Query 004161
Match_columns 771
No_of_seqs 422 out of 1722
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 5.8E-69 1.3E-73 599.4 32.2 613 51-766 37-668 (668)
2 PF01480 PWI: PWI domain; Int 99.8 7.2E-19 1.6E-23 153.0 5.6 68 693-760 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.7E-17 3.7E-22 143.2 8.2 70 690-759 4-73 (74)
4 KOG2146 Splicing coactivator S 99.7 7E-18 1.5E-22 173.7 3.3 81 686-766 35-119 (354)
5 KOG4661 Hsp27-ERE-TATA-binding 99.5 3.7E-12 7.9E-17 141.3 23.0 81 52-132 403-483 (940)
6 PLN03134 glycine-rich RNA-bind 99.5 5.6E-13 1.2E-17 129.5 13.1 82 52-133 32-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 5.4E-13 1.2E-17 146.2 14.2 82 52-133 267-348 (352)
8 KOG0121 Nuclear cap-binding pr 99.4 3.9E-13 8.5E-18 125.1 7.3 83 51-133 33-115 (153)
9 KOG0113 U1 small nuclear ribon 99.4 6.6E-12 1.4E-16 131.2 13.1 84 50-133 97-180 (335)
10 PF00076 RRM_1: RNA recognitio 99.3 5.3E-12 1.1E-16 105.2 9.5 70 57-127 1-70 (70)
11 TIGR01659 sex-lethal sex-letha 99.3 2.2E-11 4.8E-16 134.2 15.5 83 51-133 104-186 (346)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 6.9E-12 1.5E-16 137.5 11.3 81 53-133 2-82 (352)
13 KOG0122 Translation initiation 99.3 1.7E-11 3.7E-16 125.3 12.9 84 50-133 185-268 (270)
14 KOG0125 Ataxin 2-binding prote 99.2 3.6E-11 7.7E-16 127.1 11.5 81 52-134 94-174 (376)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.7E-10 3.7E-15 132.9 14.6 82 52-133 293-374 (509)
16 TIGR01645 half-pint poly-U bin 99.2 9.5E-11 2.1E-15 136.4 12.3 82 52-133 202-283 (612)
17 KOG0145 RNA-binding protein EL 99.2 1.7E-10 3.6E-15 118.6 11.8 81 52-132 276-356 (360)
18 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.7E-15 98.0 9.1 70 57-127 1-70 (70)
19 TIGR01645 half-pint poly-U bin 99.2 8.3E-11 1.8E-15 136.9 10.2 79 52-130 105-183 (612)
20 PLN03120 nucleic acid binding 99.2 1.3E-10 2.8E-15 121.8 10.5 76 54-133 4-79 (260)
21 KOG0146 RNA-binding protein ET 99.2 2.2E-11 4.9E-16 125.3 4.6 88 44-131 275-362 (371)
22 KOG0149 Predicted RNA-binding 99.2 5.6E-11 1.2E-15 121.1 7.2 81 51-132 9-89 (247)
23 PLN03213 repressor of silencin 99.1 2E-10 4.2E-15 126.3 11.7 89 52-146 8-98 (759)
24 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.5E-15 130.9 8.4 82 55-136 19-100 (435)
25 smart00362 RRM_2 RNA recogniti 99.1 4.8E-10 1E-14 92.0 9.9 71 56-128 1-71 (72)
26 TIGR01622 SF-CC1 splicing fact 99.1 2.9E-10 6.2E-15 129.4 11.6 79 54-132 186-264 (457)
27 TIGR01659 sex-lethal sex-letha 99.1 2.8E-10 6.1E-15 125.5 10.8 80 54-133 193-274 (346)
28 KOG0126 Predicted RNA-binding 99.1 1.2E-11 2.7E-16 121.3 -0.2 81 52-132 33-113 (219)
29 KOG0117 Heterogeneous nuclear 99.1 3.5E-10 7.7E-15 123.7 10.8 89 50-138 79-169 (506)
30 KOG0107 Alternative splicing f 99.1 3E-10 6.6E-15 111.2 8.0 75 54-133 10-84 (195)
31 KOG0145 RNA-binding protein EL 99.0 9.6E-10 2.1E-14 113.1 11.0 88 51-138 38-125 (360)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.3E-09 5E-14 123.4 15.4 78 51-133 272-350 (481)
33 TIGR01628 PABP-1234 polyadenyl 99.0 9.8E-10 2.1E-14 128.6 12.5 84 52-136 283-366 (562)
34 smart00360 RRM RNA recognition 99.0 1.1E-09 2.4E-14 89.4 9.0 70 59-128 1-70 (71)
35 COG0724 RNA-binding proteins ( 99.0 9.1E-10 2E-14 112.4 10.4 80 54-133 115-194 (306)
36 PLN03121 nucleic acid binding 99.0 9.7E-10 2.1E-14 113.7 10.5 76 53-132 4-79 (243)
37 TIGR01628 PABP-1234 polyadenyl 99.0 7.9E-10 1.7E-14 129.4 11.1 77 56-132 2-78 (562)
38 TIGR01648 hnRNP-R-Q heterogene 99.0 8.3E-10 1.8E-14 128.3 10.9 80 52-132 56-136 (578)
39 TIGR01622 SF-CC1 splicing fact 99.0 1.2E-09 2.6E-14 124.3 11.9 81 51-132 86-166 (457)
40 KOG0148 Apoptosis-promoting RN 99.0 6.2E-10 1.3E-14 115.3 7.8 83 52-134 60-142 (321)
41 KOG4207 Predicted splicing fac 99.0 6.1E-10 1.3E-14 111.5 7.3 81 53-133 12-92 (256)
42 KOG0148 Apoptosis-promoting RN 99.0 1.7E-09 3.6E-14 112.2 9.3 78 50-133 160-237 (321)
43 KOG0131 Splicing factor 3b, su 99.0 1.1E-09 2.4E-14 107.9 6.7 81 52-132 7-87 (203)
44 cd00590 RRM RRM (RNA recogniti 99.0 6E-09 1.3E-13 85.9 10.3 74 56-130 1-74 (74)
45 KOG0130 RNA-binding protein RB 98.9 1.5E-09 3.2E-14 102.2 7.0 83 51-133 69-151 (170)
46 KOG0114 Predicted RNA-binding 98.9 9.2E-09 2E-13 93.0 11.6 83 53-138 17-99 (124)
47 KOG0124 Polypyrimidine tract-b 98.9 5.7E-10 1.2E-14 119.0 4.4 77 54-130 113-189 (544)
48 KOG0111 Cyclophilin-type pepti 98.9 5.3E-10 1.1E-14 112.6 3.7 82 53-134 9-90 (298)
49 TIGR01642 U2AF_lg U2 snRNP aux 98.9 8.2E-09 1.8E-13 119.0 12.8 73 50-129 171-255 (509)
50 KOG0144 RNA-binding protein CU 98.9 5.9E-09 1.3E-13 113.8 10.3 88 51-138 31-121 (510)
51 KOG0127 Nucleolar protein fibr 98.8 7.4E-09 1.6E-13 115.6 8.7 85 53-138 116-200 (678)
52 KOG0415 Predicted peptidyl pro 98.8 8.4E-09 1.8E-13 110.1 7.1 86 51-136 236-321 (479)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2.7E-08 5.8E-13 114.7 10.6 75 53-133 1-77 (481)
54 KOG0105 Alternative splicing f 98.8 1.5E-08 3.2E-13 100.1 6.9 80 52-134 4-83 (241)
55 TIGR01648 hnRNP-R-Q heterogene 98.7 3.4E-08 7.3E-13 115.1 10.5 73 53-133 232-306 (578)
56 KOG0127 Nucleolar protein fibr 98.7 4.8E-08 1E-12 109.3 10.9 84 52-135 290-379 (678)
57 smart00361 RRM_1 RNA recogniti 98.7 6.3E-08 1.4E-12 82.5 8.7 61 68-128 2-69 (70)
58 KOG0147 Transcriptional coacti 98.7 1.6E-08 3.5E-13 113.6 6.3 79 54-132 278-356 (549)
59 KOG0109 RNA-binding protein LA 98.7 1.8E-08 4E-13 105.4 6.2 70 55-132 3-72 (346)
60 PF13893 RRM_5: RNA recognitio 98.7 9.4E-08 2E-12 77.5 8.6 56 71-131 1-56 (56)
61 KOG0124 Polypyrimidine tract-b 98.7 2.7E-08 5.8E-13 106.5 6.8 93 39-131 188-287 (544)
62 KOG0144 RNA-binding protein CU 98.6 5.2E-08 1.1E-12 106.5 6.2 83 50-132 420-502 (510)
63 KOG0117 Heterogeneous nuclear 98.6 1.4E-07 3E-12 103.8 7.9 75 52-134 257-331 (506)
64 KOG4208 Nucleolar RNA-binding 98.5 2E-07 4.3E-12 94.0 8.2 84 51-134 46-130 (214)
65 KOG0131 Splicing factor 3b, su 98.5 1.6E-07 3.5E-12 92.9 6.8 83 50-132 92-175 (203)
66 KOG4212 RNA-binding protein hn 98.5 3.1E-07 6.7E-12 100.5 9.1 81 51-132 41-122 (608)
67 KOG1457 RNA binding protein (c 98.5 1.3E-06 2.8E-11 88.9 11.7 83 52-134 32-118 (284)
68 KOG0109 RNA-binding protein LA 98.5 1.5E-07 3.2E-12 98.8 5.0 75 51-133 75-149 (346)
69 KOG1548 Transcription elongati 98.4 1E-06 2.3E-11 94.5 10.1 82 51-133 131-220 (382)
70 KOG0123 Polyadenylate-binding 98.4 6.7E-07 1.4E-11 99.7 8.8 78 53-133 75-152 (369)
71 KOG0146 RNA-binding protein ET 98.3 1E-06 2.2E-11 91.5 7.5 82 53-135 18-102 (371)
72 KOG4206 Spliceosomal protein s 98.3 1.2E-06 2.7E-11 89.5 8.0 85 53-140 8-96 (221)
73 KOG0110 RNA-binding protein (R 98.3 8.4E-07 1.8E-11 102.4 6.7 84 51-134 610-693 (725)
74 KOG0226 RNA-binding proteins [ 98.3 1.5E-06 3.2E-11 90.0 6.5 91 52-142 188-278 (290)
75 KOG0153 Predicted RNA-binding 98.2 2.6E-06 5.5E-11 91.6 8.3 79 49-133 223-302 (377)
76 KOG0132 RNA polymerase II C-te 98.2 2.1E-06 4.5E-11 99.8 7.8 74 54-133 421-494 (894)
77 KOG0151 Predicted splicing reg 98.2 3.3E-06 7.3E-11 97.2 9.1 83 51-133 171-256 (877)
78 KOG0110 RNA-binding protein (R 98.2 3.5E-06 7.5E-11 97.5 8.3 77 55-132 516-596 (725)
79 KOG0116 RasGAP SH3 binding pro 98.2 8E-06 1.7E-10 91.9 10.8 77 52-129 286-362 (419)
80 KOG2416 Acinus (induces apopto 98.1 8.2E-06 1.8E-10 92.6 10.0 78 50-133 440-521 (718)
81 KOG0123 Polyadenylate-binding 98.1 4.7E-06 1E-10 93.0 7.9 74 55-134 2-75 (369)
82 KOG4212 RNA-binding protein hn 98.1 5.1E-06 1.1E-10 91.2 7.6 76 51-131 533-608 (608)
83 KOG0120 Splicing factor U2AF, 98.1 4.1E-06 8.8E-11 95.4 6.3 83 51-133 286-368 (500)
84 KOG0533 RRM motif-containing p 98.1 1.4E-05 3E-10 84.0 9.1 82 51-133 80-161 (243)
85 KOG4205 RNA-binding protein mu 98.0 3.4E-06 7.3E-11 91.7 4.4 80 53-133 5-84 (311)
86 KOG4209 Splicing factor RNPS1, 98.0 9.1E-06 2E-10 85.1 5.7 81 51-132 98-178 (231)
87 KOG2253 U1 snRNP complex, subu 97.9 0.00034 7.4E-09 81.0 16.7 34 529-563 514-547 (668)
88 KOG4205 RNA-binding protein mu 97.9 1.6E-05 3.6E-10 86.4 5.7 80 53-133 96-175 (311)
89 KOG4454 RNA binding protein (R 97.8 1.1E-05 2.3E-10 82.2 2.4 78 53-132 8-85 (267)
90 KOG0106 Alternative splicing f 97.8 2.3E-05 5E-10 80.7 4.4 71 55-133 2-72 (216)
91 KOG4660 Protein Mei2, essentia 97.7 4.2E-05 9.2E-10 86.8 6.0 72 51-127 72-143 (549)
92 PF04059 RRM_2: RNA recognitio 97.5 0.00064 1.4E-08 62.1 9.5 78 55-132 2-85 (97)
93 KOG1190 Polypyrimidine tract-b 97.4 0.0015 3.3E-08 72.0 12.2 76 54-134 297-373 (492)
94 KOG1995 Conserved Zn-finger pr 97.3 0.00064 1.4E-08 74.0 8.6 83 51-133 63-153 (351)
95 KOG1457 RNA binding protein (c 97.3 0.00043 9.4E-09 70.9 6.0 67 51-121 207-273 (284)
96 KOG0147 Transcriptional coacti 97.2 0.00017 3.7E-09 81.8 2.9 85 49-134 174-258 (549)
97 KOG3152 TBP-binding protein, a 96.9 0.00066 1.4E-08 70.9 2.9 86 53-138 73-171 (278)
98 KOG4307 RNA binding protein RB 96.8 0.0073 1.6E-07 70.4 11.2 79 52-130 864-943 (944)
99 KOG4849 mRNA cleavage factor I 96.7 0.0032 7E-08 68.1 7.1 95 51-145 77-174 (498)
100 KOG4676 Splicing factor, argin 96.7 0.00068 1.5E-08 74.2 1.5 66 52-122 149-214 (479)
101 KOG1924 RhoA GTPase effector D 96.7 0.0031 6.7E-08 74.2 6.8 7 61-67 609-615 (1102)
102 PF08777 RRM_3: RNA binding mo 96.6 0.01 2.3E-07 54.9 8.5 86 54-145 1-93 (105)
103 KOG4206 Spliceosomal protein s 96.6 0.01 2.2E-07 61.3 9.1 78 50-132 142-220 (221)
104 KOG4210 Nuclear localization s 96.5 0.0013 2.8E-08 71.3 2.4 80 53-133 183-263 (285)
105 PF11608 Limkain-b1: Limkain b 96.4 0.013 2.7E-07 52.1 7.4 72 55-136 3-79 (90)
106 KOG2314 Translation initiation 96.4 0.011 2.4E-07 67.7 8.6 77 52-129 56-139 (698)
107 KOG4211 Splicing factor hnRNP- 96.2 0.013 2.8E-07 66.3 8.1 76 52-131 8-83 (510)
108 COG5175 MOT2 Transcriptional r 96.2 0.01 2.2E-07 64.1 6.8 88 54-143 114-210 (480)
109 KOG1456 Heterogeneous nuclear 96.2 0.075 1.6E-06 58.4 13.2 78 50-132 283-361 (494)
110 KOG1855 Predicted RNA-binding 96.1 0.0051 1.1E-07 68.4 4.4 80 42-121 219-311 (484)
111 KOG0106 Alternative splicing f 96.0 0.0053 1.2E-07 63.6 3.4 70 51-128 96-165 (216)
112 KOG0129 Predicted RNA-binding 95.9 0.02 4.4E-07 65.2 7.9 64 51-114 367-431 (520)
113 PF08952 DUF1866: Domain of un 95.5 0.064 1.4E-06 52.4 8.3 70 52-130 25-103 (146)
114 KOG1029 Endocytic adaptor prot 95.4 0.42 9.1E-06 57.0 16.1 12 219-230 257-268 (1118)
115 KOG1190 Polypyrimidine tract-b 94.9 0.055 1.2E-06 60.1 6.6 79 51-133 411-490 (492)
116 KOG1548 Transcription elongati 94.8 0.082 1.8E-06 57.7 7.6 79 52-134 263-352 (382)
117 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.16 3.5E-06 46.8 8.1 78 54-133 6-91 (100)
118 KOG4211 Splicing factor hnRNP- 94.5 0.11 2.3E-06 59.2 8.0 75 53-129 102-177 (510)
119 KOG4307 RNA binding protein RB 94.4 0.17 3.7E-06 59.5 9.3 78 51-129 431-509 (944)
120 KOG4676 Splicing factor, argin 94.2 0.082 1.8E-06 58.5 6.1 78 56-133 9-89 (479)
121 KOG0105 Alternative splicing f 94.2 0.22 4.8E-06 50.3 8.5 64 52-122 113-176 (241)
122 KOG0112 Large RNA-binding prot 94.1 0.11 2.3E-06 62.8 7.1 83 50-138 451-535 (975)
123 KOG0129 Predicted RNA-binding 93.6 0.46 9.9E-06 54.6 10.6 65 52-116 257-326 (520)
124 KOG0120 Splicing factor U2AF, 93.4 0.22 4.8E-06 57.6 7.9 64 70-133 425-491 (500)
125 KOG4849 mRNA cleavage factor I 92.9 0.42 9.1E-06 52.3 8.7 73 57-141 348-421 (498)
126 PF14605 Nup35_RRM_2: Nup53/35 92.9 0.24 5.2E-06 40.2 5.4 52 55-113 2-53 (53)
127 KOG0128 RNA-binding protein SA 92.8 0.042 9.2E-07 65.8 1.1 79 54-133 736-814 (881)
128 PTZ00266 NIMA-related protein 92.0 0.87 1.9E-05 57.3 11.0 21 669-689 874-894 (1021)
129 KOG1996 mRNA splicing factor [ 91.6 0.51 1.1E-05 50.7 7.2 64 69-132 301-365 (378)
130 KOG1365 RNA-binding protein Fu 91.5 0.48 1E-05 52.5 7.1 77 54-131 280-359 (508)
131 KOG0128 RNA-binding protein SA 91.4 0.021 4.6E-07 68.2 -3.4 76 53-128 666-741 (881)
132 KOG1029 Endocytic adaptor prot 91.4 7.3 0.00016 47.1 16.8 9 367-375 382-390 (1118)
133 KOG1456 Heterogeneous nuclear 91.1 0.58 1.2E-05 51.8 7.2 73 59-136 127-201 (494)
134 PTZ00266 NIMA-related protein 90.6 2.6 5.6E-05 53.3 13.2 7 111-117 129-135 (1021)
135 KOG0112 Large RNA-binding prot 90.4 0.19 4.2E-06 60.7 3.1 80 51-131 369-448 (975)
136 KOG0115 RNA-binding protein p5 89.8 0.33 7.3E-06 51.3 3.9 62 55-117 32-93 (275)
137 KOG2193 IGF-II mRNA-binding pr 89.3 0.48 1E-05 53.1 4.8 74 55-135 2-77 (584)
138 KOG2068 MOT2 transcription fac 88.2 0.19 4.2E-06 54.9 0.9 87 55-143 78-170 (327)
139 KOG2891 Surface glycoprotein [ 86.9 25 0.00055 37.9 15.4 37 51-87 146-194 (445)
140 KOG4574 RNA-binding protein (c 86.7 1.5 3.2E-05 53.1 7.0 75 54-134 298-374 (1007)
141 KOG4285 Mitotic phosphoprotein 86.4 6.5 0.00014 42.8 10.9 61 57-125 200-260 (350)
142 KOG1365 RNA-binding protein Fu 85.0 1.5 3.1E-05 48.9 5.4 79 54-146 161-243 (508)
143 PF15023 DUF4523: Protein of u 82.5 5.7 0.00012 39.0 7.7 75 50-132 82-160 (166)
144 PF04847 Calcipressin: Calcipr 82.0 3.5 7.6E-05 42.1 6.5 60 68-133 9-70 (184)
145 PF10309 DUF2414: Protein of u 79.1 8.7 0.00019 32.5 6.8 55 54-116 5-62 (62)
146 COG5178 PRP8 U5 snRNP spliceos 78.6 1.8 3.8E-05 53.8 3.5 32 54-85 72-103 (2365)
147 PF03467 Smg4_UPF3: Smg-4/UPF3 77.5 2.8 6E-05 42.5 4.1 82 52-133 5-97 (176)
148 TIGR03687 pupylate_cterm ubiqu 77.4 3.4 7.3E-05 30.2 3.3 24 727-750 4-27 (33)
149 KOG4660 Protein Mei2, essentia 75.9 5.3 0.00011 46.6 6.2 79 54-132 361-471 (549)
150 KOG4210 Nuclear localization s 74.7 2.3 5.1E-05 46.3 2.9 81 52-132 86-166 (285)
151 PF11517 Nab2: Nuclear abundan 73.9 16 0.00036 33.5 7.5 74 691-764 8-83 (107)
152 PF08675 RNA_bind: RNA binding 72.1 9.7 0.00021 34.2 5.5 55 55-118 10-64 (87)
153 KOG2135 Proteins containing th 71.9 2.6 5.6E-05 48.2 2.4 73 55-134 373-446 (526)
154 KOG2202 U2 snRNP splicing fact 71.3 2.6 5.6E-05 44.8 2.2 56 77-133 92-147 (260)
155 PF07576 BRAP2: BRCA1-associat 67.8 42 0.00091 31.5 9.2 65 56-122 15-80 (110)
156 PF03880 DbpA: DbpA RNA bindin 67.2 24 0.00052 30.4 7.0 67 56-131 2-74 (74)
157 KOG4364 Chromatin assembly fac 64.7 1.4E+02 0.0031 36.2 14.4 6 555-560 559-564 (811)
158 KOG1923 Rac1 GTPase effector F 58.6 25 0.00053 42.9 7.1 6 703-708 699-704 (830)
159 KOG2591 c-Mpl binding protein, 55.7 16 0.00035 42.8 4.9 70 52-128 173-246 (684)
160 KOG4246 Predicted DNA-binding 55.0 5.4 0.00012 48.4 1.1 48 96-147 158-205 (1194)
161 KOG3702 Nuclear polyadenylated 52.1 17 0.00036 43.5 4.4 64 692-755 21-84 (681)
162 KOG1925 Rac1 GTPase effector F 46.7 39 0.00084 39.3 6.0 11 556-566 752-762 (817)
163 KOG0804 Cytoplasmic Zn-finger 45.6 62 0.0013 37.3 7.3 67 53-122 73-141 (493)
164 KOG0226 RNA-binding proteins [ 45.1 34 0.00073 36.7 4.9 73 51-124 93-168 (290)
165 PF05639 Pup: Pup-like protein 44.6 7.9 0.00017 33.3 0.2 25 726-750 39-63 (69)
166 PF09707 Cas_Cas2CT1978: CRISP 43.0 37 0.0008 30.6 4.2 48 55-105 26-73 (86)
167 KOG4410 5-formyltetrahydrofola 42.0 1.7E+02 0.0038 31.9 9.6 50 54-108 330-379 (396)
168 PF11767 SET_assoc: Histone ly 40.9 1.4E+02 0.0031 25.5 7.2 55 65-128 11-65 (66)
169 KOG2135 Proteins containing th 39.2 32 0.00069 39.8 3.9 63 693-755 7-73 (526)
170 KOG2318 Uncharacterized conser 38.9 1.2E+02 0.0027 36.0 8.5 76 51-126 171-298 (650)
171 KOG2295 C2H2 Zn-finger protein 38.3 5.2 0.00011 46.7 -2.4 73 54-126 231-303 (648)
172 PF03276 Gag_spuma: Spumavirus 36.5 34 0.00074 40.2 3.6 12 102-113 326-337 (582)
173 cd07354 HN_L-delphilin-R1_like 35.5 72 0.0016 28.4 4.7 48 700-748 9-59 (80)
174 KOG4454 RNA binding protein (R 34.9 9.1 0.0002 40.0 -1.1 76 52-128 78-157 (267)
175 KOG3938 RGS-GAIP interacting p 33.3 38 0.00082 36.5 3.1 57 698-754 263-322 (334)
176 PRK15319 AIDA autotransporter- 31.9 56 0.0012 43.8 4.9 6 74-79 1749-1754(2039)
177 KOG4019 Calcineurin-mediated s 31.4 39 0.00085 34.5 2.7 74 54-133 10-89 (193)
178 PF11600 CAF-1_p150: Chromatin 31.0 4.5E+02 0.0098 27.4 10.7 73 309-381 99-171 (216)
179 PF02607 B12-binding_2: B12 bi 30.9 1.4E+02 0.003 25.4 5.8 51 697-752 3-54 (79)
180 PF13797 Post_transc_reg: Post 29.8 1.2E+02 0.0026 27.3 5.3 57 692-748 6-67 (87)
181 COG5178 PRP8 U5 snRNP spliceos 28.7 49 0.0011 42.1 3.4 17 3-19 5-21 (2365)
182 TIGR01795 CM_mono_cladeE monof 27.8 2.1E+02 0.0047 26.0 6.7 38 730-767 52-91 (94)
183 PRK11558 putative ssRNA endonu 27.5 86 0.0019 28.9 4.0 50 54-106 27-76 (97)
184 PF15473 PCNP: PEST, proteolyt 26.6 24 0.00052 34.7 0.3 19 530-548 88-106 (150)
185 KOG4840 Predicted hydrolases o 25.2 1.2E+02 0.0025 32.4 5.0 85 54-138 37-122 (299)
186 PF11671 Apis_Csd: Complementa 22.9 60 0.0013 31.4 2.2 20 356-376 27-46 (146)
187 COG0724 RNA-binding proteins ( 22.9 1.1E+02 0.0023 30.8 4.3 64 51-114 222-285 (306)
188 KOG2888 Putative RNA binding p 22.0 69 0.0015 35.6 2.7 20 66-85 81-100 (453)
189 KOG3054 Uncharacterized conser 21.5 3E+02 0.0065 29.6 7.1 8 561-568 258-265 (299)
190 KOG4483 Uncharacterized conser 20.9 1.7E+02 0.0037 33.4 5.4 55 54-115 391-446 (528)
191 cd07347 harmonin_N_like N-term 20.1 3.3E+02 0.0071 24.2 6.0 60 696-755 5-64 (78)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-69 Score=599.39 Aligned_cols=613 Identities=31% Similarity=0.474 Sum_probs=367.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-++..+||||||...+....+..++..||.|.+|+++. ||||.|.++....+|++.|+-..++|..|.+++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45578999999999999999999999999999998764 999999999999999999999999999999987
Q ss_pred ehhhHHHHHHHHHhhhhhhhhhhhhccccCCcccccccccccCCCCCCCc---------ccccCCCCCCCCCCCcccccc
Q 004161 131 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVV 201 (771)
Q Consensus 131 a~~~k~~le~~k~kk~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~gd~~~~~~~ev~~~~~~ 201 (771)
+..+-..-+.++. .....+-.|.++.+ ....++..+++++.+++-..+
T Consensus 108 d~q~~~n~~k~~~-----------------------~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s 164 (668)
T KOG2253|consen 108 DEQTIENADKEKS-----------------------IANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAAS 164 (668)
T ss_pred hhhhhcCcccccc-----------------------chhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhh
Confidence 7322111110000 00111111222111 011111112222233333333
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchhhhccccccccccccccccccc
Q 004161 202 TEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKA 281 (771)
Q Consensus 202 ~~ed~~~d~~~~Eki~~~~eer~~~~~~~~~~~~~~~~~~~~~~~e~p~~~rd~~~~~d~~k~~~~~~~~~~~~~~d~~~ 281 (771)
+.....+|.-.++.+.+.+++......++.++.++... .. +++ .+.+..+ .+. .
T Consensus 165 ~~~~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~~~e~-----~~--~s~--~~~s~td-------------s~~--~-- 218 (668)
T KOG2253|consen 165 RRQIAEADDHCLELEKTETESNSALSKEAESKKSPFED-----TK--DSK--RSFSSTD-------------SGS--E-- 218 (668)
T ss_pred hhhhHHHHHHHHHHHHhhcccccccCcccccccCchhh-----hc--hhh--hhhcccC-------------ccc--c--
Confidence 33333344444444444443332211111111100000 00 000 0000000 000 0
Q ss_pred CCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 004161 282 SDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERERE 361 (771)
Q Consensus 282 ~e~er~~~~~~~rsr~r~rr~r~r~r~~er~~ere~~r~~r~rerer~r~~r~~~~~~re~E~~y~er~r~we~RER~r~ 361 (771)
+.++. ..+.++++.++ +.+...+.|...+.+++.+.....+..++.|...++..++|.||+.||+.|+.||+.++
T Consensus 219 -~d~~~-~~s~~~n~~rd---~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~ 293 (668)
T KOG2253|consen 219 -SDSAE-VNSSSLNYCRD---RSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKE 293 (668)
T ss_pred -chhhh-hcccccccchh---hccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHH
Confidence 00000 00111111111 11111111111111111111112244566788888999999999999999999999985
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHhhhcccchhhhhhhhhhHHHHHHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHH
Q 004161 362 KERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAE 435 (771)
Q Consensus 362 ~~r~~ekerere~e------r~r~~e~l~d~dddrdd~rk~~r~~~~~~R~r~r~rE~e~D~~DR~rE~eE~~e~~~~~~ 435 (771)
+.+++|+.+|+++. ++++++|++||||++|+ .+||++++|..|++++.+|+|+|.+||.+|++|++|+|++..
T Consensus 294 Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~ 372 (668)
T KOG2253|consen 294 KEREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHS 372 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 55444444444332 36899999999999997 699999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCc----cchhhhcccCCcccCCCCCCcccccCCCCCCCCCCCCCCCCCCccccccccc
Q 004161 436 EEQLQQQQRDALKLLSDNAVNGSL----AEESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMR 511 (771)
Q Consensus 436 ee~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 511 (771)
++..+.....+...+......... .+...++.........+.+.+++..|+... -.+..+-++ ..+-...
T Consensus 373 ~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~e--ee~~s~r~~----~~~d~~~ 446 (668)
T KOG2253|consen 373 EEEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDE--EEIKSQRDD----YKPDEND 446 (668)
T ss_pred hhcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccch--hhcccchhh----hhhhhhh
Confidence 766443322222222222111111 012222223332333333334433321100 000000000 0000011
Q ss_pred cCCCCccccccCcccCCCCccccCccCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhh
Q 004161 512 QSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRIS 591 (771)
Q Consensus 512 ~~~~~~~~k~~~~~~~~~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (771)
.-..+|...+.+++++++.+...+.+|-.-+...++....+..++||.|+.....+ .|+.++++..++. -+-
T Consensus 447 ~i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~ 518 (668)
T KOG2253|consen 447 HISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLP 518 (668)
T ss_pred hhhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCC
Confidence 23457777888899999888899988886555444566667889999987633222 2222222111111 000
Q ss_pred cccchhhhchHHHHhhhhhccccchhhhccccccccchhhhhhhhhhccccccccccccccCchhhhhhhHHhhhhcCCC
Q 004161 592 NVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 671 (771)
Q Consensus 592 ~t~~kee~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~ 671 (771)
.|+. .+...++|.+-...+ ++++.+.+++..- ..++.+.+ .|.+++++||.+||+
T Consensus 519 ~~~v----------------------~~~~~d~Dk~v~~~k-k~vp~dyd~n~~~-~~~~~~nd-eK~~~~ksLI~tIP~ 573 (668)
T KOG2253|consen 519 ETGV----------------------FREDDDEDKNVHEKK-KLVPLDYDRNQAR-AHSGESND-EKRKRIKSLIETIPT 573 (668)
T ss_pred Cccc----------------------ccccCCcccccchhh-hcccccCChhhcc-cccCCcch-hHHHHHHhhcccCCc
Confidence 1100 001112322222333 7777776664211 11222222 345689999999999
Q ss_pred CchhhhcccccccccchhhHhhhhhhhHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 004161 672 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 751 (771)
Q Consensus 672 ~k~~lf~~~i~w~~~d~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lW 751 (771)
+|++||+|+|+|+.||.-+|+.+|+|||+|||+||||++|++||||||++|..|.+|++||.+|.++||++|++||+|||
T Consensus 574 ~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmW 653 (668)
T KOG2253|consen 574 EKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMW 653 (668)
T ss_pred chHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc
Q 004161 752 RMLIFEIKKVETGLA 766 (771)
Q Consensus 752 r~life~~~~~~gl~ 766 (771)
||||||+.+++.||+
T Consensus 654 RlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 654 RLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHhhhhhccCC
Confidence 999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=7.2e-19 Score=152.97 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHHhhCcchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 004161 693 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 760 (771)
Q Consensus 693 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~~ 760 (771)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++|||.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999877 9999999999999999999999999999988654
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=1.7e-17 Score=143.24 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=66.9
Q ss_pred hHhhhhhhhHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004161 690 ELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 759 (771)
Q Consensus 690 ~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~ 759 (771)
+..++|+|||+++|++|||++|++||+||+++|+.|.+|+.++..|..+++.+|..||.+||++|||++.
T Consensus 4 v~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 4 LKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 3458899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=7e-18 Score=173.69 Aligned_cols=81 Identities=25% Similarity=0.591 Sum_probs=70.6
Q ss_pred cchhhHh-hhhhhhHHHHHHHhhCcchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhh
Q 004161 686 YDKHELH-ERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKMWRMLIFEIKKV 761 (771)
Q Consensus 686 ~d~~~~~-~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-~~a~~fv~~lWr~life~~~~ 761 (771)
||++.|+ +.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|+|||. .+|..||.+||-|||-+.-+.
T Consensus 35 VDmsKvnleVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW~LliS~a~~s 114 (354)
T KOG2146|consen 35 VDMSKVNLEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELWSLLISEASQS 114 (354)
T ss_pred cchhhcchhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHHHHHHhhcccc
Confidence 4444443 67899999999999999999999999999976 6799999999999999 999999999999999866555
Q ss_pred hhccc
Q 004161 762 ETGLA 766 (771)
Q Consensus 762 ~~gl~ 766 (771)
+.||.
T Consensus 115 ~~giP 119 (354)
T KOG2146|consen 115 QYGIP 119 (354)
T ss_pred ccCCc
Confidence 55553
No 5
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.48 E-value=3.7e-12 Score=141.25 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.-..+|||.+|+..+...+|+.||++||.|+..+++++..+...+|||||++.+..+|..||.+||.++|.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999999999999888888999999999999999999999999999999999654
Q ss_pred h
Q 004161 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 3
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.46 E-value=5.6e-13 Score=129.51 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||+|||+.+++.+|+.+|..||.|.++.++.+..+|+++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 53
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.46 E-value=5.4e-13 Score=146.22 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..+.+|||+|||+.+++++|..+|++||.|.+++|+.++.+|.++|||||.|.+.++|..||..|||..|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33568999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 347 ~~ 348 (352)
T TIGR01661 347 TN 348 (352)
T ss_pred cC
Confidence 64
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=3.9e-13 Score=125.06 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-..++|||||||++.++++.|.+||++||.|..+.+-.|+.+-.++|||||+|.+.++|..||+.|+|+.|+.+.|.|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 875
No 9
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=6.6e-12 Score=131.22 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
...+.+||||+-|++.+++..|+..|..||.|..+.||.+..||+++|||||+|.+.-+..+|....+|..|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eehh
Q 004161 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 7653
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=5.3e-12 Score=105.24 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004161 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
|||+|||..+++.+|+.+|+.||.|..+.+..+ .++.+++||||.|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6899999999999999999999999999999999985
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=2.2e-11 Score=134.21 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||+|||+++++.+|+.+|..||.|.+|+|+.+..+|+++|||||+|.+.++|..||..||+..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44578999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.31 E-value=6.9e-12 Score=137.50 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+.++|||+|||+.+++.+|+.+|+.||.|.+++|+.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.7e-11 Score=125.27 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.-...++|-|.|||.++++.+|..||.+||.|.++.++.++.||.++|||||+|.+.+.|.+||..|||+.++.-.|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eehh
Q 004161 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|+.+
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9875
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=3.6e-11 Score=127.13 Aligned_cols=81 Identities=19% Similarity=0.227 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...+.|||.|||+...+.+|+.+|.+||.|.++.|+++ ...++|||||+|+++.+|.+|-..|||..|.|++|.|+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 44688999999999999999999999999999999996 6789999999999999999999999999999999999877
Q ss_pred hhh
Q 004161 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
.+.
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 654
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=1.7e-10 Score=132.87 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||||||..+++.+|..+|..||.|..+.++.+..+|.++|||||+|.+...|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.18 E-value=9.5e-11 Score=136.39 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|+++|||||+|.+.++|..||..||++.|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.7e-10 Score=118.57 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....|||-||.+++.+..|.++|+.||.|..+++++|..+.+++|||||++.+.++|..||..|||+.++++.|.|.|-
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 004161 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 4
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.17 E-value=1.2e-10 Score=98.00 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004161 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
|||+|||++++..+|..+|+.||.|..+.+..++. |.++++|||+|.+.++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999874
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=8.3e-11 Score=136.90 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...++|||||||+.+++++|+.+|..||.|.++.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999974
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1.3e-10 Score=121.78 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
.++|||||||+.+++.+|+.+|+.||.|.++.|+.+. .++|||||+|.+.++|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356899999999999999996 999999999999987653
No 21
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.2e-11 Score=125.29 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=81.1
Q ss_pred CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCC
Q 004161 44 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (771)
Q Consensus 44 ~p~~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~G 123 (771)
.+......+.+|+|||-.||..+++.+|.++|-.||.|.+.++..|+.|..++|||||.|.++.++.+||..|||+.|+.
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEe
Q 004161 124 QELMLKVD 131 (771)
Q Consensus 124 r~L~V~~a 131 (771)
+.|+|.+-
T Consensus 355 KRLKVQLK 362 (371)
T KOG0146|consen 355 KRLKVQLK 362 (371)
T ss_pred hhhhhhhc
Confidence 99998643
No 22
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.6e-11 Score=121.13 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
+...+.||||||++.+..+.|+.+|..||.|....++.|+.+|+++|||||+|.+.++|.+|+. -..-.|+|++-.|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 4456889999999999999999999999999999999999999999999999999999999998 445689999998876
Q ss_pred eh
Q 004161 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 54
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.15 E-value=2e-10 Score=126.31 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~--esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
....+||||||++.+++++|..+|+.||.|.++.|++ .+| +|||||+|.+. .++..||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4467899999999999999999999999999999994 577 99999999987 68999999999999999999997
Q ss_pred EehhhHHHHHHHHHhhh
Q 004161 130 VDQATREYLERYVDKKT 146 (771)
Q Consensus 130 ~a~~~k~~le~~k~kk~ 146 (771)
.+. ..||+..+..++
T Consensus 84 KAK--P~YLeRLkrERe 98 (759)
T PLN03213 84 KAK--EHYLARLKREWE 98 (759)
T ss_pred ecc--HHHHHHHHHHHH
Confidence 664 568877765443
No 24
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=1.2e-10 Score=130.85 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=78.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhh
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~ 134 (771)
+.|||||||+.++++.|..+|+.+|.|.+++++.|+.+|+++|||||+|.+.+.|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 004161 135 RE 136 (771)
Q Consensus 135 k~ 136 (771)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 25
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=4.8e-10 Score=91.97 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+|||+|||..++..+|..+|..||.|..+.+..+. +.+.+||||+|.+...|..|+..|++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988874 888999999999999999999999999999999887
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.11 E-value=2.9e-10 Score=129.41 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=76.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.++|||+|||+.+++.+|+.+|..||.|..+.++.+..+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998889999999999999999999999999999999999999976
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.10 E-value=2.8e-10 Score=125.53 Aligned_cols=80 Identities=24% Similarity=0.400 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVD 131 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~G--r~L~V~~a 131 (771)
.++|||+|||..+++++|+++|+.||.|..+.|+.+..+|++++||||+|.+.++|..||..||++.|.+ +.|.|.|+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 5789999999999999999999999999999999998899999999999999999999999999999876 68888887
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 64
No 28
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.2e-11 Score=121.26 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
..+.-|||||||+..|+.+|.-+|+.||.|+.+.+++|..||+++||||+.|++..+..-|+..|||+.|.|+.|+|.-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 44667999999999999999999999999999999999999999999999999999999999999999999999999744
Q ss_pred h
Q 004161 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=3.5e-10 Score=123.67 Aligned_cols=89 Identities=25% Similarity=0.422 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (771)
..+.+|-||||.||.++.+++|.-||.+.|.|..++++.++.+|.++||+||+|++.+.|..||..||+++|. |+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 3356899999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred EEehhh-HHHH
Q 004161 129 KVDQAT-REYL 138 (771)
Q Consensus 129 ~~a~~~-k~~l 138 (771)
.++... +-+|
T Consensus 159 c~Svan~RLFi 169 (506)
T KOG0117|consen 159 CVSVANCRLFI 169 (506)
T ss_pred EEeeecceeEe
Confidence 887643 3344
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3e-10 Score=111.18 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
.+.||||||+..++..+|..+|..||.|.++.|... +.|||||+|+++.+|..|+..|+|..|+|..|.|.+...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 688999999999999999999999999999887664 459999999999999999999999999999999987653
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=9.6e-10 Score=113.09 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=82.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|.|..||.+++.++|+.+|+..|.|.+|++++|+.+|.+.|||||.|.++.+|.+||..|||+.+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44467799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHH
Q 004161 131 DQATREYL 138 (771)
Q Consensus 131 a~~~k~~l 138 (771)
+.+....+
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 99876666
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=2.3e-09 Score=123.42 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.++.++|||+||++ .++++.|..+|+.||.|.+++++.+ .+|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 6999999999999999999999876 25899999999999999999999999999999998
Q ss_pred Eehh
Q 004161 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8754
No 33
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=9.8e-10 Score=128.58 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||+||+..+++..|+.+|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999998 78999999999999999999999999999999999999998
Q ss_pred hhhHH
Q 004161 132 QATRE 136 (771)
Q Consensus 132 ~~~k~ 136 (771)
.....
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86533
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=1.1e-09 Score=89.41 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 59 VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999888778999999999999999999999999999999999887
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.03 E-value=9.1e-10 Score=112.43 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
.++|||||||..+++.+|..+|..||.|..+.+..+..+|.++|||||.|.+.+.+..|+..++|..|+|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999998653
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.03 E-value=9.7e-10 Score=113.74 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.++||||+||++.+++.+|+.+|+.||.|.++.|+.+ +...+||||+|.++.++..||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 99999999999986543
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.03 E-value=7.9e-10 Score=129.36 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=74.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+|||||||+++++.+|..+|+.||.|.+|+++.+..+++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 69999999999999999999999999999999998899999999999999999999999999999999999998865
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=8.3e-10 Score=128.33 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 130 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V~~ 130 (771)
...++|||+|||.++++++|..+|..||.|..++|+.+ .+|+++|||||+|.+.++|..||..||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34689999999999999999999999999999999999 79999999999999999999999999999985 77777765
Q ss_pred eh
Q 004161 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 43
No 39
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.02 E-value=1.2e-09 Score=124.29 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|||+|||..+++.+|+.+|+.||.|..+.++.+..+|+++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999998999999999999999999999997 999999999999976
Q ss_pred eh
Q 004161 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
..
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 54
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.2e-10 Score=115.29 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....||||-|+..++...|++.|.+||.|..+++++|..|+|++|||||.|-+.++|++||..|||..|+++.|+.+|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 004161 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
...
T Consensus 140 TRK 142 (321)
T KOG0148|consen 140 TRK 142 (321)
T ss_pred ccC
Confidence 753
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=6.1e-10 Score=111.46 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..++|.|-||.+.++.+.|+.+|.+||.|..|.|..++.|+.++|||||-|....+|+.|+.+|+|..|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 42
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.7e-09 Score=112.15 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=72.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
..+..|+||||||+..++++.|++.|+.||.|..+++..+. ||+||.|.+.++|..||..+|+.+|+|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 35668999999999999999999999999999999998774 999999999999999999999999999999998
Q ss_pred Eehh
Q 004161 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|...
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 8764
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.95 E-value=1.1e-09 Score=107.93 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
....|||||||+..+++..|.++|-++|+|..+.+..+..+.+.+|||||+|.+.++|.=||.+||.+.|.|+.|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999644
Q ss_pred h
Q 004161 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 4
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=6e-09 Score=85.86 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
+|||+|||..++..+|..+|..||.|..+.+..++ .+.+.++|||.|.+.++|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998874 447889999999999999999999999999999999864
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.5e-09 Score=102.24 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...+..|||.++...+++++|...|.-||.|+.+.+-.|+.||..+||++|+|.+...|..||..|||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
|-.
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 863
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=9.2e-09 Score=93.04 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
....|||.|||+.+|.+++..||++||.|..++|.. +...+|-+||.|++..+|..|+.+|+|+.++++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 367899999999999999999999999999998864 44667999999999999999999999999999999998877
Q ss_pred hhHHHH
Q 004161 133 ATREYL 138 (771)
Q Consensus 133 ~~k~~l 138 (771)
....+.
T Consensus 94 ~~~~~~ 99 (124)
T KOG0114|consen 94 PEDAFK 99 (124)
T ss_pred HHHHHH
Confidence 654443
No 47
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=5.7e-10 Score=118.99 Aligned_cols=77 Identities=29% Similarity=0.446 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|.-|+..|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999975
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.3e-10 Score=112.60 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..+|||||+|...+++..|...|-+||.|..+.+..|-.+++++|||||+|...++|.+||..||+.+|.|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46799999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred hh
Q 004161 133 AT 134 (771)
Q Consensus 133 ~~ 134 (771)
+.
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 64
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=8.2e-09 Score=119.04 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=61.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhc------------CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhC
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVC------------GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~------------G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Ln 117 (771)
.....++|||||||+.+++.+|..+|..| +.|..+.+ ++.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 45567899999999999999999999975 22333332 3457999999999999999995 99
Q ss_pred CceeCCeEEEEE
Q 004161 118 KFNIDGQELMLK 129 (771)
Q Consensus 118 g~~I~Gr~L~V~ 129 (771)
|+.|.|+.|.|.
T Consensus 244 g~~~~g~~l~v~ 255 (509)
T TIGR01642 244 SIIYSNVFLKIR 255 (509)
T ss_pred CeEeeCceeEec
Confidence 999999999985
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=5.9e-09 Score=113.76 Aligned_cols=88 Identities=20% Similarity=0.310 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCce-e--CCeEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-I--DGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~-I--~Gr~L~ 127 (771)
+.....+|||.||..+++.+|+.+|.+||.|.+|.|++|+.+|.++|||||.|.+.++|..|+.+||... | +...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4556789999999999999999999999999999999999999999999999999999999999998764 3 357889
Q ss_pred EEEehhhHHHH
Q 004161 128 LKVDQATREYL 138 (771)
Q Consensus 128 V~~a~~~k~~l 138 (771)
|++++..+..+
T Consensus 111 vk~Ad~E~er~ 121 (510)
T KOG0144|consen 111 VKYADGERERI 121 (510)
T ss_pred ecccchhhhcc
Confidence 99988765544
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=7.4e-09 Score=115.65 Aligned_cols=85 Identities=19% Similarity=0.315 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+-..|.|.|||+.|...+|+.+|+.||.|..+.|++. ..|+.+|||||.|.....|..||..+||..|+|+.|.|+|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999876 588888999999999999999999999999999999999998
Q ss_pred hhHHHH
Q 004161 133 ATREYL 138 (771)
Q Consensus 133 ~~k~~l 138 (771)
..-.|-
T Consensus 195 ~Kd~ye 200 (678)
T KOG0127|consen 195 DKDTYE 200 (678)
T ss_pred cccccc
Confidence 765554
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.4e-09 Score=110.07 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=81.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+|-+-|||..|++.+++++|.-||+.||.|.+|.++++..||.+..|+||+|.+.+++..|.-.|+++.|+.+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHH
Q 004161 131 DQATRE 136 (771)
Q Consensus 131 a~~~k~ 136 (771)
+++.-+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998655
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.76 E-value=2.7e-08 Score=114.72 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 130 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~L--ng~~I~Gr~L~V~~ 130 (771)
++++|||+|||+.+++.+|..+|+.||.|.++.++.+ ++||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4679999999999999999999999999999999864 479999999999999999864 78999999999998
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=100.11 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...++|||||||.++.+.+|+.||.+||.|..+.+-.. ..+.+||||+|+++-+|..||..-+|+.++|..|+|.|.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999987432 345689999999999999999999999999999999987
Q ss_pred hhh
Q 004161 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 653
No 55
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.74 E-value=3.4e-08 Score=115.10 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~--G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
..++|||+||+..+++++|+.+|+.| |.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+.+
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 865
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=4.8e-08 Score=109.34 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHh-----CC-ceeCCeE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQE 125 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~L-----ng-~~I~Gr~ 125 (771)
.-..||||.|||+++++..|..+|+.||.|.++.++.++.||.++|+|||.|.+...|..||.+. .| +.|+|+.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 34689999999999999999999999999999999999999999999999999999999999866 34 7899999
Q ss_pred EEEEEehhhH
Q 004161 126 LMLKVDQATR 135 (771)
Q Consensus 126 L~V~~a~~~k 135 (771)
|.|..+-..+
T Consensus 370 Lkv~~Av~Rk 379 (678)
T KOG0127|consen 370 LKVTLAVTRK 379 (678)
T ss_pred EeeeeccchH
Confidence 9998876543
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=98.71 E-value=6.3e-08 Score=82.46 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.0
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeccCCC--CCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 68 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 68 e~~Lr~lFs----~~G~V~s~k-iv~d~~s--Gk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+.+|..+|. .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 356778888 999999995 6666555 899999999999999999999999999999999986
No 58
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.71 E-value=1.6e-08 Score=113.59 Aligned_cols=79 Identities=25% Similarity=0.492 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
...+|||||.+++++.+|+.+|..||.|..+.+..+..+|.++||||++|.+.+.|..|+..|||++|.|+.|+|.+..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 3449999999999999999999999999999999997799999999999999999999999999999999999987644
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=1.8e-08 Score=105.44 Aligned_cols=70 Identities=19% Similarity=0.407 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..+||||||..++...|+.||.+||+|..|.|+.+ ||||..++...+..||+.|||+.|+|..|.|.-+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 46999999999999999999999999999999986 99999999999999999999999999999996444
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.68 E-value=9.4e-08 Score=77.47 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.5
Q ss_pred HHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 71 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 71 Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
|..+|++||.|..+.+.... .+++||+|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 689999999999999999999999999999999885
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=2.7e-08 Score=106.46 Aligned_cols=93 Identities=26% Similarity=0.470 Sum_probs=83.8
Q ss_pred CCCCCCCCCCC-------CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHH
Q 004161 39 VRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLR 111 (771)
Q Consensus 39 ~~p~~~p~~~~-------~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~ 111 (771)
++|.++|++.+ .....+.|||..+.++.++.+|+.+|..||.|.+|.+.+++..+.++||||++|.+..+...
T Consensus 188 grPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 188 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred cCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 46666666655 34567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEe
Q 004161 112 ALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 112 Al~~Lng~~I~Gr~L~V~~a 131 (771)
||..||-+.|+|..|+|.-+
T Consensus 268 AiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhhcchhhcccceEecccc
Confidence 99999999999999999644
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5.2e-08 Score=106.54 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
..+.+..+||++||....+.+|...|..||.|.+.++..|+.+|-++|||||.|++..+|..||..|||+.|++++|+|.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred Eeh
Q 004161 130 VDQ 132 (771)
Q Consensus 130 ~a~ 132 (771)
+..
T Consensus 500 lk~ 502 (510)
T KOG0144|consen 500 LKR 502 (510)
T ss_pred eee
Confidence 543
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1.4e-07 Score=103.80 Aligned_cols=75 Identities=16% Similarity=0.359 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....|||.||+.++|++.|+.+|+.||.|..++.++| ||||.|.+.++|..||..+||.+|+|..|.|.++
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 34578999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred hhh
Q 004161 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
.+.
T Consensus 329 KP~ 331 (506)
T KOG0117|consen 329 KPV 331 (506)
T ss_pred CCh
Confidence 874
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=2e-07 Score=93.97 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~-G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
.....-+||+.||..+.+..|..+|..| |.|..+.+.+++.||.++|||||+|++.+-|..|-..||++-|+|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3345569999999999999999999988 778888888999999999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004161 130 VDQAT 134 (771)
Q Consensus 130 ~a~~~ 134 (771)
|-...
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87664
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=92.88 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
....+.++|||||.+.+++..|..+|+.||.+.. -+++.++.+|.++||||+.|.+.+.+.+||..+||..++.+++.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3445688999999999999999999999998766 367888889999999999999999999999999999999999999
Q ss_pred EEeh
Q 004161 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.++-
T Consensus 172 ~ya~ 175 (203)
T KOG0131|consen 172 SYAF 175 (203)
T ss_pred EEEE
Confidence 8875
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.51 E-value=3.1e-07 Score=100.53 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
....+.|||.|||+++.+.+|+.||. +.|.|..|.+..| .+||++||+.|+|.+++.+..|+..||.+.+.|+.|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 34456699999999999999999997 7899999999999 799999999999999999999999999999999999997
Q ss_pred Eeh
Q 004161 130 VDQ 132 (771)
Q Consensus 130 ~a~ 132 (771)
-+.
T Consensus 120 Ed~ 122 (608)
T KOG4212|consen 120 EDH 122 (608)
T ss_pred ccC
Confidence 543
No 67
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=88.88 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-eccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKR-AQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~ki-v~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~---Gr~L~ 127 (771)
...+||||.+||.++..-+|..||..|-....+.+ ++++...-++-+|||+|.+...|.+|+..|||+.++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 44789999999999999999999998865555444 333222234579999999999999999999999998 88999
Q ss_pred EEEehhh
Q 004161 128 LKVDQAT 134 (771)
Q Consensus 128 V~~a~~~ 134 (771)
+.++.+.
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 9988764
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.46 E-value=1.5e-07 Score=98.77 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....+++|||||.+.++..+|+..|.+||.|..|+|+.+ |+||.|.-.+.|..|++.|++.+|.|+.++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 556889999999999999999999999999999999986 999999999999999999999999999999988
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
..+
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 764
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.42 E-value=1e-06 Score=94.46 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
...++.|||.|||.++|.+++..+|++||.|.+ |++..+ ..|+++|=|.|.|...+++.-|+.+|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445677999999999999999999999998864 788888 57999999999999999999999999999999
Q ss_pred CeEEEEEEehh
Q 004161 123 GQELMLKVDQA 133 (771)
Q Consensus 123 Gr~L~V~~a~~ 133 (771)
|+.|+|..|.-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999987653
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=6.7e-07 Score=99.71 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.+..|||-||++.++...|..+|+.||.|++|++..+ .+| ++|| ||.|.+.++|..||..|||..+.|++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 3444999999999999999999999999999999998 466 9999 999999999999999999999999999997655
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 152 ~ 152 (369)
T KOG0123|consen 152 R 152 (369)
T ss_pred c
Confidence 4
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=1e-06 Score=91.49 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 129 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~---Gr~L~V~ 129 (771)
..+.||||-|...-++++++.+|..||.|.+|.+.+. ..|.++||+||.|.+..+|..||..|||.... ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5788999999999999999999999999999999988 59999999999999999999999999998654 4679999
Q ss_pred EehhhH
Q 004161 130 VDQATR 135 (771)
Q Consensus 130 ~a~~~k 135 (771)
|++..+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 988643
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.33 E-value=1.2e-06 Score=89.50 Aligned_cols=85 Identities=16% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~----lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+..||||.||+..+.-++|+. ||+.||.|..+.... +.+.+|=|||.|.+...|..|+..|+|+.+-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999998887 999999999987653 6899999999999999999999999999999999999
Q ss_pred EEehhhHHHHHH
Q 004161 129 KVDQATREYLER 140 (771)
Q Consensus 129 ~~a~~~k~~le~ 140 (771)
.|+....+.+..
T Consensus 85 qyA~s~sdii~~ 96 (221)
T KOG4206|consen 85 QYAKSDSDIIAQ 96 (221)
T ss_pred ecccCccchhhc
Confidence 999887666633
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.30 E-value=8.4e-07 Score=102.42 Aligned_cols=84 Identities=25% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....+.|+|.|||+..+-..++.||+.||.|.++.|..-...+.++|||||+|-++.+|.+|+.+|.++.|.|+.|.+.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 33468899999999999999999999999999999877645677899999999999999999999999999999999999
Q ss_pred ehhh
Q 004161 131 DQAT 134 (771)
Q Consensus 131 a~~~ 134 (771)
+...
T Consensus 690 A~~d 693 (725)
T KOG0110|consen 690 AKSD 693 (725)
T ss_pred hccc
Confidence 8754
No 74
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.25 E-value=1.5e-06 Score=89.97 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=79.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
.....||+|-|.-.++++.|-..|.+|-.....+++++..+|+++|||||.|.++.++.+|+..++|..++.+.|.+.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 44688999999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred hhhHHHHHHHH
Q 004161 132 QATREYLERYV 142 (771)
Q Consensus 132 ~~~k~~le~~k 142 (771)
......++..+
T Consensus 268 ~wkeRn~dvv~ 278 (290)
T KOG0226|consen 268 EWKERNLDVVK 278 (290)
T ss_pred hHHhhhhHHHh
Confidence 44444444333
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.24 E-value=2.6e-06 Score=91.59 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHH-HHhCCceeCCeEEE
Q 004161 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELM 127 (771)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al-~~Lng~~I~Gr~L~ 127 (771)
+.+....|||||+|-..+++.+|+.+|.+||.|.++.+.... +||||+|.+..+|..|. ..++.+.|+|..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 345667899999999999999999999999999999987753 69999999999999666 67788999999999
Q ss_pred EEEehh
Q 004161 128 LKVDQA 133 (771)
Q Consensus 128 V~~a~~ 133 (771)
|.|...
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999886
No 76
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.23 E-value=2.1e-06 Score=99.82 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
++|||||+|+..+++.+|..+|..||.|.++.++.. ++||||.+....+|.+|+..|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999998765 49999999999999999999999999999999999864
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.22 E-value=3.3e-06 Score=97.22 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccC---CCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~---~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
.+..+++|||||++.+++.+|...|+.||+|.+++|++.+ .......||||.|-+..+|.+|+..|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557789999999999999999999999999999998865 2345567999999999999999999999999999999
Q ss_pred EEEehh
Q 004161 128 LKVDQA 133 (771)
Q Consensus 128 V~~a~~ 133 (771)
+.|..+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=3.5e-06 Score=97.48 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCC----CCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sG----k~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
++|||.||++.++...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|+..|+|+.|+|+.|.|.+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999999887653 22 2459999999999999999999999999999999998
Q ss_pred eh
Q 004161 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.18 E-value=8e-06 Score=91.88 Aligned_cols=77 Identities=26% Similarity=0.411 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
....+|||+|||++++..+|..+|..||.|....|..-...++..|||||+|.+..++..||. -+-+.|++++|.|.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 335669999999999999999999999999988775532245656999999999999999998 45889999999994
No 80
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.14 E-value=8.2e-06 Score=92.58 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=66.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I---~Gr~ 125 (771)
...+.+.|||.||...+|...|+.||+ .||.|... +.| +.+.+|||.|.+.++|.+.+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456688999999999999999999999 56666665 455 5678999999999999999999999975 5788
Q ss_pred EEEEEehh
Q 004161 126 LMLKVDQA 133 (771)
Q Consensus 126 L~V~~a~~ 133 (771)
|.+.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99988764
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4.7e-06 Score=93.00 Aligned_cols=74 Identities=20% Similarity=0.382 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhh
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~ 134 (771)
..|||| +.+++..|..+|+.+|.|.+++++.+. + +.|||||.|.++.+|.+||..||...|.|+.|++.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999995 4 9999999999999999999999999999999999997653
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.13 E-value=5.1e-06 Score=91.23 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+..|+|||.|||+++|+..|+.-|..||.|.+..|+ .+|+++| .|.|.+++.|.+|+.+|+|..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4568999999999999999999999999999999985 3688877 8999999999999999999999999999976
Q ss_pred e
Q 004161 131 D 131 (771)
Q Consensus 131 a 131 (771)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=4.1e-06 Score=95.42 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....+.+|||+||..+++..+.+++..||.+....++.+..+|.++||+||+|.++.-+..|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34467899999999999999999999999999999999988899999999999999999999999999999999999976
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
+-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 654
No 84
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.06 E-value=1.4e-05 Score=83.97 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
....++|+|.|||+.|.+.+|+++|..||.+..+.+..+ .+|.+.|.|-|.|...++|.+||..|||+.++|+.+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 444688999999999999999999999999999989888 5999999999999999999999999999999999998865
Q ss_pred ehh
Q 004161 131 DQA 133 (771)
Q Consensus 131 a~~ 133 (771)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.05 E-value=3.4e-06 Score=91.67 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..++||||+|+..++++.|+..|..||.|..|.++.++.++.++|||||+|.++..+.++|. ..-+.|+|+.|.+.-+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999999888876 44556778887776554
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=9.1e-06 Score=85.15 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
..+...|||||+.+.++...+..+|..||.|..+.+..+...|.++||+||+|.+...+..|+. |+|..|.|..+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4557889999999999999999999999999999999998888999999999999999999999 999999999999864
Q ss_pred eh
Q 004161 131 DQ 132 (771)
Q Consensus 131 a~ 132 (771)
-.
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 33
No 87
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.88 E-value=0.00034 Score=81.05 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=26.8
Q ss_pred CCccccCccCCCCCCcchhcccCCCCcccCCCChH
Q 004161 529 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 563 (771)
Q Consensus 529 ~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y~~e 563 (771)
.+.+.+.+||+.++|.|-+-..++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999998875545544 9999999884
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.87 E-value=1.6e-05 Score=86.36 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
....||||+||.++++.+|+..|.+||.|..+.++.|..+..+++||||.|.+.+++..++. .+.+.|+|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999998887 78889999999998766
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
+
T Consensus 175 p 175 (311)
T KOG4205|consen 175 P 175 (311)
T ss_pred c
Confidence 5
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.79 E-value=1.1e-05 Score=82.16 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
...||||+|+...+++..|.++|-..|+|..+.|..+ ..++.+ |+||.|.+..++.-|+.++||..+.+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3678999999999999999999999999999999877 577777 99999999999999999999999999999987644
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.3e-05 Score=80.75 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=64.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
..||||+||+.+.+.+|..+|..||.+..+.+.. |||||+|.+.-+|.-||..||+..|+|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4699999999999999999999999999987744 6999999999999999999999999999888877664
No 91
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=4.2e-05 Score=86.80 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
..+..+|+|-|||..|+.+.|..+|+.||.|..+.. +-...|.+||+|.+...|.+|+..|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445789999999999999999999999999999643 345568999999999999999999999999998877
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.51 E-value=0.00064 Score=62.05 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=66.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 128 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~--G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~----Gr~L~V 128 (771)
+||.|.|||-..+..+|.+++..+ |..--+.+..|..++.+.|||||.|.++..|..-...+||..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999998743 56666778888889999999999999999999999999999876 566667
Q ss_pred EEeh
Q 004161 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.39 E-value=0.0015 Score=71.95 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.+.|.|.||.. .+|.+.|..+|+.||.|.+++|..++ +--+.|.|.+...|.-|+.+|+|..|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888876 78999999999999999999998863 2579999999999999999999999999999998876
Q ss_pred hh
Q 004161 133 AT 134 (771)
Q Consensus 133 ~~ 134 (771)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.34 E-value=0.00064 Score=74.03 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
.....+|||-+||..++...|..+|.+||.|.. +.|.+++.|+++++=|.|+|.++..|+.||..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 444678999999999999999999999998863 567788899999999999999999999999999999999
Q ss_pred CeEEEEEEehh
Q 004161 123 GQELMLKVDQA 133 (771)
Q Consensus 123 Gr~L~V~~a~~ 133 (771)
+..|.|.++..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 98888876654
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.27 E-value=0.00043 Score=70.88 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCcee
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I 121 (771)
...+.|+||.||...|+++.|+.+|+.|.....++|... .| -+.+|+.|++.+.|..||..|.|..|
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 344679999999999999999999999987777776432 22 35799999999999999999998776
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.23 E-value=0.00017 Score=81.82 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
+++....|||+..|+..++.-+|..+|+.+|.|..+.++.+..++.++|.|||+|.+..++..||. |.|.-+.|..|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 346678999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEehhh
Q 004161 129 KVDQAT 134 (771)
Q Consensus 129 ~~a~~~ 134 (771)
....+.
T Consensus 253 q~sEae 258 (549)
T KOG0147|consen 253 QLSEAE 258 (549)
T ss_pred cccHHH
Confidence 776654
No 97
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.85 E-value=0.00066 Score=70.90 Aligned_cols=86 Identities=26% Similarity=0.279 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCC--------CCCce----eEEEEeCCHHHHHHHHHHhCCce
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 120 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~s--------Gk~kg----fGFVeF~~~esA~~Al~~Lng~~ 120 (771)
..-.||+++||+.+...-|++||+.||.|-++.+.....+ |.+.. =|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3457999999999999999999999999999987654333 33332 27899999999999999999999
Q ss_pred eCCeEEE-EEEehhhHHHH
Q 004161 121 IDGQELM-LKVDQATREYL 138 (771)
Q Consensus 121 I~Gr~L~-V~~a~~~k~~l 138 (771)
|+|++-. +..+.-..+||
T Consensus 153 Iggkk~S~~~~dlWNmKYL 171 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYL 171 (278)
T ss_pred cCCCCCCchHHhhhhhhhc
Confidence 9987633 22233344455
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.83 E-value=0.0073 Score=70.39 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=67.3
Q ss_pred CCCC-EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 52 KPQT-KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 52 ~~~~-tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.+.+ -|-|.|.|++++-++|.++|.-|-.+....+++....|++.|-|.|.|++.++|.+|...|++..|..+++.|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4445 677899999999999999999997665544444447899999999999999999999999999999999988754
No 99
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.75 E-value=0.0032 Score=68.08 Aligned_cols=95 Identities=22% Similarity=0.294 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G--~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
......+|||||-+++|+.+|...+...| .+..+++..++.+|.++||++|...+..+....+.+|....|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44456799999999999999999888877 5677788888899999999999999999999999999999999877555
Q ss_pred E-EehhhHHHHHHHHHhh
Q 004161 129 K-VDQATREYLERYVDKK 145 (771)
Q Consensus 129 ~-~a~~~k~~le~~k~kk 145 (771)
- ++......++...+|.
T Consensus 157 ~~~NK~~~ak~E~~~~K~ 174 (498)
T KOG4849|consen 157 LSYNKTNQAKLEDAQAKN 174 (498)
T ss_pred eccchhhHHHHHHHHhhh
Confidence 3 3444455555555443
No 100
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.68 E-value=0.00068 Score=74.21 Aligned_cols=66 Identities=14% Similarity=-0.026 Sum_probs=53.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
....|++|++|+..+-..++..+|..+|.|....+. .|-...||.+.|....+...|+. .+|..+.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 335789999999999999999999999999887653 34455678899999888888888 6666553
No 101
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.67 E-value=0.0031 Score=74.23 Aligned_cols=7 Identities=0% Similarity=-0.197 Sum_probs=3.1
Q ss_pred CCCCCCC
Q 004161 61 KIAPTAD 67 (771)
Q Consensus 61 NLp~~vt 67 (771)
.||+...
T Consensus 609 vlP~gLk 615 (1102)
T KOG1924|consen 609 VLPFGLK 615 (1102)
T ss_pred cCCCCCC
Confidence 4444433
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.59 E-value=0.01 Score=54.94 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=52.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELML 128 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Ln-----g~~I~Gr~L~V 128 (771)
++.|+|.+++..++-..|+.+|+.||.|..+.+.... .-|||-|.+++.|..|+..+. ++.|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3578999999999999999999999999998886642 489999999999999997663 44667777666
Q ss_pred EEeh--hhHHHHHHHHHhh
Q 004161 129 KVDQ--ATREYLERYVDKK 145 (771)
Q Consensus 129 ~~a~--~~k~~le~~k~kk 145 (771)
.+-. .-..|.++..+.+
T Consensus 75 ~vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 75 EVLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp E---HHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHH
Confidence 6543 3466776665543
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.57 E-value=0.01 Score=61.27 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=67.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~-Gr~L~V 128 (771)
..++..++|+.|||..++...+..+|..|+....+.++... .+.+||+|.+...+..|...|.|..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 45678899999999999999999999999999999887642 379999999999999999999999887 677777
Q ss_pred EEeh
Q 004161 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6553
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.53 E-value=0.0013 Score=71.28 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 53 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 53 ~~~tVf-VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
+..++| |+++++.++.+.|+.+|..||.|..+++..++.+|.+.|||||.|........++.. +...+.+..+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345555 999999999999999999999999999999999999999999999999999999886 788899999998765
Q ss_pred hh
Q 004161 132 QA 133 (771)
Q Consensus 132 ~~ 133 (771)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 105
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.41 E-value=0.013 Score=52.06 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=48.3
Q ss_pred CEEEEcCCCCCCCHH----HHHHHHHhcC-CeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 55 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 55 ~tVfVgNLp~~vte~----~Lr~lFs~~G-~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
+.|||.|||...+.. -|++|+..|| .|.++ .. +-|++-|.+.+.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~-------~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG-------GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T-------T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC-------CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988875 5567777886 56554 22 689999999999999999999999999999999
Q ss_pred EehhhHH
Q 004161 130 VDQATRE 136 (771)
Q Consensus 130 ~a~~~k~ 136 (771)
+....+.
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8765433
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.011 Score=67.65 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 004161 52 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 124 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte------~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~-Gr 124 (771)
.-..-|+|.|+|.--.. ..|..+|+++|.++...+..+. .|+++||.|++|.+..+|..|+..|||+.|+ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34567889999864332 3567899999999999998884 6669999999999999999999999999998 66
Q ss_pred EEEEE
Q 004161 125 ELMLK 129 (771)
Q Consensus 125 ~L~V~ 129 (771)
.+.|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 67664
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.23 E-value=0.013 Score=66.34 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
....-|-+.+||+++|+.+|..+|+.|+ |..+.+.+ .+|++.|=|||+|.+.+++..|+. .+...++.+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3455677899999999999999999996 66655544 589999999999999999999998 7888888888888544
No 108
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.20 E-value=0.01 Score=64.14 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCEEEEcCCCCCCCHHH------HHHHHHhcCCeeEEEEeccC--CCCCCceeE-EEEeCCHHHHHHHHHHhCCceeCCe
Q 004161 54 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP--SNGTPKGFG-FCEFESAEGVLRALRLLNKFNIDGQ 124 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~------Lr~lFs~~G~V~s~kiv~d~--~sGk~kgfG-FVeF~~~esA~~Al~~Lng~~I~Gr 124 (771)
..-|||-+||+.+..+. -.++|++||.|..+.+-... .+.....+| ||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999887765 24799999999988764432 111112243 9999999999999999999999999
Q ss_pred EEEEEEehhhHHHHHHHHH
Q 004161 125 ELMLKVDQATREYLERYVD 143 (771)
Q Consensus 125 ~L~V~~a~~~k~~le~~k~ 143 (771)
.|+..+. +.+|.-.|..
T Consensus 194 ~lkatYG--TTKYCtsYLR 210 (480)
T COG5175 194 VLKATYG--TTKYCTSYLR 210 (480)
T ss_pred eEeeecC--chHHHHHHHc
Confidence 9998654 4566666653
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.17 E-value=0.075 Score=58.43 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 50 AEKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
...+++-+.|-+|.. .+..+.|-.+|..||.|..++++..+ + |-|.|++.+.....+|+.+||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-P----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-c----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 355678899999987 46667999999999999999998863 2 68999999999999999999999999999999
Q ss_pred EEeh
Q 004161 129 KVDQ 132 (771)
Q Consensus 129 ~~a~ 132 (771)
.++.
T Consensus 358 ~~Sk 361 (494)
T KOG1456|consen 358 CVSK 361 (494)
T ss_pred eecc
Confidence 7764
No 110
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.15 E-value=0.0051 Score=68.37 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEecc---CCC--CCC--------ceeEEEEeCCHHH
Q 004161 42 VPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEG 108 (771)
Q Consensus 42 ~~~p~~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d---~~s--Gk~--------kgfGFVeF~~~es 108 (771)
.++|......-+.+||.+-|||.+-.-.-|..||+.||.|..+.|+.. +.+ |.+ +-|+||+|...+.
T Consensus 219 sPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 219 SPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred CCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 344555555668999999999999999999999999999999999876 322 222 4589999999999
Q ss_pred HHHHHHHhCCcee
Q 004161 109 VLRALRLLNKFNI 121 (771)
Q Consensus 109 A~~Al~~Lng~~I 121 (771)
|..|...|+....
T Consensus 299 A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 299 ARKARELLNPEQN 311 (484)
T ss_pred HHHHHHhhchhhh
Confidence 9999997765543
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=0.0053 Score=63.59 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
....+.++|-|++..+...+|..+|..+|.+....+ ..+|+||.|....++..||..|+|..+.++.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 445788999999999999999999999999844433 2379999999999999999999999999999998
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.93 E-value=0.02 Score=65.20 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=59.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHH
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~ 114 (771)
-.+..|||||+||.-++..+|-.||. .||.|..+.|=+|+.=+.++|-|-|+|.+..+..+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 45678999999999999999999999 89999999999998888999999999999999999997
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.45 E-value=0.064 Score=52.43 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCCCEEEEcCCC------CCCCH---HHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 52 KPQTKVYVGKIA------PTADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp------~~vte---~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
++.-||.|.-+. ..+.+ ..|.+.|..||.+.-++++.+ .-+|+|.+-.+|++|+. |+|..|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 345566665444 12333 267778889999888877654 67999999999999999 9999999
Q ss_pred CeEEEEEE
Q 004161 123 GQELMLKV 130 (771)
Q Consensus 123 Gr~L~V~~ 130 (771)
|+.|.|.+
T Consensus 96 g~~l~i~L 103 (146)
T PF08952_consen 96 GRTLKIRL 103 (146)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999964
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.42 Score=56.99 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.6
Q ss_pred HHHHhhhCCCCC
Q 004161 219 MVEERLKTNPLP 230 (771)
Q Consensus 219 ~~eer~~~~~~~ 230 (771)
+|+-...+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 344333344433
No 115
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.87 E-value=0.055 Score=60.09 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~G-r~L~V~ 129 (771)
-+++.+++..|||.++++++|+.+|...|........ -++.+.++++.+.+.++|..|+..+|.+.+++ .-|+|.
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 3567799999999999999999999999877665432 24566799999999999999999999999985 489999
Q ss_pred Eehh
Q 004161 130 VDQA 133 (771)
Q Consensus 130 ~a~~ 133 (771)
|...
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8865
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.79 E-value=0.082 Score=57.74 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=62.9
Q ss_pred CCCCEEEEcCCCC----CCC-------HHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCce
Q 004161 52 KPQTKVYVGKIAP----TAD-------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (771)
Q Consensus 52 ~~~~tVfVgNLp~----~vt-------e~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~ 120 (771)
...+||.|.|+=. ..+ .++|..-+.+||.|.++.+.-. .+.|.+-|.|.+.+.|..||+.|+|-.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4467888888743 222 1355566889999999988533 466899999999999999999999999
Q ss_pred eCCeEEEEEEehhh
Q 004161 121 IDGQELMLKVDQAT 134 (771)
Q Consensus 121 I~Gr~L~V~~a~~~ 134 (771)
++|++|...+.+..
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998876654
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.64 E-value=0.16 Score=46.75 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCC-------CCCCceeEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 125 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~-------sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr-~ 125 (771)
.+.|.|-+.|+. ....|...|+.||.|....-+.... ......+-.+.|.++.+|.+||. .||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345777778877 4467888999999998875111100 11234588999999999999999 899999875 4
Q ss_pred EEEEEehh
Q 004161 126 LMLKVDQA 133 (771)
Q Consensus 126 L~V~~a~~ 133 (771)
+-|.+++.
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777654
No 118
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.53 E-value=0.11 Score=59.19 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=61.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
+...|-+.+||+.|++.+|.++|+..-.|.. +.++.+ ..|++.|=+||.|++.+.|..||. -|...|+.+-|.|-
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 4567889999999999999999997755554 445555 578899999999999999999997 67777888887774
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.35 E-value=0.17 Score=59.51 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
......|||-.||..++...+..+|...-.|.. +.|... -+++..+-|||.|..+..+..|+..-+.+.++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 444678999999999999999999998777777 555554 588899999999999999999998888889999999985
No 120
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.24 E-value=0.082 Score=58.47 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCC---CCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~s---Gk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
.|.|.||.+.++-++|+.||+..|.|..+.++....+ ....-.|||.|.+...+..|-.+-|-+.|+--.|++-|.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 7899999999999999999999999999988764322 2234579999999999988877445555554444444444
Q ss_pred h
Q 004161 133 A 133 (771)
Q Consensus 133 ~ 133 (771)
.
T Consensus 89 ~ 89 (479)
T KOG4676|consen 89 E 89 (479)
T ss_pred C
Confidence 3
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.20 E-value=0.22 Score=50.27 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=57.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
.....|.|.+||++.++.+|+.++...|.|+...+..| |+|.|+|...++..=||+.|....+.
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 34578999999999999999999999999999999888 69999999999999999989776554
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.08 E-value=0.11 Score=62.83 Aligned_cols=83 Identities=12% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 004161 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 127 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~G--r~L~ 127 (771)
...+.+.+|||+|..++....|...|..||.|..+.+-. ...|+||.|++...+..|+..|-|+.|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345578899999999999999999999999999876533 23699999999999999999999999984 7799
Q ss_pred EEEehhhHHHH
Q 004161 128 LKVDQATREYL 138 (771)
Q Consensus 128 V~~a~~~k~~l 138 (771)
|.|+...-.+-
T Consensus 525 vdla~~~~~~P 535 (975)
T KOG0112|consen 525 VDLASPPGATP 535 (975)
T ss_pred cccccCCCCCh
Confidence 98887544443
No 123
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.56 E-value=0.46 Score=54.56 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=47.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeccC-CCCCCce---eEEEEeCCHHHHHHHHHHh
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLL 116 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V-~s~kiv~d~-~sGk~kg---fGFVeF~~~esA~~Al~~L 116 (771)
.-.+.||||+||.++++..|...|..||.+ +.|-.-... .---++| |.|..|++..++..-|.++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 446789999999999999999999999976 345320100 1112245 9999999998887666544
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.39 E-value=0.22 Score=57.63 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCeeEEEEecc-C--CCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 70 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 70 ~Lr~lFs~~G~V~s~kiv~d-~--~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+|+.-|++||.|.+|.+... . ...-..|..||+|.+.+++..|+..|+|..++|+.+...|.+.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45556678999999998776 2 3344567789999999999999999999999999999988764
No 125
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.95 E-value=0.42 Score=52.31 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHH-HHHHHhCCceeCCeEEEEEEehhhH
Q 004161 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 135 (771)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~-~Al~~Lng~~I~Gr~L~V~~a~~~k 135 (771)
+.|+.-.+.+++.++..++.+.-.|.+..|.+. .++.+.| .|.+..+.+ +||.++ +.-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lI-------KqSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLI-------KQSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHH-------HhhccccchHHH
Confidence 556666677999999999999988888877665 5677766 677766654 888866 456777788888
Q ss_pred HHHHHH
Q 004161 136 EYLERY 141 (771)
Q Consensus 136 ~~le~~ 141 (771)
.++..+
T Consensus 416 vLissL 421 (498)
T KOG4849|consen 416 VLISSL 421 (498)
T ss_pred HHHHHH
Confidence 877544
No 126
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.94 E-value=0.24 Score=40.20 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=40.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHH
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 113 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al 113 (771)
+.|-|.+.++...+. +...|..||.|....+.. ...+.|+.|.+..+|..||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467788888777644 455888999999987752 2369999999999999885
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.81 E-value=0.042 Score=65.79 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
...|||.|.|+..|.+.++.+|..+|.+++..+++. ..|+++|.+||.|.+..++.+|+....+..+.-..+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 357999999999999999999999999999998887 6999999999999999999999987777777777777766554
No 128
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=91.98 E-value=0.87 Score=57.34 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.2
Q ss_pred CCCCchhhhcccccccccchh
Q 004161 669 IPKTKEELFSYEINWAVYDKH 689 (771)
Q Consensus 669 ip~~k~~lf~~~i~w~~~d~~ 689 (771)
|..-|..++.-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 344455555545554444433
No 129
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.56 E-value=0.51 Score=50.71 Aligned_cols=64 Identities=22% Similarity=0.134 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCeeEEEEeccCCCCCC-ceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 69 DFVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 69 ~~Lr~lFs~~G~V~s~kiv~d~~sGk~-kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
+.+..-|.+||.|..|.|.-.+...-. ..--||+|+..++|..|+..|||-.|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467788999999999988766422222 3457999999999999999999999999998876654
No 130
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=91.47 E-value=0.48 Score=52.52 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCC-eeE--EEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s--~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
...|-+.+||+..+-++|..+|.-|.. |.. +.++.+ ..|.+.|-+||.|.+.+.|..|....|.....++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 456888999999999999999998863 333 677776 6899999999999999999999988887776677777743
Q ss_pred e
Q 004161 131 D 131 (771)
Q Consensus 131 a 131 (771)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 3
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.45 E-value=0.021 Score=68.22 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
..+++||.||+..+...+|...|+.+|.+..+.+......|.++|+||+.|..+..+.+||....+..++...+-|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 3578999999999999999999999998888777655578999999999999999999999866555554333333
No 132
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=7.3 Score=47.06 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 004161 367 EKEKEKERE 375 (771)
Q Consensus 367 ekerere~e 375 (771)
|=|++||.+
T Consensus 382 eiE~qrEEe 390 (1118)
T KOG1029|consen 382 EIERQREEE 390 (1118)
T ss_pred HHHHHHHHH
Confidence 333333333
No 133
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=91.12 E-value=0.58 Score=51.77 Aligned_cols=73 Identities=22% Similarity=0.132 Sum_probs=59.9
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEehhhHH
Q 004161 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQATRE 136 (771)
Q Consensus 59 VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~~a~~~k~ 136 (771)
|-|--+.++.+-|..|+..+|.|.++.|... + .--+.|+|++.+.|.+|...|||..|. =..|+|.++.+++-
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 3455568999999999999999999988763 3 346899999999999999999999886 35688888877643
No 134
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.58 E-value=2.6 Score=53.26 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.1
Q ss_pred HHHHHhC
Q 004161 111 RALRLLN 117 (771)
Q Consensus 111 ~Al~~Ln 117 (771)
.||..||
T Consensus 129 ~ALaYLH 135 (1021)
T PTZ00266 129 HALAYCH 135 (1021)
T ss_pred HHHHHHH
Confidence 3444444
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.37 E-value=0.19 Score=60.70 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=65.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~ 130 (771)
.....|||+|||...+++..|+..|..+|.|..+.|-+. .-+....||||.|.+...+..|+..+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 344789999999999999999999999999999987554 2455567999999999999999988888887755555554
Q ss_pred e
Q 004161 131 D 131 (771)
Q Consensus 131 a 131 (771)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 136
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.79 E-value=0.33 Score=51.28 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=56.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhC
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Ln 117 (771)
..|||.||+..++.+.+.+-|+.||.|....++.| ..|++.+=|+|.|...-.+..|++.++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999998887777 689999999999999999999998773
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=89.26 E-value=0.48 Score=53.08 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=57.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEeh
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 132 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~-~I~Gr~L~V~~a~ 132 (771)
..+|||||.+.++..+|..+|+..-. +..-.++.. ||+||.+.+..-|..|+..|+|. ++.|+.+.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421 111123332 89999999999999999999886 6889999987665
Q ss_pred hhH
Q 004161 133 ATR 135 (771)
Q Consensus 133 ~~k 135 (771)
..+
T Consensus 75 ~kk 77 (584)
T KOG2193|consen 75 PKK 77 (584)
T ss_pred hHH
Confidence 543
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.22 E-value=0.19 Score=54.87 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=63.9
Q ss_pred CEEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeccCC--CC-CCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 55 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS--NG-TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr---~lFs~~G~V~s~kiv~d~~--sG-k~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
.-+||-+|+..+.+..+. ..|+.||.|..+.+..++. ++ .+.+-++|+|...+.|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 558899999877666443 5788999999988777641 11 11223899999999999999999999999998655
Q ss_pred EEehhhHHHHHHHHH
Q 004161 129 KVDQATREYLERYVD 143 (771)
Q Consensus 129 ~~a~~~k~~le~~k~ 143 (771)
. ..+.+|-..|+.
T Consensus 158 ~--~gttkycs~~l~ 170 (327)
T KOG2068|consen 158 S--LGTTKYCSFYLR 170 (327)
T ss_pred h--hCCCcchhHHhh
Confidence 4 344455555543
No 139
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.88 E-value=25 Score=37.87 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=28.8
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEe
Q 004161 51 EKPQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRA 87 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~------------vte~~Lr~lFs~~G~V~s~kiv 87 (771)
+..+.|||+.+||.. -++.-|...|..||.|..+.|+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 444678999998853 3457899999999999988764
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.66 E-value=1.5 Score=53.10 Aligned_cols=75 Identities=19% Similarity=0.157 Sum_probs=59.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEe
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVD 131 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~--Gr~L~V~~a 131 (771)
..+.++-|.+-..+...|..+|+.||.|.+....++- ..+.|+|.+.++|..|+.+|+|.++- |-..+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3445566666678888999999999999987766653 58999999999999999999998653 777888776
Q ss_pred hhh
Q 004161 132 QAT 134 (771)
Q Consensus 132 ~~~ 134 (771)
...
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 643
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.41 E-value=6.5 Score=42.80 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=47.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004161 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (771)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (771)
|-|-+.|+... ..|..+|.+||.|+..... ....|-+|.|.+...|..||. .||..|+|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 44445665543 5777899999999876443 344799999999999999998 8999998754
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=84.97 E-value=1.5 Score=48.89 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc----CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~----G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
...|-..+||++++..++..+|... |....+-+++. .+|+..|-+||.|...+.|..||. -|...|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i-------- 230 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI-------- 230 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH--------
Confidence 4567789999999999999999732 34445666665 589999999999999999999997 333222
Q ss_pred EehhhHHHHHHHHHhhh
Q 004161 130 VDQATREYLERYVDKKT 146 (771)
Q Consensus 130 ~a~~~k~~le~~k~kk~ 146 (771)
.+.|++-|+....
T Consensus 231 ----GqRYIElFRSTaa 243 (508)
T KOG1365|consen 231 ----GQRYIELFRSTAA 243 (508)
T ss_pred ----hHHHHHHHHHhHH
Confidence 2578877775543
No 143
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=82.47 E-value=5.7 Score=38.98 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=56.3
Q ss_pred CCCCCCEEEEcCCCCCCCH----HHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 004161 50 AEKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (771)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte----~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~ 125 (771)
-+++-.||.|.=|..++.. ..+..-++.||.|.++...- +.-+.|.|.+..+|-.|+.+++. ..-|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 3566778888766555443 35666778999999986642 24789999999999999999876 555778
Q ss_pred EEEEEeh
Q 004161 126 LMLKVDQ 132 (771)
Q Consensus 126 L~V~~a~ 132 (771)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8887754
No 144
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.04 E-value=3.5 Score=42.15 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEehh
Q 004161 68 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQA 133 (771)
Q Consensus 68 e~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Ln--g~~I~Gr~L~V~~a~~ 133 (771)
...|+.+|..|+.+..|..... -+-..|.|.+.+.|..|...|+ +..++|..|+|-++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3689999999999999987654 2457899999999999999999 9999999999988754
No 145
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=79.07 E-value=8.7 Score=32.46 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=43.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~---G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~L 116 (771)
+..|+|.|+. .++..+|+.+|..| .....+..+-| .-|-|.|.+...|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 4579999975 58889999999988 13456666666 36778999999999999764
No 146
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=78.61 E-value=1.8 Score=53.85 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=24.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK 85 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~k 85 (771)
..+++|-.+-..+....|+.+.+.||...+..
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~ 103 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVL 103 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhh
Confidence 46677777777888899999999988766553
No 147
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.46 E-value=2.8 Score=42.48 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEec---cCCCCC--CceeEEEEeCCHHHHHHHHHHhCCceeC---
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID--- 122 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~-~G~V~s~kiv~---d~~sGk--~kgfGFVeF~~~esA~~Al~~Lng~~I~--- 122 (771)
...+.|.|.+||++++++.+...++. +|....|..+. +..+.+ ..+-|||.|.+.+.+..-+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34678999999999999999987776 66664444332 111222 2356899999999999999999997654
Q ss_pred C--eEEEEEEehh
Q 004161 123 G--QELMLKVDQA 133 (771)
Q Consensus 123 G--r~L~V~~a~~ 133 (771)
| ....|.++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3445666665
No 148
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=77.44 E-value=3.4 Score=30.24 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 004161 727 KASQMLELLQTILDDEAEMFVLKM 750 (771)
Q Consensus 727 ~p~~l~~~l~~~ld~~a~~fv~~l 750 (771)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 149
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=75.95 E-value=5.3 Score=46.59 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHh----------------------------cCCeeEEEEeccCCCCCCceeEEEEeCC
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKV----------------------------CGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~----------------------------~G~V~s~kiv~d~~sGk~kgfGFVeF~~ 105 (771)
.+++.|+||+...+..+|..|+.. .|.--.+.++.|-.+....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 456777777766666666655542 2333334456665667778999999999
Q ss_pred HHHHHHHHHHhCCceeC----CeEEEEEEeh
Q 004161 106 AEGVLRALRLLNKFNID----GQELMLKVDQ 132 (771)
Q Consensus 106 ~esA~~Al~~Lng~~I~----Gr~L~V~~a~ 132 (771)
++.+..+..++||..+. .+.+.+.||.
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999999999654 3445566654
No 150
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=74.73 E-value=2.3 Score=46.31 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a 131 (771)
...+++|||++...+.......++..+|.+..+.+........+++|+++.|...+.+..|+.....+.+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35788999999999999999999999998888877665578899999999999999999999844444555555554443
Q ss_pred h
Q 004161 132 Q 132 (771)
Q Consensus 132 ~ 132 (771)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 151
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=73.93 E-value=16 Score=33.52 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=56.1
Q ss_pred HhhhhhhhHHHHHHHhhCcchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004161 691 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 764 (771)
Q Consensus 691 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~life~~~~~~g 764 (771)
+.+-||--|.+|...+=.+-|| .+-+||+=.+....++..++.+|...+|.=...++...-....|..++.+.|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999888666555 4889999999999999999999999999777777777777777777777666
No 152
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=72.06 E-value=9.7 Score=34.17 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=40.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCC
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng 118 (771)
+-.||+ .|..+...+|.++|+.||.|. +..+.+ .-|||.....+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 344555 899999999999999999874 333444 4799999999999999988853
No 153
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=71.89 E-value=2.6 Score=48.21 Aligned_cols=73 Identities=7% Similarity=-0.001 Sum_probs=57.7
Q ss_pred CEEEEcCCCCCCCH-HHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 55 TKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 55 ~tVfVgNLp~~vte-~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+.+-+.-+|+++.. ..|...|..||.|..|.+-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|.|-..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 44444555666655 489999999999999977443 2578999999999977776 799999999999999765
Q ss_pred h
Q 004161 134 T 134 (771)
Q Consensus 134 ~ 134 (771)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 154
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=71.32 E-value=2.6 Score=44.80 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=47.8
Q ss_pred hcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehh
Q 004161 77 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (771)
Q Consensus 77 ~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~ 133 (771)
+||.|..+.+..+ ..-...|=.||.|...++|.+|+..||+-.++|++|...+..-
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 8999999877665 2344567889999999999999999999999999999887654
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=67.79 E-value=42 Score=31.55 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=46.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 56 KVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~-G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
.+-+...|..++.+.|..+...+ ..|..++|+++ ..-++-...+.|.+...|..-...+||..++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33344555556666776666655 45667788776 2235667899999999999999999999765
No 156
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=67.19 E-value=24 Score=30.36 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=37.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCCe-----eEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 004161 56 KVYVG-KIAPTADSDFVLSVLKVCGTV-----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (771)
Q Consensus 56 tVfVg-NLp~~vte~~Lr~lFs~~G~V-----~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~ 129 (771)
++||. +--..++...|..+|...+.| -.+.+.. .|.||+-... .+..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 334467777888888766544 4555544 3899888764 6778899999999999999997
Q ss_pred Ee
Q 004161 130 VD 131 (771)
Q Consensus 130 ~a 131 (771)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 157
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=64.73 E-value=1.4e+02 Score=36.15 Aligned_cols=6 Identities=50% Similarity=1.038 Sum_probs=2.8
Q ss_pred cccCCC
Q 004161 555 LVPIDY 560 (771)
Q Consensus 555 LvPl~y 560 (771)
+||=-|
T Consensus 559 fVPhgy 564 (811)
T KOG4364|consen 559 FVPHGY 564 (811)
T ss_pred ecCCcc
Confidence 445444
No 158
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=58.58 E-value=25 Score=42.87 Aligned_cols=6 Identities=33% Similarity=1.132 Sum_probs=2.8
Q ss_pred HHHhhC
Q 004161 703 ITEFLG 708 (771)
Q Consensus 703 i~e~lG 708 (771)
+++|+|
T Consensus 699 ~~~y~G 704 (830)
T KOG1923|consen 699 VVEYFG 704 (830)
T ss_pred HhHhhC
Confidence 444444
No 159
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=55.71 E-value=16 Score=42.76 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH--hcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 004161 52 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 127 (771)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs--~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng--~~I~Gr~L~ 127 (771)
...|.|.+.-||.++..+.++.||. .|-.+.+|.+..+ .-=||+|++..+|..|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3467889999999999999999998 5889999988765 2458999999999999876632 246666665
Q ss_pred E
Q 004161 128 L 128 (771)
Q Consensus 128 V 128 (771)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 4
No 160
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=55.01 E-value=5.4 Score=48.36 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=22.6
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEehhhHHHHHHHHHhhhh
Q 004161 96 KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTE 147 (771)
Q Consensus 96 kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~~~k~~le~~k~kk~e 147 (771)
-.||||.-...- -+.+|..+|-...+. +.|. +.....+--+|.+-+..
T Consensus 158 DtygfVD~dvff-Qls~~~g~hp~vgD~--V~ve-a~Ynpsmpfkwnaqriq 205 (1194)
T KOG4246|consen 158 DTYGFVDQDVFF-QLSKMQGLHPSVGDA--VNVE-ADYNPSMPFKWNAQRIQ 205 (1194)
T ss_pred cccccccHHHHH-HHHHHhcCCCccccc--eeee-cccCCCCCccccHHHHH
Confidence 358888533322 345555555444333 3332 22222445566665543
No 161
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=52.13 E-value=17 Score=43.51 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.1
Q ss_pred hhhhhhhHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004161 692 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 755 (771)
Q Consensus 692 ~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~li 755 (771)
..+++--+.....+|+|-.-+.+++.|+..|........=+.+|.-||.++...||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3688889999999999998766666667766655544445559999999999999999999886
No 162
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=46.65 E-value=39 Score=39.31 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.8
Q ss_pred ccCCCChHHHh
Q 004161 556 VPIDYSTEELQ 566 (771)
Q Consensus 556 vPl~y~~ee~~ 566 (771)
||-|-.+|-+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 33344454443
No 163
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.56 E-value=62 Score=37.33 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeccCCCCCC-ceeEEEEeCCHHHHHHHHHHhCCceeC
Q 004161 53 PQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNID 122 (771)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~-G~V~s~kiv~d~~sGk~-kgfGFVeF~~~esA~~Al~~Lng~~I~ 122 (771)
+.+.|+|-.+|-.++-.+|..|+..| -.|..++++++ |.+ +-...+.|.+..+|..-...+||..++
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999998865 57888999985 334 345799999999999999999999765
No 164
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=45.14 E-value=34 Score=36.74 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=48.1
Q ss_pred CCCCCEEEEcCCCCCCCHHH-H--HHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCe
Q 004161 51 EKPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~-L--r~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr 124 (771)
.+.....|++++-..+...- | ...|+.+-.+...+++.+ ..+...+++|+.|........+...-++..++..
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~ 168 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKP 168 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCc
Confidence 34455667777666555543 3 677787778888888887 4788889999998876655555544444444333
No 165
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=44.59 E-value=7.9 Score=33.34 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHH
Q 004161 726 VKASQMLELLQTILDDEAEMFVLKM 750 (771)
Q Consensus 726 ~~p~~l~~~l~~~ld~~a~~fv~~l 750 (771)
.+-..||++|..||..+|+.||...
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999753
No 166
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.01 E-value=37 Score=30.62 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCC
Q 004161 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (771)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~ 105 (771)
.-|||||++..+-+.-...+...++.-.-+-+..+ +. ..||+|.++-+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--NN-EQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--CC-CCCEEEEEeCC
Confidence 34999999999998888888887766555555443 22 88999998843
No 167
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=42.04 E-value=1.7e+02 Score=31.93 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=35.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHH
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEG 108 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~es 108 (771)
.+-||++|||.++...+|+.-+...|.+--. +.+. .+.|-||..|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~-iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMS-ISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCcee-Eeee----cCCcceeEecCCccC
Confidence 4569999999999999999999987754211 1111 234678999987543
No 168
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=40.94 E-value=1.4e+02 Score=25.54 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 004161 65 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (771)
Q Consensus 65 ~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~V 128 (771)
.++-.+|+..|..|+- ..+ ..+ .+ | -||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--Eec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4667899999999962 222 233 12 2 379999999999999999999887777654
No 169
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=39.21 E-value=32 Score=39.77 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=45.0
Q ss_pred hhhhhhHHHHHHHhhCcchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004161 693 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 755 (771)
Q Consensus 693 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~ld~~a~~fv~~lWr~li 755 (771)
+.|+-|...-..=+---.-..|..||+-.|+... =+..++..|..||-+++..||.||+..|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4566666654333333333458899999997644 34567799999999999999999986653
No 170
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.93 E-value=1.2e+02 Score=36.05 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=56.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CCeeEEEEeccC----------CCCC---------------------
Q 004161 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 94 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~Lr~lFs~~----G~V~s~kiv~d~----------~sGk--------------------- 94 (771)
....++|-|.|+.+. +...+|.-+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455778999999984 6666888888865 589998875421 2222
Q ss_pred ---------------C-ceeEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004161 95 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (771)
Q Consensus 95 ---------------~-kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (771)
. +-|+.|+|.+...|......++|+++...-+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1 2368899999999999999999999884333
No 171
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.33 E-value=5.2 Score=46.65 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L 126 (771)
.|++||.||+++++-..|..+|..+-.+..+.+..........-+++|+|.--....-|+-+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 4789999999999999999999998777777665543344556789999998888888888888886554333
No 172
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=36.53 E-value=34 Score=40.23 Aligned_cols=12 Identities=33% Similarity=0.243 Sum_probs=5.9
Q ss_pred EeCCHHHHHHHH
Q 004161 102 EFESAEGVLRAL 113 (771)
Q Consensus 102 eF~~~esA~~Al 113 (771)
+.-+-.+|.+||
T Consensus 326 ec~sW~~avaaL 337 (582)
T PF03276_consen 326 ECGSWASAVAAL 337 (582)
T ss_pred ccccHHHHHHHH
Confidence 334445555555
No 173
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=35.53 E-value=72 Score=28.37 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=38.9
Q ss_pred HHHHHHhhCcchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHHHHHHHH
Q 004161 700 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVL 748 (771)
Q Consensus 700 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~p~~l~~~l~~~ld~~a~~fv~ 748 (771)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=+.
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Ll 59 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLL 59 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHH
Confidence 578999999 58889999999997643 6678999999999987765433
No 174
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=34.86 E-value=9.1 Score=40.04 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=63.1
Q ss_pred CCCCEEEEcC----CCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 004161 52 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (771)
Q Consensus 52 ~~~~tVfVgN----Lp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr~L~ 127 (771)
....++++|+ |...++...+...|+..|.+..+.+.++ .+|.+..|+|+.|.-....-.++....++.+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 3457888998 7788999999999999999999998888 5799999999999998888889887777765544444
Q ss_pred E
Q 004161 128 L 128 (771)
Q Consensus 128 V 128 (771)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 4
No 175
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.29 E-value=38 Score=36.54 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=44.8
Q ss_pred hHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 004161 698 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 754 (771)
Q Consensus 698 wi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-ld~~--a~~fv~~lWr~l 754 (771)
-|+....-|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 34555677999999999999999999999998888777666 5432 467999999654
No 176
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=31.94 E-value=56 Score=43.76 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.4
Q ss_pred HHHhcC
Q 004161 74 VLKVCG 79 (771)
Q Consensus 74 lFs~~G 79 (771)
|..+.|
T Consensus 1749 LHDR~G 1754 (2039)
T PRK15319 1749 LYDREG 1754 (2039)
T ss_pred HHHcCC
Confidence 333444
No 177
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.39 E-value=39 Score=34.50 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHH-----HHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 004161 54 QTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELM 127 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~-----~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~Lng~~I~Gr-~L~ 127 (771)
.+++++.+|+..+... ....+|..|-......+.+. .++--|.|.++..|..|...+++..|.|+ .|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4567788887765443 44455665544443333332 24556899999999999999999999998 777
Q ss_pred EEEehh
Q 004161 128 LKVDQA 133 (771)
Q Consensus 128 V~~a~~ 133 (771)
.-+++.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 766664
No 178
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=31.02 E-value=4.5e+02 Score=27.39 Aligned_cols=73 Identities=33% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004161 309 LKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKE 381 (771)
Q Consensus 309 ~er~~ere~~r~~r~rerer~r~~r~~~~~~re~E~~y~er~r~we~RER~r~~~r~~ekerere~er~r~~e 381 (771)
..+..+++..+..+..++.....++...+...+.+++-..+++.-..+++..+.....+..+.++.++....+
T Consensus 99 ~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~keeekr~~eE 171 (216)
T PF11600_consen 99 EEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRKKEEEKRKKEE 171 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
No 179
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.94 E-value=1.4e+02 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.9
Q ss_pred hhHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 004161 697 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 752 (771)
Q Consensus 697 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~ld~~a~~fv~~lWr 752 (771)
+++..-+.-++....+.+..++-..+....+|..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56777777788888888999999999887899999987 8888876 666775
No 180
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=29.80 E-value=1.2e+02 Score=27.33 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=47.2
Q ss_pred hhhhhhhHHHHHHHh--hCc---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 004161 692 HERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 748 (771)
Q Consensus 692 ~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~ 748 (771)
.+.|+|||..|+.|| ||. ..+.|=+|+++..-.+..|..|-+-+..||-=.+-.||.
T Consensus 6 ~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 6 REQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 467999999999986 565 477899999999988888888888888888877777765
No 181
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.66 E-value=49 Score=42.09 Aligned_cols=17 Identities=47% Similarity=0.974 Sum_probs=11.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 004161 3 RPAFPPRPPGPVGVLPS 19 (771)
Q Consensus 3 ~P~~Pp~PP~p~g~~P~ 19 (771)
+|++||+||+|+|.-|+
T Consensus 5 ppg~ppppppppg~epp 21 (2365)
T COG5178 5 PPGNPPPPPPPPGFEPP 21 (2365)
T ss_pred CCCCCcccccCCCCCCC
Confidence 57777777776665444
No 182
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=27.76 E-value=2.1e+02 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 004161 730 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 767 (771)
Q Consensus 730 ~l~~~l~~~ld~~--a~~fv~~lWr~life~~~~~~gl~~ 767 (771)
+++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444443332 4679999999999999999887664
No 183
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=27.45 E-value=86 Score=28.94 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=35.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCH
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 106 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~ 106 (771)
..-||||+++..+.+.-...+...|+.-.-+-+..+ ....||+|.++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 344999999999998888788787766443434332 24459999988764
No 184
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=26.64 E-value=24 Score=34.74 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.7
Q ss_pred CccccCccCCCCCCcchhc
Q 004161 530 KRTAVPSVFHVEDDDDADK 548 (771)
Q Consensus 530 kr~~v~~vf~~~ddee~~~ 548 (771)
+..+|+.|||.+||+|..+
T Consensus 88 ~~~~va~~Fn~d~d~e~eE 106 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPEE 106 (150)
T ss_pred CcchhhhhhccccccChhh
Confidence 4678999999987776443
No 185
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=25.23 E-value=1.2e+02 Score=32.44 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEE-EeCCHHHHHHHHHHhCCceeCCeEEEEEEeh
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFC-EFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFV-eF~~~esA~~Al~~Lng~~I~Gr~L~V~~a~ 132 (771)
..-||||+|-...--...-..+..+-.-.+|.++.-......-|||.. .=.+.++...+|.+|.+..+-...+.|.-..
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 567999999886555444444444433345555543223333466633 3346666777777776655544555555555
Q ss_pred hhHHHH
Q 004161 133 ATREYL 138 (771)
Q Consensus 133 ~~k~~l 138 (771)
.++..+
T Consensus 117 GcQdi~ 122 (299)
T KOG4840|consen 117 GCQDIM 122 (299)
T ss_pred cchHHH
Confidence 555443
No 186
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=22.94 E-value=60 Score=31.36 Aligned_cols=20 Identities=50% Similarity=0.863 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004161 356 REREREKERQYEKEKEKERER 376 (771)
Q Consensus 356 RER~r~~~r~~ekerere~er 376 (771)
||..+++.|++ +||||.+|+
T Consensus 27 RetSrERSRdR-rEReRsRE~ 46 (146)
T PF11671_consen 27 RETSRERSRDR-RERERSRER 46 (146)
T ss_pred HHhhhhhhhhh-hhhhhhccc
Confidence 44444334444 444444443
No 187
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=22.92 E-value=1.1e+02 Score=30.83 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=45.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHH
Q 004161 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (771)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~ 114 (771)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4457789999999999999999999999999777665553333344555555544444444443
No 188
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=21.99 E-value=69 Score=35.56 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHhcCCeeEEE
Q 004161 66 ADSDFVLSVLKVCGTVKSWK 85 (771)
Q Consensus 66 vte~~Lr~lFs~~G~V~s~k 85 (771)
+....|.+||.++-.|.-|.
T Consensus 81 tyhevideIyyqVkHvEPWe 100 (453)
T KOG2888|consen 81 TYHEVIDEIYYQVKHVEPWE 100 (453)
T ss_pred hHHHHHHHHHHHHhccCchh
Confidence 33456667777766666664
No 189
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.53 E-value=3e+02 Score=29.62 Aligned_cols=8 Identities=63% Similarity=0.630 Sum_probs=5.2
Q ss_pred ChHHHhhh
Q 004161 561 STEELQAA 568 (771)
Q Consensus 561 ~~ee~~~~ 568 (771)
+.+++.||
T Consensus 258 S~eEl~AV 265 (299)
T KOG3054|consen 258 SMEELAAV 265 (299)
T ss_pred cHHHHHHH
Confidence 77776544
No 190
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=1.7e+02 Score=33.45 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=43.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeccCCCCCCceeEEEEeCCHHHHHHHHHH
Q 004161 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (771)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~sGk~kgfGFVeF~~~esA~~Al~~ 115 (771)
.+-|-|-+.|...-..+|..+|..|| .-..++++-+ .++|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 35567778888777788888899886 3456666666 4899999999999999984
No 191
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.13 E-value=3.3e+02 Score=24.22 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=43.7
Q ss_pred hhhHHHHHHHhhCcchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004161 696 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 755 (771)
Q Consensus 696 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~ld~~a~~fv~~lWr~li 755 (771)
.+=+..++..+|-..|-.-+-+.++.-..+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888899666655555556666667799999999999999999855444445554
Done!