Query 004160
Match_columns 771
No_of_seqs 80 out of 82
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.2 7.7E-07 2.6E-11 86.1 41.5 111 367-477 38-148 (284)
2 1c1g_A Tropomyosin; contractIl 99.1 6.6E-06 2.3E-10 79.6 42.7 96 444-539 171-266 (284)
3 1i84_S Smooth muscle myosin he 98.9 2.3E-08 7.9E-13 121.5 16.8 121 372-492 894-1014(1184)
4 1i84_S Smooth muscle myosin he 98.6 7.5E-08 2.6E-12 117.0 11.2 18 544-561 1147-1164(1184)
5 2v71_A Nuclear distribution pr 96.9 0.31 1.1E-05 48.8 23.6 30 435-464 51-80 (189)
6 3vkg_A Dynein heavy chain, cyt 96.6 0.67 2.3E-05 62.3 30.7 97 380-476 2010-2106(3245)
7 2v71_A Nuclear distribution pr 96.1 1.2 4.1E-05 44.6 22.3 12 384-395 31-42 (189)
8 3vkg_A Dynein heavy chain, cyt 95.9 2.1 7.3E-05 57.7 29.1 63 576-638 2309-2374(3245)
9 2dfs_A Myosin-5A; myosin-V, in 95.8 1.5 5.2E-05 53.6 25.7 27 398-424 921-947 (1080)
10 2efr_A General control protein 95.6 1.8 6.2E-05 42.1 25.1 119 384-502 35-153 (155)
11 2efr_A General control protein 95.3 2.3 7.9E-05 41.3 23.4 122 410-545 26-147 (155)
12 3oja_B Anopheles plasmodium-re 95.0 0.41 1.4E-05 53.2 15.8 19 395-413 467-485 (597)
13 2fxo_A Myosin heavy chain, car 94.6 2.9 0.0001 38.9 19.8 30 452-481 67-96 (129)
14 3u1c_A Tropomyosin alpha-1 cha 94.4 1.8 6.1E-05 38.9 15.6 92 404-509 8-99 (101)
15 3oja_B Anopheles plasmodium-re 94.2 0.71 2.4E-05 51.3 15.6 7 395-401 474-480 (597)
16 2dfs_A Myosin-5A; myosin-V, in 94.2 14 0.00049 45.2 38.8 10 281-290 822-831 (1080)
17 3o0z_A RHO-associated protein 94.0 5.1 0.00017 39.5 22.3 17 345-361 5-21 (168)
18 3u1c_A Tropomyosin alpha-1 cha 93.8 2.7 9.2E-05 37.8 15.5 25 418-442 36-60 (101)
19 3u59_A Tropomyosin beta chain; 93.4 2.9 9.9E-05 37.4 15.1 58 452-509 42-99 (101)
20 2ocy_A RAB guanine nucleotide 92.9 7.4 0.00025 37.8 21.3 138 385-533 7-145 (154)
21 3u59_A Tropomyosin beta chain; 92.7 4.6 0.00016 36.1 15.3 89 403-491 7-95 (101)
22 3ol1_A Vimentin; structural ge 90.4 7.5 0.00026 35.8 14.5 14 501-514 88-101 (119)
23 1ic2_A Tropomyosin alpha chain 90.3 4.2 0.00015 35.0 12.0 71 459-529 4-74 (81)
24 3hnw_A Uncharacterized protein 90.0 2.6 9E-05 40.0 11.4 68 454-521 68-135 (138)
25 2b9c_A Striated-muscle alpha t 89.1 3.6 0.00012 39.5 11.7 86 435-520 26-111 (147)
26 3oja_A Leucine-rich immune mol 88.7 9.7 0.00033 41.4 16.3 51 442-492 423-473 (487)
27 3tnu_A Keratin, type I cytoske 88.1 6.5 0.00022 36.6 12.4 54 371-424 18-71 (131)
28 3tnu_B Keratin, type II cytosk 87.9 7.1 0.00024 36.2 12.5 54 371-424 16-69 (129)
29 3hnw_A Uncharacterized protein 86.5 6 0.0002 37.6 11.3 6 361-366 56-61 (138)
30 3ol1_A Vimentin; structural ge 85.9 21 0.00072 32.8 16.0 36 404-439 19-54 (119)
31 1ic2_A Tropomyosin alpha chain 85.8 11 0.00037 32.4 11.7 24 404-427 5-28 (81)
32 2b9c_A Striated-muscle alpha t 85.5 7.4 0.00025 37.3 11.5 32 370-401 10-41 (147)
33 3oja_A Leucine-rich immune mol 85.1 22 0.00075 38.7 16.6 34 491-524 444-477 (487)
34 3cvf_A Homer-3, homer protein 84.3 2.3 7.9E-05 37.2 6.7 69 583-651 3-72 (79)
35 3q8t_A Beclin-1; autophagy, AT 82.8 26 0.00088 31.3 15.2 44 428-471 20-63 (96)
36 2ocy_A RAB guanine nucleotide 82.8 37 0.0012 33.0 18.4 106 390-508 43-148 (154)
37 2jee_A YIIU; FTSZ, septum, coi 79.1 29 0.001 30.5 11.7 61 418-478 12-72 (81)
38 3ghg_A Fibrinogen alpha chain; 78.6 12 0.00043 42.5 11.6 43 409-451 114-156 (562)
39 2e7s_A RAB guanine nucleotide 78.4 3.7 0.00012 39.2 6.3 53 463-515 62-115 (135)
40 3mq9_A Bone marrow stromal ant 78.2 48 0.0016 35.8 16.0 73 426-501 397-469 (471)
41 3ghg_A Fibrinogen alpha chain; 77.8 20 0.00068 40.9 12.9 11 362-372 80-90 (562)
42 4gkw_A Spindle assembly abnorm 77.4 52 0.0018 31.5 19.5 148 400-554 13-160 (167)
43 2eqb_B RAB guanine nucleotide 77.2 42 0.0014 30.4 14.2 39 446-484 25-63 (97)
44 2eqb_B RAB guanine nucleotide 76.9 43 0.0015 30.3 15.0 88 385-478 6-93 (97)
45 2zqm_A Prefoldin beta subunit 76.8 21 0.00073 31.6 10.7 69 548-620 37-111 (117)
46 3cve_A Homer protein homolog 1 74.6 12 0.00039 32.3 7.8 61 590-650 4-65 (72)
47 1fxk_A Prefoldin; archaeal pro 74.3 19 0.00065 31.5 9.6 65 549-617 33-103 (107)
48 3mq7_A Bone marrow stromal ant 71.9 66 0.0022 30.1 14.0 45 425-469 24-68 (121)
49 3mq7_A Bone marrow stromal ant 71.8 66 0.0023 30.1 12.7 36 385-420 33-68 (121)
50 4h22_A Leucine-rich repeat fli 71.6 46 0.0016 30.4 11.4 80 435-521 4-83 (103)
51 3swk_A Vimentin; cytoskeleton, 70.9 46 0.0016 29.1 11.0 44 463-506 16-59 (86)
52 2v4h_A NF-kappa-B essential mo 70.0 69 0.0024 29.6 12.8 25 395-419 28-52 (110)
53 1m1j_C Fibrinogen gamma chain; 69.9 59 0.002 35.9 14.1 88 335-422 27-122 (409)
54 1x79_B RAB GTPase binding effe 66.2 84 0.0029 29.1 13.4 40 396-435 36-75 (112)
55 3i00_A HIP-I, huntingtin-inter 65.4 59 0.002 30.2 11.1 19 463-481 42-60 (120)
56 2e7s_A RAB guanine nucleotide 64.3 25 0.00085 33.6 8.5 50 390-439 31-80 (135)
57 4gkw_A Spindle assembly abnorm 64.1 1E+02 0.0035 29.5 21.2 29 390-418 17-45 (167)
58 3s4r_A Vimentin; alpha-helix, 63.8 79 0.0027 28.0 11.2 38 480-517 54-91 (93)
59 2v4h_A NF-kappa-B essential mo 63.3 95 0.0032 28.7 11.9 31 407-437 26-56 (110)
60 2oto_A M protein; helical coil 62.3 1.1E+02 0.0036 29.0 20.1 6 547-552 144-149 (155)
61 3nmd_A CGMP dependent protein 59.6 21 0.00071 30.8 6.4 50 369-418 18-67 (72)
62 3c9i_A Tail needle protein GP2 59.1 1.5E+02 0.0051 30.3 13.4 79 390-468 69-147 (242)
63 3qh9_A Liprin-beta-2; coiled-c 58.6 84 0.0029 27.6 10.1 18 482-499 54-71 (81)
64 4h22_A Leucine-rich repeat fli 58.3 85 0.0029 28.7 10.4 65 398-462 9-73 (103)
65 3qh9_A Liprin-beta-2; coiled-c 58.0 74 0.0025 28.0 9.6 56 380-435 22-77 (81)
66 2no2_A HIP-I, huntingtin-inter 56.3 1.2E+02 0.004 27.6 14.7 20 388-407 19-38 (107)
67 3a7p_A Autophagy protein 16; c 52.1 1.7E+02 0.0058 28.4 12.1 33 427-459 76-108 (152)
68 2v66_B Nuclear distribution pr 52.0 1.5E+02 0.005 27.4 16.9 67 392-461 4-70 (111)
69 3a7p_A Autophagy protein 16; c 51.3 1.8E+02 0.0062 28.2 13.5 56 401-456 71-126 (152)
70 3c9i_A Tail needle protein GP2 51.2 1.1E+02 0.0038 31.2 11.0 69 386-454 79-147 (242)
71 4emc_A Monopolin complex subun 50.1 69 0.0024 32.1 9.3 63 466-528 11-73 (190)
72 3cve_A Homer protein homolog 1 49.9 1.2E+02 0.0042 26.0 10.5 54 382-435 5-58 (72)
73 1deq_A Fibrinogen (alpha chain 49.0 2.8E+02 0.0096 30.5 14.5 18 403-420 65-82 (390)
74 3vp9_A General transcriptional 48.5 28 0.00097 31.2 5.7 49 318-366 11-60 (92)
75 2xdj_A Uncharacterized protein 47.7 1.3E+02 0.0045 26.2 9.7 42 491-532 22-63 (83)
76 4dnd_A Syntaxin-10, SYN10; str 47.5 75 0.0026 29.7 8.7 64 99-162 65-128 (130)
77 3hhm_B NISH2 P85alpha; PI3KCA, 46.2 2.9E+02 0.0099 30.0 14.3 56 406-461 199-254 (373)
78 1deq_A Fibrinogen (alpha chain 46.1 3.4E+02 0.012 29.9 17.1 19 508-526 139-157 (390)
79 1cii_A Colicin IA; bacteriocin 46.1 3.8E+02 0.013 30.5 18.8 63 430-492 353-415 (602)
80 2i1j_A Moesin; FERM, coiled-co 45.7 25 0.00084 40.2 6.1 60 393-459 337-396 (575)
81 3i00_A HIP-I, huntingtin-inter 44.4 2E+02 0.0068 26.7 11.2 10 524-533 106-115 (120)
82 3nmd_A CGMP dependent protein 43.7 37 0.0013 29.2 5.4 44 595-638 21-64 (72)
83 3jsv_C NF-kappa-B essential mo 43.5 1.7E+02 0.0059 26.4 9.9 22 398-419 9-30 (94)
84 2q6q_A Spindle POLE BODY compo 42.4 1.4E+02 0.0046 25.7 8.5 55 486-540 7-61 (74)
85 3efg_A Protein SLYX homolog; x 41.6 69 0.0024 27.6 6.9 51 459-509 12-62 (78)
86 3jsv_C NF-kappa-B essential mo 41.5 2E+02 0.0068 25.9 10.0 29 409-437 6-34 (94)
87 2no2_A HIP-I, huntingtin-inter 41.2 2.1E+02 0.007 26.0 16.5 15 398-412 8-22 (107)
88 2xdj_A Uncharacterized protein 40.9 1.8E+02 0.0063 25.3 10.3 31 457-487 23-53 (83)
89 2i1j_A Moesin; FERM, coiled-co 40.6 26 0.0009 40.0 5.3 15 545-559 515-529 (575)
90 1x8y_A Lamin A/C; structural p 40.0 1.7E+02 0.0057 25.4 9.2 52 469-520 29-80 (86)
91 2k48_A Nucleoprotein; viral pr 39.7 96 0.0033 28.5 7.7 65 497-561 36-102 (107)
92 1fxk_C Protein (prefoldin); ar 39.3 1.5E+02 0.0053 26.8 9.4 44 576-621 87-130 (133)
93 4emc_A Monopolin complex subun 37.9 1.8E+02 0.0063 29.1 10.1 38 440-477 20-57 (190)
94 2oto_A M protein; helical coil 35.5 2.9E+02 0.0098 26.0 20.4 30 391-420 29-58 (155)
95 3hhm_B NISH2 P85alpha; PI3KCA, 35.3 4.6E+02 0.016 28.4 17.7 40 459-498 210-249 (373)
96 1cii_A Colicin IA; bacteriocin 33.8 5.8E+02 0.02 29.0 17.5 49 468-520 398-446 (602)
97 3mov_A Lamin-B1; LMNB1, B-type 31.5 1.3E+02 0.0045 26.8 7.2 29 431-459 42-70 (95)
98 2ic6_A Nucleocapsid protein; h 31.3 1.6E+02 0.0053 25.8 7.4 64 498-561 7-72 (78)
99 4etp_A Kinesin-like protein KA 31.3 1.2E+02 0.004 33.1 8.4 40 496-535 17-56 (403)
100 1gmj_A ATPase inhibitor; coile 31.1 2.4E+02 0.008 25.0 8.6 27 398-424 51-77 (84)
101 2ic9_A Nucleocapsid protein; h 29.9 1.6E+02 0.0054 26.7 7.4 64 498-561 7-72 (96)
102 4fi5_A Nucleoprotein; structur 29.7 1.5E+02 0.0051 27.5 7.4 64 498-561 24-89 (113)
103 3uux_B Mitochondrial division 28.5 4.5E+02 0.015 27.2 11.5 62 464-525 159-220 (242)
104 1m1j_A Fibrinogen alpha subuni 27.9 7E+02 0.024 28.2 15.5 25 503-527 132-156 (491)
105 1jcd_A Major outer membrane li 27.6 2.4E+02 0.0083 22.7 7.7 37 455-491 12-48 (52)
106 1wle_A Seryl-tRNA synthetase; 26.5 3.8E+02 0.013 30.2 11.6 24 691-714 345-368 (501)
107 1x79_B RAB GTPase binding effe 26.4 3.9E+02 0.013 24.7 13.6 27 484-510 79-105 (112)
108 2zdi_C Prefoldin subunit alpha 25.8 50 0.0017 31.0 3.7 113 504-623 3-142 (151)
109 3tul_A Cell invasion protein S 25.6 4.7E+02 0.016 25.4 11.7 102 413-521 21-125 (158)
110 2lw1_A ABC transporter ATP-bin 25.6 3.2E+02 0.011 23.5 9.1 19 459-477 27-45 (89)
111 3efg_A Protein SLYX homolog; x 25.3 1.5E+02 0.0051 25.5 6.3 59 582-640 3-61 (78)
112 3l4q_C Phosphatidylinositol 3- 23.7 5.3E+02 0.018 25.3 16.6 48 459-506 101-148 (170)
113 3s84_A Apolipoprotein A-IV; fo 23.6 6.2E+02 0.021 26.1 27.1 36 596-634 212-247 (273)
114 3ajw_A Flagellar FLIJ protein; 23.1 4.1E+02 0.014 23.9 16.1 28 471-498 77-104 (150)
115 2ke4_A CDC42-interacting prote 22.1 4.2E+02 0.014 23.7 8.8 37 398-434 15-51 (98)
116 2dq0_A Seryl-tRNA synthetase; 21.6 3.3E+02 0.011 30.1 9.8 21 693-713 316-336 (455)
117 1ik9_A DNA repair protein XRCC 21.3 6.3E+02 0.022 25.3 11.9 40 395-434 136-175 (213)
118 3qne_A Seryl-tRNA synthetase, 21.2 3.9E+02 0.013 30.1 10.3 22 692-713 311-332 (485)
119 4etp_A Kinesin-like protein KA 20.7 2.3E+02 0.0078 30.9 8.1 36 491-526 5-40 (403)
120 2b5u_A Colicin E3; high resolu 20.5 1E+03 0.034 27.3 20.4 50 234-283 399-448 (551)
121 2w83_C C-JUN-amino-terminal ki 20.1 4.4E+02 0.015 23.0 9.8 37 458-494 34-70 (77)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.22 E-value=7.7e-07 Score=86.14 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=49.9
Q ss_pred HHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHH
Q 004160 367 SYMTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETE 446 (771)
Q Consensus 367 s~~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqEle 446 (771)
.+...+..++.++..-...+..+......+...+..+...+..+...+.....++..+..++..+..++..+...+..+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (284)
T 1c1g_A 38 QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE 117 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555555555555555544444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 447 NLLRVKESDLVEAKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 447 keIeelEnELeeLq~eiEqLKsEIesLq~EL 477 (771)
..+......+..+...+..+...+..+...+
T Consensus 118 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (284)
T 1c1g_A 118 KAADESERGMKVIESRAQKDEEKMEIQEIQL 148 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4444333333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.12 E-value=6.6e-06 Score=79.59 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004160 444 ETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKD 523 (771)
Q Consensus 444 ElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkE 523 (771)
.+...+....+.+..+...+..+...+..+...+..+...+......+..+...+..+...+..++..+..+...+....
T Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (284)
T 1c1g_A 171 IIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333334444444444444444444444444444
Q ss_pred HHHHHHHHhhhhhhhh
Q 004160 524 EHVLILQNELDGTKLK 539 (771)
Q Consensus 524 E~L~~~q~ELNe~nIe 539 (771)
..+..+...+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~ 266 (284)
T 1c1g_A 251 KSIDDLEDELYAQKLK 266 (284)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.86 E-value=2.3e-08 Score=121.49 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=27.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Q 004160 372 LKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRV 451 (771)
Q Consensus 372 l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIee 451 (771)
+.+++.+++.++..+..+..++..+..++..++.++..+..++...+..+..+...+..+..++..+..++.++...+..
T Consensus 894 ~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~ 973 (1184)
T 1i84_S 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973 (1184)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555555544444444444444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 452 KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE 492 (771)
Q Consensus 452 lEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe 492 (771)
++.++..+..++..++.++...+..+..+..++......+.
T Consensus 974 l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~ 1014 (1184)
T 1i84_S 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014 (1184)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.62 E-value=7.5e-08 Score=117.04 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 004160 544 ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 544 Etl~eRIeeLt~eLe~s~ 561 (771)
..+..++.++..+|..+.
T Consensus 1147 ~~L~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S 1147 RDLSEELEALKTELEDTL 1164 (1184)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666544
No 5
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.88 E-value=0.31 Score=48.77 Aligned_cols=30 Identities=7% Similarity=-0.008 Sum_probs=11.5
Q ss_pred HhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 435 LGRKNTEFGETENLLRVKESDLVEAKLEIQ 464 (771)
Q Consensus 435 LqelekELqElekeIeelEnELeeLq~eiE 464 (771)
+...++....+...+..+..++..++.+..
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~ 80 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLE 80 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.64 E-value=0.67 Score=62.32 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHH
Q 004160 380 ESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEA 459 (771)
Q Consensus 380 ~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeL 459 (771)
+=++.+|..++.+....+.++...+.++..++..+..++..++....+...++.+.......+.-..+.|.-+-.|....
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 66778888888888888888888888888888888999999988888888898888888888888888888899998888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004160 460 KLEIQNLKSKQASLQLI 476 (771)
Q Consensus 460 q~eiEqLKsEIesLq~E 476 (771)
...+..++.++..+-..
T Consensus 2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 88888888877766544
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.13 E-value=1.2 Score=44.57 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 004160 384 VKLRVTEARNKE 395 (771)
Q Consensus 384 ~~l~~aqsE~kE 395 (771)
..|+.++...++
T Consensus 31 ~El~EFqesSrE 42 (189)
T 2v71_A 31 DELVEFQEGSRE 42 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.85 E-value=2.1 Score=57.69 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=47.8
Q ss_pred hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccc-hHHHHHHHhhhh
Q 004160 576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL--TVK-DEELKTVLGRLD 638 (771)
Q Consensus 576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL--~~k-d~elk~~~~~~~ 638 (771)
+.+|+..-+..++.+++++.+.|-......+..|.++|+.|...=..- ++. |++|=.+|...-
T Consensus 2309 edQLL~~vv~~ErPeLE~~r~~Li~~~~~~k~~L~~LEd~lL~~Ls~s~GniLdd~~LI~~L~~sK 2374 (3245)
T 3vkg_A 2309 QSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNILDDDSVISTLETLK 2374 (3245)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHHHHHTTTHHHHHHHHTTSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence 677777778888999999999999999999999999999987654321 233 456666665543
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.80 E-value=1.5 Score=53.62 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
....+++++|..|+..++..+.+...+
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L 947 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSL 947 (1080)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444443333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.62 E-value=1.8 Score=42.07 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHH
Q 004160 384 VKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEI 463 (771)
Q Consensus 384 ~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~ei 463 (771)
..+..+...+.+|+..+-...+-+-.+...=.+..++-+.+..+|..|...+...+......+..+..++..+..+..++
T Consensus 35 ERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 35 ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666666666666666666665555566666665555555555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 464 QNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELK 502 (771)
Q Consensus 464 EqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELK 502 (771)
..-+.....+...+...-..|..+......+.+++..|+
T Consensus 115 ~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 115 YAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 555555555555555555555555555555555544443
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.31 E-value=2.3 Score=41.34 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 410 LQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQ 489 (771)
Q Consensus 410 Lr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqr 489 (771)
+...+.+...+.+.....+..|..++.. .-+.+.++...-+....+-..++..|..+..++..+..
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~--------------v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKT--------------VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444433 22333344444555555555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 004160 490 MLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAET 545 (771)
Q Consensus 490 rLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEt 545 (771)
+-....-.+..|...++.+++.+......+......++..-.+|+.+...|-.++.
T Consensus 92 RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~ 147 (155)
T 2efr_A 92 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 66666667777888888888888888888888888888777777777666655543
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.95 E-value=0.41 Score=53.24 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 395 ELERDLSMEKELVEELQNE 413 (771)
Q Consensus 395 ELErqLlqlekeIeeLr~q 413 (771)
.++..+.+.+..+...+..
T Consensus 467 ~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 467 QLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.58 E-value=2.9 Score=38.88 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 452 KESDLVEAKLEIQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 452 lEnELeeLq~eiEqLKsEIesLq~ELEEId 481 (771)
....+..+......+...+..+..++++..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el~~rleeee 96 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333344444444444444333
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.38 E-value=1.8 Score=38.94 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFE 483 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeE 483 (771)
.++|..++...++...+.+.+..++........+ .+.++.+|+.++..+...+..++..+......
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~--------------~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ--------------LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444443333333333 34444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 484 LSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIesLE 509 (771)
+............++..|+..++.++
T Consensus 74 Lee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 74 LLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444444455555555555443
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.25 E-value=0.71 Score=51.32 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 004160 395 ELERDLS 401 (771)
Q Consensus 395 ELErqLl 401 (771)
..+..+.
T Consensus 474 ~~~~~l~ 480 (597)
T 3oja_B 474 QQEQLLQ 480 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.19 E-value=14 Score=45.24 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=5.2
Q ss_pred HhhhHHHHHH
Q 004160 281 LEKRTMEWLL 290 (771)
Q Consensus 281 le~~~~~wl~ 290 (771)
+-+...+|+.
T Consensus 822 IQs~~Rg~~~ 831 (1080)
T 2dfs_A 822 IQKFQRMYVV 831 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhHHH
Confidence 4444556654
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.03 E-value=5.1 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004160 345 EEQEHLLGKQLVELEEQ 361 (771)
Q Consensus 345 e~q~~~l~~q~~el~~q 361 (771)
.+.-..|++|+.|+.+.
T Consensus 5 neKi~~LekQL~E~n~k 21 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDL 21 (168)
T ss_dssp -----CTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34456677777776553
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.76 E-value=2.7 Score=37.79 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhH
Q 004160 418 KYSLQQAIDEVSSLQEELGRKNTEF 442 (771)
Q Consensus 418 kqeLEelqeEIesLQeELqelekEL 442 (771)
+.+......++.+|+..++.++.++
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 19
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.44 E-value=2.9 Score=37.40 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 452 KESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 452 lEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
.+.++.+++.++..+...+..++..+......+............++..|+..|..++
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444444444444444555555555555555555555555555555555443
No 20
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.88 E-value=7.4 Score=37.85 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQ 464 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiE 464 (771)
||=.+=.....|+..+..+...+...+..+..++.. +.++..+..++......+..+...+..-.....
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~-----------r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~ 75 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQL-----------KEDYNTLKRELSDRDDEVKRLREDIAKENELRT 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH-----------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666555544443322 222333333444455555555555555555566
Q ss_pred HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004160 465 NLKSKQASLQLILEEKDFELS-NARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNEL 533 (771)
Q Consensus 465 qLKsEIesLq~ELEEIdeELe-eiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~EL 533 (771)
........+..+++++...|. +++..+...+-+-..++.....++.++.+...-+.-...++..++..+
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777766664 345556655555555555555555555555555555555555444433
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.71 E-value=4.6 Score=36.06 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004160 403 EKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDF 482 (771)
Q Consensus 403 lekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIde 482 (771)
+.+++..++...++...+.+.+..++.........+..++..+.+.+..++.++..+...+......+............
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHH
Q 004160 483 ELSNARQML 491 (771)
Q Consensus 483 ELeeiqrrL 491 (771)
+...++++|
T Consensus 87 evasLnRri 95 (101)
T 3u59_A 87 EVASLNRRI 95 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=90.37 E-value=7.5 Score=35.82 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=5.2
Q ss_pred HHHHHHhHHHHHHH
Q 004160 501 LKMIMSSREEQLVQ 514 (771)
Q Consensus 501 LKslIesLEgqLeE 514 (771)
|...++++.+.+.-
T Consensus 88 LE~~iesL~eEl~F 101 (119)
T 3ol1_A 88 LERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.29 E-value=4.2 Score=34.97 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLIL 529 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~ 529 (771)
++.++..++....+...+.+....++.....+...+..++..|+..+..+++.+..+.+.+......|...
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666777777777776666666666666655544
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.02 E-value=2.6 Score=40.01 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 454 SDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQE 521 (771)
Q Consensus 454 nELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkE 521 (771)
.++..++.....+...+.....++..+..++...+-+++.+..++..++..+..+++.+..+++.++.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666666666666666666666666666666666666666666666655543
No 25
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.07 E-value=3.6 Score=39.47 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=42.7
Q ss_pred HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160 435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ 514 (771)
Q Consensus 435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE 514 (771)
+....+...+.......+++.-..-..++..+..++......-++-+.++....+++.-+...+..........+..+.+
T Consensus 26 Leeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~e 105 (147)
T 2b9c_A 26 LEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAE 105 (147)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555555555555555555555555555555555555554444444444444444443333
Q ss_pred HHHHHH
Q 004160 515 AMDTLQ 520 (771)
Q Consensus 515 leeeLk 520 (771)
+...|.
T Consensus 106 LEeeL~ 111 (147)
T 2b9c_A 106 LEEELK 111 (147)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.67 E-value=9.7 Score=41.45 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 442 FGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE 492 (771)
Q Consensus 442 LqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe 492 (771)
..+.+...+..+......+.++++++.+-+.++..+++++..+..+...+.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 333444444444444444555555555555555555555444444444433
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.06 E-value=6.5 Score=36.57 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=18.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 371 SLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 371 ~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
-+.+.+..+..-...|+..+.++.++.+.+..++-+|..+.+....++..+...
T Consensus 18 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~ 71 (131)
T 3tnu_A 18 KTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEET 71 (131)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444445555555666666666666666666666666666655555554443
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.86 E-value=7.1 Score=36.17 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 371 SLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 371 ~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
-+.+.+..+..-...|+..+.++.++.+.+..++-+|..+..+...++..+...
T Consensus 16 K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 16 KYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444555566666666666666666666666666655555554443
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.46 E-value=6 Score=37.56 Aligned_cols=6 Identities=0% Similarity=-0.042 Sum_probs=2.5
Q ss_pred HHHHHH
Q 004160 361 QKKSLT 366 (771)
Q Consensus 361 q~~~~~ 366 (771)
.|..||
T Consensus 56 ~r~aVL 61 (138)
T 3hnw_A 56 ELRTDM 61 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 30
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.91 E-value=21 Score=32.80 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160 404 KELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN 439 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeEIesLQeELqele 439 (771)
+..|..|+.+++.....--.+.-++.+++.....+.
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.79 E-value=11 Score=32.41 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 404 KELVEELQNELNKEKYSLQQAIDE 427 (771)
Q Consensus 404 ekeIeeLr~qLqkekqeLEelqeE 427 (771)
.+++..++...+....+++....+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~ 28 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEAD 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333333
No 32
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=85.47 E-value=7.4 Score=37.32 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=16.8
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 370 TSLKDAQVEVESERVKLRVTEARNKELERDLS 401 (771)
Q Consensus 370 ~~l~~a~~e~~~~~~~l~~aqsE~kELErqLl 401 (771)
..|..|+.....-..+|..+.+...+.++-.-
T Consensus 10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k 41 (147)
T 2b9c_A 10 EELDRAQERLATALQKLEEAEKAADESERGMK 41 (147)
T ss_dssp -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666655555555444433
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.13 E-value=22 Score=38.66 Aligned_cols=34 Identities=29% Similarity=0.206 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 491 LEELNNEVRELKMIMSSREEQLVQAMDTLQEKDE 524 (771)
Q Consensus 491 LeeLr~ELkELKslIesLEgqLeEleeeLkEkEE 524 (771)
+..++.+-..++..+..+...+.++...|++.-.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3333344444444555555555555555544433
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=84.28 E-value=2.3 Score=37.20 Aligned_cols=69 Identities=19% Similarity=0.147 Sum_probs=56.9
Q ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH-Hhhh
Q 004160 583 GLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EETV 651 (771)
Q Consensus 583 eLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~-~~~~ 651 (771)
.|...++.+...++.++..-..++..++.++.+|.+.+-.......||+-+++.||.|=-||..| +.+.
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLa 72 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLA 72 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999988888877 5543
No 35
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.85 E-value=26 Score=31.29 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004160 428 VSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQA 471 (771)
Q Consensus 428 IesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIe 471 (771)
-..+-.+|..++++-..+...|..++.+...+......+-....
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn 63 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYS 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 36
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.80 E-value=37 Score=33.03 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
+.++..+...+.....++..|...+................+..|+..+...+++ .-+..+......
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~~------- 109 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADARKE------- 109 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH-------
Confidence 3344444444455555555555555555555555555555555555544433332 222233333222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 470 QASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSR 508 (771)
Q Consensus 470 IesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesL 508 (771)
...++.+...+..++.+....++.++.++..||..+..+
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333333444444444445555555555555554443
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.09 E-value=29 Score=30.50 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 418 KYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILE 478 (771)
Q Consensus 418 kqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELE 478 (771)
+...++...-|..|+-++.+++.+-..+....+...+....+..+.++++.+...-+.++.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444443333333333333333333333344444444444444333333
No 38
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.59 E-value=12 Score=42.48 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHH
Q 004160 409 ELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRV 451 (771)
Q Consensus 409 eLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIee 451 (771)
+|+..+.-++..+++....|..|+..|..+..+++.++..|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555544444444444443
No 39
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.36 E-value=3.7 Score=39.21 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELS-NARQMLEELNNEVRELKMIMSSREEQLVQA 515 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELe-eiqrrLeeLr~ELkELKslIesLEgqLeEl 515 (771)
.....+....+..+++++...|. +++..+...+.+-..++.....++.++.+.
T Consensus 62 R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~ 115 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREK 115 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443 233344444333333333333333333333
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.23 E-value=48 Score=35.85 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004160 426 DEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVREL 501 (771)
Q Consensus 426 eEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkEL 501 (771)
+-..-++++|...++.+.+++..-..-+..+..|+..++ .++..-+.+|+++..++...+.+|.....+++.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD---AEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666777777777777777777777777755443 3333334455555555555555555555555444
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.79 E-value=20 Score=40.87 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=4.3
Q ss_pred HHHHHHHHhhh
Q 004160 362 KKSLTSYMTSL 372 (771)
Q Consensus 362 ~~~~~s~~~~l 372 (771)
++.+.+|++++
T Consensus 80 sKdseqy~k~~ 90 (562)
T 3ghg_A 80 NKDSHSLTTNI 90 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 33344444333
No 42
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=77.37 E-value=52 Score=31.49 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 400 LSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEE 479 (771)
Q Consensus 400 LlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEE 479 (771)
+.+++..+..+..++..++.+|+-.-+-+..=+....++.+.-.--++.|..++.++..++...+...+.+......
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~q--- 89 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQ--- 89 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHH---
Confidence 34555556666666666655555444432222222222222222223344444444444444444433333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 004160 480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEAETVVEQIVDLT 554 (771)
Q Consensus 480 IdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQqEtl~eRIeeLt 554 (771)
+.+-+---+++.++..-+++--++++++-+-+.-+...+....=....-.+-|..++++- +.+.++++.+.
T Consensus 90 -QnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvEN---E~vkerl~mYR 160 (167)
T 4gkw_A 90 -QNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMEN---ENLKEKIAHYR 160 (167)
T ss_dssp -HHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHT
T ss_pred -HhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HhHHHHHHHHH
Confidence 111222245566666666666666666666666666666554444444444444433322 45566665544
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.21 E-value=42 Score=30.39 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004160 446 ENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFEL 484 (771)
Q Consensus 446 ekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeEL 484 (771)
...+..+...+..-........+....+..+++++...|
T Consensus 25 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 25 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.92 E-value=43 Score=30.33 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQ 464 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiE 464 (771)
.+..++.++..++.++.....++..|...+................+..++..+...+++ .-+..+........
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe------EAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD------EANNMVADARKEKY 79 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 345566666666666666777777777777777666666666666666666655444332 33334444443333
Q ss_pred HHHHHHHHHHHHHH
Q 004160 465 NLKSKQASLQLILE 478 (771)
Q Consensus 465 qLKsEIesLq~ELE 478 (771)
.++.+...++..|.
T Consensus 80 ~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 80 AIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 44444444444333
No 45
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=76.76 E-value=21 Score=31.56 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhccCcccCcCCcchHH------hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 548 EQIVDLTHKLVISNKNDESSTSMPTDDM------GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAK 620 (771)
Q Consensus 548 eRIeeLt~eLe~s~~~~~~dI~qlkdEI------eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelr 620 (771)
.....-..+|..+. +|..|+..--.+ +... ..|...++.+...+..++..+..+...+.++...|.++.
T Consensus 37 ~e~~~~~~eL~~l~--~d~~vy~~iG~vfv~~~~~ea~--~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 37 TEAKKALDEIESLP--DDAVVYKTVGTLIVKTTKDKAV--AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHTSC--TTCCEEEEETTEEEEECHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCcHhHHHhhHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555444 344455444322 5555 666666677777777777777777777766666666543
No 46
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=74.62 E-value=12 Score=32.33 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhhHHHHHhH-Hhh
Q 004160 590 NFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAKEKELKKL-EET 650 (771)
Q Consensus 590 eLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~~~el~~~-~~~ 650 (771)
++...++.++.+-..+...++.++.+|.+-+-.......||+.+++.||.|=-||..| +.+
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999988888777 544
No 47
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.31 E-value=19 Score=31.46 Aligned_cols=65 Identities=11% Similarity=0.172 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhccCcccCcCCcchHH------hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 549 QIVDLTHKLVISNKNDESSTSMPTDDM------GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVL 617 (771)
Q Consensus 549 RIeeLt~eLe~s~~~~~~dI~qlkdEI------eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLr 617 (771)
....-..+|..+. +|..|+..--.+ +... ..|....+.+...+..++..+..+...+.++...|.
T Consensus 33 e~~~~~~EL~~l~--~d~~vy~~iG~vfv~~~~~e~~--~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 33 ETQKALEELSRAA--DDAEVYKSSGNILIRVAKDELT--EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHSC--TTCCEEEEETTEEEEECHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCchHHHHHhHHHHhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555444 344455444322 4444 555555555555555555555555555555555443
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.92 E-value=66 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 425 IDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSK 469 (771)
Q Consensus 425 qeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsE 469 (771)
.+-.-.|+.+|.+...-+...+..-.+-+..+..|...++..+..
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666777767777777777776655555444
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.81 E-value=66 Score=30.11 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 385 KLRVTEARNKELERDLSMEKELVEELQNELNKEKYS 420 (771)
Q Consensus 385 ~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqe 420 (771)
+|..+++-+...+-+-..++.-+..|...+.+.+..
T Consensus 33 qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq 68 (121)
T 3mq7_A 33 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 68 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555666666666666655555544
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.57 E-value=46 Score=30.44 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=43.7
Q ss_pred HhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004160 435 LGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQ 514 (771)
Q Consensus 435 LqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeE 514 (771)
+.+++..++...-....+-|+...+.-.+.-|+..++..+.. +...++...++..++.-++.....+...+..
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~-------~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~ 76 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQ-------LAESRRQYEEKNKEFEREKHAHSILQFQFAE 76 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666777777766666666555444444 4444444555555555555555555555555
Q ss_pred HHHHHHH
Q 004160 515 AMDTLQE 521 (771)
Q Consensus 515 leeeLkE 521 (771)
+...+++
T Consensus 77 lk~~L~q 83 (103)
T 4h22_A 77 VKEALKQ 83 (103)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555554
No 51
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.88 E-value=46 Score=29.07 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 463 IQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMS 506 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIe 506 (771)
--.+..++.+++..++.++.++.........+.+++..|+.-++
T Consensus 16 ~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 16 KARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33333344444444444444444444444444444444444433
No 52
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=69.97 E-value=69 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 395 ELERDLSMEKELVEELQNELNKEKY 419 (771)
Q Consensus 395 ELErqLlqlekeIeeLr~qLqkekq 419 (771)
.|..++..+++-+...+..+++++.
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~ 52 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKE 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444433
No 53
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=69.86 E-value=59 Score=35.90 Aligned_cols=88 Identities=9% Similarity=0.057 Sum_probs=50.8
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 335 KSLASSRKQMEEQEHLLGKQLVELEEQKKSLTSYMTSLKDAQVE--------VESERVKLRVTEARNKELERDLSMEKEL 406 (771)
Q Consensus 335 ~~~~~sr~~~e~q~~~l~~q~~el~~q~~~~~s~~~~l~~a~~e--------~~~~~~~l~~aqsE~kELErqLlqleke 406 (771)
..|.-+.+.+..+-..|+.-|.+++.-...+..|...+++-... ++.-+.+.+....+...++..+...+..
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~ 106 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENT 106 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 34555666667777778888888888888888888888877433 2222334444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHH
Q 004160 407 VEELQNELNKEKYSLQ 422 (771)
Q Consensus 407 IeeLr~qLqkekqeLE 422 (771)
|..|+..+..++..++
T Consensus 107 i~~l~~~~~~~~~~i~ 122 (409)
T 1m1j_C 107 IQQLTDMHIMNSNKIT 122 (409)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 4444444444333333
No 54
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.16 E-value=84 Score=29.11 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 396 LERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEEL 435 (771)
Q Consensus 396 LErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeEL 435 (771)
+..+--...++|..|..+.++.++.|..++..+...+...
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~v 75 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDV 75 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556666666666666666666655555555443
No 55
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=65.37 E-value=59 Score=30.23 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 004160 463 IQNLKSKQASLQLILEEKD 481 (771)
Q Consensus 463 iEqLKsEIesLq~ELEEId 481 (771)
+.+|+..|..++.++.+.+
T Consensus 42 v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 56
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.35 E-value=25 Score=33.56 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKN 439 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqele 439 (771)
+.++..+...+.....++..+...+................+..++..+.
T Consensus 31 ~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 31 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555554443
No 57
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=64.06 E-value=1e+02 Score=29.46 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEK 418 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkek 418 (771)
+.....+++.+-....++.+..+.+..++
T Consensus 17 ~~D~~s~~~eleEnqeEL~iVgkML~EEq 45 (167)
T 4gkw_A 17 KQDTESLQKQLEENQEELEIVGNMLREEQ 45 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333
No 58
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.82 E-value=79 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004160 480 KDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMD 517 (771)
Q Consensus 480 IdeELeeiqrrLeeLr~ELkELKslIesLEgqLeElee 517 (771)
+...|..+++.++.+..+...+...++++.+.+..+..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666666666666666666666666666555544
No 59
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=63.31 E-value=95 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 407 VEELQNELNKEKYSLQQAIDEVSSLQEELGR 437 (771)
Q Consensus 407 IeeLr~qLqkekqeLEelqeEIesLQeELqe 437 (771)
|..|..++...+..|...+.++..++.++..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 60
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=62.26 E-value=1.1e+02 Score=28.98 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.2
Q ss_pred HHHHHH
Q 004160 547 VEQIVD 552 (771)
Q Consensus 547 ~eRIee 552 (771)
...|..
T Consensus 144 ~~k~~~ 149 (155)
T 2oto_A 144 YNRANV 149 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 61
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=59.62 E-value=21 Score=30.81 Aligned_cols=50 Identities=38% Similarity=0.477 Sum_probs=36.4
Q ss_pred HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 369 MTSLKDAQVEVESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEK 418 (771)
Q Consensus 369 ~~~l~~a~~e~~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkek 418 (771)
|-++.+-|.-++-+..+|+.....+.+++..+......|..|+.++++.+
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666677777777888888888887777777777777777777654
No 62
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=59.15 E-value=1.5e+02 Score=30.26 Aligned_cols=79 Identities=11% Similarity=0.261 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 390 EARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKS 468 (771)
Q Consensus 390 qsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKs 468 (771)
+-++.+-.--+...+.+|..++..++..+.++...+..+..+...+...++.+..+...+..+.+.+.....++..++.
T Consensus 69 QVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 69 QVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 4444455555677777888888888888877777777666666666655555555555555555555555444444443
No 63
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=58.60 E-value=84 Score=27.64 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004160 482 FELSNARQMLEELNNEVR 499 (771)
Q Consensus 482 eELeeiqrrLeeLr~ELk 499 (771)
++|...+..+.....++.
T Consensus 54 ~El~~Lq~qLe~kd~ei~ 71 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIE 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 333333333333333333
No 64
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.28 E-value=85 Score=28.74 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLE 462 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~e 462 (771)
+++-+..=-.+.|+|+...+--..+.+...+..+.+.+.++..++.+..+.++........++..
T Consensus 9 EKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~ 73 (103)
T 4h22_A 9 EKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQ 73 (103)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444443344444443333333333333333333333333
No 65
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.96 E-value=74 Score=28.00 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 380 ESERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEEL 435 (771)
Q Consensus 380 ~~~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeEL 435 (771)
++=-.++|.++-++.++++..++.++++..-..++..+++.|+....++..|+.++
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35556777777778888888888888777777777777777777766666666665
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=56.32 E-value=1.2e+02 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004160 388 VTEARNKELERDLSMEKELV 407 (771)
Q Consensus 388 ~aqsE~kELErqLlqlekeI 407 (771)
..+.-..++.+....++.+|
T Consensus 19 ~~~q~~~e~e~~k~eL~~~~ 38 (107)
T 2no2_A 19 MARQAQVDLEREKKELEDSL 38 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=52.08 E-value=1.7e+02 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHH
Q 004160 427 EVSSLQEELGRKNTEFGETENLLRVKESDLVEA 459 (771)
Q Consensus 427 EIesLQeELqelekELqElekeIeelEnELeeL 459 (771)
++..+...+..++.++.+..+.+..+.-++..+
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=52.03 E-value=1.5e+02 Score=27.42 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHH
Q 004160 392 RNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKL 461 (771)
Q Consensus 392 E~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~ 461 (771)
++..|......+..++..++.......+. ....+..|+.++..+......+...|..++..-.++..
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33444444444444444444333322222 12224445555544444444444444444444444443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=51.32 E-value=1.8e+02 Score=28.25 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHH
Q 004160 401 SMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDL 456 (771)
Q Consensus 401 lqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnEL 456 (771)
..++.++..++..+..++.++......+..++.|+..+.-++..++..+..++.+-
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 70
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=51.20 E-value=1.1e+02 Score=31.19 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHh
Q 004160 386 LRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKES 454 (771)
Q Consensus 386 l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEn 454 (771)
|..-..++..++-.+-..+.+|......+..++.++-..++++..|+...+.++..+...+..|..+..
T Consensus 79 L~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 79 LADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 333334444444444444444444444444444444444444444444444444444444444444333
No 71
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.08 E-value=69 Score=32.12 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004160 466 LKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLI 528 (771)
Q Consensus 466 LKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~ 528 (771)
+++++.+....+..+..+...+...++.+..+++-|+.++.+++..+......+....+.+..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i 73 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEV 73 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhH
Confidence 344555555555555555555555666666666666666666666655555555444444433
No 72
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=49.94 E-value=1.2e+02 Score=25.98 Aligned_cols=54 Identities=30% Similarity=0.347 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 382 ERVKLRVTEARNKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEEL 435 (771)
Q Consensus 382 ~~~~l~~aqsE~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeEL 435 (771)
=..+|..+..++.+|+.++..++..++.-+......+.++..+...++..=.++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345677777888887777777777777776666666666665555444433333
No 73
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.99 E-value=2.8e+02 Score=30.55 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004160 403 EKELVEELQNELNKEKYS 420 (771)
Q Consensus 403 lekeIeeLr~qLqkekqe 420 (771)
+++.|+.|++.+..+.+.
T Consensus 65 ~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444333
No 74
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=48.48 E-value=28 Score=31.22 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Q 004160 318 RVKKLLSDVRSELVSSQKSLASSRKQM-EEQEHLLGKQLVELEEQKKSLT 366 (771)
Q Consensus 318 rv~~ll~~vr~el~~s~~~~~~sr~~~-e~q~~~l~~q~~el~~q~~~~~ 366 (771)
||-.|||.||.|.-+--....++|-+- ++=+..+..|++|+.-=|..|.
T Consensus 11 Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvy 60 (92)
T 3vp9_A 11 KLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVY 60 (92)
T ss_dssp ------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999987555556666555 5889999999999988887775
No 75
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.70 E-value=1.3e+02 Score=26.24 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004160 491 LEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNE 532 (771)
Q Consensus 491 LeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~E 532 (771)
+-.+.+.+..++..+..+.|.+++....+....+.-......
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555554444444333333
No 76
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=47.48 E-value=75 Score=29.74 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=55.1
Q ss_pred HHHhHhhHHHHHHHHHhhhhhHHHHHHhhhhhhhhhhHhHHHHHHhHHHHHHHHHhhHHHHHHH
Q 004160 99 LEILESDLQAVLAALKKKEEDLEDAERRVCLEHSELNRAKEELLRREREIDVACSRHEKLEEEL 162 (771)
Q Consensus 99 ~~~l~s~~~~~l~~l~~ke~~l~~ae~~v~~~~~~l~~~k~~l~~re~~i~~a~~~~~~~e~~l 162 (771)
+.-+-.+|..+|..+..-=+||..|=+.|--+..+-+-...++.+|..-|...+.....|+.+|
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667889999999888777777777777778888888888999999999999999999998876
No 77
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=46.19 E-value=2.9e+02 Score=29.96 Aligned_cols=56 Identities=20% Similarity=0.396 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHH
Q 004160 406 LVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKL 461 (771)
Q Consensus 406 eIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~ 461 (771)
++..+..+-..+++++..+......|.+++........++++.++.+.-++..|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 56777888888888888888888888888887777777777777777777766655
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.13 E-value=3.4e+02 Score=29.93 Aligned_cols=19 Identities=0% Similarity=0.155 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 508 REEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 508 LEgqLeEleeeLkEkEE~L 526 (771)
|+..+......++.++-.|
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 79
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=46.11 E-value=3.8e+02 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=28.1
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 430 SLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE 492 (771)
Q Consensus 430 sLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe 492 (771)
.|++.+....+++......++.+++.+.....+..+....+.....+...+...+..+..++.
T Consensus 353 ~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 353 KLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 333334444444444444444444444444444444444444444444444444444444433
No 80
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.70 E-value=25 Score=40.20 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHH
Q 004160 393 NKELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEA 459 (771)
Q Consensus 393 ~kELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeL 459 (771)
..++++++.+.+.+....+..+ ...+.-...|.++....+.+-..+.+.....+.....|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANL-------LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333 33333344444444443333333333333333333333
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=44.35 E-value=2e+02 Score=26.72 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHhh
Q 004160 524 EHVLILQNEL 533 (771)
Q Consensus 524 E~L~~~q~EL 533 (771)
+.|.-++..|
T Consensus 106 erf~KLKe~y 115 (120)
T 3i00_A 106 QRYSKLKEKY 115 (120)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.65 E-value=37 Score=29.24 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhh
Q 004160 595 TKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLD 638 (771)
Q Consensus 595 l~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~ 638 (771)
+.+|+..+....++|+.++..|+.+.+.+..||.++...-..||
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777777777777777777777765544443
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.51 E-value=1.7e+02 Score=26.36 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKY 419 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekq 419 (771)
.++-.+++-+...+..+++++.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke 30 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKE 30 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333334444444444433
No 84
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.41 E-value=1.4e+02 Score=25.71 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 004160 486 NARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKV 540 (771)
Q Consensus 486 eiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~ 540 (771)
++..++...+.|+..|+..+.++-+.+..+++.=+.++.+....+...+.++-..
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 4567788888888999999999999998888888888777777666666555443
No 85
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=41.61 E-value=69 Score=27.62 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSRE 509 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLE 509 (771)
+..++..|+.++.-.+.-|+++..-+..-+..++.+..++..|...+.+++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555566666666666666666666666666555555555555555444
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=41.48 E-value=2e+02 Score=25.94 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004160 409 ELQNELNKEKYSLQQAIDEVSSLQEELGR 437 (771)
Q Consensus 409 eLr~qLqkekqeLEelqeEIesLQeELqe 437 (771)
.|..+++..+..|--.+.+|+.+++++..
T Consensus 6 ~L~~~L~~aEeaL~~kq~~id~lke~~~q 34 (94)
T 3jsv_C 6 DLRQQLQQAEEALVAKQELIDKLKEEAEQ 34 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=41.16 E-value=2.1e+02 Score=26.00 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQN 412 (771)
Q Consensus 398 rqLlqlekeIeeLr~ 412 (771)
++...+.+.+...+.
T Consensus 8 RK~aE~~KqL~~~~q 22 (107)
T 2no2_A 8 RKNAEVTKQVSMARQ 22 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 333444444443333
No 88
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.90 E-value=1.8e+02 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004160 457 VEAKLEIQNLKSKQASLQLILEEKDFELSNA 487 (771)
Q Consensus 457 eeLq~eiEqLKsEIesLq~ELEEIdeELeei 487 (771)
..+...++.++.+|..+...++...-++..+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344444444444444444444433333333
No 89
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=40.57 E-value=26 Score=39.97 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 004160 545 TVVEQIVDLTHKLVI 559 (771)
Q Consensus 545 tl~eRIeeLt~eLe~ 559 (771)
.++.++..++.+|..
T Consensus 515 ~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 515 RLHNQLKALKQDLAR 529 (575)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 90
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.97 E-value=1.7e+02 Score=25.37 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 469 KQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ 520 (771)
Q Consensus 469 EIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk 520 (771)
.+...+..|..+..++..++..+..-..++..|-.-.-.++-.+..+..-|.
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3334444444444455555555555555555555555555555555554444
No 91
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=39.68 E-value=96 Score=28.51 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHhhhc
Q 004160 497 EVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA--ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 497 ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq--Etl~eRIeeLt~eLe~s~ 561 (771)
.+++|...+...|+++.-+.-.|++.+..+..--+++|..-+.-.+. ..+..+|.+++..|....
T Consensus 36 ~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 36 TLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777788888888888888888887777877766666655 678888888888777643
No 92
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.30 E-value=1.5e+02 Score=26.79 Aligned_cols=44 Identities=2% Similarity=0.021 Sum_probs=29.4
Q ss_pred hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 576 GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKR 621 (771)
Q Consensus 576 eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrR 621 (771)
+... .-+.++...+...+..++..+..++..+..+...|+++..
T Consensus 87 ~eA~--~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 87 EDAM--ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555 5566666677777777777777777777777777666553
No 93
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.86 E-value=1.8e+02 Score=29.14 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 440 TEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 440 kELqElekeIeelEnELeeLq~eiEqLKsEIesLq~EL 477 (771)
..+..+..+...+.+++.....+++.++.++.++++..
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333334444444444444444444443333
No 94
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=35.50 E-value=2.9e+02 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 391 ARNKELERDLSMEKELVEELQNELNKEKYS 420 (771)
Q Consensus 391 sE~kELErqLlqlekeIeeLr~qLqkekqe 420 (771)
.++..|....-.+...+..+......+...
T Consensus 29 ~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~ 58 (155)
T 2oto_A 29 HENKDLKARLENAMEVAGRDFKRAEELEKA 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444433333333333333333333
No 95
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=35.28 E-value=4.6e+02 Score=28.36 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEV 498 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~EL 498 (771)
|+.++..+......++..+.......-++.+++..+++++
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 3333333333333333333333333333444444444433
No 96
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=33.80 E-value=5.8e+02 Score=29.05 Aligned_cols=49 Identities=10% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 468 SKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQ 520 (771)
Q Consensus 468 sEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLk 520 (771)
.....+++.+..++.++.+..++.+ +.+.++.-++-.-+|...+.+.|=
T Consensus 398 kek~~~~n~~a~~~~KiAE~KrK~d----E~~aIKDAVkfTAdFykkIsEkyG 446 (602)
T 1cii_A 398 KEKENIRNQLSGINQKIAEEKRKQD----ELKATKDAINFTTEFLKSVSEKYG 446 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555554443 445566666666666666666553
No 97
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.51 E-value=1.3e+02 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=11.4
Q ss_pred HHHHHhHHhhhHHHHHHHHHHHHhHHHHH
Q 004160 431 LQEELGRKNTEFGETENLLRVKESDLVEA 459 (771)
Q Consensus 431 LQeELqelekELqElekeIeelEnELeeL 459 (771)
++..+..++.++..+...+...-.++..|
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444333333333
No 98
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=31.30 E-value=1.6e+02 Score=25.81 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=48.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHhhhc
Q 004160 498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA--ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 498 LkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq--Etl~eRIeeLt~eLe~s~ 561 (771)
+++|...+...|.++.-+.-.|++.+..+..--+++|..-+.-.+. ..+..+|.+++..|....
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888887777777766666555 678888888888777643
No 99
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.29 E-value=1.2e+02 Score=33.14 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004160 496 NEVRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDG 535 (771)
Q Consensus 496 ~ELkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe 535 (771)
.+...++..+..++..+.++.+.+...+.....+-+.+.+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 17 EKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444333333344433
No 100
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.13 E-value=2.4e+02 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQA 424 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEel 424 (771)
..+....++|..++..+.+.++.+..+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444433
No 101
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.85 E-value=1.6e+02 Score=26.70 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHhhhc
Q 004160 498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA--ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 498 LkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq--Etl~eRIeeLt~eLe~s~ 561 (771)
+++|...+...|.++.-+.-.|++.+..+..--+++|..-+.-.+. ..+..+|.+++..|....
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888888778887766666665 688888888888887654
No 102
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=29.70 E-value=1.5e+02 Score=27.52 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHHHHHHHHHHhhhc
Q 004160 498 VRELKMIMSSREEQLVQAMDTLQEKDEHVLILQNELDGTKLKVSEA--ETVVEQIVDLTHKLVISN 561 (771)
Q Consensus 498 LkELKslIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~nIe~sQq--Etl~eRIeeLt~eLe~s~ 561 (771)
+++|...+...|.++.-+.-.|++.+..+..--+++|..-+.-.+. ..+..+|.+++..|....
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888888776666665 788888888888888755
No 103
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.47 E-value=4.5e+02 Score=27.24 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004160 464 QNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEH 525 (771)
Q Consensus 464 EqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~ 525 (771)
+.+-..+..+..+..-+..+|.++-.+|..+..--..+-..+..+|..-.+++..|...+..
T Consensus 159 ~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 159 QTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333333333333333333333333333333333
No 104
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.90 E-value=7e+02 Score=28.20 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 004160 503 MIMSSREEQLVQAMDTLQEKDEHVL 527 (771)
Q Consensus 503 slIesLEgqLeEleeeLkEkEE~L~ 527 (771)
..+..|+..+......++.++.-|.
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566665553
No 105
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.58 E-value=2.4e+02 Score=22.75 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004160 455 DLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQML 491 (771)
Q Consensus 455 ELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrL 491 (771)
.+..|-.++.+|.+.+..+.-.+....++-...+.+|
T Consensus 12 ~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 12 DAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333334444444444444444
No 106
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.50 E-value=3.8e+02 Score=30.21 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHHHHhhccccc
Q 004160 691 EAATSALQKLTEMSGELLNKASLS 714 (771)
Q Consensus 691 ~aat~~l~kl~~~s~~~l~~~~~~ 714 (771)
+.+...+.++.++..+++..-.+.
T Consensus 345 e~s~~~~e~~l~~~~~il~~LgLp 368 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTELGLH 368 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc
Confidence 345567777778888887765554
No 107
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.35 E-value=3.9e+02 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004160 484 LSNARQMLEELNNEVRELKMIMSSREE 510 (771)
Q Consensus 484 LeeiqrrLeeLr~ELkELKslIesLEg 510 (771)
+..+......+..++..|+..-++|-|
T Consensus 79 L~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 79 MAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 333333444444444555555444443
No 108
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.80 E-value=50 Score=30.98 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhHHHHHHHHHHHHHHH-HHHhhhccCcccCcCC---------
Q 004160 504 IMSSREEQLVQAMDTLQEKDEHVLILQNELDGT---KLKVSEAETVVEQIVDLT-HKLVISNKNDESSTSM--------- 570 (771)
Q Consensus 504 lIesLEgqLeEleeeLkEkEE~L~~~q~ELNe~---nIe~sQqEtl~eRIeeLt-~eLe~s~~~~~~dI~q--------- 570 (771)
.+..++..+.++.+.++.+...+..+...++.+ ..++.....+..-|..+. ....... .+..
T Consensus 3 ~m~~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilv-----plg~~~yv~g~i~ 77 (151)
T 2zdi_C 3 RMAQNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILV-----PIGAGSFLKGVIV 77 (151)
T ss_dssp -CCSSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEE-----ECSSSCEEEEECS
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEE-----EcCCCeEEEEEEC
Q ss_pred --------cchHH------hhHhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004160 571 --------PTDDM------GLELMQQGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRAL 623 (771)
Q Consensus 571 --------lkdEI------eeeL~~qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL 623 (771)
+-... +... .-+.++.+.+...+..++..+..++..+..++..|..+....
T Consensus 78 ~~~~V~v~lG~g~~vE~~~~eA~--~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 78 DKNNAIVSVGSGYAVERSIDEAI--SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp CTTEEEEEEETTEEEEEEHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCeEEEecHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.60 E-value=4.7e+02 Score=25.40 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004160 413 ELNKEKYSLQQAIDEVSSLQEELGRKNTEFGETENLLRVKESDLVEAKLEIQNLKSKQASLQLILEEKDFELSNARQMLE 492 (771)
Q Consensus 413 qLqkekqeLEelqeEIesLQeELqelekELqElekeIeelEnELeeLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLe 492 (771)
.+..+.+++......+.+.++--.++..+|...-..-+....-+..... .+.+.+..+..+..++..++.+|+
T Consensus 21 Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~-------n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 21 SLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIK-------KTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666666666666444433333333322222 233333344444444555556666
Q ss_pred HHH---HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004160 493 ELN---NEVRELKMIMSSREEQLVQAMDTLQE 521 (771)
Q Consensus 493 eLr---~ELkELKslIesLEgqLeEleeeLkE 521 (771)
.+. |++..+...++-+-+...+++..+..
T Consensus 94 ~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 94 SLDPADPGYAQAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp TC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 67777777777776666666555443
No 110
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.59 E-value=3.2e+02 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLIL 477 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~EL 477 (771)
+..+|+.+..++..++..+
T Consensus 27 le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 111
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.33 E-value=1.5e+02 Score=25.52 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=45.4
Q ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhhhhh
Q 004160 582 QGLDKGNDNFRLQTKQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVLGRLDAK 640 (771)
Q Consensus 582 qeLekereeLeeel~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~~~~~~~ 640 (771)
..|--.-..++..+..||..+......|.++...+-..++.++..-..|..+.+|+-..
T Consensus 3 ~~~~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 3 EQLSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456778889999999999999999999999999999999888888888887663
No 112
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=23.66 E-value=5.3e+02 Score=25.31 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 459 AKLEIQNLKSKQASLQLILEEKDFELSNARQMLEELNNEVRELKMIMS 506 (771)
Q Consensus 459 Lq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeLr~ELkELKslIe 506 (771)
++.++..+...-..+...+.......-.+.+++.+++|++-.|....+
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444444444444444444444444555555555555544444433
No 113
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=23.62 E-value=6.2e+02 Score=26.10 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q 004160 596 KQLEIELKFARENLRMKEMEVLAAKRALTVKDEELKTVL 634 (771)
Q Consensus 596 ~eLEqEleelReeLrEkE~eLrelrRaL~~kd~elk~~~ 634 (771)
.++.++.+.++..+ +--..++++++..--++|..-|
T Consensus 212 ~~~~qq~e~f~~~~---~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 212 GHLDQQVEEFRRRV---EPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHHHHh
Confidence 44555556665554 4445555666666666666555
No 114
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=23.14 E-value=4.1e+02 Score=23.85 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 471 ASLQLILEEKDFELSNARQMLEELNNEV 498 (771)
Q Consensus 471 esLq~ELEEIdeELeeiqrrLeeLr~EL 498 (771)
..+...|......+......++..+..+
T Consensus 77 ~~L~~~I~~q~~~l~~~~~~~e~~r~~l 104 (150)
T 3ajw_A 77 QTLEKAIEQHRLQLTQWTQKVDLALKSW 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 115
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.06 E-value=4.2e+02 Score=23.67 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 398 RDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 398 rqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
++...+..+|..++.+|.++....+-+..-+..+.+.
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~n 51 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKT 51 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445556666666666666666655555555554444
No 116
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.62 E-value=3.3e+02 Score=30.11 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHhhcccc
Q 004160 693 ATSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 693 at~~l~kl~~~s~~~l~~~~~ 713 (771)
|...+..+.++...++..-.+
T Consensus 316 s~~~~~e~l~~~~~il~~LGL 336 (455)
T 2dq0_A 316 SWEWHEKIIRNAEELFQELEI 336 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 334555566666666654443
No 117
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.30 E-value=6.3e+02 Score=25.31 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004160 395 ELERDLSMEKELVEELQNELNKEKYSLQQAIDEVSSLQEE 434 (771)
Q Consensus 395 ELErqLlqlekeIeeLr~qLqkekqeLEelqeEIesLQeE 434 (771)
.++.+...+..+...++....++...++.+..........
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555566666666655555555
No 118
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.25 E-value=3.9e+02 Score=30.14 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHhhcccc
Q 004160 692 AATSALQKLTEMSGELLNKASL 713 (771)
Q Consensus 692 aat~~l~kl~~~s~~~l~~~~~ 713 (771)
.+...+.++.++...++..-.|
T Consensus 311 ~s~~e~e~ml~~~e~il~~LgL 332 (485)
T 3qne_A 311 KSWEEFDRMIGCSEEFYQSLGL 332 (485)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
Confidence 3566778888888888876544
No 119
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.66 E-value=2.3e+02 Score=30.90 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004160 491 LEELNNEVRELKMIMSSREEQLVQAMDTLQEKDEHV 526 (771)
Q Consensus 491 LeeLr~ELkELKslIesLEgqLeEleeeLkEkEE~L 526 (771)
++++..++..+++....++..+.+++..+++..+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 120
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.47 E-value=1e+03 Score=27.32 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=41.1
Q ss_pred HHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 004160 234 EANEVVKKQETEIQSLRKVIQEKEEELEASVALRKVEEEKLKVVEANLEK 283 (771)
Q Consensus 234 ~an~~~~~qe~~~~~l~~~~~~ke~~~~~~~~~~k~~~ekl~~~e~~le~ 283 (771)
.|++.|+--++-.-.+..++-.--.+|...++.||-.+.|-|-||+.|+.
T Consensus 399 ~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ae~kl~~ 448 (551)
T 2b5u_A 399 RAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLND 448 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhhhhhccch
Confidence 35566666677777777788777788999999999999999999999986
No 121
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.09 E-value=4.4e+02 Score=22.99 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004160 458 EAKLEIQNLKSKQASLQLILEEKDFELSNARQMLEEL 494 (771)
Q Consensus 458 eLq~eiEqLKsEIesLq~ELEEIdeELeeiqrrLeeL 494 (771)
+|..++.++..+...++.++.....-......++.++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444333333333333
Done!