Query 004163
Match_columns 771
No_of_seqs 168 out of 214
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 16:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4bbr_M Transcription initiatio 98.1 1.6E-05 5.4E-10 86.1 12.4 146 170-408 132-289 (345)
2 3k7a_M Transcription initiatio 97.8 5.6E-05 1.9E-09 81.5 10.4 106 260-408 172-289 (345)
3 1ais_B TFB TFIIB, protein (tra 96.0 0.11 3.8E-06 50.9 14.5 150 161-408 11-162 (200)
4 1c9b_A General transcription f 95.7 0.26 8.9E-06 48.6 15.8 144 172-408 13-156 (207)
5 1zp2_A RNA polymerase II holoe 94.7 1.6 5.3E-05 44.0 18.0 154 171-408 35-188 (235)
6 1nui_A DNA primase/helicase; z 92.5 0.049 1.7E-06 55.7 2.5 33 5-37 9-42 (255)
7 1pft_A TFIIB, PFTFIIBN; N-term 92.3 0.085 2.9E-06 41.4 3.1 32 9-40 4-36 (50)
8 3rgf_B Cyclin-C; protein kinas 91.4 7.2 0.00025 40.5 17.4 167 172-417 51-218 (285)
9 2i53_A Cyclin K; cell cycle, t 89.9 13 0.00045 37.5 17.5 156 174-408 51-209 (258)
10 1vq8_Z 50S ribosomal protein L 89.1 0.16 5.5E-06 44.5 2.1 31 10-40 27-57 (83)
11 2b9r_A Human cyclin B1; cell c 89.1 5.6 0.00019 40.9 14.1 121 259-424 83-204 (269)
12 2ivx_A Cyclin-T2; transcriptio 88.7 14 0.00048 37.3 16.7 158 174-408 41-201 (257)
13 1dl6_A Transcription factor II 88.6 0.26 9E-06 40.2 2.9 31 10-40 11-42 (58)
14 3j20_Y 30S ribosomal protein S 85.6 0.46 1.6E-05 37.8 2.7 29 10-38 19-47 (50)
15 3k1f_M Transcription initiatio 84.1 0.58 2E-05 46.5 3.2 35 6-40 17-54 (197)
16 1jkw_A Cyclin H; cell cycle, c 83.6 26 0.0009 37.0 16.1 150 173-408 66-224 (323)
17 1qyp_A RNA polymerase II; tran 83.4 0.71 2.4E-05 37.1 2.9 32 8-39 13-54 (57)
18 2pk2_A Cyclin-T1, protein TAT; 82.2 8.6 0.00029 41.5 11.8 157 174-408 48-208 (358)
19 2k4x_A 30S ribosomal protein S 81.8 1 3.6E-05 36.4 3.3 28 10-37 18-45 (55)
20 2akl_A PHNA-like protein PA012 79.1 0.96 3.3E-05 42.8 2.6 29 10-39 27-55 (138)
21 2cch_B Cyclin A2, cyclin-A; co 76.2 10 0.00035 38.6 9.6 121 259-423 84-206 (260)
22 3j21_g 50S ribosomal protein L 73.9 1.1 3.7E-05 36.0 1.2 25 10-38 14-38 (51)
23 1tfi_A Transcriptional elongat 71.1 2.3 7.7E-05 33.8 2.5 34 5-38 4-47 (50)
24 2jr6_A UPF0434 protein NMA0874 68.7 3.1 0.00011 35.1 3.0 31 9-39 7-37 (68)
25 2pk7_A Uncharacterized protein 68.5 2.8 9.7E-05 35.4 2.7 31 9-39 7-37 (69)
26 2js4_A UPF0434 protein BB2007; 68.5 2.9 0.0001 35.4 2.8 31 9-39 7-37 (70)
27 2hf1_A Tetraacyldisaccharide-1 68.3 3.1 0.00011 35.1 2.9 30 10-39 8-37 (68)
28 2jny_A Uncharacterized BCR; st 67.4 4.5 0.00015 34.1 3.7 32 8-39 8-39 (67)
29 3j21_i 50S ribosomal protein L 66.2 3.2 0.00011 36.4 2.6 31 10-40 35-65 (83)
30 3iz5_m 60S ribosomal protein L 64.4 3.6 0.00012 36.7 2.7 30 11-40 37-66 (92)
31 3h0g_I DNA-directed RNA polyme 63.9 4 0.00014 37.3 3.0 28 12-39 6-37 (113)
32 3jyw_9 60S ribosomal protein L 63.8 3.4 0.00012 35.3 2.3 31 10-40 26-56 (72)
33 3izc_m 60S ribosomal protein R 62.7 4 0.00014 36.5 2.6 31 10-40 36-66 (92)
34 4a17_Y RPL37A, 60S ribosomal p 61.0 3.8 0.00013 37.3 2.2 30 11-40 37-66 (103)
35 2w96_A G1/S-specific cyclin-D1 60.7 54 0.0018 33.4 11.1 109 259-408 102-215 (271)
36 3cc2_Z 50S ribosomal protein L 60.5 3.8 0.00013 38.0 2.1 30 10-40 60-90 (116)
37 3u50_C Telomerase-associated p 54.5 5.9 0.0002 39.0 2.5 27 10-37 42-68 (172)
38 1gnf_A Transcription factor GA 54.4 3.5 0.00012 32.3 0.7 27 10-36 4-33 (46)
39 1ffk_W Ribosomal protein L37AE 52.8 6.3 0.00021 33.8 2.1 31 10-40 27-57 (73)
40 2vut_I AREA, nitrogen regulato 51.0 4.7 0.00016 31.1 0.9 27 11-37 2-31 (43)
41 1twf_I B12.6, DNA-directed RNA 50.4 6.5 0.00022 36.4 2.0 29 11-39 5-37 (122)
42 4gat_A Nitrogen regulatory pro 48.8 6.9 0.00024 32.8 1.7 30 9-38 8-40 (66)
43 3qt1_I DNA-directed RNA polyme 47.3 7.7 0.00026 36.6 2.0 29 11-39 25-57 (133)
44 3dfx_A Trans-acting T-cell-spe 46.8 5 0.00017 33.5 0.5 33 7-39 4-39 (63)
45 4hc9_A Trans-acting T-cell-spe 45.1 6.3 0.00021 36.3 1.0 29 8-36 3-34 (115)
46 1g3n_C V-cyclin; cyclin-depend 43.4 43 0.0015 33.9 7.0 110 259-408 96-209 (257)
47 1twf_I B12.6, DNA-directed RNA 39.8 18 0.00061 33.4 3.1 30 10-39 72-111 (122)
48 2f2c_A Cyclin homolog, V-cycli 39.4 67 0.0023 32.4 7.7 110 259-408 97-210 (254)
49 1c9b_A General transcription f 38.7 1.4E+02 0.0048 28.8 9.6 51 259-309 144-194 (207)
50 3irb_A Uncharacterized protein 38.4 11 0.00037 35.8 1.5 31 4-38 41-71 (145)
51 1twf_L ABC10-alpha, DNA-direct 37.0 11 0.00038 31.9 1.2 25 11-36 29-53 (70)
52 1l1o_C Replication protein A 7 36.4 20 0.00068 35.0 3.0 29 10-39 43-73 (181)
53 3cng_A Nudix hydrolase; struct 33.8 22 0.00075 33.9 2.8 26 11-36 4-33 (189)
54 2gnr_A Conserved hypothetical 30.7 16 0.00054 34.8 1.2 30 4-37 41-70 (145)
55 1gh9_A 8.3 kDa protein (gene M 29.7 27 0.00091 29.7 2.3 27 11-39 5-31 (71)
56 2kae_A GATA-type transcription 29.6 14 0.00049 31.4 0.6 30 8-38 6-40 (71)
57 1vtn_C HNF-3/FORK head DNA-rec 28.4 38 0.0013 30.5 3.2 45 256-304 4-49 (102)
58 4esj_A Type-2 restriction enzy 26.6 29 0.001 35.9 2.4 30 10-39 34-67 (257)
59 4hc9_A Trans-acting T-cell-spe 26.4 22 0.00074 32.7 1.3 31 8-38 57-90 (115)
60 2kpi_A Uncharacterized protein 24.5 62 0.0021 26.1 3.5 31 7-39 7-39 (56)
61 4gop_C Putative uncharacterize 23.9 34 0.0012 37.6 2.6 29 10-39 308-338 (444)
62 1vk6_A NADH pyrophosphatase; 1 23.0 39 0.0013 34.9 2.6 30 10-39 107-136 (269)
63 3bpy_A FORK head domain, forkh 22.8 57 0.0019 28.4 3.2 39 255-294 5-44 (85)
64 3l2c_A Forkhead box protein O4 22.5 56 0.0019 29.8 3.2 42 253-295 22-64 (110)
65 1dxg_A Desulforedoxin; non-hem 22.4 30 0.001 25.4 1.1 15 26-40 4-18 (36)
66 3h0g_L DNA-directed RNA polyme 22.2 39 0.0013 28.2 1.9 28 10-38 21-48 (63)
67 3o9x_A Uncharacterized HTH-typ 21.9 37 0.0013 30.5 2.0 29 12-40 4-48 (133)
68 2fiy_A Protein FDHE homolog; F 21.4 40 0.0014 35.9 2.3 9 28-36 222-230 (309)
69 3h0g_I DNA-directed RNA polyme 21.2 64 0.0022 29.2 3.4 29 11-39 73-111 (113)
70 1x0t_A Ribonuclease P protein 21.1 54 0.0019 30.1 2.9 34 5-39 60-105 (120)
71 3g33_B CCND3 protein; Ser/Thr 20.5 89 0.003 32.7 4.8 78 325-408 148-229 (306)
72 2xzm_9 RPS31E; ribosome, trans 20.3 46 0.0016 33.1 2.4 29 10-38 113-141 (189)
73 1k81_A EIF-2-beta, probable tr 20.3 45 0.0015 24.6 1.7 27 12-38 2-31 (36)
No 1
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.10 E-value=1.6e-05 Score=86.10 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHH
Q 004163 170 QCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYK 249 (771)
Q Consensus 170 Q~~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wpr 249 (771)
.+..+...+|+|..+......|+.+++...-. .|++..
T Consensus 132 ~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~-------------------------------------rGrs~e----- 169 (345)
T 4bbr_M 132 KITMLCDAAELPKIVKDCAKEAYKLCHDEKTL-------------------------------------KGKSME----- 169 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTT-------------------------------------TTCCHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc-------------------------------------cCCCHH-----
Confidence 44667788999999999999888776542100 011111
Q ss_pred HHhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHH
Q 004163 250 LLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLE 329 (771)
Q Consensus 250 llr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~ 329 (771)
. ..-|-+|+||..-+.|.++-||.....-..- .|-
T Consensus 170 ~--------vaAAclYiACR~~~~prtl~eI~~~~~v~~k-------------------------------------eig 204 (345)
T 4bbr_M 170 S--------IMAASILIGCRRAEVARTFKEIQSLIHVKTK-------------------------------------EFG 204 (345)
T ss_dssp H--------HHHHHHHHHHHHTCCBCCHHHHHHHHTCCTT-------------------------------------HHH
T ss_pred H--------HHHHHHHHHHHhcCCCccHHHHHHHhCCCHH-------------------------------------HHH
Confidence 1 3458899999999999999999886642211 222
Q ss_pred HHHHHHHHHhCC------------CCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHH
Q 004163 330 SFAASIAESIGL------------HLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCV 397 (771)
Q Consensus 330 ~la~~la~~~gL------------~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~L 397 (771)
+....+.+.+++ .+|++....++.||+..|+||.+ +...+.+|++......+ ...+-|. ..+
T Consensus 205 r~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~-v~~~A~~i~~~~~~~~i----~~GR~P~-~IA 278 (345)
T 4bbr_M 205 KTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCKEIKE----IAGKSPI-TIA 278 (345)
T ss_dssp HHHHHHHHCC----------------------------------------------------------------------
T ss_pred HHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHhccc----ccCCChH-HHH
Confidence 222333333333 36788888999999999999998 77777777763222111 1124576 777
Q ss_pred HHHHHHHHHHh
Q 004163 398 MSILIVSIRIL 408 (771)
Q Consensus 398 mA~IIVAlKLL 408 (771)
.|+|.+|.++.
T Consensus 279 AAaIylAa~l~ 289 (345)
T 4bbr_M 279 VVSIYLNILLF 289 (345)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 88888888763
No 2
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=97.82 E-value=5.6e-05 Score=81.54 Aligned_cols=106 Identities=10% Similarity=0.101 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHh
Q 004163 260 SLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESI 339 (771)
Q Consensus 260 TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~~~ 339 (771)
..|-+|+||..-+.|.++-||..-.. ++- +.|.+.-..+.+.+
T Consensus 172 aaAclyiAcR~e~~prtl~ei~~~~~---v~~----------------------------------keIgr~~~~l~~~L 214 (345)
T 3k7a_M 172 MAASILIGCRRAEVARTFKEIQSLIH---VKT----------------------------------KEFGKTLNIMKNIL 214 (345)
T ss_dssp HTTTTTTTSBTTBSSCCHHHHHHSSS---CCS----------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHC---CCH----------------------------------HHHHHHHHHHHHHH
Confidence 45678999999999999999977543 110 12322223333333
Q ss_pred C------------CCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHH
Q 004163 340 G------------LHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRI 407 (771)
Q Consensus 340 g------------L~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKL 407 (771)
+ +.+|++....++.||+..|+|+.+ +...+.+|++......+. ...-|. ..+.|+|.+|.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~-v~~~A~~i~~~~~~~~l~----~Gr~P~-~IAaAaIylAa~~ 288 (345)
T 3k7a_M 215 RGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ-VTTSAEYTAKKCKEIKEI----AGKSPI-TIAVVSIYLNILL 288 (345)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred hhhhccccccccccccCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHhchh----cCCCHH-HHHHHHHHHHHHH
Confidence 3 667778888999999999999988 777777887633222111 124466 7777888888776
Q ss_pred h
Q 004163 408 L 408 (771)
Q Consensus 408 L 408 (771)
+
T Consensus 289 ~ 289 (345)
T 3k7a_M 289 F 289 (345)
T ss_dssp -
T ss_pred H
Confidence 3
No 3
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.02 E-value=0.11 Score=50.93 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccc
Q 004163 161 MGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHG 240 (771)
Q Consensus 161 e~fQlILrkQ~~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~ 240 (771)
+|+.+|- .+...+|+|+........+-.+++..... .|
T Consensus 11 ~a~~~I~-----~~~~~L~L~~~v~~~A~~l~~~~~~~~~~-------------------------------------~g 48 (200)
T 1ais_B 11 FALSELD-----RITAQLKLPRHVEEEAARLYREAVRKGLI-------------------------------------RG 48 (200)
T ss_dssp HHHHHHH-----HHHHHHTCCHHHHHHHHHHHHHHHTTTTT-------------------------------------TT
T ss_pred HHHHHHH-----HHHHHcCCCHHHHHHHHHHHHHHHhCCCc-------------------------------------CC
Confidence 5555553 44566799999998888888777653110 01
Q ss_pred hhhHHHHHHHHhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCC
Q 004163 241 QRAVMIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPS 320 (771)
Q Consensus 241 kRk~~~wprllr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~ 320 (771)
+ . +.. -..|-+|+||...+.|.++-||..-.. +
T Consensus 49 r-~----~~~--------vaaAclylAcr~~~~p~~l~di~~~~~---v------------------------------- 81 (200)
T 1ais_B 49 R-S----IES--------VMAACVYAACRLLKVPRTLDEIADIAR---V------------------------------- 81 (200)
T ss_dssp C-C----HHH--------HHHHHHHHHHHHHTCCCCHHHHHHHTT---S-------------------------------
T ss_pred C-C----HHH--------HHHHHHHHHHHHcCCCCCHHHHHHHHC---C-------------------------------
Confidence 0 0 111 466889999999999999999986421 0
Q ss_pred CCCchHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHH
Q 004163 321 KSVPSQKLESFAASIAESIGLHLPP--VNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVM 398 (771)
Q Consensus 321 ~l~s~~~I~~la~~la~~~gL~fPp--iN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~Lm 398 (771)
+...|.+.-..+.+.+++.+|+ ++...++.||+..|+||.+ +...+.+|++......+. ...-|. ..+.
T Consensus 82 ---~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~-v~~~A~~i~~~~~~~~~~----~gr~P~-~iAa 152 (200)
T 1ais_B 82 ---DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK-VRRRAIEILDEAYKRGLT----SGKSPA-GLVA 152 (200)
T ss_dssp ---CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH-HHHHHHHHHHHHHHTTCC----TTSCHH-HHHH
T ss_pred ---CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHcCcc----cCCCHH-HHHH
Confidence 0135556666677788999998 8999999999999999999 788888888733222111 124466 7888
Q ss_pred HHHHHHHHHh
Q 004163 399 SILIVSIRIL 408 (771)
Q Consensus 399 A~IIVAlKLL 408 (771)
|+|-+|.+++
T Consensus 153 Aaly~A~~~~ 162 (200)
T 1ais_B 153 AALYIASLLE 162 (200)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888888873
No 4
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.72 E-value=0.26 Score=48.63 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=101.9
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHHH
Q 004163 172 EALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLL 251 (771)
Q Consensus 172 ~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprll 251 (771)
..+-..+|+|+........+-.|++....+.. + . +..
T Consensus 13 ~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~-------------------------------------~-~----~~~- 49 (207)
T 1c9b_A 13 TTMADRINLPRNIVDRTNNLFKQVYEQKSLKG-------------------------------------R-A----NDA- 49 (207)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTT-------------------------------------S-C----HHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCC-------------------------------------C-C----HHH-
Confidence 34556789999999888888888876422110 0 0 111
Q ss_pred hhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHH
Q 004163 252 RQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESF 331 (771)
Q Consensus 252 r~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~l 331 (771)
-..|-+||||..-..|.++.||..-.. + +...|.+.
T Consensus 50 -------v~aaclylAcK~ee~p~~l~di~~~~~---~----------------------------------~~~~i~~~ 85 (207)
T 1c9b_A 50 -------IASACLYIACRQEGVPRTFKEICAVSR---I----------------------------------SKKEIGRC 85 (207)
T ss_dssp -------HHHHHHHHHHHHTTCCCCHHHHHHTSS---S----------------------------------CHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCCCCCHHHHHHHHC---C----------------------------------CHHHHHHH
Confidence 567889999999999999999975332 0 01344445
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 332 AASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 332 a~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
-..+.+.+++.+|..+....+.||+..|+||.+ +...+..+++......+. ...-|. ..+.|+|-+|.+++
T Consensus 86 ~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~-~~~~A~~i~~~~~~~~l~----~g~~P~-~IAaAaiylA~~~~ 156 (207)
T 1c9b_A 86 FKLILKALETSVDLITTGDFMSRFCSNLCLPKQ-VQMAATHIARKAVELDLV----PGRSPI-SVAAAAIYMASQAS 156 (207)
T ss_dssp HHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHTTCS----TTCCHH-HHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHcCcc----CCCChH-HHHHHHHHHHHHHH
Confidence 556677788888889999999999999999998 788888888744332221 123455 88888888888875
No 5
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=94.68 E-value=1.6 Score=43.99 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=107.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHH
Q 004163 171 CEALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKL 250 (771)
Q Consensus 171 ~~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprl 250 (771)
+..+...+++|++.-...-.+-.|++....+.. + +. +.
T Consensus 35 i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~------------------------------------~-~~----~~- 72 (235)
T 1zp2_A 35 VQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEK------------------------------------G-FS----LE- 72 (235)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCC------------------------------------C-CC----HH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhccccc------------------------------------c-cC----HH-
Confidence 334456789999999888888888877532111 0 00 11
Q ss_pred HhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHH
Q 004163 251 LRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLES 330 (771)
Q Consensus 251 lr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~ 330 (771)
+ -..|-+||||-.-..|..+.||+.-... -. | + . + ..+.+.|..
T Consensus 73 l-------v~~acL~lA~K~Ee~~~~l~d~~~~~~~-~~---------~----~--------~---~----~~~~~~I~~ 116 (235)
T 1zp2_A 73 A-------LVATCIYLSCKVEECPVHIRTICNEAND-LW---------S----L--------K---V----KLSRSNISE 116 (235)
T ss_dssp H-------HHHHHHHHHHHHTTCCCCHHHHHHHHHT-TC---------C----C--------S---S----CCCHHHHHH
T ss_pred H-------HHHHHHHHHhccccCcccHHHHHHHHHH-Hc---------c----c--------h---h----hccHHHHHH
Confidence 1 5678899999999999999999864322 11 1 0 0 0 112367888
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 331 FAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 331 la~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
+=..+.+.++..+..++....+.||++.++++.+ +...+..+++-++-.... ..+|+.+.++|+|.+|.+++
T Consensus 117 ~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~-~~~~A~~~l~~s~~~~~~-----l~~~Ps~IAaAai~lA~~~~ 188 (235)
T 1zp2_A 117 IEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQK-QLEFAWSIVNDSYASSLC-----LMAHPHQLAYAALLISCCND 188 (235)
T ss_dssp HHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHH-HHHHHHHHHHHHTTTTGG-----GTSCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHcCCch-----hccCHHHHHHHHHHHHHHhc
Confidence 7777888888888888888999999999999998 788888888744333222 23344488889999998863
No 6
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=92.52 E-value=0.049 Score=55.70 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=26.8
Q ss_pred cccccccccCCCCC-CceeecCCcceecccCCee
Q 004163 5 EGDIRRLKCKKCDN-VGFECAYDGFYYCTHCNAL 37 (771)
Q Consensus 5 ~~~~r~~~C~~C~S-~~w~~~ddG~~yC~~CGhv 37 (771)
..+.++.+|+.||+ ..+++-+||-++|-+||+-
T Consensus 9 ~~~~~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 9 SVFLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp -CEEEEECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cceecCCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 56788999999999 4565547899999999985
No 7
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=92.29 E-value=0.085 Score=41.36 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=26.0
Q ss_pred cccccCCCCC-CceeecCCcceecccCCeeecc
Q 004163 9 RRLKCKKCDN-VGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 9 r~~~C~~C~S-~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
...+|++|++ ..-++...|...|..||.+.+.
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 3568999999 4445557899999999999874
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=91.38 E-value=7.2 Score=40.51 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=107.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHHH
Q 004163 172 EALVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLL 251 (771)
Q Consensus 172 ~aLV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprll 251 (771)
..+...+++|++.-...-.+..||+....+... . +. +
T Consensus 51 ~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~--------------------------------------~----~~-l 87 (285)
T 3rgf_B 51 QALGEHLKLRQQVIATATVYFKRFYARYSLKSI--------------------------------------D----PV-L 87 (285)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTS--------------------------------------C----HH-H
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhc--------------------------------------C----HH-H
Confidence 334457899999988888899888875322110 0 11 1
Q ss_pred hhcCCccchHHHHHHHHHHhhccc-ChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHH
Q 004163 252 RQKIPLSSSLAISFLACHVVREAI-LPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLES 330 (771)
Q Consensus 252 r~~Lp~~~TLAI~YLAcl~LR~PV-~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~ 330 (771)
..+|-+||||-.--.|. .+.||+.-... +.+ .+.. . +.+.. + ..+.+.|..
T Consensus 88 -------va~acLfLA~K~EE~~~~~~~di~~~~~~-----------~~k---~~~~-~-~~~~~-~----~~~~~~Il~ 139 (285)
T 3rgf_B 88 -------MAPTCVFLASKVEEFGVVSNTRLIAAATS-----------VLK---TRFS-Y-AFPKE-F----PYRMNHILE 139 (285)
T ss_dssp -------HHHHHHHHHHHHTTSCCCCHHHHHHHHHH-----------HHH---HHCT-T-TCCSC-C----CCCHHHHHH
T ss_pred -------HHHHHHHHHHhhhccccccHHHHHHHHHH-----------HHc---cccc-c-cCchh-h----HHHHHHHHH
Confidence 56788999999988887 67888764321 000 0000 0 00110 0 123467888
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHhhc
Q 004163 331 FAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYN 410 (771)
Q Consensus 331 la~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLLfg 410 (771)
+=..+.+.++..+...+..-.+.+|++.|+++.+ +...+..+++-++-.... ..+|+.+.++|+|.+|.+++ +
T Consensus 140 ~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~-~~~~A~~~l~~sl~t~~~-----l~~~Ps~IAaAaiylA~~~~-~ 212 (285)
T 3rgf_B 140 CEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLC-----LLYPPFMIALACLHVACVVQ-Q 212 (285)
T ss_dssp HHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHH-HHHHHHHHHHHHTTSSHH-----HHSCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHccChh-----hccCHHHHHHHHHHHHHHHc-C
Confidence 7777888888877666778899999999999888 788888887744322222 23444488888888888864 4
Q ss_pred cCCcchh
Q 004163 411 INGFGAW 417 (771)
Q Consensus 411 LDg~~eW 417 (771)
.+. ..|
T Consensus 213 ~~~-~~W 218 (285)
T 3rgf_B 213 KDA-RQW 218 (285)
T ss_dssp CCC-HHH
T ss_pred CCh-hhH
Confidence 433 345
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=89.94 E-value=13 Score=37.45 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=102.4
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHHHhh
Q 004163 174 LVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQ 253 (771)
Q Consensus 174 LV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprllr~ 253 (771)
+...+++|++.-...-.+--||+....+... . +. +
T Consensus 51 v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~--------------------------------------~----~q-l-- 85 (258)
T 2i53_A 51 VGTRLGLHYDTLATGIIYFHRFYMFHSFKQF--------------------------------------P----RY-V-- 85 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTTSCTTTS--------------------------------------C----HH-H--
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhCChhhc--------------------------------------C----HH-H--
Confidence 4457899998888888888888764321100 0 11 2
Q ss_pred cCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHH
Q 004163 254 KIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAA 333 (771)
Q Consensus 254 ~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~ 333 (771)
-.+|-+||||-.-..|..+.||+.-... .+....-... . -.+.+.|..+=.
T Consensus 86 -----v~~acL~lA~K~eE~~~~l~d~~~~~~~----------~~~~~~~~~~----------~----~~~~~~i~~~E~ 136 (258)
T 2i53_A 86 -----TGACCLFLAGKVEETPKKCKDIIKTARS----------LLNDVQFGQF----------G----DDPKEEVMVLER 136 (258)
T ss_dssp -----HHHHHHHHHHHHTTCCCCHHHHHHHHHH----------HSCHHHHGGG----------C----SCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHccccccccHHHHHHHHHH----------Hhchhhhhhh----------h----hhHHHHHHHHHH
Confidence 5678899999998899999999874321 0000000000 0 012357777777
Q ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHcCCChh---hhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 334 SIAESIGLHLPPVNFYALASRYLKQLCLPLG---KILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 334 ~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E---~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
.+.+.++..+...+....+.+|++.|+++.+ .+...+..+++.++-.... ..+|+.+.++|+|.+|.+++
T Consensus 137 ~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~-----l~~~Ps~IAaAai~lA~~~~ 209 (258)
T 2i53_A 137 ILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLS-----LQWEPEIIAVAVMYLAGRLC 209 (258)
T ss_dssp HHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGG-----GTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCch-----hccChHHHHHHHHHHHHHHh
Confidence 7788888888778888999999999999873 1666777777644333222 23444488899999998875
No 10
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=89.09 E-value=0.16 Score=44.51 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=26.0
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|++||...-.....|.|.|.+||+++.|
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 4579999997654448999999999999887
No 11
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=89.06 E-value=5.6 Score=40.88 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 004163 259 SSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAE 337 (771)
Q Consensus 259 ~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~ 337 (771)
-.+|-+||||-.--. |..+.||+... .+ ..+.+.|.++=..+.+
T Consensus 83 v~~acL~iA~K~eE~~~p~~~d~~~~~-~~----------------------------------~~~~~eI~~mE~~IL~ 127 (269)
T 2b9r_A 83 VGVTAMFIASKYEEMYPPEIGDFAFVT-DN----------------------------------TYTKHQIRQMEMKILR 127 (269)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHT-CS----------------------------------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHh-cC----------------------------------CCCHHHHHHHHHHHHH
Confidence 567789999988665 77888887431 11 1223678888888888
Q ss_pred HhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHhhccCCcchh
Q 004163 338 SIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAW 417 (771)
Q Consensus 338 ~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLLfgLDg~~eW 417 (771)
.++..+.+++..-++.||++.++++.+ +...+..+++.++-..... ..-|. +.++|+|.+|.+++ + ...|
T Consensus 128 ~L~f~l~~~tp~~fl~~~~~~~~~~~~-~~~~a~~l~e~sl~~~~~~----~~~Ps-~iAaAai~lA~~~l-~---~~~w 197 (269)
T 2b9r_A 128 ALNFGLGRPLPLHFLRRASKIGEVDVE-QHTLAKYLMELTMLDYDMV----HFPPS-QIAAGAFSLALKIL-D---NGEW 197 (269)
T ss_dssp HTTSCCCCCCHHHHHHHHHHSSCCCHH-HHHHHHHHHHHGGGCGGGS----SSCTT-HHHHHHHHHHHHHH-T---CCCS
T ss_pred HcCCccCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhhhhh----cCCHH-HHHHHHHHHHHHHh-C---CCCC
Confidence 888888778888999999999999988 8888888887554322221 13455 88888888888875 2 2368
Q ss_pred hhhcccc
Q 004163 418 EKSLSSR 424 (771)
Q Consensus 418 e~sLs~~ 424 (771)
...|...
T Consensus 198 ~~~l~~~ 204 (269)
T 2b9r_A 198 TPTLQHY 204 (269)
T ss_dssp CTTHHHH
T ss_pred CHHHHHH
Confidence 7766544
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.73 E-value=14 Score=37.30 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=102.8
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHHHhh
Q 004163 174 LVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQ 253 (771)
Q Consensus 174 LV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprllr~ 253 (771)
+...+++|++.-...-.+--||+....+.. +. +. +
T Consensus 41 v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~--------------------------------------~~----~q-l-- 75 (257)
T 2ivx_A 41 MGQRLNVSQLTINTAIVYMHRFYMHHSFTK--------------------------------------FN----KN-I-- 75 (257)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTTSCTTT--------------------------------------SC----HH-H--
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhhCChhh--------------------------------------hC----HH-H--
Confidence 446789999888888888888876432110 00 11 2
Q ss_pred cCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCc--hHHHHHH
Q 004163 254 KIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVP--SQKLESF 331 (771)
Q Consensus 254 ~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s--~~~I~~l 331 (771)
-.+|-+||||-.-..|..+.||+.-+..-.-| ..|+. . .....+. .+.|..+
T Consensus 76 -----v~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~--------------~~~~~--~-----~~~~~y~~~~~~I~~~ 129 (257)
T 2ivx_A 76 -----ISSTALFLAAKVEEQARKLEHVIKVAHACLHP--------------LEPLL--D-----TKCDAYLQQTRELVIL 129 (257)
T ss_dssp -----HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCT--------------TSCCC--C-----TTSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhccccCCcCHHHHHHHHHHHhcc--------------CCCCC--C-----cchHHHHHHHHHHHHH
Confidence 57788999999998999999998654320000 00000 0 0000111 3567777
Q ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccC-CccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 332 AASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSM-PPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 332 a~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~-p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
=..+.+.++..+...+....+.||++.++++.+ +...+..+++.++ .... ...+|+.+.++|+|.+|.+++
T Consensus 130 E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~A~~~~~~sl~~~~~-----~l~~~Ps~IAaAai~lA~~~~ 201 (257)
T 2ivx_A 130 ETIMLQTLGFEITIEHPHTDVVKCTQLVRASKD-LAQTSYFMATNSLHLTTF-----CLQYKPTVIACVCIHLACKWS 201 (257)
T ss_dssp HHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHCCG-----GGTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccceEeeCcHHHHHHHHHHhCCCcH-HHHHHHHHHHhhhhcccH-----HHcCCHHHHHHHHHHHHHHHh
Confidence 777788888888778888999999999999988 7777777765332 1111 123444488888899998875
No 13
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=88.61 E-value=0.26 Score=40.22 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=25.2
Q ss_pred ccccCCCCCCce-eecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGF-ECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w-~~~ddG~~yC~~CGhv~Eg 40 (771)
..+|+.|++... .+...|-.+|..||.|++.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 357999999554 4457899999999999975
No 14
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.63 E-value=0.46 Score=37.80 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=24.2
Q ss_pred ccccCCCCCCceeecCCcceecccCCeee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALD 38 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~ 38 (771)
..-|++||+..+-....++++|..||...
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 46699999988766688999999999753
No 15
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=84.05 E-value=0.58 Score=46.46 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=26.9
Q ss_pred ccccccccCCCCCC--c-eeecCCcceecccCCeeecc
Q 004163 6 GDIRRLKCKKCDNV--G-FECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 6 ~~~r~~~C~~C~S~--~-w~~~ddG~~yC~~CGhv~Eg 40 (771)
......+|+.|++. . -.+...|-++|..||-|++.
T Consensus 17 ~ln~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLEE 54 (197)
T 3k1f_M 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (197)
T ss_dssp CCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCC
T ss_pred ccccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcCC
Confidence 33455689999983 2 34458999999999999975
No 16
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=83.63 E-value=26 Score=37.03 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=96.3
Q ss_pred HHHHhcC--CChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHH
Q 004163 173 ALVDKFN--VCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKL 250 (771)
Q Consensus 173 aLV~~~G--~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprl 250 (771)
.+...++ +|++.-...-.+..||+....+... . +.+
T Consensus 66 ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~--------------------------------------~----~~l 103 (323)
T 1jkw_A 66 EFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEY--------------------------------------H----PRI 103 (323)
T ss_dssp HHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTS--------------------------------------C----HHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhc--------------------------------------C----HHH
Confidence 3445678 9999988888888888774321110 0 112
Q ss_pred HhhcCCccchHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHH
Q 004163 251 LRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLES 330 (771)
Q Consensus 251 lr~~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~ 330 (771)
..+|-+||||-.=..|+.+.||+.-+... | ... -.....|..
T Consensus 104 --------va~acLfLA~K~EE~~~~l~d~v~~~~~~--p---------~~~-------------------~~~~~~Il~ 145 (323)
T 1jkw_A 104 --------IMLTCAFLACKVDEFNVSSPQFVGNLRES--P---------LGQ-------------------EKALEQILE 145 (323)
T ss_dssp --------HHHHHHHHHHHHTTCCCCHHHHGGGSSSC--H---------HHH-------------------HHHHHHHHH
T ss_pred --------HHHHHHHHHHhhhcCCCCHHHHHHHhccC--h---------hhh-------------------HHHHHHHHH
Confidence 57788999999999999999997632110 1 000 011256777
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC--ChhhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHH
Q 004163 331 FAASIAESIGLHLPPVNFYALASRYLKQL-----CL--PLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIV 403 (771)
Q Consensus 331 la~~la~~~gL~fPpiN~~lLl~Ryl~eL-----~L--P~E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIV 403 (771)
+=..+.+.++..+...+....+.+|+..+ ++ |.+ +...+..+++-++-.... ..+|+.+.++|+|.+
T Consensus 146 ~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~-l~~~A~~~l~~sl~t~~~-----l~~~Ps~IAaAai~l 219 (323)
T 1jkw_A 146 YELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEI-LRKTADDFLNRIALTDAY-----LLYTPSQIALTAILS 219 (323)
T ss_dssp HHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHH-HHHHHHHHHHHHTTSTHH-----HHSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHhccHH-----HcCCHHHHHHHHHHH
Confidence 77777777887776667777788888776 23 445 666677777633322222 234444888888888
Q ss_pred HHHHh
Q 004163 404 SIRIL 408 (771)
Q Consensus 404 AlKLL 408 (771)
|.+++
T Consensus 220 A~~~~ 224 (323)
T 1jkw_A 220 SASRA 224 (323)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88865
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=83.38 E-value=0.71 Score=37.14 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=24.5
Q ss_pred ccccccCCCCCCc-------eeecCCc---ceecccCCeeec
Q 004163 8 IRRLKCKKCDNVG-------FECAYDG---FYYCTHCNALDD 39 (771)
Q Consensus 8 ~r~~~C~~C~S~~-------w~~~ddG---~~yC~~CGhv~E 39 (771)
.....|+.|+... |+..++| ||.|..|||.-.
T Consensus 13 ~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 13 TTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred ceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 3457899999975 3445677 799999999853
No 18
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=82.16 E-value=8.6 Score=41.50 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=97.5
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHhhcCcCCCCcccccccccccccccccCCCCcccCCCCCCccccchhhHHHHHHHHhh
Q 004163 174 LVDKFNVCPLICGVAASIWFRFLASTGLLSQGWADEAIVQSESQELAESKDFQPRAKYRDEPHTLHGQRAVMIWYKLLRQ 253 (771)
Q Consensus 174 LV~~~G~ppELe~VVrdLWlRyL~~s~v~~~~~a~~~l~~Se~~sE~e~~ssq~~as~~~e~~~~~~kRk~~~wprllr~ 253 (771)
+...++++++.-...-.+.-||+....+... . +. +
T Consensus 48 v~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~--------------------------------------~----~q-l-- 82 (358)
T 2pk2_A 48 MGQRLNVSQLTINTAIVYMHRFYMIQSFTRF--------------------------------------P----GN-S-- 82 (358)
T ss_dssp HHTTTTCCHHHHHHHHHHHHHHTTTSCTTTS--------------------------------------C----HH-H--
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcCCcccc--------------------------------------c----HH-H--
Confidence 3456789998888888888888764321100 0 11 2
Q ss_pred cCCccchHHHHHHHHHHhhcccChhHHHHHHhc---CCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHH
Q 004163 254 KIPLSSSLAISFLACHVVREAILPTDIVKWSIE---GKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLES 330 (771)
Q Consensus 254 ~Lp~~~TLAI~YLAcl~LR~PV~lsDLiRWI~e---g~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~ 330 (771)
..+|-+||||-.--.|..+.||+.-+.. ..-| +... . ...+. ...+.|..
T Consensus 83 -----va~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~----------------~~~~-~-~~~y~----~~~~~Il~ 135 (358)
T 2pk2_A 83 -----VAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQES----------------LPDT-R-SEAYL----QQVQDLVI 135 (358)
T ss_dssp -----HHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSC----------------CCCT-T-SHHHH----GGGTGGGT
T ss_pred -----HHHHHHHHHHhhccCCCCHHHHHHHHHHHhccccc----------------cccc-c-chhhh----HHHHHHHH
Confidence 5788899999999899999999864321 1100 0000 0 00000 00134555
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHHHHHHhhhccC-CccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 331 FAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILPRALKIQEWSM-PPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 331 la~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~~v~RL~~fs~-p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
+=..+.+.++..|...+....+.+|++.+.++.+ +...+..+++.++ ..... ..+|+.+.++|+|.+|.+++
T Consensus 136 ~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~-l~~~A~~ll~~sl~~t~l~-----l~y~Ps~IAaAAI~lA~~~l 208 (358)
T 2pk2_A 136 LESIILQTLGFELTIDHPHTHVVKCTQLVRASKD-LAQTSYFMATNSLHLTTFS-----LQYTPPVVACVCIHLACKWS 208 (358)
T ss_dssp HHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHH-HHHHHHHHHHHHTTTSCGG-----GTSCHHHHTTTTTTTHHHHT
T ss_pred HHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHhcCcch-----hccCHHHHHHHHHHHHHHHh
Confidence 5555566667666555666788999999999988 7777777776443 12212 23444488888888888875
No 19
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=81.75 E-value=1 Score=36.43 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=22.7
Q ss_pred ccccCCCCCCceeecCCcceecccCCee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNAL 37 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv 37 (771)
...|+.||+..+-....++++|..||..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCE
Confidence 5789999997763346789999999975
No 20
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=79.08 E-value=0.96 Score=42.78 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=25.9
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeec
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
-|.|++|.|.--|. +...|.|..|||.-.
T Consensus 27 lP~CP~C~seytYe-Dg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 27 LPPCPQCNSEYTYE-DGALLVCPECAHEWS 55 (138)
T ss_dssp SCCCTTTCCCCCEE-CSSSEEETTTTEEEC
T ss_pred CCCCCCCCCcceEe-cCCeEECCccccccC
Confidence 48999999998787 888999999999874
No 21
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=76.20 E-value=10 Score=38.58 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=84.3
Q ss_pred chHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 004163 259 SSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAE 337 (771)
Q Consensus 259 ~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~ 337 (771)
-.+|-+||||-.-.. |..+.||+.. .++ ..+.+.|.++=..+.+
T Consensus 84 v~~acl~iA~K~ee~~~~~~~d~~~i-~~~----------------------------------~~~~~~i~~mE~~iL~ 128 (260)
T 2cch_B 84 VGTAAMLLASKFEEIYPPEVAEFVYI-TDD----------------------------------TYTKKQVLRMEHLVLK 128 (260)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHH-TTS----------------------------------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHH-HcC----------------------------------CcCHHHHHHHHHHHHH
Confidence 567889999988776 8888888752 111 1123678888788888
Q ss_pred HhCCCCCCCCHHHHHHHHHHHcCCCh-hhhHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHhhccCCcch
Q 004163 338 SIGLHLPPVNFYALASRYLKQLCLPL-GKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGA 416 (771)
Q Consensus 338 ~~gL~fPpiN~~lLl~Ryl~eL~LP~-E~iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLLfgLDg~~e 416 (771)
.++..+.+++..-.+.+|+..++++. . +...+..+++.++-... ....+|+.+.++|+|.+|.+++=+ ..
T Consensus 129 ~L~~~l~~~tp~~fl~~~~~~l~~~~~~-~~~~a~~l~e~sl~~~~----~~~~~~Ps~iAaAai~lA~~~~~~----~~ 199 (260)
T 2cch_B 129 VLTFDLAAPTVNQFLTQYFLHQQPANCK-VESLAMFLGELSLIDAD----PYLKYLPSVIAGAAFHLALYTVTG----QS 199 (260)
T ss_dssp HTTTCCCCCCHHHHHHHHHTTCSSCCHH-HHHHHHHHHHHHHHCHH----HHTTSCHHHHHHHHHHHHHHHHHS----CC
T ss_pred HcCCccCCCCHHHHHHHHHHHcCCChHH-HHHHHHHHHHHHHHhHH----HHhCCCHHHHHHHHHHHHHHHhCC----Cc
Confidence 88888878889999999999999987 6 77777777774321111 012333438888888888887632 45
Q ss_pred hhhhccc
Q 004163 417 WEKSLSS 423 (771)
Q Consensus 417 We~sLs~ 423 (771)
|...|..
T Consensus 200 w~~~l~~ 206 (260)
T 2cch_B 200 WPESLIR 206 (260)
T ss_dssp SCHHHHH
T ss_pred chHHHHH
Confidence 7655543
No 22
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.94 E-value=1.1 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.5
Q ss_pred ccccCCCCCCceeecCCcceecccCCeee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALD 38 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~ 38 (771)
.-+|+.|+++ . .-|-+.|+.|||..
T Consensus 14 k~iCpkC~a~---~-~~gaw~CrKCG~~~ 38 (51)
T 3j21_g 14 KYVCLRCGAT---N-PWGAKKCRKCGYKR 38 (51)
T ss_dssp EEECTTTCCE---E-CTTCSSCSSSSSCC
T ss_pred CccCCCCCCc---C-CCCceecCCCCCcc
Confidence 3579999998 4 78999999999983
No 23
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=71.11 E-value=2.3 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.499 Sum_probs=25.2
Q ss_pred cccccccccCCCCCCc--e-----eecCCc---ceecccCCeee
Q 004163 5 EGDIRRLKCKKCDNVG--F-----ECAYDG---FYYCTHCNALD 38 (771)
Q Consensus 5 ~~~~r~~~C~~C~S~~--w-----~~~ddG---~~yC~~CGhv~ 38 (771)
.+......|+.|+... | +.+|+| ||.|..|||.-
T Consensus 4 ~~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 4 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CEECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred CceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 3455667899999987 2 225666 79999999963
No 24
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=68.75 E-value=3.1 Score=35.09 Aligned_cols=31 Identities=6% Similarity=-0.125 Sum_probs=25.6
Q ss_pred cccccCCCCCCceeecCCcceecccCCeeec
Q 004163 9 RRLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 9 r~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
--.+|+.|.+..-.....|..+|..||....
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYP 37 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 3478999999987666789999999997654
No 25
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=68.55 E-value=2.8 Score=35.40 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=25.6
Q ss_pred cccccCCCCCCceeecCCcceecccCCeeec
Q 004163 9 RRLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 9 r~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
--.+|+.|.+..-....+|..+|..||..-.
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAYP 37 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 3578999999987665789999999997654
No 26
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=68.52 E-value=2.9 Score=35.43 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=25.5
Q ss_pred cccccCCCCCCceeecCCcceecccCCeeec
Q 004163 9 RRLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 9 r~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
--.+|+.|.+..-....+|..+|..||..-.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceec
Confidence 3578999999987665789999999997653
No 27
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=68.27 E-value=3.1 Score=35.08 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=25.1
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeec
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
-.+|+.|.+..-....+|..+|..||....
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFP 37 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEec
Confidence 478999999987665789999999997654
No 28
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=67.43 E-value=4.5 Score=34.05 Aligned_cols=32 Identities=13% Similarity=-0.006 Sum_probs=26.5
Q ss_pred ccccccCCCCCCceeecCCcceecccCCeeec
Q 004163 8 IRRLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 8 ~r~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
.--.+|+.|.+..-...+.|..+|..||..-.
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLAYR 39 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEEEE
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCcccc
Confidence 44579999999987776899999999997654
No 29
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.24 E-value=3.2 Score=36.44 Aligned_cols=31 Identities=19% Similarity=0.503 Sum_probs=26.3
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|+.|+...-.-...|-|.|..||..+-|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence 3579999999874448999999999998876
No 30
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=64.42 E-value=3.6 Score=36.74 Aligned_cols=30 Identities=17% Similarity=0.502 Sum_probs=26.0
Q ss_pred cccCCCCCCceeecCCcceecccCCeeecc
Q 004163 11 LKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 11 ~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
-.|+.|+...-.-..-|-|.|..||..+-|
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSCCEEEC
T ss_pred ccCcccCCCeeEecCcceEEcCCCCCEEeC
Confidence 479999999874447999999999999887
No 31
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=63.92 E-value=4 Score=37.29 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=22.5
Q ss_pred ccCCCCCCceeecCCc----ceecccCCeeec
Q 004163 12 KCKKCDNVGFECAYDG----FYYCTHCNALDD 39 (771)
Q Consensus 12 ~C~~C~S~~w~~~ddG----~~yC~~CGhv~E 39 (771)
-|+.|++-..-..+.| +|+|+.||.+..
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 4999999998543433 799999999775
No 32
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=63.84 E-value=3.4 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=26.1
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|+.|+...-.....|-|.|..||..+-|
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 3579999999874448999999999988876
No 33
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=62.70 E-value=4 Score=36.45 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=26.2
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|+.|+.....-..-|-|.|..||..+-|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 3579999999874447999999999999887
No 34
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=60.96 E-value=3.8 Score=37.30 Aligned_cols=30 Identities=23% Similarity=0.546 Sum_probs=25.9
Q ss_pred cccCCCCCCceeecCCcceecccCCeeecc
Q 004163 11 LKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 11 ~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
-.|+.|+.....-..-|-|.|..||..+-|
T Consensus 37 y~CpfCgk~~vKR~a~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 37 YGCPFCGKVAVKRAAVGIWKCKPCKKIIAG 66 (103)
T ss_dssp EECTTTCCEEEEEEETTEEEETTTTEEEEC
T ss_pred CCCCCCCCceeeecCcceEEcCCCCCEEeC
Confidence 469999999874447999999999999887
No 35
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=60.69 E-value=54 Score=33.43 Aligned_cols=109 Identities=8% Similarity=0.117 Sum_probs=73.3
Q ss_pred chHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 004163 259 SSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAE 337 (771)
Q Consensus 259 ~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~ 337 (771)
-.+|-+||||-.-.. |..+.||+... .+ ..+.+.|.++=..+.+
T Consensus 102 v~~acL~iAsK~EE~~p~~~~~~~~~~-~~----------------------------------~~~~~eI~~mE~~IL~ 146 (271)
T 2w96_A 102 LGATCMFVASKMKETIPLTAEKLCIYT-DN----------------------------------SIRPEELLQMELLLVN 146 (271)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHT-TT----------------------------------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHh-cC----------------------------------CCCHHHHHHHHHHHHH
Confidence 567888999988776 88888886421 00 1234778888888888
Q ss_pred HhCCCCCCCCHHHHHHHHHHHcCCChhhhHH----HHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 338 SIGLHLPPVNFYALASRYLKQLCLPLGKILP----RALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 338 ~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~----~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
.++..+.+++..-.+.+|++.++++.+ ... .+..+++..+-... ...+|+.+.++|+|.+|.+.+
T Consensus 147 ~L~~~l~~~tp~~fl~~~~~~l~~~~~-~~~~~~~~a~~~l~~~~~d~~-----~~~~~PS~iAaAai~lA~~~l 215 (271)
T 2w96_A 147 KLKWNLAAMTPHDFIEHFLSKMPEAEE-NKQIIRKHAQTFVALCATDVK-----FISNPPSMVAAGSVVAAVQGL 215 (271)
T ss_dssp HTTTCCCCCCHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHHHTSTH-----HHHSCHHHHHHHHHHHHHHHH
T ss_pred HCCCccCCCCHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHhhhh-----hhccCHHHHHHHHHHHHHHHh
Confidence 899888888999999999999999987 332 33344442221111 112333377888888887765
No 36
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=60.53 E-value=3.8 Score=38.03 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=25.2
Q ss_pred ccccCCCCCCce-eecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGF-ECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w-~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|+.|+.... +. ..|-|.|..||.++-|
T Consensus 60 kytCPfCGk~~vKR~-avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQ-GTGIWQCSYCDYKFTG 90 (116)
T ss_dssp CEECSSSCCEEEEEE-ETTEEEETTTCCEEEC
T ss_pred CCcCCCCCCceeEec-CceeEECCCCCCEEEC
Confidence 347999999765 55 7899999999999876
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=54.51 E-value=5.9 Score=38.96 Aligned_cols=27 Identities=11% Similarity=0.460 Sum_probs=22.9
Q ss_pred ccccCCCCCCceeecCCcceecccCCee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNAL 37 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv 37 (771)
=+.|++|..+--.. .+|.|.|..||..
T Consensus 42 Y~ACp~CnKKV~~~-~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLKY-HGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCCEEEE-TTTEEEETTTTEE
T ss_pred ehhchhhCCEeeeC-CCCeEECCCCCCC
Confidence 46799998877655 8999999999987
No 38
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=54.42 E-value=3.5 Score=32.28 Aligned_cols=27 Identities=22% Similarity=0.700 Sum_probs=23.5
Q ss_pred ccccCCCCCCc---eeecCCcceecccCCe
Q 004163 10 RLKCKKCDNVG---FECAYDGFYYCTHCNA 36 (771)
Q Consensus 10 ~~~C~~C~S~~---w~~~ddG~~yC~~CGh 36 (771)
...|.+|+... |+-+.+|.+.|..||-
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 46799999885 9988999999999985
No 39
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=52.85 E-value=6.3 Score=33.80 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=25.0
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeecc
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDDE 40 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~Eg 40 (771)
.-.|+.|+.....-..-|-|.|..||.++-|
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 4579999987653337899999999999776
No 40
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=51.01 E-value=4.7 Score=31.13 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=22.8
Q ss_pred cccCCCCCCc---eeecCCcceecccCCee
Q 004163 11 LKCKKCDNVG---FECAYDGFYYCTHCNAL 37 (771)
Q Consensus 11 ~~C~~C~S~~---w~~~ddG~~yC~~CGhv 37 (771)
..|.+|+... |+-+.+|...|..||-.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 3699999885 99988999999999943
No 41
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=50.41 E-value=6.5 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.606 Sum_probs=23.1
Q ss_pred cccCCCCCCceee----cCCcceecccCCeeec
Q 004163 11 LKCKKCDNVGFEC----AYDGFYYCTHCNALDD 39 (771)
Q Consensus 11 ~~C~~C~S~~w~~----~ddG~~yC~~CGhv~E 39 (771)
.-|+.|++-..-. ...+.|+|+.||++..
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~ 37 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 37 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEE
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeee
Confidence 3599999999844 2357899999999775
No 42
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=48.82 E-value=6.9 Score=32.84 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=25.3
Q ss_pred cccccCCCCCCc---eeecCCcceecccCCeee
Q 004163 9 RRLKCKKCDNVG---FECAYDGFYYCTHCNALD 38 (771)
Q Consensus 9 r~~~C~~C~S~~---w~~~ddG~~yC~~CGhv~ 38 (771)
....|.+|+... |+-+.+|...|-.||-..
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~ 40 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFL 40 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHH
Confidence 467899999885 988899999999999543
No 43
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=47.30 E-value=7.7 Score=36.60 Aligned_cols=29 Identities=17% Similarity=0.593 Sum_probs=22.0
Q ss_pred cccCCCCCCceeecC----CcceecccCCeeec
Q 004163 11 LKCKKCDNVGFECAY----DGFYYCTHCNALDD 39 (771)
Q Consensus 11 ~~C~~C~S~~w~~~d----dG~~yC~~CGhv~E 39 (771)
.-|+.|++-.+-..+ ..+|+|+.||.+.+
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 459999999985422 12799999999764
No 44
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=46.79 E-value=5 Score=33.47 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=26.7
Q ss_pred cccccccCCCCCCc---eeecCCcceecccCCeeec
Q 004163 7 DIRRLKCKKCDNVG---FECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 7 ~~r~~~C~~C~S~~---w~~~ddG~~yC~~CGhv~E 39 (771)
...+..|.+|+... |+-+.+|...|-.||-...
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~ 39 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYK 39 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHH
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHH
Confidence 34567899999885 9988999999999995443
No 45
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=45.10 E-value=6.3 Score=36.35 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=23.0
Q ss_pred ccccccCCCCCC---ceeecCCcceecccCCe
Q 004163 8 IRRLKCKKCDNV---GFECAYDGFYYCTHCNA 36 (771)
Q Consensus 8 ~r~~~C~~C~S~---~w~~~ddG~~yC~~CGh 36 (771)
..+..|.+|++. .|+-+.+|.+.|..||-
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 346789999955 59888999999999994
No 46
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=43.43 E-value=43 Score=33.86 Aligned_cols=110 Identities=12% Similarity=0.030 Sum_probs=73.0
Q ss_pred chHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 004163 259 SSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAE 337 (771)
Q Consensus 259 ~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~ 337 (771)
-.+|-+||||-.--. |..+.||+... ++ ..+.+.|.++=..+.+
T Consensus 96 v~~acl~iA~K~eE~~~p~~~d~~~~~-~~----------------------------------~~~~~~i~~mE~~iL~ 140 (257)
T 1g3n_C 96 TGSACLLVASKLRSLTPISTSSLCYAA-AD----------------------------------SFSRQELIDQEKELLE 140 (257)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHT-TT----------------------------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHH-CC----------------------------------CCCHHHHHHHHHHHHH
Confidence 567778999987543 77788776421 11 1223678888888888
Q ss_pred HhCCCCCCCCHHHHHHHHHHHcCCChhh---hHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 338 SIGLHLPPVNFYALASRYLKQLCLPLGK---ILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 338 ~~gL~fPpiN~~lLl~Ryl~eL~LP~E~---iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
.++..+..++..-.+.+|++.++++.+. +...+..+++.++-... ...+|+.+.++|+|.+|.+.+
T Consensus 141 ~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~-----~~~~~PS~iAaAai~lA~~~l 209 (257)
T 1g3n_C 141 KLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPL-----TGSLPASIISAAGCALLVPAN 209 (257)
T ss_dssp HTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTT-----GGGSCHHHHHHHHHHHHCCGG
T ss_pred HCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcc-----hhCcCHHHHHHHHHHHHHHHh
Confidence 8888887888899999999999998762 23345555553332211 123344378888888777765
No 47
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.76 E-value=18 Score=33.38 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=22.8
Q ss_pred ccccCCCCCCc--e-----eecCCc---ceecccCCeeec
Q 004163 10 RLKCKKCDNVG--F-----ECAYDG---FYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~C~S~~--w-----~~~ddG---~~yC~~CGhv~E 39 (771)
...|+.|+... | +.+|+| ||.|..|||.-.
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 56799999986 2 235566 799999999853
No 48
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=39.37 E-value=67 Score=32.36 Aligned_cols=110 Identities=9% Similarity=0.013 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhh-cccChhHHHHHHhcCCcccccchhhhHHHhcccCCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 004163 259 SSLAISFLACHVVR-EAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAE 337 (771)
Q Consensus 259 ~TLAI~YLAcl~LR-~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~~L~~~~~f~p~~l~s~~~I~~la~~la~ 337 (771)
-.+|-+||||-.-- .|..+.||+.. .. . ..+.+.|.++=..+.+
T Consensus 97 v~~acl~iA~K~eE~~~p~~~d~~~~-~~---------------------------~-------~~~~~~i~~mE~~IL~ 141 (254)
T 2f2c_A 97 IGAACVLIGSKIRTVKPMTVSKLTYL-SC---------------------------D-------CFTNLELINQEKDILE 141 (254)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHSTT-C-------------------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHH-hC---------------------------C-------CCCHHHHHHHHHHHHH
Confidence 56677888987744 46666666421 00 0 1234778888888888
Q ss_pred HhCCCCCCCCHHHHHHHHHHHcCCChhh---hHHHHHHhhhccCCccCccCCCCCCCChHHHHHHHHHHHHHHh
Q 004163 338 SIGLHLPPVNFYALASRYLKQLCLPLGK---ILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRIL 408 (771)
Q Consensus 338 ~~gL~fPpiN~~lLl~Ryl~eL~LP~E~---iy~~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~IIVAlKLL 408 (771)
.++..+.+++..-.+.+|++.++++.+. +...+..+++.++-.... ..+++.+.++|+|.+|.+.+
T Consensus 142 ~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~-----~~~~PS~iAaAai~la~~~~ 210 (254)
T 2f2c_A 142 ALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNI-----ALLSPGLICAGGLLTTIETD 210 (254)
T ss_dssp HTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGG-----TTSCHHHHHHHHHHHHHHTT
T ss_pred HCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcch-----hccCHHHHHHHHHHHHHHhc
Confidence 8888877778888999999999998872 233455555544322211 23344488888899998874
No 49
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=38.67 E-value=1.4e+02 Score=28.85 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHhhcccChhHHHHHHhcCCcccccchhhhHHHhcccCCCC
Q 004163 259 SSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSVAC 309 (771)
Q Consensus 259 ~TLAI~YLAcl~LR~PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~rLP~~ 309 (771)
-..|.+||||.+++.|.+..++..-+.-..--..+.++.|=+......|.|
T Consensus 144 IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~~p~~ 194 (207)
T 1c9b_A 144 VAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTD 194 (207)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHHHSCSS
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhChHH
Confidence 678999999999999999999988776666566667776666666666666
No 50
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=38.40 E-value=11 Score=35.76 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=25.7
Q ss_pred ccccccccccCCCCCCceeecCCcceecccCCeee
Q 004163 4 GEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNALD 38 (771)
Q Consensus 4 ~~~~~r~~~C~~C~S~~w~~~ddG~~yC~~CGhv~ 38 (771)
.+++..+.+|..||...|.- +.+|..||...
T Consensus 41 ~~grL~~~rC~~CG~~~~PP----r~~Cp~C~s~~ 71 (145)
T 3irb_A 41 KQNKIIGSKCSKCGRIFVPA----RSYCEHCFVKI 71 (145)
T ss_dssp HTTCCEEEECTTTCCEEESC----CSEETTTTEEC
T ss_pred HcCeEEEEEeCCCCcEEcCc----hhhCcCCCCCc
Confidence 35788899999999999965 56899999754
No 51
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=37.04 E-value=11 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.370 Sum_probs=13.8
Q ss_pred cccCCCCCCceeecCCcceecccCCe
Q 004163 11 LKCKKCDNVGFECAYDGFYYCTHCNA 36 (771)
Q Consensus 11 ~~C~~C~S~~w~~~ddG~~yC~~CGh 36 (771)
-+|..||..-=.. +..--.|.+|||
T Consensus 29 Y~C~~CG~~~e~~-~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLS-RTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCC-TTSTTCCSSSCC
T ss_pred EECCCCCCcceeC-CCCCccCCCCCc
Confidence 3577777663322 222335777777
No 52
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=36.44 E-value=20 Score=34.99 Aligned_cols=29 Identities=21% Similarity=0.591 Sum_probs=22.9
Q ss_pred ccccCC--CCCCceeecCCcceecccCCeeec
Q 004163 10 RLKCKK--CDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~--C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
-+.|++ |..+--.. ++|.|.|..|+....
T Consensus 43 Y~aC~~~~CnKKv~~~-~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQ-QNGLYRCEKCDTEFP 73 (181)
T ss_dssp EEBCCSTTCCCBCEEE-TTTEEEETTTTEEES
T ss_pred ECCCCchhcCCccccC-CCCeEECCCCCCcCC
Confidence 467988 98876554 789999999986653
No 53
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=33.76 E-value=22 Score=33.93 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=19.7
Q ss_pred cccCCCCCCceeecCCc----ceecccCCe
Q 004163 11 LKCKKCDNVGFECAYDG----FYYCTHCNA 36 (771)
Q Consensus 11 ~~C~~C~S~~w~~~ddG----~~yC~~CGh 36 (771)
.-|++||+..-....+| +++|..||.
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred ccCchhCCccccccccCCCCcceECCCCCC
Confidence 45999999995432455 789999994
No 54
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=30.74 E-value=16 Score=34.78 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=25.0
Q ss_pred ccccccccccCCCCCCceeecCCcceecccCCee
Q 004163 4 GEGDIRRLKCKKCDNVGFECAYDGFYYCTHCNAL 37 (771)
Q Consensus 4 ~~~~~r~~~C~~C~S~~w~~~ddG~~yC~~CGhv 37 (771)
.++...+.+|..||...|-- +.+|..||..
T Consensus 41 ~~g~L~~~rC~~CG~~~fPP----r~~Cp~C~s~ 70 (145)
T 2gnr_A 41 KQNKIIGSKCSKCGRIFVPA----RSYCEHCFVK 70 (145)
T ss_dssp HTTCCEEEECTTTCCEEESC----CSEETTTTEE
T ss_pred hCCEEEEEEECCCCcEEeCC----CCCCCCCCCC
Confidence 36788899999999999854 4589999976
No 55
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=29.72 E-value=27 Score=29.70 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=19.1
Q ss_pred cccCCCCCCceeecCCcceecccCCeeec
Q 004163 11 LKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 11 ~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
.+|+ |+...+-...-=-.-|. ||+.++
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEE
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeee
Confidence 4799 99885544344456798 998776
No 56
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=29.58 E-value=14 Score=31.39 Aligned_cols=30 Identities=17% Similarity=0.590 Sum_probs=22.8
Q ss_pred ccccccCCCCCCc---eee--cCCcceecccCCeee
Q 004163 8 IRRLKCKKCDNVG---FEC--AYDGFYYCTHCNALD 38 (771)
Q Consensus 8 ~r~~~C~~C~S~~---w~~--~ddG~~yC~~CGhv~ 38 (771)
....+|.+|+... |+- +.+| ..|-.||-..
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~ 40 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQ 40 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHH
Confidence 3457899999885 987 6778 8899999543
No 57
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=28.38 E-value=38 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.447 Sum_probs=32.9
Q ss_pred CccchHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccchhhhHHHhcc
Q 004163 256 PLSSSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAFVEIEKRFGQ 304 (771)
Q Consensus 256 p~~~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~~~LPkeMk~ 304 (771)
|+.+=.++|.+|+.-.-. -+++++|..||++ +.||++.. +..|+.
T Consensus 4 Pp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~-~fpyyr~~---~~gWqN 49 (102)
T 1vtn_C 4 PPYSYISLITMAIQQAPGKMLTLSEIYQWIMD-LFPYYREN---QQRWQN 49 (102)
T ss_dssp CSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHH-HCGGGGSC---HHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHH-cCCccccC---CCchhh
Confidence 344566788888775543 4899999999998 66999853 455543
No 58
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=26.62 E-value=29 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.559 Sum_probs=20.9
Q ss_pred ccccCCCCCCce-ee---cCCcceecccCCeeec
Q 004163 10 RLKCKKCDNVGF-EC---AYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~C~S~~w-~~---~ddG~~yC~~CGhv~E 39 (771)
.--|++||+..- .- .--.-|||..|+.+.|
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyE 67 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFE 67 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEEE
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhhe
Confidence 456999999753 22 1123499999998877
No 59
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=26.45 E-value=22 Score=32.73 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=25.9
Q ss_pred ccccccCCCCCCc---eeecCCcceecccCCeee
Q 004163 8 IRRLKCKKCDNVG---FECAYDGFYYCTHCNALD 38 (771)
Q Consensus 8 ~r~~~C~~C~S~~---w~~~ddG~~yC~~CGhv~ 38 (771)
..+..|.+|+... |+-+.+|...|-.||-..
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~ 90 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYY 90 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHH
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHH
Confidence 3467899999886 988899999999999443
No 60
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=24.53 E-value=62 Score=26.06 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=23.5
Q ss_pred cccccccCCCCCCceeecCCcceecc--cCCeeec
Q 004163 7 DIRRLKCKKCDNVGFECAYDGFYYCT--HCNALDD 39 (771)
Q Consensus 7 ~~r~~~C~~C~S~~w~~~ddG~~yC~--~CGhv~E 39 (771)
-..-.+|+.|.+..-.. +|..+|. .||+.-.
T Consensus 7 lL~iL~CP~c~~~L~~~--~~~L~C~~~~c~~~YP 39 (56)
T 2kpi_A 7 LLEILACPACHAPLEER--DAELICTGQDCGLAYP 39 (56)
T ss_dssp CTTSCCCSSSCSCEEEE--TTEEEECSSSCCCEEE
T ss_pred HHhheeCCCCCCcceec--CCEEEcCCcCCCcEEe
Confidence 34457999999986554 3999999 9997543
No 61
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.93 E-value=34 Score=37.57 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=22.7
Q ss_pred ccccCC--CCCCceeecCCcceecccCCeeec
Q 004163 10 RLKCKK--CDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~--C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
-+.|+. |..+--.. .+|.|.|..||...+
T Consensus 308 Y~aC~~~~C~kkv~~~-~~g~~~C~~C~~~~~ 338 (444)
T 4gop_C 308 YTACASEGCNKKVNLD-HENNWRCEKCDRSYA 338 (444)
T ss_dssp EEECCSTTCCCBEEEC-TTSCEEETTTTEEES
T ss_pred EccCCcccCCCccccC-CCccEECCCCCCcCc
Confidence 467987 98876554 789999999997653
No 62
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=22.96 E-value=39 Score=34.92 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=22.9
Q ss_pred ccccCCCCCCceeecCCcceecccCCeeec
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALDD 39 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~E 39 (771)
..-|..||+..-.....-.++|..||+..-
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCEec
Confidence 456999999986653444779999998764
No 63
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=22.76 E-value=57 Score=28.40 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.2
Q ss_pred CCccchHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccc
Q 004163 255 IPLSSSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAA 294 (771)
Q Consensus 255 Lp~~~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A 294 (771)
-|+.+=.++|.+|+.-.-. -+++.+|..||++ +.||++.
T Consensus 5 kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~-~fpyy~~ 44 (85)
T 3bpy_A 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVR-TVPYFKD 44 (85)
T ss_dssp TBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHH-HCGGGTT
T ss_pred cCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHH-hCcchhc
Confidence 3445667888888886654 3899999999987 5699885
No 64
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=22.45 E-value=56 Score=29.81 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=32.9
Q ss_pred hcCCccchHHHHHHHHHHhhc-ccChhHHHHHHhcCCcccccch
Q 004163 253 QKIPLSSSLAISFLACHVVRE-AILPTDIVKWSIEGKIPYFAAF 295 (771)
Q Consensus 253 ~~Lp~~~TLAI~YLAcl~LR~-PV~lsDLiRWI~eg~IPY~~A~ 295 (771)
..-|+.+=.+||.+|+.-.-. -+++.+|..||++ +.||++..
T Consensus 22 ~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~-~fPyyr~~ 64 (110)
T 3l2c_A 22 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVR-TVPYFKDK 64 (110)
T ss_dssp BTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHH-HCGGGTTC
T ss_pred CCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHH-hCchhhcC
Confidence 344556778899999887665 3899999999997 56999853
No 65
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=22.38 E-value=30 Score=25.36 Aligned_cols=15 Identities=20% Similarity=0.550 Sum_probs=12.9
Q ss_pred CcceecccCCeeecc
Q 004163 26 DGFYYCTHCNALDDE 40 (771)
Q Consensus 26 dG~~yC~~CGhv~Eg 40 (771)
-.||.|..||+++|-
T Consensus 4 ~~fY~C~~CGnivev 18 (36)
T 1dxg_A 4 GDVYKCELCGQVVKV 18 (36)
T ss_dssp TCEEECTTTCCEEEE
T ss_pred ccEEEcCCCCcEEEE
Confidence 358999999999984
No 66
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.18 E-value=39 Score=28.16 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=18.0
Q ss_pred ccccCCCCCCceeecCCcceecccCCeee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALD 38 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~ 38 (771)
.-+|..|+...- +....-.-|.+|||.+
T Consensus 21 ~Y~C~~Cg~~~~-l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNT-IQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCC-CCSSSCCCCSSSCCCC
T ss_pred EEECCCCCCeee-cCCCCceECCCCCcEE
Confidence 346888876543 3244557788888765
No 67
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.92 E-value=37 Score=30.49 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=20.7
Q ss_pred ccCCCCCCc-----------e---eecCCc--ceecccCCeeecc
Q 004163 12 KCKKCDNVG-----------F---ECAYDG--FYYCTHCNALDDE 40 (771)
Q Consensus 12 ~C~~C~S~~-----------w---~~~ddG--~~yC~~CGhv~Eg 40 (771)
.|+.|+... + .+..++ .++|..||..+-+
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 699998751 1 223455 8999999988754
No 68
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.43 E-value=40 Score=35.93 Aligned_cols=9 Identities=33% Similarity=0.940 Sum_probs=4.3
Q ss_pred ceecccCCe
Q 004163 28 FYYCTHCNA 36 (771)
Q Consensus 28 ~~yC~~CGh 36 (771)
+.-|.+||+
T Consensus 222 R~~C~~Cg~ 230 (309)
T 2fiy_A 222 RIKCSHCEE 230 (309)
T ss_dssp TTSCSSSCC
T ss_pred CcCCcCCCC
Confidence 344555554
No 69
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.24 E-value=64 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=21.2
Q ss_pred cccCCCCCCc--e-----eecCC---cceecccCCeeec
Q 004163 11 LKCKKCDNVG--F-----ECAYD---GFYYCTHCNALDD 39 (771)
Q Consensus 11 ~~C~~C~S~~--w-----~~~dd---G~~yC~~CGhv~E 39 (771)
..|+.|++.. | +.+|+ -||.|..|||+-.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 6799999985 2 22333 4799999999753
No 70
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=21.13 E-value=54 Score=30.11 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=25.2
Q ss_pred cccccccccCCCCCCc-------eeecCCc-----ceecccCCeeec
Q 004163 5 EGDIRRLKCKKCDNVG-------FECAYDG-----FYYCTHCNALDD 39 (771)
Q Consensus 5 ~~~~r~~~C~~C~S~~-------w~~~ddG-----~~yC~~CGhv~E 39 (771)
+..+++..|..|++.. -++ ..| .+.|-.|||+.-
T Consensus 60 p~~~KR~~Ck~C~s~LiPG~t~~vri-~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 60 PRKWKRRYCKRCHTFLIPGVNARVRL-RTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp CTTTTTSBCTTTCCBCCBTTTEEEEE-ECSSSCEEEEEETTTCCEEE
T ss_pred CHHHHHHhccCCCCEeECCCceEEEE-ecCCccEEEEECCCCCCEEE
Confidence 4457788999998864 244 345 678999999874
No 71
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=20.54 E-value=89 Score=32.69 Aligned_cols=78 Identities=13% Similarity=0.144 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCChhhhHH----HHHHhhhccCCccCccCCCCCCCChHHHHHHH
Q 004163 325 SQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKILP----RALKIQEWSMPPDLWLSTNECRFPTRVCVMSI 400 (771)
Q Consensus 325 ~~~I~~la~~la~~~gL~fPpiN~~lLl~Ryl~eL~LP~E~iy~----~v~RL~~fs~p~~l~~s~~~~~~Pe~V~LmA~ 400 (771)
.+.|.++=..+.+.++..+-.++..-.+.+|++.++++.+ -.. .+..+++.++-.. ....+|+.+.++|+
T Consensus 148 ~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~-~~~~~~~~a~~~l~lsl~d~-----~~l~~~PS~IAaAa 221 (306)
T 3g33_B 148 PRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRD-RQALVKKHAQTFLALCATDY-----TFAMYPPSMIATGS 221 (306)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTT-THHHHHHHHHHHHHHHHHCG-----GGTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChh-HHHHHHHHHHHHHHHHHhhh-----hhccCCHHHHHHHH
Confidence 3678887777888888877666777889999999999865 332 3333443222111 11234444888888
Q ss_pred HHHHHHHh
Q 004163 401 LIVSIRIL 408 (771)
Q Consensus 401 IIVAlKLL 408 (771)
|.+|.+.+
T Consensus 222 i~lA~~~l 229 (306)
T 3g33_B 222 IGAAVQGL 229 (306)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 88888765
No 72
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=20.33 E-value=46 Score=33.11 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.3
Q ss_pred ccccCCCCCCceeecCCcceecccCCeee
Q 004163 10 RLKCKKCDNVGFECAYDGFYYCTHCNALD 38 (771)
Q Consensus 10 ~~~C~~C~S~~w~~~ddG~~yC~~CGhv~ 38 (771)
+..|++|+...|=-.-..++||-.||...
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLTL 141 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCCB
T ss_pred cccCCccCCCccccCccCCCccCCceeEE
Confidence 57799999888733355699999998654
No 73
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.32 E-value=45 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=18.7
Q ss_pred ccCCCCCCceeec-CCccee--cccCCeee
Q 004163 12 KCKKCDNVGFECA-YDGFYY--CTHCNALD 38 (771)
Q Consensus 12 ~C~~C~S~~w~~~-ddG~~y--C~~CGhv~ 38 (771)
.|..|++..-.+. +++.++ |..||+..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 5999999876442 244443 88999865
Done!