF14662_consen 70 EDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR 149 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160 488 RQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLI 528 (771)
Q Consensus 488 qrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~ 528 (771)
..-+.+....+..++.-+..+-.-..++......+++++.+
T Consensus 150 da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 150 DAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555543
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.85 E-value=7.9 Score=42.76 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHH
Q 004160 416 KEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKL 461 (771)
Q Consensus 416 kekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~ 461 (771)
.+...++.+..+...|...+..++.-+-.+....+.++.++..++.
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444433333334444444444444444333
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.85 E-value=12 Score=44.94 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 319 VKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELER 398 (771)
Q Consensus 319 v~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELEr 398 (771)
..+||..+.|+-+..--| -.|-..|+.||.||.+-=..+. ..++. -..-.+++.--.+.+...+.+++.
T Consensus 141 ~~kLLe~lqsdk~t~SRA--------lsQN~eLK~QL~Elq~~Fv~lt--ne~~e-lt~~lq~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 141 RQKLLEQLQSDKATASRA--------LSQNRELKEQLAELQDAFVKLT--NENME-LTSALQSEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHhhhcccchHHHHH--------HHhHHHHHHHHHHHHHHHHHHH--HhhhH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566888887776654333 3456689999999987443333 22211 112233333333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 399 DLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILE 478 (771)
Q Consensus 399 qLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELE 478 (771)
.+-.+...+......+..+.+....+...+.......+.+..+...+.+.+-....-+..++....+-+-.++....++.
T Consensus 210 ~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq 289 (617)
T PF15070_consen 210 KLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQ 289 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555555555544444444444433333333333333333444444444333333344444433333333334444444
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 004160 479 EKDFELSNARQMLEELNN 496 (771)
Q Consensus 479 EIdeELeeiqrrLeeLr~ 496 (771)
...+.|......-..++.
T Consensus 290 ~~qe~Lea~~qqNqqL~~ 307 (617)
T PF15070_consen 290 EAQEHLEALSQQNQQLQA 307 (617)
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 444444444444433333
No 112
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.69 E-value=2.4 Score=42.44 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ 432 (771)
Q Consensus 391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ 432 (771)
.+..+.+..+..+..++..++..+..+...+.....+.....
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444444444444444444443333333
No 113
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.67 E-value=6.7 Score=41.12 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 322 LLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLS 401 (771)
Q Consensus 322 ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl 401 (771)
.+..|+.|+.++......-++++++. .......+..|..|.......=.+.+.. -.....++..+....-
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~-------~~~~~~m~~i~~e~Ek~i~~~i~e~~~~---~~~~~~~i~~~~~erd 79 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEEL-------HKENQEMRKIMEEYEKTIAQMIEEKQKQ---KELSEAEIQKLLKERD 79 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHhh---HHhHHHHHHHHHhhHH
Confidence 45667777777776666666665543 3445567888888888665544333222 3344677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 402 MEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 402 qlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEId 481 (771)
++...+..++.....+-.+++....-+..++..-..+...+.+....+....+.+..|+.. ....+.....+|..+.
T Consensus 80 q~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h---AeekL~~ANeei~~v~ 156 (207)
T PF05010_consen 80 QAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH---AEEKLEKANEEIAQVR 156 (207)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999998888888888889999998888888888654 3466666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 482 FELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLIL 529 (771)
Q Consensus 482 eELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~ 529 (771)
......+.+++..+......+.+++..+.+-+....++....+++
T Consensus 157 ---~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 157 ---SKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred ---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888889999999999999888888876665544
No 114
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.62 E-value=11 Score=43.38 Aligned_cols=178 Identities=16% Similarity=0.256 Sum_probs=93.9
Q ss_pred HhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------HHHhHH
Q 004160 314 EDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL---------------KDAQVE 378 (771)
Q Consensus 314 ~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l---------------~~a~~e 378 (771)
+..+.++.=+..|.-+|+.|...+.-.+++|.+....|..=...-..||..+--|...+ ++|+-.
T Consensus 66 ~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~~ 145 (420)
T COG4942 66 KQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRS 145 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhHH
Confidence 34444555566677778888888888888887777766543333355555444332221 233322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE 458 (771)
Q Consensus 379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee 458 (771)
+.. .+-++..-....+.-..+......|...+..+...+.++.....+. ..+...+...+.+-.+....++..+..
T Consensus 146 ~R~-ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq---~~q~~kl~~~~~E~kk~~~~l~~~l~~ 221 (420)
T COG4942 146 VRL-AIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ---RAQQAKLAQLLEERKKTLAQLNSELSA 221 (420)
T ss_pred HHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1233444444444555555555566666666666666655554443 233333333444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELN 495 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr 495 (771)
-+.+++++...-..+...|..+..+....+..-++.+
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~ 258 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAE 258 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555666655555554444444333
No 115
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.53 E-value=16 Score=44.97 Aligned_cols=237 Identities=21% Similarity=0.162 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERD 399 (771)
Q Consensus 320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErq 399 (771)
+.+|+||+..|-....+....+-.... ..-..-|.++-.++..-...|..|-..|.--..-|...-.-|..+-..
T Consensus 457 ~~ILedI~~al~~~~~~~~~~~~~~~~-----~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsg 531 (769)
T PF05911_consen 457 SEILEDIEIALDSINNSSNCDDDSEEY-----ESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSG 531 (769)
T ss_pred HHHHHHHHHHHHhhccccccccccchh-----hhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 367777777776555443333322221 123345566666666666677777766644455555555556665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHH-------hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 400 LSMEKELVEELQNELNKEKYSLQQAID---EVSSLQEELGRK-------NTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 400 LlqlekeIeeLr~qLqkekqeLEelqe---EIesLQeELqel-------ekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
...+++.|.++..-++..-..-..+.. ..+.++..+... .............+..+++.+......+...
T Consensus 532 kadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~ 611 (769)
T PF05911_consen 532 KADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEME 611 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665555544333222222 333333332211 1111223334445556666666666666666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH------
Q 004160 470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA------ 543 (771)
Q Consensus 470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq------ 543 (771)
+...+..++....+|.+....+..++.++..++.....++.++.-..+.++.++.++..+..+++.+..++..+
T Consensus 612 L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 612 LASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777777777777777777777777777777777777777777777777777666666665
Q ss_pred -----HHHHHHHHHHHHHHhhhc
Q 004160 544 -----ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 544 -----Etl~eRIeeLt~eLe~s~ 561 (771)
.+...+-.++..+|+...
T Consensus 692 er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 692 ERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHhcchhhhhHHHHHHHHHHhhh
Confidence 233344445555555443
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.49 E-value=4.1 Score=39.19 Aligned_cols=108 Identities=23% Similarity=0.310 Sum_probs=70.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHH---hhhHHHhHHHHHHHHHHHHHHHhhhhh
Q 004160 259 ELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEE---TNDTLEDFRRVKKLLSDVRSELVSSQK 335 (771)
Q Consensus 259 ~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~---~~~~~~df~rv~~ll~~vr~el~~s~~ 335 (771)
++.........-..++..+..+|+.+.--|=.||.= ...+..+|... +...=++|-.++.-+...+.+.-+++.
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~---YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK---YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444567888889999999999888863 34444444443 333345566667777777777778888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 336 SLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYM 369 (771)
Q Consensus 336 ~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~ 369 (771)
.|..++..+++|...|++++.++.....-+...+
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777777766665555554443
No 117
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.46 E-value=11 Score=44.32 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhH---H
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ-------MLEELNNEVRELKMIMSSR---E 509 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr-------rLeeLr~ELkELKslIesL---E 509 (771)
..+.++...+......+.++...+..+.+.++.--.+++++..++..+.. .++++...+..++..+..+ +
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~ 345 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD 345 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH
Confidence 33444444444444444444444444444443333444444444444443 2333333333333333332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004160 510 EQLVQAMDTLQEKDEHVLILQNELDGTKLK 539 (771)
Q Consensus 510 gqLeEleeeLkEkEE~L~~~q~ELNe~nIe 539 (771)
+.+.++...+......+...-..|+..|.+
T Consensus 346 ~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 118
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.34 E-value=21 Score=45.34 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 587 GNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKR 621 (771)
Q Consensus 587 ereeLeeel~eLEqEleelReeLrEkE~eLrelrR 621 (771)
..+.+...+..+++.+......+..+...+.....
T Consensus 823 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 857 (1047)
T PRK10246 823 TVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDAD 857 (1047)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777666666555433
No 119
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.15 E-value=14 Score=44.66 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=8.6
Q ss_pred HHhHHHHHHHHHHHHHHHh
Q 004160 313 LEDFRRVKKLLSDVRSELV 331 (771)
Q Consensus 313 ~~df~rv~~ll~~vr~el~ 331 (771)
-.|=.+...+++.|=...+
T Consensus 163 ~~dP~~Aa~iaN~la~~Y~ 181 (754)
T TIGR01005 163 SEDPKLAAAIPDAIAAAYI 181 (754)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3344444455554444443
No 120
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.14 E-value=9.2 Score=40.57 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhHHHHHHHhH
Q 004160 325 DVRSELVSSQKSLASSRKQM 344 (771)
Q Consensus 325 ~vr~el~~s~~~~~~sr~~~ 344 (771)
++..+|......+...+.++
T Consensus 28 ~~~~~L~~~~~~~~~~~~~~ 47 (264)
T PF06008_consen 28 DLTNQLRSYRSKLNPQKQQL 47 (264)
T ss_pred HHHHHHHHHhccchhHHHHH
Confidence 44444444444444433333
No 121
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.12 E-value=9.5 Score=43.50 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.3
Q ss_pred cCCcch
Q 004160 568 TSMPTD 573 (771)
Q Consensus 568 I~qlkd 573 (771)
|..+-+
T Consensus 319 I~AP~d 324 (457)
T TIGR01000 319 IKAPED 324 (457)
T ss_pred EECCCC
Confidence 333333
No 122
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.10 E-value=8.9 Score=40.24 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160 544 ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL 623 (771)
+++..-++++..++.... .....++.+....| .... .++..-...+..+.-.++..|+.-++.+..+.+.+
T Consensus 114 E~Lkk~~~ey~~~l~~~e----qry~aLK~hAeekL--~~AN---eei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L 184 (207)
T PF05010_consen 114 ETLKKCIEEYEERLKKEE----QRYQALKAHAEEKL--EKAN---EEIAQVRSKHQAELLALQASLKKEEMKVQSLEESL 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666555 44444445544444 3333 33334445667777788888888888888888877
Q ss_pred ccchHHH
Q 004160 624 TVKDEEL 630 (771)
Q Consensus 624 ~~kd~el 630 (771)
..|..|.
T Consensus 185 eQK~kEn 191 (207)
T PF05010_consen 185 EQKTKEN 191 (207)
T ss_pred HHHHHHH
Confidence 7776553
No 123
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.02 E-value=6.9 Score=41.00 Aligned_cols=27 Identities=22% Similarity=0.011 Sum_probs=17.9
Q ss_pred hhhhhhhhHhhhhHHHHHHHHcCcccc
Q 004160 742 LTEVGSEVARLSVLTEQLVKEAGIVDG 768 (771)
Q Consensus 742 ~~~~~~~v~~l~~lt~ql~~~ag~~~~ 768 (771)
......+|.-|.-=-.||..--||...
T Consensus 254 ~~~f~~~v~lLn~nI~~L~~~q~~~~~ 280 (302)
T PF10186_consen 254 RQRFEYAVFLLNKNIAQLCFSQGIDVP 280 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344556677777777777776676654
No 124
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.01 E-value=25 Score=45.03 Aligned_cols=309 Identities=19% Similarity=0.215 Sum_probs=152.7
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHH-hHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-
Q 004160 197 LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQM-LNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKL- 274 (771)
Q Consensus 197 ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~-l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl- 274 (771)
|..|..|.+... ..-.+|-.--||.+.|+|. |..||--.-|-+.-.++|+.-|+.--.=|. ..++--+-+
T Consensus 1424 l~~~~ae~eq~~----~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt----~~~adp~si~ 1495 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTL----SMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLT----QPDADPDSIE 1495 (1758)
T ss_pred HHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCHHHHH
Confidence 333444554433 3334566666888888874 667888888888888898888875432221 111111111
Q ss_pred HHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHhh------H-HhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Q 004160 275 KVVEANLEKRTMEWL-LSQDALKKLAEEASRRM------E-ETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEE 346 (771)
Q Consensus 275 ~~~e~~le~~~~~wl-~~q~elk~l~~~a~k~~------~-~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~ 346 (771)
-||+.-|.. || +.-+++--|.......+ + =+..|--|..|+..|+.+-+. | |+.-++
T Consensus 1496 ~vA~~vL~l----~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~---------a--~~~A~~ 1560 (1758)
T KOG0994|consen 1496 EVAEEVLAL----ELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAER---------A--RSRAED 1560 (1758)
T ss_pred HHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHH---------H--HhHHHH
Confidence 133333332 22 12223333332221111 1 134566677777776654321 1 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAID 426 (771)
Q Consensus 347 q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqe 426 (771)
-..+.+.=++ .+.--....-.|+--|++--..++.+++.+-..++...-.+..+.....++..+...++.+..
T Consensus 1561 v~~~ae~V~e-------aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1561 VKGQAEDVVE-------ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111122233344455555555555555555555555555555555555555555555444444
Q ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 427 EVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMS 506 (771)
Q Consensus 427 EIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIe 506 (771)
+ ..+...+-.+.++..-.....-.+++...+.+++..+.....++..-+.-...+++.+.++++-..|-..-.
T Consensus 1634 ~-------~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1634 K-------AAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred H-------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4 333333334444444455555555555555666666666666666666666666666666666665555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160 507 SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE 542 (771)
Q Consensus 507 sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ 542 (771)
..-+.+.+++..+...+..|.....+|..++.++.+
T Consensus 1707 ~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1707 EKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence 555555555555555555555555555555544433
No 125
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=19 Score=43.81 Aligned_cols=370 Identities=19% Similarity=0.181 Sum_probs=185.3
Q ss_pred chHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhH--hHHHHHHhH--HHHHHHHHhhHHHHHHHhhhhHHHHHh
Q 004160 97 LNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR--AKEELLRRE--REIDVACSRHEKLEEELGQSNLKLVSQ 172 (771)
Q Consensus 97 ~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~--~k~~l~~re--~~i~~a~~~~~~~e~~l~~~~~~l~~q 172 (771)
..++-|..++.-.+..+.+-..+|.-+.-.|......+-. --+.|...- ..=..+..+ .++..-.+++.
T Consensus 167 ~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~~~~~~-------~~~lee~~~~~ 239 (698)
T KOG0978|consen 167 EELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRKTMESDEAINSKK-------VIKLEEKLAQC 239 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccccchhhhhhccch-------HHHHHHHHHHH
Confidence 3455666666666666666666664444444332222110 012222211 111112222 33444456666
Q ss_pred hhhhHHHHHHhhhhH------HHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHH-----------
Q 004160 173 ARHIEDLKLRLKERD------QEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEA----------- 235 (771)
Q Consensus 173 ~~~i~~lk~~~~~~~------~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~a----------- 235 (771)
+.+-+++........ ..|.+.-..|+....+++++-.+++.+..+.+-=-+.++...+-+...
T Consensus 240 ~~e~~~l~~~~e~~~~~~~~~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~~~~~~~~~~e~l 319 (698)
T KOG0978|consen 240 VKEYEMLRKEFENNKSQNDLFSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAADSLESKSRDLESL 319 (698)
T ss_pred HHHHHHHHHhHHHhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666666665554443 445566677888888888888888776655544444444433332221
Q ss_pred --------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhH
Q 004160 236 --------NEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRME 307 (771)
Q Consensus 236 --------n~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~ 307 (771)
++--..+...+-.+++..+.+..-+. ...--..+..=+.++...+-+. -|+... .++-+-....--.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~k~~di~~~k~el~~~--~~~~le-~~k~~~ke~~~~~~ 395 (698)
T KOG0978|consen 320 LDKIQDLISQEAELSKKLRSKLLESAKKLKILLR-EKDRESQKERDILVAKSELLKT--NELRLE-MLKSLLKEQRDKLQ 395 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHhhhhHhHHHHHHHHHHH--HHHHHH-HHhCCCHHHHhHHH
Confidence 22222222222233333333333332 1111223333455566555554 344332 23333222222111
Q ss_pred --HhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHhHHHH
Q 004160 308 --ETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSR-KQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK----DAQVEVE 380 (771)
Q Consensus 308 --~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr-~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~----~a~~e~~ 380 (771)
-..++...-.|++.+..+-|+++.--..-++..| .+..++..-|++...... -+.+=|+..- +-|..+.
T Consensus 396 ~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k----~ll~e~~t~gsA~ed~Qeqn~ 471 (698)
T KOG0978|consen 396 VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFK----CLLSEMETIGSAFEDMQEQNQ 471 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999998763333333221 255566666666666665 3344444444 4445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHH
Q 004160 381 SERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAK 460 (771)
Q Consensus 381 ~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq 460 (771)
.-.++|+.....++.+=...-.......-|+...+.+....-.+......+...+..++....-+......+..++..+.
T Consensus 472 kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~ 551 (698)
T KOG0978|consen 472 KLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLT 551 (698)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHH
Confidence 55666777777777776666666666666666666665555555555555555555444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 004160 461 LEIQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 461 ~eiEqLKsEIesLq~ELEEId 481 (771)
..++..+.....+......++
T Consensus 552 ~~le~~kk~~~e~~~~~~~Lq 572 (698)
T KOG0978|consen 552 QSLEMLKKKAQEAKQSLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333
No 126
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.90 E-value=8.2 Score=42.70 Aligned_cols=24 Identities=46% Similarity=0.515 Sum_probs=21.4
Q ss_pred hHhhHHHHHHHHHhhhhhHHHHHH
Q 004160 102 LESDLQAVLAALKKKEEDLEDAER 125 (771)
Q Consensus 102 l~s~~~~~l~~l~~ke~~l~~ae~ 125 (771)
--.|+.|+..-|..||+||..|-+
T Consensus 60 ty~Didavt~lLeEkerDLelaA~ 83 (306)
T PF04849_consen 60 TYNDIDAVTRLLEEKERDLELAAR 83 (306)
T ss_pred chhhHHHHHHHHHHHhhhHHHHHH
Confidence 577999999999999999998865
No 127
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.90 E-value=5.6 Score=46.55 Aligned_cols=136 Identities=21% Similarity=0.209 Sum_probs=98.6
Q ss_pred HHHhhhHHHhHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhH
Q 004160 367 SYMTSLKDAQVEVESERVKLRVTEAR---NKELERDLS-MEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEF 442 (771)
Q Consensus 367 s~~~~l~~a~~e~~~~~~~l~~aqsE---~kELErqLl-qlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekEL 442 (771)
+.-.+|+.-..|+...|.+.-.++.+ +-+.+++++ .+.+++-....+......+++.++++...+++++..+...+
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566556666666665555544 345566666 78888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 443 GETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK 502 (771)
Q Consensus 443 qElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK 502 (771)
..+++++.-..-+.+.+..-+..++..-..++.++.++.++..+.-..+.+...+++.|-
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888888888877777777777777777777777777777777777666666665553
No 128
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.85 E-value=11 Score=41.92 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=15.4
Q ss_pred hChhhHHHHHHHHhhhhcccccc
Q 004160 652 EDANDLRKLYALAQERFGEKSVG 674 (771)
Q Consensus 652 ~d~~d~~~~~~~~~e~~~~~~~~ 674 (771)
...+|++-|...=-|+|-+|+|-
T Consensus 272 ~s~sdLksl~~aLle~indK~~a 294 (319)
T PF09789_consen 272 QSISDLKSLATALLETINDKNLA 294 (319)
T ss_pred chHHHHHHHHHHHHHHhhhHHHH
Confidence 45677777777667777776553
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.78 E-value=1.2 Score=45.42 Aligned_cols=106 Identities=25% Similarity=0.287 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 394 KELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL 473 (771)
Q Consensus 394 kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesL 473 (771)
..+...++.+..++..+......+.+++..+...+..+...+......+..+...+..++..+..+...+.....-++.+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444333333333333333333333333333333333333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 474 QLILEEKDFELSNARQMLEELNNEVR 499 (771)
Q Consensus 474 q~ELEEIdeELeeiqrrLeeLr~ELk 499 (771)
+-++..+.-+++....++..+..|..
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 130
>PRK11281 hypothetical protein; Provisional
Probab=93.53 E-value=30 Score=44.43 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 357 ELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDL 400 (771)
Q Consensus 357 el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqL 400 (771)
.|.+...-+-.|...|-.++..-++-.+.+..++.+..++.+++
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444666777777777766666666666666666666544
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.51 E-value=18 Score=41.74 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQL----VELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELER 398 (771)
Q Consensus 323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~----~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELEr 398 (771)
...+++=|..+=-++++|...+..+-.++++++ .++.+++...-.....|++...++.+=+.+|......+..+..
T Consensus 15 ~~~~~~~l~~~~~~~s~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 15 TILLASLLSAAVLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHHHHHHHhcccccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 445566666665566666444443333332222 2333333333444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 004160 399 DLSMEKELVEELQNEL 414 (771)
Q Consensus 399 qLlqlekeIeeLr~qL 414 (771)
+|..++..+..++.+.
T Consensus 95 ~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 95 QIADLNARLNALEVQE 110 (420)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 132
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.22 E-value=19 Score=44.34 Aligned_cols=224 Identities=21% Similarity=0.217 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHH
Q 004160 252 VIQEKEEELEASVALRKVEEEKLKV---VEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRS 328 (771)
Q Consensus 252 ~~~~ke~~~~~~~~~~k~~~ekl~~---~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~ 328 (771)
-++.+-+++.....-.--+.-.|.. --..++. ...|..... .++............+..++|..++.--..+-.
T Consensus 534 dLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~-~f~~~ss~e--~E~~~~dea~~~~~~el~eelE~le~eK~~Le~ 610 (769)
T PF05911_consen 534 DLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKK-NFDGDSSSE--AEINSEDEADTSEKKELEEELEKLESEKEELEM 610 (769)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-hhhhccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444444544 2223333 366766653 333334466777788889999999999999999
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 329 ELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVE 408 (771)
Q Consensus 329 el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIe 408 (771)
+|.++++-+..++-++.+-+..|..-..+|+..+.|-.-|..-|+....-.++-.+++..++.++. .+..+|.
T Consensus 611 ~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~-------~l~~Ki~ 683 (769)
T PF05911_consen 611 ELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAE-------ELQSKIS 683 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHH
Confidence 999999999999999999999888887787777766665555555544444444444444444444 4555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR 488 (771)
Q Consensus 409 eLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq 488 (771)
.|+.++.+.+..-..+...-..|+.++.....+... .... +.-..+ .-..+|...-..+.+.+.-|..+-
T Consensus 684 ~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~--~~~~---~~~~k~-----kqe~EiaaAA~KLAECQeTI~sLG 753 (769)
T PF05911_consen 684 SLEEELEKERALSEELEAKCRELEEELERMKKEESL--QQLA---NEDKKI-----KQEKEIAAAAEKLAECQETIASLG 753 (769)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccch--hhcc---cccccc-----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444444444432211100 0000 000001 112355555566666666666666
Q ss_pred HHHHHHH
Q 004160 489 QMLEELN 495 (771)
Q Consensus 489 rrLeeLr 495 (771)
+.|.++.
T Consensus 754 kQLksLa 760 (769)
T PF05911_consen 754 KQLKSLA 760 (769)
T ss_pred HHHHhcC
Confidence 6666554
No 133
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=31 Score=43.72 Aligned_cols=254 Identities=20% Similarity=0.224 Sum_probs=151.3
Q ss_pred HHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhh-----hhhHHHHHHhhhhHHHHHHHHHh
Q 004160 122 DAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQA-----RHIEDLKLRLKERDQEIAAMQSA 196 (771)
Q Consensus 122 ~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~-----~~i~~lk~~~~~~~~~~~~~~~~ 196 (771)
-||..+.....+......++..-...+..| -+|..+-++..++.+.+++-. +.|+.+...|.....+|.++...
T Consensus 171 kAE~~t~~~~~kkk~I~aEkk~aK~~k~ea-eky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~ 249 (1141)
T KOG0018|consen 171 KAEETTTGNYKKKKSIAAEKKEAKEGKEEA-EKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKER 249 (1141)
T ss_pred HHHHHHhhHhhhhhHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhh
Confidence 344444444444444444443333344444 456788888888888776643 67889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHH------HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH---
Q 004160 197 LSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNE------ANEVVKKQETEIQSLRKVIQEKEEELEASVALR--- 267 (771)
Q Consensus 197 ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~------an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~--- 267 (771)
+..+..++...|.+.-+-..+...++..|..|+..|.+ +-+-+..--+.+.+.+..|.-.+.+......--
T Consensus 250 ~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ 329 (1141)
T KOG0018|consen 250 MDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERL 329 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Confidence 99999999999999989999999999999999888776 111111112334444444444443333222111
Q ss_pred ----HHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhH
Q 004160 268 ----KVEEEKLKVVEANLEKRTMEWL-------LSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKS 336 (771)
Q Consensus 268 ----k~~~ekl~~~e~~le~~~~~wl-------~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~ 336 (771)
+.=.-+-.--+.+.+...-.|+ ..-+|-..|.+.|++...+=-.++. | .+..--.+-+.
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~~ln---~-------~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELEVLN---R-------NMRSDQDTLDH 399 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHhh
Confidence 1111122223344444444465 3345666777777776511111111 1 11111112222
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHH
Q 004160 337 LASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKL 386 (771)
Q Consensus 337 ~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l 386 (771)
.-.-+...|+--..+..++.++..+|.-++-+.+++...-.|+.....+|
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l 449 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSL 449 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Confidence 23345556666677777888888888888888888877777766554443
No 134
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.13 E-value=20 Score=41.10 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
+++-...+.+...+.+.+.....++..+..+-+++.+++-++..+...+..+.+.+..+-.+++.....+..+.-+|..+
T Consensus 115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r 194 (499)
T COG4372 115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR 194 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555555666666666666666666666666666655555555555444444444444444444444333
No 135
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=93.02 E-value=17 Score=40.20 Aligned_cols=96 Identities=24% Similarity=0.305 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHH
Q 004160 377 VEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL 456 (771)
Q Consensus 377 ~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnEL 456 (771)
..|+-.+.+|..++.++...+..+...+.++..++..+..++..++....+...++.+.......+.-....+.-+.++.
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 34455555555555555555555555555555555555555555555555555555555554455555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 004160 457 VEAKLEIQNLKSKQAS 472 (771)
Q Consensus 457 eeLq~eiEqLKsEIes 472 (771)
......+..+......
T Consensus 294 ~RW~~~~~~l~~~~~~ 309 (344)
T PF12777_consen 294 ERWSEQIEELEEQLKN 309 (344)
T ss_dssp HCCHCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcc
Confidence 5554444444444433
No 136
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.00 E-value=17 Score=40.08 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=35.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 472 SLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV----QAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 472 sLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe----EleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
.++.-|.+|...+..-...-..+..+-..|...+..+-++.+ .+...++.++-.++-....|...+....+.
T Consensus 111 kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e 186 (309)
T PF09728_consen 111 KFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQE 186 (309)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444555555554444444444444444444444443333 455555555555555555555544444333
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.99 E-value=1.9 Score=47.45 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=21.5
Q ss_pred ChhhHHHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHHhHHHHHHHHHHHHHH
Q 004160 653 DANDLRKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEAATSALQKLTEMSGEL 707 (771)
Q Consensus 653 d~~d~~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~aat~~l~kl~~~s~~~ 707 (771)
||..++-||.....+||..|+. +--. .-+.=|.|++.|.---+-+
T Consensus 260 ~~~~~~lPy~i~~~~I~~~si~--------~~~~--~~~~WT~AlK~lLtnlKw~ 304 (314)
T PF04111_consen 260 DPQSFELPYKIDKDKIGGVSIK--------LQFN--SEEEWTKALKYLLTNLKWL 304 (314)
T ss_dssp HH-----SS-ECTTEECTCES---------STTS---HHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceeccCCccCCeeee--------ecCC--ChhHHHHHHHHHHHHHHHH
Confidence 4447778888887777777653 0001 2235677877765443333
No 138
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.76 E-value=4.4 Score=42.97 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQN 465 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEq 465 (771)
+|..-.++..+...+.+....+..-..-|....++.+.+..+....-++|.+++..+..++..|...+.+....+..+..
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555666666665555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhHH
Q 004160 466 LKSKQASLQLILEEKD 481 (771)
Q Consensus 466 LKsEIesLq~ELEEId 481 (771)
+..++..+...+++++
T Consensus 86 ~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 86 LYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555554444444
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.54 E-value=15 Score=38.41 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530 (771)
Q Consensus 451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q 530 (771)
....+...++.++..++..+.....+++..+.++...+..+......+............+..+....+......+..+.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444443333334444444455555555555554444444
Q ss_pred Hhhhh
Q 004160 531 NELDG 535 (771)
Q Consensus 531 ~ELNe 535 (771)
..+..
T Consensus 140 ~~l~~ 144 (302)
T PF10186_consen 140 SQLAR 144 (302)
T ss_pred HHHHH
Confidence 44333
No 140
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.41 E-value=28 Score=42.18 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHh
Q 004160 321 KLLSDVRSELVSSQKSLASSRKQ 343 (771)
Q Consensus 321 ~ll~~vr~el~~s~~~~~~sr~~ 343 (771)
.=|..+|.+|..+..+++.+|.+
T Consensus 201 ~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 201 PEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888888888888764
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.34 E-value=6.9 Score=45.19 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 357 ELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELG 436 (771)
Q Consensus 357 el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELq 436 (771)
-|+.||+...+||..+..||+ ++-+..+..+-.+..+++..... ++...+..+..+.+++..+..+.+++.
T Consensus 329 qleSqr~y~e~~~~e~~qsql--en~k~~~e~~~~e~~~l~~~~~~-------~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQL--ENQKQYYELLITEADSLKQESSD-------LEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888877777443 33344444444444444443333 333333444444444444444555444
Q ss_pred H
Q 004160 437 R 437 (771)
Q Consensus 437 e 437 (771)
.
T Consensus 400 ~ 400 (493)
T KOG0804|consen 400 E 400 (493)
T ss_pred H
Confidence 3
No 142
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.32 E-value=16 Score=38.22 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=17.0
Q ss_pred HHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Q 004160 307 EETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQ 347 (771)
Q Consensus 307 ~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q 347 (771)
...+.++.++..--++|++.. .++.....+++.|..-
T Consensus 14 ~~~~~~i~~l~~al~~L~~~~----~~~~~~~~~~~~i~~a 50 (240)
T PF12795_consen 14 PEQKALIQDLQQALSFLDEIK----KQKKRAAEYQKQIDQA 50 (240)
T ss_pred hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 444455555555555554432 2334444444444433
No 143
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.13 E-value=45 Score=42.88 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=44.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHH-----HHHHHhHHHHHHH
Q 004160 276 VVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSL-----ASSRKQMEEQEHL 350 (771)
Q Consensus 276 ~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~-----~~sr~~~e~q~~~ 350 (771)
.+-++| .+++.||..-++.+.-++...+.+++.-..+. .++.+|-.-+... ..|-.+.|.+-.+
T Consensus 45 ~~~~~l-~~tl~~l~~~~~~~~~~~~~~~~i~~ap~~~~----------~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~ 113 (1109)
T PRK10929 45 EIVEAL-QSALNWLEERKGSLERAKQYQQVIDNFPKLSA----------ELRQQLNNERDEPRSVPPNMSTDALEQEILQ 113 (1109)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence 344455 67889998777766655555544444333322 2222222111111 1124667777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 351 LGKQLVELEEQKKSLTSYM 369 (771)
Q Consensus 351 l~~q~~el~~q~~~~~s~~ 369 (771)
...+++++.++-....+..
T Consensus 114 ~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 114 VSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 7777777777666555554
No 144
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=92.09 E-value=48 Score=43.07 Aligned_cols=123 Identities=18% Similarity=0.235 Sum_probs=57.9
Q ss_pred hhhhhhhhccCCCCCCcccccCc--hHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHH-HhHHHHHHH
Q 004160 75 QTQKLEERMSRDSGVGKDVQFGL--NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELL-RREREIDVA 151 (771)
Q Consensus 75 ~t~~l~~~~~~~~~l~~~~~~~~--~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~-~re~~i~~a 151 (771)
.+++....++++.+.-.+..+.+ +++.+--++.--+..+.++++.++--+..+-.-.+..+ .++. ..+.++
T Consensus 546 ~~~k~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~---~~~e~~~~e~~--- 619 (1294)
T KOG0962|consen 546 ELRKIKSRLSDEKGRAIEFPLTNDRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIR---KDLEDRKEEEL--- 619 (1294)
T ss_pred HHHHHHHhcchhhhhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHH---
Confidence 45555555666555554544555 45555554544444444444444332222222211111 1111 111111
Q ss_pred HHhhHHHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHH
Q 004160 152 CSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKM 207 (771)
Q Consensus 152 ~~~~~~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~ 207 (771)
...+..++.-+...++--..|+.|+...++.-+..++++.....=.-=++.+
T Consensus 620 ----k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~ 671 (1294)
T KOG0962|consen 620 ----KSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIA 671 (1294)
T ss_pred ----HHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 1123334444444455556667777777777777777775544433333333
No 145
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.97 E-value=36 Score=41.44 Aligned_cols=467 Identities=19% Similarity=0.237 Sum_probs=204.8
Q ss_pred HHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 004160 205 EKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKR 284 (771)
Q Consensus 205 ~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~ 284 (771)
++++.++--|-++++.+-.-+..|+.-+..-.=-+..----+..|+-..+.--+-|-.|+.-+..-...|-.+-..|.+-
T Consensus 229 eey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~ 308 (786)
T PF05483_consen 229 EEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQES 308 (786)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444455544444444444333322222222222333333333333334444444444444444444444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160 285 TMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKS 364 (771)
Q Consensus 285 ~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~ 364 (771)
....-.-+.+|.-.......-.++--..|+||.+++-.-..|-.++-.+=-+|.++=.. =+..+..+++|=+.
T Consensus 309 ~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~-------Eqqr~~~~ed~lk~ 381 (786)
T PF05483_consen 309 ESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTT-------EQQRLKKNEDQLKI 381 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHH
Confidence 22222222333333333344444555678899999888877777776655555443211 12233445554433
Q ss_pred HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHH
Q 004160 365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGE 444 (771)
Q Consensus 365 ~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqE 444 (771)
++- .|..--.+++.-+.. ..+++++ +-.+...++.... +-..+..++.+...+..-.+++.. -+..
T Consensus 382 l~~---eLqkks~eleEmtk~-----k~~ke~e--leeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~---llq~ 447 (786)
T PF05483_consen 382 LTM---ELQKKSSELEEMTKQ-----KNNKEVE--LEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTG---LLQI 447 (786)
T ss_pred HHH---HHHHhhHHHHHHHHH-----hhhhHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 332 222111222211111 1112221 2222333333332 222223344444443333333322 3556
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----
Q 004160 445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ---- 520 (771)
Q Consensus 445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk---- 520 (771)
.++.+..++..+.........+...+..+..+++.-..+-.++......+..+...+......+--.+..+.+.+.
T Consensus 448 ~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~ 527 (786)
T PF05483_consen 448 REKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKK 527 (786)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6666666777777776666666666666666666544444444444444444444443333332222222222111
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHH
Q 004160 521 EKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLE 599 (771)
Q Consensus 521 EkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLE 599 (771)
..+..+.++.. |..++..+.+- +++...+..--.++..-....+.+.. .+.-.. ...++..--++..++-+.
T Consensus 528 qee~~~kqie~-Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r----~~e~e~--~~k~kq~k~lenk~~~Lr 600 (786)
T PF05483_consen 528 QEEKMLKQIEN-LEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENAR----SIECEI--LKKEKQMKILENKCNNLR 600 (786)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH----HHHHHH--hhhHHHHHHHHHHHHHHH
Confidence 11111111111 22233222222 34444443333333321100000000 011111 222233344556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH----Hhhh-hChhhHHHHHHHHhhhhcccccc
Q 004160 600 IELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL----EETV-EDANDLRKLYALAQERFGEKSVG 674 (771)
Q Consensus 600 qEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~----~~~~-~d~~d~~~~~~~~~e~~~~~~~~ 674 (771)
..++.....+.++..+-..+++..++-+--+...=.+....+.|+..+ +|.+ .=-.|+-.=..++.+-.|
T Consensus 601 KqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~----- 675 (786)
T PF05483_consen 601 KQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLG----- 675 (786)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence 777777777777777777788888777776666666666666666554 2222 111122111222211112
Q ss_pred hhHHHHHhHHHhhH---HHHHhHHHHHHHHHHHHH
Q 004160 675 DLAIERLQLEAAQL---EVEAATSALQKLTEMSGE 706 (771)
Q Consensus 675 ~~~~~~l~~eaa~~---e~~aat~~l~kl~~~s~~ 706 (771)
+++|+..-|++. --+.-.-.=+|+|+|.+=
T Consensus 676 --EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVAL 708 (786)
T PF05483_consen 676 --EVEKAKLTADEAVKLQEETDLRCQHKIAEMVAL 708 (786)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 477777665543 223334456899999863
No 146
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=91.42 E-value=26 Score=38.67 Aligned_cols=145 Identities=13% Similarity=0.124 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160 461 LEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKM-------IMSSREEQLVQAMDTLQEKDEHVLILQNEL 533 (771)
Q Consensus 461 ~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKs-------lIesLEgqLeEleeeLkEkEE~L~~~q~EL 533 (771)
.+..++...+.....+++-...+|.........-......++. .+..+...-.++...+.-..+.|+..++-|
T Consensus 153 ~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL 232 (309)
T PF09728_consen 153 LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTL 232 (309)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666666666666666666 555555555566666666666666656665
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 004160 534 DGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLR 610 (771)
Q Consensus 534 Ne~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~~qeLekereeLeeel~eLEqEleelReeLr 610 (771)
+.-|--|. ++...|.+.+..+..+. .+...|...- ...| ..+ -.+......++..+...+.
T Consensus 233 ~kSNe~F~---tfk~Emekm~Kk~kklE----KE~~~~k~k~e~~n~~l--~~m-------~eer~~~~~~~~~~~~k~~ 296 (309)
T PF09728_consen 233 NKSNEVFE---TFKKEMEKMSKKIKKLE----KENQTWKSKWEKSNKAL--IEM-------AEERQKLEKELEKLKKKIE 296 (309)
T ss_pred HHhHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHH--HHH-------HHHHHHHHHHHHHHHHHHH
Confidence 55555554 55666777777777666 6666666544 4455 333 3445556666666666666
Q ss_pred HHHHHHHHHHH
Q 004160 611 MKEMEVLAAKR 621 (771)
Q Consensus 611 EkE~eLrelrR 621 (771)
.++.=.++++.
T Consensus 297 kLe~LcRaLQ~ 307 (309)
T PF09728_consen 297 KLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHhh
Confidence 66666665554
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.32 E-value=36 Score=40.11 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004160 594 QTKQLEIELKFARENLRMKEMEVLAAKRALT 624 (771)
Q Consensus 594 el~eLEqEleelReeLrEkE~eLrelrRaL~ 624 (771)
.+..++.++...+..+..+-..|...|+..+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a 377 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRKAA 377 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666665554443
No 148
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.29 E-value=7.9 Score=43.58 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=40.2
Q ss_pred HHHHHhhhHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 365 LTSYMTSLKDAQVEVESERVKLRV-TEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS 429 (771)
Q Consensus 365 ~~s~~~~l~~a~~e~~~~~~~l~~-aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe 429 (771)
++.-..+-.+=++||++=.-+|+. ++...+.+..-+-+...-...+...+...+..|..+..++.
T Consensus 186 i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~ 251 (359)
T PF10498_consen 186 IIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDIS 251 (359)
T ss_pred cccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333445566667888888888863 35556677766666666666666655555555555554433
No 149
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.21 E-value=33 Score=39.41 Aligned_cols=146 Identities=14% Similarity=0.164 Sum_probs=68.3
Q ss_pred HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHhhhHHHH
Q 004160 369 MTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE---LGRKNTEFGET 445 (771)
Q Consensus 369 ~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE---LqelekELqEl 445 (771)
.+|+.-|+-+.-.-..+-+..+.+++.|-.++-+++.+.-.+.++...+.-.-.++..+.-.|..+ +.+-...+..-
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r 208 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATR 208 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666777777777777666666666655555554433443333333322 22222333333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160 446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ 514 (771)
Q Consensus 446 ekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE 514 (771)
...++....++.......++....|......|...+.++..-...+.+-...+..++.....++....+
T Consensus 209 ~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~ 277 (499)
T COG4372 209 ANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444333333333333333333333333333333333
No 150
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=52 Score=41.65 Aligned_cols=62 Identities=23% Similarity=0.264 Sum_probs=48.1
Q ss_pred hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhh
Q 004160 576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDA 639 (771)
Q Consensus 576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~ 639 (771)
...+ ..|.+..+..+..+....+++...+..++..+.++....+.....-.|++++=+....
T Consensus 677 ~~~~--~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~ 738 (1200)
T KOG0964|consen 677 RSEL--KELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSR 738 (1200)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5566 6777777788888888888888899999999998888888877777777766554433
No 151
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.98 E-value=15 Score=35.61 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 492 EELNNEVRELKMIMSSREEQLVQAMDTLQEKD 523 (771)
Q Consensus 492 eeLr~ELkELKslIesLEgqLeEleeeLkEkE 523 (771)
.+++..+..+=.++....+..+++...+.+..
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 152
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.85 E-value=0.13 Score=61.53 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 004160 526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVI 559 (771)
Q Consensus 526 L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~ 559 (771)
+.-+...+..++-++.....+..++..+..+-..
T Consensus 310 ~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~ 343 (713)
T PF05622_consen 310 ADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAV 343 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444554544445555555444444433
No 153
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.60 E-value=53 Score=40.82 Aligned_cols=337 Identities=19% Similarity=0.246 Sum_probs=178.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhHH
Q 004160 190 IAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEE-ELEASVALRK 268 (771)
Q Consensus 190 ~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~-~~~~~~~~~k 268 (771)
..-...+||-|-.+|-..-.++-+|+.+..-+++++. ++|.+||+--++-+--++.++.....+-. -++++.
T Consensus 150 lh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~---tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~---- 222 (1265)
T KOG0976|consen 150 LHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQ---TKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHK---- 222 (1265)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH----
Confidence 3344566777777777777777777887777777775 45677777766666666666665544322 122221
Q ss_pred HHHHHHHHHH--HHHh--hhHHHHHHHH-HHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHH-----------HHHhh
Q 004160 269 VEEEKLKVVE--ANLE--KRTMEWLLSQ-DALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVR-----------SELVS 332 (771)
Q Consensus 269 ~~~ekl~~~e--~~le--~~~~~wl~~q-~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr-----------~el~~ 332 (771)
...---+|.+ -.|. +|+|.-+-.- -=+++.-.+.--..+++-++|.+++--++.|.+=- .||--
T Consensus 223 ~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~ 302 (1265)
T KOG0976|consen 223 DQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDT 302 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1111111111 1111 1222111100 01122222222334556666666666666555432 33333
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 333 SQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN 412 (771)
Q Consensus 333 s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~ 412 (771)
-++.-+.+=..+++-..-+.--.-++.-|+.-+ -..|..|+.-++|=-.+++ +|+.+.-.+.-.+-.++.
T Consensus 303 lkqt~t~a~gdseqatkylh~enmkltrqkadi---rc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e 372 (1265)
T KOG0976|consen 303 LKQTRTRADGDSEQATKYLHLENMKLTRQKADI---RCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQE 372 (1265)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHH
Confidence 344444433344444444444444555554433 2445555555555444444 455555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENL---LRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ 489 (771)
Q Consensus 413 qLqkekqeLEelqeEIesLQeELqelekELqEleke---IeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr 489 (771)
.+.+.+..++.+......+++++..+++-+.-+... .+...+++.....+...|...+.-+...+..+..=.+...-
T Consensus 373 ~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aeg 452 (1265)
T KOG0976|consen 373 KKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEG 452 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhh
Confidence 666667777777777777777777766666555443 45556666666666677777766666666654433332221
Q ss_pred H----HHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 490 M----LEELNNEVRELKMIMSS------REEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 490 r----LeeLr~ELkELKslIes------LEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
. |+.-..-+.-+..++++ .+.+++.+..+.......+..+..++.++++.+.+.
T Consensus 453 srrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~e 516 (1265)
T KOG0976|consen 453 SRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSE 516 (1265)
T ss_pred hHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111222233333333 234556666666667777777888888877777665
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.60 E-value=23 Score=36.69 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH
Q 004160 401 SMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKE 453 (771)
Q Consensus 401 lqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelE 453 (771)
..+..+|..++.....++..+..+..+-..|..-+.....+..++.+.+....
T Consensus 30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444333
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.60 E-value=5.8 Score=43.66 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 004160 544 ETVVEQIVDLTHKLVIS 560 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s 560 (771)
.++..++....++|..+
T Consensus 116 ~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555553
No 156
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.53 E-value=33 Score=38.33 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 589 DNFRLQTKQLEIELKFARENLRMKEMEVLAAKR 621 (771)
Q Consensus 589 eeLeeel~eLEqEleelReeLrEkE~eLrelrR 621 (771)
--+.+.++.++.+...++..|.-+..-+...++
T Consensus 199 RyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~ 231 (319)
T PF09789_consen 199 RYLKERLKQLQEEKELLKQTINKYKSALERKRK 231 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346778888888888888888888887766444
No 157
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.36 E-value=33 Score=38.04 Aligned_cols=124 Identities=10% Similarity=0.113 Sum_probs=79.8
Q ss_pred HhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 004160 438 KNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVR-----------ELKMIMS 506 (771)
Q Consensus 438 lekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELk-----------ELKslIe 506 (771)
+.+.+.++...++.+..+-.-|..+++.=+..-+.++.+++++...|+.+....+.-..-.. +--...+
T Consensus 54 ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqd 133 (305)
T PF14915_consen 54 LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQD 133 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHH
Confidence 34566677777777777777777777777777777777777777777766655443222111 1122222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-----------HHHHHHHHHHHHHHhhhc
Q 004160 507 SREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-----------ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 507 sLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-----------Etl~eRIeeLt~eLe~s~ 561 (771)
.+-..+..+...-.-+.++|..+...+|.+.+++|.. +++++.+.+-..++..+.
T Consensus 134 kmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e 199 (305)
T PF14915_consen 134 KMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE 199 (305)
T ss_pred HhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666667778888999999999999999988 455555555555544433
No 158
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.93 E-value=18 Score=41.90 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
++.+.++-++.+..+...++.+......+..-++..+..++..+..++.+
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ke 397 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKE 397 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666655555444444444444444444444333
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.77 E-value=17 Score=44.55 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=28.4
Q ss_pred HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 368 YMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE 433 (771)
Q Consensus 368 ~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQe 433 (771)
|+..+..|+.+++....-|....+ ..-..+..+.+++..++..-.++..+++...+....|.+
T Consensus 552 Yi~~~~~ar~ei~~rv~~Lk~~~e---~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLLKQQKE---QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666554333332222 223333444444444444444444444444444333333
No 160
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.62 E-value=53 Score=39.31 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=23.1
Q ss_pred hhhhhhhhhhHhhhhHHHHHHHHcCcccc
Q 004160 740 ECLTEVGSEVARLSVLTEQLVKEAGIVDG 768 (771)
Q Consensus 740 ~~~~~~~~~v~~l~~lt~ql~~~ag~~~~ 768 (771)
+-|.+.++.|-+.-.|.+|=+..+-+.++
T Consensus 567 ~qik~lq~av~~~~~~~~q~~~s~e~~~~ 595 (772)
T KOG0999|consen 567 DQIKHLQKAVDHTKELSRQRIASQELGPA 595 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 67888899999999999988877655554
No 161
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=89.60 E-value=48 Score=38.75 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=96.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHh
Q 004160 375 AQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES 454 (771)
Q Consensus 375 a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEn 454 (771)
-+-|++.=|+.+--.+++...++-+++.++.+|.+++.++-.+.+. .+.++..+..++.....-+..++.
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~----------~~~q~~~~h~~ka~~~~~~~~l~~ 376 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA----------GQTQIFRKHPRKASILNMPLVLTL 376 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------hHHHHHHhhhHhhhhhhchHHHHH
Confidence 3567777777777778888888888888888888888888777665 334444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 455 DLVEAKLEIQNLKSKQASLQLI----LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530 (771)
Q Consensus 455 ELeeLq~eiEqLKsEIesLq~E----LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q 530 (771)
.++-+..+-+-...+....... |-+.+.+|..+..++. ........+.+.+-..+++.-+.++-.+|....
T Consensus 377 ~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~-----~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~ 451 (554)
T KOG4677|consen 377 FYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLK-----LRAWNDSVDALFTTKNQLTYTLKQKQIGLERVV 451 (554)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHH-----HHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 5555554444334333333222 2233333333333332 123444566777788888888888888888888
Q ss_pred HhhhhhhhhHHHHH
Q 004160 531 NELDGTKLKVSEAE 544 (771)
Q Consensus 531 ~ELNe~nIe~sQqE 544 (771)
..++.+|+.+-+++
T Consensus 452 ~~~~~ln~~lerLq 465 (554)
T KOG4677|consen 452 EILHKLNAPLERLQ 465 (554)
T ss_pred HHHhhhhhhHHHHH
Confidence 88888887765553
No 162
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.49 E-value=14 Score=39.04 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLV 513 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLe 513 (771)
.+...+...+..+..++..+.....+++..+.+.+.++.++..++..+.....++.+ .+...++.++.|+.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p---~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP---LMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 333334444444444444444455555555555555555555555555555555544 44445555555444
No 163
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.34 E-value=18 Score=40.84 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhhc
Q 004160 545 TVVEQIVDLTHKLVISN 561 (771)
Q Consensus 545 tl~eRIeeLt~eLe~s~ 561 (771)
.+++-|.+++.++..+.
T Consensus 332 ~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444555555555444
No 164
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.33 E-value=25 Score=35.17 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 423 QAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK 502 (771)
Q Consensus 423 elqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK 502 (771)
.+...|+....++..+...+...-..+......+..+......++.++......+..++.++.......+.+......+.
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444445555555555555555555555555555555555555544444444444
Q ss_pred HH
Q 004160 503 MI 504 (771)
Q Consensus 503 sl 504 (771)
..
T Consensus 133 ~~ 134 (177)
T PF13870_consen 133 QQ 134 (177)
T ss_pred Hh
Confidence 33
No 165
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.82 E-value=27 Score=34.92 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 388 VTEARNKELERDLSMEKELVEELQNELNKEK-YSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNL 466 (771)
Q Consensus 388 ~aqsE~kELErqLlqlekeIeeLr~qLqkek-qeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqL 466 (771)
..+-.+..+..++..++..+...+.-=+.+- -.++++..+...+...+.+.+.++..+...+...-..+...+.+...+
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~ 89 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333333333222222 234444444444445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 467 KSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508 (771)
Q Consensus 467 KsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL 508 (771)
..+...+...+......+...+..+..+..+...+......+
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555444444444444444444444444443
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.79 E-value=18 Score=38.55 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
.++.+..-|+++.+++..|..|......+++.+...|+.++.....+....+.....
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555544444445555544444444444444433333333
No 167
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.44 E-value=71 Score=39.21 Aligned_cols=405 Identities=17% Similarity=0.206 Sum_probs=196.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhHHhhhHHHhHHHH
Q 004160 241 KQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEA-SRRMEETNDTLEDFRRV 319 (771)
Q Consensus 241 ~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a-~k~~~~~~~~~~df~rv 319 (771)
.|.+-|+-||--+++ +..+.+-+.++++.-+.++.+ .-.-|.+.+|..++-.++ +|+..+..--=+++.+.
T Consensus 471 ~qs~iIkKLRAk~ke-------~etl~~K~ge~i~~L~sE~~~-lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~s 542 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKE-------AETLEEKKGELITKLQSEENK-LKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNS 542 (961)
T ss_pred HHHHHHHHHHHHhhh-------hhHHHHHhhhHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 355666666665544 344455555666665555543 234577888888877665 56666666667788999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHH----HHHHHHHHHHH
Q 004160 320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERV----KLRVTEARNKE 395 (771)
Q Consensus 320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~----~l~~aqsE~kE 395 (771)
+.+.++..+-+.+-|.+|-+.|+-..- +--|+ ..++..+-.- |.+-+.|-+.-...... +=..++.++..
T Consensus 543 r~~~~~le~~~~a~qat~d~a~~Dlqk-~nrlk--Qdear~~~~~---lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~ 616 (961)
T KOG4673|consen 543 RALAAALEAQALAEQATNDEARSDLQK-ENRLK--QDEARERESM---LVQQVEDLRQTLSKKEQQAARREDMFRGEIED 616 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHH-Hhhhh--hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999983311 11111 1122222111 22222222211111111 11234455555
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH--HHHHh-----HHH
Q 004160 396 LERDLSMEKELVEELQNE-----------LNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL--RVKES-----DLV 457 (771)
Q Consensus 396 LErqLlqlekeIeeLr~q-----------LqkekqeLEelqeEIesLQeELqelekELqElekeI--eelEn-----ELe 457 (771)
|++.+-..+..-..+-.+ |..++..+-.. -..+..+-+.+...+.+.+..+ +.... ++-
T Consensus 617 LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~---~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL 693 (961)
T KOG4673|consen 617 LQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKA---ATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELL 693 (961)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHH
Confidence 555555544444333222 12222111111 1111221122222222211111 11111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004160 458 EAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTK 537 (771)
Q Consensus 458 eLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~n 537 (771)
.+.-.+-.......-+..+-..+...+.....+....+.++..++..++.++|....+.....+..... +.++....
T Consensus 694 ~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~---~q~lq~~l 770 (961)
T KOG4673|consen 694 SLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH---KQELQEVL 770 (961)
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHH
Confidence 111111122233344445555667777777888888888888888888888888887777766554333 23333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc-------c------CcccCcCC----cch------------HH---hhHhhhhhhh
Q 004160 538 LKVSEAETVVEQIVDLTHKLVISN-------K------NDESSTSM----PTD------------DM---GLELMQQGLD 585 (771)
Q Consensus 538 Ie~sQqEtl~eRIeeLt~eLe~s~-------~------~~~~dI~q----lkd------------EI---eeeL~~qeLe 585 (771)
+.+....--..+-....-+++.+. . .-..+|.- |.+ .+ .--| -.+-
T Consensus 771 l~ve~~~k~~e~~~~~~~~lers~a~i~Ssp~~s~~~SgSnee~ag~~~~f~~dd~s~~~s~gqq~~~~~~~hl--~~~~ 848 (961)
T KOG4673|consen 771 LHVELIQKDLEREKASRLDLERSTARINSSPVSSQLPSGSNEEIAGQNSAFENDDFSEKRSMGQQEATMSPYHL--KSIT 848 (961)
T ss_pred HHHHHHHHHhhhCHHHHhhcccccCccCCCCchhhCCCCchHhHhcccchhhccchhhhhcCCCCCcccchhHH--hhhc
Confidence 333222000000001111111100 0 00011100 000 00 1111 1111
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHHHHHh
Q 004160 586 KGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQ 665 (771)
Q Consensus 586 kereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~~~~~ 665 (771)
.+...+++--+.+ .--.++|..+-.+|..+.....+.++||--.-.-.+..+...+.+..+-.--.|++-=|+.+-
T Consensus 849 ~nttt~eh~eall----~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~L 924 (961)
T KOG4673|consen 849 PNTTTSEHYEALL----RQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAAL 924 (961)
T ss_pred CCCchHHHHHHHH----HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1222232222222 225567788888888888888889998866555555555555555555555567777788887
Q ss_pred hhhccc
Q 004160 666 ERFGEK 671 (771)
Q Consensus 666 e~~~~~ 671 (771)
.-.||+
T Consensus 925 qmyGEk 930 (961)
T KOG4673|consen 925 QMYGEK 930 (961)
T ss_pred HHhcch
Confidence 777775
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.92 E-value=28 Score=33.93 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160 455 DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD 534 (771)
Q Consensus 455 ELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELN 534 (771)
.+..|+.++..++.++...+.....+..++......+..... ++......++..-.++...++.++..+..+++.|+
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke---e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE---ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333333333333333333333333333332222 33444444555556777777777777777777664
No 169
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.71 E-value=40 Score=35.51 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 383 RVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 383 ~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
.-++..++..+++.+..+.+--.+|..|+.++......+......+..++..+....-++...+..+....++..-+..+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 33455556666666666666666666666666666666666666666666665555555555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILE 478 (771)
Q Consensus 463 iEqLKsEIesLq~ELE 478 (771)
+..+..++..+...+.
T Consensus 89 l~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 89 LGQLEAELAELREELA 104 (202)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4444444444444443
No 170
>PRK10869 recombination and repair protein; Provisional
Probab=87.41 E-value=70 Score=37.97 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004160 509 EEQLVQAMDTLQEKDEHVLILQNELDGTKLKVS 541 (771)
Q Consensus 509 EgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~s 541 (771)
+..+.++...+......+...-..|+..|.+..
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444455554444443
No 171
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.31 E-value=1.1e+02 Score=40.07 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=40.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 333 SQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN 412 (771)
Q Consensus 333 s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~ 412 (771)
+-..+--++.+..++... ++.+..+-.....|..-+..+...++..-..+-.......++...-..++.....+..
T Consensus 738 ~~~~i~e~~~~l~~~~~e----l~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~ 813 (1294)
T KOG0962|consen 738 IDKEIPELEKELQEVYEE----LGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDS 813 (1294)
T ss_pred HhhhhhHHHHHHHHHHHH----HHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444444444333 3334444455566666555565555555555555666665555555555555555554
No 172
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.26 E-value=56 Score=36.73 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004160 591 FRLQTKQLEIELKFARENLRM 611 (771)
Q Consensus 591 Leeel~eLEqEleelReeLrE 611 (771)
++-+..-.+.-|..+-..+.+
T Consensus 347 L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 347 LQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 173
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=87.21 E-value=9.8 Score=34.38 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH
Q 004160 318 RVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE 380 (771)
Q Consensus 318 rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~ 380 (771)
||-.|||.||.|.-+--....+++.+-.+=+..+..|++|+..=|..|.. |+.++..+.
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~e----LE~~h~kmK 59 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYE----LEQAHRKMK 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 67889999999998888888889999999999999999999988888764 445554443
No 174
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.07 E-value=69 Score=37.57 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q 004160 272 EKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLL 351 (771)
Q Consensus 272 ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l 351 (771)
.-...+....-+++..|=.--.+|..--. |..+...-.....| +..+++-.+.++.+.+.+|..|+.+-----.--
T Consensus 176 ~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e---~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k 251 (511)
T PF09787_consen 176 GNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGE---LQEQLELLKAEGESEEAELQQYKQKAQRILQSK 251 (511)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence 33344444445666666444444444333 44444433333333 356788888889999999998883311111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 352 GKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSL 431 (771)
Q Consensus 352 ~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesL 431 (771)
++-++.|... ....++.+--+. .+|..++.+...++..+..++-+|..+..+++..+..+..-.......
T Consensus 252 EklI~~LK~~--~~~~~~~~~~~~--------~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~ 321 (511)
T PF09787_consen 252 EKLIESLKEG--CLEEGFDSSTNS--------IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQ 321 (511)
T ss_pred HHHHHHHHhc--ccccccccccch--------hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1222223220 111111110001 445555555555555555555555555555555555444332222222
Q ss_pred HHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 432 QEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ 511 (771)
Q Consensus 432 QeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq 511 (771)
..++...-......+..+.....++..+. +.+......+...+.+...++......+...- . .+.-..++..
T Consensus 322 ~~~~~~~~~~~~~~e~e~~l~~~el~~~~---ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~----~-~s~~~elE~r 393 (511)
T PF09787_consen 322 PQELSQQLEPELTTEAELRLYYQELYHYR---EELSRQKSPLQLKLKEKESEIQKLRNQLSARA----S-SSSWNELESR 393 (511)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHH---HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh----c-cCCcHhHHHH
Confidence 22222211111111222333333332222 22233333334444444444444444433321 0 0122356777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 004160 512 LVQAMDTLQEKDEHVLILQNELDGTKLKVSEAE 544 (771)
Q Consensus 512 LeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqE 544 (771)
+..++..+=++...+..+..+=+.+.+++.+.+
T Consensus 394 l~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 394 LTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred HhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 777777777777777777777777777776663
No 175
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.81 E-value=32 Score=33.49 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEId 481 (771)
+.......+.++..+...++.+.
T Consensus 106 ~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 106 LEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 176
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.52 E-value=59 Score=36.19 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHh----HHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES----DLVEAKLEIQN 465 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEn----ELeeLq~eiEq 465 (771)
-.-++....++..++.+-..|...+.+.++.-+.+..++.+....|...-.........-..++- ...++..-...
T Consensus 55 tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk 134 (305)
T PF14915_consen 55 TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK 134 (305)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555556666666666666666666666666677776666665544444433333222222 22222333455
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004160 466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS-------REEQLVQAMDTLQEKDEHVLILQNELDGTKL 538 (771)
Q Consensus 466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes-------LEgqLeEleeeLkEkEE~L~~~q~ELNe~nI 538 (771)
|...++++...-+-+..+|+.+.++...+..++-.+..-+.. .+..+.+..-.++++++.+...++.++.+-.
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 666677777777777888888888888887777666655444 4555555555555555555554444444322
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004160 539 KVSEAETVVEQIVDLTH 555 (771)
Q Consensus 539 e~sQqEtl~eRIeeLt~ 555 (771)
.++++.+|+.++..
T Consensus 215 ---Kqes~eERL~Qlqs 228 (305)
T PF14915_consen 215 ---KQESLEERLSQLQS 228 (305)
T ss_pred ---HHHHHHHHHHHHHH
Confidence 33777777777553
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.32 E-value=28 Score=38.25 Aligned_cols=107 Identities=19% Similarity=0.228 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 405 ELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFEL 484 (771)
Q Consensus 405 keIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeEL 484 (771)
.+|.+++.++++++++-.+.+=.+++|..-++. .......-..+...|+.+-..+-+..++++...+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqK-------QKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rq------ 84 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQK-------QKQKVEEEKNEYSALKRENQSLMESCENLEKTRQ------ 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH------
Confidence 456666666666666655554444444444433 2222333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 485 SNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNE 532 (771)
Q Consensus 485 eeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~E 532 (771)
.+..++..-..++..++|++.-....+..++..+....++
T Consensus 85 --------Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 85 --------KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred --------HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555555544444443333
No 178
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.96 E-value=80 Score=37.25 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 348 EHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE 427 (771)
Q Consensus 348 ~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeE 427 (771)
..-|+.|..+|.+|=..+|-.-+ -++-=+.+-|..+....-++....+++.+....-+.+.+++.+.+...++
T Consensus 273 i~~lk~~n~~l~e~i~ea~k~s~-------~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee 345 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMKISQ-------KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE 345 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34455566666655554443211 11122233344444444444444444444444445555555555555555
Q ss_pred HHHHHHHHhHHh
Q 004160 428 VSSLQEELGRKN 439 (771)
Q Consensus 428 IesLQeELqele 439 (771)
+..|+.....+.
T Consensus 346 i~~L~~~~d~L~ 357 (622)
T COG5185 346 IKALQSNIDELH 357 (622)
T ss_pred HHHHHhhHHHHH
Confidence 555555444443
No 179
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=85.57 E-value=52 Score=34.69 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 004160 548 EQIVDLTHKLV 558 (771)
Q Consensus 548 eRIeeLt~eLe 558 (771)
++++.+.....
T Consensus 165 RsVakLeke~D 175 (205)
T KOG1003|consen 165 RRVAKLEKERD 175 (205)
T ss_pred HHHHHHcccHH
Confidence 34444433333
No 180
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.54 E-value=1.2e+02 Score=38.82 Aligned_cols=177 Identities=15% Similarity=0.242 Sum_probs=76.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhH
Q 004160 503 MIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLE 578 (771)
Q Consensus 503 slIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eee 578 (771)
..+..+...+.+....+++...-+....+.+..+--.+... ..-..++.+++.+|.... ..+....... ...
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k----~~~e~~~~~~ek~~~e 816 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAK----QRAEESSKELEKRENE 816 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33334444444444555555444444444444333333333 222333334443333332 2222222222 333
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh-H
Q 004160 579 LMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND-L 657 (771)
Q Consensus 579 L~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d-~ 657 (771)
. +.|..+.+.++..+...++.+..+...+..++.++..++-.++.-..+.+.+...+ ...-..+-|-++ +
T Consensus 817 ~--e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el-------~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 817 Y--ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL-------KDQKAKQRDIDTEI 887 (1174)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH-------HHHHHHHHhhhHHH
Confidence 3 44444445555555555555555555555555555555544444333333333322 222111111111 2
Q ss_pred HHHHHHHhhhhcccccchhHHHHHhHHHhhHHHHH
Q 004160 658 RKLYALAQERFGEKSVGDLAIERLQLEAAQLEVEA 692 (771)
Q Consensus 658 ~~~~~~~~e~~~~~~~~~~~~~~l~~eaa~~e~~a 692 (771)
..+..--.--+-++++|.+.+++|.-+---.+-++
T Consensus 888 ~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~ 922 (1174)
T KOG0933|consen 888 SGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEK 922 (1174)
T ss_pred hhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhH
Confidence 12222111125578889888877766655554433
No 181
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.49 E-value=19 Score=39.80 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHH
Q 004160 378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLV 457 (771)
Q Consensus 378 e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELe 457 (771)
-+.++. -++.++..+.+++.++-+..=--+.|+|+...+-.....+...+..+++.+.++..++.+..+.++.....+.
T Consensus 72 S~dse~-s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d 150 (302)
T PF09738_consen 72 SVDSEA-SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHD 150 (302)
T ss_pred cccccc-cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6788899999999999998888888888888888887777777777777777766666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004160 458 EAKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 458 eLq~eiEqLKsEIesLq~EL 477 (771)
.++.+...++..+......|
T Consensus 151 ~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444444
No 182
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.28 E-value=1.1e+02 Score=37.99 Aligned_cols=83 Identities=28% Similarity=0.348 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 355 LVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 355 ~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
..||++-=-++---.-+|+-.|+|.+|=.-.++.+.++..-|..++-.+...-.+.+.++...=..|+.-.+....|+.|
T Consensus 99 yselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkE 178 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKE 178 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544444444557888899999888888888888888887777776666666666555444444444455556666
Q ss_pred HhH
Q 004160 435 LGR 437 (771)
Q Consensus 435 Lqe 437 (771)
|..
T Consensus 179 L~~ 181 (717)
T PF09730_consen 179 LDQ 181 (717)
T ss_pred HHH
Confidence 544
No 183
>PF13514 AAA_27: AAA domain
Probab=85.24 E-value=1.2e+02 Score=38.75 Aligned_cols=232 Identities=19% Similarity=0.275 Sum_probs=107.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------hHHHHhHHHHH--------------hhHHHH
Q 004160 174 RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKK--------SEEAAKIDSEL--------------KSKAQM 231 (771)
Q Consensus 174 ~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k--------~~e~~~~~~e~--------------~~k~~~ 231 (771)
.+|........+.++.+..++..+..-..++..+...+-.= .++++..|..= ..=+..
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a 531 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAA 531 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHH
Confidence 35666666666666666666666666666666554443221 22333333310 011222
Q ss_pred hHHHhHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 004160 232 LNEANEVVKKQ------ETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRR 305 (771)
Q Consensus 232 l~~an~~~~~q------e~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~ 305 (771)
+..|..+..+. -+++..++..+..-...+.. -...+..+++.+..-.-.|-..=.- +-
T Consensus 532 ~~~aD~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~~~~--------~g- 595 (1111)
T PF13514_consen 532 VREADELADRRLREAERAARLAQLRARLEEARARLAR-------AQARLAAAEAALAALEAAWAALWAA--------AG- 595 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh--------cC-
Confidence 34444444332 23444444444444433333 2345555666666666666432211 11
Q ss_pred hHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHH
Q 004160 306 MEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVK 385 (771)
Q Consensus 306 ~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~ 385 (771)
....-..|-+|.+-+.=+-.-..++......+...+.........|...+..+.. ..+|...-...+.-...
T Consensus 596 ~p~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~l~~~l~~a~~~~~~ 667 (1111)
T PF13514_consen 596 LPLSPAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP--------AEELAALLEEAEALLEE 667 (1111)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------cccHHHHHHHHHHHHHH
Confidence 1122255555543333222223444444455555444444444444444433333 23344333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS 429 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe 429 (771)
..........++..+......+...+..+......+........
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 668 WEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555554433
No 184
>PF13166 AAA_13: AAA domain
Probab=85.13 E-value=93 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=12.6
Q ss_pred CCCCCC--CCCCCCchHHHHHHHHHH
Q 004160 51 GKKSSV--NGYGLGEPARILLERLFA 74 (771)
Q Consensus 51 ~~~~~~--~~~g~~e~ar~llerlf~ 74 (771)
.++-++ |.||++=+. |-|+|.
T Consensus 15 ~~~~n~IYG~NGsGKSt---lsr~l~ 37 (712)
T PF13166_consen 15 FKKINLIYGRNGSGKST---LSRILK 37 (712)
T ss_pred CCceEEEECCCCCCHHH---HHHHHH
Confidence 335555 788877663 455665
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.02 E-value=70 Score=35.71 Aligned_cols=223 Identities=21% Similarity=0.258 Sum_probs=113.5
Q ss_pred HHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhh---hHHHHHHHhHHHHHHHHHHHHHHHHHH----------HH-HHH
Q 004160 301 EASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQ---KSLASSRKQMEEQEHLLGKQLVELEEQ----------KK-SLT 366 (771)
Q Consensus 301 ~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~---~~~~~sr~~~e~q~~~l~~q~~el~~q----------~~-~~~ 366 (771)
..+.+......|-.|-.-|-.||...-.-|.-+- ++|-..-..+.++-..|..++..-.++ |. ++-
T Consensus 49 Lc~~rv~qmtkty~Didavt~lLeEkerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~ 128 (306)
T PF04849_consen 49 LCSDRVSQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQ 128 (306)
T ss_pred hcccchhhhhcchhhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666688899999999887666555432 344444444444444444433222221 22 222
Q ss_pred HHHhhhHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 367 SYMTSLKDAQVEVES--------------ERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ 432 (771)
Q Consensus 367 s~~~~l~~a~~e~~~--------------~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ 432 (771)
-|..+=.+.--+-.+ ....+..++..++.|+..-..+..+...|...-...+..=..+..+ +-
T Consensus 129 ~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d---cv 205 (306)
T PF04849_consen 129 IYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD---CV 205 (306)
T ss_pred hcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH---HH
Confidence 233222111111000 1123444555555555555555555555554444333333333222 45
Q ss_pred HHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 433 EELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQL 512 (771)
Q Consensus 433 eELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqL 512 (771)
.++...+..+..+...+.....+...-+..|..+..++..++.....+-.+-......+...+.-...|...+..+++..
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY 285 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKY 285 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666665555555555544444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 004160 513 VQAMDTLQEKDEHV 526 (771)
Q Consensus 513 eEleeeLkEkEE~L 526 (771)
.+.-.+|.+..+.+
T Consensus 286 ~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 286 AECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 186
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.00 E-value=55 Score=34.51 Aligned_cols=89 Identities=22% Similarity=0.240 Sum_probs=44.9
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 004160 370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449 (771)
Q Consensus 370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeI 449 (771)
+-|++||.||-.+.- ++..|.-++-.....+...+..+..+...+....-++..++.+++...++..-+...+
T Consensus 17 qQLke~q~E~~~K~~-------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl 89 (202)
T PF06818_consen 17 QQLKESQAEVNQKDS-------EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKL 89 (202)
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhh
Confidence 457888877755443 3334444444444444444444555555554444555555555555444444444444
Q ss_pred HHHHhHHHHHHHHHHH
Q 004160 450 RVKESDLVEAKLEIQN 465 (771)
Q Consensus 450 eelEnELeeLq~eiEq 465 (771)
..++.++..+......
T Consensus 90 ~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 90 GQLEAELAELREELAC 105 (202)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 4444444444444333
No 187
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.13 E-value=35 Score=37.56 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=75.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH 525 (771)
Q Consensus 446 ekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~ 525 (771)
-..|+.++..+..|+.+..+-+=.+++++..++.-..+..........+.-|...|-..-++++..-..+...+.-++.+
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence 34566667777777776666666666666666666666666666666666666666666666666667777777777777
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhc
Q 004160 526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 526 L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~ 561 (771)
+.-+...|+..+- +.+.+...|..++.+|+.+.
T Consensus 97 v~~lEgQl~s~Kk---qie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 97 VNFLEGQLNSCKK---QIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 7766666665544 44667777888888887755
No 188
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=1.2e+02 Score=37.47 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=84.8
Q ss_pred CCCCCCchHHHHHHHHHHhhhhhhhhccCCCCCCcccccCchHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhH
Q 004160 57 NGYGLGEPARILLERLFAQTQKLEERMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNR 136 (771)
Q Consensus 57 ~~~g~~e~ar~llerlf~~t~~l~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~ 136 (771)
..||.+|..++++.-|.-+- .++.-+=.++.+++..+=.+=..|.+.=.+++. +.+.
T Consensus 38 ~~~~~~e~l~~~~~~L~~e~--------------------e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~---~~~e 94 (698)
T KOG0978|consen 38 RLNRVEEALTVLFDELAEEN--------------------EKLQNLADHLQEKHATLSEQISELLDKISTAET---EVDE 94 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHH
Confidence 45556666666666555532 233444445555555555554455544333333 3333
Q ss_pred hHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHH-------hhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHH
Q 004160 137 AKEELLRREREIDVACSRHEKLEEELGQSNLKLVS-------QARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRS 209 (771)
Q Consensus 137 ~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~-------q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~ 209 (771)
-+..++----++..-+.+..++..-+..+-..+.+ ++..|--..-.+++--..|.-.+..=+..-.++++++.
T Consensus 95 ~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~ 174 (698)
T KOG0978|consen 95 LEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQL 174 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 33333333444555555666666666555544444 45554444444444444455544444555566666666
Q ss_pred HHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHH
Q 004160 210 ELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLR 250 (771)
Q Consensus 210 ~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~ 250 (771)
...+....+..+++++ ..++.-+...-.+++.++
T Consensus 175 ~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~e~~~~~ 208 (698)
T KOG0978|consen 175 YSDEILRQLDRFRVEL-------RSLKEKVRSETFELRCLQ 208 (698)
T ss_pred HHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHH
Confidence 6666666666666555 445555555555555444
No 189
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=83.85 E-value=69 Score=34.74 Aligned_cols=84 Identities=10% Similarity=0.081 Sum_probs=65.5
Q ss_pred HHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHH
Q 004160 364 SLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFG 443 (771)
Q Consensus 364 ~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELq 443 (771)
+|.+|...|.+---=.....+++|.--..+.+...+++.+-.++........++.++|+.+......|..-+..+++.+.
T Consensus 79 liNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 79 LINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47778777777655566677889999999999999999999999999999999999988887776666666666655555
Q ss_pred HHHH
Q 004160 444 ETEN 447 (771)
Q Consensus 444 Elek 447 (771)
....
T Consensus 159 ~~~g 162 (254)
T KOG2196|consen 159 LQSG 162 (254)
T ss_pred cccc
Confidence 5433
No 190
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.62 E-value=1.2e+02 Score=37.16 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNAR 488 (771)
Q Consensus 451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiq 488 (771)
.++...-+|-.++.+++-++..++.+..+...++....
T Consensus 171 sLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se 208 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSE 208 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHH
Confidence 33334444444444444444444444444443333333
No 191
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=83.56 E-value=1e+02 Score=37.80 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 387 RVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE 427 (771)
Q Consensus 387 ~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeE 427 (771)
+.+-++...+...+..+..++...++.+.+....+...+.+
T Consensus 171 ~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~ 211 (670)
T KOG0239|consen 171 DLALKESLKLESDLGDLVTELEHVTNSISELESVLKSAQEE 211 (670)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33444444444444444444444444444444444443333
No 192
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.33 E-value=69 Score=34.29 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.8
Q ss_pred HHHHHHHHhH
Q 004160 428 VSSLQEELGR 437 (771)
Q Consensus 428 IesLQeELqe 437 (771)
+..|..++..
T Consensus 35 a~~Leek~k~ 44 (246)
T PF00769_consen 35 AEELEEKLKQ 44 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 193
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.00 E-value=87 Score=37.24 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 444 ETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 444 ElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
.+.+.+...+.....++..++....+....+.++-.+-.+|..++.++..+.-+.+++...+..+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444555555555555555555444444433
No 194
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=82.74 E-value=2.4 Score=47.03 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=15.0
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
+...+.+|..+...+..++..+..+...+..+...+....+.|..++..+..+...+...+..+...--.+..|+.++..
T Consensus 72 l~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 72 LADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444444444444444444444444444444444
Q ss_pred H
Q 004160 508 R 508 (771)
Q Consensus 508 L 508 (771)
+
T Consensus 152 L 152 (326)
T PF04582_consen 152 L 152 (326)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.66 E-value=45 Score=35.22 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160 445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSN 486 (771)
Q Consensus 445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELee 486 (771)
++..++....+...+..++..+..+++.++.....+...+..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~ 81 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVAS 81 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333
No 196
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.14 E-value=1.4e+02 Score=36.99 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 496 NEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 496 ~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
+|+..|+.++...+..-..+...+++...++...+..++...-+++++
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L 312 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRL 312 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666677777777777777666666665555555
No 197
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=81.64 E-value=71 Score=33.25 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160 360 EQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN 439 (771)
Q Consensus 360 ~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqele 439 (771)
.-...|.-|...+.+|+.-|+.+...|...+.-...-..-.-+....+..|..-+...+..+.+...-...-+.++.+..
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKT 143 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777777888888888888888887777777777777777777777777666666666666655555555555544
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQ 464 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiE 464 (771)
.-+.....++..+...+...+.+.+
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444333
No 198
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.47 E-value=26 Score=42.13 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=10.5
Q ss_pred HHHHHHhhhhhHHHHHHHhHH
Q 004160 325 DVRSELVSSQKSLASSRKQME 345 (771)
Q Consensus 325 ~vr~el~~s~~~~~~sr~~~e 345 (771)
..|.=|-++=+|+.+++.+.+
T Consensus 342 H~RDALAAA~kAY~~yk~kl~ 362 (652)
T COG2433 342 HERDALAAAYKAYLAYKPKLE 362 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444
No 199
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.39 E-value=30 Score=37.15 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE 524 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE 524 (771)
.+++..+-+.+-.+++++..+++..+.++..+.-+...|..+...+.|....+...+.+++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 33333333333333333333333333444444444444444444444444444444444443
No 200
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=81.38 E-value=1.3e+02 Score=36.08 Aligned_cols=132 Identities=23% Similarity=0.305 Sum_probs=73.7
Q ss_pred HHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHH
Q 004160 112 ALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIA 191 (771)
Q Consensus 112 ~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~ 191 (771)
.+=.=|++|-+||. +-|.-+.++|+..++.-|.-|..+-.-.+.+.+.+...-..=---...|...+-+-++-.+.+.
T Consensus 79 ~fadvEE~lfeAE~--~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl 156 (570)
T COG4477 79 SFADVEEHLFEAEA--LADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVL 156 (570)
T ss_pred hcccHHHHHHHHHH--hhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34456889999996 5688999999999998888888777666666655543211111112222222333333333444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhH-----HHhHHHHHhHHHHHHHHHHHHH
Q 004160 192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLN-----EANEVVKKQETEIQSLRKVIQE 255 (771)
Q Consensus 192 ~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~-----~an~~~~~qe~~~~~l~~~~~~ 255 (771)
+-...++.--.+++| ....+.++|..=+-+=+ +|-+|+..++-.+..|++-+++
T Consensus 157 ~n~~~~Ge~~~~lEk----------~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~ 215 (570)
T COG4477 157 ANRHQYGEAAPELEK----------KLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER 215 (570)
T ss_pred HhhhhhhhhhHHHHH----------HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333332 23334444444333322 5667777777777777766654
No 201
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=81.23 E-value=31 Score=41.48 Aligned_cols=32 Identities=34% Similarity=0.452 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEEL 435 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeEL 435 (771)
.+.+..++.++..++..++++...+..|..++
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 202
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.19 E-value=1.3e+02 Score=35.92 Aligned_cols=95 Identities=24% Similarity=0.254 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTL 519 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeL 519 (771)
..+.++...+.....+.......-+.+..++...+..++.+.++|......+..++. +|.....++|+++.-+++-+
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqD---EL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQD---ELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555555544 33444455666666666666
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 004160 520 QEKDEHVLILQNELDGTK 537 (771)
Q Consensus 520 kEkEE~L~~~q~ELNe~n 537 (771)
--+.++|..-.++++.++
T Consensus 497 asmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 665555555555555554
No 203
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=80.37 E-value=87 Score=33.51 Aligned_cols=7 Identities=0% Similarity=0.292 Sum_probs=1.4
Q ss_pred hccchhH
Q 004160 585 DKGNDNF 591 (771)
Q Consensus 585 ekereeL 591 (771)
+..|-.+
T Consensus 174 EeeR~t~ 180 (246)
T PF00769_consen 174 EEERVTY 180 (246)
T ss_dssp GGC---H
T ss_pred HHHHHHH
Confidence 3333333
No 204
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.91 E-value=42 Score=37.17 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=56.6
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
+..++.++.+++..|....-.-..+.|+...+.-.+.-|+..+..++..+-.++ +...++..++.-+|...+.
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~-------re~~eK~~elEr~K~~~d~ 151 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQ-------REYREKIRELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777777776666666666555554444444 4444555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 508 REEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 508 LEgqLeEleeeLkEkEE~L 526 (771)
+...+..+...+.+.++-|
T Consensus 152 L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 152 LREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655444
No 205
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=79.84 E-value=1.1e+02 Score=34.41 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 307 EETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVEL 358 (771)
Q Consensus 307 ~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el 358 (771)
-.+.=+..|=.+...+++.|-...+..... ........-..-|..|+.++
T Consensus 134 i~is~~~~dp~~A~~i~n~~~~~y~~~~~~--~~~~~~~~~~~fl~~ql~~~ 183 (444)
T TIGR03017 134 ISIEFSGVDPRFAATVANAFAQAYIDTNIE--LKVEPAQKAALWFVQQIAAL 183 (444)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 344445567788888888888776654432 22222333344445444444
No 206
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.80 E-value=1.4e+02 Score=36.57 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 004160 545 TVVEQIVDLTHKL 557 (771)
Q Consensus 545 tl~eRIeeLt~eL 557 (771)
.+..+|.+++..+
T Consensus 304 kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 304 KLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHhhcCc
Confidence 4555555555544
No 207
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.73 E-value=1.1e+02 Score=34.13 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHH
Q 004160 275 KVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRS 328 (771)
Q Consensus 275 ~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~ 328 (771)
..++.+|.+--..+-.|++.|+.|- ..|+.+++.-..==..|+..+.+|--
T Consensus 78 ~~a~~~L~~a~P~L~~A~~al~~l~---k~di~Eiks~~~PP~~V~~V~~aV~i 128 (344)
T PF12777_consen 78 EEAEEELAEAEPALEEAQEALKSLD---KSDISEIKSYANPPEAVKLVMEAVCI 128 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS----HHHHHHHHHSSS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhhCCCcHHHHHHHHHHhh
Confidence 5678888888888999999988875 35566655444333467778887754
No 208
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.60 E-value=65 Score=30.98 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004160 404 KELVEELQNELNKEKYS 420 (771)
Q Consensus 404 ekeIeeLr~qLqkekqe 420 (771)
.+.+..++..+...+.+
T Consensus 15 ~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTS 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333333333333333
No 209
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.22 E-value=2.1e+02 Score=36.77 Aligned_cols=63 Identities=30% Similarity=0.294 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 004160 379 VESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTE 441 (771)
Q Consensus 379 ~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekE 441 (771)
|+.-..++..+++++..+...+.....--..+...+++.+..|.+...++..++.++.+....
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443444444444445555555555555555555554444433
No 210
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.06 E-value=19 Score=33.20 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAK 620 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelr 620 (771)
..|......+...+..++..+..+...+.++...|+.++
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555555555555543
No 211
>PRK10869 recombination and repair protein; Provisional
Probab=76.91 E-value=1.7e+02 Score=34.87 Aligned_cols=32 Identities=3% Similarity=0.030 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 591 FRLQTKQLEIELKFARENLRMKEMEVLAAKRA 622 (771)
Q Consensus 591 Leeel~eLEqEleelReeLrEkE~eLrelrRa 622 (771)
....+..++.++...+..+..+=..|...|+.
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666665555555555554
No 212
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.53 E-value=1.2e+02 Score=37.58 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
++.++.+.+.-+.....++..+-....+....+.+......-+.+.+.+
T Consensus 37 ~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre 85 (916)
T KOG0249|consen 37 LPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRE 85 (916)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCC
Confidence 3344444444444445555555555555555544444444433333333
No 213
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.36 E-value=63 Score=34.81 Aligned_cols=77 Identities=25% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 456 LVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 456 LeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
+-.++...+.++.+++.++.+.+++ ..++..+..+++.++..+..++.....++++|+.....+..+...+++
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL-------~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEEL-------LKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3344444555555555544444444 445555566666677777777777778888877777666665555555
Q ss_pred hhhh
Q 004160 536 TKLK 539 (771)
Q Consensus 536 ~nIe 539 (771)
+--+
T Consensus 203 Le~~ 206 (290)
T COG4026 203 LEPG 206 (290)
T ss_pred hccc
Confidence 4433
No 214
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=76.31 E-value=2.4e+02 Score=36.35 Aligned_cols=138 Identities=19% Similarity=0.276 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHhh--HHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 201 ELELEKMRSELLKKSEEAAKIDSELKS--KAQMLNEANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVE 278 (771)
Q Consensus 201 ~~e~~~~k~~~~~k~~e~~~~~~e~~~--k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e 278 (771)
-.|+++||+++.+-.+----..+|=++ .+......++-+++++-+|..+++.|+.-.+.+---......-.+++...+
T Consensus 410 ~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k 489 (1041)
T KOG0243|consen 410 YEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLK 489 (1041)
T ss_pred HHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 468999999998766655555566555 555788999999999999999999999999888755566666667777888
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHH------HHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Q 004160 279 ANLEKRTMEWLLSQDALKKLAEE------ASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQM 344 (771)
Q Consensus 279 ~~le~~~~~wl~~q~elk~l~~~------a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~ 344 (771)
.+|...+-+...-+.|+.++..- .-..+..+-.++.|+ ....|..+-.|++.+++-=.++
T Consensus 490 ~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~------a~~l~~~~~~s~~d~s~l~~kl 555 (1041)
T KOG0243|consen 490 SKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR------ATKLRRSLEESQDDLSSLFEKL 555 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888888888776544 233333333444443 6777888888888887544333
No 215
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=76.29 E-value=1.6e+02 Score=36.44 Aligned_cols=150 Identities=20% Similarity=0.275 Sum_probs=81.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 342 KQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSL 421 (771)
Q Consensus 342 ~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeL 421 (771)
.|+++.-..|+.+++-++.+=---+- -..|..+-.+...--..+..++...-+..+.+-++...+..+-.++.+..+++
T Consensus 108 rq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqre 186 (916)
T KOG0249|consen 108 RQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQRE 186 (916)
T ss_pred chhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777655544222222 33444444444555556777777777777777777777777777777777776
Q ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 422 QQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL 501 (771)
Q Consensus 422 EelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL 501 (771)
+....--..+-. .....++..-.+.-....+.+.|.+++..+.+.+......-......++.++.+++.|
T Consensus 187 emneeh~~rlsd----------tvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 187 KMNEEHNKRLSD----------TVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred Hhhhhhcccccc----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 665543222222 2223333344444444444555555555555555544444444444444444444444
Q ss_pred H
Q 004160 502 K 502 (771)
Q Consensus 502 K 502 (771)
.
T Consensus 257 ~ 257 (916)
T KOG0249|consen 257 R 257 (916)
T ss_pred H
Confidence 3
No 216
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.49 E-value=1.9e+02 Score=34.83 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=25.3
Q ss_pred hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRA 622 (771)
Q Consensus 576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRa 622 (771)
+..+ .+|.+.+.++ ......+..++..+.+++..|..++-.
T Consensus 517 eel~--~alektkQel----~~tkarl~stqqslaEke~HL~nLr~e 557 (654)
T KOG4809|consen 517 EELM--NALEKTKQEL----DATKARLASTQQSLAEKEAHLANLRIE 557 (654)
T ss_pred HHHH--HHHHHHhhCh----hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6666666555 334455566677777777777666543
No 217
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.56 E-value=1.1e+02 Score=31.52 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 004160 316 FRRVKKLLSD 325 (771)
Q Consensus 316 f~rv~~ll~~ 325 (771)
|.||+.++..
T Consensus 3 f~Rl~~~~~a 12 (221)
T PF04012_consen 3 FKRLKTLVKA 12 (221)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 218
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.43 E-value=84 Score=34.44 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE 542 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ 542 (771)
+..+.+++..++..+..+...-..+..+++.++.|+.-.+.++..++..==.+..+|+.++..| +.-|..+-.+|++
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL---~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL---QKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 3333444444444444444444444444444445555555555555554445555566666555 4455556667777
Q ss_pred HHHHHHHHHH
Q 004160 543 AETVVEQIVD 552 (771)
Q Consensus 543 qEtl~eRIee 552 (771)
..-+..++.+
T Consensus 248 l~yLe~qle~ 257 (267)
T PF10234_consen 248 LDYLEHQLEE 257 (267)
T ss_pred HHHHHHHHHH
Confidence 6544444433
No 219
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.70 E-value=2.1e+02 Score=34.49 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 391 ARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELG 436 (771)
Q Consensus 391 sE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELq 436 (771)
.++-...+.+|-+...+.+.+-.|..-++.|......|..|-+.|+
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq 281 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQ 281 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3445556666667677777777777777776666666666665543
No 220
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.54 E-value=1.1e+02 Score=37.48 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 396 LERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 396 LErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
++.+.....+-+.=++.++...+++|......+...+.+
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555544444444
No 221
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=73.08 E-value=1.5e+02 Score=32.73 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 441 EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 441 ELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
+.....+.+...+.++..+..++.+.+.++..+...+.++..+|..+.-+-..+...+..+++.+....
T Consensus 194 eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 194 EKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444444444444444444444444444444444444444444444454555555554443
No 222
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.31 E-value=60 Score=31.84 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM 516 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEle 516 (771)
|..++..+-.+++......+.++.+...++..++.+...+..+...+..|++.+..++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555666666666666666666666666666666666666666666665544
No 223
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=72.01 E-value=1e+02 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHhhhHHHhHHHHHHHHHHHHHH
Q 004160 365 LTSYMTSLKDAQVEVESERVKLRVTE 390 (771)
Q Consensus 365 ~~s~~~~l~~a~~e~~~~~~~l~~aq 390 (771)
+.+-..+|+.|+++|.==|++|..+.
T Consensus 154 ~~~~l~DLesa~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 154 MIATLKDLESAKVKVDWLRSKLEEIL 179 (269)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 34555667777777766666555543
No 224
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.85 E-value=98 Score=29.81 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 004160 411 QNELNKEKYSLQQAI 425 (771)
Q Consensus 411 r~qLqkekqeLEelq 425 (771)
++.+..+..+++...
T Consensus 15 ~n~La~Le~slE~~K 29 (107)
T PF09304_consen 15 QNRLASLERSLEDEK 29 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 225
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=71.14 E-value=8.6 Score=43.25 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=6.3
Q ss_pred HHHHHHhhhhhhhhHHHH
Q 004160 526 VLILQNELDGTKLKVSEA 543 (771)
Q Consensus 526 L~~~q~ELNe~nIe~sQq 543 (771)
++.+.+..--.|+.+...
T Consensus 181 l~DlEnrsRRnNiRIiGi 198 (370)
T PF02994_consen 181 LDDLENRSRRNNIRIIGI 198 (370)
T ss_dssp HHHHHHHHTTTEEEEES-
T ss_pred HHHHHhhccCCceeEEec
Confidence 333333333334443333
No 226
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=70.99 E-value=13 Score=41.74 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 497 EVRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 497 ELkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
.+..++..+..+++.+.+++..+..+...+
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i 174 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRI 174 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444444444444333
No 227
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.96 E-value=1.9e+02 Score=35.37 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 388 VTEARNKELERDLSMEKELVEELQN 412 (771)
Q Consensus 388 ~aqsE~kELErqLlqlekeIeeLr~ 412 (771)
-+.+++..++.++...+..+..++.
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 228
>PRK12704 phosphodiesterase; Provisional
Probab=70.63 E-value=2.3e+02 Score=33.65 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=8.3
Q ss_pred chHHHHHHHhhhhh
Q 004160 626 KDEELKTVLGRLDA 639 (771)
Q Consensus 626 kd~elk~~~~~~~~ 639 (771)
-..++-..|+++..
T Consensus 315 ~~~~i~~ll~~l~~ 328 (520)
T PRK12704 315 LHPELIKLLGRLKY 328 (520)
T ss_pred hHHHHHHHHHHhhc
Confidence 34556666676654
No 229
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.40 E-value=80 Score=30.13 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQA 471 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIe 471 (771)
-.+.+.++.+..-+++..-.-+.....|..+|...+..++.++.++..+...-..|..+++.++.++.
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666677777778777777777777777777766666666666666655
No 230
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.55 E-value=2.3e+02 Score=33.24 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 368 YMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ 432 (771)
Q Consensus 368 ~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ 432 (771)
|..-=+.|-++++..-..++++..++-+|..-+..+.-.+..+.+..++....|+-+...+.-.+
T Consensus 288 l~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq 352 (502)
T KOG0982|consen 288 LIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ 352 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 33334566677777777777777777777777777766666666666666666655555443333
No 231
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.50 E-value=2.4e+02 Score=33.40 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHH
Q 004160 439 NTEFGETENLLRVK 452 (771)
Q Consensus 439 ekELqElekeIeel 452 (771)
..+|..+...|=..
T Consensus 112 ~~~F~~LA~~ile~ 125 (475)
T PRK10361 112 SEQFENLANRIFEH 125 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 232
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.50 E-value=62 Score=34.45 Aligned_cols=7 Identities=0% Similarity=0.060 Sum_probs=2.5
Q ss_pred HhHHHHH
Q 004160 453 ESDLVEA 459 (771)
Q Consensus 453 EnELeeL 459 (771)
..++..|
T Consensus 192 ~~EydrL 198 (216)
T KOG1962|consen 192 QDEYDRL 198 (216)
T ss_pred ccHHHHH
Confidence 3333333
No 233
>PRK10698 phage shock protein PspA; Provisional
Probab=68.93 E-value=1.6e+02 Score=31.10 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 360 EQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQN 412 (771)
Q Consensus 360 ~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~ 412 (771)
|--+.|--|.+.++++-.++ +.-+-.+-...+.+++++..+...+.....
T Consensus 24 DP~k~l~q~i~em~~~l~~~---r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEV---RSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555554444 223334444455555555555555555443
No 234
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.90 E-value=1.4e+02 Score=30.40 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE 483 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE 483 (771)
.++...++.++...+..+.....+++.|...-......+.+..+...... ...+...-..-..++..+.-++++
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ys------E~dik~AYe~A~~lQ~~L~~~re~ 99 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYS------EEDIKEAYEEAHELQVRLAMLRER 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554444444444444332221 222333344444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 484 LSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
-..++.+.+.+...+..++..++--+.-+.++.-.+..+...+..+...+..
T Consensus 100 E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 100 EKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555544443
No 235
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.89 E-value=2.9e+02 Score=34.06 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHH
Q 004160 605 ARENLRMKEMEVLAAKRALTVKDEELKTV 633 (771)
Q Consensus 605 lReeLrEkE~eLrelrRaL~~kd~elk~~ 633 (771)
-...++.+-..+..+=.-+++=|+|-..+
T Consensus 245 r~~kl~~l~~~~~~LWn~l~ts~Ee~~~f 273 (660)
T KOG4302|consen 245 RLQKLQDLRTKLLELWNLLDTSDEERQRF 273 (660)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 33334555555555555566666666555
No 236
>PRK11519 tyrosine kinase; Provisional
Probab=68.65 E-value=2.6e+02 Score=34.21 Aligned_cols=11 Identities=45% Similarity=0.534 Sum_probs=6.5
Q ss_pred hccccccccCC
Q 004160 709 NKASLSIETDT 719 (771)
Q Consensus 709 ~~~~~~~~~d~ 719 (771)
.+--+-|++|.
T Consensus 555 g~rvLlID~Dl 565 (719)
T PRK11519 555 NKRVLLIDCDM 565 (719)
T ss_pred CCcEEEEeCCC
Confidence 34446677775
No 237
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=68.57 E-value=3e+02 Score=34.12 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.4
Q ss_pred CCchHHHHHHHHHH
Q 004160 61 LGEPARILLERLFA 74 (771)
Q Consensus 61 ~~e~ar~llerlf~ 74 (771)
.++|--.|+-|||-
T Consensus 72 nse~ms~LySKL~~ 85 (786)
T PF05483_consen 72 NSEPMSRLYSKLYK 85 (786)
T ss_pred ccHHHHHHHHHHHH
Confidence 46777778888875
No 238
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=67.46 E-value=2e+02 Score=31.70 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 004160 479 EKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLV 558 (771)
Q Consensus 479 EIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe 558 (771)
+++.+|..+..+...+......+...+..+.+..+.-..++-. ++.++.+.+.+++..+-++..-.+.+++...-|+
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~---q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQ---QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4444555555555555555555555544443333332222222 2344456666666666666555555555554554
Q ss_pred hh
Q 004160 559 IS 560 (771)
Q Consensus 559 ~s 560 (771)
..
T Consensus 126 ra 127 (333)
T KOG1853|consen 126 RA 127 (333)
T ss_pred Hh
Confidence 43
No 239
>PRK00106 hypothetical protein; Provisional
Probab=67.10 E-value=2.8e+02 Score=33.27 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.4
Q ss_pred cccchHHHHHHHhhhhh
Q 004160 623 LTVKDEELKTVLGRLDA 639 (771)
Q Consensus 623 L~~kd~elk~~~~~~~~ 639 (771)
+...+.++-..||||-.
T Consensus 327 ~~~~~~e~~~~lg~l~~ 343 (535)
T PRK00106 327 APNLHPDLIKIMGRLQF 343 (535)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 44578888888998877
No 240
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=66.80 E-value=64 Score=28.44 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=23.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 448 LLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQ 511 (771)
Q Consensus 448 eIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgq 511 (771)
.+..+.+.+..+..+++........+..+.... ..++..+..+...|+..++.+...
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~-------~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSA-------ERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333 344444444444444444444443
No 241
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=66.76 E-value=69 Score=29.97 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=26.0
Q ss_pred hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAA 619 (771)
Q Consensus 576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrel 619 (771)
...+ ..|..+.+.++..+..++.....++..+.+++..|+++
T Consensus 66 ~e~~--~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 66 EEAI--QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 55566666666666666666666666666666666543
No 242
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=66.34 E-value=1.7e+02 Score=30.46 Aligned_cols=103 Identities=22% Similarity=0.213 Sum_probs=56.2
Q ss_pred HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160 435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ 514 (771)
Q Consensus 435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE 514 (771)
|...+..+.-+++.++--+..+.....+-..+-.....++.+...-...+...-.+|+-+..++--|......-+..+.+
T Consensus 66 L~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~ 145 (178)
T PF14073_consen 66 LSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKE 145 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444333333333333333332223334444456666667777777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 004160 515 AMDTLQEKDEHVLILQNELDGTK 537 (771)
Q Consensus 515 leeeLkEkEE~L~~~q~ELNe~n 537 (771)
++..|.+.+.+-.-+++.-.++.
T Consensus 146 LE~KL~eEehqRKlvQdkAaqLQ 168 (178)
T PF14073_consen 146 LEEKLQEEEHQRKLVQDKAAQLQ 168 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776666555443
No 243
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=66.10 E-value=2.1e+02 Score=31.31 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
+..+-.++..-+.-|.+.-.+|+.-...|++.-..|..|..++..+...-..++ +++.-+-++.++
T Consensus 80 iNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLd--------------q~L~~I~sqQ~E 145 (254)
T KOG2196|consen 80 INKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLD--------------QELEFILSQQQE 145 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHH--------------HHHHHHHHHHHH
Confidence 444556666656666666777777777777777777777766665555444444 445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHHHHHhhhc
Q 004160 508 REEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 508 LEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt~eLe~s~ 561 (771)
+|.++..+++.+...+-+.- =...+..|.+.... +++..++..+...|...+
T Consensus 146 LE~~L~~lE~k~~~~~g~~~--~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii 198 (254)
T KOG2196|consen 146 LEDLLDPLETKLELQSGHTY--LSRADVEREQTYKMAENIDSQLKRLSEDLKQII 198 (254)
T ss_pred HHHHHHHHHHHHhccccchh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 66666666666666544221 11222223322222 677777777777777766
No 244
>PRK11519 tyrosine kinase; Provisional
Probab=65.67 E-value=2.5e+02 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 405 ELVEELQNELNKEKYSLQQAIDEVSSLQE 433 (771)
Q Consensus 405 keIeeLr~qLqkekqeLEelqeEIesLQe 433 (771)
+-+.=++.++...+.+|+..+..+...+.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 245
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.64 E-value=1.9e+02 Score=30.83 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 392 RNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQE 433 (771)
Q Consensus 392 E~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQe 433 (771)
-+.+.+..+-++..-++..-......+..++........++.
T Consensus 32 ~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 32 AIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444444444433333
No 246
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.32 E-value=92 Score=29.88 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=24.7
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKR 621 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrR 621 (771)
..+.+..+.++..+..++.....++..+.+.+..|+++-.
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666666666665543
No 247
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=64.97 E-value=3e+02 Score=32.75 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=10.0
Q ss_pred cchHHHHHHHhhhhhh
Q 004160 625 VKDEELKTVLGRLDAK 640 (771)
Q Consensus 625 ~kd~elk~~~~~~~~~ 640 (771)
--..++-..|+++..+
T Consensus 308 ~~~~~~~~~l~~l~~r 323 (514)
T TIGR03319 308 GLHPELIKLLGRLKFR 323 (514)
T ss_pred cCCHHHHHHHHHhhcc
Confidence 3456667777776653
No 248
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=64.70 E-value=1.7e+02 Score=29.82 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 483 ELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 483 ELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
+-..++-++.-++.+-..|....+.++..+..+...+...+.-...+.-.++.+...+.+.
T Consensus 85 ~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v 145 (159)
T PF05384_consen 85 EAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQV 145 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444445555555555555555555555555555555555555555554444443
No 249
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=63.89 E-value=1.1e+02 Score=28.04 Aligned_cols=67 Identities=24% Similarity=0.187 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 415 NKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 415 qkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEId 481 (771)
..++...++..+-|.-|+-++.+++..-..+...++...+....|..+-++++.+...-+.++..+-
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555544444444444555444455555555555555555544444443
No 250
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.64 E-value=2.7e+02 Score=31.82 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 411 QNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQM 490 (771)
Q Consensus 411 r~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrr 490 (771)
+..+..-+.+.+++...-..|.+++-....-+.....+.+.++.-+-.+..+-..++-.++.+..+..+..++-..+++.
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444433333333333
Q ss_pred H
Q 004160 491 L 491 (771)
Q Consensus 491 L 491 (771)
+
T Consensus 171 L 171 (401)
T PF06785_consen 171 L 171 (401)
T ss_pred H
Confidence 3
No 251
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=63.56 E-value=1.1e+02 Score=27.27 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 004160 407 VEELQNELNKEKYS 420 (771)
Q Consensus 407 IeeLr~qLqkekqe 420 (771)
|...+.+|..+..+
T Consensus 7 l~EKDe~Ia~L~eE 20 (74)
T PF12329_consen 7 LAEKDEQIAQLMEE 20 (74)
T ss_pred HHhHHHHHHHHHHH
Confidence 33333333333333
No 252
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=62.71 E-value=3.6e+02 Score=32.98 Aligned_cols=189 Identities=24% Similarity=0.245 Sum_probs=99.2
Q ss_pred HhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 182 RLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKEEELE 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke~~~~ 261 (771)
.++.-+++.++.-..|...+++-+..+..+...+++--.---|.+ +..+|-++|.-..|+-.|-..- |..+=+
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k-----~k~~~~llK~yQ~EiD~LtkRs--k~aE~a 88 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDK-----LKMVNPLLKSYQSEIDNLTKRS--KFAEAA 88 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHH-----HHHHHHHHHHHHHHHHHHHHHH--HhhHHH
Confidence 345556777777777888888888888888888887766655554 4567777777777776664332 222222
Q ss_pred HHHHhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHH-----------HHHHHHHHHHH
Q 004160 262 ASVALRKVEEEKLKVVE--ANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFR-----------RVKKLLSDVRS 328 (771)
Q Consensus 262 ~~~~~~k~~~ekl~~~e--~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~-----------rv~~ll~~vr~ 328 (771)
..+...++ ..|= .-+=.-...|+--++. ++....+.+.++++|. +|+.|-.-+|.
T Consensus 89 fl~vye~L-----~eaPDP~pll~sa~~~l~k~~~-------~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k 156 (629)
T KOG0963|consen 89 FLDVYEKL-----IEAPDPVPLLASAAELLNKQQK-------ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRK 156 (629)
T ss_pred HHHHHHHH-----hhCCCCchHHHHHHHHhhhhhh-------hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH
Confidence 22222221 1110 0011112234433333 3333333344444432 34444444443
Q ss_pred HHhh----hhhH--HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHH
Q 004160 329 ELVS----SQKS--LASS--RKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVT 389 (771)
Q Consensus 329 el~~----s~~~--~~~s--r~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~a 389 (771)
..+- -..+ +... =+..-+++..|+.+.+.+.+|=..+.+-|.+|..|..-++.+...++..
T Consensus 157 ~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~ 225 (629)
T KOG0963|consen 157 LEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSK 225 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3211 1111 1111 1234455566666667777777777777777766666666666665554
No 253
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.45 E-value=3.3e+02 Score=32.39 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 537 KLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEV 616 (771)
Q Consensus 537 nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eL 616 (771)
.-.+++-++-++|+..++.+++..+ ...| ..|. .+..-.++++-.+.++++..+.+=
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat--------------~SAL--dlLk-------rEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKAT--------------TSAL--DLLK-------REKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH--------------HHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444788888999999998766 4556 3344 333444555555555555544443
No 254
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.96 E-value=3.3e+02 Score=32.33 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHHHHHHHHHH
Q 004160 495 NNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA-ETVVEQIVDLT 554 (771)
Q Consensus 495 r~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq-Etl~eRIeeLt 554 (771)
--|.+.++..+.++...+......|.+-...-..++-+|-.+++.+..+ +.-...|++-.
T Consensus 382 iLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 382 ILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 3455666777777777777777777777766667777777777666665 33334444333
No 255
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=61.88 E-value=77 Score=29.09 Aligned_cols=31 Identities=45% Similarity=0.522 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 491 LEELNNEVRELKMIMSSREEQLVQAMDTLQE 521 (771)
Q Consensus 491 LeeLr~ELkELKslIesLEgqLeEleeeLkE 521 (771)
..++..+...++..+..++..+.+++..+..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555444443
No 256
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=61.87 E-value=1.3e+02 Score=27.68 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=48.7
Q ss_pred HHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 433 EELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQL 512 (771)
Q Consensus 433 eELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqL 512 (771)
.|+..+..++......+..+ ..+...+++.+..+..++...+.++..+.+..+.+.++...|+.++.--.+-+
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k-------~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKK-------VKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELI 75 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444444444444444 44444445666666667777777778888888888888888877776655555
Q ss_pred HHHHH
Q 004160 513 VQAMD 517 (771)
Q Consensus 513 eElee 517 (771)
.++..
T Consensus 76 ~~L~~ 80 (96)
T PF08647_consen 76 EQLKE 80 (96)
T ss_pred HHHHH
Confidence 55444
No 257
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.68 E-value=2.1e+02 Score=29.49 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhhHHH
Q 004160 323 LSDVRSELVSSQKSLA 338 (771)
Q Consensus 323 l~~vr~el~~s~~~~~ 338 (771)
+.++...|...+.+++
T Consensus 32 ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 32 IRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 258
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=60.46 E-value=1.5e+02 Score=27.75 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 441 EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVR 499 (771)
Q Consensus 441 ELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELk 499 (771)
.+......+.........+..+...-.........+|..+..+|..+...+..+...+.
T Consensus 47 ~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 47 DVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444544455555554444444444444444444444444444444444433333
No 259
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.99 E-value=4.5e+02 Score=33.20 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhccCcccCcCCcchHH---hhHhh
Q 004160 508 REEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISNKNDESSTSMPTDDM---GLELM 580 (771)
Q Consensus 508 LEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~~~~~~dI~qlkdEI---eeeL~ 580 (771)
+...+.+++..-....+++.+.+.+|.++|-=+..+ .+-.+-+.++.+++..+. +..-.-..+. ..+=+
T Consensus 989 Lr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~G----V~AD~gAeeRA~~RRDEL 1064 (1480)
T COG3096 989 LRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIG----VRADSGAEERARIRRDEL 1064 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC----CCcCcchHHHHHHHHHHH
Confidence 344455555555555566666666666666555555 122223334445555433 2111111111 11111
Q ss_pred hhhhhc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--hhhhhhHHHHHhHHhhhhChh
Q 004160 581 QQGLDK---GNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVL--GRLDAKEKELKKLEETVEDAN 655 (771)
Q Consensus 581 ~qeLek---ereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~--~~~~~~~~el~~~~~~~~d~~ 655 (771)
+..|.. .+..+++++...|.+...+-..++..|.+....+...-.-.--.-+|| .|=+..|+-|++-|=+.-++.
T Consensus 1065 h~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~AK~~WC~VmRl~r~n~vErRL~rRElAYlsaD 1144 (1480)
T COG3096 1065 HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSAD 1144 (1480)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhhhhhhhcccHHHHHHHHHhhhcCHH
Confidence 222222 235555666666666666666666666666665544332222233333 345566777777766655665
Q ss_pred hH
Q 004160 656 DL 657 (771)
Q Consensus 656 d~ 657 (771)
.+
T Consensus 1145 EL 1146 (1480)
T COG3096 1145 EL 1146 (1480)
T ss_pred HH
Confidence 55
No 260
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=58.64 E-value=2.4e+02 Score=29.51 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=27.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 370 TSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYS 420 (771)
Q Consensus 370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqe 420 (771)
+.=++|+-=+.|+..-|..++.++.+.+.-+......+..-+.....-...
T Consensus 53 qaA~aAeAaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~a 103 (188)
T PF05335_consen 53 QAAKAAEAALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRA 103 (188)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666667766666666666655555554444444444444433333
No 261
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=3.9e+02 Score=31.75 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=19.3
Q ss_pred hccCCCCCCcccccCchHHHhHhhHHHHHHHHHhhhh
Q 004160 82 RMSRDSGVGKDVQFGLNLEILESDLQAVLAALKKKEE 118 (771)
Q Consensus 82 ~~~~~~~l~~~~~~~~~~~~l~s~~~~~l~~l~~ke~ 118 (771)
+.-.|.|++-|.+.--=|--=.-|+-.+|..|-.+.-
T Consensus 72 q~ckdlgyrgD~gyqtfLypn~~dlR~ll~fLie~lp 108 (521)
T KOG1937|consen 72 QYCKDLGYRGDTGYQTFLYPNINDLRSLLIFLIEKLP 108 (521)
T ss_pred HHHHHcCCCcccchhheecCCcccHHHHHHHHHhhCC
Confidence 3446888888873211111112355556667766655
No 262
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.75 E-value=1.1e+02 Score=27.52 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=46.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHH
Q 004160 526 VLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFA 605 (771)
Q Consensus 526 L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleel 605 (771)
|..++.+|.....+....+.-..++..-..+|..+. ++..++..- +.-|+..+...-...+...+..++.++..+
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~--~~~~~y~~v---G~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD--DDRKVYKSV---GKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--TT-EEEEEE---TTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHH---hHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444445555556666554 233343333 222322222322355556666666666666
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 004160 606 RENLRMKEMEVLAAKRALT 624 (771)
Q Consensus 606 ReeLrEkE~eLrelrRaL~ 624 (771)
...+..++..+..++..+.
T Consensus 82 ~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665554
No 263
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.84 E-value=3.5e+02 Score=32.42 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=56.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530 (771)
Q Consensus 451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q 530 (771)
-...++..|...++...++......+-+.+..+|.........+..++...+..+..+++.+.-....|+ .+|..|+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE---~QLs~MS 493 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE---EQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHH
Confidence 3455555566666666666666666666666666666666667777777777777777766665554443 3566666
Q ss_pred HhhhhhhhhHHHH
Q 004160 531 NELDGTKLKVSEA 543 (771)
Q Consensus 531 ~ELNe~nIe~sQq 543 (771)
+-+-.+|-+++.+
T Consensus 494 EHLasmNeqL~~Q 506 (518)
T PF10212_consen 494 EHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666555
No 264
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.57 E-value=2.9e+02 Score=30.88 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=53.8
Q ss_pred HHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004160 437 RKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAM 516 (771)
Q Consensus 437 elekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEle 516 (771)
+++--++-+..++...++.+.+-..+|..|++++..++..--+-.=.--+++=- +++....|.-|...++-+.
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLA-------LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLA-------LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444555555554444322211111122222 3344444444555555666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 004160 517 DTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLT 554 (771)
Q Consensus 517 eeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt 554 (771)
+.|-+++..| |.=|-.+|++-+-++++-.=++=..
T Consensus 138 ssL~ekDkGi---QKYFvDINiQN~KLEsLLqsMElAq 172 (305)
T PF15290_consen 138 SSLAEKDKGI---QKYFVDINIQNKKLESLLQSMELAQ 172 (305)
T ss_pred hhhchhhhhH---HHHHhhhhhhHhHHHHHHHHHHHHH
Confidence 6777777666 5567777888777776665444333
No 265
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=55.92 E-value=1.7e+02 Score=27.01 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGR 437 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqe 437 (771)
..+..++..+..+..++.+..+.+.........+..+...
T Consensus 24 ~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~ 63 (96)
T PF08647_consen 24 KELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKK 63 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333344444444444444444444444444444444333
No 266
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.77 E-value=1e+02 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 004160 514 QAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLT 554 (771)
Q Consensus 514 EleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt 554 (771)
++...++.+.+.+..++..++.++........+..-|..+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555555555544444444443
No 267
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=55.46 E-value=51 Score=29.54 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=20.2
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVL 617 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLr 617 (771)
..|......+...+..++..+..+...+...+..|.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666666666666666666555554
No 268
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.02 E-value=5.9e+02 Score=33.01 Aligned_cols=53 Identities=26% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh
Q 004160 598 LEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND 656 (771)
Q Consensus 598 LEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d 656 (771)
+.++|.--...|++++..+....+.+..--.++..|-..| +.+||+++.--|+
T Consensus 861 ~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w------~~~le~~V~~In~ 913 (1072)
T KOG0979|consen 861 AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVW------LPKLEEMVEQINE 913 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHH------HHHHHHHHHHHHH
Confidence 5666666667777777777777766666666666555555 4577777754443
No 269
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=54.62 E-value=1.3e+02 Score=32.06 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhH
Q 004160 397 ERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEF 442 (771)
Q Consensus 397 ErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekEL 442 (771)
+........+...++.++.+..+.|+..+++...++.+...+..++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 3333334444444444444444444444444444444443333333
No 270
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=54.27 E-value=3.3e+02 Score=29.89 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 320 KKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMT 370 (771)
Q Consensus 320 ~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~ 370 (771)
.+.|.+.++||.+-.+.+.+-=..++.|..+|...+...-++=.-+..||.
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD 112 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD 112 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566667776666666666666666666666666666566556666664
No 271
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.63 E-value=5.3e+02 Score=32.06 Aligned_cols=170 Identities=17% Similarity=0.151 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhhhccC
Q 004160 484 LSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVISNKN 563 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~s~~~ 563 (771)
+.....++..+.+.+..+......+-.+...+...+..--.-...+...+....-..-++..++...-..+..++.+.
T Consensus 379 ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~-- 456 (716)
T KOG4593|consen 379 ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASM-- 456 (716)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhh--
Confidence 344444555555544444444444444444444444333333333333444333333333444444433333333221
Q ss_pred cccCcCCcchHHhhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHH
Q 004160 564 DESSTSMPTDDMGLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKE 643 (771)
Q Consensus 564 ~~~dI~qlkdEIeeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~e 643 (771)
..++............++.++..+-..+.+.+..+.-.+.+.+--++=+-.++++++..+.|
T Consensus 457 ------------------~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~E 518 (716)
T KOG4593|consen 457 ------------------EELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEE 518 (716)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344445555666678888888888899999999999999988899999999999999999
Q ss_pred HHhHHhhhhChhhHHHHHHHHhhhhcccccc
Q 004160 644 LKKLEETVEDANDLRKLYALAQERFGEKSVG 674 (771)
Q Consensus 644 l~~~~~~~~d~~d~~~~~~~~~e~~~~~~~~ 674 (771)
=+.|...++ .-++.--|+.+.=|+.-.+-|
T Consensus 519 n~rLr~~~e-~~~l~gd~~~~~~rVl~~~~n 548 (716)
T KOG4593|consen 519 NDRLRAQLE-RRLLQGDYEENITRVLHMSTN 548 (716)
T ss_pred HHHHHHHHH-HHHHhhhhhhhccceeeecCC
Confidence 988854432 223333355555554444444
No 272
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=52.57 E-value=3.7e+02 Score=29.87 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhh
Q 004160 596 KQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDAND 656 (771)
Q Consensus 596 ~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d 656 (771)
.++....+.+..-+.+++.++...+.-+-+..++||..=.+....++.+.-+-+++.|.-|
T Consensus 253 eElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~~ 313 (330)
T KOG2991|consen 253 EELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKKD 313 (330)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3456666777778888889999999888899999998887777777777777666666544
No 273
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.52 E-value=77 Score=27.61 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
+..++..|+.++.-.+.-|++++.-+..-++.|+.+..++..|...+.++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666666666666666666666555555555555544
No 274
>PRK02119 hypothetical protein; Provisional
Probab=51.99 E-value=92 Score=27.68 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 458 EAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 458 eLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
.+..++..|+.++.-.+.-|++++.-+..-++.++.+..++..+..++..
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555444444433
No 275
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.71 E-value=3.6e+02 Score=29.59 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS----REEQLVQAMDTLQEKDEHVLILQNELDGTKL 538 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes----LEgqLeEleeeLkEkEE~L~~~q~ELNe~nI 538 (771)
.+...+.+..++.+++.++.+|...+..+.-+ ...++- .-=++..+...+......- ++++++++-
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L-------~TYkD~EYPvK~vqIa~L~rqlq~lk~~q---qdEldel~e 145 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFL-------STYKDHEYPVKAVQIANLVRQLQQLKDSQ---QDELDELNE 145 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33445555555555555555555555554443 333331 1112333333333333333 233333332
Q ss_pred hHHHH-HHHHHHHHHHHHHHhh
Q 004160 539 KVSEA-ETVVEQIVDLTHKLVI 559 (771)
Q Consensus 539 e~sQq-Etl~eRIeeLt~eLe~ 559 (771)
-+... .++..++...+.++..
T Consensus 146 ~~~~el~~l~~~~q~k~~~il~ 167 (258)
T PF15397_consen 146 MRQMELASLSRKIQEKKEEILS 167 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 5666666666666665
No 276
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=51.21 E-value=1.8e+02 Score=25.80 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
....+..+...|......+.....++...+..+-....+.+.+..+.+.
T Consensus 50 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~ 98 (123)
T PF02050_consen 50 YQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKER 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444454444544455444444
No 277
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.63 E-value=4.4e+02 Score=30.24 Aligned_cols=143 Identities=18% Similarity=0.272 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 350 LLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS 429 (771)
Q Consensus 350 ~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe 429 (771)
+|+...-.+.++-.-+----.|++.- .++-..++..+..|-++++....=+....+..+.++.-+-.+.++-.
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~-------q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~ 144 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEER-------QQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQ 144 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44444544544443333333333333 33334455566666666666666666666666666666666666666
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 430 SLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASL----QLILEEKDFELSNARQMLEELNNEVR 499 (771)
Q Consensus 430 sLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesL----q~ELEEIdeELeeiqrrLeeLr~ELk 499 (771)
.++-++..+..++.+.+.+...++.++.+....+..+.++.... .+-|..-+.-|..+.+++.++.-|+.
T Consensus 145 ~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~Eir 218 (401)
T PF06785_consen 145 CLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIR 218 (401)
T ss_pred HHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666677777777777766666665554322 33344444555555555555544443
No 278
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.46 E-value=2.9e+02 Score=30.81 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 004160 466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAET 545 (771)
Q Consensus 466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEt 545 (771)
+..+++++...++......+.+-.+|.-.+.|+..+...+..++.+-=.+-.+|..-++.| +..|..+=..|++..-
T Consensus 117 i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeL---qkly~~Y~l~f~nl~y 193 (338)
T KOG3647|consen 117 IQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEEL---QKLYQRYFLRFHNLDY 193 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH---HHHHHHHHHHHhhHHH
Confidence 3333333333333333333344444444444444444444444444444445555555444 3344445566666643
No 279
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.18 E-value=4.7e+02 Score=30.40 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.7
Q ss_pred HhHHHhHHHHHhHHHHHH
Q 004160 231 MLNEANEVVKKQETEIQS 248 (771)
Q Consensus 231 ~l~~an~~~~~qe~~~~~ 248 (771)
.|.-||-+=++|-+-|+.
T Consensus 34 yLkl~~~aDk~Q~~rIkq 51 (395)
T PF10267_consen 34 YLKLASNADKQQAARIKQ 51 (395)
T ss_pred HHHHhhhccHHHHHHHHH
Confidence 455566666666665543
No 280
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=50.11 E-value=3.8e+02 Score=29.92 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 374 DAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRK 438 (771)
Q Consensus 374 ~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqel 438 (771)
+-+.++++-+.+||.+-++..+|..+|-.-+-+++..+..+..+.+-.=....+.+...++|+.+
T Consensus 116 ~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkl 180 (338)
T KOG3647|consen 116 AIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34566777777777777777776666666555555555555555555555555666666665543
No 281
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.52 E-value=5e+02 Score=30.54 Aligned_cols=44 Identities=23% Similarity=0.165 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQA 471 (771)
Q Consensus 428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIe 471 (771)
.+.+..++..+..+...+...+...+.++..|+.+-.++.++..
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444445444444444433
No 282
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.47 E-value=6e+02 Score=31.47 Aligned_cols=97 Identities=20% Similarity=0.321 Sum_probs=63.6
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 334 QKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNE 413 (771)
Q Consensus 334 ~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~q 413 (771)
+.-+.+|+..+++-..-....+++++.=++-+.+.+..|-+.-.--. ...+.-..|..++..+..-+..++.+
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-------~~~k~e~tLke~l~~l~~~le~lr~q 118 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-------ISDKIEGTLKEQLESLKPYLEGLRKQ 118 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-------cccccCccHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888887777665433222 11122226666666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 414 LNKEKYSLQQAIDEVSSLQEELGR 437 (771)
Q Consensus 414 LqkekqeLEelqeEIesLQeELqe 437 (771)
...=..++-++..++..+-.++..
T Consensus 119 k~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 119 KDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666666666666544
No 283
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=49.43 E-value=3.1e+02 Score=28.22 Aligned_cols=128 Identities=25% Similarity=0.255 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q 004160 294 ALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQ-----KKSLTSY 368 (771)
Q Consensus 294 elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q-----~~~~~s~ 368 (771)
|=.-||+-.-+|+.+-.--+.-|.-|-+-|.--=-=--|= ==+--|++-++.-.+-++|-.+..-. =.-|++|
T Consensus 11 eDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFR--WNs~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~f 88 (161)
T TIGR02894 11 EDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFR--WNAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISF 88 (161)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcch--HHHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHH
Confidence 3344788888888888888888887777664210000000 00234666666655555554433210 1357888
Q ss_pred HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 369 MTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSS 430 (771)
Q Consensus 369 ~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIes 430 (771)
.++|+.-. .....++.++..|+..+..+.+++..|+.++..+.+.+..+.++...
T Consensus 89 Lq~l~~~~-------~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 89 LQNLKTTN-------PSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHhcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877432 22334455555666666666666666665555555555555444333
No 284
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=49.18 E-value=1.5e+02 Score=25.53 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 448 LLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEEL 494 (771)
Q Consensus 448 eIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeL 494 (771)
++..+.+.+..|..++.+|.+.+..+.-.+....++-...+.+|+..
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555555555555555555543
No 285
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.04 E-value=5.2e+02 Score=30.58 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 396 LERDLSMEKELVEELQNELNKEKYSLQQAIDEV 428 (771)
Q Consensus 396 LErqLlqlekeIeeLr~qLqkekqeLEelqeEI 428 (771)
++-.+-+++.+...++..+..++.-.+.+.++.
T Consensus 302 lqmr~qqleeentelRs~~arlksl~dklaee~ 334 (502)
T KOG0982|consen 302 LQMRDQQLEEENTELRSLIARLKSLADKLAEED 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333444444445555555555544444444433
No 286
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.03 E-value=3.4e+02 Score=33.83 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhHHHHHhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHH
Q 004160 145 EREIDVACSRHEKLEEELGQSNLKLVSQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSE 224 (771)
Q Consensus 145 e~~i~~a~~~~~~~e~~l~~~~~~l~~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e 224 (771)
+..|..|+.-.......+...-.+|..+-++++..+..++..-.++...+..|..+..++++-|.+++
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~------------ 563 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK------------ 563 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 45566666666555555555555555555555554444444444444444444444444443333332
Q ss_pred HhhHHHHhHHHhHHHHHhHHHHHHHHHHHHH
Q 004160 225 LKSKAQMLNEANEVVKKQETEIQSLRKVIQE 255 (771)
Q Consensus 225 ~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ 255 (771)
.....+||+.+++-..+++.+-+.++.
T Consensus 564 ----~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 564 ----LELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233456666666666666666666554
No 287
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.02 E-value=2.1e+02 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILE 478 (771)
Q Consensus 463 iEqLKsEIesLq~ELE 478 (771)
+++++.+-.++.++.+
T Consensus 27 ieELKEknn~l~~e~q 42 (79)
T COG3074 27 IEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHhhHhHHHHH
Confidence 3333333333333333
No 288
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=3.9e+02 Score=29.09 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004160 354 QLVELEEQKKSLTSYMTSL 372 (771)
Q Consensus 354 q~~el~~q~~~~~s~~~~l 372 (771)
=-..+..||+.+-+||+++
T Consensus 20 ~~~~i~n~~s~~D~f~q~~ 38 (246)
T KOG4657|consen 20 CEKDIHNQRSKIDSFIQSP 38 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888876
No 289
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.74 E-value=3.3e+02 Score=28.32 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 378 EVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEEL 435 (771)
Q Consensus 378 e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeEL 435 (771)
.+..+............+|+..+..++.....+.........++..++.+...+++++
T Consensus 118 ~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 118 KIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433333334444433333333333333333
No 290
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.65 E-value=2e+02 Score=25.67 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 395 ELERDLSMEKELVEELQNELNKEKYS 420 (771)
Q Consensus 395 ELErqLlqlekeIeeLr~qLqkekqe 420 (771)
.|+.++.++=..|.-|+.++..++..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 291
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.56 E-value=5.2e+02 Score=30.47 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhhhc
Q 004160 493 ELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 493 eLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~s~ 561 (771)
.+.++++.+...-..+.+.+.+.+..-.++.+.-.+...+|+...-+..+- .++..+|.-...++..+.
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555544444444444455555544444333 566666666666666544
No 292
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.43 E-value=1.1e+02 Score=27.14 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL 508 (771)
+..++..|+.++.-.+.-|+++..-+..-+..++.+..++..+..++..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666666666666666666655555555555544443
No 293
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=47.82 E-value=3.7e+02 Score=28.49 Aligned_cols=57 Identities=7% Similarity=0.114 Sum_probs=33.3
Q ss_pred hhhccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhh
Q 004160 583 GLDKGNDNFRLQTKQLEIELKF-ARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDA 639 (771)
Q Consensus 583 eLekereeLeeel~eLEqElee-lReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~ 639 (771)
.|....+.+......-+..+-. ..+++..+...|..-..+.-.-|.++-..|.+.+.
T Consensus 179 ~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~ 236 (247)
T PF06705_consen 179 ELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTK 236 (247)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3333334444444444444444 56666667777777777777777777776666554
No 294
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.66 E-value=4.7e+02 Score=29.75 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=53.4
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhH
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKE 641 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~ 641 (771)
..|-....+.....+.|+.++..+..++...+..|..+..++..|+.=||.+--||+.+-
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~ 306 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRT 306 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHh
Confidence 345666678888889999999999999999999999999999999999999999998854
No 295
>PRK04406 hypothetical protein; Provisional
Probab=47.50 E-value=1.3e+02 Score=26.88 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
+..++..|+.++.-.+.-|++++.-+..-+..|+.+..++..+..++.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555556666666655555555555555555555444443
No 296
>PRK00295 hypothetical protein; Provisional
Probab=47.09 E-value=1.2e+02 Score=26.47 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 460 KLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508 (771)
Q Consensus 460 q~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL 508 (771)
..++..|+.++.-.+.-|++++.-+..-+..|+.+..++..+..++..+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555555555555555444444443
No 297
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=47.00 E-value=4.2e+02 Score=29.00 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.2
Q ss_pred cCCcch
Q 004160 568 TSMPTD 573 (771)
Q Consensus 568 I~qlkd 573 (771)
|..+-+
T Consensus 211 I~AP~d 216 (346)
T PRK10476 211 VRAPFD 216 (346)
T ss_pred EECCCC
Confidence 333333
No 298
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.67 E-value=5.9e+02 Score=30.54 Aligned_cols=110 Identities=12% Similarity=0.171 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 443 GETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEK 522 (771)
Q Consensus 443 qElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEk 522 (771)
..+..+++...+++..-..++..+.+.+..++..--.--.+|.+++++.-++.-.+-.+--.+.-+...-..+...=+++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Confidence 34444444455555555555555555544444333333333333333333333322222222222222222333333445
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 004160 523 DEHVLILQNELDGTKLKVSEAETVVEQIVDLTHKLVI 559 (771)
Q Consensus 523 EE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt~eLe~ 559 (771)
..+++.+..++|.= ..+..|+..+...+.+
T Consensus 417 r~Kldtll~~ln~P-------nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 417 RAKLDTLLAQLNAP-------NQLKARLDELYEILRM 446 (508)
T ss_pred HHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHh
Confidence 55555555555443 4455555555555553
No 299
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.37 E-value=4.2e+02 Score=28.81 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 448 LLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKD 523 (771)
Q Consensus 448 eIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkE 523 (771)
.+.....+...+...+.+...++......+.+.......+...+.+.+.+++.+...++.++..+....+=+..+.
T Consensus 52 ~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 52 ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444455555555555555555555566666666666666666666666655555555555544444444433
No 300
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.34 E-value=3.3e+02 Score=27.55 Aligned_cols=6 Identities=33% Similarity=0.612 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004160 406 LVEELQ 411 (771)
Q Consensus 406 eIeeLr 411 (771)
.++.++
T Consensus 59 ~~~eLr 64 (177)
T PF07798_consen 59 AIAELR 64 (177)
T ss_pred HHHHHH
Confidence 333333
No 301
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=46.21 E-value=5.6e+02 Score=30.22 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHH---HHHHHHHHHHHHHHHHH
Q 004160 323 LSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESE---RVKLRVTEARNKELERD 399 (771)
Q Consensus 323 l~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~---~~~l~~aqsE~kELErq 399 (771)
|+..+.|.-..++-+...+.||+....+++.--..+..+ +.+|...+..+++-.... ..+++....++..+...
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee 352 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGE---QESFREQPQELSQQLEPELTTEAELRLYYQELYHYREE 352 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666654444444333333333 344444455555444444 34455555544444433
No 302
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.99 E-value=1.6e+02 Score=35.75 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=6.4
Q ss_pred ChhhHHHHHHHH
Q 004160 653 DANDLRKLYALA 664 (771)
Q Consensus 653 d~~d~~~~~~~~ 664 (771)
.|-|+.+||++-
T Consensus 254 ~p~eleklyslp 265 (907)
T KOG2264|consen 254 TPAELEKLYSLP 265 (907)
T ss_pred ChHhhhhhhcCc
Confidence 355555555553
No 303
>PRK04325 hypothetical protein; Provisional
Probab=45.79 E-value=1.3e+02 Score=26.70 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL 508 (771)
+..++..|+.++.-.+.-|+++..-+..-+..|+.+..++..+..++.+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666666666666666666666666666655555555555544443
No 304
>PRK00736 hypothetical protein; Provisional
Probab=45.16 E-value=1.2e+02 Score=26.59 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 461 LEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSS 507 (771)
Q Consensus 461 ~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIes 507 (771)
.++..|+.++.-.+.-|+++..-+..-++.|+.+..++..|..++.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555544444444443
No 305
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=45.02 E-value=9e+02 Score=32.24 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=50.3
Q ss_pred hhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHH-----HhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHH
Q 004160 132 SELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLV-----SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEK 206 (771)
Q Consensus 132 ~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~-----~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~ 206 (771)
..|-.+-..+++-...|.....++..++.=++. +.... ..+.+.-..+..+.....++..+...+...+.++++
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~-y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEALERALRNFLQR-YRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERE 301 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888777777654432 33222 233344444445555555555555555555555555
Q ss_pred HHHHHHHhhHHHHhHHHH
Q 004160 207 MRSELLKKSEEAAKIDSE 224 (771)
Q Consensus 207 ~k~~~~~k~~e~~~~~~e 224 (771)
....+-....+...+..+
T Consensus 302 ~~~~~~~le~~~~~l~~~ 319 (1353)
T TIGR02680 302 LDARTEALEREADALRTR 319 (1353)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 544444444444333333
No 306
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.01 E-value=1.9e+02 Score=30.73 Aligned_cols=99 Identities=21% Similarity=0.220 Sum_probs=67.5
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHHHHH
Q 004160 585 DKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALA 664 (771)
Q Consensus 585 ekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~~~~ 664 (771)
|..++.++..+..+|..+...|..+++..............-..|+...|.|.+. =.|.|+.+.-.|-
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s------------Ws~~DleRFT~Ly 98 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS------------WSPADLERFTELY 98 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------CChHHHHHHHHHH
Confidence 4455777888888899999999999998888888888888888899999988765 3678887766665
Q ss_pred hhhhcccccchhHHHHHhHHHhhHHHHHhHHHH
Q 004160 665 QERFGEKSVGDLAIERLQLEAAQLEVEAATSAL 697 (771)
Q Consensus 665 ~e~~~~~~~~~~~~~~l~~eaa~~e~~aat~~l 697 (771)
..- -..-+..+--+..++.|+..++.+...|
T Consensus 99 r~d--H~~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 99 RND--HENEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred Hhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 320 0011122223444555555555555444
No 307
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=44.90 E-value=1.6e+02 Score=35.73 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHHHHHH
Q 004160 506 SSREEQLVQAMDTLQEK 522 (771)
Q Consensus 506 esLEgqLeEleeeLkEk 522 (771)
..+++.+++++-.++++
T Consensus 131 ~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 131 SALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 33444444444444443
No 308
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=44.13 E-value=8.6e+02 Score=31.75 Aligned_cols=352 Identities=25% Similarity=0.253 Sum_probs=190.7
Q ss_pred ccCchHHHhHhhHHHHHHHHHhhhhhHHHH-HHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHH----
Q 004160 94 QFGLNLEILESDLQAVLAALKKKEEDLEDA-ERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLK---- 168 (771)
Q Consensus 94 ~~~~~~~~l~s~~~~~l~~l~~ke~~l~~a-e~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~---- 168 (771)
-||+.-.-=.+.|.--|..|++|=+-|+-- |-+ -..|-+-+.+|+.-+.+|.+-+.-++..-.+-..|..+
T Consensus 163 sp~~~~~~~~~hL~velAdle~kir~LrqElEEK----~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdel 238 (1195)
T KOG4643|consen 163 SPYDIVVKKNLHLEVELADLEKKIRTLRQELEEK----FENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDEL 238 (1195)
T ss_pred CcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 445544444455666666666666665421 111 14566788899999999998888877777666665443
Q ss_pred --HHHhh-----------hhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHH-hhHHHHhHH
Q 004160 169 --LVSQA-----------RHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSELLKKSEEAAKIDSEL-KSKAQMLNE 234 (771)
Q Consensus 169 --l~~q~-----------~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~-~~k~~~l~~ 234 (771)
|..+| ..+.-+|-+|.+-.+.-++++..-..-++++.+++. .|+- +-+.||| ++|
T Consensus 239 dalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lra----rse~-~tleseiiqlk------ 307 (1195)
T KOG4643|consen 239 DALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRA----RSEG-ATLESEIIQLK------ 307 (1195)
T ss_pred HHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh----cccc-CChHHHHHHHH------
Confidence 12221 233445555655555555555555444555555543 2333 3333332 222
Q ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHhhHHhhhH
Q 004160 235 ANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQD--ALKKLAEEASRRMEETNDT 312 (771)
Q Consensus 235 an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~--elk~l~~~a~k~~~~~~~~ 312 (771)
++=..++.=+...+-|-++|-. +--+|.++-++| +.+|=+-|- |.+++...-. .--++-
T Consensus 308 ------qkl~dm~~erdtdr~kteeL~e-------EnstLq~q~eqL---~~~~ellq~~se~~E~en~Sl---~~e~eq 368 (1195)
T KOG4643|consen 308 ------QKLDDMRSERDTDRHKTEELHE-------ENSTLQVQKEQL---DGQMELLQIFSENEELENESL---QVENEQ 368 (1195)
T ss_pred ------HHHHHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHh---hhhhhHhhhhhcchhhhhhhH---HHHHHH
Confidence 2223333333333333333321 112333333333 122222221 2222222211 111112
Q ss_pred HHhHHHHHHHHHHHH---------H----HHh-------hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160 313 LEDFRRVKKLLSDVR---------S----ELV-------SSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSL 372 (771)
Q Consensus 313 ~~df~rv~~ll~~vr---------~----el~-------~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l 372 (771)
++.=+-+|.||.+=| + +++ .-.+.|.--=+.||+--.++.+|+++|++-=+-++ .-+
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~---~E~ 445 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ---FEL 445 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 222222222222211 1 122 22234444456788999999999999988665544 344
Q ss_pred HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHH
Q 004160 373 KDAQVEVESERVKLRVTEARN---KELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLL 449 (771)
Q Consensus 373 ~~a~~e~~~~~~~l~~aqsE~---kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeI 449 (771)
+.++.++..-+.-+..-..++ ..+-..+-+......++.+.+.++.++|++-..+++++......+...+.+.....
T Consensus 446 ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qy 525 (1195)
T KOG4643|consen 446 EKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQY 525 (1195)
T ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543332222221122 22333344566677778888889999999998888888888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004160 450 RVKESDLVEAKLEIQNLKSKQASLQLILEEKDF 482 (771)
Q Consensus 450 eelEnELeeLq~eiEqLKsEIesLq~ELEEIde 482 (771)
....+.+..|....-.++.+-..+..+|..+..
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 888888888888877777777777777776654
No 309
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.06 E-value=5.7e+02 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 389 TEARNKELERDLSMEKELVEELQN 412 (771)
Q Consensus 389 aqsE~kELErqLlqlekeIeeLr~ 412 (771)
+..++.++......++..+..|..
T Consensus 217 ~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 217 ILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 310
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.56 E-value=1.5e+02 Score=31.87 Aligned_cols=24 Identities=13% Similarity=0.030 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 500 ELKMIMSSREEQLVQAMDTLQEKD 523 (771)
Q Consensus 500 ELKslIesLEgqLeEleeeLkEkE 523 (771)
.++..+..|.|++++.+..++...
T Consensus 65 ~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 65 DNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 311
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.12 E-value=2.6e+02 Score=25.44 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLK 467 (771)
Q Consensus 413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLK 467 (771)
-++..+++++.+..+....+..-..++..+..--..++..++.+-+|......++
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK 59 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444444444444444444444444443333
No 312
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=7.2e+02 Score=30.42 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 399 DLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 399 qLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
.+..++++++.++....++..+++......+.|.+-
T Consensus 603 ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~ 638 (741)
T KOG4460|consen 603 DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR 638 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444455555555555555555555555554444444
No 313
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.60 E-value=6.6e+02 Score=29.95 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=12.4
Q ss_pred CCCCcccccCchHHHhHh
Q 004160 87 SGVGKDVQFGLNLEILES 104 (771)
Q Consensus 87 ~~l~~~~~~~~~~~~l~s 104 (771)
..||.|.||.+++..|..
T Consensus 105 e~lp~dsQ~a~~~~~l~r 122 (521)
T KOG1937|consen 105 EKLPADSQEAVSLDQLHR 122 (521)
T ss_pred hhCCccccccchHHHHHH
Confidence 356677777777777665
No 314
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.58 E-value=5.3e+02 Score=28.89 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 004160 476 ILEEKDFELSNARQMLEELNNEVRELKMIMSSR-----EEQL--VQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVE 548 (771)
Q Consensus 476 ELEEIdeELeeiqrrLeeLr~ELkELKslIesL-----EgqL--eEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~e 548 (771)
-|..++.+|.+..++|.+-..|+.+|++++..+ |+.= .+++=.|++....|.+++..+. |+..
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvie----------Tmrs 138 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIE----------TMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHh
Confidence 344455555555555555556666666655544 2222 2333344444444444444333 3444
Q ss_pred HHHHHHHHHhhhccCcccCcCCcchHHhhHhhhhhhh
Q 004160 549 QIVDLTHKLVISNKNDESSTSMPTDDMGLELMQQGLD 585 (771)
Q Consensus 549 RIeeLt~eLe~s~~~~~~dI~qlkdEIeeeL~~qeLe 585 (771)
.+.+.-.-+.+.= +||+...-.++.-| +.|+
T Consensus 139 sL~ekDkGiQKYF----vDINiQN~KLEsLL--qsME 169 (305)
T PF15290_consen 139 SLAEKDKGIQKYF----VDINIQNKKLESLL--QSME 169 (305)
T ss_pred hhchhhhhHHHHH----hhhhhhHhHHHHHH--HHHH
Confidence 4444444445533 45554444555555 5554
No 315
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=42.39 E-value=2.5e+02 Score=31.91 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQAS 472 (771)
Q Consensus 393 ~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIes 472 (771)
+.+++.++-+..=--+.|+|+..++--....+...+..+..+|..--.++.+..+.+........-|+...+++++.|..
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444455555555554454555555555555555555556666666666666666666666666666666
Q ss_pred HHHHHHh
Q 004160 473 LQLILEE 479 (771)
Q Consensus 473 Lq~ELEE 479 (771)
-...|++
T Consensus 201 Rdeliee 207 (405)
T KOG2010|consen 201 RDELIEE 207 (405)
T ss_pred HHHHHHH
Confidence 6665553
No 316
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.29 E-value=3.2e+02 Score=31.03 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=25.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 448 LLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL 501 (771)
Q Consensus 448 eIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL 501 (771)
+.+.+..+..+++.....+.++++.+..........+..-+.++.++...++.+
T Consensus 5 EW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 5 EWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444544555555554444444433
No 317
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=41.82 E-value=6.9e+02 Score=30.00 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 317 RRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKEL 396 (771)
Q Consensus 317 ~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kEL 396 (771)
-+.|.-++.+ -|-|++-+-+.+.++..++.-.-|+.-. .-..+||.-++--..+- .-++..++.++..-
T Consensus 274 ~~lk~~n~~l-~e~i~ea~k~s~~i~~l~ek~r~l~~D~-------nk~~~~~~~mk~K~~~~---~g~l~kl~~eie~k 342 (622)
T COG5185 274 ANLKTQNDNL-YEKIQEAMKISQKIKTLREKWRALKSDS-------NKYENYVNAMKQKSQEW---PGKLEKLKSEIELK 342 (622)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHhc---chHHHHHHHHHHHH
Confidence 3444443333 3556676777777777666655544332 23456776666544333 33455556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004160 397 ERDLSMEKELVEELQNELNK 416 (771)
Q Consensus 397 ErqLlqlekeIeeLr~qLqk 416 (771)
++++--+...+..|+.++.+
T Consensus 343 Eeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 343 EEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 66666666666666655544
No 318
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=41.57 E-value=5.3e+02 Score=28.61 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 479 EKDFELSNARQMLEELNNEVRELKM 503 (771)
Q Consensus 479 EIdeELeeiqrrLeeLr~ELkELKs 503 (771)
....+|..+..+..=+..|+.+-..
T Consensus 137 DfeqrLnqAIErnAfLESELdEke~ 161 (333)
T KOG1853|consen 137 DFEQRLNQAIERNAFLESELDEKEV 161 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444444433343333333
No 319
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=41.46 E-value=4.1e+02 Score=27.24 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 495 NNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 495 r~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
+.++..+-..|+....++.-+...+..++..|....+.||+.+-+-.++
T Consensus 83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~L 131 (159)
T PF04949_consen 83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQL 131 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666666666666666666666666655554444
No 320
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=41.29 E-value=5.4e+02 Score=28.61 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=81.2
Q ss_pred HHHHHHHHHH-HHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 004160 354 QLVELEEQKK-SLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAI------- 425 (771)
Q Consensus 354 q~~el~~q~~-~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelq------- 425 (771)
=++-++.++. ++..|.+||+..+... ..++..+.-+-.-|-.++..-+.++.++..++..+++-..=..
T Consensus 94 ~v~a~e~~~~rll~d~i~nLk~se~~l---kqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l 170 (330)
T KOG2991|consen 94 YVQALEGKYTRLLSDDITNLKESEEKL---KQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL 170 (330)
T ss_pred HHHHhcCcccchhHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 3444555543 4556888887654332 2333444444445555566666666666666665555432111
Q ss_pred ------HHHHHHHHHHhHHhhhHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 426 ------DEVSSLQEELGRKNTEFGETENLLRV------------KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNA 487 (771)
Q Consensus 426 ------eEIesLQeELqelekELqElekeIee------------lEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeei 487 (771)
..+..|+.++.+.+..+.+.+..|.. +....-.|+.+-+++-.... ..+|..+
T Consensus 171 lDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s---------~Gria~L 241 (330)
T KOG2991|consen 171 LDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQAS---------EGRIAEL 241 (330)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhh---------cccHHHH
Confidence 12333333333333333333333321 12222222222222221111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 004160 488 RQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKV 540 (771)
Q Consensus 488 qrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~ 540 (771)
.-+|.=-+..-.++++..+.+-+|+.++.+.......-+-.++.+|-+++-++
T Consensus 242 e~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~I 294 (330)
T KOG2991|consen 242 EIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEI 294 (330)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 23333223334466666666777777777776666666666666555555433
No 321
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=40.96 E-value=3.9e+02 Score=26.81 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL 501 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL 501 (771)
+...+++-+..+.-.+.++..+++.|..++.-|....+..+..
T Consensus 82 a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~ 124 (136)
T PF11570_consen 82 AQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQK 124 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 4444444444444444455555544444444444444433333
No 322
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.37 E-value=7.1e+02 Score=29.69 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 004160 606 RENLRMKEMEVLAA 619 (771)
Q Consensus 606 ReeLrEkE~eLrel 619 (771)
+.-+..+...|.++
T Consensus 281 k~H~~svr~HI~~L 294 (475)
T PRK10361 281 QEHIASVRNHIRLL 294 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 323
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=39.95 E-value=8.6e+02 Score=30.52 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=8.0
Q ss_pred HHHHHHHHhhccc
Q 004160 700 LTEMSGELLNKAS 712 (771)
Q Consensus 700 l~~~s~~~l~~~~ 712 (771)
|-.+-.++|++-.
T Consensus 747 Lr~~v~~~L~~~~ 759 (782)
T PRK00409 747 LRKGVQEFLKKHP 759 (782)
T ss_pred HHHHHHHHHcCCC
Confidence 3445677887644
No 324
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=39.56 E-value=6.1e+02 Score=28.73 Aligned_cols=106 Identities=13% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 451 VKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530 (771)
Q Consensus 451 elEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q 530 (771)
.++..-..+...+++|.+--.+...........|...-..+. .-+..+.++-..+-.++.-+-..|+.....+..++
T Consensus 217 t~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit---~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~ 293 (384)
T KOG0972|consen 217 TLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEIT---KALEKIASREKSLNNQLASLMQKFRRATDTLSELR 293 (384)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhHHHH----HHHHHHHHHHHHHHhh
Q 004160 531 NELDGTKLKVSEA----ETVVEQIVDLTHKLVI 559 (771)
Q Consensus 531 ~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~ 559 (771)
..|++.+..++.. .++-..|+..+++++.
T Consensus 294 e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 294 EKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 325
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=39.09 E-value=5.7e+02 Score=30.04 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 004160 514 QAMDTLQEKDEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 514 EleeeLkEkEE~L~~~q~ELNe~nIe~sQq 543 (771)
.++-+....++.|...-..|..-+++-.++
T Consensus 355 ~L~le~efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 355 DLRLQSEIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555555554444
No 326
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=38.48 E-value=2.6e+02 Score=25.51 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=49.0
Q ss_pred hHHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHH
Q 004160 98 NLEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLE 159 (771)
Q Consensus 98 ~~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e 159 (771)
.+..+..||..+|..+..-=+||..|=..|--+..+-+-+..++.+|..-|.........|+
T Consensus 36 e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 36 ELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 46678899999998887666666666666666999999999999999999998887766653
No 327
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=38.29 E-value=6.6e+02 Score=28.75 Aligned_cols=170 Identities=21% Similarity=0.185 Sum_probs=89.7
Q ss_pred HHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHhhhHH
Q 004160 366 TSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEEL--GRKNTEFG 443 (771)
Q Consensus 366 ~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeEL--qelekELq 443 (771)
+--|.+|-+|- -++.+...|-.....+.++-......-+=+-.......+++.-++. .++..+ +.++.-++
T Consensus 11 ll~m~~l~~~~-~~eekik~L~~~~~d~~e~~~~v~~~~kvlq~k~~t~~kek~~~Q~------l~kt~larsKLeelCR 83 (391)
T KOG1850|consen 11 LLSMEGLPDAE-KVEEKIKKLAESEKDNAELKIKVLDYDKVLQVKDLTEKKEKRNNQI------LLKTELARSKLEELCR 83 (391)
T ss_pred HHHHhcCCccc-cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 33466666653 2444555555555555555555555555444445555544444331 122221 12333444
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 444 ETENLLRVKES-DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEK 522 (771)
Q Consensus 444 ElekeIeelEn-ELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEk 522 (771)
++++.+....+ -+..++...+..+.-++.++.-+.+++-.++.-+..-+.++..-..|......+-.++.....-+...
T Consensus 84 elQr~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~ 163 (391)
T KOG1850|consen 84 ELQRANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQ 163 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444443333 34445555555555666666666666666666666666666665666666666666666655555555
Q ss_pred HHHHHHHHHhhhhhhhhHHHH
Q 004160 523 DEHVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 523 EE~L~~~q~ELNe~nIe~sQq 543 (771)
.++++ +..+|...+.....+
T Consensus 164 ~e~ke-l~~ql~~aKlq~~~~ 183 (391)
T KOG1850|consen 164 IQKKE-LWEQLGKAKLQEIKL 183 (391)
T ss_pred HHHHH-HHHHHhHHHHHHHHH
Confidence 55555 555665555544444
No 328
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.93 E-value=2.7e+02 Score=26.98 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=32.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 477 LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 477 LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
++.+......+....-++.+++..++..+...-..+..+...|..+...+..++..|+-
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~ 94 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSP 94 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 33333333333344444446666666666666666677777777777666666555554
No 329
>PRK02119 hypothetical protein; Provisional
Probab=37.90 E-value=2e+02 Score=25.55 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=19.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 473 LQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDT 518 (771)
Q Consensus 473 Lq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleee 518 (771)
++.++.++..+++-....++.++..+-.....++.+...+..+...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444333333
No 330
>PRK00846 hypothetical protein; Provisional
Probab=37.16 E-value=2.3e+02 Score=25.82 Aligned_cols=43 Identities=19% Similarity=0.144 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 461 LEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKM 503 (771)
Q Consensus 461 ~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKs 503 (771)
.++..|+.++.-.+.-|++++.-+...+..++.+..++..+..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444333333333333
No 331
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.75 E-value=2.8e+02 Score=24.90 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVE 408 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIe 408 (771)
.+..+++++|.|.=+++-++..+.
T Consensus 8 ~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 8 QIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345555556655555555555554
No 332
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=35.98 E-value=5.1e+02 Score=26.77 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004160 296 KKLAEEASR 304 (771)
Q Consensus 296 k~l~~~a~k 304 (771)
|+|...|+|
T Consensus 15 KELEK~~pK 23 (188)
T PF03962_consen 15 KELEKLAPK 23 (188)
T ss_pred HHHHHHccc
Confidence 333333333
No 333
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=35.38 E-value=2.4e+02 Score=28.83 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHH-----HHHHHHHHHHHHHHhhhc
Q 004160 516 MDTLQEKDEHVLILQNELDGTKLKVSEA-----ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 516 eeeLkEkEE~L~~~q~ELNe~nIe~sQq-----Etl~eRIeeLt~eLe~s~ 561 (771)
.+.++.+.--+...+..+|-.+-+..+. +++.++|..+..-+++++
T Consensus 85 e~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~ 135 (157)
T COG3352 85 EENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVI 135 (157)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444444443 566677777777777666
No 334
>PF14282 FlxA: FlxA-like protein
Probab=35.20 E-value=2.4e+02 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 496 NEVRELKMIMSSREEQLVQAMDTL 519 (771)
Q Consensus 496 ~ELkELKslIesLEgqLeEleeeL 519 (771)
.....|..+|..++.++..+....
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 335
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.94 E-value=2.8e+02 Score=30.06 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=20.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 449 LRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEEL 494 (771)
Q Consensus 449 IeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeL 494 (771)
+..+...-...+.+..+|+.++......+..++.++..++..--.+
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443333
No 336
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=34.75 E-value=5.8e+02 Score=27.03 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHhHHHHHH
Q 004160 441 EFGETENLLRVKESDLVEAK 460 (771)
Q Consensus 441 ELqElekeIeelEnELeeLq 460 (771)
.|...+...+.++..+.-..
T Consensus 120 ~ia~~~~ra~~LqaDl~~~~ 139 (192)
T PF11180_consen 120 LIAESEARANRLQADLQIAR 139 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 337
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=34.71 E-value=2.4e+02 Score=26.52 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=11.3
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 584 LDKGNDNFRLQTKQLEIELKFARENLRMK 612 (771)
Q Consensus 584 LekereeLeeel~eLEqEleelReeLrEk 612 (771)
+.++...+...+..+.+.+..++..++.+
T Consensus 91 l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 91 LKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333333333
No 338
>PRK10698 phage shock protein PspA; Provisional
Probab=34.62 E-value=5.8e+02 Score=26.99 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHH---HHHhHHHHHHHHHHHHHHHHH
Q 004160 318 RVKKLLSDVRSELVSSQKSLAS---SRKQMEEQEHLLGKQLVELEE 360 (771)
Q Consensus 318 rv~~ll~~vr~el~~s~~~~~~---sr~~~e~q~~~l~~q~~el~~ 360 (771)
=++-++.+++..|+..+.+++. +++.++-|-..++......+.
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~ 73 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE 73 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655 344455444444444444443
No 339
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.23 E-value=1.1e+03 Score=29.67 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.2
Q ss_pred HHHHHHHHhhccc
Q 004160 700 LTEMSGELLNKAS 712 (771)
Q Consensus 700 l~~~s~~~l~~~~ 712 (771)
|-.+-.++|..-.
T Consensus 736 Lr~~v~~~L~~~~ 748 (771)
T TIGR01069 736 LRKGVQELLKNHP 748 (771)
T ss_pred HHHHHHHHhcCCc
Confidence 4455677887644
No 340
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=33.19 E-value=9.9e+02 Score=29.28 Aligned_cols=58 Identities=28% Similarity=0.165 Sum_probs=38.0
Q ss_pred hHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004160 306 MEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLK 373 (771)
Q Consensus 306 ~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~ 373 (771)
..++..|+-==.|.|.+=+-|.- ..-.++++....++++...+.-++.-++-+..+|+
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~----------n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWV----------NLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred ccccccchhhccccccccchhhh----------hhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34444555434455666555442 23456788888888888888888887777777777
No 341
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.11 E-value=4.1e+02 Score=29.79 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 402 MEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQ 474 (771)
Q Consensus 402 qlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq 474 (771)
+++.....|..+..+..+.++.+..++....+.+.+-.. ++...+..+.+.+..+..-++.+++++..+.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344455555666666666666666666666665544222 4444555555555555554555555444443
No 342
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.04 E-value=2.3e+02 Score=24.65 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004160 476 ILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDT 518 (771)
Q Consensus 476 ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleee 518 (771)
+|.++..+++-....++.++..+-.....++.++..+..+...
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333333333333333333
No 343
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.33 E-value=6.8e+02 Score=27.14 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=49.7
Q ss_pred HHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 004160 297 KLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLV----ELEEQKKSLTSYMTSL 372 (771)
Q Consensus 297 ~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~----el~~q~~~~~s~~~~l 372 (771)
++.+-.+|+..+..+-..+|.+|-+|+...=.+|-.+=..|+.+ |+-.+..+..+.. .+.+.=+-..+|..++
T Consensus 75 ki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~---~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~sl 151 (243)
T cd07666 75 KISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASC---IDRCCKATDKRMKGLSEQLLPVIHEYVLYSETL 151 (243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556778888999999999999888887777777765 5534444444444 4444555556677777
Q ss_pred HH
Q 004160 373 KD 374 (771)
Q Consensus 373 ~~ 374 (771)
++
T Consensus 152 K~ 153 (243)
T cd07666 152 MG 153 (243)
T ss_pred HH
Confidence 65
No 344
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=32.13 E-value=4.8e+02 Score=25.26 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=58.1
Q ss_pred hHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHH
Q 004160 372 LKDAQVEVESERVKLR-VTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLR 450 (771)
Q Consensus 372 l~~a~~e~~~~~~~l~-~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIe 450 (771)
|=|-||+. .+|+ ...+++|+|.+.++.+++.+-.++..-++.-.............+..-+.+..++-.+.....
T Consensus 12 LVDLQIe~----~rL~Eq~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~~ 87 (108)
T PF14739_consen 12 LVDLQIET----NRLREQHEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQELQEEYVSLKKNYQ 87 (108)
T ss_pred HHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445544 3444 348999999999999999999998887766666666666555555555555555555555555
Q ss_pred HHHhHHHHHHHHHHH
Q 004160 451 VKESDLVEAKLEIQN 465 (771)
Q Consensus 451 elEnELeeLq~eiEq 465 (771)
.+...+..=..+-++
T Consensus 88 a~~k~~~~e~~k~qe 102 (108)
T PF14739_consen 88 ALPKAFEAEVAKNQE 102 (108)
T ss_pred HHHHhhccHHHHHHH
Confidence 555554444443333
No 345
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.98 E-value=5.9e+02 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 457 VEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE 492 (771)
Q Consensus 457 eeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe 492 (771)
..+..++..++.++..+...+.++..+...+.++..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 346
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.93 E-value=7.4e+02 Score=27.40 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=69.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHH--------------hhhHHHhHHHHHHHHHH
Q 004160 260 LEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEE--------------TNDTLEDFRRVKKLLSD 325 (771)
Q Consensus 260 ~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~--------------~~~~~~df~rv~~ll~~ 325 (771)
+=.+++--|+|-.||=-|- || |=+||=+++...-.-+.. +..-+.|.+.++.|-+
T Consensus 59 ~~~tKa~IKLN~KkLY~AD--------Gy--AVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Las- 127 (267)
T PF10234_consen 59 FMATKARIKLNPKKLYQAD--------GY--AVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLAS- 127 (267)
T ss_pred HHHHHhheeecHHHHHHhh--------HH--HHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHH-
Confidence 3345555666777765442 22 445666665543333322 2233667777776643
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 004160 326 VRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVEVE----SERVKLRVTEARNKELERDLS 401 (771)
Q Consensus 326 vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e~~----~~~~~l~~aqsE~kELErqLl 401 (771)
|+.+.=.+|- .+|.+.+ ++.+.|...++--..+....--|+ +=..++...+..+.++...-.
T Consensus 128 ---eit~~GA~Ly----------dlL~kE~-~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~ 193 (267)
T PF10234_consen 128 ---EITQRGASLY----------DLLGKEV-ELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEA 193 (267)
T ss_pred ---HHHHHHHHHH----------HHHhchH-hHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444432 3566666 677777777664444433332222 222233333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 402 MEKELVEELQNELNKEKYSLQQAI 425 (771)
Q Consensus 402 qlekeIeeLr~qLqkekqeLEelq 425 (771)
.++.+|.....++++.+++|..++
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554443
No 347
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=31.64 E-value=6.2e+02 Score=26.41 Aligned_cols=11 Identities=36% Similarity=0.576 Sum_probs=5.2
Q ss_pred HHHHHHHHhhh
Q 004160 362 KKSLTSYMTSL 372 (771)
Q Consensus 362 ~~~~~s~~~~l 372 (771)
+..+.+|+.+|
T Consensus 68 ~~~f~~~~~tl 78 (190)
T PF05266_consen 68 RSSFESLMKTL 78 (190)
T ss_pred HHHHHHHHHHH
Confidence 44444454444
No 348
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=31.43 E-value=2.9e+02 Score=25.11 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 004160 487 ARQMLEEL 494 (771)
Q Consensus 487 iqrrLeeL 494 (771)
...++.++
T Consensus 16 vd~KVdaL 23 (75)
T PF05531_consen 16 VDDKVDAL 23 (75)
T ss_pred HHHHHHHH
Confidence 33333333
No 349
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=31.31 E-value=5.4e+02 Score=25.68 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH
Q 004160 396 LERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE 458 (771)
Q Consensus 396 LErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee 458 (771)
-...+......+..+.++|..+.............|...+.........-++.|..+.++-..
T Consensus 31 a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~ 93 (135)
T TIGR03495 31 ANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENED 93 (135)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 333333334444444444444444444444444445555444444444444444444444333
No 350
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=30.89 E-value=4.3e+02 Score=31.88 Aligned_cols=51 Identities=14% Similarity=0.349 Sum_probs=40.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 311 DTLEDFRRVKKLLSDVRSELVSSQKSLASSRKQMEEQEHLLGKQLVELEEQ 361 (771)
Q Consensus 311 ~~~~df~rv~~ll~~vr~el~~s~~~~~~sr~~~e~q~~~l~~q~~el~~q 361 (771)
.+..||.+-+.=++.|.+|.-.-+..+.+-+..++..-.++++|+.+|+..
T Consensus 209 k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 209 KNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 455677788888888888888888888888888888888888888887643
No 351
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.55 E-value=4.9e+02 Score=29.99 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHHHHHHhhcccc
Q 004160 692 AATSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 692 aat~~l~kl~~~s~~~l~~~~~ 713 (771)
.+...+..+.++...++..-.+
T Consensus 295 ~s~~~~~~~~~~~~~i~~~Lgl 316 (418)
T TIGR00414 295 ESAEELEEMTSDAEQILQELEL 316 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3556788888888888876444
No 352
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.48 E-value=1.1e+03 Score=28.76 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhhHHHhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 004160 290 LSQDALKKLAEEASRRMEETNDTLEDFRRVKKLLSDVRSELVSSQKSLASSR 341 (771)
Q Consensus 290 ~~q~elk~l~~~a~k~~~~~~~~~~df~rv~~ll~~vr~el~~s~~~~~~sr 341 (771)
.+++++--|..+- +.++-+++++-.|-|+-+++.|+.-|+-+..++++...
T Consensus 78 ~vt~~~~ql~kEK-~~~~m~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q~~ 128 (613)
T KOG0992|consen 78 TVTQGLQQLQKEK-TRVDMTNEILLESVRKAQTQKDIKCEEEAKIKNLQQIE 128 (613)
T ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555665555555 77788889999999999999999999999988887654
No 353
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=30.46 E-value=4.3e+02 Score=24.21 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 498 VRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 498 LkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
...+......+...+..++..+...+..+
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEEL 97 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 354
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=30.38 E-value=6.5e+02 Score=26.28 Aligned_cols=45 Identities=16% Similarity=0.301 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHhhhHHHhHH-HHHHHHHHHHHHHhhhhhHHHHH
Q 004160 296 KKLAEEASRRMEETNDTLEDFR-RVKKLLSDVRSELVSSQKSLASS 340 (771)
Q Consensus 296 k~l~~~a~k~~~~~~~~~~df~-rv~~ll~~vr~el~~s~~~~~~s 340 (771)
+++.....-.+.+.-+.++|=- =+.-++.+++..|.-.+.+++..
T Consensus 5 ~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~ 50 (219)
T TIGR02977 5 SRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSART 50 (219)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555533 45666777777777777777653
No 355
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=30.26 E-value=5.1e+02 Score=29.62 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 444 ETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKD 523 (771)
Q Consensus 444 ElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkE 523 (771)
+++-.......-...|-++..++==++..+.-.+++.+++|+...+.-.++..|++-+|-.++-|.-...++...|.+-+
T Consensus 123 EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRd 202 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD 202 (405)
T ss_pred HHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444555556677777888889999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 004160 524 EHVLI 528 (771)
Q Consensus 524 E~L~~ 528 (771)
+-|+.
T Consensus 203 eliee 207 (405)
T KOG2010|consen 203 ELIEE 207 (405)
T ss_pred HHHHH
Confidence 87754
No 356
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.17 E-value=6.1e+02 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=19.5
Q ss_pred HHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHH
Q 004160 629 ELKTVLGRLDAKEKELKKLEETVEDANDLRKLY 661 (771)
Q Consensus 629 elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~ 661 (771)
=+.+.+||.-. +..+.||+-||.|+
T Consensus 249 aMTALIGRVPI--------dG~V~DPyPFKvLI 273 (472)
T TIGR03752 249 AMTALIGRVPI--------DGTVTDPYPFKVLI 273 (472)
T ss_pred HHHHHhccccc--------CCEecCCcceeEEe
Confidence 36777888766 77888999998775
No 357
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=30.09 E-value=9.5e+02 Score=28.11 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=51.4
Q ss_pred HHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 364 SLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDE 427 (771)
Q Consensus 364 ~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeE 427 (771)
-+.-||+.|.+-..+.++.+..-....+++..-+.-+.-+.+-|.+.++++..++.-++...+-
T Consensus 140 ~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~ 203 (464)
T KOG4637|consen 140 KLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDR 203 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 3456888898888888888888888888888888888888888888888888877766555444
No 358
>PRK00295 hypothetical protein; Provisional
Probab=29.85 E-value=3.4e+02 Score=23.79 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 475 LILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ 520 (771)
Q Consensus 475 ~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk 520 (771)
.+|.++..+++-....++.++..+-.....++.+..++..+...++
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444433333
No 359
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.63 E-value=1.4e+03 Score=29.97 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=107.8
Q ss_pred HHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H------------HHHHHHHHHHHHHH
Q 004160 365 LTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNEL---N------------KEKYSLQQAIDEVS 429 (771)
Q Consensus 365 ~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qL---q------------kekqeLEelqeEIe 429 (771)
++--.+.|.+|+-+++.-...|+.+..++..++..-..+..--..+...+ . ++-..++.+..++.
T Consensus 672 ~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~ 751 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVE 751 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHH
Confidence 34445567778888888788888777777766654443333222222221 1 11223333334444
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 430 SLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 430 sLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
.++.++......+..+...+..++........ .-..++..+.++|..+..++...........+++..|.-..+.++
T Consensus 752 e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~---~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~ 828 (1174)
T KOG0933|consen 752 ESEQQIKEKERALKKCEDKISTLEKKMKDAKA---NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELE 828 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444332 234456666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH----HHHHHHHHHHHHHHhh
Q 004160 510 EQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA----ETVVEQIVDLTHKLVI 559 (771)
Q Consensus 510 gqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq----Etl~eRIeeLt~eLe~ 559 (771)
+.+.-....+......+..+..++..+...+... ..+...|.+....+..
T Consensus 829 ~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 829 KEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666665 3444444444444443
No 360
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.63 E-value=4.8e+02 Score=24.51 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004160 498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELD 534 (771)
Q Consensus 498 LkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELN 534 (771)
.+.++..+..+...+..++..+.++.+++..+...++
T Consensus 88 ~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 88 IEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666666666666666666655555543
No 361
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.37 E-value=4.6e+02 Score=24.26 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 492 EELNNEVRELKMIMSSREEQLVQAMDTLQ 520 (771)
Q Consensus 492 eeLr~ELkELKslIesLEgqLeEleeeLk 520 (771)
+.+...+..|..-+..+.++...++..|+
T Consensus 69 d~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 69 DQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444555555555555555544443
No 362
>PRK00846 hypothetical protein; Provisional
Probab=29.08 E-value=4.5e+02 Score=23.99 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 473 LQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQE 521 (771)
Q Consensus 473 Lq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkE 521 (771)
++.+|.++..++.-...-++.++..+-.....++.+..++.-+...|++
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443
No 363
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.08 E-value=1.6e+03 Score=30.27 Aligned_cols=137 Identities=21% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHH---HHhhhhHH-----HH
Q 004160 99 LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEE---ELGQSNLK-----LV 170 (771)
Q Consensus 99 ~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~---~l~~~~~~-----l~ 170 (771)
|.-|-+.++.+=..|.---++|-.-|.++++=.+.++.|-.+|+--+++-..--.-..+|++ -||.++.. +-
T Consensus 1227 i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r 1306 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTR 1306 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHH
Confidence 33344433333333333445666667777776777777777776555544333222222222 22332211 11
Q ss_pred HhhhhhHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHH---HHHhhHHHHhHHHHHhhHHHHhHHHhHH
Q 004160 171 SQARHIEDLKLRLKERDQEIAAMQSALSLKELELEKMRSE---LLKKSEEAAKIDSELKSKAQMLNEANEV 238 (771)
Q Consensus 171 ~q~~~i~~lk~~~~~~~~~~~~~~~~ls~k~~e~~~~k~~---~~~k~~e~~~~~~e~~~k~~~l~~an~~ 238 (771)
--..+--++.-+++.--.++++.-+-- --++-|.|-+.+ +..-++-+...+.++-+-. |..+|+-
T Consensus 1307 ~a~~~s~ea~~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~~~~n~~~L~el~~~l~sL~--L~~lne~ 1374 (1758)
T KOG0994|consen 1307 HAYEQSAEAERRVDASSRELASLVDQS-RVEELLVKQKGDFGGLAENSRLLVELRAELSSLP--LTPLNEQ 1374 (1758)
T ss_pred HHHHHHHHHHHhhhhhhhcccchhhhh-HHHHHHHHhhhcccccccccHHHHHHHHHhcCCC--CchhhHH
Confidence 111222234444444444444433321 223334444433 2334555556666666655 4444443
No 364
>PRK00736 hypothetical protein; Provisional
Probab=28.43 E-value=3.3e+02 Score=23.84 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 475 LILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTL 519 (771)
Q Consensus 475 ~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeL 519 (771)
.+|.++..++.-....++.++..+......++.+..++.-+...+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433
No 365
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.27 E-value=6.1e+02 Score=30.22 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 441 EFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFEL 484 (771)
Q Consensus 441 ELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeEL 484 (771)
-++.+-..+...+.++..+...=+.++.+-+.++.+-..++.++
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444444455555555555555555555555555555555433
No 366
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=28.15 E-value=1.3e+03 Score=29.14 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhhhhHHH
Q 004160 105 DLQAVLAALKKKEEDLED 122 (771)
Q Consensus 105 ~~~~~l~~l~~ke~~l~~ 122 (771)
||+.-+..|..|=++|+.
T Consensus 98 dfEkpi~ele~ki~el~~ 115 (762)
T PLN03229 98 DFEKPLVDLEKKIVDVRK 115 (762)
T ss_pred chhhHHHHHHHHHHHHHh
Confidence 688888888888888875
No 367
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=28.15 E-value=4.9e+02 Score=26.16 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004160 427 EVSSLQEEL 435 (771)
Q Consensus 427 EIesLQeEL 435 (771)
++..++.++
T Consensus 28 e~~~~k~ql 36 (155)
T PF06810_consen 28 ERDNLKTQL 36 (155)
T ss_pred HHHHHHHHH
Confidence 333333333
No 368
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.02 E-value=1.3e+03 Score=28.96 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=38.5
Q ss_pred HhhhhHHHHHHHHHhhhhhHHHHHHHHH----HHHHhhHHHHhHHHHHhhHHHHhHHHhHHHHHhHHHHHHHHHHHHHHH
Q 004160 182 RLKERDQEIAAMQSALSLKELELEKMRS----ELLKKSEEAAKIDSELKSKAQMLNEANEVVKKQETEIQSLRKVIQEKE 257 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~ls~k~~e~~~~k~----~~~~k~~e~~~~~~e~~~k~~~l~~an~~~~~qe~~~~~l~~~~~~ke 257 (771)
.....+..|--++..++.|--|+..++. -+.+...++-...-.++.....+..-=.-+++|-..++.....+..+.
T Consensus 134 ~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~ 213 (716)
T KOG4593|consen 134 QCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQ 213 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555544432 334444444444444444444444333444444444444444444444
Q ss_pred HHHHH
Q 004160 258 EELEA 262 (771)
Q Consensus 258 ~~~~~ 262 (771)
..+..
T Consensus 214 ~~l~e 218 (716)
T KOG4593|consen 214 ASLEE 218 (716)
T ss_pred HHHHH
Confidence 44433
No 369
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=27.87 E-value=4.3e+02 Score=24.25 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMD 517 (771)
Q Consensus 470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeElee 517 (771)
.+.+..++..++..|..+..+++.++.+...|.+.-+.|+.++..+..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666677777777777777777777777777776644
No 370
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=27.77 E-value=8.4e+02 Score=27.81 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 464 QNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ 520 (771)
Q Consensus 464 EqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk 520 (771)
+.++.+.+.++..|..+..+-.-+....+++..++.+-..++.-++.++.+-.+.|.
T Consensus 29 ~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~ 85 (328)
T PF15369_consen 29 ERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLT 85 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666667777777888888888888888888877665554
No 371
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=27.59 E-value=5e+02 Score=25.66 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENL 448 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqEleke 448 (771)
-.....|++++....+.|..|+.++.+.+..++.-...+..|+...+....++.+....
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777778888888888888888888887777777777777666666665555
No 372
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.25 E-value=1.6e+03 Score=29.95 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=50.4
Q ss_pred hhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHHhhhhHHHHH---------------hhhhhHHHHHHhhhhHHHHH
Q 004160 127 VCLEHSELNRAKEELLRREREIDVACSRHEKLEEELGQSNLKLVS---------------QARHIEDLKLRLKERDQEIA 191 (771)
Q Consensus 127 v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l~~~~~~l~~---------------q~~~i~~lk~~~~~~~~~~~ 191 (771)
+...+.++..++.++..-+..+..+......++..+..+...+-. .+++..+++-.++.....++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~ 350 (1353)
T TIGR02680 271 LRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA 350 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555444444322221 13444444455555555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhHHHHhHHHHH
Q 004160 192 AMQSALSLKELELEKMRSELLKKSEEAAKIDSEL 225 (771)
Q Consensus 192 ~~~~~ls~k~~e~~~~k~~~~~k~~e~~~~~~e~ 225 (771)
.....+..++.-.+..+..+-.-...+..+..++
T Consensus 351 ~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l 384 (1353)
T TIGR02680 351 DARQAIREAESRLEEERRRLDEEAGRLDDAEREL 384 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666555444555555544
No 373
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.95 E-value=21 Score=41.98 Aligned_cols=70 Identities=27% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHHHHHhhh-hcccccchhHHHHHhHHHhhHHHHHhHH
Q 004160 617 LAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQER-FGEKSVGDLAIERLQLEAAQLEVEAATS 695 (771)
Q Consensus 617 relrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~~~~~e~-~~~~~~~~~~~~~l~~eaa~~e~~aat~ 695 (771)
+.+++...-||-.+|.|+.||-+.|+||++=---+-.+-|.|.=+==|||+ |. -|.||+.-+.+|-+
T Consensus 422 ~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqrii~aQ~~~i~------------~Ldaan~Rl~sal~ 489 (495)
T PF12004_consen 422 ERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRIIDAQEKRIA------------ALDAANSRLMSALT 489 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHHHHHhhhhcc------------cccccccccccccc
Confidence 445566677889999999999999999998522122333444322224432 22 25677777777776
Q ss_pred HHH
Q 004160 696 ALQ 698 (771)
Q Consensus 696 ~l~ 698 (771)
.|+
T Consensus 490 ~lk 492 (495)
T PF12004_consen 490 QLK 492 (495)
T ss_dssp ---
T ss_pred ccc
Confidence 664
No 374
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=26.83 E-value=1e+03 Score=28.15 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 004160 286 MEWLLSQDALKKLAE 300 (771)
Q Consensus 286 ~~wl~~q~elk~l~~ 300 (771)
.+||..++=+..|..
T Consensus 143 ~dYI~SrDml~~Ld~ 157 (434)
T PRK15178 143 REFILSKEMMDRMEK 157 (434)
T ss_pred HHHHhhHHHHHHHHh
Confidence 345555555544443
No 375
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.68 E-value=1.6e+02 Score=30.09 Aligned_cols=70 Identities=16% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhhChhhHHHHHHHHh
Q 004160 593 LQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVEDANDLRKLYALAQ 665 (771)
Q Consensus 593 eel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~d~~d~~~~~~~~~ 665 (771)
..++.....+..++..+..++..++...+.+..-..+|..++ +.-...++.....-..+-+...|..+|.
T Consensus 22 ~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~---~~~~~~~~~~~~~~~~~v~~~eLL~YA~ 91 (188)
T PF10018_consen 22 QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP---DQADEKLKSIPKAEKRPVDYEELLSYAH 91 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhccccccccccCCCCHHHHHHHHH
Confidence 455666666666666666666666666666666666666666 1111122222223334445556677774
No 376
>PRK02793 phi X174 lysis protein; Provisional
Probab=26.35 E-value=4.4e+02 Score=23.35 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 475 LILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 475 ~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
.+|.++..+++-....++.++..+-.....++.+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333334333333333333333333
No 377
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.22 E-value=1.1e+03 Score=27.79 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=4.0
Q ss_pred hhhhHHHHHhH
Q 004160 637 LDAKEKELKKL 647 (771)
Q Consensus 637 ~~~~~~el~~~ 647 (771)
|..+|++..++
T Consensus 390 ~kk~Ek~i~k~ 400 (438)
T COG4487 390 WKKREKEIEKL 400 (438)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 378
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.90 E-value=3.9e+02 Score=30.86 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHHhhcccc
Q 004160 691 EAATSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 691 ~aat~~l~kl~~~s~~~l~~~~~ 713 (771)
+-|...+..+.++...++..-.+
T Consensus 292 e~s~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 292 EDSYAELEELTANAEEILQKLEL 314 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 44666788888888888876544
No 379
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.61 E-value=1.2e+03 Score=27.72 Aligned_cols=117 Identities=22% Similarity=0.166 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 412 NELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491 (771)
Q Consensus 412 ~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrL 491 (771)
+.+..+..+++....+....++=+..++..-... ....+..++..+....+++-+.+..+..+-.+++..|.+.+.+-
T Consensus 143 ~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~ 220 (447)
T KOG2751|consen 143 VLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKA 220 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444433222222 44555556666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 492 EELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQ 530 (771)
Q Consensus 492 eeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q 530 (771)
..+.++-...-+......-+.-+.+..+.-++-++.-.+
T Consensus 221 ~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~ 259 (447)
T KOG2751|consen 221 ERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQ 259 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Confidence 665555555555444444444444445544444443333
No 380
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=25.55 E-value=7.5e+02 Score=29.24 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 004160 694 TSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 694 t~~l~kl~~~s~~~l~~~~~ 713 (771)
...++++.++=.+-++++.+
T Consensus 384 WprF~~i~d~nieSlk~~~~ 403 (508)
T PF04129_consen 384 WPRFQKIMDANIESLKKADP 403 (508)
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 44567777777777777664
No 381
>PF15456 Uds1: Up-regulated During Septation
Probab=25.47 E-value=6.5e+02 Score=24.66 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQNLK 467 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiEqLK 467 (771)
.++..+...++....++..+..+...++
T Consensus 81 eel~~~~rk~ee~~~eL~~le~R~~~~~ 108 (124)
T PF15456_consen 81 EELAESDRKCEELAQELWKLENRLAEVR 108 (124)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333
No 382
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.29 E-value=6.3e+02 Score=24.46 Aligned_cols=79 Identities=22% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 353 KQLVELEEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQ 432 (771)
Q Consensus 353 ~q~~el~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQ 432 (771)
.+|++|-..-..+.+|..++-. |+.=....-.+...+..+.+..+..+.++..++.++...-..+..+......+.
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~----~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~ 82 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQ----VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKE 82 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888888888765 223333333444455555555555555555555555544444444444444444
Q ss_pred HHH
Q 004160 433 EEL 435 (771)
Q Consensus 433 eEL 435 (771)
.+.
T Consensus 83 ~~~ 85 (150)
T PF07200_consen 83 QQQ 85 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 383
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.84 E-value=2.6e+02 Score=24.13 Aligned_cols=14 Identities=14% Similarity=0.321 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 004160 407 VEELQNELNKEKYS 420 (771)
Q Consensus 407 IeeLr~qLqkekqe 420 (771)
+..+...+...+.+
T Consensus 9 ~~~~~~~i~tvk~e 22 (55)
T PF05377_consen 9 LPRIESSINTVKKE 22 (55)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 384
>PRK04325 hypothetical protein; Provisional
Probab=24.70 E-value=4.9e+02 Score=23.16 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 004160 477 LEEKDFELSNARQMLEELNN 496 (771)
Q Consensus 477 LEEIdeELeeiqrrLeeLr~ 496 (771)
|.++..+++-....++.++.
T Consensus 11 i~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 385
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=1.3e+02 Score=37.85 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 445 TENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE 524 (771)
Q Consensus 445 lekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE 524 (771)
+...+...+..+...+.+....-.-+.++...+..+...+....+.+..+..+++.+..+...+.+.+......++.+..
T Consensus 461 ~~~~~s~s~~~~~~~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~~~ve~l~~ 540 (847)
T KOG0998|consen 461 LDAQKSQSKEKFSTTRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIESQVENLQK 540 (847)
T ss_pred hhhhhhHHHhhhhhhhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhhhhhhhhHh
Confidence 33333333333333333333333334444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhhhhhhhhHHHH
Q 004160 525 HVLILQNELDGTKLKVSEA 543 (771)
Q Consensus 525 ~L~~~q~ELNe~nIe~sQq 543 (771)
.|.....+...+.......
T Consensus 541 ~L~~~~~~~~~~~s~~~~l 559 (847)
T KOG0998|consen 541 ELLDLIYEMADTRSKSTLL 559 (847)
T ss_pred HHHHHHHHHHhhcccchhh
Confidence 4444444444444444443
No 386
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.39 E-value=1.6e+03 Score=28.95 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=23.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 372 l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
.-+|+......+-..|..+-+++-+=++ -.....+..++.+++.++.++-..
T Consensus 298 dsn~~EtlnTl~ya~Rak~iknk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 298 DSNAQETLNTLRYADRAKQIKNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred hhhhhhHHHHHHHhhHHHHhcccccccc-cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555444444333 233333444444444444444333
No 387
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.19 E-value=1e+03 Score=26.41 Aligned_cols=7 Identities=14% Similarity=0.600 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 004160 320 KKLLSDV 326 (771)
Q Consensus 320 ~~ll~~v 326 (771)
+.++..|
T Consensus 76 r~~~~~v 82 (362)
T TIGR01010 76 RDMLAAL 82 (362)
T ss_pred HHHHHHH
Confidence 3333333
No 388
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=24.18 E-value=24 Score=34.30 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhh
Q 004160 477 LEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ---AMDTLQEKDEHVLILQNELDGTKL 538 (771)
Q Consensus 477 LEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE---leeeLkEkEE~L~~~q~ELNe~nI 538 (771)
+..+...+......+..+......|-..+..++..... +...+..+.+.|.++.+.-|..++
T Consensus 47 ~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~IkV 111 (138)
T PF06009_consen 47 ISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRIKV 111 (138)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhheee
Confidence 33333333334444444444333444444444333333 444455555555444444444433
No 389
>PRK12705 hypothetical protein; Provisional
Probab=24.15 E-value=1.3e+03 Score=27.73 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHhHHH
Q 004160 239 VKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEKRTMEWLLSQDALKKLAEEASRRMEETNDTLEDFRR 318 (771)
Q Consensus 239 ~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~~~~~wl~~q~elk~l~~~a~k~~~~~~~~~~df~r 318 (771)
+.++|..+......+..+.+.|+.-..--.-.+.+|..-+.+|+++ -++-..+|..-|.=..++.++
T Consensus 79 ~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~------~~~~~~~Le~ia~lt~~eak~------- 145 (508)
T PRK12705 79 LQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL------EKQLDNELYRVAGLTPEQARK------- 145 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHH-------
Confidence 3333333333333344444444433333333444455555555555 333334444444444444433
Q ss_pred HHHHHHHHHHHHh
Q 004160 319 VKKLLSDVRSELV 331 (771)
Q Consensus 319 v~~ll~~vr~el~ 331 (771)
-|+..|+.++.
T Consensus 146 --~l~~~~~~~~~ 156 (508)
T PRK12705 146 --LLLKLLDAELE 156 (508)
T ss_pred --HHHHHHHHHHH
Confidence 35555555543
No 390
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.70 E-value=8.3e+02 Score=25.26 Aligned_cols=8 Identities=38% Similarity=0.463 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 004160 324 SDVRSELV 331 (771)
Q Consensus 324 ~~vr~el~ 331 (771)
+.+=.|||
T Consensus 65 ~~~F~ELI 72 (189)
T PF10211_consen 65 SQCFDELI 72 (189)
T ss_pred HHHHHHHH
Confidence 33333443
No 391
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.75 E-value=1.4e+03 Score=27.76 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 359 EEQKKSLTSYMTSLKDAQVEVESERVKLRVTEARNKELERDL 400 (771)
Q Consensus 359 ~~q~~~~~s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqL 400 (771)
..||.++-.|-.....+...++.-..-.+.++.+...++.+-
T Consensus 139 ~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~ 180 (557)
T COG0497 139 ELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQEKE 180 (557)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888877665555224444444444444444333333
No 392
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.71 E-value=9.2e+02 Score=25.44 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 464 QNLKSKQASLQLILEEKDFELSNARQMLEEL 494 (771)
Q Consensus 464 EqLKsEIesLq~ELEEIdeELeeiqrrLeeL 494 (771)
++++.++..+..+.....++|..+..-...+
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4444444444444444444444444443333
No 393
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=22.71 E-value=1.3e+03 Score=27.28 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
.++...+...+.+.++..+.+..++..+.-+...+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai 46 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAI 46 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555443333
No 394
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=22.68 E-value=7e+02 Score=24.04 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 456 LVEAKLEIQNLKSKQASLQLILEEKDFELSNA 487 (771)
Q Consensus 456 LeeLq~eiEqLKsEIesLq~ELEEIdeELeei 487 (771)
..........+...+......++.+..+|..+
T Consensus 76 ~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~a 107 (139)
T PF05615_consen 76 RENYEQLNEEIEQEIEQAKKEIEELKEELEEA 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 395
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.65 E-value=1.2e+02 Score=28.72 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Q 004160 465 NLKSKQASLQLILEEKDFEL-SNARQMLEELN 495 (771)
Q Consensus 465 qLKsEIesLq~ELEEIdeEL-eeiqrrLeeLr 495 (771)
.+.+....+..+++++...| .+++..+...+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555444 33444444333
No 396
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=22.44 E-value=1e+02 Score=31.89 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhHHhhhh
Q 004160 606 RENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKLEETVE 652 (771)
Q Consensus 606 ReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~~~~~~ 652 (771)
-+.-+++.++|++.+.++..|=+|+|.+ .|.+++..+||-|+++
T Consensus 46 ~G~T~eLkNeLREVREELkEKmeEIKQI---KdiMDKDFDKL~EFVE 89 (205)
T PF15079_consen 46 TGGTQELKNELREVREELKEKMEEIKQI---KDIMDKDFDKLHEFVE 89 (205)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHH
Confidence 3456777888888888888888888877 4566677778766664
No 397
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.34 E-value=1.4e+03 Score=27.36 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 004160 544 ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~ 561 (771)
..|...|-..++.|..++
T Consensus 393 DdVD~kIleak~al~evt 410 (575)
T KOG4403|consen 393 DDVDHKILEAKSALSEVT 410 (575)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 566666666666666554
No 398
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.25 E-value=5.3e+02 Score=22.47 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVS 429 (771)
Q Consensus 393 ~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIe 429 (771)
+..++.++-.+...+..++.....+++.+.++..++.
T Consensus 8 l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 8 LNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 399
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=21.90 E-value=1.6e+03 Score=28.04 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhcccch
Q 004160 611 MKEMEVLAAKRALTVKD 627 (771)
Q Consensus 611 EkE~eLrelrRaL~~kd 627 (771)
.+.+.+..+.++-..||
T Consensus 278 ~lk~a~eslm~ane~kd 294 (861)
T KOG1899|consen 278 TLKNALESLMRANEQKD 294 (861)
T ss_pred HHHHHHHHHHhhchhhh
Confidence 44444444444443333
No 400
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.86 E-value=1.5e+03 Score=27.63 Aligned_cols=87 Identities=14% Similarity=0.287 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSE 542 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQ 542 (771)
++.+.+++..+......+...+..+-.-.+.+..++..|. +.+.-+.++...+.....++...-..|+..|-+...
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~----~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~ 374 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLD----NSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK 374 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333333333333332 223334445555555555555555555555554444
Q ss_pred H--HHHHHHHHHH
Q 004160 543 A--ETVVEQIVDL 553 (771)
Q Consensus 543 q--Etl~eRIeeL 553 (771)
. ..+...+..+
T Consensus 375 ~L~~~v~~eL~~L 387 (557)
T COG0497 375 ELEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHHhc
Confidence 3 3444444443
No 401
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=21.69 E-value=7.6e+02 Score=30.14 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=3.6
Q ss_pred HHHHHHhhh
Q 004160 629 ELKTVLGRL 637 (771)
Q Consensus 629 elk~~~~~~ 637 (771)
|++..+..|
T Consensus 247 e~~~~~~~~ 255 (701)
T PF09763_consen 247 EIRDFFEAL 255 (701)
T ss_pred HHHHHHHHH
Confidence 344444333
No 402
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.69 E-value=6e+02 Score=30.68 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 491 LEELNNEVRELKMIMSSREEQLVQAMDTL 519 (771)
Q Consensus 491 LeeLr~ELkELKslIesLEgqLeEleeeL 519 (771)
+..+..++..++..++.+...-.++.+.+
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 403
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.31 E-value=5.4e+02 Score=22.21 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 381 SERVKLRVTEARNKELERDLSMEKELVEEL 410 (771)
Q Consensus 381 ~~~~~l~~aqsE~kELErqLlqlekeIeeL 410 (771)
.....++.++..+.+...-+.+++-++..+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444555555555554444444444443
No 404
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=20.99 E-value=1.1e+03 Score=25.67 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHH-HHHHHH
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVE-AKLEIQ 464 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELee-Lq~eiE 464 (771)
|..+-.....+...+++..+.+...+.++...+...+....+...+..........+.......+.....+.. +.....
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHH
Q 004160 465 NLKSKQASLQLILEEKDFEL--SNARQMLEELNNEVRELK 502 (771)
Q Consensus 465 qLKsEIesLq~ELEEIdeEL--eeiqrrLeeLr~ELkELK 502 (771)
.+..+.+.+-........++ .+.......++.++..|+
T Consensus 258 ~~~~e~e~~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 258 QLLQEQERLLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 405
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=20.97 E-value=6.1e+02 Score=22.74 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 443 GETENLLRVKESDLVEAKLEIQNLKSKQA 471 (771)
Q Consensus 443 qElekeIeelEnELeeLq~eiEqLKsEIe 471 (771)
++.+..|+.+..+=.+|+-++--+.+.+.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 406
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=20.83 E-value=7.9e+02 Score=23.95 Aligned_cols=61 Identities=25% Similarity=0.253 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 347 QEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE-VESERVKLRVTEARNKELERDLSMEKELV 407 (771)
Q Consensus 347 q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e-~~~~~~~l~~aqsE~kELErqLlqlekeI 407 (771)
+++.|.+.-+||-.||..++--|++-..-+.. -.+...-...+..+|+.|-++|-.+++.+
T Consensus 7 ~Ei~Ls~kheEIlsqR~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksL 68 (109)
T PF15134_consen 7 QEIQLSKKHEEILSQREMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSL 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999885443322 22223345667788888777776666654
No 407
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.63 E-value=3.8e+02 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHhhccccccccCC
Q 004160 693 ATSALQKLTEMSGELLNKASLSIETDT 719 (771)
Q Consensus 693 at~~l~kl~~~s~~~l~~~~~~~~~d~ 719 (771)
+.+|..+|++.--.+-..-.+.||.|+
T Consensus 369 ~s~aa~~LadyYik~Aeq~~PVIEi~a 395 (475)
T PRK13729 369 ASKAAQTLSDYYIKRAEQYHPVIPIGA 395 (475)
T ss_pred hhHHHHHHHHHHHHHHHHhCCeEEeCC
Confidence 344555555555555555555555554
No 408
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.63 E-value=1.3e+03 Score=26.25 Aligned_cols=14 Identities=21% Similarity=0.499 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 004160 544 ETVVEQIVDLTHKL 557 (771)
Q Consensus 544 Etl~eRIeeLt~eL 557 (771)
..+..-+..+..++
T Consensus 371 ~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 371 ETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 409
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.49 E-value=2.3e+02 Score=26.32 Aligned_cols=54 Identities=30% Similarity=0.345 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccchHHHHHHHhhhhhhHHHHHhH
Q 004160 594 QTKQLEIELKFARENLRMKEMEVLAAK---RALTVKDEELKTVLGRLDAKEKELKKL 647 (771)
Q Consensus 594 el~eLEqEleelReeLrEkE~eLrelr---RaL~~kd~elk~~~~~~~~~~~el~~~ 647 (771)
++..+|..+...+..+..++..|+... .+......|+..++++++..|++|+.|
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 444555555555555666665554321 123334489999999999999999999
No 410
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.33 E-value=1.3e+03 Score=26.22 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDF-ELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIde-ELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
|..++.++..+...+.+.++.-.+ .+..+...+..+..+.......++.+...-.++++.|....+.|
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~l 179 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEAL 179 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444444443221 23444444444444444444444444444455555555444444
No 411
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=4.8e+02 Score=29.93 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhH
Q 004160 407 VEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESD 455 (771)
Q Consensus 407 IeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnE 455 (771)
++.+...+..++.+-+.+...+..|..+...++.+...+...+..+...
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3333333333444433333333333333333333333333333333333
Done!