Query 004164
Match_columns 771
No_of_seqs 647 out of 4142
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 18:39:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2352 Predicted spermine/spe 100.0 2.6E-66 5.6E-71 563.5 24.5 451 18-732 3-459 (482)
2 PRK04457 spermidine synthase; 100.0 2.2E-29 4.7E-34 265.8 27.0 213 448-752 26-241 (262)
3 PLN02823 spermine synthase 99.9 3.2E-23 6.9E-28 224.7 24.2 182 516-742 87-282 (336)
4 COG0421 SpeE Spermidine syntha 99.9 1.9E-22 4E-27 213.0 24.0 187 516-751 60-260 (282)
5 PF01564 Spermine_synth: Sperm 99.9 2.5E-22 5.5E-27 209.9 18.0 169 516-730 60-237 (246)
6 PRK00811 spermidine synthase; 99.9 6.4E-21 1.4E-25 203.7 22.4 167 516-729 60-238 (283)
7 PLN02366 spermidine synthase 99.9 2.7E-20 5.9E-25 200.0 23.4 169 515-729 74-254 (308)
8 PRK01581 speE spermidine synth 99.8 4.2E-19 9.2E-24 191.3 19.9 170 516-731 134-316 (374)
9 TIGR00417 speE spermidine synt 99.8 1.6E-17 3.5E-22 176.7 23.6 167 516-729 56-233 (270)
10 COG2226 UbiE Methylase involve 99.8 7.5E-18 1.6E-22 173.3 15.1 127 47-183 33-161 (238)
11 PRK00536 speE spermidine synth 99.7 6.5E-17 1.4E-21 169.0 16.4 161 506-730 42-217 (262)
12 KOG1271 Methyltransferases [Ge 99.7 4E-17 8.7E-22 156.3 12.3 172 18-195 10-196 (227)
13 PLN02336 phosphoethanolamine N 99.7 4.6E-15 1E-19 170.5 28.5 114 56-179 28-143 (475)
14 PF01209 Ubie_methyltran: ubiE 99.7 8.9E-17 1.9E-21 166.8 11.1 121 53-183 35-158 (233)
15 PRK03612 spermidine synthase; 99.6 2.2E-15 4.7E-20 174.1 17.9 168 516-730 281-461 (521)
16 PLN02233 ubiquinone biosynthes 99.6 5.6E-15 1.2E-19 156.4 15.5 121 53-183 61-187 (261)
17 TIGR03840 TMPT_Se_Te thiopurin 99.6 5.2E-15 1.1E-19 151.6 14.7 140 29-180 1-154 (213)
18 PF08241 Methyltransf_11: Meth 99.6 2.1E-15 4.5E-20 133.0 9.0 95 73-176 1-95 (95)
19 KOG1540 Ubiquinone biosynthesi 99.6 1.5E-14 3.2E-19 146.1 13.6 134 55-200 90-234 (296)
20 PRK13255 thiopurine S-methyltr 99.6 1.2E-14 2.7E-19 149.4 13.5 141 27-179 2-156 (218)
21 PRK13256 thiopurine S-methyltr 99.6 5.4E-14 1.2E-18 144.2 17.3 143 26-180 7-165 (226)
22 PLN02244 tocopherol O-methyltr 99.6 2.9E-14 6.4E-19 156.6 15.8 107 67-180 117-225 (340)
23 PRK11207 tellurite resistance 99.6 3.7E-14 7.9E-19 144.0 13.8 114 56-179 21-135 (197)
24 PF12847 Methyltransf_18: Meth 99.5 4.9E-14 1.1E-18 129.0 11.9 106 68-178 1-111 (112)
25 PF03848 TehB: Tellurite resis 99.5 1.5E-13 3.3E-18 137.2 14.2 131 27-180 5-135 (192)
26 TIGR02752 MenG_heptapren 2-hep 99.5 1.9E-13 4.2E-18 141.9 15.1 127 47-183 27-156 (231)
27 PF13847 Methyltransf_31: Meth 99.5 1.1E-13 2.4E-18 134.4 11.6 106 67-180 2-112 (152)
28 PF05724 TPMT: Thiopurine S-me 99.5 1.4E-13 3E-18 141.4 12.7 141 27-179 2-156 (218)
29 COG4262 Predicted spermidine s 99.5 1.5E-13 3.2E-18 144.3 13.0 155 540-731 288-454 (508)
30 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.4E-14 7.4E-19 143.9 7.9 106 68-181 59-164 (243)
31 TIGR00477 tehB tellurite resis 99.5 1.7E-13 3.7E-18 138.8 13.0 114 56-179 21-134 (195)
32 PRK10258 biotin biosynthesis p 99.5 2.4E-13 5.1E-18 143.2 13.5 114 55-183 32-145 (251)
33 PTZ00098 phosphoethanolamine N 99.5 2.3E-13 5E-18 144.3 13.3 109 67-181 51-159 (263)
34 PLN02396 hexaprenyldihydroxybe 99.5 1.2E-13 2.6E-18 149.6 10.9 107 67-181 130-238 (322)
35 PF05401 NodS: Nodulation prot 99.5 2.6E-13 5.7E-18 134.0 11.3 141 26-180 4-148 (201)
36 PRK11088 rrmA 23S rRNA methylt 99.5 4.5E-13 9.8E-18 142.8 13.7 148 16-184 36-187 (272)
37 PF13649 Methyltransf_25: Meth 99.5 1.3E-13 2.7E-18 124.4 7.3 96 72-172 1-101 (101)
38 PRK11036 putative S-adenosyl-L 99.5 6.3E-13 1.4E-17 140.4 13.7 107 68-182 44-153 (255)
39 TIGR00452 methyltransferase, p 99.4 7E-13 1.5E-17 143.1 13.2 106 67-180 120-227 (314)
40 PRK15068 tRNA mo(5)U34 methylt 99.4 7.6E-13 1.6E-17 144.1 13.2 113 56-179 113-227 (322)
41 PRK12335 tellurite resistance 99.4 3E-13 6.6E-18 145.3 9.0 104 68-178 120-223 (287)
42 PLN02336 phosphoethanolamine N 99.4 1.6E-12 3.4E-17 149.6 15.2 108 67-181 265-372 (475)
43 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.1E-12 4.6E-17 135.8 13.7 106 67-179 55-165 (247)
44 TIGR03587 Pse_Me-ase pseudamin 99.4 1.7E-12 3.7E-17 132.4 12.6 102 67-180 42-144 (204)
45 PRK11783 rlmL 23S rRNA m(2)G24 99.4 9.9E-10 2.2E-14 131.6 37.8 117 542-691 539-658 (702)
46 PRK14103 trans-aconitate 2-met 99.4 1.4E-12 3.1E-17 137.7 11.6 99 67-179 28-127 (255)
47 PF13489 Methyltransf_23: Meth 99.4 1.9E-12 4.2E-17 125.8 10.9 110 53-181 9-118 (161)
48 PRK05785 hypothetical protein; 99.4 2.9E-12 6.2E-17 132.8 12.7 98 68-181 51-148 (226)
49 PRK00107 gidB 16S rRNA methylt 99.4 8E-12 1.7E-16 125.4 15.2 118 68-199 45-165 (187)
50 PF08003 Methyltransf_9: Prote 99.4 2.9E-12 6.3E-17 134.4 12.3 179 45-236 97-283 (315)
51 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.3E-12 7.1E-17 139.0 12.9 105 67-180 112-217 (340)
52 KOG1562 Spermidine synthase [A 99.4 1.4E-12 3.1E-17 134.4 8.5 146 516-710 105-259 (337)
53 TIGR02072 BioC biotin biosynth 99.4 5.4E-12 1.2E-16 131.0 12.9 107 68-184 34-141 (240)
54 TIGR00740 methyltransferase, p 99.3 1.1E-11 2.4E-16 129.6 13.9 107 67-180 52-163 (239)
55 PRK01683 trans-aconitate 2-met 99.3 8.4E-12 1.8E-16 131.9 13.0 100 67-178 30-130 (258)
56 PRK08317 hypothetical protein; 99.3 1.7E-11 3.7E-16 127.1 14.4 118 53-180 7-126 (241)
57 PF02353 CMAS: Mycolic acid cy 99.3 1.4E-11 3E-16 130.9 13.9 116 56-180 50-168 (273)
58 PRK11873 arsM arsenite S-adeno 99.3 1.1E-11 2.3E-16 132.3 12.8 107 67-180 76-185 (272)
59 PRK06922 hypothetical protein; 99.3 1E-11 2.3E-16 142.7 13.3 112 68-179 418-538 (677)
60 KOG4300 Predicted methyltransf 99.3 8.1E-12 1.8E-16 122.6 10.3 107 67-180 75-184 (252)
61 KOG2361 Predicted methyltransf 99.3 9.2E-12 2E-16 125.4 10.8 148 27-184 35-189 (264)
62 COG2230 Cfa Cyclopropane fatty 99.3 2.7E-11 5.8E-16 127.2 13.6 118 57-183 61-181 (283)
63 PRK00216 ubiE ubiquinone/menaq 99.3 3.4E-11 7.3E-16 125.2 14.3 108 67-181 50-161 (239)
64 PRK00121 trmB tRNA (guanine-N( 99.3 1.5E-11 3.3E-16 125.3 10.8 131 68-199 40-177 (202)
65 TIGR02469 CbiT precorrin-6Y C5 99.3 9.4E-11 2E-15 108.8 14.4 113 54-179 8-123 (124)
66 TIGR00138 gidB 16S rRNA methyl 99.3 8.1E-11 1.8E-15 117.8 14.6 100 68-179 42-143 (181)
67 TIGR00537 hemK_rel_arch HemK-r 99.3 1E-10 2.2E-15 116.8 15.1 111 68-181 19-143 (179)
68 smart00138 MeTrc Methyltransfe 99.3 2.3E-11 5E-16 129.0 11.0 106 68-178 99-242 (264)
69 PF12847 Methyltransf_18: Meth 99.3 2.2E-11 4.8E-16 111.3 9.4 109 542-689 2-111 (112)
70 KOG1270 Methyltransferases [Co 99.3 1E-11 2.3E-16 126.6 7.8 101 69-181 90-198 (282)
71 PRK01544 bifunctional N5-gluta 99.2 2.9E-09 6.4E-14 122.8 28.7 130 542-706 348-477 (506)
72 PF01596 Methyltransf_3: O-met 99.2 2.9E-11 6.3E-16 122.9 10.3 107 540-688 44-154 (205)
73 PF08242 Methyltransf_12: Meth 99.2 1.5E-12 3.3E-17 116.7 0.6 95 73-174 1-99 (99)
74 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.1E-10 2.3E-15 120.0 14.5 114 56-180 30-145 (223)
75 COG4106 Tam Trans-aconitate me 99.2 2.3E-11 5.1E-16 120.4 8.8 101 67-179 29-130 (257)
76 smart00828 PKS_MT Methyltransf 99.2 4.6E-11 9.9E-16 123.5 11.2 102 71-180 2-106 (224)
77 COG4122 Predicted O-methyltran 99.2 7.9E-11 1.7E-15 119.8 12.5 126 540-711 58-195 (219)
78 PRK11705 cyclopropane fatty ac 99.2 8E-11 1.7E-15 131.2 13.6 105 67-182 166-271 (383)
79 PRK13944 protein-L-isoaspartat 99.2 1.5E-10 3.2E-15 118.3 13.9 112 51-178 58-173 (205)
80 PF05175 MTS: Methyltransferas 99.2 1.1E-10 2.3E-15 115.8 12.4 120 55-180 21-142 (170)
81 PRK06202 hypothetical protein; 99.2 1.6E-10 3.5E-15 120.3 13.9 107 67-182 59-170 (232)
82 PRK08287 cobalt-precorrin-6Y C 99.2 6.2E-10 1.3E-14 112.0 17.4 116 50-180 16-133 (187)
83 PRK07580 Mg-protoporphyrin IX 99.2 1.5E-10 3.3E-15 119.9 13.4 136 28-173 22-161 (230)
84 TIGR02021 BchM-ChlM magnesium 99.2 1.6E-10 3.5E-15 119.1 12.8 137 28-177 14-157 (219)
85 PRK13942 protein-L-isoaspartat 99.2 2.9E-10 6.3E-15 116.8 14.2 114 49-178 60-176 (212)
86 PRK11188 rrmJ 23S rRNA methylt 99.2 2.9E-10 6.2E-15 116.5 13.8 140 67-218 50-203 (209)
87 PLN02585 magnesium protoporphy 99.2 2E-10 4.4E-15 124.3 13.1 114 52-175 128-247 (315)
88 PLN03075 nicotianamine synthas 99.2 2.8E-10 6.2E-15 120.9 13.7 131 43-179 98-234 (296)
89 TIGR00080 pimt protein-L-isoas 99.2 3.2E-10 6.9E-15 116.7 13.7 112 51-178 63-177 (215)
90 PRK14967 putative methyltransf 99.2 4.6E-10 1E-14 116.2 14.7 113 67-180 35-161 (223)
91 PRK00377 cbiT cobalt-precorrin 99.1 9.4E-10 2E-14 111.8 16.2 116 52-180 27-147 (198)
92 TIGR03438 probable methyltrans 99.1 3.2E-10 6.9E-15 122.7 13.3 152 15-179 14-178 (301)
93 PRK00312 pcm protein-L-isoaspa 99.1 5.4E-10 1.2E-14 114.7 14.0 138 25-179 38-176 (212)
94 PRK04266 fibrillarin; Provisio 99.1 5.9E-10 1.3E-14 115.3 13.7 122 45-177 49-175 (226)
95 PRK15001 SAM-dependent 23S rib 99.1 7.3E-10 1.6E-14 122.4 14.6 120 54-179 217-341 (378)
96 PF13659 Methyltransf_26: Meth 99.1 2.6E-10 5.7E-15 105.1 9.2 111 69-179 1-116 (117)
97 COG4123 Predicted O-methyltran 99.1 1.4E-09 3E-14 112.4 15.3 156 540-731 43-214 (248)
98 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.1E-10 6.8E-15 114.9 9.8 116 68-183 16-137 (194)
99 TIGR02716 C20_methyl_CrtF C-20 99.1 1.2E-09 2.6E-14 118.6 15.0 106 67-180 148-256 (306)
100 PRK05134 bifunctional 3-demeth 99.1 7.7E-10 1.7E-14 115.1 13.0 106 67-180 47-153 (233)
101 KOG1541 Predicted protein carb 99.1 1.3E-09 2.8E-14 108.3 13.4 124 53-182 36-164 (270)
102 TIGR00406 prmA ribosomal prote 99.1 1.7E-09 3.6E-14 116.4 15.4 104 67-182 158-263 (288)
103 PLN02476 O-methyltransferase 99.1 7.3E-10 1.6E-14 117.1 12.2 107 540-688 117-227 (278)
104 PRK09489 rsmC 16S ribosomal RN 99.1 1.6E-09 3.6E-14 118.8 15.1 148 24-180 152-305 (342)
105 PLN03075 nicotianamine synthas 99.1 1.3E-09 2.8E-14 115.9 13.5 149 541-731 123-277 (296)
106 TIGR01177 conserved hypothetic 99.1 2E-09 4.4E-14 118.0 15.5 128 52-183 169-299 (329)
107 TIGR01983 UbiG ubiquinone bios 99.1 9.4E-10 2E-14 113.6 11.4 105 68-180 45-151 (224)
108 TIGR00438 rrmJ cell division p 99.0 5.9E-09 1.3E-13 105.0 15.9 140 67-219 31-185 (188)
109 TIGR03534 RF_mod_PrmC protein- 99.0 1.7E-09 3.7E-14 113.5 12.3 110 68-178 87-217 (251)
110 PRK09328 N5-glutamine S-adenos 99.0 2E-09 4.3E-14 114.8 12.7 111 67-178 107-238 (275)
111 PTZ00146 fibrillarin; Provisio 99.0 2.6E-09 5.7E-14 113.1 13.3 123 45-177 109-236 (293)
112 PLN02781 Probable caffeoyl-CoA 99.0 1.7E-09 3.7E-14 112.7 11.6 108 540-689 67-179 (234)
113 PLN02589 caffeoyl-CoA O-methyl 99.0 1.9E-09 4E-14 112.7 11.7 110 540-690 78-192 (247)
114 TIGR03533 L3_gln_methyl protei 99.0 3.7E-09 8E-14 113.4 14.3 111 68-179 121-252 (284)
115 PF13659 Methyltransf_26: Meth 99.0 2.7E-09 6E-14 98.3 11.5 113 543-689 2-115 (117)
116 PRK14966 unknown domain/N5-glu 99.0 2.9E-09 6.3E-14 117.9 13.6 111 68-178 251-381 (423)
117 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.4E-09 5.2E-14 117.9 12.8 117 67-184 121-241 (390)
118 PF07021 MetW: Methionine bios 99.0 1.3E-09 2.8E-14 107.8 9.7 96 56-169 6-103 (193)
119 PRK07402 precorrin-6B methylas 99.0 1.3E-08 2.8E-13 103.2 17.3 118 51-182 26-146 (196)
120 PRK14968 putative methyltransf 99.0 7.8E-09 1.7E-13 103.5 15.3 112 67-180 22-150 (188)
121 PF03291 Pox_MCEL: mRNA cappin 99.0 1.7E-09 3.7E-14 117.8 10.6 120 68-190 62-198 (331)
122 PRK00517 prmA ribosomal protei 99.0 3.7E-09 8E-14 111.4 12.8 97 67-181 118-216 (250)
123 KOG1975 mRNA cap methyltransfe 99.0 1.3E-09 2.9E-14 113.7 8.6 121 67-190 116-249 (389)
124 TIGR00536 hemK_fam HemK family 99.0 4.8E-09 1E-13 112.7 13.2 109 70-179 116-245 (284)
125 COG2264 PrmA Ribosomal protein 99.0 6E-09 1.3E-13 110.5 13.1 125 67-203 161-288 (300)
126 PRK11805 N5-glutamine S-adenos 99.0 7.5E-09 1.6E-13 112.1 14.1 109 70-179 135-264 (307)
127 TIGR02081 metW methionine bios 99.0 3.5E-09 7.5E-14 107.2 10.8 90 68-170 13-104 (194)
128 TIGR02469 CbiT precorrin-6Y C5 98.9 6.8E-09 1.5E-13 96.3 11.8 104 542-690 20-123 (124)
129 PRK00107 gidB 16S rRNA methylt 98.9 1.1E-08 2.3E-13 102.9 13.5 146 517-717 28-173 (187)
130 PF06325 PrmA: Ribosomal prote 98.9 5.8E-09 1.3E-13 111.6 12.2 121 67-200 160-280 (295)
131 cd02440 AdoMet_MTases S-adenos 98.9 5.6E-09 1.2E-13 91.9 10.1 101 71-177 1-103 (107)
132 KOG3010 Methyltransferase [Gen 98.9 2.3E-09 5.1E-14 108.3 8.1 103 70-181 35-140 (261)
133 COG2518 Pcm Protein-L-isoaspar 98.9 1.2E-08 2.6E-13 102.6 12.8 116 47-179 54-170 (209)
134 COG2242 CobL Precorrin-6B meth 98.9 4.9E-08 1.1E-12 96.1 16.8 132 51-196 20-153 (187)
135 PF05175 MTS: Methyltransferas 98.9 3.1E-09 6.8E-14 105.3 8.0 131 541-715 31-161 (170)
136 TIGR00091 tRNA (guanine-N(7)-) 98.9 3E-08 6.4E-13 100.5 15.2 134 541-708 16-149 (194)
137 PLN02232 ubiquinone biosynthes 98.9 4E-09 8.6E-14 103.5 8.3 82 95-183 1-86 (160)
138 COG2813 RsmC 16S RNA G1207 met 98.9 2.5E-08 5.4E-13 105.3 14.2 134 52-192 145-280 (300)
139 COG4123 Predicted O-methyltran 98.9 1.3E-08 2.9E-13 105.2 11.9 137 57-198 36-189 (248)
140 PRK00121 trmB tRNA (guanine-N( 98.9 4.3E-08 9.3E-13 100.0 15.1 131 541-706 40-171 (202)
141 TIGR00138 gidB 16S rRNA methyl 98.9 3.1E-08 6.8E-13 99.1 13.3 97 542-689 43-142 (181)
142 PRK10901 16S rRNA methyltransf 98.8 3.2E-08 6.8E-13 112.4 14.9 114 67-180 243-374 (427)
143 PF01135 PCMT: Protein-L-isoas 98.8 1.2E-08 2.6E-13 104.3 10.2 116 48-179 55-173 (209)
144 PRK13943 protein-L-isoaspartat 98.8 2.5E-08 5.4E-13 108.3 12.9 113 50-178 65-180 (322)
145 smart00650 rADc Ribosomal RNA 98.8 4.1E-08 8.8E-13 97.2 13.0 102 67-178 12-113 (169)
146 TIGR03704 PrmC_rel_meth putati 98.8 4E-08 8.7E-13 103.5 12.9 110 69-180 87-218 (251)
147 PRK14903 16S rRNA methyltransf 98.8 6.6E-08 1.4E-12 109.6 14.0 114 67-180 236-368 (431)
148 PRK00811 spermidine synthase; 98.8 4.5E-08 9.8E-13 105.0 11.9 108 68-178 76-191 (283)
149 PRK14901 16S rRNA methyltransf 98.8 7.2E-08 1.6E-12 109.7 14.0 114 67-180 251-386 (434)
150 PRK08287 cobalt-precorrin-6Y C 98.8 7.1E-08 1.5E-12 97.0 12.4 116 541-706 31-146 (187)
151 TIGR00563 rsmB ribosomal RNA s 98.8 8.4E-08 1.8E-12 108.9 14.4 122 56-180 229-370 (426)
152 TIGR00446 nop2p NOL1/NOP2/sun 98.8 8.5E-08 1.8E-12 101.9 13.5 114 67-180 70-201 (264)
153 PRK04457 spermidine synthase; 98.7 8.5E-08 1.8E-12 101.7 13.1 112 68-182 66-181 (262)
154 PRK14904 16S rRNA methyltransf 98.7 9E-08 2E-12 109.2 14.0 114 67-181 249-380 (445)
155 PHA03411 putative methyltransf 98.7 6.9E-08 1.5E-12 101.4 11.9 112 68-184 64-189 (279)
156 PF13847 Methyltransf_31: Meth 98.7 4.7E-08 1E-12 94.9 9.6 111 541-697 3-118 (152)
157 COG2519 GCD14 tRNA(1-methylade 98.7 1E-07 2.3E-12 97.9 11.7 120 540-712 93-217 (256)
158 PRK00377 cbiT cobalt-precorrin 98.7 2.8E-07 6.2E-12 93.6 14.8 120 541-707 40-161 (198)
159 COG4976 Predicted methyltransf 98.7 6.6E-09 1.4E-13 103.9 2.1 112 57-180 114-227 (287)
160 TIGR00446 nop2p NOL1/NOP2/sun 98.7 3.8E-07 8.2E-12 97.0 15.5 137 541-712 71-222 (264)
161 TIGR03533 L3_gln_methyl protei 98.7 4E-07 8.7E-12 97.7 15.4 116 541-690 121-252 (284)
162 COG2890 HemK Methylase of poly 98.7 2.2E-07 4.8E-12 99.3 13.3 118 71-190 113-251 (280)
163 PRK14103 trans-aconitate 2-met 98.7 1.7E-07 3.7E-12 99.0 12.3 101 540-691 28-128 (255)
164 PRK07402 precorrin-6B methylas 98.7 2.2E-07 4.8E-12 94.2 12.5 105 541-691 40-144 (196)
165 PRK14902 16S rRNA methyltransf 98.7 2.1E-07 4.6E-12 106.2 13.7 121 56-180 241-381 (444)
166 PF00891 Methyltransf_2: O-met 98.6 1.6E-07 3.4E-12 98.4 11.2 100 67-180 99-201 (241)
167 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.9E-07 6.2E-12 110.6 14.9 151 46-203 522-680 (702)
168 PRK09328 N5-glutamine S-adenos 98.6 4.3E-07 9.3E-12 96.8 14.5 150 541-727 108-274 (275)
169 COG2242 CobL Precorrin-6B meth 98.6 5.1E-07 1.1E-11 89.0 13.4 124 540-715 33-160 (187)
170 PRK15001 SAM-dependent 23S rib 98.6 5.6E-07 1.2E-11 99.7 15.4 128 543-714 230-360 (378)
171 PHA03412 putative methyltransf 98.6 4.7E-07 1E-11 93.1 13.7 119 45-173 31-158 (241)
172 PRK15128 23S rRNA m(5)C1962 me 98.6 4E-07 8.7E-12 101.9 14.4 130 45-180 203-341 (396)
173 COG2521 Predicted archaeal met 98.6 1.3E-07 2.8E-12 95.1 9.3 130 540-709 133-271 (287)
174 TIGR02752 MenG_heptapren 2-hep 98.6 1.5E-06 3.3E-11 90.2 17.6 104 541-687 45-149 (231)
175 COG2518 Pcm Protein-L-isoaspar 98.6 1.3E-07 2.7E-12 95.2 8.8 117 513-690 54-170 (209)
176 PLN02781 Probable caffeoyl-CoA 98.6 3E-07 6.6E-12 95.9 12.0 102 67-178 67-178 (234)
177 PRK14903 16S rRNA methyltransf 98.6 6.7E-07 1.5E-11 101.5 15.6 137 541-714 237-391 (431)
178 PRK01683 trans-aconitate 2-met 98.6 3.9E-07 8.5E-12 96.4 12.9 103 540-691 30-132 (258)
179 PRK11805 N5-glutamine S-adenos 98.6 5.3E-07 1.1E-11 97.8 13.9 147 543-729 135-297 (307)
180 COG2263 Predicted RNA methylas 98.6 5.9E-07 1.3E-11 88.3 12.6 102 44-148 21-122 (198)
181 PRK15451 tRNA cmo(5)U34 methyl 98.6 6.4E-07 1.4E-11 94.2 13.8 101 541-688 56-163 (247)
182 PLN02366 spermidine synthase 98.6 5.1E-07 1.1E-11 97.6 12.8 108 67-177 90-205 (308)
183 KOG2940 Predicted methyltransf 98.6 5.1E-08 1.1E-12 97.4 4.6 112 67-186 71-182 (325)
184 PRK11036 putative S-adenosyl-L 98.6 4.7E-07 1E-11 95.7 12.2 110 541-694 44-154 (255)
185 PRK13942 protein-L-isoaspartat 98.6 3.1E-07 6.6E-12 94.4 10.5 100 541-689 76-176 (212)
186 PRK13168 rumA 23S rRNA m(5)U19 98.6 6.3E-07 1.4E-11 102.3 14.1 132 53-200 285-421 (443)
187 PRK14121 tRNA (guanine-N(7)-)- 98.6 8E-07 1.7E-11 98.1 14.3 130 541-707 122-251 (390)
188 TIGR00080 pimt protein-L-isoas 98.6 2.5E-07 5.4E-12 95.2 9.8 102 540-690 76-178 (215)
189 PF05891 Methyltransf_PK: AdoM 98.6 1.9E-07 4.1E-12 94.4 8.4 107 68-179 55-162 (218)
190 COG2227 UbiG 2-polyprenyl-3-me 98.5 4.8E-07 1E-11 92.4 10.9 111 541-697 59-169 (243)
191 TIGR00536 hemK_fam HemK family 98.5 1.5E-06 3.2E-11 93.5 15.4 148 543-727 116-281 (284)
192 PRK14966 unknown domain/N5-glu 98.5 2.4E-06 5.2E-11 95.0 17.2 151 542-728 252-418 (423)
193 PLN02233 ubiquinone biosynthes 98.5 9.8E-07 2.1E-11 93.7 13.7 111 540-693 72-186 (261)
194 PLN02396 hexaprenyldihydroxybe 98.5 4.2E-07 9E-12 98.9 11.1 108 541-693 131-239 (322)
195 KOG1499 Protein arginine N-met 98.5 3.3E-07 7.1E-12 98.1 9.9 104 67-175 59-164 (346)
196 PRK13944 protein-L-isoaspartat 98.5 6.4E-07 1.4E-11 91.6 11.8 101 541-690 72-174 (205)
197 TIGR03534 RF_mod_PrmC protein- 98.5 7.4E-07 1.6E-11 93.5 12.4 116 541-690 87-218 (251)
198 TIGR00740 methyltransferase, p 98.5 2E-06 4.3E-11 90.0 15.4 105 541-688 53-160 (239)
199 TIGR03704 PrmC_rel_meth putati 98.5 1.1E-06 2.3E-11 92.8 13.4 128 542-706 87-230 (251)
200 PRK11188 rrmJ 23S rRNA methylt 98.5 1.7E-06 3.8E-11 88.6 14.4 144 541-728 51-206 (209)
201 PRK04266 fibrillarin; Provisio 98.5 2E-06 4.3E-11 89.2 14.8 143 540-726 71-223 (226)
202 TIGR00537 hemK_rel_arch HemK-r 98.5 1.6E-06 3.4E-11 86.7 13.6 147 541-727 19-176 (179)
203 PRK14902 16S rRNA methyltransf 98.5 1.1E-06 2.5E-11 100.3 14.3 132 541-709 250-399 (444)
204 TIGR00417 speE spermidine synt 98.5 7.8E-07 1.7E-11 94.9 12.0 108 68-178 72-186 (270)
205 PF08241 Methyltransf_11: Meth 98.5 4.1E-07 8.9E-12 79.7 7.9 94 546-687 1-95 (95)
206 PRK01544 bifunctional N5-gluta 98.5 1.2E-06 2.7E-11 101.2 13.7 152 542-730 139-308 (506)
207 COG2226 UbiE Methylase involve 98.5 1E-06 2.2E-11 91.4 11.5 109 541-692 51-159 (238)
208 TIGR00563 rsmB ribosomal RNA s 98.5 1.5E-06 3.3E-11 98.7 14.1 136 541-711 238-390 (426)
209 KOG2899 Predicted methyltransf 98.5 6E-07 1.3E-11 90.8 9.4 106 68-177 58-208 (288)
210 COG1041 Predicted DNA modifica 98.5 3E-06 6.5E-11 91.3 15.3 127 50-180 182-312 (347)
211 PRK01581 speE spermidine synth 98.5 6.1E-07 1.3E-11 97.8 10.2 110 68-180 150-270 (374)
212 PRK09489 rsmC 16S ribosomal RN 98.5 2.4E-06 5.2E-11 94.0 14.8 142 542-730 197-338 (342)
213 PF02390 Methyltransf_4: Putat 98.5 6.8E-07 1.5E-11 90.6 9.6 116 69-184 18-139 (195)
214 COG2519 GCD14 tRNA(1-methylade 98.5 1.5E-06 3.2E-11 89.5 12.1 116 55-186 84-203 (256)
215 PF13649 Methyltransf_25: Meth 98.5 5.3E-07 1.1E-11 81.1 7.9 95 545-683 1-101 (101)
216 PF01739 CheR: CheR methyltran 98.5 4.8E-07 1E-11 91.5 8.5 106 68-178 31-175 (196)
217 PRK14904 16S rRNA methyltransf 98.5 2.1E-06 4.4E-11 98.2 14.6 131 541-710 250-398 (445)
218 TIGR02072 BioC biotin biosynth 98.4 1.3E-06 2.8E-11 90.5 11.8 105 541-692 34-138 (240)
219 PF02353 CMAS: Mycolic acid cy 98.4 9.6E-07 2.1E-11 94.1 10.7 109 540-695 61-172 (273)
220 PRK10909 rsmD 16S rRNA m(2)G96 98.4 2.2E-06 4.9E-11 87.0 12.8 120 51-180 38-161 (199)
221 PF10294 Methyltransf_16: Puta 98.4 1.3E-06 2.8E-11 86.9 10.7 105 67-179 44-157 (173)
222 PRK03522 rumB 23S rRNA methylu 98.4 1.5E-06 3.3E-11 94.7 12.0 73 68-141 173-247 (315)
223 PTZ00098 phosphoethanolamine N 98.4 1.7E-06 3.6E-11 92.0 12.0 107 540-691 51-158 (263)
224 PRK10611 chemotaxis methyltran 98.4 2E-06 4.3E-11 91.9 12.3 105 69-178 116-262 (287)
225 TIGR00438 rrmJ cell division p 98.4 5.1E-06 1.1E-10 83.6 14.6 145 540-727 31-186 (188)
226 TIGR00406 prmA ribosomal prote 98.4 3.2E-06 6.9E-11 91.1 13.7 119 541-710 159-278 (288)
227 COG3963 Phospholipid N-methylt 98.4 2.4E-06 5.3E-11 81.9 11.2 119 50-180 33-158 (194)
228 PF08242 Methyltransf_12: Meth 98.4 4.1E-08 8.9E-13 87.9 -0.8 96 546-685 1-99 (99)
229 PRK15128 23S rRNA m(5)C1962 me 98.4 3.3E-06 7.2E-11 94.6 14.0 110 542-687 221-337 (396)
230 PRK11207 tellurite resistance 98.4 1.2E-06 2.5E-11 89.1 9.5 103 541-687 30-132 (197)
231 PLN02244 tocopherol O-methyltr 98.4 1.8E-06 3.9E-11 95.2 11.7 107 541-691 118-225 (340)
232 PLN02672 methionine S-methyltr 98.4 1.6E-06 3.4E-11 106.5 12.1 110 69-178 119-278 (1082)
233 PF01209 Ubie_methyltran: ubiE 98.4 4.7E-07 1E-11 94.3 6.4 109 540-692 46-156 (233)
234 PF01135 PCMT: Protein-L-isoas 98.4 8.5E-07 1.8E-11 90.7 8.1 103 540-691 71-174 (209)
235 PRK14896 ksgA 16S ribosomal RN 98.4 1.8E-06 4E-11 91.4 10.8 88 51-145 15-102 (258)
236 PRK10901 16S rRNA methyltransf 98.4 5.8E-06 1.3E-10 94.0 15.5 135 541-709 244-392 (427)
237 COG2230 Cfa Cyclopropane fatty 98.4 1.7E-06 3.8E-11 91.2 10.3 123 540-710 71-198 (283)
238 PF05219 DREV: DREV methyltran 98.4 1.9E-06 4E-11 89.2 10.2 95 68-178 94-188 (265)
239 PRK03612 spermidine synthase; 98.4 1.3E-06 2.8E-11 101.5 9.9 110 68-179 297-416 (521)
240 PRK00274 ksgA 16S ribosomal RN 98.4 1.5E-06 3.2E-11 92.8 9.6 86 52-143 29-114 (272)
241 PRK00517 prmA ribosomal protei 98.3 4.5E-06 9.7E-11 88.1 13.1 113 540-709 118-232 (250)
242 TIGR00479 rumA 23S rRNA (uraci 98.3 3.9E-06 8.5E-11 95.6 13.3 121 67-199 291-416 (431)
243 smart00828 PKS_MT Methyltransf 98.3 1.4E-06 3.1E-11 89.9 8.9 103 543-689 1-104 (224)
244 COG0220 Predicted S-adenosylme 98.3 2.8E-06 6E-11 87.7 10.8 116 69-184 49-170 (227)
245 PTZ00146 fibrillarin; Provisio 98.3 1.2E-05 2.6E-10 85.6 15.8 142 540-729 131-287 (293)
246 PF08704 GCD14: tRNA methyltra 98.3 4.8E-06 1E-10 87.0 12.6 132 50-196 25-164 (247)
247 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 1.2E-05 2.7E-10 82.4 15.6 103 541-688 39-142 (223)
248 PRK00312 pcm protein-L-isoaspa 98.3 3.3E-06 7.1E-11 86.7 11.1 100 540-690 77-176 (212)
249 PRK10909 rsmD 16S rRNA m(2)G96 98.3 4.2E-06 9.1E-11 85.0 11.5 105 542-690 54-160 (199)
250 KOG3191 Predicted N6-DNA-methy 98.3 8E-06 1.7E-10 79.5 12.6 134 68-202 43-192 (209)
251 PRK04148 hypothetical protein; 98.3 8.9E-06 1.9E-10 76.7 12.7 110 52-183 3-114 (134)
252 PF08704 GCD14: tRNA methyltra 98.3 6.5E-06 1.4E-10 86.1 12.9 125 540-715 39-171 (247)
253 PRK14901 16S rRNA methyltransf 98.3 8.2E-06 1.8E-10 92.9 14.7 136 541-710 252-405 (434)
254 TIGR00755 ksgA dimethyladenosi 98.3 6E-06 1.3E-10 87.2 12.7 87 51-144 15-104 (253)
255 KOG2899 Predicted methyltransf 98.3 2.9E-06 6.4E-11 86.0 9.4 137 540-688 57-208 (288)
256 COG2890 HemK Methylase of poly 98.3 5.7E-06 1.2E-10 88.5 12.2 146 544-729 113-277 (280)
257 TIGR03439 methyl_EasF probable 98.3 5.9E-06 1.3E-10 89.6 12.4 107 67-178 75-197 (319)
258 PF06080 DUF938: Protein of un 98.3 4.9E-06 1.1E-10 83.8 10.9 119 51-178 12-141 (204)
259 PF01596 Methyltransf_3: O-met 98.3 3.2E-06 7E-11 86.2 9.8 101 68-178 45-155 (205)
260 PF05401 NodS: Nodulation prot 98.3 1.2E-05 2.6E-10 80.2 13.3 141 540-730 42-197 (201)
261 KOG1663 O-methyltransferase [S 98.3 6.2E-06 1.3E-10 83.5 11.3 109 541-689 73-183 (237)
262 COG4106 Tam Trans-aconitate me 98.3 6E-06 1.3E-10 82.5 10.7 104 540-692 29-132 (257)
263 PLN02476 O-methyltransferase 98.3 7.5E-06 1.6E-10 86.9 12.1 102 67-178 117-228 (278)
264 PRK06922 hypothetical protein; 98.2 5.2E-06 1.1E-10 96.4 11.6 115 541-689 418-537 (677)
265 PF02390 Methyltransf_4: Putat 98.2 5.9E-06 1.3E-10 83.7 10.5 130 544-707 20-149 (195)
266 PF05148 Methyltransf_8: Hypot 98.2 5.8E-06 1.3E-10 82.9 9.9 123 54-202 60-184 (219)
267 PRK13943 protein-L-isoaspartat 98.2 7.6E-06 1.6E-10 89.1 11.7 100 541-689 80-180 (322)
268 PF05185 PRMT5: PRMT5 arginine 98.2 7.1E-06 1.5E-10 93.2 11.9 101 69-175 187-294 (448)
269 PLN02490 MPBQ/MSBQ methyltrans 98.2 8.2E-06 1.8E-10 89.3 11.8 101 541-687 113-213 (340)
270 PRK11873 arsM arsenite S-adeno 98.2 7.2E-06 1.6E-10 87.5 11.3 106 540-688 76-182 (272)
271 COG2813 RsmC 16S RNA G1207 met 98.2 2E-05 4.4E-10 83.5 14.2 129 542-715 159-287 (300)
272 PF01170 UPF0020: Putative RNA 98.2 1E-05 2.2E-10 80.9 11.4 118 51-171 14-144 (179)
273 cd02440 AdoMet_MTases S-adenos 98.2 1.3E-05 2.9E-10 70.0 11.0 103 544-688 1-103 (107)
274 PRK10258 biotin biosynthesis p 98.2 1E-05 2.2E-10 85.2 11.8 102 541-692 42-143 (251)
275 TIGR00477 tehB tellurite resis 98.2 7.5E-06 1.6E-10 83.0 10.0 103 541-688 30-132 (195)
276 PF06325 PrmA: Ribosomal prote 98.2 5.6E-06 1.2E-10 88.8 9.4 162 505-728 130-293 (295)
277 PRK14967 putative methyltransf 98.2 1.1E-05 2.4E-10 83.5 11.3 127 542-706 37-174 (223)
278 COG4122 Predicted O-methyltran 98.2 1.1E-05 2.4E-10 82.5 10.9 116 52-180 46-168 (219)
279 PRK08317 hypothetical protein; 98.2 1.6E-05 3.5E-10 82.2 12.6 106 540-689 18-124 (241)
280 PRK14968 putative methyltransf 98.2 2.2E-05 4.7E-10 78.4 13.1 128 541-706 23-163 (188)
281 COG2264 PrmA Ribosomal protein 98.2 1.6E-05 3.4E-10 84.8 12.2 164 505-727 131-297 (300)
282 PTZ00338 dimethyladenosine tra 98.2 7.9E-06 1.7E-10 88.0 9.9 88 52-145 23-112 (294)
283 KOG2904 Predicted methyltransf 98.2 2.3E-05 5E-10 80.9 12.6 128 52-179 132-286 (328)
284 TIGR00478 tly hemolysin TlyA f 98.1 1.4E-05 3E-10 82.7 11.1 91 67-177 74-170 (228)
285 KOG1540 Ubiquinone biosynthesi 98.1 2.8E-05 6.1E-10 79.7 12.9 107 538-687 97-212 (296)
286 TIGR02085 meth_trns_rumB 23S r 98.1 1.2E-05 2.7E-10 89.7 11.5 119 68-200 233-353 (374)
287 KOG1270 Methyltransferases [Co 98.1 1.7E-06 3.6E-11 89.0 4.2 109 543-693 91-199 (282)
288 PRK00216 ubiE ubiquinone/menaq 98.1 1.5E-05 3.2E-10 82.7 11.4 106 541-689 51-158 (239)
289 KOG1500 Protein arginine N-met 98.1 7.4E-06 1.6E-10 86.2 8.9 102 67-175 176-279 (517)
290 TIGR00095 RNA methyltransferas 98.1 1.6E-05 3.5E-10 80.2 11.1 105 68-180 49-161 (189)
291 PHA03411 putative methyltransf 98.1 2.7E-05 5.8E-10 82.1 13.0 109 542-690 65-184 (279)
292 TIGR02716 C20_methyl_CrtF C-20 98.1 1.4E-05 3.1E-10 86.7 11.4 105 540-688 148-253 (306)
293 KOG3420 Predicted RNA methylas 98.1 4.6E-06 1E-10 78.1 6.3 104 43-146 22-126 (185)
294 PRK11705 cyclopropane fatty ac 98.1 2.2E-05 4.7E-10 87.9 13.0 105 540-692 166-270 (383)
295 PRK11088 rrmA 23S rRNA methylt 98.1 1.2E-05 2.5E-10 86.0 10.1 94 541-689 85-181 (272)
296 PLN02823 spermine synthase 98.1 2E-05 4.3E-10 86.3 11.7 109 68-178 103-220 (336)
297 smart00650 rADc Ribosomal RNA 98.1 2.3E-05 5.1E-10 77.5 11.2 59 541-603 13-71 (169)
298 PRK11933 yebU rRNA (cytosine-C 98.1 7.1E-05 1.5E-09 85.4 16.4 134 540-710 112-263 (470)
299 smart00138 MeTrc Methyltransfe 98.1 7.5E-06 1.6E-10 87.0 7.8 46 540-585 98-152 (264)
300 TIGR03587 Pse_Me-ase pseudamin 98.1 1.8E-05 4E-10 80.8 10.3 58 540-602 42-99 (204)
301 PF10672 Methyltrans_SAM: S-ad 98.1 2.8E-05 6.1E-10 83.0 11.5 133 41-180 102-240 (286)
302 TIGR03840 TMPT_Se_Te thiopurin 98.1 1.4E-05 3E-10 82.2 8.9 105 541-687 34-150 (213)
303 KOG1331 Predicted methyltransf 98.0 5E-06 1.1E-10 86.7 5.5 116 47-180 30-145 (293)
304 PRK05134 bifunctional 3-demeth 98.0 5.1E-05 1.1E-09 78.9 13.2 108 541-693 48-155 (233)
305 COG1092 Predicted SAM-dependen 98.0 3.1E-05 6.7E-10 85.9 11.9 130 46-181 201-339 (393)
306 PHA03412 putative methyltransf 98.0 2.6E-05 5.6E-10 80.4 10.2 57 542-603 50-109 (241)
307 PLN02672 methionine S-methyltr 98.0 3.9E-05 8.5E-10 94.6 13.5 121 542-695 119-284 (1082)
308 PF07942 N2227: N2227-like pro 98.0 4E-05 8.7E-10 80.9 11.8 121 50-178 37-202 (270)
309 KOG3045 Predicted RNA methylas 98.0 2.2E-05 4.8E-10 80.3 9.0 119 56-202 170-290 (325)
310 COG1352 CheR Methylase of chem 98.0 3.9E-05 8.4E-10 81.1 11.2 106 68-178 96-241 (268)
311 COG0220 Predicted S-adenosylme 98.0 8E-05 1.7E-09 77.0 13.2 123 543-699 50-172 (227)
312 COG1092 Predicted SAM-dependen 98.0 6.6E-05 1.4E-09 83.3 13.3 120 542-692 218-339 (393)
313 PLN02589 caffeoyl-CoA O-methyl 98.0 2.7E-05 5.9E-10 81.6 9.7 101 67-177 78-189 (247)
314 PF03141 Methyltransf_29: Puta 98.0 7.2E-06 1.6E-10 91.7 5.6 117 52-178 100-219 (506)
315 TIGR01983 UbiG ubiquinone bios 98.0 4E-05 8.7E-10 79.1 10.6 108 541-692 45-152 (224)
316 PRK12335 tellurite resistance 98.0 2.3E-05 5E-10 84.4 9.0 101 542-687 121-221 (287)
317 PF00891 Methyltransf_2: O-met 98.0 2.4E-05 5.3E-10 81.9 8.9 98 540-688 99-198 (241)
318 TIGR03438 probable methyltrans 98.0 0.00014 3.1E-09 78.8 15.0 114 540-689 62-177 (301)
319 PRK06202 hypothetical protein; 97.9 0.00012 2.6E-09 76.2 13.6 110 540-695 59-172 (232)
320 PRK05785 hypothetical protein; 97.9 0.00013 2.9E-09 75.7 13.0 89 541-682 51-140 (226)
321 PRK13255 thiopurine S-methyltr 97.9 3.5E-05 7.6E-10 79.5 8.5 104 541-686 37-152 (218)
322 KOG1661 Protein-L-isoaspartate 97.9 6E-05 1.3E-09 75.2 9.4 113 52-178 67-193 (237)
323 PRK15068 tRNA mo(5)U34 methylt 97.9 9.1E-05 2E-09 81.0 11.8 101 542-689 123-226 (322)
324 TIGR00095 RNA methyltransferas 97.9 0.00013 2.8E-09 73.6 12.0 107 542-689 50-159 (189)
325 KOG1269 SAM-dependent methyltr 97.9 1.9E-05 4.2E-10 87.0 6.4 107 67-180 109-217 (364)
326 COG0500 SmtA SAM-dependent met 97.9 0.00011 2.4E-09 68.3 10.7 102 72-183 52-160 (257)
327 PF01728 FtsJ: FtsJ-like methy 97.9 2.1E-05 4.6E-10 78.6 5.9 114 68-192 23-152 (181)
328 KOG4300 Predicted methyltransf 97.9 6E-05 1.3E-09 75.0 8.8 123 541-710 76-201 (252)
329 TIGR00479 rumA 23S rRNA (uraci 97.9 0.0001 2.2E-09 84.1 12.1 104 541-688 292-395 (431)
330 PF13489 Methyltransf_23: Meth 97.8 9.3E-05 2E-09 71.6 10.1 100 540-694 21-120 (161)
331 PF05185 PRMT5: PRMT5 arginine 97.8 4.4E-05 9.6E-10 86.8 8.9 101 542-686 187-294 (448)
332 PRK11933 yebU rRNA (cytosine-C 97.8 0.00012 2.7E-09 83.5 12.4 114 67-180 112-244 (470)
333 PRK04338 N(2),N(2)-dimethylgua 97.8 8.3E-05 1.8E-09 83.0 10.8 99 543-688 59-157 (382)
334 PRK03522 rumB 23S rRNA methylu 97.8 0.00012 2.6E-09 80.0 11.8 101 542-689 174-274 (315)
335 PF10672 Methyltrans_SAM: S-ad 97.8 0.00052 1.1E-08 73.4 16.2 128 513-692 108-241 (286)
336 TIGR01177 conserved hypothetic 97.8 0.00014 3E-09 80.0 11.8 111 541-692 182-297 (329)
337 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.00049 1.1E-08 74.9 16.0 181 42-225 23-235 (311)
338 PF03602 Cons_hypoth95: Conser 97.8 5E-05 1.1E-09 76.2 7.5 122 51-181 26-156 (183)
339 PF12147 Methyltransf_20: Puta 97.8 0.0003 6.6E-09 74.0 13.3 108 67-178 134-249 (311)
340 TIGR00452 methyltransferase, p 97.8 9.8E-05 2.1E-09 80.2 10.1 103 541-690 121-226 (314)
341 PF02475 Met_10: Met-10+ like- 97.8 0.00011 2.5E-09 74.5 9.9 113 46-175 84-199 (200)
342 TIGR02021 BchM-ChlM magnesium 97.8 7E-05 1.5E-09 77.2 8.5 101 540-687 54-156 (219)
343 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 8.5E-05 1.8E-09 78.0 9.0 153 22-180 13-201 (256)
344 PF03059 NAS: Nicotianamine sy 97.8 0.00013 2.8E-09 77.4 10.3 147 541-730 120-273 (276)
345 COG0030 KsgA Dimethyladenosine 97.8 0.00012 2.6E-09 76.7 10.0 85 54-143 19-104 (259)
346 PRK05031 tRNA (uracil-5-)-meth 97.8 0.00014 3E-09 80.9 11.0 58 70-128 208-266 (362)
347 KOG3178 Hydroxyindole-O-methyl 97.8 0.0001 2.2E-09 79.4 9.4 100 69-180 178-277 (342)
348 PRK04338 N(2),N(2)-dimethylgua 97.8 0.00013 2.8E-09 81.4 10.7 98 69-177 58-157 (382)
349 TIGR02143 trmA_only tRNA (urac 97.7 0.00015 3.2E-09 80.4 10.9 58 70-128 199-257 (353)
350 COG0421 SpeE Spermidine syntha 97.7 0.00031 6.6E-09 75.0 12.7 105 70-178 78-190 (282)
351 COG0293 FtsJ 23S rRNA methylas 97.7 0.00025 5.3E-09 71.6 11.2 116 67-193 44-173 (205)
352 TIGR02085 meth_trns_rumB 23S r 97.7 0.0002 4.4E-09 80.0 11.6 101 542-689 234-334 (374)
353 PRK13168 rumA 23S rRNA m(5)U19 97.7 0.00022 4.8E-09 81.6 12.2 104 541-689 297-400 (443)
354 KOG3010 Methyltransferase [Gen 97.7 6.8E-05 1.5E-09 76.5 7.0 104 542-691 34-139 (261)
355 PRK00536 speE spermidine synth 97.7 0.00039 8.4E-09 73.4 12.7 96 67-178 71-171 (262)
356 KOG0820 Ribosomal RNA adenine 97.7 0.00017 3.6E-09 74.7 9.5 83 57-142 47-131 (315)
357 PF01564 Spermine_synth: Sperm 97.7 0.00019 4.1E-09 75.5 10.1 108 68-178 76-191 (246)
358 PF03602 Cons_hypoth95: Conser 97.7 0.00014 3.1E-09 72.9 8.5 110 541-692 42-156 (183)
359 KOG2904 Predicted methyltransf 97.7 0.00037 8E-09 72.2 11.5 154 541-726 148-325 (328)
360 PRK11727 23S rRNA mA1618 methy 97.7 0.00035 7.5E-09 76.0 11.9 63 540-602 113-178 (321)
361 PF03848 TehB: Tellurite resis 97.7 0.00013 2.9E-09 73.3 8.0 105 541-690 30-134 (192)
362 KOG1709 Guanidinoacetate methy 97.6 0.00057 1.2E-08 68.4 11.9 128 540-717 100-228 (271)
363 PRK11727 23S rRNA mA1618 methy 97.6 0.00027 5.9E-09 76.8 10.6 81 68-148 114-203 (321)
364 PF13578 Methyltransf_24: Meth 97.6 3.7E-05 7.9E-10 69.8 3.1 98 546-688 1-104 (106)
365 COG2521 Predicted archaeal met 97.6 4.5E-05 9.6E-10 77.2 3.9 106 67-178 133-245 (287)
366 COG4976 Predicted methyltransf 97.6 3.1E-05 6.8E-10 78.0 2.6 102 540-690 124-226 (287)
367 PTZ00338 dimethyladenosine tra 97.6 0.0006 1.3E-08 73.5 12.7 61 541-603 36-97 (294)
368 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00032 7E-09 78.0 10.7 101 542-688 45-146 (374)
369 PLN02585 magnesium protoporphy 97.6 0.00046 1E-08 75.1 11.3 59 541-601 144-207 (315)
370 COG2263 Predicted RNA methylas 97.5 0.0005 1.1E-08 68.0 9.7 92 542-679 46-137 (198)
371 PF09243 Rsm22: Mitochondrial 97.5 0.00064 1.4E-08 72.7 11.4 126 50-183 15-144 (274)
372 COG0116 Predicted N6-adenine-s 97.5 0.0009 2E-08 73.5 12.6 123 55-180 181-346 (381)
373 PRK05031 tRNA (uracil-5-)-meth 97.5 0.0006 1.3E-08 75.9 11.4 113 543-689 208-320 (362)
374 TIGR02143 trmA_only tRNA (urac 97.5 0.0007 1.5E-08 75.0 11.9 62 543-606 199-260 (353)
375 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00027 5.9E-09 75.9 8.3 86 52-141 6-97 (296)
376 PF00398 RrnaAD: Ribosomal RNA 97.5 0.001 2.3E-08 70.6 12.7 106 50-170 15-123 (262)
377 PRK07580 Mg-protoporphyrin IX 97.5 0.00044 9.6E-09 71.5 9.7 57 541-599 63-120 (230)
378 PF02527 GidB: rRNA small subu 97.5 0.00032 7E-09 70.3 8.0 97 71-179 51-149 (184)
379 COG3963 Phospholipid N-methylt 97.5 0.0012 2.6E-08 63.8 11.4 111 540-691 47-158 (194)
380 PF01269 Fibrillarin: Fibrilla 97.5 0.0014 3.1E-08 66.7 12.4 126 45-180 50-180 (229)
381 PF05958 tRNA_U5-meth_tr: tRNA 97.5 0.00073 1.6E-08 74.9 11.3 127 54-199 186-329 (352)
382 COG0030 KsgA Dimethyladenosine 97.4 0.00026 5.7E-09 74.2 7.1 58 542-603 31-88 (259)
383 COG0742 N6-adenine-specific me 97.4 0.0027 5.9E-08 63.3 13.7 122 51-181 27-157 (187)
384 COG2520 Predicted methyltransf 97.4 0.00095 2.1E-08 72.8 11.5 123 46-184 171-295 (341)
385 PF07021 MetW: Methionine bios 97.4 0.00041 8.9E-09 69.2 7.9 61 540-608 12-72 (193)
386 PRK01747 mnmC bifunctional tRN 97.4 0.0011 2.4E-08 79.8 12.8 108 540-686 56-203 (662)
387 PF05891 Methyltransf_PK: AdoM 97.4 0.00036 7.7E-09 70.9 6.8 106 540-692 54-166 (218)
388 PF03059 NAS: Nicotianamine sy 97.4 0.0014 3.1E-08 69.4 11.3 131 43-179 95-231 (276)
389 PF05430 Methyltransf_30: S-ad 97.4 0.0014 2.9E-08 61.5 9.9 94 590-728 30-123 (124)
390 KOG1271 Methyltransferases [Ge 97.3 0.0012 2.6E-08 64.7 9.7 130 541-715 67-205 (227)
391 COG0357 GidB Predicted S-adeno 97.3 0.0015 3.2E-08 66.9 10.6 98 69-178 68-168 (215)
392 PF01269 Fibrillarin: Fibrilla 97.3 0.002 4.3E-08 65.6 11.1 140 540-727 72-226 (229)
393 TIGR00308 TRM1 tRNA(guanine-26 97.3 0.00077 1.7E-08 75.0 8.9 99 69-178 45-147 (374)
394 KOG1661 Protein-L-isoaspartate 97.3 0.00092 2E-08 66.9 8.5 101 541-690 82-194 (237)
395 PF01728 FtsJ: FtsJ-like methy 97.3 0.00049 1.1E-08 68.7 6.5 143 540-725 22-176 (181)
396 PRK00274 ksgA 16S ribosomal RN 97.3 0.00054 1.2E-08 73.2 7.0 58 541-603 42-99 (272)
397 COG0144 Sun tRNA and rRNA cyto 97.3 0.0036 7.8E-08 69.5 13.7 115 66-180 154-290 (355)
398 KOG3191 Predicted N6-DNA-methy 97.2 0.0032 6.8E-08 61.8 11.2 128 542-706 44-183 (209)
399 COG0144 Sun tRNA and rRNA cyto 97.2 0.0044 9.4E-08 68.8 13.8 137 540-711 155-310 (355)
400 PRK13256 thiopurine S-methyltr 97.2 0.0013 2.8E-08 68.0 9.0 135 541-715 43-193 (226)
401 KOG2915 tRNA(1-methyladenosine 97.2 0.0027 5.9E-08 66.0 11.0 111 55-180 95-212 (314)
402 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0042 9E-08 66.8 13.0 160 512-715 65-245 (283)
403 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0021 4.5E-08 69.2 10.0 65 542-608 20-85 (296)
404 COG1889 NOP1 Fibrillarin-like 97.1 0.0031 6.7E-08 62.9 10.0 124 44-177 52-179 (231)
405 PF05724 TPMT: Thiopurine S-me 97.1 0.002 4.3E-08 66.5 9.1 133 540-714 36-185 (218)
406 COG0742 N6-adenine-specific me 97.1 0.0042 9E-08 62.0 10.9 108 541-689 43-154 (187)
407 COG2265 TrmA SAM-dependent met 97.1 0.0025 5.3E-08 72.3 10.5 125 56-196 284-413 (432)
408 TIGR02987 met_A_Alw26 type II 97.1 0.0033 7.2E-08 73.5 12.0 100 47-146 6-124 (524)
409 TIGR02081 metW methionine bios 97.1 0.0015 3.2E-08 66.1 7.9 55 541-603 13-67 (194)
410 KOG1541 Predicted protein carb 97.1 0.0027 5.8E-08 64.1 9.3 129 541-715 50-187 (270)
411 PF11968 DUF3321: Putative met 97.1 0.0016 3.5E-08 66.0 7.7 92 69-180 52-151 (219)
412 PF10294 Methyltransf_16: Puta 97.1 0.0032 7E-08 62.6 9.8 125 540-706 44-172 (173)
413 PLN02232 ubiquinone biosynthes 97.1 0.0031 6.7E-08 61.8 9.5 82 569-693 1-85 (160)
414 KOG0820 Ribosomal RNA adenine 97.1 0.0026 5.5E-08 66.2 9.1 62 540-603 57-119 (315)
415 PRK14896 ksgA 16S ribosomal RN 97.0 0.0012 2.6E-08 70.0 6.9 59 541-603 29-87 (258)
416 KOG3987 Uncharacterized conser 97.0 0.00011 2.4E-09 72.8 -0.9 95 68-178 112-207 (288)
417 COG3897 Predicted methyltransf 97.0 0.0018 4E-08 64.2 7.5 117 57-185 67-186 (218)
418 KOG4589 Cell division protein 97.0 0.0091 2E-07 58.8 12.1 106 67-182 68-188 (232)
419 PF08123 DOT1: Histone methyla 97.0 0.0021 4.6E-08 65.6 7.8 104 66-177 40-157 (205)
420 TIGR00755 ksgA dimethyladenosi 97.0 0.0017 3.8E-08 68.5 7.4 59 541-603 29-87 (253)
421 PF04816 DUF633: Family of unk 97.0 0.0067 1.4E-07 62.0 11.2 122 72-205 1-126 (205)
422 KOG1663 O-methyltransferase [S 96.9 0.0085 1.8E-07 61.2 11.5 101 68-178 73-183 (237)
423 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.9 0.0046 1E-07 66.4 10.3 114 67-180 84-221 (283)
424 PF02475 Met_10: Met-10+ like- 96.8 0.0021 4.6E-08 65.3 6.5 98 540-685 100-198 (200)
425 PF13679 Methyltransf_32: Meth 96.8 0.0077 1.7E-07 57.7 9.9 98 67-177 24-130 (141)
426 PRK11760 putative 23S rRNA C24 96.8 0.0045 9.7E-08 67.2 9.0 70 67-143 210-279 (357)
427 PF02527 GidB: rRNA small subu 96.7 0.045 9.8E-07 54.9 15.0 95 544-689 51-148 (184)
428 KOG1709 Guanidinoacetate methy 96.7 0.0086 1.9E-07 60.3 9.5 105 67-178 100-206 (271)
429 COG4076 Predicted RNA methylas 96.7 0.0036 7.8E-08 61.5 6.6 59 543-603 34-92 (252)
430 PF01739 CheR: CheR methyltran 96.6 0.0032 6.8E-08 63.9 6.0 45 540-584 30-83 (196)
431 PF04672 Methyltransf_19: S-ad 96.6 0.01 2.2E-07 62.5 9.6 109 69-182 69-194 (267)
432 PF09445 Methyltransf_15: RNA 96.6 0.0031 6.8E-08 61.8 5.2 69 71-141 2-76 (163)
433 PF09445 Methyltransf_15: RNA 96.6 0.0047 1E-07 60.6 6.4 63 544-608 2-65 (163)
434 PF06962 rRNA_methylase: Putat 96.6 0.03 6.5E-07 53.4 11.6 124 93-222 1-140 (140)
435 PF08003 Methyltransf_9: Prote 96.5 0.0092 2E-07 63.7 8.8 103 541-690 115-220 (315)
436 PF00398 RrnaAD: Ribosomal RNA 96.5 0.0036 7.8E-08 66.5 5.7 78 511-603 10-88 (262)
437 KOG2915 tRNA(1-methyladenosine 96.5 0.052 1.1E-06 56.7 13.4 128 540-716 104-236 (314)
438 PRK10611 chemotaxis methyltran 96.4 0.0037 8E-08 67.1 5.2 44 541-584 115-166 (287)
439 PF13578 Methyltransf_24: Meth 96.4 0.0018 4E-08 58.5 2.1 96 73-178 1-105 (106)
440 COG4076 Predicted RNA methylas 96.3 0.0065 1.4E-07 59.8 5.7 99 69-175 33-132 (252)
441 PF12147 Methyltransf_20: Puta 96.3 0.051 1.1E-06 57.6 12.7 144 509-695 99-255 (311)
442 KOG2798 Putative trehalase [Ca 96.3 0.018 3.8E-07 61.2 8.9 121 50-178 131-296 (369)
443 COG4262 Predicted spermidine s 96.3 0.016 3.5E-07 62.4 8.8 106 68-179 289-408 (508)
444 PF01795 Methyltransf_5: MraW 96.2 0.03 6.4E-07 60.5 10.7 87 50-139 5-98 (310)
445 PF03291 Pox_MCEL: mRNA cappin 96.2 0.018 4E-07 63.1 9.2 147 541-731 62-238 (331)
446 PF05219 DREV: DREV methyltran 96.1 0.038 8.2E-07 57.8 10.2 94 541-690 94-189 (265)
447 KOG2730 Methylase [General fun 96.0 0.011 2.5E-07 59.6 5.8 75 68-144 94-175 (263)
448 KOG1122 tRNA and rRNA cytosine 96.0 0.033 7.2E-07 61.4 9.6 114 66-180 239-373 (460)
449 TIGR01444 fkbM_fam methyltrans 96.0 0.019 4.1E-07 54.6 7.1 57 71-127 1-59 (143)
450 COG1889 NOP1 Fibrillarin-like 95.9 0.21 4.6E-06 50.2 13.9 121 540-708 75-206 (231)
451 PRK04148 hypothetical protein; 95.9 0.025 5.5E-07 53.6 7.2 54 540-602 15-69 (134)
452 COG1352 CheR Methylase of chem 95.8 0.039 8.4E-07 58.6 9.3 44 541-584 96-148 (268)
453 COG1189 Predicted rRNA methyla 95.8 0.06 1.3E-06 55.5 10.1 97 67-178 78-178 (245)
454 KOG1499 Protein arginine N-met 95.8 0.03 6.4E-07 60.7 8.2 61 541-603 60-121 (346)
455 TIGR00006 S-adenosyl-methyltra 95.8 0.041 9E-07 59.4 9.4 76 50-128 5-81 (305)
456 COG0275 Predicted S-adenosylme 95.8 0.11 2.4E-06 55.4 12.2 63 66-128 21-85 (314)
457 COG0293 FtsJ 23S rRNA methylas 95.7 0.23 5E-06 50.5 13.7 143 541-728 45-200 (205)
458 COG0357 GidB Predicted S-adeno 95.7 0.21 4.5E-06 51.3 13.4 115 518-690 50-169 (215)
459 KOG0822 Protein kinase inhibit 95.7 0.029 6.2E-07 63.3 7.6 125 516-686 346-475 (649)
460 PRK10742 putative methyltransf 95.6 0.038 8.3E-07 57.7 7.7 67 540-608 87-162 (250)
461 TIGR02987 met_A_Alw26 type II 95.5 0.038 8.2E-07 64.8 8.2 63 541-603 31-101 (524)
462 KOG2361 Predicted methyltransf 95.4 0.022 4.7E-07 58.6 5.1 110 543-691 73-185 (264)
463 KOG3115 Methyltransferase-like 95.3 0.056 1.2E-06 54.1 7.4 108 68-180 60-185 (249)
464 COG4627 Uncharacterized protei 95.3 0.004 8.7E-08 59.4 -0.5 60 116-180 29-88 (185)
465 COG5459 Predicted rRNA methyla 95.2 0.095 2E-06 56.5 9.3 130 50-184 95-231 (484)
466 KOG1500 Protein arginine N-met 95.2 0.077 1.7E-06 56.7 8.5 101 542-686 178-279 (517)
467 COG2265 TrmA SAM-dependent met 95.1 0.2 4.4E-06 56.9 12.2 112 541-699 293-404 (432)
468 PF07091 FmrO: Ribosomal RNA m 95.0 0.063 1.4E-06 55.9 7.3 81 67-148 104-185 (251)
469 KOG0024 Sorbitol dehydrogenase 95.0 0.14 3.1E-06 54.9 10.0 48 540-588 168-216 (354)
470 PF01861 DUF43: Protein of unk 95.0 0.23 5E-06 51.5 11.2 105 541-693 44-153 (243)
471 COG2384 Predicted SAM-dependen 95.0 0.28 6.1E-06 50.1 11.5 135 56-206 9-146 (226)
472 KOG2187 tRNA uracil-5-methyltr 95.0 0.032 7E-07 63.0 5.3 81 47-128 361-443 (534)
473 KOG3178 Hydroxyindole-O-methyl 94.9 0.037 8E-07 60.0 5.5 95 542-691 178-279 (342)
474 KOG4589 Cell division protein 94.9 0.28 6.1E-06 48.7 10.9 148 541-731 69-228 (232)
475 TIGR01444 fkbM_fam methyltrans 94.8 0.06 1.3E-06 51.1 6.2 54 545-598 2-55 (143)
476 PF04989 CmcI: Cephalosporin h 94.7 0.11 2.3E-06 52.9 7.8 104 68-179 32-148 (206)
477 KOG3201 Uncharacterized conser 94.7 0.028 6E-07 54.2 3.3 119 67-192 28-154 (201)
478 TIGR00478 tly hemolysin TlyA f 94.6 0.084 1.8E-06 54.9 7.1 39 541-580 75-113 (228)
479 COG4798 Predicted methyltransf 94.5 0.15 3.3E-06 50.8 8.2 113 67-180 47-168 (238)
480 PF02384 N6_Mtase: N-6 DNA Met 94.4 0.1 2.2E-06 56.8 7.4 119 540-689 45-183 (311)
481 COG2520 Predicted methyltransf 94.4 0.29 6.4E-06 53.6 10.8 121 540-708 187-308 (341)
482 TIGR00006 S-adenosyl-methyltra 94.3 0.23 5E-06 53.8 9.7 65 543-608 22-86 (305)
483 KOG1975 mRNA cap methyltransfe 94.2 0.25 5.3E-06 53.0 9.4 122 541-707 117-250 (389)
484 COG1063 Tdh Threonine dehydrog 94.1 0.37 8.1E-06 53.4 11.4 102 544-694 171-274 (350)
485 PRK11760 putative 23S rRNA C24 94.1 0.3 6.5E-06 53.4 10.1 112 541-708 211-327 (357)
486 PF05958 tRNA_U5-meth_tr: tRNA 94.1 0.17 3.8E-06 56.1 8.6 128 544-708 199-326 (352)
487 KOG1596 Fibrillarin and relate 94.1 0.22 4.7E-06 51.2 8.4 106 64-179 152-262 (317)
488 PF01861 DUF43: Protein of unk 94.0 0.79 1.7E-05 47.6 12.5 103 68-180 44-150 (243)
489 PF07942 N2227: N2227-like pro 94.0 0.11 2.4E-06 55.1 6.5 132 540-689 55-201 (270)
490 PF04816 DUF633: Family of unk 94.0 0.21 4.6E-06 51.0 8.3 98 545-689 1-101 (205)
491 PF01170 UPF0020: Putative RNA 94.0 0.17 3.6E-06 50.6 7.4 106 541-686 28-148 (179)
492 PF05971 Methyltransf_10: Prot 93.8 0.45 9.8E-06 51.3 10.6 79 69-148 103-191 (299)
493 PF04989 CmcI: Cephalosporin h 93.8 0.26 5.6E-06 50.2 8.3 107 541-687 32-145 (206)
494 PRK10742 putative methyltransf 93.7 0.22 4.8E-06 52.0 7.9 86 57-146 78-176 (250)
495 KOG2730 Methylase [General fun 93.7 0.2 4.2E-06 51.0 7.1 50 554-608 108-160 (263)
496 KOG1122 tRNA and rRNA cytosine 93.6 0.34 7.5E-06 53.7 9.4 141 540-716 240-398 (460)
497 COG0275 Predicted S-adenosylme 93.5 0.37 8E-06 51.5 9.2 82 543-653 25-107 (314)
498 PF03141 Methyltransf_29: Puta 93.5 0.16 3.5E-06 57.7 6.9 123 69-204 366-492 (506)
499 PF09243 Rsm22: Mitochondrial 93.5 0.52 1.1E-05 50.5 10.6 46 540-585 32-78 (274)
500 PF07757 AdoMet_MTase: Predict 93.4 0.12 2.5E-06 46.8 4.5 46 53-99 42-88 (112)
No 1
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-66 Score=563.49 Aligned_cols=451 Identities=41% Similarity=0.648 Sum_probs=411.3
Q ss_pred hhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCC-eEEEEcCCcchhHHHHHhcCCCeEEE
Q 004164 18 LLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPP-QILVPGCGNSRLSEHLYDAGFHGITN 96 (771)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~-~ILDiGCG~G~ls~~La~~g~~~V~~ 96 (771)
+|++...|.+..||++||..++ ..+++||+.|..++..+..++. +.. ++|.+|||++.++..+++.|+..|+.
T Consensus 3 ~p~~~~~~~s~~~wd~rf~~rg-~~~~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~ 76 (482)
T KOG2352|consen 3 LPQEQLSFGSVVYWDKRFQPRG-SDPFEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITN 76 (482)
T ss_pred CcccccccCcchhhhhhccccC-CChHHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCcee
Confidence 7889999999999999999986 7899999999999999999985 455 99999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchH---HHHHHHHHHHHccccCeE
Q 004164 97 VDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHK---LGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 97 vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~---~~~~~l~~i~rvLkpGG~ 173 (771)
+|+|+.+++.|..++....+.+.+..+|+..+.|++++||+|+++|++|++..++.... .+..++.+++|+|++||+
T Consensus 77 iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 77 IDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred ccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCE
Confidence 99999999999999887778999999999999999999999999999999998775543 478889999999999999
Q ss_pred EEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCCCccEEEEEEEcCCccccccccccccCcCcCCcchHHHHHHH
Q 004164 174 FVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPSLQTFMVVADKENSSVVLQVTSSFDHSSLDCNKNQAFGIHEA 253 (771)
Q Consensus 174 ~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~ 253 (771)
++.+++.+
T Consensus 157 ~~svtl~~------------------------------------------------------------------------ 164 (482)
T KOG2352|consen 157 YISVTLVQ------------------------------------------------------------------------ 164 (482)
T ss_pred EEEEEeee------------------------------------------------------------------------
Confidence 99888774
Q ss_pred HHHHHHHHHHccCCCccchhhhhhhccccccccccCCCceEEEEeCCCCCceeeEEEEEEeCCCCCCCCcccEEEEEeeC
Q 004164 254 LESENQTRREYSHGSDILYSLEDLQLGAKGDMKNLSPGCRFELILGGEGDFCFSYRAVLLDARENSGPFMYNCGVFIVPK 333 (771)
Q Consensus 254 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~y~~~v~D~~~~~~~~~~~~a~fiVP~ 333 (771)
+||+
T Consensus 165 ----------------------------------------------------------------------------~vp~ 168 (482)
T KOG2352|consen 165 ----------------------------------------------------------------------------VVPQ 168 (482)
T ss_pred ----------------------------------------------------------------------------eccC
Confidence 8999
Q ss_pred CCccccccCChhhhHHHHHhcCCCEEEEEEecCCCCCCc--hHHHHHhhhHHHHhcCCCCCCCCCCccEEeccCCceeee
Q 004164 334 TRAHEWLFSSEEGQWLVVESSKAARLIMVLLDTSHASAS--MDEIQKDLSPLVKQLAPGKDDQGAQIPFMMAGDGIKHRN 411 (771)
Q Consensus 334 gre~ewlfst~~G~~~l~~sa~~~RLi~v~l~~~~~~~~--~~~v~~el~~~v~~l~p~~~~~~~~ip~l~~~~~~~~r~ 411 (771)
||+++|+|+++.|++++..+++..||++|.+++++.+.. +++++..+++.+..+.|+++++..+.|+++.|+++
T Consensus 169 ~r~~e~~~~~p~G~~~~~~~s~~~~l~~v~l~~gq~~~~~~~~~~~~~~s~~~~~l~~~g~~~~~q~~~ls~g~d~---- 244 (482)
T KOG2352|consen 169 GRKPEWLFGSPGGSKQMNVSSSGERLAIVALHRGQQYSTPQEDEVQDPLSPFRRQLDPKGEPTQQQREILSIGEDV---- 244 (482)
T ss_pred CCCeeeeecCccchhhhhhhccCcceEEEEeccCccccchHHhhhccccccceeecccccCChhhhhccccccccc----
Confidence 999999999999999999999999999999999999998 89999999999999999999888899999877533
Q ss_pred EEEEEecCCccCEEEEEeecccCCCCcccCCCCCCceeeEEEecCCCCceeeeeEeeccCCCCCcchhhhhhhccccccc
Q 004164 412 VVHQATSSLTGPIIVEDLVYENVDPEFSRIWPSEDLKFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKS 491 (771)
Q Consensus 412 ~~~~~~s~~~g~~~Vedv~~e~~~~~~~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
..|||.+..|.|++|||++..
T Consensus 245 ------------------------------------~~~~l~~~~n~nv~q~~~k~~----------------------- 265 (482)
T KOG2352|consen 245 ------------------------------------GVRRLPPCGNMNVVQSEAKKD----------------------- 265 (482)
T ss_pred ------------------------------------ccccccCCCCcceecCchhcc-----------------------
Confidence 356677777999999996110
Q ss_pred cccCcccCCCCCCCceeecCCccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEE
Q 004164 492 KRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAV 571 (771)
Q Consensus 492 ~~~~~~~~~~~~~~~~~vd~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~V 571 (771)
...||+|+||+.|++|++|+..... ...+...++||+|+|||.|++||+.++|..++++|
T Consensus 266 ------------------r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~v 325 (482)
T KOG2352|consen 266 ------------------RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAV 325 (482)
T ss_pred ------------------cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEE
Confidence 1228999999999999999876553 23467789999999999999999999999999999
Q ss_pred EcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC
Q 004164 572 ELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD 651 (771)
Q Consensus 572 EiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~ 651 (771)
|+||.|+++|++||||.++.|.+||+.||++|+++..+.. .++.+||+|++|+|
T Consensus 326 e~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~--------------------------~~~~~~dvl~~dvd 379 (482)
T KOG2352|consen 326 EIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQ--------------------------QEDICPDVLMVDVD 379 (482)
T ss_pred EEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhcc--------------------------ccccCCcEEEEECC
Confidence 9999999999999999988899999999999999987421 23578999999999
Q ss_pred CCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecCCC
Q 004164 652 SPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSSES 731 (771)
Q Consensus 652 s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~~ 731 (771)
++| +.||+|||+.|++..+|..++..|.|.|+|++|+++|+..++++++..|+++|+++|.+++++++|.|++|...+.
T Consensus 380 s~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 380 SKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPK 458 (482)
T ss_pred CCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChh
Confidence 999 8999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred c
Q 004164 732 C 732 (771)
Q Consensus 732 ~ 732 (771)
.
T Consensus 459 ~ 459 (482)
T KOG2352|consen 459 Q 459 (482)
T ss_pred c
Confidence 4
No 2
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=2.2e-29 Score=265.78 Aligned_cols=213 Identities=22% Similarity=0.341 Sum_probs=183.1
Q ss_pred eeeEEEecCCCCceeeeeEeeccCCCCCcchhhhhhhccccccccccCcccCCCCCCCceeecCCccchhHHHHHHHHhh
Q 004164 448 KFRRLVFQRTQGLVQSEALLMRDGSSHRTDVETERKKASSSSKSKRKGTQRRSDDSGNQLKVYHGYLASSYHMGIISGFT 527 (771)
Q Consensus 448 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~L~~~Y~~~m~~~l~ 527 (771)
-+|.|.| +.+.+||.+.+. ||..|.++|+++|++++.
T Consensus 26 ~~R~L~f--~~~~~qs~~~~~-----------------------------------------~P~~l~~~y~~~m~~~l~ 62 (262)
T PRK04457 26 GVRSLHL--GSDTVQSSMRID-----------------------------------------DPSELELAYTRAMMGFLL 62 (262)
T ss_pred CEEEEEE--CCCcceeeeecC-----------------------------------------CcccccCHHHHHHHHHHh
Confidence 4999999 667999997764 467788999999997765
Q ss_pred hhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHh
Q 004164 528 LISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVRE 606 (771)
Q Consensus 528 l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~ 606 (771)
+. +.+.+||+||+|+|+++.+++..+|..+|++||+||+|+++|+++|++.. +++++++++||.+|+.+
T Consensus 63 ~~----------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 63 FN----------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV 132 (262)
T ss_pred cC----------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh
Confidence 43 45678999999999999999999999999999999999999999998864 58999999999999976
Q ss_pred hccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 607 MKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.. .+||+|++|.++... +|..+.+.+|++.++++|+|||+|+
T Consensus 133 ~~--------------------------------~~yD~I~~D~~~~~~------~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 133 HR--------------------------------HSTDVILVDGFDGEG------IIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred CC--------------------------------CCCCEEEEeCCCCCC------CccccCcHHHHHHHHHhcCCCcEEE
Confidence 43 579999999876531 4778999999999999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhccc-eEEeeecCCccEEEEEecC-CCcCCCCCHHHHHHHHhhhhcCC
Q 004164 687 VNLVSRSQATKDMVISRMKMVFNH-LFCLQLEEDVNLVLFGLSS-ESCIKDNSFPEAAVQLGKLVKFQ 752 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~~-v~~~~~~~~~N~Vl~a~~~-~~~~~~~~l~~~a~~l~~~~~~~ 752 (771)
+|++.++.. ...++++++++|++ ++.++..+++|.|+||++. +.......|.++|+.+++.++++
T Consensus 175 in~~~~~~~-~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~l~~~~~~~ 241 (262)
T PRK04457 175 VNLWSRDKR-YDRYLERLESSFEGRVLELPAESHGNVAVFAFKSAPKELRWDKLRKRAKKLENEHGLD 241 (262)
T ss_pred EEcCCCchh-HHHHHHHHHHhcCCcEEEEecCCCccEEEEEECCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999988765 45679999999985 7888888889999999985 43556677999999999888776
No 3
>PLN02823 spermine synthase
Probab=99.91 E-value=3.2e-23 Score=224.71 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=141.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC----CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT----QDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~----~~~ 591 (771)
+.||..|+ ++++..+ +.+++||+||+|+|++++.+..+.+..+|++|||||.|+++|++||.+. .++
T Consensus 87 ~~YhE~l~-h~~l~~~--------~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dp 157 (336)
T PLN02823 87 FVYHESLV-HPALLHH--------PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDK 157 (336)
T ss_pred HHHHHHHH-hHHHhhC--------CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCC
Confidence 45988555 4444443 5678999999999999998888877779999999999999999999764 479
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||++||++.. .+||+||+|+..+ .. .+|+..|++.+|
T Consensus 158 rv~v~~~Da~~~L~~~~--------------------------------~~yDvIi~D~~dp--~~--~~~~~~Lyt~eF 201 (336)
T PLN02823 158 RLELIINDARAELEKRD--------------------------------EKFDVIIGDLADP--VE--GGPCYQLYTKSF 201 (336)
T ss_pred ceEEEEChhHHHHhhCC--------------------------------CCccEEEecCCCc--cc--cCcchhhccHHH
Confidence 99999999999997643 6799999998543 22 135788999999
Q ss_pred HH-HHHHccCCCcEEEEEeccC----ChhHHHHHHHHHHHhccceEEeee--c--CCccEEEEEecCCCc-CCCCCHHHH
Q 004164 672 LL-TVKDALSEQGLFIVNLVSR----SQATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSESC-IKDNSFPEA 741 (771)
Q Consensus 672 l~-~~~~~L~~~Gilv~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~~-~~~~~l~~~ 741 (771)
|+ .++++|+|+|++++|..+. .......++++|+++|++++.+.. + .+....++|++.+.. ++...+.++
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~ 281 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSR 281 (336)
T ss_pred HHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHh
Confidence 99 9999999999999998653 245677899999999999877653 2 223567888886532 333334444
Q ss_pred H
Q 004164 742 A 742 (771)
Q Consensus 742 a 742 (771)
.
T Consensus 282 ~ 282 (336)
T PLN02823 282 I 282 (336)
T ss_pred h
Confidence 3
No 4
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.9e-22 Score=212.99 Aligned_cols=187 Identities=21% Similarity=0.392 Sum_probs=141.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC----CC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ----DK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~----~~ 591 (771)
+.|| .|++++++.++ +.+++||+||+|.|++++.+.++.+..++++|||||.|+++||+||+... |+
T Consensus 60 ~~yh-Eml~h~~~~ah--------~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dp 130 (282)
T COG0421 60 FIYH-EMLAHVPLLAH--------PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDP 130 (282)
T ss_pred HHHH-HHHHhchhhhC--------CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCC
Confidence 4554 57778887776 77789999999999999999999988899999999999999999997655 89
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||.+||++.. .+||+||+|.+.+. + |.+.|++.+|
T Consensus 131 Rv~i~i~Dg~~~v~~~~--------------------------------~~fDvIi~D~tdp~--g----p~~~Lft~eF 172 (282)
T COG0421 131 RVEIIIDDGVEFLRDCE--------------------------------EKFDVIIVDSTDPV--G----PAEALFTEEF 172 (282)
T ss_pred ceEEEeccHHHHHHhCC--------------------------------CcCCEEEEcCCCCC--C----cccccCCHHH
Confidence 99999999999999875 47999999876552 2 7899999999
Q ss_pred HHHHHHccCCCcEEEEEe---ccCChhHHHHHHHHHHHhccce--EEeeecC--Cc-cEEEEEecCCC-cCC-CCCHHHH
Q 004164 672 LLTVKDALSEQGLFIVNL---VSRSQATKDMVISRMKMVFNHL--FCLQLEE--DV-NLVLFGLSSES-CIK-DNSFPEA 741 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl---~~~~~~~~~~v~~~l~~vF~~v--~~~~~~~--~~-N~Vl~a~~~~~-~~~-~~~l~~~ 741 (771)
++.|+++|+++|+++.|. +... +....+...++++|+.+ |...++. .. ..+.+++.... ... .+..+.+
T Consensus 173 y~~~~~~L~~~Gi~v~q~~~~~~~~-~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~~~~~~~~~ 251 (282)
T COG0421 173 YEGCRRALKEDGIFVAQAGSPFLQD-EEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLKSLDALQAR 251 (282)
T ss_pred HHHHHHhcCCCcEEEEecCCcccch-HHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCcccchhHHHHH
Confidence 999999999999999993 2222 33456678899999843 3333333 22 34666663332 222 2234445
Q ss_pred HHHHhhhhcC
Q 004164 742 AVQLGKLVKF 751 (771)
Q Consensus 742 a~~l~~~~~~ 751 (771)
+..+ ..+++
T Consensus 252 ~~~~-~~~~y 260 (282)
T COG0421 252 ALAL-LTLKY 260 (282)
T ss_pred Hhhh-hhhcc
Confidence 5555 44454
No 5
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.89 E-value=2.5e-22 Score=209.90 Aligned_cols=169 Identities=24% Similarity=0.383 Sum_probs=132.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||+.|+ ++++..+ +++++||+||+|+|++++.+.++.+..+|++|||||.|+++|++||+. ..|+
T Consensus 60 ~~y~e~l~-h~~~~~~--------~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~ 130 (246)
T PF01564_consen 60 FIYHEMLV-HPPLLLH--------PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDP 130 (246)
T ss_dssp HHHHHHHH-HHHHHHS--------SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGST
T ss_pred HHHHHHHh-hhHhhcC--------CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCC
Confidence 57888665 4455544 678999999999999999999987778999999999999999999954 2589
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
|++++++||+.||++.. ..+||+||+|+..++. |+..+++.+|
T Consensus 131 r~~i~~~Dg~~~l~~~~-------------------------------~~~yDvIi~D~~dp~~------~~~~l~t~ef 173 (246)
T PF01564_consen 131 RVRIIIGDGRKFLKETQ-------------------------------EEKYDVIIVDLTDPDG------PAPNLFTREF 173 (246)
T ss_dssp TEEEEESTHHHHHHTSS-------------------------------ST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred ceEEEEhhhHHHHHhcc-------------------------------CCcccEEEEeCCCCCC------CcccccCHHH
Confidence 99999999999999865 1289999999977532 4556999999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEe--eecCC-ccEEEEEecCC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCL--QLEED-VNLVLFGLSSE 730 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~--~~~~~-~N~Vl~a~~~~ 730 (771)
++.++++|+|+|++++|..+. .......+.++++++|+++..+ .++.. .+...|+..+.
T Consensus 174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~ 237 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASK 237 (246)
T ss_dssp HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEES
T ss_pred HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeC
Confidence 999999999999999998443 4566678889999999976554 44443 34455555444
No 6
>PRK00811 spermidine synthase; Provisional
Probab=99.87 E-value=6.4e-21 Score=203.72 Aligned_cols=167 Identities=24% Similarity=0.339 Sum_probs=134.3
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-----FTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-----~~~~ 590 (771)
+.||. |++++++..+ +.+.+||+||+|+|.+++.+..+.+..+|++|||||.|+++|++||. ..++
T Consensus 60 ~~Y~e-~l~h~~~~~~--------~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d 130 (283)
T PRK00811 60 FIYHE-MMTHVPLFAH--------PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDD 130 (283)
T ss_pred hhHHH-HhhhHHHhhC--------CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccC
Confidence 57887 5556666654 67889999999999999988887666699999999999999999993 3368
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++|+++.. .+||+||+|+..+. +|+..+++.+
T Consensus 131 ~rv~v~~~Da~~~l~~~~--------------------------------~~yDvIi~D~~dp~------~~~~~l~t~e 172 (283)
T PRK00811 131 PRVELVIGDGIKFVAETE--------------------------------NSFDVIIVDSTDPV------GPAEGLFTKE 172 (283)
T ss_pred CceEEEECchHHHHhhCC--------------------------------CcccEEEECCCCCC------CchhhhhHHH
Confidence 999999999999997632 67999999875432 3677899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--cC---CccEEEEEecC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--EE---DVNLVLFGLSS 729 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~~---~~N~Vl~a~~~ 729 (771)
|++.++++|+|||++++|..+. +......++++|+++|+++..+.. +. +....++|++.
T Consensus 173 f~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 9999999999999999987543 355667889999999999866653 22 22345778774
No 7
>PLN02366 spermidine synthase
Probab=99.86 E-value=2.7e-20 Score=199.99 Aligned_cols=169 Identities=21% Similarity=0.329 Sum_probs=133.4
Q ss_pred chhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCC
Q 004164 515 ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQD 590 (771)
Q Consensus 515 ~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~ 590 (771)
.+.||. |++++++..+ +.+.+||+||+|+|++++.+.++.+..+|++||||+.|+++|++||.. ..+
T Consensus 74 e~~Y~e-~l~h~~l~~~--------~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d 144 (308)
T PLN02366 74 ECAYQE-MITHLPLCSI--------PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDD 144 (308)
T ss_pred HHHHHH-HHHHHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCC
Confidence 356866 6667777654 678999999999999999998885556999999999999999999942 258
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+|++++++||++|+++.. +.+||+||+|++.+. .|+..+++.+
T Consensus 145 pRv~vi~~Da~~~l~~~~-------------------------------~~~yDvIi~D~~dp~------~~~~~L~t~e 187 (308)
T PLN02366 145 PRVNLHIGDGVEFLKNAP-------------------------------EGTYDAIIVDSSDPV------GPAQELFEKP 187 (308)
T ss_pred CceEEEEChHHHHHhhcc-------------------------------CCCCCEEEEcCCCCC------CchhhhhHHH
Confidence 899999999999998753 257999999875542 2678899999
Q ss_pred HHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhcc-ceEE--eeecC---CccEEEEEecC
Q 004164 671 FLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFN-HLFC--LQLEE---DVNLVLFGLSS 729 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~-~v~~--~~~~~---~~N~Vl~a~~~ 729 (771)
||+.++++|+|||+++.|.-+. .......++++|+++|+ .+.. ..++. +....++|++.
T Consensus 188 f~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 188 FFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 9999999999999999876432 34556788999999994 5433 23332 23557788776
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=99.82 E-value=4.2e-19 Score=191.28 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=131.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-------
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------- 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------- 588 (771)
+.||..|+. .++..+ +.+.+||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+.
T Consensus 134 ~iYHE~Lvh-p~m~~h--------~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~ 204 (374)
T PRK01581 134 QIYHEALVH-PIMSKV--------IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF 204 (374)
T ss_pred HHHHHHHHH-HHHHhC--------CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC
Confidence 458886664 444443 6788999999999999888888766679999999999999999976543
Q ss_pred CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc
Q 004164 589 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 668 (771)
Q Consensus 589 ~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~ 668 (771)
.++|++++++||++|++... .+||+||+|+..+ .. .++..+++
T Consensus 205 ~DpRV~vvi~Da~~fL~~~~--------------------------------~~YDVIIvDl~DP--~~---~~~~~LyT 247 (374)
T PRK01581 205 FDNRVNVHVCDAKEFLSSPS--------------------------------SLYDVIIIDFPDP--AT---ELLSTLYT 247 (374)
T ss_pred CCCceEEEECcHHHHHHhcC--------------------------------CCccEEEEcCCCc--cc---cchhhhhH
Confidence 57999999999999998643 5799999997543 21 24688999
Q ss_pred HHHHHHHHHccCCCcEEEEEeccCC--hhHHHHHHHHHHHhccceEEeee--c--CCccEEEEEecCCC
Q 004164 669 GSFLLTVKDALSEQGLFIVNLVSRS--QATKDMVISRMKMVFNHLFCLQL--E--EDVNLVLFGLSSES 731 (771)
Q Consensus 669 ~~fl~~~~~~L~~~Gilv~Nl~~~~--~~~~~~v~~~l~~vF~~v~~~~~--~--~~~N~Vl~a~~~~~ 731 (771)
.+||+.++++|+|||+|+++.-+.. ......+..+|+++|..+..+.. + .+....++|++.+.
T Consensus 248 ~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~ 316 (374)
T PRK01581 248 SELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAY 316 (374)
T ss_pred HHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCcc
Confidence 9999999999999999998854432 22335578999999997655543 2 23356777877653
No 9
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.78 E-value=1.6e-17 Score=176.66 Aligned_cols=167 Identities=21% Similarity=0.316 Sum_probs=131.4
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC----CCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF----TQDK 591 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~----~~~~ 591 (771)
..||. |++++++..+ +.+.+||+||+|+|.++..+..+.+..++++||+|+.|++.|+++|.. ..++
T Consensus 56 ~~y~e-~l~~~~l~~~--------~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~ 126 (270)
T TIGR00417 56 FIYHE-MIAHVPLFTH--------PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP 126 (270)
T ss_pred HHHHH-HhhhhHhhcC--------CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC
Confidence 56876 4555555544 567799999999999998888876667999999999999999999832 3578
Q ss_pred CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHH
Q 004164 592 SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSF 671 (771)
Q Consensus 592 r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~f 671 (771)
+++++++||++|+++.. .+||+||+|...+. .|+..+++.+|
T Consensus 127 ~v~i~~~D~~~~l~~~~--------------------------------~~yDvIi~D~~~~~------~~~~~l~~~ef 168 (270)
T TIGR00417 127 RVDLQIDDGFKFLADTE--------------------------------NTFDVIIVDSTDPV------GPAETLFTKEF 168 (270)
T ss_pred ceEEEECchHHHHHhCC--------------------------------CCccEEEEeCCCCC------CcccchhHHHH
Confidence 99999999999998643 57999999875432 24677899999
Q ss_pred HHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEeee--c---CCccEEEEEecC
Q 004164 672 LLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQL--E---EDVNLVLFGLSS 729 (771)
Q Consensus 672 l~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~~--~---~~~N~Vl~a~~~ 729 (771)
++.++++|+|||++++|..+. .......+.++++++|+++..+.. + .+....++|++.
T Consensus 169 ~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 999999999999999985443 245566778999999998755543 2 334678888873
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=7.5e-18 Score=173.32 Aligned_cols=127 Identities=24% Similarity=0.434 Sum_probs=111.0
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
++....+++.+...+.. .++.+|||+|||||.++..+++. |.++|+++|+|+.|++.++++....+ .+++|+.+|
T Consensus 33 ~g~~~~Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d 109 (238)
T COG2226 33 FGLHRLWRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD 109 (238)
T ss_pred CcchHHHHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEec
Confidence 44455556667777664 47999999999999999999987 66799999999999999999987654 349999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++++||+|++||+|.+...|+++.+. +++|+|++|+|||||+++|.+++++.
T Consensus 110 Ae~LPf~D~sFD~vt~~fglrnv~d~-------~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 110 AENLPFPDNSFDAVTISFGLRNVTDI-------DKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hhhCCCCCCccCEEEeeehhhcCCCH-------HHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999999999999999874 49999999999999999999998764
No 11
>PRK00536 speE spermidine synthase; Provisional
Probab=99.73 E-value=6.5e-17 Score=169.05 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=122.6
Q ss_pred ceeecCCcc-----chhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004164 506 QLKVYHGYL-----ASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 580 (771)
Q Consensus 506 ~~~vd~~~L-----~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v 580 (771)
++.+| ..+ .+-||. |+++.+|.+| +.|++|||||+|.|++.+-+.++ |. +|+.||||++|+++
T Consensus 42 ~LvLD-~~~~te~dEfiYHE-mLvHppl~~h--------~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~ 109 (262)
T PRK00536 42 IAMLN-KQLLFKNFLHIESE-LLAHMGGCTK--------KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDS 109 (262)
T ss_pred EEEEe-eeeeecchhhhHHH-HHHHHHHhhC--------CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHH
Confidence 45566 433 356765 6777888877 88999999999999998877777 44 99999999999999
Q ss_pred HHhhc-----CCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCC
Q 004164 581 AEDYF-----GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDS 655 (771)
Q Consensus 581 A~~~F-----g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~ 655 (771)
||+|| ++ +|+|+++++ ++.+.. .++||+||+|. .
T Consensus 110 ~k~~lP~~~~~~-~DpRv~l~~-----~~~~~~-------------------------------~~~fDVIIvDs--~-- 148 (262)
T PRK00536 110 FISFFPHFHEVK-NNKNFTHAK-----QLLDLD-------------------------------IKKYDLIICLQ--E-- 148 (262)
T ss_pred HHHHCHHHHHhh-cCCCEEEee-----hhhhcc-------------------------------CCcCCEEEEcC--C--
Confidence 99998 33 789999997 333321 25799999973 1
Q ss_pred CCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHhccceEEee--ecC-CccEEEEEecCC
Q 004164 656 SSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSE 730 (771)
Q Consensus 656 ~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~ 730 (771)
.+++|++.++++|+|+|+++...-+. .......+.++++++|+.+..+. ++. +....++|++..
T Consensus 149 -----------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 149 -----------PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred -----------CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 34899999999999999999876444 35666788999999999764443 222 345577787653
No 12
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.72 E-value=4e-17 Score=156.34 Aligned_cols=172 Identities=29% Similarity=0.448 Sum_probs=128.5
Q ss_pred hhhhccCCCCHhhHHHHHhhcC-----CCCcc-ccccchhHHHHHHHHhhCC----CC-CCCCCeEEEEcCCcchhHHHH
Q 004164 18 LLQTLGDFTSKENWDKFFTIRG-----IGDSF-EWYAEWPQLRDPLISLIGA----PT-SSPPPQILVPGCGNSRLSEHL 86 (771)
Q Consensus 18 lP~~~~~f~~~~yWd~~y~~~~-----~~~~~-ew~~~~~~l~~~l~~~l~~----~~-~~~~~~ILDiGCG~G~ls~~L 86 (771)
++.+. .+.++||++.|.... +++.- -|++.-. ...+..|+.. .+ .....+|||+|||||.+...|
T Consensus 10 l~~S~--LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~a--e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L 85 (227)
T KOG1271|consen 10 LGQSK--LGTKSYWDAAYELELTNFREHGDEGEVWFGEDA--EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQL 85 (227)
T ss_pred ccccc--cchHHHHHHHHHHHHhhcccCCCccceecCCcH--HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHH
Confidence 44443 678999999997652 12222 2888643 3345555432 11 123459999999999999999
Q ss_pred HhcCCCe-EEEEcCCHHHHHHHHHHhhcCC-CC-cEEEEeecCCCCCCCCCccEEEeccccccccCcccchHH-HHHHHH
Q 004164 87 YDAGFHG-ITNVDFSKVVISDMLRRNVRDR-SD-MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKL-GNQYLS 162 (771)
Q Consensus 87 a~~g~~~-V~~vDiS~~~i~~~~~~~~~~~-~~-i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~-~~~~l~ 162 (771)
++.|+.. .+|+|+|+.+++.|+..+.... ++ |+|.+.|+.+..+..++||+|+++|+++++.-..++... ...++.
T Consensus 86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d 165 (227)
T KOG1271|consen 86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLD 165 (227)
T ss_pred HHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehh
Confidence 9999844 9999999999998876665544 33 999999999988888999999999999998744323222 367899
Q ss_pred HHHHccccCeEEEEEEcCcchhhcchhhhhccC
Q 004164 163 EVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFG 195 (771)
Q Consensus 163 ~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~ 195 (771)
.+.++|+|||+|+|.+.. +...++...+..+
T Consensus 166 ~v~~ll~~~gifvItSCN--~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 166 SVEKLLSPGGIFVITSCN--FTKDELVEEFENF 196 (227)
T ss_pred hHhhccCCCcEEEEEecC--ccHHHHHHHHhcC
Confidence 999999999999998865 6667777777543
No 13
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=4.6e-15 Score=170.54 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=94.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC--CCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS--MQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~--l~~~~~ 133 (771)
.+.+.+.. .++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.+++.. ...+++.++++|+.+ ++++++
T Consensus 28 ~il~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~-~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 28 EILSLLPP---YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESIN-GHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred HHHhhcCc---cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHh-ccCCceEEEEecccccccCCCCC
Confidence 35555543 4567999999999999999998854 8999999999998765433 334689999999963 577889
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+||+|++..+++++.+.+ ...+++++.++|||||++++.+.
T Consensus 103 ~fD~I~~~~~l~~l~~~~-----~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKE-----VENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCCHHH-----HHHHHHHHHHhcCCCeEEEEEec
Confidence 999999999999987644 67999999999999999988764
No 14
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=8.9e-17 Score=166.76 Aligned_cols=121 Identities=26% Similarity=0.448 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ 129 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~ 129 (771)
++..+.+.+.. .++.+|||+|||||.++..+++. + .++|+++|+|+.|++.++++....+ .+++|+++|++++|
T Consensus 35 wr~~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp 111 (233)
T PF01209_consen 35 WRRKLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP 111 (233)
T ss_dssp --SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--
T ss_pred HHHHHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc
Confidence 33445555543 57889999999999999999886 3 3699999999999999998876543 58999999999999
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
+++++||+|++...++.+.+. .++++|++|+|||||++++++++.+.
T Consensus 112 ~~d~sfD~v~~~fglrn~~d~-------~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 112 FPDNSFDAVTCSFGLRNFPDR-------ERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-TT-EEEEEEES-GGG-SSH-------HHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CCCCceeEEEHHhhHHhhCCH-------HHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999999999998764 48999999999999999999998654
No 15
>PRK03612 spermidine synthase; Provisional
Probab=99.65 E-value=2.2e-15 Score=174.09 Aligned_cols=168 Identities=17% Similarity=0.254 Sum_probs=124.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-------C
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------T 588 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-------~ 588 (771)
..||..++ +.++..+ +++++||+||+|+|.+++.+.++.+..+|++|||||+|+++|+++|.+ .
T Consensus 281 ~~y~e~l~-~~~l~~~--------~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~ 351 (521)
T PRK03612 281 YRYHEALV-HPAMAAS--------ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL 351 (521)
T ss_pred HHHHHHHH-HHHHhhC--------CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc
Confidence 34776544 4444433 567899999999999999888764336999999999999999996533 2
Q ss_pred CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc
Q 004164 589 QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE 668 (771)
Q Consensus 589 ~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~ 668 (771)
+++|++++++||++|+++.. ++||+||+|...+... .+..+++
T Consensus 352 ~dprv~vi~~Da~~~l~~~~--------------------------------~~fDvIi~D~~~~~~~-----~~~~L~t 394 (521)
T PRK03612 352 DDPRVTVVNDDAFNWLRKLA--------------------------------EKFDVIIVDLPDPSNP-----ALGKLYS 394 (521)
T ss_pred CCCceEEEEChHHHHHHhCC--------------------------------CCCCEEEEeCCCCCCc-----chhccch
Confidence 46899999999999997643 5799999986443210 1467999
Q ss_pred HHHHHHHHHccCCCcEEEEEeccC--ChhHHHHHHHHHHHh-ccceEEe--eecCC-ccEEEEEecCC
Q 004164 669 GSFLLTVKDALSEQGLFIVNLVSR--SQATKDMVISRMKMV-FNHLFCL--QLEED-VNLVLFGLSSE 730 (771)
Q Consensus 669 ~~fl~~~~~~L~~~Gilv~Nl~~~--~~~~~~~v~~~l~~v-F~~v~~~--~~~~~-~N~Vl~a~~~~ 730 (771)
.+|++.++++|+|||++++|..+. .......+.++++++ | .+..+ .++.. .....+|++..
T Consensus 395 ~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~ 461 (521)
T PRK03612 395 VEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA 461 (521)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence 999999999999999999997544 244556788999999 8 44332 22322 22366676653
No 16
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=5.6e-15 Score=156.43 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=100.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhh----cCCCCcEEEEeecC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNV----RDRSDMRWRVMDMT 126 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~----~~~~~i~~~~~D~~ 126 (771)
++..+.+++.. .++.+|||+|||+|.++..+++. + .++|+|+|+|+.|++.++++.. ....+++++++|+.
T Consensus 61 ~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~ 137 (261)
T PLN02233 61 WKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDAT 137 (261)
T ss_pred HHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccc
Confidence 34444455543 56889999999999999988876 4 3589999999999998876642 12357999999999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++|+++++||+|++..+++++.++ ..++++++|+|||||++++.++..+.
T Consensus 138 ~lp~~~~sfD~V~~~~~l~~~~d~-------~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 138 DLPFDDCYFDAITMGYGLRNVVDR-------LKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cCCCCCCCEeEEEEecccccCCCH-------HHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999999999999998764 48999999999999999999987543
No 17
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=5.2e-15 Score=151.59 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=105.1
Q ss_pred hhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHH
Q 004164 29 ENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML 108 (771)
Q Consensus 29 ~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~ 108 (771)
+||+++|+.. ..-|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|+|+|+.+++.+.
T Consensus 1 ~~Wd~ry~~~----~~~w~~~--~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 1 EFWHERWQEG----QIGFHQS--EVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred ChHHHHHhcC----CCCCccC--CCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 4899999765 2345422 1222333333321113568999999999999999999999 9999999999999764
Q ss_pred HHhhc-------------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEE
Q 004164 109 RRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 109 ~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
+++.. ...++++.++|+.+++.. .+.||.|++.+++++++... +..+++.+.++|||||++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~-----R~~~~~~l~~lLkpgG~~ 148 (213)
T TIGR03840 74 AENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEM-----RQRYAAHLLALLPPGARQ 148 (213)
T ss_pred HHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHH-----HHHHHHHHHHHcCCCCeE
Confidence 43311 234789999999988643 46799999999999886443 789999999999999998
Q ss_pred EEEEcC
Q 004164 175 VCLTLA 180 (771)
Q Consensus 175 ii~~~~ 180 (771)
+++++.
T Consensus 149 ll~~~~ 154 (213)
T TIGR03840 149 LLITLD 154 (213)
T ss_pred EEEEEE
Confidence 887764
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=2.1e-15 Score=133.01 Aligned_cols=95 Identities=29% Similarity=0.513 Sum_probs=81.2
Q ss_pred EEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCccc
Q 004164 73 LVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPEL 152 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~ 152 (771)
||+|||+|..+..|++.+..+|+++|+|+.+++.++++... ..+.+.++|++++|+++++||+|++.++++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccC---
Confidence 89999999999999999555999999999999988777633 4566999999999999999999999999999832
Q ss_pred chHHHHHHHHHHHHccccCeEEEE
Q 004164 153 GHKLGNQYLSEVKRLLKSGGKFVC 176 (771)
Q Consensus 153 ~~~~~~~~l~~i~rvLkpGG~~ii 176 (771)
..++++++.|+|||||++++
T Consensus 76 ----~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 ----PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHEEEEEEEEE
T ss_pred ----HHHHHHHHHHHcCcCeEEeC
Confidence 56999999999999999986
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.5e-14 Score=146.10 Aligned_cols=134 Identities=22% Similarity=0.339 Sum_probs=109.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC------CeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEe
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF------HGITNVDFSKVVISDMLRRNVRDR----SDMRWRVM 123 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~------~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~ 123 (771)
..+...+.. .++.++||++||||.++..+.+. +. .+|+.+|||+.|++.++++..+.. ..+.|+++
T Consensus 90 d~~v~~L~p---~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~ 166 (296)
T KOG1540|consen 90 DMFVSKLGP---GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG 166 (296)
T ss_pred HHhhhccCC---CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC
Confidence 345555543 67899999999999999888876 22 689999999999999988875433 34899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
|++++||++.+||.....+.+.+..+.+ +++++.+|+|||||+|.|.++++ ...+.+..+-..|...+
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~-------k~l~EAYRVLKpGGrf~cLeFsk--v~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQ-------KALREAYRVLKPGGRFSCLEFSK--VENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHH-------HHHHHHHHhcCCCcEEEEEEccc--cccHHHHHHHHhhhhhh
Confidence 9999999999999999999999988754 99999999999999999999983 33344555555555554
No 20
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.58 E-value=1.2e-14 Score=149.37 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=106.1
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
+.+||+++|.... ..|... .....+.+++......++.+|||+|||.|..+..|++.|+ +|+|+|+|+.+|+.
T Consensus 2 ~~~~Wd~rw~~~~----~~~~~~--~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 2 DPDFWHEKWAENQ----IGFHQE--EVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred CHhHHHHHHcCCC----CCCCCC--CCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 3679999997652 234322 2334455555322224568999999999999999999999 89999999999997
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe
Q 004164 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+.++... ...++++.++|+.+++.. ...||+|++..++++++... +..++..+.++|+|||
T Consensus 75 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~-----R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 75 FFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEM-----RERYVQQLAALLPAGC 149 (218)
T ss_pred HHHHcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHH-----HHHHHHHHHHHcCCCC
Confidence 6543211 135789999999988533 36899999999999986443 7899999999999998
Q ss_pred EEEEEEc
Q 004164 173 KFVCLTL 179 (771)
Q Consensus 173 ~~ii~~~ 179 (771)
+++++++
T Consensus 150 ~~~l~~~ 156 (218)
T PRK13255 150 RGLLVTL 156 (218)
T ss_pred eEEEEEE
Confidence 7666544
No 21
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.58 E-value=5.4e-14 Score=144.22 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=112.4
Q ss_pred CCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHH
Q 004164 26 TSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (771)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~ 105 (771)
.+.+||+++|+... ..|... .....|.+++......++.+||++|||.|....+|++.|+ +|+|+|+|+.+|+
T Consensus 7 ~~~~fW~~rw~~~~----~~f~~~--~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~ 79 (226)
T PRK13256 7 NNNQYWLDRWQNDD----VGFCQE--SPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVL 79 (226)
T ss_pred CCHHHHHHHHhcCC----CCCccC--CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHH
Confidence 46789999999762 345443 2334455555443334568999999999999999999999 8999999999999
Q ss_pred HHHHHhh-------------cCCCCcEEEEeecCCCCCC---CCCccEEEeccccccccCcccchHHHHHHHHHHHHccc
Q 004164 106 DMLRRNV-------------RDRSDMRWRVMDMTSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (771)
Q Consensus 106 ~~~~~~~-------------~~~~~i~~~~~D~~~l~~~---~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLk 169 (771)
.+.+++. ..+.++++.++|+.+++.. .+.||+|++.++|.+++... +.++.+.+.++|+
T Consensus 80 ~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~-----R~~Y~~~l~~lL~ 154 (226)
T PRK13256 80 SFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDL-----RTNYAKMMLEVCS 154 (226)
T ss_pred HHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHH-----HHHHHHHHHHHhC
Confidence 8766431 1235799999999998632 26899999999999996543 8899999999999
Q ss_pred cCeEEEEEEcC
Q 004164 170 SGGKFVCLTLA 180 (771)
Q Consensus 170 pGG~~ii~~~~ 180 (771)
|||.++++++.
T Consensus 155 pgg~llll~~~ 165 (226)
T PRK13256 155 NNTQILLLVME 165 (226)
T ss_pred CCcEEEEEEEe
Confidence 99999998874
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=2.9e-14 Score=156.60 Aligned_cols=107 Identities=19% Similarity=0.322 Sum_probs=93.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..|++....+|+|+|+|+.+++.++++....+ ++++|+++|+.++++++++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4678999999999999999998733399999999999998877665443 47999999999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.+. ..++++++++|||||+|++.++.
T Consensus 197 ~h~~d~-------~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHMPDK-------RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hccCCH-------HHHHHHHHHHcCCCcEEEEEEec
Confidence 998763 48999999999999999998865
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=3.7e-14 Score=143.96 Aligned_cols=114 Identities=24% Similarity=0.354 Sum_probs=93.7
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~s 134 (771)
.+.+.+.. .++.+|||+|||+|..+..|++.|. +|+++|+|+.+++.+++.....+ .++++.+.|+.+++++ ++
T Consensus 21 ~l~~~l~~---~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~ 95 (197)
T PRK11207 21 EVLEAVKV---VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GE 95 (197)
T ss_pred HHHHhccc---CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CC
Confidence 34555543 4568999999999999999999987 99999999999998877665444 4589999999888775 67
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
||+|++..+++++...+ ...+++++.++|+|||++++++.
T Consensus 96 fD~I~~~~~~~~~~~~~-----~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 96 YDFILSTVVLMFLEAKT-----IPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred cCEEEEecchhhCCHHH-----HHHHHHHHHHHcCCCcEEEEEEE
Confidence 99999999998875433 67999999999999999766553
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.54 E-value=4.9e-14 Score=129.00 Aligned_cols=106 Identities=28% Similarity=0.388 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeec-CCCCCCCCCccEEEecc-
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDM-TSMQFMDETFDVILDKG- 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~--~~~~~i~~~~~D~-~~l~~~~~sFDlVi~~~- 142 (771)
|+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ...+++++++.|+ ..... .+.||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 5789999999999999999993 44489999999999999988873 3447999999999 33333 35699999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+++++...+ ....+++.+.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~----~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLD----ERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence 666554321 26789999999999999999875
No 25
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.52 E-value=1.5e-13 Score=137.20 Aligned_cols=131 Identities=24% Similarity=0.385 Sum_probs=99.7
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
..+||.+.|... ...+. +.+.++. .++.++||+|||.|+.+.+|++.|+ +|+++|+|+.+++.
T Consensus 5 ~~~y~~kky~~~---------~~hs~----v~~a~~~---~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 5 PEDYFHKKYGLT---------PTHSE----VLEAVPL---LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp STTHHHHHHTB-------------HH----HHHHCTT---S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred HHHHHHHhhCCC---------CCcHH----HHHHHhh---cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 356777766543 12222 3444443 3568999999999999999999999 99999999999999
Q ss_pred HHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 107 MLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 107 ~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+.+....-.++..+.|+.+..++ +.||+|++..+++++.... +.++++.+...++|||++++.++.
T Consensus 68 l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~-----~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 68 LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQREL-----RPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGG-----HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCCHHH-----HHHHHHHHHhhcCCcEEEEEEEec
Confidence 8877767777799999999998875 6899999988898887554 789999999999999999887653
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.51 E-value=1.9e-13 Score=141.92 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=102.7
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM 123 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~ 123 (771)
+......+..+...+.. .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.++++..... ++++++++
T Consensus 27 ~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~ 103 (231)
T TIGR02752 27 FQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG 103 (231)
T ss_pred CCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 33444445556666654 56789999999999999999876 3 3589999999999998877764333 57899999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
|+.++++++++||+|++..+++++.+. .++++++.++|+|||++++.+...+.
T Consensus 104 d~~~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 104 NAMELPFDDNSFDYVTIGFGLRNVPDY-------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred chhcCCCCCCCccEEEEecccccCCCH-------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 999988888999999999999887653 48999999999999999998876543
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.50 E-value=1.1e-13 Score=134.43 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-cC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYD-AG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~-~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~ 141 (771)
+.+.+|||+|||+|.++..|++ .+ ..+++|+|+|+.+++.+++++...+ ++++|.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 3578999999999999999994 32 3589999999999999988765444 57999999999987 55 899999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++++.+. ..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~~-------~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDP-------EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHH-------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCH-------HHHHHHHHHHcCCCcEEEEEECC
Confidence 999888754 38999999999999999999876
No 28
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.50 E-value=1.4e-13 Score=141.38 Aligned_cols=141 Identities=26% Similarity=0.379 Sum_probs=105.2
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISD 106 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~ 106 (771)
+.+||+++|+... ..+......+.+...+.. +.. .++.+||.+|||.|.....|++.|+ +|+|+|+|+.+|+.
T Consensus 2 ~~~~W~~~w~~~~--~~w~~~~~~p~L~~~~~~-l~~---~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 2 DPEFWEERWQEGQ--TPWDQGEPNPALVEYLDS-LAL---KPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHHHHHHHHHTT----TT--TTSTHHHHHHHHH-HTT---STSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred CHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHh-cCC---CCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 3689999999762 333333344555555555 222 5678999999999999999999999 99999999999998
Q ss_pred HHHHhhc-------------CCCCcEEEEeecCCCCCCC-CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe
Q 004164 107 MLRRNVR-------------DRSDMRWRVMDMTSMQFMD-ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 107 ~~~~~~~-------------~~~~i~~~~~D~~~l~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+.+++.. ...++++.++|+.+++... ++||+|++.++|.+++... +.++.+.+.++|+|||
T Consensus 75 ~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~-----R~~Ya~~l~~ll~p~g 149 (218)
T PF05724_consen 75 AFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEM-----RERYAQQLASLLKPGG 149 (218)
T ss_dssp HHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGG-----HHHHHHHHHHCEEEEE
T ss_pred HHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHH-----HHHHHHHHHHHhCCCC
Confidence 8555421 1136789999999986433 5899999999999997554 8899999999999999
Q ss_pred EEEEEEc
Q 004164 173 KFVCLTL 179 (771)
Q Consensus 173 ~~ii~~~ 179 (771)
.++++++
T Consensus 150 ~~lLi~l 156 (218)
T PF05724_consen 150 RGLLITL 156 (218)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9554443
No 29
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=144.34 Aligned_cols=155 Identities=20% Similarity=0.246 Sum_probs=118.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-------CCCCCCCeeEEEcchHHHHHhhccCCc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-------GFTQDKSLKVHITDGIKFVREMKSSSA 612 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-------g~~~~~r~~v~i~Dg~~~l~~~~~~~~ 612 (771)
....+||+||+|.|...+-|.+.....+|+-||+||.|+++|++.- |--.|+|++|+++||.+|++..+
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---- 363 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---- 363 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc----
Confidence 4568999999999999888888744679999999999999998543 22368999999999999999865
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 613 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..||+||+|+-+++..+ ...+++.||+..++++|+++|++|+.--+.
T Consensus 364 ----------------------------~~fD~vIVDl~DP~tps-----~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 364 ----------------------------DMFDVVIVDLPDPSTPS-----IGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred ----------------------------ccccEEEEeCCCCCCcc-----hhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 58999999995554221 467899999999999999999999987543
Q ss_pred --ChhHHHHHHHHHHHhccceEEee--ecC-CccEEEEEecCCC
Q 004164 693 --SQATKDMVISRMKMVFNHLFCLQ--LEE-DVNLVLFGLSSES 731 (771)
Q Consensus 693 --~~~~~~~v~~~l~~vF~~v~~~~--~~~-~~N~Vl~a~~~~~ 731 (771)
.+...-.+.++++++=-.++-+. ++. +..-.++|.+.+.
T Consensus 411 y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~~~~ 454 (508)
T COG4262 411 YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAPGDA 454 (508)
T ss_pred ccCCceeeeehhHHHhCcceeeeeEEecCcccccceeecccccC
Confidence 34444567788887644333332 233 2344677776664
No 30
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=3.4e-14 Score=143.89 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=98.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||-|.++..||+.|. +|+|+|+++.+|+.++.++.+.+-.+.|.+..++++....++||+|++..++.|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 789999999999999999999996 9999999999999999888777777889999999887666899999999999999
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++++ .++..+.+++||||.+++++..+
T Consensus 138 ~dp~-------~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 138 PDPE-------SFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred CCHH-------HHHHHHHHHcCCCcEEEEecccc
Confidence 9876 89999999999999999999874
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.50 E-value=1.7e-13 Score=138.80 Aligned_cols=114 Identities=19% Similarity=0.288 Sum_probs=92.8
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+.+.+.. .++.+|||+|||+|.++..|++.|. +|+++|+|+.+++.++++....+-++.+.+.|+...+++ ++|
T Consensus 21 ~l~~~~~~---~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 21 AVREAVKT---VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHHhcc---CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 34555543 3567999999999999999999887 999999999999988776655554578888888776654 689
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+|++..+++++.... ...++++++++|+|||++++++.
T Consensus 96 D~I~~~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGR-----VPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CEEEEecccccCCHHH-----HHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999998875433 67999999999999999777654
No 32
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=2.4e-13 Score=143.19 Aligned_cols=114 Identities=20% Similarity=0.351 Sum_probs=95.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~s 134 (771)
..+.+.+.. .+..+|||+|||+|.++..++..+. +++++|+|+.+++.++++. ....++++|+.++++++++
T Consensus 32 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~----~~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 32 DALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKD----AADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhC----CCCCEEEcCcccCcCCCCc
Confidence 344444442 4568999999999999999988775 9999999999998776553 2457899999999999999
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
||+|++..+++++.+. ..++.++.++|+|||.+++.++....
T Consensus 104 fD~V~s~~~l~~~~d~-------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 104 FDLAWSNLAVQWCGNL-------STALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred EEEEEECchhhhcCCH-------HHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 9999999999987664 48999999999999999999987554
No 33
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=2.3e-13 Score=144.26 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||||||+|..+..++.....+|+++|+|+.+++.+++++.. ..++.+.++|+.+.++++++||+|++..+++|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h 129 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILH 129 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHh
Confidence 67899999999999999988775223899999999999988777643 46799999999999999999999999888888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+...+ ...++++++++|||||++++.++..
T Consensus 130 ~~~~d-----~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 130 LSYAD-----KKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCHHH-----HHHHHHHHHHHcCCCcEEEEEEecc
Confidence 65323 5699999999999999999998764
No 34
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=1.2e-13 Score=149.65 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||||||+|.++..|++.|. +|+|+|+|+.+++.++++..... .++.++++|++++++++++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3567999999999999999998776 89999999999998876653322 47999999999998888899999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+.++. .+++++.++|||||.+++.+...
T Consensus 209 eHv~d~~-------~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 EHVANPA-------EFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred HhcCCHH-------HHHHHHHHHcCCCcEEEEEECCc
Confidence 9998755 89999999999999999998764
No 35
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.47 E-value=2.6e-13 Score=134.01 Aligned_cols=141 Identities=20% Similarity=0.280 Sum_probs=102.1
Q ss_pred CCHhhHHHHHhhcCCCCccc----cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH
Q 004164 26 TSKENWDKFFTIRGIGDSFE----WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (771)
Q Consensus 26 ~~~~yWd~~y~~~~~~~~~e----w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~ 101 (771)
.+.++|++.++.. +++. ||... .....+...+.. ..-.++||+|||+|.++..|+... .+++++|+|+
T Consensus 4 ~~~~~l~~~la~~---DPW~~~~~~YE~~-K~~~~l~aaLp~---~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~ 75 (201)
T PF05401_consen 4 DNYQLLNRELAND---DPWGFETSWYERR-KYRATLLAALPR---RRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISP 75 (201)
T ss_dssp SHHHHHHHHHTSS---SGGGTTT-HHHHH-HHHHHHHHHHTT---SSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-H
T ss_pred cHHHHHHHHhCCC---CCCCCCCCHHHHH-HHHHHHHHhcCc---cccceeEecCCCccHHHHHHHHhh-CceEEEeCCH
Confidence 3567888888765 4433 44331 111123334544 456799999999999999999985 4899999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 102 VVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 102 ~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+|+.++++.. ..++++|.++|+.+. .++++||+|++..++|++.+.+ .+..++..+...|+|||.+++.+..
T Consensus 76 ~Al~~Ar~Rl~-~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~----~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 76 RALARARERLA-GLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAE----DLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHHHTT-T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHH----HHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHhcC-CCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHH----HHHHHHHHHHHHhCCCCEEEEEEec
Confidence 99999998885 447999999999885 4679999999999999997633 2788999999999999999998865
No 36
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=4.5e-13 Score=142.84 Aligned_cols=148 Identities=22% Similarity=0.321 Sum_probs=108.7
Q ss_pred hhhhhhccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC----C
Q 004164 16 TDLLQTLGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG----F 91 (771)
Q Consensus 16 ~~lP~~~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g----~ 91 (771)
..+|..........+|.+.+..+ ..|-+.+.|..+...+...+......+..+|||+|||+|.++..+++.. .
T Consensus 36 ~ll~~~~~~~~~~~d~~~~~~ar---~~fl~~g~y~~l~~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~ 112 (272)
T PRK11088 36 NLLPVQHKRSKDPGDNKEMMQAR---RAFLDAGHYQPLRDAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITT 112 (272)
T ss_pred EeccccccCCCCCCcCHHHHHHH---HHHHHCCChHHHHHHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccC
Confidence 33554444445556777777655 3444455666676666555543212356789999999999999988752 2
Q ss_pred CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccC
Q 004164 92 HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 92 ~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpG 171 (771)
..++|+|+|+.+++.+.++ .+++.|.++|+.++|+++++||+|++..+ + ..+++++|+||||
T Consensus 113 ~~v~giD~s~~~l~~A~~~----~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~--------~~~~e~~rvLkpg 174 (272)
T PRK11088 113 MQLFGLDISKVAIKYAAKR----YPQVTFCVASSHRLPFADQSLDAIIRIYA------P--------CKAEELARVVKPG 174 (272)
T ss_pred CeEEEECCCHHHHHHHHHh----CCCCeEEEeecccCCCcCCceeEEEEecC------C--------CCHHHHHhhccCC
Confidence 3799999999999877554 36799999999999999999999997432 1 2368899999999
Q ss_pred eEEEEEEcCcchh
Q 004164 172 GKFVCLTLAESHV 184 (771)
Q Consensus 172 G~~ii~~~~~~~~ 184 (771)
|+|++++....+.
T Consensus 175 G~li~~~p~~~~l 187 (272)
T PRK11088 175 GIVITVTPGPRHL 187 (272)
T ss_pred CEEEEEeCCCcch
Confidence 9999998876664
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.45 E-value=1.3e-13 Score=124.44 Aligned_cols=96 Identities=30% Similarity=0.477 Sum_probs=81.1
Q ss_pred EEEEcCCcchhHHHHHhc---CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccc-ccc
Q 004164 72 ILVPGCGNSRLSEHLYDA---GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG-LDA 146 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~---g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~-l~~ 146 (771)
|||+|||+|..+..+++. +. .+++++|+|+.|++.++++....+.+++|++.|+.++++.+++||+|++.+. +++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999886 32 5999999999999999888876667999999999999988899999999554 888
Q ss_pred ccCcccchHHHHHHHHHHHHccccCe
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGG 172 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG 172 (771)
+...+ +..+++++.++|+|||
T Consensus 81 ~~~~~-----~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEE-----LEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHH-----HHHHHHHHHHTEEEEE
T ss_pred CCHHH-----HHHHHHHHHHHhCCCC
Confidence 66544 8899999999999998
No 38
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=6.3e-13 Score=140.40 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
++.+|||+|||+|.++..|++.+. +|+++|+|+.+++.++++....+ ++++++++|+.+++ +.+++||+|++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 567999999999999999999876 99999999999998887765443 57899999998874 567899999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+++.++. .++.++.++|||||++++..+...
T Consensus 123 ~~~~~~~-------~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 EWVADPK-------SVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HhhCCHH-------HHHHHHHHHcCCCeEEEEEEECcc
Confidence 9987654 899999999999999998876643
No 39
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=7e-13 Score=143.09 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHH--HhhcCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLR--RNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~--~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+.++.. +......++.+..+++.+++.. .+||+|++.+++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 5678999999999999999988887789999999999976432 2222335788899999988764 589999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+.++. .+|++++++|+|||.+++.++.
T Consensus 199 ~H~~dp~-------~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 199 YHRKSPL-------EHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hccCCHH-------HHHHHHHHhcCCCCEEEEEEEE
Confidence 9987654 8999999999999999998753
No 40
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=7.6e-13 Score=144.12 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=93.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHH--hhcCCCCcEEEEeecCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRR--NVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~--~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+...+.. .++.+|||||||+|.++..++..|...|+|+|+|+.++.++... ......++.++.+|+.++++ ++
T Consensus 113 ~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~ 188 (322)
T PRK15068 113 RVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LK 188 (322)
T ss_pred HHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cC
Confidence 34445542 46789999999999999999999877899999999998765432 22223579999999999988 78
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+||+|++.++++|+.++. .+++++++.|+|||.+++.++
T Consensus 189 ~FD~V~s~~vl~H~~dp~-------~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL-------DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEECChhhccCCHH-------HHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999987644 899999999999999998764
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=3e-13 Score=145.29 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|..+..|++.|+ +|+|+|+|+.+++.+++++...+.++++.+.|+...++ +++||+|++..+++++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 346999999999999999999887 99999999999998887776666688999999987665 5789999999999987
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.... +..+++++.++|+|||+++++.
T Consensus 198 ~~~~-----~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 NRER-----IPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CHHH-----HHHHHHHHHHhcCCCcEEEEEE
Confidence 5433 6799999999999999977654
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=1.6e-12 Score=149.64 Aligned_cols=108 Identities=22% Similarity=0.339 Sum_probs=94.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||||||+|..+..|++....+|+|+|+|+.+++.++++......+++|.++|+.+.++++++||+|++.++++|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 46789999999999999999886334899999999999988776644446799999999999888889999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+.++. .++++++++|||||++++.++..
T Consensus 345 ~~d~~-------~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 345 IQDKP-------ALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cCCHH-------HHHHHHHHHcCCCeEEEEEEecc
Confidence 97644 89999999999999999998753
No 43
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=2.1e-12 Score=135.76 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=89.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|..+..+++. +..+++++|+|+.|++.++++....+ .+++++++|+.+++++ .+|+|++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~ 132 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLN 132 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehh
Confidence 36789999999999999888762 33599999999999999988875433 3799999999988764 59999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.+++++...+ ...++++++++|||||.|++.+.
T Consensus 133 ~~l~~l~~~~-----~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSE-----RQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHH-----HHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999986543 56899999999999999999874
No 44
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.40 E-value=1.7e-12 Score=132.36 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|..+..|+.. +..+++|+|+|+.+++.++++. +++.+.++|+.+ ++++++||+|++.++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~----~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL----PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC----CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 35679999999999999999886 4459999999999999886543 467889999988 88899999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.... +.++++++.+++ ++++++.++-
T Consensus 117 hl~p~~-----~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 117 HINPDN-----LPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hCCHHH-----HHHHHHHHHhhc--CcEEEEEEee
Confidence 985332 779999999998 4677777654
No 45
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.40 E-value=9.9e-10 Score=131.61 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=83.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||.+|+|+|+++..+... +..+|++||+++..+++|++.+.+. ..++++++.+|..+|++...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~----------- 606 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR----------- 606 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC-----------
Confidence 478999999999999988876 3347999999999999999999432 22589999999999987642
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
.+||+||+|...-.....+.- ....=.-.+++..+.++|+|||++++-...
T Consensus 607 ---------------------~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 ---------------------EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred ---------------------CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 579999997532211100000 000001245778888999999999875433
No 46
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=1.4e-12 Score=137.70 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..|++.. ..+|+|+|+|+.|++.++++ +++++++|+.+++ ++++||+|++..+++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCCceEEEEehhhh
Confidence 577899999999999999998872 34899999999999877542 5889999998874 567999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++.+. ..++++++++|||||++++...
T Consensus 101 ~~~d~-------~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 101 WVPEH-------ADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCCCH-------HHHHHHHHHhCCCCcEEEEEcC
Confidence 98754 4899999999999999998754
No 47
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.38 E-value=1.9e-12 Score=125.79 Aligned_cols=110 Identities=31% Similarity=0.511 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~ 132 (771)
+.+.+..+... ..++.+|||+|||+|.++..|++.|+ +++++|+++.+++. ..+.....+....+.++
T Consensus 9 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 9 YADLLERLLPR--LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHHHHTC--TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH---------TTSEEEEEECHTHHCHS
T ss_pred HHHHHHHHhcc--cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh---------hhhhhhhhhhhhhhccc
Confidence 34445555531 14788999999999999999988888 99999999998875 34556666555656678
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
++||+|++..+++|+.++ ..+++++.++|||||++++.+...
T Consensus 77 ~~fD~i~~~~~l~~~~d~-------~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDP-------EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSEEEEEEESSGGGSSHH-------HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cchhhHhhHHHHhhcccH-------HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999999999853 499999999999999999999764
No 48
>PRK05785 hypothetical protein; Provisional
Probab=99.38 E-value=2.9e-12 Score=132.84 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.++++ ..++++|+.++|+++++||+|++..+++++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~-------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA-------DDKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc-------cceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 4689999999999999999887323899999999999977543 246789999999999999999999999988
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+. ++++++++|+|||. +++++++.
T Consensus 124 ~d~-------~~~l~e~~RvLkp~--~~ile~~~ 148 (226)
T PRK05785 124 DNI-------EKVIAEFTRVSRKQ--VGFIAMGK 148 (226)
T ss_pred CCH-------HHHHHHHHHHhcCc--eEEEEeCC
Confidence 764 48999999999994 33455543
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.38 E-value=8e-12 Score=125.44 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.++++....+ .+++++++|+.+++. +++||+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 4789999999999999998874 44599999999999998877665544 459999999999876 679999998642
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 199 (771)
.+ ...+++.+.++|+|||++++.... +....+.... ..+|.+.
T Consensus 122 --~~-------~~~~l~~~~~~LkpGG~lv~~~~~--~~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 --AS-------LSDLVELCLPLLKPGGRFLALKGR--DPEEEIAELPKALGGKVE 165 (187)
T ss_pred --cC-------HHHHHHHHHHhcCCCeEEEEEeCC--ChHHHHHHHHHhcCceEe
Confidence 21 458999999999999999998754 3323333222 2388765
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.37 E-value=2.9e-12 Score=134.38 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=122.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHH--HHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDML--RRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~--~~~~~~~~~i~~~~ 122 (771)
||...+. -..+...+.. -.+.+|||||||+|..+..|+..|.+.|+|+|.++....+.. +++......+.+..
T Consensus 97 EWrSd~K--W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp 171 (315)
T PF08003_consen 97 EWRSDWK--WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP 171 (315)
T ss_pred cccccch--HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC
Confidence 4654431 1234455533 478899999999999999999999989999999998887643 33322223344444
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc-chhhhhccCcEEEEe
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG-LLFPKFRFGWKMSVH 201 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~-~l~~~~~~~w~~~~~ 201 (771)
.-+++++. .+.||+|++.|+|||..++- ..|.+++..|++||.+++-++.-+.-.. .+...-+..=+-.+.
T Consensus 172 lgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl-------~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~ 243 (315)
T PF08003_consen 172 LGVEDLPN-LGAFDTVFSMGVLYHRRSPL-------DHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW 243 (315)
T ss_pred cchhhccc-cCCcCEEEEeeehhccCCHH-------HHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE
Confidence 67888887 68999999999999999887 8899999999999999998875332211 222222222222344
Q ss_pred ecCCCCC-----CCCCCccEEEEEEEcCCccccccccccc
Q 004164 202 AIPQKSS-----SEPSLQTFMVVADKENSSVVLQVTSSFD 236 (771)
Q Consensus 202 ~i~~~~~-----~~~~l~~f~~v~~k~~~~~~l~~~~~~~ 236 (771)
.+++... .+..|....++....+....+..++|+.
T Consensus 244 FiPs~~~L~~wl~r~gF~~v~~v~~~~Tt~~EQR~T~Wm~ 283 (315)
T PF08003_consen 244 FIPSVAALKNWLERAGFKDVRCVDVSPTTIEEQRKTDWMD 283 (315)
T ss_pred EeCCHHHHHHHHHHcCCceEEEecCccCCHHHhccCCCcC
Confidence 4443332 3455666777776666666677788854
No 51
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.37 E-value=3.3e-12 Score=138.97 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++.. ..+++++.+|+.++++++++||+|++.++++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 35789999999999999888775 44589999999999998876542 3578999999999999889999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++.+.+ .++++++++|+|||+++++...
T Consensus 190 ~~~d~~-------~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 190 YWPDPQ-------RGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred hCCCHH-------HHHHHHHHhcCCCcEEEEEEec
Confidence 887644 8899999999999999887643
No 52
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.36 E-value=1.4e-12 Score=134.36 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=116.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCCCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFTQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~~~ 590 (771)
+.| +-|++++++..+ .+++++||||.|.|...+-...|-..-.|+.+|||..|+++.++|| |+ ++
T Consensus 105 ~~Y-qemi~~l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~ 174 (337)
T KOG1562|consen 105 FAY-QEMIAHLALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EG 174 (337)
T ss_pred ccc-eeeeeccccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CC
Confidence 556 668888888776 7899999999999988665555532348999999999999999999 54 78
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
+++.+++|||..|++..+ .+.|||||+|. +|+.. |...++...
T Consensus 175 ~~v~l~iGDG~~fl~~~~-------------------------------~~~~dVii~ds--sdpvg----pa~~lf~~~ 217 (337)
T KOG1562|consen 175 KKVKLLIGDGFLFLEDLK-------------------------------ENPFDVIITDS--SDPVG----PACALFQKP 217 (337)
T ss_pred CceEEEeccHHHHHHHhc-------------------------------cCCceEEEEec--CCccc----hHHHHHHHH
Confidence 999999999999999975 26799999965 44433 788999999
Q ss_pred HHHHHHHccCCCcEEEEEeccCChhHH----HHHHHHHHHhccc
Q 004164 671 FLLTVKDALSEQGLFIVNLVSRSQATK----DMVISRMKMVFNH 710 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv~Nl~~~~~~~~----~~v~~~l~~vF~~ 710 (771)
|++.+++.|+++|+.+..- .+-+++ +...+.-+.+|+.
T Consensus 218 ~~~~v~~aLk~dgv~~~q~--ec~wl~~~~i~e~r~~~~~~f~~ 259 (337)
T KOG1562|consen 218 YFGLVLDALKGDGVVCTQG--ECMWLHLDYIKEGRSFCYVIFDL 259 (337)
T ss_pred HHHHHHHhhCCCcEEEEec--ceehHHHHHHHHHHHhHHHhcCc
Confidence 9999999999999998653 333333 4445566677874
No 53
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=5.4e-12 Score=130.97 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. +++.++.+|+.+.++++++||+|++..++++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 347999999999999999988853 579999999999987876653 4789999999999988899999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+.+. ..++.++.++|+|||.+++.++....+
T Consensus 111 ~~~~-------~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 111 CDDL-------SQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred ccCH-------HHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 8664 489999999999999999998765543
No 54
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=1.1e-11 Score=129.56 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc---CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA---GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~---g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..+++. +..+++++|+|+.|++.++++..... .+++++++|+.+++++ .+|+|++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~ 129 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILN 129 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeee
Confidence 36789999999999999999875 23589999999999998887764432 4689999999998765 58999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+++++...+ ...++++++++|+|||.+++.+..
T Consensus 130 ~~l~~~~~~~-----~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 130 FTLQFLPPED-----RIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred cchhhCCHHH-----HHHHHHHHHHhcCCCeEEEEeecc
Confidence 9999986433 568999999999999999998753
No 55
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=8.4e-12 Score=131.92 Aligned_cols=100 Identities=23% Similarity=0.355 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||||||+|.++..+++. +..+|+++|+|+.+++.++++. +++.++.+|+.++. ++++||+|++..+++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----PDCQFVEADIASWQ-PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC----CCCeEEECchhccC-CCCCccEEEEccChh
Confidence 56789999999999999999886 3459999999999998876553 56899999998765 456999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++.+. ..+++++.++|+|||++++..
T Consensus 105 ~~~d~-------~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WLPDH-------LELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEC
Confidence 98754 489999999999999998864
No 56
>PRK08317 hypothetical protein; Provisional
Probab=99.32 E-value=1.7e-11 Score=127.10 Aligned_cols=118 Identities=23% Similarity=0.376 Sum_probs=97.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
++..+...+.. .++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.....+++.+...|+.++++
T Consensus 7 ~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 7 YRARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 33445555543 578899999999999999998863 3689999999999998876633445689999999999888
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++++||+|++..+++++.+.. .+++++.++|+|||.+++.+..
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~-------~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA-------RALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHH-------HHHHHHHHHhcCCcEEEEEecC
Confidence 889999999999999987644 8999999999999999988753
No 57
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=1.4e-11 Score=130.88 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=90.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..++.+...+++.+|||||||-|.++..+++. |. +|+|+.+|+...+.++++....+ .++++...|..+++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence 4445555566689999999999999999999998 77 99999999999999988887666 468999999988753
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||.|++-+++.|+.... ...+++++.++|+|||++++...+
T Consensus 127 -~fD~IvSi~~~Ehvg~~~-----~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 -KFDRIVSIEMFEHVGRKN-----YPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp -S-SEEEEESEGGGTCGGG-----HHHHHHHHHHHSETTEEEEEEEEE
T ss_pred -CCCEEEEEechhhcChhH-----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 899999999999986544 779999999999999999976654
No 58
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=1.1e-11 Score=132.29 Aligned_cols=107 Identities=18% Similarity=0.306 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++.....+ .++++..+|+.++++++++||+|++..+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 57899999999999988777665 43 479999999999998877654433 5789999999999988889999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+++..+. ..+++++.++|||||+|++.++.
T Consensus 156 ~~~~~d~-------~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 156 INLSPDK-------ERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred ccCCCCH-------HHHHHHHHHHcCCCcEEEEEEee
Confidence 9887653 48999999999999999998764
No 59
>PRK06922 hypothetical protein; Provisional
Probab=99.32 E-value=1e-11 Score=142.71 Aligned_cols=112 Identities=19% Similarity=0.254 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.++++....+.++.++++|+.+++ +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 5789999999999999888875 3459999999999999988776544567888999999887 788999999999998
Q ss_pred ccccCc----c--cchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 DALMEP----E--LGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ~~l~~~----~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|++.+. . .......++++++.++|||||++++.+.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 875321 0 0112367999999999999999999874
No 60
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=8.1e-12 Score=122.61 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcE-EEEeecCCCC-CCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMR-WRVMDMTSMQ-FMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~-~~~~D~~~l~-~~~~sFDlVi~~~~ 143 (771)
.....+||+|||||..-..+-.....+||++|.++.|-+.+.+++++.. +++. |++++.++++ .+++++|+|++..+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 4556789999999999776654444599999999999998888876654 4666 9999999997 88999999999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|....++. +.|+++.|+|+|||++++++..
T Consensus 155 LCSve~~~-------k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 155 LCSVEDPV-------KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeccCCHH-------HHHHHHHHhcCCCcEEEEEecc
Confidence 99887654 9999999999999999999865
No 61
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=9.2e-12 Score=125.40 Aligned_cols=148 Identities=22% Similarity=0.293 Sum_probs=108.5
Q ss_pred CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---CeEEEEcCCHHH
Q 004164 27 SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVV 103 (771)
Q Consensus 27 ~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---~~V~~vDiS~~~ 103 (771)
.+.|||.+|.... ..| +.+..-+...+..++.... ++..+|||+|||.|.....+.+... -.|.++|+|+.+
T Consensus 35 ~~k~wD~fy~~~~--~rF--fkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~A 109 (264)
T KOG2361|consen 35 ASKYWDTFYKIHE--NRF--FKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRA 109 (264)
T ss_pred hhhhhhhhhhhcc--ccc--cchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHH
Confidence 5679999998762 333 3333334344444544311 2334899999999999988877521 379999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEeecCCC----CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 104 ISDMLRRNVRDRSDMRWRVMDMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 104 i~~~~~~~~~~~~~i~~~~~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+..++.....-.++...+.|++.. +.+.+++|+|.+..+|.++.... ...++++++++|||||.+++-+|
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek-----~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEK-----MQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHH-----HHHHHHHHHHHhCCCcEEEEeec
Confidence 9876554332334566667777653 46779999999999999987655 88999999999999999999999
Q ss_pred Ccchh
Q 004164 180 AESHV 184 (771)
Q Consensus 180 ~~~~~ 184 (771)
+...+
T Consensus 185 g~~Dl 189 (264)
T KOG2361|consen 185 GRYDL 189 (264)
T ss_pred ccchH
Confidence 86553
No 62
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=2.7e-11 Score=127.19 Aligned_cols=118 Identities=20% Similarity=0.335 Sum_probs=100.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~ 133 (771)
+...+.++...|+.+|||||||-|.++..+++. +. +|+|+++|+++.+.++++....+ .++++...|..+++ +
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e 136 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---E 136 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---c
Confidence 333444445589999999999999999999998 55 99999999999999998877666 36899999988874 4
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.||-|++-+++.|+.... ...+|+.++++|+|||++++.+...++
T Consensus 137 ~fDrIvSvgmfEhvg~~~-----~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PFDRIVSVGMFEHVGKEN-----YDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ccceeeehhhHHHhCccc-----HHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 599999999999997654 789999999999999999998887554
No 63
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.29 E-value=3.4e-11 Score=125.16 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCCCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.... ..++.+..+|+.+.+++.++||+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 467899999999999999998875 369999999999999887765432 3578999999999888788999999999
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+++++.+. ..++.++.++|+|||++++.+...
T Consensus 130 ~l~~~~~~-------~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 130 GLRNVPDI-------DKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccccCCCH-------HHHHHHHHHhccCCcEEEEEEecC
Confidence 99887653 488999999999999999987653
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=1.5e-11 Score=125.32 Aligned_cols=131 Identities=16% Similarity=0.128 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec-CCCC--CCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM-TSMQ--FMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~-~~l~--~~~~sFDlVi~~~ 142 (771)
++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.++++..... +++.++++|+ ..++ +++++||+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5789999999999999999876 34589999999999998887665443 6799999999 7665 7788999999865
Q ss_pred ccccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEE
Q 004164 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMS 199 (771)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~ 199 (771)
...+...... .......++++++++|+|||+|++.+.....+. .+...+ ..+|...
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE-YMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH-HHHHHHHhCccccc
Confidence 4433221110 000135889999999999999999876544433 333333 3466544
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.26 E-value=9.4e-11 Score=108.83 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=86.1
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-CCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS-MQF 130 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~-l~~ 130 (771)
...+...+.. .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.+++...... .++.++..|+.. ++.
T Consensus 8 ~~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 3344444432 45679999999999999999987 34689999999999998876654432 578888888765 333
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..++||+|++.+.... ...+++++.++|+|||+|++..+
T Consensus 85 ~~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 SLPEPDRVFIGGSGGL----------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred hcCCCCEEEECCcchh----------HHHHHHHHHHHcCCCCEEEEEec
Confidence 3468999998654332 45899999999999999998653
No 66
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.26 E-value=8.1e-11 Score=117.76 Aligned_cols=100 Identities=20% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++.....+ .+++++++|+.+++ .+++||+|++.. ++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 47899999999999999988664 3589999999999987765544433 46999999999874 357999999865 33
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+ ...+++.+.++|+|||++++..-
T Consensus 120 ~----------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 S----------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred C----------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 34788999999999999998753
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.26 E-value=1e-10 Score=116.85 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+.++++..+|+.+.. .++||+|+++..+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 567899999999999999999877 8999999999999887776555567888999987653 4589999998877655
Q ss_pred cCccc--------------chHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 148 MEPEL--------------GHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~--------------~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
.+... +......++.++.++|+|||+++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 43211 12236789999999999999999987653
No 68
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=2.3e-11 Score=128.99 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCcch----hHHHHHhcC------CCeEEEEcCCHHHHHHHHHHhhc------------------------
Q 004164 68 PPPQILVPGCGNSR----LSEHLYDAG------FHGITNVDFSKVVISDMLRRNVR------------------------ 113 (771)
Q Consensus 68 ~~~~ILDiGCG~G~----ls~~La~~g------~~~V~~vDiS~~~i~~~~~~~~~------------------------ 113 (771)
++.+|||+|||+|. ++..+++.+ ..+|+|+|+|+.||+.|++..-.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 445555531 13899999999999988764210
Q ss_pred ----CCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 114 ----DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 114 ----~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-..++.|.+.|+.+.+++.++||+|++..+++++..+. ..+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~-----~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT-----QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH-----HHHHHHHHHHHhCCCeEEEEEC
Confidence 01368999999999887788999999999999986544 6799999999999999999854
No 69
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.25 E-value=2.2e-11 Score=111.35 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=84.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..+||+||+|+|.++..+.+.+|..+|++||++|.+++.|++.+ .....++++++.+|+ .+....
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------------- 67 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------------- 67 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------------
Confidence 46899999999999999999889999999999999999999998 223468999999999 432222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+++...... + ...--...+|+.+++.|+|||+|+++.
T Consensus 68 -------------------~~~~D~v~~~~~~~~~---~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 -------------------LEPFDLVICSGFTLHF---L---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp -------------------SSCEEEEEECSGSGGG---C---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -------------------CCCCCEEEECCCcccc---c---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2569999995411100 0 000123578999999999999999974
No 70
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=1e-11 Score=126.62 Aligned_cols=101 Identities=24% Similarity=0.412 Sum_probs=86.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--------CcEEEEeecCCCCCCCCCccEEEe
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--------DMRWRVMDMTSMQFMDETFDVILD 140 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--------~i~~~~~D~~~l~~~~~sFDlVi~ 140 (771)
+.+|||+|||+|.+++.|++.|. +|+|||+++.+|+.|++.. ...| ++.+.+.|++.+. +.||.|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~-~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHK-KMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhh-hcCchhccccceeeehhhcchhhcc---cccceeee
Confidence 47899999999999999999997 9999999999999888773 3322 3567777777753 45999999
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
..+++|+.++. .++..+.++|||||++++.+...
T Consensus 165 sevleHV~dp~-------~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKDPQ-------EFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhCHH-------HHHHHHHHHhCCCCceEeeehhh
Confidence 99999998765 89999999999999999998764
No 71
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.25 E-value=2.9e-09 Score=122.80 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=93.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+-+|.||+|.|.....++...|+..+.+||+....+.-|-+...-..-.+++++.+|+..+.....
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~------------- 414 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP------------- 414 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC-------------
Confidence 3558999999999988899999999999999998877655444311112568888888765544443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
+..+|.|.+-- +||..--.-.-..+++++||+.+.+.|+|||.+- +.+.+..+.+..+
T Consensus 415 ------------------~~sv~~i~i~F--PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~~ 472 (506)
T PRK01544 415 ------------------NNSLDGIYILF--PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEAI 472 (506)
T ss_pred ------------------cccccEEEEEC--CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHH
Confidence 35689998843 4443211223456999999999999999999887 4566777766666
Q ss_pred HHHHH
Q 004164 702 SRMKM 706 (771)
Q Consensus 702 ~~l~~ 706 (771)
..+.+
T Consensus 473 ~~~~~ 477 (506)
T PRK01544 473 ELIQQ 477 (506)
T ss_pred HHHHh
Confidence 66554
No 72
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.24 E-value=2.9e-11 Score=122.93 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=90.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.++++||.||.|+|..+.++...+| +.+|++||+||...++|+++| |+ +++++++.+||.+++.++...
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~--~~~I~~~~gda~~~l~~l~~~----- 116 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL--DDRIEVIEGDALEVLPELAND----- 116 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG--GGGEEEEES-HHHHHHHHHHT-----
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC--CCcEEEEEeccHhhHHHHHhc-----
Confidence 3678999999999999999999887 479999999999999999998 55 579999999999999987621
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+...||+||+|++...+ .++|+.+.++|++||++++.
T Consensus 117 ----------------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 ----------------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp ----------------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEE
T ss_pred ----------------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEc
Confidence 112579999999976543 78999999999999999985
No 73
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.23 E-value=1.5e-12 Score=116.74 Aligned_cols=95 Identities=26% Similarity=0.343 Sum_probs=61.9
Q ss_pred EEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEecccccccc
Q 004164 73 LVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALM 148 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~ 148 (771)
||+|||+|.++..+.+. +..+++++|+|+.|++.++++..... ........+..+.. ...++||+|++..+++|+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999887 44599999999999987777765544 23444444444331 1225999999999999994
Q ss_pred CcccchHHHHHHHHHHHHccccCeEE
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
+ ...++++++++|+|||+|
T Consensus 81 ~-------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D-------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------HHHHHHHHTTT-TSS-EE
T ss_pred h-------HHHHHHHHHHHcCCCCCC
Confidence 3 569999999999999986
No 74
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.23 E-value=1.1e-10 Score=120.02 Aligned_cols=114 Identities=25% Similarity=0.403 Sum_probs=95.3
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+...+.. .++.+|||+|||+|..+..+++... .+++++|+++.+++.+.++.. ...++.+..+|+.+++++++
T Consensus 30 ~~~~~~~~---~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 30 RAVKLIGV---FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHhcc---CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCC
Confidence 34444443 4678999999999999999988754 489999999999998877654 44579999999999888788
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+||+|++..+++++.+ ...+++++.++|+|||++++.++.
T Consensus 106 ~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 106 SFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred cEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999998888765 348999999999999999998865
No 75
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.23 E-value=2.3e-11 Score=120.36 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=89.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|.|+|||+|..+..|+++ +...|+|+|-|+.||+.++++. ++++|..+|+.+.. ++..+|+++++.+|+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~-p~~~~dllfaNAvlq 103 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWK-PEQPTDLLFANAVLQ 103 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcC-CCCccchhhhhhhhh
Confidence 56789999999999999999998 5579999999999998886554 89999999999985 457899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++++-. .+|..+...|.|||.+.+.-.
T Consensus 104 WlpdH~-------~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 104 WLPDHP-------ELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hccccH-------HHHHHHHHhhCCCceEEEECC
Confidence 998755 899999999999999988653
No 76
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.23 E-value=4.6e-11 Score=123.51 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=87.2
Q ss_pred eEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
+|||||||+|.++..+++.. ..+++++|+|+.+++.++++....+ .++++...|+...+++ ++||+|++..+++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 79999999999999998873 3589999999999998887765433 5689999999777665 589999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.+ ...++++++++|+|||++++.++.
T Consensus 81 ~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 81 KD-------KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CC-------HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 65 349999999999999999998764
No 77
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=7.9e-11 Score=119.85 Aligned_cols=126 Identities=17% Similarity=0.315 Sum_probs=102.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEE-cchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHI-TDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i-~Dg~~~l~~~~~~~~~~ 614 (771)
..+++||.||.+.|.-+.++....| +.++++||+||+..+.|+++| |+ ++++.++. +|+++.+.+..
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--~~~i~~~~~gdal~~l~~~~------ 129 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--DDRIELLLGGDALDVLSRLL------ 129 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--cceEEEEecCcHHHHHHhcc------
Confidence 4678999999999999999999998 779999999999999999999 54 67899999 69999998732
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-EeccCC
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLVSRS 693 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~~~~ 693 (771)
...||+||+|++.+++ ++||+.+-++|+|||++|+ |+....
T Consensus 130 -------------------------~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 130 -------------------------DGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred -------------------------CCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCC
Confidence 3679999999988854 8999999999999999997 554331
Q ss_pred ----h--hHHHHHHHHHHHhccce
Q 004164 694 ----Q--ATKDMVISRMKMVFNHL 711 (771)
Q Consensus 694 ----~--~~~~~v~~~l~~vF~~v 711 (771)
+ .-.+..+..+++.+..+
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
T COG4122 172 RVADPSIRDARTQVRGVRDFNDYL 195 (219)
T ss_pred ccCCccchhHHHHHHHHHHHHHHH
Confidence 2 23445566666666543
No 78
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.22 E-value=8e-11 Score=131.18 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=88.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||||||+|.++..+++. |. +|+++|+|+.+++.++++.. +..+++...|..++ +++||+|++.++++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l---~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL---NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc---CCCCCEEEEeCchh
Confidence 67899999999999999999886 55 89999999999998877763 33578888888765 47899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++.... ...+++++.++|||||++++.++..+
T Consensus 240 hvg~~~-----~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 240 HVGPKN-----YRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hCChHH-----HHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 885433 56899999999999999999887643
No 79
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.5e-10 Score=118.34 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMT 126 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~ 126 (771)
+.+...+.+.+.. .++.+|||+|||+|..+..+++. + .++|+++|+++.+++.++++....+ .+++++.+|+.
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3444455555543 57889999999999999888875 2 3589999999999998877665444 35899999998
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.....++||+|++..++.++ ..++.+.|+|||++++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~-------------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI-------------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchh-------------hHHHHHhcCcCcEEEEEE
Confidence 764456799999998776654 356889999999998754
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.21 E-value=1.1e-10 Score=115.79 Aligned_cols=120 Identities=22% Similarity=0.310 Sum_probs=91.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCC-eEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFH-GITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMD 132 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~-~V~~vDiS~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~ 132 (771)
..|.+++.. .+..+|||+|||+|.++..++..+.. +|+++|+++.+++.+++........ ++++..|..+. .++
T Consensus 21 ~lL~~~l~~---~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPK---HKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPD 96 (170)
T ss_dssp HHHHHHHHH---HTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCT
T ss_pred HHHHHHHhh---ccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccc
Confidence 356666654 36789999999999999999998653 7999999999999887666555433 89999998764 347
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++||+|+++-.++.-. +.+....+.++.+..+.|+|||.++++...
T Consensus 97 ~~fD~Iv~NPP~~~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGG--DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCEEEEEE---SBTTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cceeEEEEccchhccc--ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 8999999998766533 223345889999999999999999776654
No 81
>PRK06202 hypothetical protein; Provisional
Probab=99.20 E-value=1.6e-10 Score=120.27 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=86.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA----GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~----g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++. ...++.+.+.+...+++++++||+|++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~--~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP--RRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc--ccCCCeEEEEecccccccCCCccEEEEC
Confidence 45689999999999999888752 32 48999999999999886654 2346888888888887778899999999
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.+++|+.+++ ...+++++.++++ |.+++.++..+
T Consensus 137 ~~lhh~~d~~-----~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHLDDAE-----VVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecCChHH-----HHHHHHHHHHhcC--eeEEEeccccC
Confidence 9999997654 5689999999998 66677776644
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.20 E-value=6.2e-10 Score=111.99 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=88.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
.+..+..+...+.. .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++.....+ .+++++.+|+..
T Consensus 16 ~~~~r~~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh
Confidence 34455556666654 467899999999999999998874 3589999999999998876554332 468899888743
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++ .++||+|++.+.... ...++..+.++|+|||++++....
T Consensus 93 -~~-~~~~D~v~~~~~~~~----------~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 93 -EL-PGKADAIFIGGSGGN----------LTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred -hc-CcCCCEEEECCCccC----------HHHHHHHHHHhcCCCeEEEEEEec
Confidence 33 368999998765433 347899999999999999886543
No 83
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.20 E-value=1.5e-10 Score=119.92 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=95.0
Q ss_pred HhhHHHHHhhcCCCCcc--ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHH
Q 004164 28 KENWDKFFTIRGIGDSF--EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVIS 105 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~--ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~ 105 (771)
.+.|+..|.... -..+ .+...+......+..++......++.+|||+|||+|.++..|++.+. .|+++|+|+.+++
T Consensus 22 ~~~w~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~ 99 (230)
T PRK07580 22 FDRWARIYSDAP-VSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVE 99 (230)
T ss_pred cchHHHhhCcCc-hhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 457888776531 1111 01122233344455555421124678999999999999999998876 7999999999999
Q ss_pred HHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeE
Q 004164 106 DMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 106 ~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~ 173 (771)
.++++....+ .++.+..+|+. ..+++||+|++..+++++..+. ...+++++.+.+++++.
T Consensus 100 ~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~l~~~~~~~-----~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 100 EARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDVLIHYPQED-----AARMLAHLASLTRGSLI 161 (230)
T ss_pred HHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcchhhcCCHHH-----HHHHHHHHHhhcCCeEE
Confidence 9987765444 37899998843 3468899999999998876544 66888888887754443
No 84
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.18 E-value=1.6e-10 Score=119.14 Aligned_cols=137 Identities=19% Similarity=0.276 Sum_probs=100.4
Q ss_pred HhhHHHHHhhcCCCCccccc-----cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHH
Q 004164 28 KENWDKFFTIRGIGDSFEWY-----AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKV 102 (771)
Q Consensus 28 ~~yWd~~y~~~~~~~~~ew~-----~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~ 102 (771)
...|+..|... ....|. .....+...+.+++.. ...++.+|||+|||+|.++..++..+. +|+|+|+|+.
T Consensus 14 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~ 88 (219)
T TIGR02021 14 FQRWARIYGSG---DPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQ 88 (219)
T ss_pred HHHHHHhhCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHH
Confidence 45787777643 112221 1122344456666652 114678999999999999999998766 8999999999
Q ss_pred HHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 103 VISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 103 ~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+++.++++..... .++.|.++|+.+++ ++||+|++..+++++.... ...++.++.+++++++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~-----~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASD-----MAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHHHhCCHHH-----HHHHHHHHHHHhCCCEEEEEC
Confidence 9999888775444 37899999998875 7899999999988875433 668899999999877665543
No 85
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=2.9e-10 Score=116.78 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=89.5
Q ss_pred chhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 004164 49 EWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (771)
Q Consensus 49 ~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (771)
..+.+...+.+.+.. .++.+|||+|||+|.++..+++. +. ++|+++|+++.+++.++++....+ .+++++++|+
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~ 136 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG 136 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc
Confidence 345555566666654 68899999999999999988876 32 589999999999998887765544 5799999999
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.....+.+.||+|++.+.+.. +...+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPD-------------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCccc-------------chHHHHHhhCCCcEEEEEE
Confidence 876656789999998765543 2356778999999988854
No 86
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.17 E-value=2.9e-10 Score=116.50 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
+++.+|||+|||+|.++..+++.. .+.|+++|+++ +. ..++++++++|+.+.+ +.+++||
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 467899999999999999998873 25899999998 21 2357999999999853 6678999
Q ss_pred EEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCCCCCCCC
Q 004164 137 VILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQKSSSEPS 212 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~~~~~~~ 212 (771)
+|++..+.++...+..+ ......+++++.++|+|||.|++..+....+.+ ++......|.. +..+...+....+
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~-~l~~l~~~f~~-v~~~Kp~ssr~~s 197 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDE-YLREIRSLFTK-VKVRKPDSSRARS 197 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHH-HHHHHHhCceE-EEEECCccccccC
Confidence 99998776664432111 011367999999999999999998776544332 33444443433 2223334444445
Q ss_pred CccEEE
Q 004164 213 LQTFMV 218 (771)
Q Consensus 213 l~~f~~ 218 (771)
.+.|++
T Consensus 198 ~e~~~~ 203 (209)
T PRK11188 198 REVYIV 203 (209)
T ss_pred ceeEEE
Confidence 555554
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.17 E-value=2e-10 Score=124.26 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=84.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC------CCCcEEEEeec
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------RSDMRWRVMDM 125 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~------~~~i~~~~~D~ 125 (771)
.....+.+++......++.+|||+|||+|.++..|++.|. +|+++|+|+.|++.++++.... ..++.|.+.|+
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 4445556666431112568999999999999999999886 8999999999999988876543 24578889988
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
.++ +++||+|++..+++|+++.. ...++..+.+ +.+||.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~-----~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDK-----ADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHH-----HHHHHHHHHh-hcCCEEEE
Confidence 664 47899999999998876543 4466666665 45555544
No 88
>PLN03075 nicotianamine synthase; Provisional
Probab=99.16 E-value=2.8e-10 Score=120.87 Aligned_cols=131 Identities=14% Similarity=0.203 Sum_probs=96.3
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHh--c-CCCeEEEEcCCHHHHHHHHHHhhc-C--CC
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYD--A-GFHGITNVDFSKVVISDMLRRNVR-D--RS 116 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~--~-g~~~V~~vDiS~~~i~~~~~~~~~-~--~~ 116 (771)
.|-+|..|..+.+.-...+......++.+|+|||||.|.++..+.. . ..++++++|+++.+++.+++.+.. . ..
T Consensus 98 ~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~ 177 (296)
T PLN03075 98 LFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSK 177 (296)
T ss_pred cCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccC
Confidence 3556777776665444444332123678999999998866544333 2 335899999999999988777633 2 35
Q ss_pred CcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 117 DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 117 ~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++|..+|+.+..-..+.||+|++. +++++...+ ..++++++++.|+|||.+++-..
T Consensus 178 rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~-----k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 178 RMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEE-----KVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CcEEEECchhhcccccCCcCEEEEe-ccccccccc-----HHHHHHHHHHhcCCCcEEEEecc
Confidence 7999999998864335789999999 777664333 56999999999999999999873
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.16 E-value=3.2e-10 Score=116.74 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=87.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
+.....+.+++.. .++.+|||+|||+|.++..|++... ++|+++|+++.+++.+++++...+ .+++++++|+.+
T Consensus 63 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~ 139 (215)
T TIGR00080 63 PHMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc
Confidence 3344556666654 6789999999999999999988732 469999999999998887765544 579999999987
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.....++||+|+......+ +...+.+.|+|||++++..
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK-------------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc-------------ccHHHHHhcCcCcEEEEEE
Confidence 6444578999997665433 3456788999999998854
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=99.16 E-value=4.6e-10 Score=116.22 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++.....+.++.++.+|+.+. +++++||+|+++.....
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 46789999999999999999988766999999999999988766554445688899998763 45679999998753322
Q ss_pred ccC--------------cccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 147 LME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 147 l~~--------------~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
... ...+....+.++.++.++||+||+++++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0111223677899999999999999986543
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=9.4e-10 Score=111.77 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTS 127 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~ 127 (771)
.++......+.. .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.++++....+ .++.++.+|+.+
T Consensus 27 ~~r~~~l~~l~~---~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 27 EIRALALSKLRL---RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHHcCC---CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 444444444443 67899999999999999988765 3 3589999999999998877665443 578999999876
Q ss_pred C-CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 M-QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l-~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. +...+.||+|++.+... . ...+++.+.++|+|||++++....
T Consensus 104 ~l~~~~~~~D~V~~~~~~~-----~-----~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 104 ILFTINEKFDRIFIGGGSE-----K-----LKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hHhhcCCCCCEEEECCCcc-----c-----HHHHHHHHHHHcCCCcEEEEEeec
Confidence 4 32346899999854221 1 458899999999999999875443
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=3.2e-10 Score=122.71 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=101.3
Q ss_pred chhhhhhccCCC--CHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCC--CCCCCCeEEEEcCCcchhHHHHHhcC
Q 004164 15 ATDLLQTLGDFT--SKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAP--TSSPPPQILVPGCGNSRLSEHLYDAG 90 (771)
Q Consensus 15 ~~~lP~~~~~f~--~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~--~~~~~~~ILDiGCG~G~ls~~La~~g 90 (771)
++.||..+- |+ ..+-|++.+... ++|....+ ...+..+.... ...++.+|||+|||+|..+..|++..
T Consensus 14 ~k~lp~~~~-yd~~G~~lf~~i~~~p------eYy~tr~E-~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 14 PKTLPPKYF-YDARGSELFEQICELP------EYYPTRTE-AAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred CCCCCchhc-ccchHHHHHHHHHCCC------ccccHHHH-HHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhh
Confidence 356766663 33 245677765432 34543322 22222222210 01356799999999999999998873
Q ss_pred --CCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC-CCCCCC----CccEEEeccccccccCcccchHHHHHHH
Q 004164 91 --FHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS-MQFMDE----TFDVILDKGGLDALMEPELGHKLGNQYL 161 (771)
Q Consensus 91 --~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~-l~~~~~----sFDlVi~~~~l~~l~~~~~~~~~~~~~l 161 (771)
..+|+++|+|+.|++.++++.....+. +.++++|+.+ +++... ...+++...+++++...+ ...+|
T Consensus 86 ~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e-----~~~~L 160 (301)
T TIGR03438 86 RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEE-----AVAFL 160 (301)
T ss_pred ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHH-----HHHHH
Confidence 248999999999999998887655544 6678999987 344332 233555556777775444 67999
Q ss_pred HHHHHccccCeEEEEEEc
Q 004164 162 SEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 162 ~~i~rvLkpGG~~ii~~~ 179 (771)
++++++|+|||.|++...
T Consensus 161 ~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 161 RRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred HHHHHhcCCCCEEEEecc
Confidence 999999999999987553
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.14 E-value=5.4e-10 Score=114.68 Aligned_cols=138 Identities=18% Similarity=0.098 Sum_probs=96.6
Q ss_pred CCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHH
Q 004164 25 FTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVI 104 (771)
Q Consensus 25 f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i 104 (771)
|-...||+..|......-...-+-..+.+...+..++.. .++.+|||+|||+|..+..|+.... +++++|+++.++
T Consensus 38 f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~ 113 (212)
T PRK00312 38 FVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQ 113 (212)
T ss_pred cCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHH
Confidence 444456666666542111111112234555566666654 6789999999999999998887753 899999999999
Q ss_pred HHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 105 SDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 105 ~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+++++...+ .++++..+|+.+...+.++||+|++...+.+ +...+.+.|+|||++++...
T Consensus 114 ~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~-------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 114 WEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE-------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred HHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh-------------hhHHHHHhcCCCcEEEEEEc
Confidence 98877765443 4689999998664333478999998765543 34567899999999988754
No 94
>PRK04266 fibrillarin; Provisional
Probab=99.13 E-value=5.9e-10 Score=115.34 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=88.1
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|......+...+..-+......++.+|||+|||+|.++..+++. +.+.|+++|+++.|++.+.+++.. ..++.++.+
T Consensus 49 ~~~~~r~~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-~~nv~~i~~ 127 (226)
T PRK04266 49 EWNPRRSKLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-RKNIIPILA 127 (226)
T ss_pred EECCCccchHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-cCCcEEEEC
Confidence 355554555555554222233468899999999999999999886 345899999999999977666533 378999999
Q ss_pred ecCCC----CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 124 DMTSM----QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 124 D~~~l----~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+.+. ++. ++||+|+... ..+. ....++.+++++|||||++++.
T Consensus 128 D~~~~~~~~~l~-~~~D~i~~d~-----~~p~----~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 128 DARKPERYAHVV-EKVDVIYQDV-----AQPN----QAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCCcchhhhcc-ccCCEEEECC-----CChh----HHHHHHHHHHHhcCCCcEEEEE
Confidence 98752 223 5699999532 2221 1346789999999999999993
No 95
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.11 E-value=7.3e-10 Score=122.41 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=92.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSM 128 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l 128 (771)
...+.+.+.. ....+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++...... .++++...|+.+.
T Consensus 217 trllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 4567777754 345799999999999999998874 4599999999999998876654333 3678888888653
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++.++||+|+++-.+|...... .....+++..++++|+|||.++++..
T Consensus 294 -~~~~~fDlIlsNPPfh~~~~~~--~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 294 -VEPFRFNAVLCNPPFHQQHALT--DNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -CCCCCEEEEEECcCcccCccCC--HHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 3456899999988777542111 12367899999999999999999864
No 96
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.11 E-value=2.6e-10 Score=105.15 Aligned_cols=111 Identities=24% Similarity=0.342 Sum_probs=86.7
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l 144 (771)
+.+|||+|||+|.++..+++.+..+++++|+++.+++.++....... .+++++++|+.+.. +++++||+|+.+-..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 46899999999999999999885599999999999998776665443 57999999998875 778999999998777
Q ss_pred ccccCc-ccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 DALMEP-ELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ~~l~~~-~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
...... .........+++++.++|+|||.++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 643221 11223467899999999999999998763
No 97
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.11 E-value=1.4e-09 Score=112.44 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=117.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||.|.|.++.+|....+.++|++|||++.+.+.|++...+. ..+|++|+.+|--+|.+...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~---------- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV---------- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc----------
Confidence 4578999999999999999999988899999999999999999998663 47899999999999977654
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCC-cCCcC---------cccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMT-CPAAD---------FVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s-~pp~~---------f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+||+. .+-...+-. |+.+. ..-+++++.++.+|+|+|.|.+=
T Consensus 113 ---------------------~~~fD~Ii~N--PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 113 ---------------------FASFDLIICN--PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred ---------------------ccccCEEEeC--CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 2469999983 332222222 44432 44588999999999999999853
Q ss_pred eccCChhHHHHHHHHHHH-hcc---ceEEee-ecCCccEEEEEecCCC
Q 004164 689 LVSRSQATKDMVISRMKM-VFN---HLFCLQ-LEEDVNLVLFGLSSES 731 (771)
Q Consensus 689 l~~~~~~~~~~v~~~l~~-vF~---~v~~~~-~~~~~N~Vl~a~~~~~ 731 (771)
.|... ...++..|++ -|. -++.++ .+...|.||+......
T Consensus 170 --~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~ 214 (248)
T COG4123 170 --HRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGG 214 (248)
T ss_pred --ecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCC
Confidence 35444 3457888887 444 233333 3556889988866553
No 98
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.09 E-value=3.1e-10 Score=114.91 Aligned_cols=116 Identities=15% Similarity=0.144 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEEEecc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVILDKG 142 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlVi~~~ 142 (771)
...+|||||||+|.++..++.. +..+++|+|+++.+++.++++....+ .+++++++|+.+++ ++++++|.|+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 34589999999999998877664433 58999999998753 5567999999875
Q ss_pred ccccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 143 GLDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 143 ~l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
...+...... ..-....++++++++|||||.+++.+.....
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 4433221100 0001257899999999999999998866443
No 99
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.09 E-value=1.2e-09 Score=118.64 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++....+ .+++++.+|+.+.+++ .+|+|+...+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~--~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP--EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--CCCEEEeEhh
Confidence 567899999999999999998873 358999997 788988776655443 5799999999876665 3799999999
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+..+.. ..++++++++.|+|||++++.++.
T Consensus 225 lh~~~~~~-----~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 225 LYSANEQL-----STIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhcCChHH-----HHHHHHHHHHhcCCCCEEEEEEec
Confidence 98765433 568999999999999999999864
No 100
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.09 E-value=7.7e-10 Score=115.12 Aligned_cols=106 Identities=23% Similarity=0.316 Sum_probs=89.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC-CCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ-FMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l~ 145 (771)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.......+.+...|+.+.+ ..+++||+|++..+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4678999999999999999988876 8999999999999887766544456788888887764 3457999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..+. ..+++.+.++|+|||++++....
T Consensus 126 ~~~~~-------~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 126 HVPDP-------ASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred ccCCH-------HHHHHHHHHHcCCCcEEEEEecC
Confidence 88764 38899999999999999987654
No 101
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=108.33 Aligned_cols=124 Identities=22% Similarity=0.328 Sum_probs=96.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-CCCC
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-MQFM 131 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~-l~~~ 131 (771)
....-++++..+. ....-|||||||+|..+..|.+.|. ..+|+|||+.|++.+.++-.+ -.++.+||-. +||.
T Consensus 36 m~eRaLELLalp~-~~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e----gdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 36 MAERALELLALPG-PKSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE----GDLILCDMGEGLPFR 109 (270)
T ss_pred HHHHHHHHhhCCC-CCCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh----cCeeeeecCCCCCCC
Confidence 3444455554421 2467899999999999999999996 899999999999988764322 4677888854 6999
Q ss_pred CCCccEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 132 DETFDVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
.++||-+|+..++.|+.+.+.. ...+..++..++.+|++|++.++.-|...
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 9999999999999888764422 12377889999999999999999887643
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.08 E-value=1.7e-09 Score=116.42 Aligned_cols=104 Identities=16% Similarity=0.291 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++.....+ ..+.+...+.. +..+++||+|+++...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKADVIVANILA 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCceEEEEecCH
Confidence 3678999999999999999988887799999999999998877654433 23555555532 3346789999987543
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
+. +..++.++.++|+|||+++++.+...
T Consensus 236 ~~----------l~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 236 EV----------IKELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred HH----------HHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 32 45889999999999999999887643
No 103
>PLN02476 O-methyltransferase
Probab=99.08 E-value=7.3e-10 Score=117.15 Aligned_cols=107 Identities=15% Similarity=0.265 Sum_probs=90.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+++||.||.|+|..+.++....| ..+|+++|+||+..++|+++| |+ .++++++.||+.+++.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl--~~~I~li~GdA~e~L~~l~~------ 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV--SHKVNVKHGLAAESLKSMIQ------ 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEcCHHHHHHHHHh------
Confidence 4578999999999999998888765 558999999999999999999 65 46899999999999987631
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
......||+||+|.+.... .++++.+.++|++||+++++
T Consensus 189 ---------------------~~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 189 ---------------------NGEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ---------------------cccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEe
Confidence 0112579999999876532 88999999999999999975
No 104
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=118.76 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=104.8
Q ss_pred CCCCHhhHHHHHhhcC-----CCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEE
Q 004164 24 DFTSKENWDKFFTIRG-----IGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNV 97 (771)
Q Consensus 24 ~f~~~~yWd~~y~~~~-----~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~v 97 (771)
.|...+||.. |.... ....|.|-. ...-...+...+.. ....+|||+|||+|.++..+++.. ..+|+++
T Consensus 152 ~~~~~~~~~~-y~~~~l~i~~~pgvFs~~~-lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~v 226 (342)
T PRK09489 152 VFDADKFWKE-YQVDGLTVKTLPGVFSRDG-LDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLS 226 (342)
T ss_pred CCccccccee-eecCCEEEEeCCCCCCCCC-CCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEE
Confidence 3666677764 33221 123344422 22333456666653 345689999999999999999874 3589999
Q ss_pred cCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 98 DFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 98 DiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+|+.+++.+++.....+...++...|+... .+++||+|+++..+|..... .......++.++.+.|+|||.++++
T Consensus 227 Dis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~--~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 227 DVSAAALESSRATLAANGLEGEVFASNVFSD--IKGRFDMIISNPPFHDGIQT--SLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCCccEEEECCCccCCccc--cHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 9999999988777665555567788887653 35789999999888864322 1234679999999999999999988
Q ss_pred EcC
Q 004164 178 TLA 180 (771)
Q Consensus 178 ~~~ 180 (771)
...
T Consensus 303 an~ 305 (342)
T PRK09489 303 ANA 305 (342)
T ss_pred EeC
Confidence 754
No 105
>PLN03075 nicotianamine synthase; Provisional
Probab=99.07 E-value=1.3e-09 Score=115.86 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=103.9
Q ss_pred CCCcEEEEecccc--HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG--LLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G--~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg--~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+.+|+.||+|.| +...+++.++|..+++++|+||++++.||+++. ..-.++++++.+|+.+....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~---------- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES---------- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----------
Confidence 6789999999966 444455678899999999999999999999993 22367999999999885211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
..+||+|++++--. +.-+ --.++|+.+.+.|+|||+|++-....-..+
T Consensus 193 -----------------------l~~FDlVF~~ALi~-----~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~ 240 (296)
T PLN03075 193 -----------------------LKEYDVVFLAALVG-----MDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAF 240 (296)
T ss_pred -----------------------cCCcCEEEEecccc-----cccc----cHHHHHHHHHHhcCCCcEEEEecccchHhh
Confidence 14699999985111 1000 128899999999999999998763222222
Q ss_pred HHH-HHHHHHHhccceEEeeecCC-ccEEEEEecCCC
Q 004164 697 KDM-VISRMKMVFNHLFCLQLEED-VNLVLFGLSSES 731 (771)
Q Consensus 697 ~~~-v~~~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~~ 731 (771)
... +-...-+-|..+..+...++ +|.|+|+.+...
T Consensus 241 LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~ 277 (296)
T PLN03075 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGG 277 (296)
T ss_pred cCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeecC
Confidence 111 11222236776666665544 589999988653
No 106
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.07 E-value=2e-09 Score=117.98 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF 130 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~ 130 (771)
.+...+..+... .++.+|||+|||+|.++..++..+. +++|+|+++.|+..+++.+...+ .++.+.++|+.++++
T Consensus 169 ~la~~~~~l~~~---~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 169 KLARAMVNLARV---TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHhCC---CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344455555443 5788999999999999988777666 89999999999997766654333 457899999999988
Q ss_pred CCCCccEEEeccccccccC--cccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 131 MDETFDVILDKGGLDALME--PELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~--~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.+++||+|+++-....... ..........++.++.++|+|||++++.......
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRID 299 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCC
Confidence 8889999998644322111 0111133679999999999999999988765433
No 107
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.05 E-value=9.4e-10 Score=113.58 Aligned_cols=105 Identities=25% Similarity=0.373 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCCCCC-CCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSMQFM-DETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~-~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~ 145 (771)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.++++...... ++++...|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 478999999999999999988776 799999999999988777655444 688999998877644 37899999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..++ ..++.++.++|+|||.+++.+..
T Consensus 124 ~~~~~-------~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVPDP-------QAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCCCH-------HHHHHHHHHhcCCCcEEEEEecC
Confidence 88764 48999999999999999887654
No 108
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.03 E-value=5.9e-09 Score=104.97 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=90.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
.++.+|||+|||+|.++..+++.. ..+|+++|+|+.+ ..+++.++++|+.+.+ ++.++||
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 578999999999999999888763 3579999999843 1256889999987643 4567899
Q ss_pred EEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhcc-CcEEEEeecCCCCCCCC
Q 004164 137 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKMSVHAIPQKSSSEP 211 (771)
Q Consensus 137 lVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~-~w~~~~~~i~~~~~~~~ 211 (771)
+|++.++.+... +........+.++.++.++|+|||++++..+..+.+. .++..... .|...+.. ...+...
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~ 177 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEID-EYLNELRKLFEKVKVTK--PQASRKR 177 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHH-HHHHHHHhhhceEEEeC--CCCCCcc
Confidence 999876432111 1000011246899999999999999998765433332 23333322 33344332 2223344
Q ss_pred CCccEEEE
Q 004164 212 SLQTFMVV 219 (771)
Q Consensus 212 ~l~~f~~v 219 (771)
.-+.|.+.
T Consensus 178 ~~~~~~~~ 185 (188)
T TIGR00438 178 SAEVYIVA 185 (188)
T ss_pred cceEEEEE
Confidence 55556553
No 109
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.03 E-value=1.7e-09 Score=113.54 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+.+|||+|||+|.++..++.. +..+++++|+++.+++.+++.....+ .++.++++|+.+ ++++++||+|+++-...
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 4569999999999999999987 33589999999999998877665433 368999999977 45678999999864433
Q ss_pred cccCc-------------------ccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEP-------------------ELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~-------------------~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..... ..+......++.++.++|+|||.+++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 21100 0011224578999999999999988864
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=2e-09 Score=114.77 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++... ..+++++|+|+.+++.+++... ....++.++.+|+.+. +.+++||+|+++-..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 467899999999999999998874 4689999999999998876654 2335799999998653 335789999985322
Q ss_pred cc-------------------ccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DA-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~-------------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. +....++......++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 11 11111223346889999999999999998854
No 111
>PTZ00146 fibrillarin; Provisional
Probab=99.02 E-value=2.6e-09 Score=113.13 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=91.7
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|......+...+..-+......++.+|||+|||+|.++..+++. + ...|+++|+++.+++.+.+.+. ..+++.++.
T Consensus 109 ~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~ 187 (293)
T PTZ00146 109 VWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPII 187 (293)
T ss_pred eeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEE
Confidence 366666666656655555555578899999999999999999987 3 3689999999988877766553 337899999
Q ss_pred eecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 123 MDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 123 ~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.|+... .+..++||+|++... .+ + ..+.++.+++++|||||.|++.
T Consensus 188 ~Da~~p~~y~~~~~~vDvV~~Dva---~p--d----q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 188 EDARYPQKYRMLVPMVDVIFADVA---QP--D----QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCccChhhhhcccCCCCEEEEeCC---Cc--c----hHHHHHHHHHHhccCCCEEEEE
Confidence 998642 223468999997653 12 2 1456677899999999999984
No 112
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=1.7e-09 Score=112.73 Aligned_cols=108 Identities=16% Similarity=0.288 Sum_probs=87.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||.||+|+|+.+.++....+ ..+|+++|+||..+++|+++| |+ +++++++.+|+.+++.+...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl--~~~i~~~~gda~~~L~~l~~------ 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV--DHKINFIQSDALSALDQLLN------ 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEEccHHHHHHHHHh------
Confidence 4578999999999988777777654 579999999999999999998 54 47899999999999987641
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-Ee
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NL 689 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl 689 (771)
......||+|++|++.... ..+++.+.++|+|||++++ |+
T Consensus 139 ---------------------~~~~~~fD~VfiDa~k~~y-------------~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 139 ---------------------NDPKPEFDFAFVDADKPNY-------------VHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred ---------------------CCCCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCeEEEEEcC
Confidence 0012579999999865422 5789999999999999986 44
No 113
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=1.9e-09 Score=112.68 Aligned_cols=110 Identities=14% Similarity=0.180 Sum_probs=90.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+++||.||.+.|..+.++....| ..+|+++|+||...++|+++| |+ .+++++++||+.++|.++...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~--~~~I~~~~G~a~e~L~~l~~~----- 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV--AHKIDFREGPALPVLDQMIED----- 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCceEEEeccHHHHHHHHHhc-----
Confidence 4678999999999988888877664 679999999999999999999 55 579999999999999986510
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE-Eec
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV-NLV 690 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~-Nl~ 690 (771)
......||+||+|++...+ ..+|+.+.++|++||++++ |+.
T Consensus 151 ---------------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 151 ---------------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred ---------------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCC
Confidence 0012579999999875532 7899999999999999986 443
No 114
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=3.7e-09 Score=113.40 Aligned_cols=111 Identities=19% Similarity=0.127 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
+..+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++-..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCC
Confidence 45799999999999999999873 3589999999999998877665443 4689999998652 345689999986221
Q ss_pred ------cccc------------CcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 ------DALM------------EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ------~~l~------------~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+. ..+++......++.++.++|+|||++++..-
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 1112234468899999999999999887653
No 115
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.01 E-value=2.7e-09 Score=98.31 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=85.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|.+...+.... ..++++||+||..+++|+..+... .+++++++++|..++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~------------- 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP------------- 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT-------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc-------------
Confidence 479999999999999999887 679999999999999999998432 25689999999999875443
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.|..-.... +. -....-....|++.+.++|+|+|++++-+
T Consensus 68 ------------------~~~~D~Iv~npP~~~~~-~~-~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 68 ------------------DGKFDLIVTNPPYGPRS-GD-KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ------------------TT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CceeEEEEECCCCcccc-cc-chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 37899999976332110 00 01112255799999999999999999865
No 116
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.01 E-value=2.9e-09 Score=117.89 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC-CCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++.....+.+++++++|+.+..+ ..++||+|+++-...
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 4569999999999999998875 44589999999999998877765555679999999976433 246899999865321
Q ss_pred ------------------cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ------------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++...+++....+.++..+.+.|+|||.+++..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 111122233447799999999999999987643
No 117
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.01 E-value=2.4e-09 Score=117.87 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC--CCCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--QFMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--~~~~~sFDlVi~~~ 142 (771)
..+..+||||||+|..+..++.. +..+++|+|+++.+++.+.++....+ .++.++++|+..+ .++++++|.|+...
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 45679999999999999999987 34689999999999999988775544 6899999999765 57889999999865
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
...|..... ..-....++.+++|+|+|||.+.+.+-..+.+
T Consensus 201 PdPW~KkrH-RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 PVPWDKKPH-RRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred CCCccccch-hhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 544422111 00013589999999999999999988775544
No 118
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.00 E-value=1.3e-09 Score=107.82 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=79.9
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDE 133 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~ 133 (771)
.+.+++. |+.+|||+|||.|.+..+|.+....+..|+|+++..+..+.++ .+.++++|+.+- .|+++
T Consensus 6 ~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 6 IIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCC
Confidence 4667774 7899999999999999999886434899999999888766543 478899999874 59999
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccc
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLK 169 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLk 169 (771)
+||.|+.+.+|.++..++ .+|.++.|+-+
T Consensus 75 sFD~VIlsqtLQ~~~~P~-------~vL~EmlRVgr 103 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPD-------EVLEEMLRVGR 103 (193)
T ss_pred CccEEehHhHHHhHhHHH-------HHHHHHHHhcC
Confidence 999999999999998776 88888877733
No 119
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.00 E-value=1.3e-08 Score=103.17 Aligned_cols=118 Identities=17% Similarity=0.153 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC-
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS- 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~- 127 (771)
......+..++.. .++.+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++....+ .+++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH
Confidence 3455556666653 57789999999999999999865 33589999999999998876654333 578999999865
Q ss_pred CCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++.....+|.|+..+. .. ...++.++.++|+|||++++......
T Consensus 103 ~~~~~~~~d~v~~~~~------~~-----~~~~l~~~~~~LkpgG~li~~~~~~~ 146 (196)
T PRK07402 103 LAQLAPAPDRVCIEGG------RP-----IKEILQAVWQYLKPGGRLVATASSLE 146 (196)
T ss_pred HhhCCCCCCEEEEECC------cC-----HHHHHHHHHHhcCCCeEEEEEeecHH
Confidence 2222234677654221 11 46899999999999999999887643
No 120
>PRK14968 putative methyltransferase; Provisional
Probab=99.00 E-value=7.8e-09 Score=103.45 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC-C--cEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS-D--MRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~-~--i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|.++..++..+. +++++|+|+.+++.+++.....+. + +.++..|+.+. +.+.+||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCC
Confidence 4678999999999999999998864 999999999999988766544332 2 88999998763 45568999998765
Q ss_pred cccccC--------------cccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALME--------------PELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~--------------~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+..... ...+......+++++.++|+|||.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 432110 0011223567899999999999998877543
No 121
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.98 E-value=1.7e-09 Score=117.82 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=90.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-------CC----CCcEEEEeecCCCC----CCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-------DR----SDMRWRVMDMTSMQ----FMD 132 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-------~~----~~i~~~~~D~~~l~----~~~ 132 (771)
++.+|||+|||.|.....+...+...++|+|+++..|+++++|+.. .. -...|+.+|..... +.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 7899999999999999888888888999999999999999999821 11 23567777776431 333
Q ss_pred --CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhh
Q 004164 133 --ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 190 (771)
Q Consensus 133 --~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~ 190 (771)
..||+|-+-.++|+....+. .++.+|.++...|+|||+||.++.....+...+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~---~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEE---KARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHH---HHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred cCCCcceeehHHHHHHhcCCHH---HHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 59999999999999886553 48899999999999999999999886666444433
No 122
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.98 E-value=3.7e-09 Score=111.42 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.....+- .+.+ +..+.+||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~--------~~~~~~fD~Vvani~~ 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYL--------PQGDLKADVIVANILA 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEE--------ccCCCCcCEEEEcCcH
Confidence 36789999999999999988888876799999999999988776644332 1221 1112379999986432
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+. ...++.++.++|||||++++..+..
T Consensus 190 ~~----------~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 190 NP----------LLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HH----------HHHHHHHHHHhcCCCcEEEEEECcH
Confidence 21 4588999999999999999987653
No 123
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.97 E-value=1.3e-09 Score=113.75 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=98.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---C----CcEEEEeecCC------CCCCCC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---S----DMRWRVMDMTS------MQFMDE 133 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~----~i~~~~~D~~~------l~~~~~ 133 (771)
+++..+|++|||-|......-++|...++++||++..|+++++|+.... . .+.|+++|... +++++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 4789999999999999998888899999999999999999999876432 1 36788998865 245666
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhh
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFP 190 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~ 190 (771)
+||+|-+-.++|+....+ ..++.+|.++.+.|+|||+||-+....+.+...+-.
T Consensus 196 ~fDivScQF~~HYaFete---e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETE---ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred CcceeeeeeeEeeeeccH---HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 799999999999866544 238899999999999999999888776666555444
No 124
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.97 E-value=4.8e-09 Score=112.66 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=82.1
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccc---
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGG--- 143 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~--- 143 (771)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .++.++++|+.+ +++..+||+|+++-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCC
Confidence 699999999999999999874 3589999999999998876654433 349999999876 344458999998621
Q ss_pred ----------cc-----cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 144 ----------LD-----ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 144 ----------l~-----~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+. ++...+++....+.++.++.++|+|||++++..-
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 1111222334588999999999999999887553
No 125
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=6e-09 Score=110.48 Aligned_cols=125 Identities=17% Similarity=0.252 Sum_probs=90.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++.+|||+|||+|.++...++.|...++|+|++|.+++.+++....++-. +.....+....+ ..+.||+|+++=..
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehhhH
Confidence 378999999999999999999999989999999999999887765444422 223333333322 23699999986533
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEeec
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAI 203 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~i 203 (771)
+- +..+...+.+.|||||+++++-....+ .+.....+ ..+|.+.-...
T Consensus 240 ~v----------l~~La~~~~~~lkpgg~lIlSGIl~~q-~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 240 EV----------LVELAPDIKRLLKPGGRLILSGILEDQ-AESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred HH----------HHHHHHHHHHHcCCCceEEEEeehHhH-HHHHHHHHHhCCCeEeEEEe
Confidence 22 568999999999999999999876554 33333444 45666654443
No 126
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=7.5e-09 Score=112.12 Aligned_cols=109 Identities=17% Similarity=0.114 Sum_probs=82.0
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc--
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL-- 144 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l-- 144 (771)
.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.....+ .+++++++|+.+. +++++||+|+++-..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999998873 4589999999999998877665443 4699999998652 345689999986211
Q ss_pred ----cc------------ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 145 ----DA------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 145 ----~~------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
.. +...+++......++.++.++|+|||++++...
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 111122334578999999999999999988543
No 127
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.95 E-value=3.5e-09 Score=107.23 Aligned_cols=90 Identities=22% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC-C-CCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS-M-QFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~-l-~~~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..+++....+++++|+|+.+++.+.+ .+++++++|+.+ + ++++++||+|++..+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------cCCeEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 567999999999999999987644478999999999987643 247889999876 4 46778999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHcccc
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
++.++. .+++++.+.+++
T Consensus 87 ~~~d~~-------~~l~e~~r~~~~ 104 (194)
T TIGR02081 87 ATRNPE-------EILDEMLRVGRH 104 (194)
T ss_pred cCcCHH-------HHHHHHHHhCCe
Confidence 987644 788888887664
No 128
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.95 E-value=6.8e-09 Score=96.28 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|.|.++..+...+|..+|++||+++.+++.|++++....-++++++.+|+..++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 85 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS-------------- 85 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--------------
Confidence 458999999999999999999888899999999999999998763222246899989877543322
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+|+++.. ... ..++++.+.+.|+|||.|++++.
T Consensus 86 ------------------~~~~D~v~~~~~-----------~~~--~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 ------------------LPEPDRVFIGGS-----------GGL--LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ------------------cCCCCEEEECCc-----------chh--HHHHHHHHHHHcCCCCEEEEEec
Confidence 147999999431 111 25899999999999999999875
No 129
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.94 E-value=1.1e-08 Score=102.94 Aligned_cols=146 Identities=13% Similarity=0.128 Sum_probs=100.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE
Q 004164 517 SYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH 596 (771)
Q Consensus 517 ~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~ 596 (771)
-+++.++..+.+.. .+ +.+.+||+||+|+|.++..+....|..+|++||+++.+++.|++...-..-++++++
T Consensus 28 ~~~~~~~d~l~l~~-~l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~ 100 (187)
T PRK00107 28 LWERHILDSLAIAP-YL------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVV 100 (187)
T ss_pred HHHHHHHHHHHHHh-hc------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEE
Confidence 35566655544432 12 235789999999999999888888889999999999999999987622111339999
Q ss_pred EcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHH
Q 004164 597 ITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVK 676 (771)
Q Consensus 597 i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~ 676 (771)
.+|+.++-. ..+||+|++.... . -..+++.+.
T Consensus 101 ~~d~~~~~~----------------------------------~~~fDlV~~~~~~-----~---------~~~~l~~~~ 132 (187)
T PRK00107 101 HGRAEEFGQ----------------------------------EEKFDVVTSRAVA-----S---------LSDLVELCL 132 (187)
T ss_pred eccHhhCCC----------------------------------CCCccEEEEcccc-----C---------HHHHHHHHH
Confidence 999877411 2579999985311 0 167999999
Q ss_pred HccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeec
Q 004164 677 DALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLE 717 (771)
Q Consensus 677 ~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~ 717 (771)
+.|+|||.|++-...........+...+.-.-..+|.+.++
T Consensus 133 ~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 133 PLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred HhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 99999999997654433333333333333334456666654
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.94 E-value=5.8e-09 Score=111.59 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=86.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++...++.|..+|+++|+++.+++.+++.+..++-.-.+...... ....+.||+|+++=..+-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~--~~~~~~~dlvvANI~~~v 237 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSE--DLVEGKFDLVVANILADV 237 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTS--CTCCS-EEEEEEES-HHH
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEec--ccccccCCEEEECCCHHH
Confidence 367899999999999999999999989999999999999887766555533233333222 233589999998754443
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
+..++..+.++|+|||+++++-+..... ..+...+..+|.+.-
T Consensus 238 ----------L~~l~~~~~~~l~~~G~lIlSGIl~~~~-~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 238 ----------LLELAPDIASLLKPGGYLILSGILEEQE-DEVIEAYKQGFELVE 280 (295)
T ss_dssp ----------HHHHHHHCHHHEEEEEEEEEEEEEGGGH-HHHHHHHHTTEEEEE
T ss_pred ----------HHHHHHHHHHhhCCCCEEEEccccHHHH-HHHHHHHHCCCEEEE
Confidence 4578899999999999999988764332 334444444665543
No 131
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=5.6e-09 Score=91.90 Aligned_cols=101 Identities=29% Similarity=0.351 Sum_probs=82.0
Q ss_pred eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCC-CCCCccEEEecccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQF-MDETFDVILDKGGLDALM 148 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~~l~ 148 (771)
+|||+|||+|..+..++..+..+++++|+++.+++.+++... ....++.+...|..+... ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~- 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL- 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence 589999999999999988555699999999999987763332 233678999999988753 56789999999998874
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.. ....+++.+.+.|++||.+++.
T Consensus 80 ~~-----~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VE-----DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hh-----HHHHHHHHHHHHcCCCCEEEEE
Confidence 11 2669999999999999999876
No 132
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.92 E-value=2.3e-09 Score=108.32 Aligned_cols=103 Identities=13% Similarity=0.177 Sum_probs=76.7
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCC--CcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRS--DMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~--~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
..++|+|||||..+.-++.. +.+|+|+|+|+.||+.+.+.....+. ..+....++.++.-.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 38999999999777777766 77999999999999877554322222 2233333444443348999999999999998
Q ss_pred cCcccchHHHHHHHHHHHHccccCe-EEEEEEcCc
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLAE 181 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG-~~ii~~~~~ 181 (771)
. .+++.+++.|+||+.| .+.+-.+.+
T Consensus 114 d--------le~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 114 D--------LERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred c--------hHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 5 5699999999999866 666666664
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-08 Score=102.60 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=95.5
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeec
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDM 125 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~ 125 (771)
+..-+.+...+.+++.. .++.+|||||||+|..+..|++... +|+.+|..+...+.|++++...+ .++.+.++|.
T Consensus 54 tis~P~~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 54 TISAPHMVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred eecCcHHHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 33445566677777765 7899999999999999999999855 89999999999999988776655 5899999999
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..---+...||.|+..++...++ +.+.+.|++||++++-.-
T Consensus 130 ~~G~~~~aPyD~I~Vtaaa~~vP-------------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 130 SKGWPEEAPYDRIIVTAAAPEVP-------------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCCCCcCEEEEeeccCCCC-------------HHHHHhcccCCEEEEEEc
Confidence 87543458999999988887765 456788999999998765
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.91 E-value=4.9e-08 Score=96.14 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=96.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l 128 (771)
.+++...+..|.. .+++.++|||||+|..+.+++..+ .++|+++|-++.+++...+...+- .+++..+.+|+.+.
T Consensus 20 ~EIRal~ls~L~~---~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRP---RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCC---CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence 3555555555543 789999999999999999999654 379999999999998654433222 37899999999875
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
--...+||.|+..|. -. ++.+++.+...|||||+++..-...+.....+-..-+.++
T Consensus 97 L~~~~~~daiFIGGg-~~----------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 97 LPDLPSPDAIFIGGG-GN----------IEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred hcCCCCCCEEEECCC-CC----------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 222237999999887 33 4589999999999999999877665444332222224466
No 135
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.90 E-value=3.1e-09 Score=105.30 Aligned_cols=131 Identities=16% Similarity=0.242 Sum_probs=93.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|.|.++..+....|..+|++||+++..++.|++.+....-+.++++.+|..+.+.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--------------- 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--------------- 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------------
Confidence 55789999999999999999999998999999999999999998843222229999999876432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+... +-. .|. ......-..|++.++++|+|+|.|++.. .+.... +.
T Consensus 96 -------------------~~~fD~Iv~NP--P~~-~~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~-~~~~~~-~~- 148 (170)
T PF05175_consen 96 -------------------DGKFDLIVSNP--PFH-AGG--DDGLDLLRDFIEQARRYLKPGGRLFLVI-NSHLGY-ER- 148 (170)
T ss_dssp -------------------TTCEEEEEE-----SB-TTS--HCHHHHHHHHHHHHHHHEEEEEEEEEEE-ETTSCH-HH-
T ss_pred -------------------ccceeEEEEcc--chh-ccc--ccchhhHHHHHHHHHHhccCCCEEEEEe-ecCCCh-HH-
Confidence 26799999943 110 000 0011235889999999999999997644 333332 22
Q ss_pred HHHHHHhccceEEee
Q 004164 701 ISRMKMVFNHLFCLQ 715 (771)
Q Consensus 701 ~~~l~~vF~~v~~~~ 715 (771)
.+++.|..+-.+.
T Consensus 149 --~l~~~f~~~~~~~ 161 (170)
T PF05175_consen 149 --LLKELFGDVEVVA 161 (170)
T ss_dssp --HHHHHHS--EEEE
T ss_pred --HHHHhcCCEEEEE
Confidence 2888998776654
No 136
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.90 E-value=3e-08 Score=100.50 Aligned_cols=134 Identities=13% Similarity=0.135 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||+|.|.+...+....|...+++||+++.+++.|++...-..-.+++++.+|+.++.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------ 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------
Confidence 44689999999999999999999999999999999999999876521112479999999998875532
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
....+|.|+++.. |+...-......++..++++.+.+.|+|||.|.+.. ........+
T Consensus 84 ------------------~~~~~d~v~~~~p--dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t--d~~~~~~~~ 141 (194)
T TIGR00091 84 ------------------PDGSLSKVFLNFP--DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT--DNEPLFEDM 141 (194)
T ss_pred ------------------CCCceeEEEEECC--CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe--CCHHHHHHH
Confidence 1247999999653 321111111234667899999999999999998654 455555556
Q ss_pred HHHHHHhc
Q 004164 701 ISRMKMVF 708 (771)
Q Consensus 701 ~~~l~~vF 708 (771)
++.+.+..
T Consensus 142 ~~~~~~~~ 149 (194)
T TIGR00091 142 LKVLSEND 149 (194)
T ss_pred HHHHHhCC
Confidence 66666653
No 137
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.89 E-value=4e-09 Score=103.51 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=70.6
Q ss_pred EEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 95 TNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 95 ~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
+|+|+|+.|++.++++.... ..+++|+++|+.++|+++++||+|++..+++++.+ ...++++++|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d-------~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD-------RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC-------HHHHHHHHHHHcCc
Confidence 58999999999887665321 24799999999999999999999999999999865 45999999999999
Q ss_pred CeEEEEEEcCcch
Q 004164 171 GGKFVCLTLAESH 183 (771)
Q Consensus 171 GG~~ii~~~~~~~ 183 (771)
||.+++.++..+.
T Consensus 74 GG~l~i~d~~~~~ 86 (160)
T PLN02232 74 GSRVSILDFNKSN 86 (160)
T ss_pred CeEEEEEECCCCC
Confidence 9999999988543
No 138
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.5e-08 Score=105.26 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=98.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~ 129 (771)
.-.+.|.+.+.. ....+|||+|||+|.++..|++.. ..+++.+|+|..+|+.+++......... .+...|+.+ +
T Consensus 145 ~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~-~ 220 (300)
T COG2813 145 KGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE-P 220 (300)
T ss_pred hHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc-c
Confidence 344567777765 456699999999999999999984 5799999999999998876665555443 566666655 3
Q ss_pred CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 130 FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
..+ +||+|+++-.+|.=... ......+++....+.|++||.+.++-.........+-+.|
T Consensus 221 v~~-kfd~IisNPPfh~G~~v--~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAV--VHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred ccc-cccEEEeCCCccCCcch--hHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 333 99999999999863322 2234669999999999999999998875444433333333
No 139
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.88 E-value=1.3e-08 Score=105.24 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=100.5
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCC--CC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ--FM 131 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~--~~ 131 (771)
|..+... ....+|||+|||+|.++..++++ ...+|++||+.+.+.+.|++..... ..+++++++|+.++. ..
T Consensus 36 L~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPV---PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccc---ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 4455543 44889999999999999999998 5479999999999999776554332 268999999999873 44
Q ss_pred CCCccEEEeccccccccCcc-cch----------HHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhcc-CcEE
Q 004164 132 DETFDVILDKGGLDALMEPE-LGH----------KLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRF-GWKM 198 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~-~~~----------~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~-~w~~ 198 (771)
..+||+|+++-..+...... ..+ ...+.+++...++||+||.+.++.-. .....+....+. .|..
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~--erl~ei~~~l~~~~~~~ 189 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP--ERLAEIIELLKSYNLEP 189 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH--HHHHHHHHHHHhcCCCc
Confidence 45799999998877655440 011 12889999999999999999998654 333344444433 4433
No 140
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.86 E-value=4.3e-08 Score=99.98 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=93.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHh-hccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE-MKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~-~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..|...+|..+|++||+++.+++.|++.+....-++++++++|+.+.+.. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~----------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP----------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC-----------
Confidence 457899999999999999998889889999999999999999887332225699999999554442 21
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
...||+|++..- ++.......-.......+|+.+.+.|+|||.|++- +........
T Consensus 109 --------------------~~~~D~V~~~~~--~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~--~~~~~~~~~ 164 (202)
T PRK00121 109 --------------------DGSLDRIYLNFP--DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA--TDWEGYAEY 164 (202)
T ss_pred --------------------ccccceEEEECC--CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE--cCCHHHHHH
Confidence 256999998431 11100000011234588999999999999999964 344555555
Q ss_pred HHHHHHH
Q 004164 700 VISRMKM 706 (771)
Q Consensus 700 v~~~l~~ 706 (771)
+++.+++
T Consensus 165 ~~~~~~~ 171 (202)
T PRK00121 165 MLEVLSA 171 (202)
T ss_pred HHHHHHh
Confidence 5555554
No 141
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.85 E-value=3.1e-08 Score=99.14 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|+|.++..+....|..+|++||+++.+++.|++.. ++ ++++++.+|+.++. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~---~~i~~i~~d~~~~~---~---------- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL---NNVEIVNGRAEDFQ---H---------- 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC---CCeEEEecchhhcc---c----------
Confidence 57899999999999998888888889999999999999988764 43 35999999988751 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.+. - .. -..+++.+.+.|+|||.+++-.
T Consensus 107 ---------------------~~~fD~I~s~~--~---~~---------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 ---------------------EEQFDVITSRA--L---AS---------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---------------------cCCccEEEehh--h---hC---------HHHHHHHHHHhcCCCCEEEEEc
Confidence 25799999854 1 11 1568899999999999999754
No 142
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=3.2e-08 Score=112.37 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--CCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--FMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..+++.+. ..|+++|+++.+++.+++++...+.+++++++|+.+++ ++.++||.|++...
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 5789999999999999999988743 58999999999999998877666656789999998764 34578999995432
Q ss_pred cccc------------cCcccc---hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDAL------------MEPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l------------~~~~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.... ...++- .....+++..+.++|||||++++++.+
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2110 010000 012568999999999999999988864
No 143
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.85 E-value=1.2e-08 Score=104.25 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=86.9
Q ss_pred cchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 48 AEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 48 ~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
-..+.+...+.+++.. .|+.+|||||||+|..+..|+.. |. ..|+++|+.+...+.++++....+ .++.++++|
T Consensus 55 is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 55 ISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp E--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred chHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 3455666677777775 79999999999999999999886 43 479999999999999988876544 589999999
Q ss_pred cCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 125 MTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 125 ~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
....--+...||.|+..+....++ ..|.+.|++||++++.--
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~ip-------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEIP-------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred hhhccccCCCcCEEEEeeccchHH-------------HHHHHhcCCCcEEEEEEc
Confidence 876544557899999988776542 558888999999998654
No 144
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.83 E-value=2.5e-08 Score=108.31 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=85.4
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-C-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-F-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMT 126 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~ 126 (771)
.+.+...+.+.+.. .++.+|||+|||+|.++..+++.. . +.|+++|+++.+++.++++....+ .++.++++|..
T Consensus 65 ~p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~ 141 (322)
T PRK13943 65 QPSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY 141 (322)
T ss_pred cHHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh
Confidence 34444555555543 577899999999999999998863 2 469999999999998877665433 56899999987
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.....++||+|++...+.. ....+.+.|+|||++++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~-------------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDE-------------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHH-------------hHHHHHHhcCCCCEEEEEe
Confidence 76555578999998654443 3455788999999988754
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=4.1e-08 Score=97.20 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++... .++++++.+|+.++++++.+||.|+++-..+.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence 467899999999999999999985 4899999999999988766633 46899999999999887778999998755442
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.. ..+.++++.. .+.++|.+++..
T Consensus 90 -~~-----~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 -ST-----PILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred -HH-----HHHHHHHhcC--CCcceEEEEEEH
Confidence 21 1133443321 234677776643
No 146
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.81 E-value=4e-08 Score=103.54 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=79.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC-C-CCCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM-Q-FMDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l-~-~~~~sFDlVi~~~~l~ 145 (771)
..+|||+|||+|.++..++.. +..+|+++|+|+.+++.+++.+...+ .+++++|+.+. + ...++||+|+++-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 458999999999999999876 33489999999999998766654332 58899998763 2 1135799999874322
Q ss_pred c-------------------ccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 A-------------------LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~-------------------l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
. +....++...++.++..+.++|+|||++++..-.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 1 1111122334678999999999999999987643
No 147
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=6.6e-08 Score=109.64 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi~~~ 142 (771)
.++.+|||+|||+|..+..++.. +.++|+++|+|+.+++.+++++...+ .++.+.++|+..++ +.+++||.|++..
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 57889999999999999999876 24589999999999999987776554 45889999998875 4567899999643
Q ss_pred ccccccC----ccc-------c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 143 GLDALME----PEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 143 ~l~~l~~----~~~-------~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
....+.. ++. . .....++|.++.++|||||+++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 2221111 110 0 012578899999999999999999876
No 148
>PRK00811 spermidine synthase; Provisional
Probab=98.77 E-value=4.5e-08 Score=104.97 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc------CCCCcEEEEeecCCC-CCCCCCccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR------DRSDMRWRVMDMTSM-QFMDETFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~------~~~~i~~~~~D~~~l-~~~~~sFDlVi 139 (771)
...+||+||||+|..+.++.+. +..+|+++|+++.+++.+++.+.. ..++++++.+|+... ...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4679999999999999999887 567999999999999988765532 247899999998764 33467899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..+-....... -.-..+++.+++.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~---l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEG---LFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhh---hhHHHHHHHHHHhcCCCcEEEEeC
Confidence 854322211100 013578899999999999998753
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=7.2e-08 Score=109.68 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC----CCCCCccEEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ----FMDETFDVIL 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~----~~~~sFDlVi 139 (771)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .+++++++|+.+++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 57899999999999999999886 2 3589999999999998877765554 46899999998875 4467899999
Q ss_pred ec------cccccccCccc-----c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DK------GGLDALMEPEL-----G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~------~~l~~l~~~~~-----~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.. |++...++..- . .....++|.++.++|||||+++.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 63 33333222100 0 012568999999999999999988765
No 150
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.76 E-value=7.1e-08 Score=97.01 Aligned_cols=116 Identities=10% Similarity=0.125 Sum_probs=85.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..+....|..+|++||+++.+++.|++.+....-++++++.+|+... .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~---~------------- 94 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE---L------------- 94 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh---c-------------
Confidence 456899999999999999998888889999999999999999875211114699999986321 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
..+||+|+++.... .-.++++.+.+.|+|||.++++.+.... ...+
T Consensus 95 -------------------~~~~D~v~~~~~~~-------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~ 140 (187)
T PRK08287 95 -------------------PGKADAIFIGGSGG-------------NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSA 140 (187)
T ss_pred -------------------CcCCCEEEECCCcc-------------CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHH
Confidence 14699999853110 1167899999999999999998654322 2344
Q ss_pred HHHHHH
Q 004164 701 ISRMKM 706 (771)
Q Consensus 701 ~~~l~~ 706 (771)
+..+++
T Consensus 141 ~~~l~~ 146 (187)
T PRK08287 141 LAHLEK 146 (187)
T ss_pred HHHHHH
Confidence 555554
No 151
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.76 E-value=8.4e-08 Score=108.94 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=87.9
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeecCCCCC--
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDMTSMQF-- 130 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~--~~~D~~~l~~-- 130 (771)
.+...+.. .++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++....+-.+.+ ..+|....++
T Consensus 229 ~~~~~L~~---~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAP---QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCC---CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 34444543 57899999999999999999886 4458999999999999887777655533333 6666665443
Q ss_pred CCCCccEEEec------cccccccCcc------c---chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDK------GGLDALMEPE------L---GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~------~~l~~l~~~~------~---~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.++||.|+.. |+++..++.. + -......+|.++.++|||||+++.++.+
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 56789999953 3444332210 0 0012578999999999999999999876
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.76 E-value=8.5e-08 Score=101.90 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=85.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.+|||+|||+|..+..+++. + .+.|+++|+++.+++.++++....+ .++.+.+.|+..++...++||+|+....
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 57889999999999999998875 2 3589999999999998887775554 4689999998877655567999996322
Q ss_pred cccc----cCcccc-----------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDAL----MEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l----~~~~~~-----------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.... .+++.. .....++|.++.++|||||+++.++.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2111 111100 012467999999999999999988876
No 153
>PRK04457 spermidine synthase; Provisional
Probab=98.75 E-value=8.5e-08 Score=101.70 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCC-CCCCCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSM-QFMDETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l-~~~~~sFDlVi~~~~ 143 (771)
+..+|||||||+|.++..++.. +..+|+++|+++.+++.+++.+... .++++++.+|+.+. .-..++||+|+...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 4578999999999999999876 4458999999999999887765432 36899999998654 22236899999643
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
++....+. ......+++++.+.|+|||++++..+..+
T Consensus 145 ~~~~~~~~--~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 FDGEGIID--ALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCCcc--ccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 21110000 00135899999999999999998655443
No 154
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=9e-08 Score=109.24 Aligned_cols=114 Identities=23% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEec--
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDK-- 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~-- 141 (771)
.++.+|||+|||+|..+..+++. +.++|+++|+|+.+++.+++++...+ .+++++++|+.+++ ++++||+|+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 57789999999999999888875 23589999999999998887776554 46899999998875 45789999952
Q ss_pred ----ccccccc------Ccccc---hHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 142 ----GGLDALM------EPELG---HKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 142 ----~~l~~l~------~~~~~---~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
|++..-+ +++.- ......+|.++.++|||||+++..+.+-
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2222111 10000 0124579999999999999999999763
No 155
>PHA03411 putative methyltransferase; Provisional
Probab=98.74 E-value=6.9e-08 Score=101.39 Aligned_cols=112 Identities=16% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+..+|||+|||+|.++..++... ..+|+++|+++.+++.++++. +++.++++|+.+... +.+||+|+++-.+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~----~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL----PEAEWITSDVFEFES-NEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----cCCEEEECchhhhcc-cCCCcEEEEcCCccc
Confidence 45799999999999998887752 358999999999998775542 578999999998753 468999999988887
Q ss_pred ccCcccch-----------HH--HHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 147 LMEPELGH-----------KL--GNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 147 l~~~~~~~-----------~~--~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
+...+... .. +...+.....+|+|+|.+++.-.+.+.+
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y 189 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY 189 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc
Confidence 65432111 00 3678889999999999887775444443
No 156
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.73 E-value=4.7e-08 Score=94.87 Aligned_cols=111 Identities=20% Similarity=0.259 Sum_probs=84.8
Q ss_pred CCCcEEEEeccccHHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~-~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
+..+||+||+|+|.+...|. ...|..++++||+++.+++.|++.+ ++ ++++++++|..+ +...-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~---~ni~~~~~d~~~-l~~~~-------- 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL---DNIEFIQGDIED-LPQEL-------- 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS---TTEEEEESBTTC-GCGCS--------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc---cccceEEeehhc-ccccc--------
Confidence 45789999999999999998 5667889999999999999999965 55 389999999987 33210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
...||+|+....- ..+-+ ..+|+.+.+.|+++|++++.......+
T Consensus 71 -----------------------~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 71 -----------------------EEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp -----------------------STTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred -----------------------CCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 1579999995211 22222 478999999999999999887663444
Q ss_pred HH
Q 004164 696 TK 697 (771)
Q Consensus 696 ~~ 697 (771)
..
T Consensus 117 ~~ 118 (152)
T PF13847_consen 117 LP 118 (152)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 157
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1e-07 Score=97.86 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=97.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+|+..|.|.|.|+++|.... |.-+|+.+|++++-++.|++.| |+ .+++++..+|..+++..
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l--~d~v~~~~~Dv~~~~~~--------- 161 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL--GDRVTLKLGDVREGIDE--------- 161 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc--ccceEEEeccccccccc---------
Confidence 345799999999999999999754 5579999999999999999987 55 56689999998876432
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
..||+|++|+-.+ .++++.+++.|+|||.+++-+ +.-+
T Consensus 162 -------------------------~~vDav~LDmp~P---------------W~~le~~~~~Lkpgg~~~~y~--P~ve 199 (256)
T COG2519 162 -------------------------EDVDAVFLDLPDP---------------WNVLEHVSDALKPGGVVVVYS--PTVE 199 (256)
T ss_pred -------------------------cccCEEEEcCCCh---------------HHHHHHHHHHhCCCcEEEEEc--CCHH
Confidence 3699999988544 889999999999999999765 4444
Q ss_pred HHHHHHHHHHHh-ccceE
Q 004164 696 TKDMVISRMKMV-FNHLF 712 (771)
Q Consensus 696 ~~~~v~~~l~~v-F~~v~ 712 (771)
..+..+..|++. |-++-
T Consensus 200 Qv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 200 QVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHHHHHHHHHhcCccchh
Confidence 456678888888 66543
No 158
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.70 E-value=2.8e-07 Score=93.60 Aligned_cols=120 Identities=13% Similarity=0.130 Sum_probs=88.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||++|+|+|.++..+.... +..+|++||+++.+++.|++.+.... .+++.++.+|+.+++....
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~---------- 109 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN---------- 109 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC----------
Confidence 45689999999999988877654 55699999999999999988752211 3678999999988765532
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..||+|++..... .-..+++.+.+.|+|||.+++.... .+...
T Consensus 110 ----------------------~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~ 152 (198)
T PRK00377 110 ----------------------EKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAIL--LETVN 152 (198)
T ss_pred ----------------------CCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeec--HHHHH
Confidence 4699999843111 1167899999999999999986542 23334
Q ss_pred HHHHHHHHh
Q 004164 699 MVISRMKMV 707 (771)
Q Consensus 699 ~v~~~l~~v 707 (771)
.+...|++.
T Consensus 153 ~~~~~l~~~ 161 (198)
T PRK00377 153 NALSALENI 161 (198)
T ss_pred HHHHHHHHc
Confidence 556666543
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.68 E-value=6.6e-09 Score=103.91 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=83.3
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDET 134 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~s 134 (771)
+.+.|......+-.++||+|||||..+..|.+.-. +++|+|+|+.|++.+.++- .+. +..+.|+..+ ...++.
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~eKg--~YD--~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHEKG--LYD--TLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHhcc--chH--HHHHHHHHHHhhhccCCc
Confidence 44444443334578999999999999999977644 8999999999998776542 111 2233333322 145688
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
||+|.+..++-++... +.++.-+...|+|||.|.++.-.
T Consensus 189 ~DLi~AaDVl~YlG~L-------e~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 189 FDLIVAADVLPYLGAL-------EGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred ccchhhhhHHHhhcch-------hhHHHHHHHhcCCCceEEEEecc
Confidence 9999999999998874 48999999999999999997643
No 160
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.67 E-value=3.8e-07 Score=96.97 Aligned_cols=137 Identities=13% Similarity=0.121 Sum_probs=103.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|.|.|..+.++...++. ..|++||+++..++.+++.+.-..-.+++++.+|+..+-..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~------------- 137 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA------------- 137 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------------
Confidence 4468999999999999998887753 58999999999999999887321113589999999775221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCCcEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~Gil 685 (771)
...||+|++|+-.+. .|+....+.. ...++|+.+.+.|+|||.+
T Consensus 138 --------------------~~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 195 (264)
T TIGR00446 138 --------------------VPKFDAILLDAPCSG--EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVL 195 (264)
T ss_pred --------------------ccCCCEEEEcCCCCC--CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 135999999984431 2322222221 3467899999999999999
Q ss_pred EEEeccCChhHHHHHHHHHHHhccceE
Q 004164 686 IVNLVSRSQATKDMVISRMKMVFNHLF 712 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~vF~~v~ 712 (771)
++-..+...+..+.+++.+.+.++...
T Consensus 196 vYstcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 196 VYSTCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EEEeCCCChHHHHHHHHHHHHhCCCcE
Confidence 998888888888889999888777543
No 161
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.66 E-value=4e-07 Score=97.74 Aligned_cols=116 Identities=16% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||++|+|+|+++..+....|..+|++||+++.++++|++..... -+++++++.+|..+.+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~-------------- 186 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP-------------- 186 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--------------
Confidence 346899999999999999999999899999999999999999987321 14689999999866431
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----CcCCcCc--------ccHHHHHHHHHccCCCcE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~-----s~pp~~f--------~~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.|.--.... ..+ .-|...+ .-..+++.+.+.|+|||.
T Consensus 187 --------------------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 187 --------------------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred --------------------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 14699999963110000 001 0011111 125678999999999999
Q ss_pred EEEEec
Q 004164 685 FIVNLV 690 (771)
Q Consensus 685 lv~Nl~ 690 (771)
+++.+.
T Consensus 247 l~~e~g 252 (284)
T TIGR03533 247 LVVEVG 252 (284)
T ss_pred EEEEEC
Confidence 999875
No 162
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.2e-07 Score=99.35 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=83.8
Q ss_pred eEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEeccccc---
Q 004164 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLD--- 145 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~--- 145 (771)
+|||+|||+|.++..++.... .+|+++|+|+.+++.|++.+...+ .++.++..|...- .. ++||+|+++-.-=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cC-CceeEEEeCCCCCCCc
Confidence 799999999999999998854 599999999999998866665554 4556666665542 22 4899999763210
Q ss_pred ---------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEc-Ccchhhcchhh
Q 004164 146 ---------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL-AESHVLGLLFP 190 (771)
Q Consensus 146 ---------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~-~~~~~~~~l~~ 190 (771)
++....++.....+++.++.+.|+|||.+++..- .+......++.
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 1112223345689999999999999999888664 44443333333
No 163
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.66 E-value=1.7e-07 Score=99.01 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=79.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+||+||+|+|.++..|...+|..+|++||+++.+++.|++. +++++++|+.++. .
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~---~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK---P----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC---C-----------
Confidence 355789999999999999999998888999999999999999863 4788889986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||+|+... . ..-+ | -...+++.+.+.|+|||.|++++..
T Consensus 87 --------------------~~~fD~v~~~~--~--l~~~--~----d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 --------------------KPDTDVVVSNA--A--LQWV--P----EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------------CCCceEEEEeh--h--hhhC--C----CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 25799999832 1 0111 1 1277899999999999999998654
No 164
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.66 E-value=2.2e-07 Score=94.17 Aligned_cols=105 Identities=19% Similarity=0.141 Sum_probs=81.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+....|..+|++||+||.+++.|++++.-..-++++++.+|+.+.+....
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~------------ 107 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA------------ 107 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC------------
Confidence 44689999999999999888777878999999999999999987521111469999999977544322
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+|.|++|... . -..+++.+.+.|+|||.|+++...
T Consensus 108 --------------------~~~d~v~~~~~~-----~---------~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --------------------PAPDRVCIEGGR-----P---------IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --------------------CCCCEEEEECCc-----C---------HHHHHHHHHHhcCCCeEEEEEeec
Confidence 346778875311 0 168999999999999999998754
No 165
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=2.1e-07 Score=106.23 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=87.4
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--C
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--F 130 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~ 130 (771)
.+...+.. .++.+|||+|||+|..+..+++. +.++|+++|+++.+++.++++....+ .+++++++|+.++. +
T Consensus 241 lv~~~l~~---~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 241 LVAPALDP---KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHhCC---CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 34444443 57789999999999999999886 34689999999999998877665544 46899999998763 3
Q ss_pred CCCCccEEEecccccccc----Cccc-------c----hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 131 MDETFDVILDKGGLDALM----EPEL-------G----HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~----~~~~-------~----~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ ++||+|++........ .++. . ......++..+.++|||||+++..+.+
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 7899999754321110 0100 0 012457899999999999999977654
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.64 E-value=1.6e-07 Score=98.42 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
.+..+|||||+|.|.++..+++. +..+++..|. |.+++.+.+ .++++++.+|+. -+++. +|+++.+.+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 45679999999999999999887 4458999998 778877755 578999999999 56765 99999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccC--eEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSG--GKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpG--G~~ii~~~~ 180 (771)
...+.+ ...+|+++++.|+|| |++++.+..
T Consensus 170 ~~~d~~-----~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DWSDED-----CVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS-HHH-----HHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hcchHH-----HHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 987655 789999999999999 999999865
No 167
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.64 E-value=2.9e-07 Score=110.65 Aligned_cols=151 Identities=16% Similarity=0.036 Sum_probs=99.4
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~ 122 (771)
+|-+....+..+.++. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .++++++
T Consensus 522 ~flDqr~~R~~~~~~~------~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~ 595 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA------KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQ 595 (702)
T ss_pred ECHHHHHHHHHHHHhc------CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEE
Confidence 4544444455555543 467999999999999999999887789999999999998877665443 3689999
Q ss_pred eecCCCC-CCCCCccEEEeccccccccCc----ccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcE
Q 004164 123 MDMTSMQ-FMDETFDVILDKGGLDALMEP----ELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWK 197 (771)
Q Consensus 123 ~D~~~l~-~~~~sFDlVi~~~~l~~l~~~----~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~ 197 (771)
+|+.+.- -..++||+|++.-.-..-... .........++..+.++|+|||.+++.+... ++..........++.
T Consensus 596 ~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~~~~~~~~~~~~g~~ 674 (702)
T PRK11783 596 ADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-GFKMDEEGLAKLGLK 674 (702)
T ss_pred ccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-cCChhHHHHHhCCCe
Confidence 9987631 114689999975322111000 0011236688999999999999998876542 222221111234566
Q ss_pred EEEeec
Q 004164 198 MSVHAI 203 (771)
Q Consensus 198 ~~~~~i 203 (771)
+.....
T Consensus 675 ~~~i~~ 680 (702)
T PRK11783 675 AEEITA 680 (702)
T ss_pred EEEEec
Confidence 665443
No 168
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=4.3e-07 Score=96.84 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..+...+|..+++++|+++.+++.|++.+......+++++.+|..+.+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--------------- 172 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--------------- 172 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---------------
Confidence 45689999999999999999999989999999999999999998752234679999998743211
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CC------CcCCcCcc--------cHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GM------TCPAADFV--------EGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~--g~------s~pp~~f~--------~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.--..... .+ .-|...+. -..+++.+.+.|+|||.
T Consensus 173 -------------------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 173 -------------------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred -------------------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531110000 00 01111222 25688888899999999
Q ss_pred EEEEeccCChhHHHHHHHHHHH-hccceEEeeecCCccEEEEEe
Q 004164 685 FIVNLVSRSQATKDMVISRMKM-VFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 685 lv~Nl~~~~~~~~~~v~~~l~~-vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
+++..-.... ..+...+++ -|..+....--.+...++++.
T Consensus 234 l~~e~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 234 LLLEIGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred EEEEECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 9997633222 233444443 355444443233455666653
No 169
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.62 E-value=5.1e-07 Score=89.03 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=96.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~---Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.+..++++||+|+|+++..+....|..+|+++|-|++.++..++. ||+ +++.++.+||-+++.+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~L~~~--------- 100 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEALPDL--------- 100 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHhhcCC---------
Confidence 345689999999999999888888999999999999999988766 564 68999999999998764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
.++|+||+ +-+ .++ ++.|+.+...|++||.+|+|.+.-...
T Consensus 101 ------------------------~~~daiFI----GGg-~~i---------~~ile~~~~~l~~ggrlV~naitlE~~- 141 (187)
T COG2242 101 ------------------------PSPDAIFI----GGG-GNI---------EEILEAAWERLKPGGRLVANAITLETL- 141 (187)
T ss_pred ------------------------CCCCEEEE----CCC-CCH---------HHHHHHHHHHcCcCCeEEEEeecHHHH-
Confidence 26999999 211 333 899999999999999999999765433
Q ss_pred HHHHHHHHHHhcc-ceEEee
Q 004164 697 KDMVISRMKMVFN-HLFCLQ 715 (771)
Q Consensus 697 ~~~v~~~l~~vF~-~v~~~~ 715 (771)
..+++.+++.=- ++..+.
T Consensus 142 -~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 142 -AKALEALEQLGGREIVQVQ 160 (187)
T ss_pred -HHHHHHHHHcCCceEEEEE
Confidence 234555544422 444443
No 170
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.62 E-value=5.6e-07 Score=99.72 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=92.3
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC---CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG---FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg---~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+||+||+|.|.++..+...+|..+|++||+++.+++.|++.+. .....+++++.+|+...+ .
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---~----------- 295 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---E----------- 295 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---C-----------
Confidence 58999999999999999999999999999999999999998862 211247899999986532 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+++ .+-.. +.. ... -....++..++++|+|||.|.+-. .+.-.
T Consensus 296 --------------------~~~fDlIlsN--PPfh~-~~~-~~~-~ia~~l~~~a~~~LkpGG~L~iV~-nr~l~---- 345 (378)
T PRK15001 296 --------------------PFRFNAVLCN--PPFHQ-QHA-LTD-NVAWEMFHHARRCLKINGELYIVA-NRHLD---- 345 (378)
T ss_pred --------------------CCCEEEEEEC--cCccc-Ccc-CCH-HHHHHHHHHHHHhcccCCEEEEEE-ecCcC----
Confidence 2479999993 22111 100 011 124678999999999999888643 33333
Q ss_pred HHHHHHHhccceEEe
Q 004164 700 VISRMKMVFNHLFCL 714 (771)
Q Consensus 700 v~~~l~~vF~~v~~~ 714 (771)
....|++.|..+-.+
T Consensus 346 y~~~L~~~fg~~~~v 360 (378)
T PRK15001 346 YFHKLKKIFGNCTTI 360 (378)
T ss_pred HHHHHHHHcCCceEE
Confidence 346677789876554
No 171
>PHA03412 putative methyltransferase; Provisional
Probab=98.62 E-value=4.7e-07 Score=93.14 Aligned_cols=119 Identities=13% Similarity=0.160 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA----GFHGITNVDFSKVVISDMLRRNVRDRSDMRW 120 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~----g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~ 120 (771)
+-|.....+...+... . ..+.+|||+|||+|.++..++.. +..+|+++|+++.+++.+++.. +++.+
T Consensus 31 GqFfTP~~iAr~~~i~--~---~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----~~~~~ 101 (241)
T PHA03412 31 GAFFTPIGLARDFTID--A---CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----PEATW 101 (241)
T ss_pred CccCCCHHHHHHHHHh--c---cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----cCCEE
Confidence 4455555665544322 1 24679999999999999988764 2348999999999998776443 46899
Q ss_pred EEeecCCCCCCCCCccEEEeccccccccCccc-----chHHHHHHHHHHHHccccCeE
Q 004164 121 RVMDMTSMQFMDETFDVILDKGGLDALMEPEL-----GHKLGNQYLSEVKRLLKSGGK 173 (771)
Q Consensus 121 ~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~-----~~~~~~~~l~~i~rvLkpGG~ 173 (771)
+..|+...++ +++||+|+++-.+..+...+. +......++....+++++|+.
T Consensus 102 ~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 102 INADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999987665 468999999877765442221 112356788888887776664
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.62 E-value=4e-07 Score=101.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=90.8
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWR 121 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~ 121 (771)
.||-+....+..+..+. ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++.+...+ .+++++
T Consensus 203 G~flDqr~~R~~~~~~~------~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i 276 (396)
T PRK15128 203 GYYLDQRDSRLATRRYV------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV 276 (396)
T ss_pred CcChhhHHHHHHHHHhc------CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEE
Confidence 35555444444444443 468999999999999988776676799999999999998876665443 368999
Q ss_pred EeecCCCC--C--CCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 122 VMDMTSMQ--F--MDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 122 ~~D~~~l~--~--~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+.- + ..++||+|++.-....-.... .....+..++....++|+|||.+++.+.+
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99997741 2 246899999764432211000 00112567777889999999999987754
No 173
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.62 E-value=1.3e-07 Score=95.05 Aligned_cols=130 Identities=19% Similarity=0.234 Sum_probs=101.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+-+.|-|..+....+.. ..+|..||-||.|+++|+-.- ++ .+.+++++.||+.+++++..
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~-------- 202 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFD-------- 202 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCC--------
Confidence 456799999999998877666663 239999999999999997554 33 24479999999999999976
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC----
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR---- 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~---- 692 (771)
+..||+||.|- +--+ -+.++++.+|++.+.+.|++||-+.--+-.+
T Consensus 203 -----------------------D~sfDaIiHDP--PRfS-----~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry 252 (287)
T COG2521 203 -----------------------DESFDAIIHDP--PRFS-----LAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY 252 (287)
T ss_pred -----------------------ccccceEeeCC--Cccc-----hhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc
Confidence 47799999964 2111 2558999999999999999999887555333
Q ss_pred -ChhHHHHHHHHHHHh-cc
Q 004164 693 -SQATKDMVISRMKMV-FN 709 (771)
Q Consensus 693 -~~~~~~~v~~~l~~v-F~ 709 (771)
.......+..+|+++ |.
T Consensus 253 rG~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 253 RGLDLPKGVAERLRRVGFE 271 (287)
T ss_pred ccCChhHHHHHHHHhcCce
Confidence 334567889999988 54
No 174
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.61 E-value=1.5e-06 Score=90.19 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=78.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+.. |..+|++||+++.+++.|++.+.-..-++++++.+|+.++- .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~------------ 110 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--F------------ 110 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--C------------
Confidence 45789999999999999888775 56799999999999999998863212257899999986541 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...+||+|++...-. .+. . ...+|+.+.+.|+|||.+++
T Consensus 111 -------------------~~~~fD~V~~~~~l~----~~~----~--~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 111 -------------------DDNSFDYVTIGFGLR----NVP----D--YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred -------------------CCCCccEEEEecccc----cCC----C--HHHHHHHHHHHcCcCeEEEE
Confidence 125799999842111 111 1 25789999999999999986
No 175
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.3e-07 Score=95.25 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=86.7
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKS 592 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r 592 (771)
++.-||..+++..+.-. ....+||.||+|.|..+..|.+... +|..||+++...+.|++.|.--.-.+
T Consensus 54 tis~P~~vA~m~~~L~~----------~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~n 121 (209)
T COG2518 54 TISAPHMVARMLQLLEL----------KPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYEN 121 (209)
T ss_pred eecCcHHHHHHHHHhCC----------CCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCc
Confidence 56667766666544321 4568999999999999999999874 89999999999999999882111234
Q ss_pred eeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHH
Q 004164 593 LKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFL 672 (771)
Q Consensus 593 ~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl 672 (771)
+.|+++||..-..+ ...||.|++-+-... .|..
T Consensus 122 V~v~~gDG~~G~~~---------------------------------~aPyD~I~Vtaaa~~-------vP~~------- 154 (209)
T COG2518 122 VTVRHGDGSKGWPE---------------------------------EAPYDRIIVTAAAPE-------VPEA------- 154 (209)
T ss_pred eEEEECCcccCCCC---------------------------------CCCcCEEEEeeccCC-------CCHH-------
Confidence 99999999875333 256999999653332 2433
Q ss_pred HHHHHccCCCcEEEEEec
Q 004164 673 LTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 673 ~~~~~~L~~~Gilv~Nl~ 690 (771)
+.+.|++||.+++-+-
T Consensus 155 --Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 155 --LLDQLKPGGRLVIPVG 170 (209)
T ss_pred --HHHhcccCCEEEEEEc
Confidence 3455999999998775
No 176
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.60 E-value=3e-07 Score=95.86 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFD 136 (771)
.+..+|||+|||+|..+..++.. +.++|+++|+++.+++.+++.+...+ .+++++.+|+.+. + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35789999999999998888775 34699999999999998877765544 4699999999764 1 1246899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|+.... ......++..+.++|+|||.+++-.
T Consensus 147 ~VfiDa~----------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9986321 1125688999999999999977754
No 177
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=6.7e-07 Score=101.50 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=104.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|+.+.++...++ ..+|+++|+++..++.+++.+ |+ ..++++.+|+..+-...
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v~~~~~Da~~l~~~~--------- 304 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSIEIKIADAERLTEYV--------- 304 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhhhhhhh---------
Confidence 446899999999999998888873 469999999999999999886 54 34899999998763221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~ 682 (771)
..+||.|++|+-.+. .|+..-.++. +..+.|..+.+.|+||
T Consensus 305 -----------------------~~~fD~Vl~DaPCsg--~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 305 -----------------------QDTFDRILVDAPCTS--LGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred -----------------------hccCCEEEECCCCCC--CccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999985442 2332222221 3467799999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccceEEe
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNHLFCL 714 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~ 714 (771)
|.+++-..+..++..+.++..+-+-++.....
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCCCcEEe
Confidence 99999998888888888888877666654433
No 178
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.60 E-value=3.9e-07 Score=96.35 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++..+...+|..+|++||+++.+++.|++.+ +++.++.+|+.++. .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~---~----------- 90 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ---P----------- 90 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC---C-----------
Confidence 3457899999999999999999888889999999999999999886 35889999987652 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+||+|+... .- ..+ + -...+|+.+.+.|+|||.|++.+..
T Consensus 91 --------------------~~~fD~v~~~~--~l--~~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 91 --------------------PQALDLIFANA--SL--QWL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------------CCCccEEEEcc--Ch--hhC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 24799999842 10 111 1 1368999999999999999997643
No 179
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.59 E-value=5.3e-07 Score=97.82 Aligned_cols=147 Identities=14% Similarity=0.197 Sum_probs=98.0
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|+++..+...+|..+|++||+++.++++|++..... ..++++++.+|..+.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~---------------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP---------------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC----------------
Confidence 6899999999999999999999999999999999999999987321 24679999999876431
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCC-CCCC-----CcCCcCcc--------cHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDS-SSGM-----TCPAADFV--------EGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~-~~g~-----s~pp~~f~--------~~~fl~~~~~~L~~~Gilv 686 (771)
..+||+|+.+.- .+.. ...+ ..|...+. -..+++.+.+.|+|||.++
T Consensus 199 ------------------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 199 ------------------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------------------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 146999998631 0000 0000 11222221 2578899999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEecC
Q 004164 687 VNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
+.+... .. .+.+.+.. . ...++....+.-.+++++..
T Consensus 261 ~E~g~~-~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 297 (307)
T PRK11805 261 VEVGNS-RV---HLEEAYPD-V-PFTWLEFENGGDGVFLLTRE 297 (307)
T ss_pred EEECcC-HH---HHHHHHhh-C-CCEEEEecCCCceEEEEEHH
Confidence 986432 22 23333332 1 12334555566667776644
No 180
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=5.9e-07 Score=88.32 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=77.8
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM 123 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~ 123 (771)
.|.|.....+...+.........-.+.+|+|+|||||.++...+-.|...|+++|+++.+++.+++...+...++.|.++
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~ 100 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVA 100 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEc
Confidence 33444555555545444422222456789999999999999998889889999999999999887776665678999999
Q ss_pred ecCCCCCCCCCccEEEecccccccc
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
|+.++. ..||.++.+-.+....
T Consensus 101 dv~~~~---~~~dtvimNPPFG~~~ 122 (198)
T COG2263 101 DVSDFR---GKFDTVIMNPPFGSQR 122 (198)
T ss_pred chhhcC---CccceEEECCCCcccc
Confidence 999874 6789999887776553
No 181
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.58 E-value=6.4e-07 Score=94.25 Aligned_cols=101 Identities=11% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCCcEEEEeccccHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHE--CMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~--~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..+.. ..|..++++||++|.|++.|++.+.- ....+++++.+|..++ .
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~----~--------- 122 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI----A--------- 122 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC----C---------
Confidence 457899999999998887777 35788999999999999999998732 2245899999997653 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc----cHHHHHHHHHccCCCcEEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV----EGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~----~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++-. .-+++ -..+++.+.+.|+|||.|++-
T Consensus 123 ----------------------~~~~D~vv~~~------------~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 123 ----------------------IENASMVVLNF------------TLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ----------------------CCCCCEEehhh------------HHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13488877521 11122 257999999999999999874
No 182
>PLN02366 spermidine synthase
Probab=98.57 E-value=5.1e-07 Score=97.62 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC--CCCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM--QFMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l--~~~~~sFDlV 138 (771)
+...+||+||||.|.++.++++.. ..+|+.+|+++.+++.+++.+.. ..++++++.+|+... ..++++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 356899999999999999999884 46899999999999988776532 246899999997653 2235789999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+....-...+.. .-.-..+++.+++.|+|||+++..
T Consensus 170 i~D~~dp~~~~~---~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQ---ELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchh---hhhHHHHHHHHHHhcCCCcEEEEC
Confidence 975432221110 001357899999999999998764
No 183
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=5.1e-08 Score=97.36 Aligned_cols=112 Identities=19% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+....++|||||-|.+...|...+..+++-+|.|-.|++.++. .....-.+.+.+.|-+.++|.+++||+|++...+||
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 3567999999999999999999998899999999999986643 222233567888999999999999999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
..+.. ..+.+++..|||+|.|+..-++.+.+.+
T Consensus 150 ~NdLP-------g~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 150 TNDLP-------GSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred hccCc-------hHHHHHHHhcCCCccchhHHhccccHHH
Confidence 98755 7899999999999999998888665443
No 184
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.56 E-value=4.7e-07 Score=95.74 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=81.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||+||+|+|.++..|.... .+|++||+++.+++.|++...- ...++++++.+|..+.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------------ 109 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------------ 109 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------------
Confidence 45799999999999999888863 5899999999999999988631 12467999999998753221
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
...||+|++.. ....+.-| ..+|+.+.+.|+|||.+++-.+..+.
T Consensus 110 --------------------~~~fD~V~~~~----vl~~~~~~------~~~l~~~~~~LkpgG~l~i~~~n~~~ 154 (255)
T PRK11036 110 --------------------ETPVDLILFHA----VLEWVADP------KSVLQTLWSVLRPGGALSLMFYNANG 154 (255)
T ss_pred --------------------CCCCCEEEehh----HHHhhCCH------HHHHHHHHHHcCCCeEEEEEEECccH
Confidence 25799999731 10111111 57899999999999999876555443
No 185
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.56 E-value=3.1e-07 Score=94.44 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+..+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-------------- 141 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-------------- 141 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------------
Confidence 457899999999999988888764 46999999999999999998732222579999999865311
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|+++.... +..+.+.+.|+|||.|++.+
T Consensus 142 -------------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 142 -------------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred -------------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEE
Confidence 125699999964321 12245667899999999876
No 186
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.56 E-value=6.3e-07 Score=102.33 Aligned_cols=132 Identities=9% Similarity=0.117 Sum_probs=89.2
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC---
Q 004164 53 LRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM--- 128 (771)
Q Consensus 53 l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l--- 128 (771)
+...+.+++.. .++.+|||+|||+|.++..|+..+ .+|+++|+|+.+++.+++.+...+ .+++|+++|+.+.
T Consensus 285 l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 285 MVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 33344455542 567899999999999999999886 499999999999998876654433 4799999998653
Q ss_pred -CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 129 -QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 129 -~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
++.+++||+|+..-.-.. ....+..+.+ ++|++.++++. ....+...+......+|.+..
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g----------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~~L~~~gY~l~~ 421 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG----------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAGVLVEAGYRLKR 421 (443)
T ss_pred hhhhcCCCCEEEECcCCcC----------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHHHHhhCCcEEEE
Confidence 344578999986432111 2345555554 68877766554 334444444444455676653
No 187
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.56 E-value=8e-07 Score=98.13 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..+.+|.||+|.|.....+....|...+++||+++.+++.|.+......-++++++.+|+..++....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~------------ 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP------------ 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC------------
Confidence 45689999999999999999999999999999999999998877632222469999999998765443
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMV 700 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v 700 (771)
+..+|.|++- -+|+...- +...++.+.|++.+++.|+|||.+.+. +.+..+...+
T Consensus 190 -------------------~~s~D~I~ln--FPdPW~Kk--rHRRlv~~~fL~e~~RvLkpGG~l~l~--TD~~~y~~~~ 244 (390)
T PRK14121 190 -------------------SNSVEKIFVH--FPVPWDKK--PHRRVISEDFLNEALRVLKPGGTLELR--TDSELYFEFS 244 (390)
T ss_pred -------------------CCceeEEEEe--CCCCcccc--chhhccHHHHHHHHHHHcCCCcEEEEE--EECHHHHHHH
Confidence 3679999983 34442111 234577899999999999999999865 3556666666
Q ss_pred HHHHHHh
Q 004164 701 ISRMKMV 707 (771)
Q Consensus 701 ~~~l~~v 707 (771)
+..+.+.
T Consensus 245 ~e~~~~~ 251 (390)
T PRK14121 245 LELFLKL 251 (390)
T ss_pred HHHHHhC
Confidence 6666554
No 188
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.56 E-value=2.5e-07 Score=95.25 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=77.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++.+|....+ ..+|++||++|.+++.|++.+.-..-++++++.+|+.+....
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~------------ 143 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP------------ 143 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc------------
Confidence 3457899999999999999988865 357999999999999999987322225699999999764211
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+++.... ...+.+.+.|+|||.|++.+.
T Consensus 144 ---------------------~~~fD~Ii~~~~~~----------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 144 ---------------------LAPYDRIYVTAAGP----------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ---------------------cCCCCEEEEcCCcc----------------cccHHHHHhcCcCcEEEEEEc
Confidence 24699999964211 123457788999999999764
No 189
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.55 E-value=1.9e-07 Score=94.36 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCC-cEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSD-MRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~-i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
...+.||.|||-|+.|..+.-.-+.+|-.+|..+.+++.|++.......+ ..+.+..+.++..+.++||+||+-.++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 46799999999999999887666789999999999999998766442333 67888999888666689999999999999
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+.+.+ +-.+|+.+...|+|||.+++-+.
T Consensus 135 LTD~d-----lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 135 LTDED-----LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp S-HHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHH-----HHHHHHHHHHhCcCCcEEEEEec
Confidence 98876 88999999999999999998654
No 190
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.54 E-value=4.8e-07 Score=92.35 Aligned_cols=111 Identities=12% Similarity=0.196 Sum_probs=77.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|||.|+..++... ..|+++|+++..+++|+.|--- ..-.+........+ +.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e-~gv~i~y~~~~~ed----l~------------ 119 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE-SGVNIDYRQATVED----LA------------ 119 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh-ccccccchhhhHHH----HH------------
Confidence 35789999999999999999886 7999999999999999988621 00112233232222 22
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
..+++||+|++ -+.-.-+.-| ..|++.|.++++|||++++-.+.|+...+
T Consensus 120 -----------------~~~~~FDvV~c----mEVlEHv~dp------~~~~~~c~~lvkP~G~lf~STinrt~ka~ 169 (243)
T COG2227 120 -----------------SAGGQFDVVTC----MEVLEHVPDP------ESFLRACAKLVKPGGILFLSTINRTLKAY 169 (243)
T ss_pred -----------------hcCCCccEEEE----hhHHHccCCH------HHHHHHHHHHcCCCcEEEEeccccCHHHH
Confidence 01368999986 2211111111 56999999999999999988887775543
No 191
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.54 E-value=1.5e-06 Score=93.49 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=98.2
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+||++|+|+|.++..+...+|..+|++||+++.++++|++.... ...++++++.+|..+.+ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~------------- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---A------------- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---c-------------
Confidence 689999999999999999999988999999999999999998621 12357999999976532 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC-----CcCCcCc--------ccHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM-----TCPAADF--------VEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~-----s~pp~~f--------~~~~fl~~~~~~L~~~Gilv 686 (771)
..+||+|+.+.---... ..+ ..|...+ .-..++..+.+.|+|||+++
T Consensus 180 ------------------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~ 241 (284)
T TIGR00536 180 ------------------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLV 241 (284)
T ss_pred ------------------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 13699999853110000 000 1122222 23568888999999999999
Q ss_pred EEeccCChhHHHHHHHHHHH--hccceEEeeecCCccEEEEEe
Q 004164 687 VNLVSRSQATKDMVISRMKM--VFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~--vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
+.+...... .+.+.+.. -|..+-.++--.+...++++.
T Consensus 242 ~e~g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 242 CEIGNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred EEECccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 988543332 33444442 355554444334556777764
No 192
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.53 E-value=2.4e-06 Score=95.03 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=97.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|+|.++..+....|..+|++||+|+.++++|++..... ..+++++.+|..+.. ..
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~--l~------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTD--MP------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccc--cc-------------
Confidence 35899999999999999998888899999999999999999987321 237999999975531 00
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC-CCCCCCC------cCCcCcc--------cHHHHHHHHHccCCCcEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSP-DSSSGMT------CPAADFV--------EGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~-d~~~g~s------~pp~~f~--------~~~fl~~~~~~L~~~Gilv 686 (771)
...+||+|+.+.--- .....+. -|...+. -..+++.+.+.|+|+|.++
T Consensus 316 -----------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 316 -----------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred -----------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 014699999954110 0000000 0111121 2366777788999999998
Q ss_pred EEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEec
Q 004164 687 VNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~ 728 (771)
+-+-.. ..+.+.+.+.+. |..+-..+--.+..+++++..
T Consensus 379 lEiG~~---Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 379 LEHGFD---QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred EEECcc---HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 755322 233455555553 555544443445567777754
No 193
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.53 E-value=9.8e-07 Score=93.65 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+||+|+|.++..|...+ |..+|++||+++.|++.|++..... ..++++++.+|+.+. .
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l----p------- 140 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL----P------- 140 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC----C-------
Confidence 345789999999999998888775 5569999999999999998775321 135799999997653 1
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+..||+|++-.. ...+ | --..+|+.+.+.|+|||.|++--+...
T Consensus 141 ----------------------~~~~sfD~V~~~~~----l~~~--~----d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 141 ----------------------FDDCYFDAITMGYG----LRNV--V----DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred ----------------------CCCCCEeEEEEecc----cccC--C----CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 12367999987211 0111 1 126799999999999999887655543
No 194
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.53 E-value=4.2e-07 Score=98.91 Aligned_cols=108 Identities=16% Similarity=0.194 Sum_probs=81.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..|... +.+|++||+++.+++.|++++... ...+++++.+|+.++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc-------------
Confidence 3458999999999998888764 468999999999999999987542 235799999998665211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|+. .+...-+. -...||+.+++.|+|||.+++..+.+.
T Consensus 196 --------------------~~~FD~Vi~----~~vLeHv~------d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 --------------------GRKFDAVLS----LEVIEHVA------NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------------cCCCCEEEE----hhHHHhcC------CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 257999997 11111111 126899999999999999999876654
No 195
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.53 E-value=3.3e-07 Score=98.08 Aligned_cols=104 Identities=18% Similarity=0.157 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
-.+..|||+|||+|.++..-+++|..+|+++|.|..+ +.+.+.....+ ..++++.+.++++.+|.++.|+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 3578999999999999999999999999999999866 55655544443 34899999999987778999999999888
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+++.-. ..+..+|-.=-+.|+|||.++
T Consensus 138 y~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 877521 124455555568999999865
No 196
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.53 E-value=6.4e-07 Score=91.59 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||+||+|+|.++..+.+..+ ..+|++||+++.+++.|++.+.- ...++++++.+|+.+.+..
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------------ 139 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------------ 139 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------------
Confidence 346899999999999988888764 45899999999999999987731 1235799999999764221
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+++.... .+...+.+.|+|||.|++.+.
T Consensus 140 ---------------------~~~fD~Ii~~~~~~----------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 140 ---------------------HAPFDAIIVTAAAS----------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ---------------------CCCccEEEEccCcc----------------hhhHHHHHhcCcCcEEEEEEc
Confidence 24799999964221 122457788999999998763
No 197
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.52 E-value=7.4e-07 Score=93.53 Aligned_cols=116 Identities=12% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|+|.++..+...+|..+++++|+++.+++.|++.+....-++++++.+|+.+.+ .
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~------------ 151 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---P------------ 151 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---c------------
Confidence 3468999999999999999999998899999999999999998863222246999999987632 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCC--CCC------cCCcCc--------ccHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSS--GMT------CPAADF--------VEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~--g~s------~pp~~f--------~~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.--..... .+. .|...+ .-..+++.+.+.|+|||.
T Consensus 152 -------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 152 -------------------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred -------------------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 257999998531100000 000 000000 114788999999999999
Q ss_pred EEEEec
Q 004164 685 FIVNLV 690 (771)
Q Consensus 685 lv~Nl~ 690 (771)
+++...
T Consensus 213 ~~~~~~ 218 (251)
T TIGR03534 213 LLLEIG 218 (251)
T ss_pred EEEEEC
Confidence 999864
No 198
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.52 E-value=2e-06 Score=89.97 Aligned_cols=105 Identities=12% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhC--CCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM--PFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~--p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.+...+...+ |..++++||+++.|++.|++.+. .....+++++.+|..++ .
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~----~--------- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV----E--------- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC----C---------
Confidence 45689999999999988888764 67899999999999999999863 22345799999998764 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+|+|++.. . ..- +++.. -..+|+.+.+.|+|||.|++-
T Consensus 120 ----------------------~~~~d~v~~~~--~--l~~--~~~~~--~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 120 ----------------------IKNASMVILNF--T--LQF--LPPED--RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred ----------------------CCCCCEEeeec--c--hhh--CCHHH--HHHHHHHHHHhcCCCeEEEEe
Confidence 12478776521 1 000 11111 257999999999999999976
No 199
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.52 E-value=1.1e-06 Score=92.79 Aligned_cols=128 Identities=17% Similarity=0.179 Sum_probs=88.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||++|+|.|.++..+...+|..+|++||+||.+++.|++.+.. ..++++.+|..+++....
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---~~~~~~~~D~~~~l~~~~------------- 150 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---AGGTVHEGDLYDALPTAL------------- 150 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCEEEEeechhhcchhc-------------
Confidence 4589999999999999999888888999999999999999998743 125789999877654321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc--------Cc--------ccHHHHHHHHHccCCCcEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--------DF--------VEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~--------~f--------~~~~fl~~~~~~L~~~Gil 685 (771)
..+||+|++|.---.....-..+|. .+ +-..++..+.+.|+|+|.+
T Consensus 151 ------------------~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 151 ------------------RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred ------------------CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 1469999997521100000000111 11 1257888889999999999
Q ss_pred EEEeccCChhHHHHHHHHHHH
Q 004164 686 IVNLVSRSQATKDMVISRMKM 706 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~ 706 (771)
++-.... ....+...|++
T Consensus 213 ~l~~~~~---~~~~v~~~l~~ 230 (251)
T TIGR03704 213 LVETSER---QAPLAVEAFAR 230 (251)
T ss_pred EEEECcc---hHHHHHHHHHH
Confidence 9765322 23456666655
No 200
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.51 E-value=1.7e-06 Score=88.63 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=97.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|..+..+.+..+ ...|++||++|. . . .+.++++.+|.... +.++..
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~-------~---~~~v~~i~~D~~~~~~~~~i~~-------- 111 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D-------P---IVGVDFLQGDFRDELVLKALLE-------- 111 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c-------C---CCCcEEEecCCCChHHHHHHHH--------
Confidence 346899999999999998888764 469999999992 1 1 24589999997753 332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-----ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-----VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
......||+|+.|....- .|. |..+. +...+|+.+.+.|+|||.|++-++..
T Consensus 112 -------------------~~~~~~~D~V~S~~~~~~--~g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 112 -------------------RVGDSKVQVVMSDMAPNM--SGT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred -------------------HhCCCCCCEEecCCCCcc--CCC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 001367999999763221 111 11110 12578999999999999999976543
Q ss_pred ChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
. ....++..++..|..+..++.. +.....++|.+
T Consensus 169 ~--~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~ 206 (209)
T PRK11188 169 E--GFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 206 (209)
T ss_pred c--CHHHHHHHHHhCceEEEEECCccccccCceeEEEeec
Confidence 2 2345789999999998888753 33455666654
No 201
>PRK04266 fibrillarin; Provisional
Probab=98.51 E-value=2e-06 Score=89.19 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=94.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||++|+|+|.++..|....+..+|.+||+++.|++.+.+...- .+++.++.+|+..-.....
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~----------- 137 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAH----------- 137 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhh-----------
Confidence 345689999999999999999988756899999999988866555421 2468888898753100000
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC------
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS------ 693 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~------ 693 (771)
-..+||+|+.|+..++ ....+++.+++.|+|||.|++.+..+.
T Consensus 138 -------------------l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~ 186 (226)
T PRK04266 138 -------------------VVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD 186 (226)
T ss_pred -------------------ccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCC
Confidence 0145999998753221 014468999999999999998644321
Q ss_pred -hhHHHHHHHHHHHh-ccceEEeeecC--CccEEEEE
Q 004164 694 -QATKDMVISRMKMV-FNHLFCLQLEE--DVNLVLFG 726 (771)
Q Consensus 694 -~~~~~~v~~~l~~v-F~~v~~~~~~~--~~N~Vl~a 726 (771)
....+..++.++++ |..+....... ..+..+++
T Consensus 187 ~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~ 223 (226)
T PRK04266 187 PKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVA 223 (226)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEE
Confidence 12233455777665 77666555432 23444544
No 202
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.50 E-value=1.6e-06 Score=86.66 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=94.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++.+||.+|+|.|.++..+....+ +|++||++|.+++.|++.+... .-+++++.+|..+..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~---------------- 79 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV---------------- 79 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------------
Confidence 346899999999999998888765 8999999999999999987532 235788888865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCC-----------cCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPA-----------ADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp-----------~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.+.--.........++ ..-.-..|++.+.+.|+|||.+++..
T Consensus 80 -------------------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 -------------------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred -------------------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 146999998531100000000000 01123678999999999999999876
Q ss_pred ccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEe
Q 004164 690 VSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
.+... ...++..|++.-=++-......-.++.+++-
T Consensus 141 ~~~~~--~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 141 SSLNG--EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred eccCC--hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 44332 2345666665432333333334445666554
No 203
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=1.1e-06 Score=100.27 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+..+.... +..+|++||+++.+++.+++.+ |+ ..++++.+|+.++.....
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~~~~~-------- 318 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNIETKALDARKVHEKFA-------- 318 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCCcccccchhc--------
Confidence 34689999999999998888876 5679999999999999999876 44 249999999987633221
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC-CcCCcC-c------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM-TCPAAD-F------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~-s~pp~~-f------------~~~~fl~~~~~~L~~~ 682 (771)
..||+|++|...+. .|+ ...|.. + +..++|+.+.+.|+||
T Consensus 319 ------------------------~~fD~Vl~D~Pcsg--~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 319 ------------------------EKFDKILVDAPCSG--LGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ------------------------ccCCEEEEcCCCCC--CeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46999999974321 121 111111 1 2357899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhcc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
|.+++...+-..+..+.++..+.+-.+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 999998877766666667766555444
No 204
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=7.8e-07 Score=94.90 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
.+.+||+||||+|.++..+.+.+ ..+++++|+++.+++.+++.+.. ..++++++.+|..+. ....++||+|+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888875 56899999999999988765422 235788888887553 222478999997
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+...... . .-....+++.+++.|+|||++++..
T Consensus 152 D~~~~~~~~-~--~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPA-E--TLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcc-c--chhHHHHHHHHHHHhCCCcEEEEcC
Confidence 654221111 1 0013578899999999999999874
No 205
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.49 E-value=4.1e-07 Score=79.74 Aligned_cols=94 Identities=15% Similarity=0.237 Sum_probs=71.2
Q ss_pred EEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEIT 625 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (771)
|+||+|.|..+..|... +..+++++|+++.+++.|++.+. ...+.+..+|..++ .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l--~------------------- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL--P------------------- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS--S-------------------
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC--c-------------------
Confidence 78999999999999999 77899999999999999999985 35566888886554 1
Q ss_pred cCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-ccHHHHHHHHHccCCCcEEEE
Q 004164 626 SNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 626 ~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~~~fl~~~~~~L~~~Gilv~ 687 (771)
.++..||+|+.- .. -..+ --..+++.+++.|+|||.+++
T Consensus 56 ------------~~~~sfD~v~~~--~~---------~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 56 ------------FPDNSFDVVFSN--SV---------LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ------------S-TT-EEEEEEE--SH---------GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------------cccccccccccc--cc---------eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 124789999871 11 0111 236799999999999999985
No 206
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.48 E-value=1.2e-06 Score=101.22 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||+||+|+|+++..+...+|..+|++||++|.++++|++.... ..+++++++.+|..+.+.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------------- 203 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------------- 203 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---------------
Confidence 4689999999999999998888989999999999999999988621 124689999999865421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC--CCC------CcCCcCcc--------cHHHHHHHHHccCCCcE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS--SGM------TCPAADFV--------EGSFLLTVKDALSEQGL 684 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~--~g~------s~pp~~f~--------~~~fl~~~~~~L~~~Gi 684 (771)
..+||+|+.+.---... ..+ .-|..+++ -..+++.+.+.|+|||.
T Consensus 204 -------------------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 204 -------------------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred -------------------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 14699999853100000 000 00122222 23466788889999999
Q ss_pred EEEEeccCChhHHHHHHHHHHHh-ccceEEeeecCCccEEEEEecCC
Q 004164 685 FIVNLVSRSQATKDMVISRMKMV-FNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 685 lv~Nl~~~~~~~~~~v~~~l~~v-F~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
+++-+- .+. .+.+.+.+.+. |..+..++--.+...++++....
T Consensus 265 l~lEig-~~q--~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~ 308 (506)
T PRK01544 265 IILEIG-FKQ--EEAVTQIFLDHGYNIESVYKDLQGHSRVILISPIN 308 (506)
T ss_pred EEEEEC-Cch--HHHHHHHHHhcCCCceEEEecCCCCceEEEecccc
Confidence 998653 222 23444555443 44444444344567888887766
No 207
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.47 E-value=1e-06 Score=91.35 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|-++..+.+..+..+|+++|+++.|+++|++...=..-..++++++||.+-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L----------------- 113 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL----------------- 113 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC-----------------
Confidence 578999999999999999999998889999999999999999998421112299999999774
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
+.++..||++.+.- ....+. --+..|+.+.+.|+|||.+++.=.+.
T Consensus 114 ----------------Pf~D~sFD~vt~~f----glrnv~------d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 ----------------PFPDNSFDAVTISF----GLRNVT------DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ----------------CCCCCccCEEEeee----hhhcCC------CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 12357899998832 111111 12779999999999999888765444
No 208
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.47 E-value=1.5e-06 Score=98.70 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=98.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||++|+|.|+.+..+....+..+|+++|+++.+++.+++.+ |+. .++.++.+|+.......
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~~---------- 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQWA---------- 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeccccccccccc----------
Confidence 446899999999999999999887679999999999999998886 542 23444556654321000
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCc-CCcCc-------------ccHHHHHHHHHccCCCc
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTC-PAADF-------------VEGSFLLTVKDALSEQG 683 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~-pp~~f-------------~~~~fl~~~~~~L~~~G 683 (771)
....||.|++|+-.+. .|+.. .|... +..++|..+.+.|+|||
T Consensus 306 ---------------------~~~~fD~VllDaPcSg--~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG 362 (426)
T TIGR00563 306 ---------------------ENEQFDRILLDAPCSA--TGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGG 362 (426)
T ss_pred ---------------------cccccCEEEEcCCCCC--CcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1257999999974432 23211 12111 14679999999999999
Q ss_pred EEEEEeccCChhHHHHHHHHHHHhccce
Q 004164 684 LFIVNLVSRSQATKDMVISRMKMVFNHL 711 (771)
Q Consensus 684 ilv~Nl~~~~~~~~~~v~~~l~~vF~~v 711 (771)
.|++..++-.++..+.++..+.+-++..
T Consensus 363 ~lvystcs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 363 TLVYATCSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred EEEEEeCCCChhhCHHHHHHHHHhCCCC
Confidence 9999998888887888888887777653
No 209
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=6e-07 Score=90.84 Aligned_cols=106 Identities=23% Similarity=0.298 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcE---------------------------
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMR--------------------------- 119 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~--------------------------- 119 (771)
.+..+|||||-+|.++..+++. |...|.|+||.+..|+.|++.... .....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~-~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF-PCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc-cccccccccCCCcccccccccccccccccccc
Confidence 4678999999999999999998 777899999999999988766532 11111
Q ss_pred -----------------EEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 120 -----------------WRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 120 -----------------~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
+...|+. .+....||+|+|-..--|+. ...+.+++..+|..+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111222 23457899999765444332 2223445999999999999999998875
No 210
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=3e-06 Score=91.28 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=95.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEe-ecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVM-DMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~-D~~~ 127 (771)
.+.+...+.++... .++..|||.=||||....+..-.|. +++|+|++..|+.-++..+..-+ ....+..+ |+++
T Consensus 182 ~P~lAR~mVNLa~v---~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 182 DPRLARAMVNLARV---KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred CHHHHHHHHHHhcc---ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44566667777655 6889999999999999988877788 99999999999987755443222 34545555 9999
Q ss_pred CCCCCCCccEEEeccccccccCcccc--hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQFMDETFDVILDKGGLDALMEPELG--HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~~~~~sFDlVi~~~~l~~l~~~~~~--~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|+++.+||.|+.--.-.--...... ..++.++|+.++++|++||++++...-
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~ 312 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR 312 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 99998899999964332221111111 245889999999999999999998763
No 211
>PRK01581 speE spermidine synthase; Validated
Probab=98.47 E-value=6.1e-07 Score=97.76 Aligned_cols=110 Identities=18% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHH--h------hcCCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--N------VRDRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~--~------~~~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
...+||++|||.|..+..+.+.+ ..+|++||+++.+++.+++. . .-..++++++.+|+.+. ....++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45799999999999998888874 46999999999999977641 1 11347899999999874 334578999
Q ss_pred EEeccccccccCcccchHH-HHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|+.... +..... .... -..+++.+++.|+|||+|++..-+
T Consensus 230 IIvDl~-DP~~~~--~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 230 IIIDFP-DPATEL--LSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred EEEcCC-Cccccc--hhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 997632 111000 0011 357899999999999999887543
No 212
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.46 E-value=2.4e-06 Score=93.98 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=96.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||+||+|.|.++..+....|..+|++||+++.+++.|++.+... .-..+++.+|+...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n-~l~~~~~~~D~~~~~----------------- 258 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN-GLEGEVFASNVFSDI----------------- 258 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCEEEEccccccc-----------------
Confidence 34799999999999999999999889999999999999999887421 123467777775421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
..+||+|+.+. +-. .|+. ...-....|++.+.+.|+|||.|++-. .+.-. +.
T Consensus 259 ------------------~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~--- 310 (342)
T PRK09489 259 ------------------KGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP--- 310 (342)
T ss_pred ------------------CCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---
Confidence 25699999942 111 0110 000123789999999999999886522 23222 22
Q ss_pred HHHHHhccceEEeeecCCccEEEEEecCC
Q 004164 702 SRMKMVFNHLFCLQLEEDVNLVLFGLSSE 730 (771)
Q Consensus 702 ~~l~~vF~~v~~~~~~~~~N~Vl~a~~~~ 730 (771)
..+.+.|.++-.+. .+..=.|+-|.+..
T Consensus 311 ~~l~~~Fg~~~~la-~~~~f~v~~a~~~~ 338 (342)
T PRK09489 311 DLLDETFGSHEVLA-QTGRFKVYRAIMTR 338 (342)
T ss_pred HHHHHHcCCeEEEE-eCCCEEEEEEEccC
Confidence 34556898875554 44445667666543
No 213
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.46 E-value=6.8e-07 Score=90.55 Aligned_cols=116 Identities=20% Similarity=0.234 Sum_probs=82.9
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-CCCcEEEEeecCCC---CCCCCCccEEEeccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-RSDMRWRVMDMTSM---QFMDETFDVILDKGG 143 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-~~~i~~~~~D~~~l---~~~~~sFDlVi~~~~ 143 (771)
...+||||||.|.+...+|.. +-.+++|+|++...+..+.++.... ..|+.++++|+..+ -++++++|-|+....
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 348999999999999999987 4469999999999999888777554 47999999999883 256789999986443
Q ss_pred cccccCcccc-hHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 144 LDALMEPELG-HKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 144 l~~l~~~~~~-~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
=-|....... .-.-..++..++++|+|||.+.+.|-..+..
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~ 139 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYA 139 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHH
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence 2221110000 0115689999999999999999998765443
No 214
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.5e-06 Score=89.50 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=92.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
..+..++.. .|+.+|||.|.|+|.++..|+.. | .++|+..|+.+...+.|++.+...+ .++++...|+.+.-+
T Consensus 84 ~~I~~~~gi---~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 84 GYIVARLGI---SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHcCC---CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 345566554 79999999999999999999975 4 4899999999999999987776533 348999999999766
Q ss_pred CCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhc
Q 004164 131 MDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLG 186 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~ 186 (771)
++ .||.|+. + ++++- +++..+...|+|||.++|...+-+.+.+
T Consensus 161 ~~-~vDav~L----D-mp~PW-------~~le~~~~~Lkpgg~~~~y~P~veQv~k 203 (256)
T COG2519 161 EE-DVDAVFL----D-LPDPW-------NVLEHVSDALKPGGVVVVYSPTVEQVEK 203 (256)
T ss_pred cc-ccCEEEE----c-CCChH-------HHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence 65 8999984 3 34444 8899999999999999998876555443
No 215
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.46 E-value=5.3e-07 Score=81.14 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=69.6
Q ss_pred EEEEeccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 545 AVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~---p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
||+||+|+|...+.+...+ |..++++||+|+.+++.|++++.- ...+++++++|..++- ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~~-------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-FS-------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-HH--------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-cc--------------
Confidence 7999999999999999887 447999999999999999999832 2237899999998752 21
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc---cHHHHHHHHHccCCCc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV---EGSFLLTVKDALSEQG 683 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~---~~~fl~~~~~~L~~~G 683 (771)
..+||+|+. . +. ....|. -..+|+.+.++|+|||
T Consensus 65 ------------------~~~~D~v~~----~----~~--~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 ------------------DGKFDLVVC----S----GL--SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ------------------SSSEEEEEE---------TT--GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ------------------CCCeeEEEE----c----CC--ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 258999998 1 00 012222 2678999999999998
No 216
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.45 E-value=4.8e-07 Score=91.50 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCcchhH----HHHHhc-----C-CCeEEEEcCCHHHHHHHHHHh------h-------------cC----
Q 004164 68 PPPQILVPGCGNSRLS----EHLYDA-----G-FHGITNVDFSKVVISDMLRRN------V-------------RD---- 114 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls----~~La~~-----g-~~~V~~vDiS~~~i~~~~~~~------~-------------~~---- 114 (771)
+..+|+..||++|.-. ..|.+. + .-+|+|+|+|+.+|+.|++-. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999654 333341 2 138999999999999886421 0 00
Q ss_pred ------CCCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 115 ------RSDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 115 ------~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...++|...|+.+.+...+.||+|+|..+|-++.... ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----HHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----HHHHHHHHHHHcCCCCEEEEec
Confidence 1468999999999444568999999999999986544 7899999999999999998853
No 217
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=2.1e-06 Score=98.17 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|..+.++....+ ..+|++||+++.+++.+++.+ |+ ++++++.+|+..+. .
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~---~-------- 315 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS---P-------- 315 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc---c--------
Confidence 346899999999999888887764 358999999999999999887 44 36899999997752 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC---c-----------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD---F-----------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~---f-----------~~~~fl~~~~~~L~~~ 682 (771)
...||+|++|+-.+. .|+.+-.+. . ....+|..+.+.|+||
T Consensus 316 -----------------------~~~fD~Vl~D~Pcsg--~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 316 -----------------------EEQPDAILLDAPCTG--TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred -----------------------CCCCCEEEEcCCCCC--cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 246999999874331 222211111 1 1346899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
|.+++...+-.++..+.++..+.+..+.
T Consensus 371 G~lvystcs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 371 GVLVYATCSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred cEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999999888888878888877766554
No 218
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.45 E-value=1.3e-06 Score=90.52 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|.|.++..+...+|..++++||+++.+++.|++.+. ++++++.+|..+..
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~---------------- 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP---------------- 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC----------------
Confidence 4578999999999999999999998899999999999999999875 37888889876531
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|+....-. .. . -...+|+.+++.|+|||.+++.....
T Consensus 94 -----------------~~~~~fD~vi~~~~l~----~~----~--~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 94 -----------------LEDSSFDLIVSNLALQ----WC----D--DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -----------------CCCCceeEEEEhhhhh----hc----c--CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 0135799999842111 00 0 12679999999999999999876544
No 219
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.44 E-value=9.6e-07 Score=94.07 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....+||+||+|.|+++.++.+.+ +++|++|.++++-.+.|++.. |+ .++++|..+|-.++ .
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl--~~~v~v~~~D~~~~----~-------- 125 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL--EDRVEVRLQDYRDL----P-------- 125 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS--SSTEEEEES-GGG--------------
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC--CCceEEEEeecccc----C--------
Confidence 456799999999999999999998 579999999999999999887 44 57899999997654 2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.+||.|+. .+|...-..=.-+.|++.+.+.|+|||.+++..++....
T Consensus 126 ------------------------~~fD~IvS--------i~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 126 ------------------------GKFDRIVS--------IEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp -------------------------S-SEEEE--------ESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred ------------------------CCCCEEEE--------EechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 47999885 122111111123789999999999999999987765443
No 220
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.44 E-value=2.2e-06 Score=86.96 Aligned_cols=120 Identities=11% Similarity=0.101 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC-
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM- 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l- 128 (771)
..+.+.+..++.. ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++.+...+ .+++++++|+.+.
T Consensus 38 d~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 38 DRVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 3444445555532 12567999999999999987666666799999999999987765543333 4689999998763
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHH--ccccCeEEEEEEcC
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKR--LLKSGGKFVCLTLA 180 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~r--vLkpGG~~ii~~~~ 180 (771)
+...++||+|+..-.... . ....++..+.. +|+|+|.+++....
T Consensus 116 ~~~~~~fDlV~~DPPy~~--g------~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK--G------LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred hhcCCCceEEEECCCCCC--C------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 222457999997665321 1 13455565555 47899988877654
No 221
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.43 E-value=1.3e-06 Score=86.91 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCCC----CCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSMQ----FMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l~----~~~~sFDl 137 (771)
.++.+|||+|||+|..+..++.. +..+|+..|.++ .++.++...... ..++.+...|..+.. .+..+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46789999999999999999998 667999999999 888775554433 256888888775521 34568999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|+...++|.-. ....++.-+.++|+++|.+++..-
T Consensus 123 IlasDv~Y~~~-------~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLYDEE-------LFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S-GG-------GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccchHH-------HHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999632 267999999999999988655543
No 222
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.42 E-value=1.5e-06 Score=94.72 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDlVi~~ 141 (771)
++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++.....+ .+++|+++|+.++.. ..+.||+|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 468999999999999999999874 99999999999998876664444 479999999987532 23579999975
No 223
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.42 E-value=1.7e-06 Score=92.02 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++..|...+ ..+|++||+++.+++.|++.+.. .++++++.+|..+. .
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~----~----------- 112 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK----D----------- 112 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC----C-----------
Confidence 345789999999999988887765 45999999999999999998753 46799999987531 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+..||+|+. ++... + +... -..+|+.+.+.|+|||.|++.-+.
T Consensus 113 ------------------~~~~~FD~V~s~~~l~h-----~--~~~d--~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 ------------------FPENTFDMIYSRDAILH-----L--SYAD--KKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred ------------------CCCCCeEEEEEhhhHHh-----C--CHHH--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11367999997 32111 0 0111 267999999999999999987553
No 224
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.41 E-value=2e-06 Score=91.88 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=79.6
Q ss_pred CCeEEEEcCCcchhH----HHHHhc-C----CCeEEEEcCCHHHHHHHHHHh------------------hc--------
Q 004164 69 PPQILVPGCGNSRLS----EHLYDA-G----FHGITNVDFSKVVISDMLRRN------------------VR-------- 113 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls----~~La~~-g----~~~V~~vDiS~~~i~~~~~~~------------------~~-------- 113 (771)
..+|+..||+||.-. ..+.+. + .-+|+|+|+|+.+|+.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999654 333332 1 137999999999999886531 00
Q ss_pred ------CCCCcEEEEeecCCCCCC-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 114 ------DRSDMRWRVMDMTSMQFM-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 114 ------~~~~i~~~~~D~~~l~~~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-...+.|...|+.+.+++ .+.||+|+|.+++.++.... ..+++..+++.|+|||+|++-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~-----~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTT-----QERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHH-----HHHHHHHHHHHhCCCcEEEEeC
Confidence 013578999999886543 57899999999999886544 7899999999999999877653
No 225
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.41 E-value=5.1e-06 Score=83.64 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=92.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH--HHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF--VREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~--l~~~~~~~~~~~~ 616 (771)
....+||+||+|+|.++..+...+ +..+|++||++|.+ .. +.++++.+|..+. +.....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~~---~~i~~~~~d~~~~~~~~~l~~------- 92 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------PI---ENVDFIRGDFTDEEVLNKIRE------- 92 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------cC---CCceEEEeeCCChhHHHHHHH-------
Confidence 345689999999999988888776 45689999999964 11 3578888886532 111110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc----ccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF----VEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f----~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....+||+|+.|... +..|..+. ... ....++..+.+.|+|||.+++.....
T Consensus 93 --------------------~~~~~~~D~V~~~~~~--~~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 93 --------------------RVGDDKVDVVMSDAAP--NISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred --------------------HhCCCCccEEEcCCCC--CCCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 0013579999997521 11111000 001 12578999999999999999976432
Q ss_pred ChhHHHHHHHHHHHhccceEEeee--cCCcc--EEEEEe
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQL--EEDVN--LVLFGL 727 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~--~~~~N--~Vl~a~ 727 (771)
.....++..++..|..+...+. ..+.| .+++|.
T Consensus 150 --~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 150 --EEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred --ccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 2234578888888976666553 33444 466664
No 226
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.40 E-value=3.2e-06 Score=91.07 Aligned_cols=119 Identities=12% Similarity=0.177 Sum_probs=84.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||++|+|+|.++..+... +..+|++||+||.+++.|++.+... -.+++.++.+|... ..
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~----~~----------- 222 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ----PI----------- 222 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc----cc-----------
Confidence 3478999999999999887765 4458999999999999999987432 13456666665211 11
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
..+||+|+.++... . -..++..+.+.|+|||.|++--+.. .....
T Consensus 223 --------------------~~~fDlVvan~~~~-----------~--l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~ 267 (288)
T TIGR00406 223 --------------------EGKADVIVANILAE-----------V--IKELYPQFSRLVKPGGWLILSGILE--TQAQS 267 (288)
T ss_pred --------------------CCCceEEEEecCHH-----------H--HHHHHHHHHHHcCCCcEEEEEeCcH--hHHHH
Confidence 25799999854211 1 1578999999999999999865433 33456
Q ss_pred HHHHHHHhccc
Q 004164 700 VISRMKMVFNH 710 (771)
Q Consensus 700 v~~~l~~vF~~ 710 (771)
+.+.+++.|.-
T Consensus 268 v~~~~~~~f~~ 278 (288)
T TIGR00406 268 VCDAYEQGFTV 278 (288)
T ss_pred HHHHHHccCce
Confidence 67777766543
No 227
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.40 E-value=2.4e-06 Score=81.95 Aligned_cols=119 Identities=16% Similarity=0.203 Sum_probs=98.2
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTS 127 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~ 127 (771)
-+-+++.+..-+.. ..+.-|||+|.|||.++..+..+|. .+++++++|+.......++. +...++.+|+.+
T Consensus 33 Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----CCccccccchhh
Confidence 34456666666664 6778999999999999999999864 68999999999998776554 777899999988
Q ss_pred CC-----CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 128 MQ-----FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 128 l~-----~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+. +.+..||.|++.-.+-.++... .-++++.+...|.+||.++..+|+
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~-----~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHR-----RIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHH-----HHHHHHHHHHhcCCCCeEEEEEec
Confidence 74 6678899999988777776443 668999999999999999999998
No 228
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.40 E-value=4.1e-08 Score=87.88 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=58.0
Q ss_pred EEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCC---CeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDK---SLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~---r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
|+||+|+|.+...+...+|..++++||++|.+++.|++.+.-.... ++++...|..+. .
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~--------------- 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY---D--------------- 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C---C---------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc---c---------------
Confidence 6899999999999999999999999999999999998888422222 233322222211 0
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEE
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gil 685 (771)
...+||+|+. .+. ..-+ + --..+|+++++.|+|||+|
T Consensus 63 ----------------~~~~fD~V~~--~~v--l~~l----~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 63 ----------------PPESFDLVVA--SNV--LHHL----E--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------------C----SEEEE--E-T--TS------S---HHHHHHHHTTT-TSS-EE
T ss_pred ----------------cccccceehh--hhh--Hhhh----h--hHHHHHHHHHHHcCCCCCC
Confidence 1258999997 111 1111 1 2268999999999999986
No 229
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.39 E-value=3.3e-06 Score=94.56 Aligned_cols=110 Identities=11% Similarity=0.158 Sum_probs=79.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-C-CCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-D-KSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~-~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+||++|+|+|+++..+... +..+|++||+++.+++.|++.+.+.. + ++++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh----------
Confidence 478999999999986554432 34599999999999999999984421 2 4799999999999977541
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-----cHHHHHHHHHccCCCcEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-----EGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-----~~~fl~~~~~~L~~~Gilv~ 687 (771)
.+.+||+||+|...-... ...+. -.++++.+.++|+|||+|+.
T Consensus 290 -------------------~~~~fDlVilDPP~f~~~------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 290 -------------------RGEKFDVIVMDPPKFVEN------KSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred -------------------cCCCCCEEEECCCCCCCC------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 135799999975322110 00111 13456678899999999986
No 230
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.39 E-value=1.2e-06 Score=89.12 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|.|.++.+|.+. ..+|++||+++.+++.|++...-..-.+++++++|..++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~------------- 92 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF------------- 92 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-------------
Confidence 3478999999999999999886 358999999999999999876322223578888886543 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||+|+.=. . .. .+++.. ...+++.+++.|+|||.+++
T Consensus 93 -------------------~~~fD~I~~~~--~--~~--~~~~~~--~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 93 -------------------DGEYDFILSTV--V--LM--FLEAKT--IPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------------------CCCcCEEEEec--c--hh--hCCHHH--HHHHHHHHHHHcCCCcEEEE
Confidence 14699998611 1 00 001111 26899999999999998543
No 231
>PLN02244 tocopherol O-methyltransferase
Probab=98.39 E-value=1.8e-06 Score=95.15 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=79.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||+||+|.|.++..|...+ ..+|++||+++.+++.|++...- ...++++++++|+.+. .
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~----~----------- 181 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ----P----------- 181 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC----C-----------
Confidence 45789999999999999999877 56999999999999999887521 1245799999998653 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
..+..||+|+.-. +. .-+ + -...+++.+.+.|+|||.|++-.++
T Consensus 182 ------------------~~~~~FD~V~s~~-~~---~h~----~--d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 182 ------------------FEDGQFDLVWSME-SG---EHM----P--DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ------------------CCCCCccEEEECC-ch---hcc----C--CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1136799998711 11 101 1 1267999999999999999986543
No 232
>PLN02672 methionine S-methyltransferase
Probab=98.39 E-value=1.6e-06 Score=106.55 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC-----------------CCcEEEEeecCCCCC
Q 004164 69 PPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR-----------------SDMRWRVMDMTSMQF 130 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~-----------------~~i~~~~~D~~~l~~ 130 (771)
+.+|||+|||+|.++..++... ..+|+++|+|+.+++.+++.+.... .+++|+++|+.+..-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999998874 3689999999999998765553321 368999999987431
Q ss_pred C-CCCccEEEecccc----------------------------ccccC---cccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 131 M-DETFDVILDKGGL----------------------------DALME---PELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 131 ~-~~sFDlVi~~~~l----------------------------~~l~~---~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
. ..+||+|+++-.- .++.. .+++...+++++.+..++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 1369999975321 01111 13445568999999999999999888654
No 233
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.38 E-value=4.7e-07 Score=94.31 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=72.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+.+||++|+|+|.++..|.+.. |..+|++||+++.|+++|++...-....+++++++|+.+. .
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p------------ 111 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--P------------ 111 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------------
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--c------------
Confidence 456799999999999998888775 5679999999999999999886321124899999999764 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+..||+|.+=- |+ ..+- -...|+.+.+.|+|||.|++-=.++
T Consensus 112 -------------------~~d~sfD~v~~~f-------gl----rn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 112 -------------------FPDNSFDAVTCSF-------GL----RNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -------------------S-TT-EEEEEEES--------G----GG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred -------------------CCCCceeEEEHHh-------hH----HhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 1247899999721 11 1111 3679999999999999888643333
No 234
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.38 E-value=8.5e-07 Score=90.68 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||.||.|+|..+..|...... ..|++||++|.+++.|++.+.-..-.++.++++||..-...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~------------ 138 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE------------ 138 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG------------
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc------------
Confidence 34579999999999999999988654 47999999999999999998321224799999999764322
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
...||.|++..-..+ .| ..+.+.|++||.+|+-+-.
T Consensus 139 ---------------------~apfD~I~v~~a~~~-------ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 139 ---------------------EAPFDRIIVTAAVPE-------IP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------------G-SEEEEEESSBBSS------------------HHHHHTEEEEEEEEEEESS
T ss_pred ---------------------CCCcCEEEEeeccch-------HH---------HHHHHhcCCCcEEEEEEcc
Confidence 246999999542221 11 3355669999999998753
No 235
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.37 E-value=1.8e-06 Score=91.42 Aligned_cols=88 Identities=9% Similarity=0.158 Sum_probs=70.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
+.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... .++++++++|+.++++
T Consensus 15 ~~~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCc
Confidence 3445555555543 5678999999999999999999865 899999999999988766633 4689999999998876
Q ss_pred CCCCccEEEeccccc
Q 004164 131 MDETFDVILDKGGLD 145 (771)
Q Consensus 131 ~~~sFDlVi~~~~l~ 145 (771)
+ .||.|+++-..+
T Consensus 90 ~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 P--EFNKVVSNLPYQ 102 (258)
T ss_pred h--hceEEEEcCCcc
Confidence 5 489999876654
No 236
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=5.8e-06 Score=93.97 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=95.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|.|..+..+....+..+|+++|+++.+++.+++.+.-. +-+++++.+|+.+......
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~~~------------ 310 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQWWD------------ 310 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhhcc------------
Confidence 456899999999999999998887679999999999999999887321 1236899999976422111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCCCcEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~~Gilv 686 (771)
..+||.|++|.-.+. .|.....+.. ....+|+.+.+.|+|||.++
T Consensus 311 -------------------~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lv 369 (427)
T PRK10901 311 -------------------GQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLL 369 (427)
T ss_pred -------------------cCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 256999999984331 2221111111 12478999999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhcc
Q 004164 687 VNLVSRSQATKDMVISRMKMVFN 709 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF~ 709 (771)
+...+-.....+.++..+.+-.+
T Consensus 370 ystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 370 YATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred EEeCCCChhhCHHHHHHHHHhCC
Confidence 98876666555566655554333
No 237
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=1.7e-06 Score=91.23 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=91.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
....++|+||+|.|++..++.+.+ +++|++|.++++..+.|++.+ |+ ..+++|...|=.++
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl--~~~v~v~l~d~rd~------------- 134 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL--EDNVEVRLQDYRDF------------- 134 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC--CcccEEEecccccc-------------
Confidence 456899999999999999999998 789999999999999999977 65 35899998987776
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.++||-|+. .++.--... .-+.|++.+++.|+|||.+++..+.....
T Consensus 135 -----------------------~e~fDrIvSvgmfEhvg~~---------~~~~ff~~~~~~L~~~G~~llh~I~~~~~ 182 (283)
T COG2230 135 -----------------------EEPFDRIVSVGMFEHVGKE---------NYDDFFKKVYALLKPGGRMLLHSITGPDQ 182 (283)
T ss_pred -----------------------ccccceeeehhhHHHhCcc---------cHHHHHHHHHhhcCCCceEEEEEecCCCc
Confidence 245999984 222211111 23899999999999999999887765432
Q ss_pred HH-HHHHHHHHHhccc
Q 004164 696 TK-DMVISRMKMVFNH 710 (771)
Q Consensus 696 ~~-~~v~~~l~~vF~~ 710 (771)
.. ....-..+-+||.
T Consensus 183 ~~~~~~~~i~~yiFPg 198 (283)
T COG2230 183 EFRRFPDFIDKYIFPG 198 (283)
T ss_pred ccccchHHHHHhCCCC
Confidence 21 2222333556774
No 238
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.36 E-value=1.9e-06 Score=89.19 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
...++||||+|.|..+..|+.. +.+|++++.|+.|....+++ + .+ +.|..+..-.+.+||+|.+-.+|+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g--~~--vl~~~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G--FT--VLDIDDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C--Ce--EEehhhhhccCCceEEEeehhhhhcc
Confidence 4578999999999999999765 67999999999876655433 2 22 23333333335689999999999988
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..|. .+|+.+++.|+|+|++++.-
T Consensus 165 ~~P~-------~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 DRPL-------TLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCHH-------HHHHHHHHHhCCCCEEEEEE
Confidence 7766 89999999999999988764
No 239
>PRK03612 spermidine synthase; Provisional
Probab=98.35 E-value=1.3e-06 Score=101.54 Aligned_cols=110 Identities=18% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHH--hh------cCCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRR--NV------RDRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~--~~------~~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
+..+|||+|||+|..+.++.+.+. .+|+++|+++.+++.+++. .. -..++++++..|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 467999999999999999988754 6999999999999988662 11 1236899999998874 233478999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
|++...-....... .-.-+.+++.+++.|+|||++++...
T Consensus 377 Ii~D~~~~~~~~~~--~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 377 IIVDLPDPSNPALG--KLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEeCCCCCCcchh--ccchHHHHHHHHHhcCCCeEEEEecC
Confidence 99864322211000 00124688999999999999988653
No 240
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.35 E-value=1.5e-06 Score=92.81 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=67.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM 131 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~ 131 (771)
.+...+.+.+.. .++.+|||+|||+|.++..+++.+. +|+++|+++.+++.++++... ++++++++|+.+++++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHH
Confidence 444555565543 5778999999999999999999876 999999999999988765532 6899999999998765
Q ss_pred CCCccEEEeccc
Q 004164 132 DETFDVILDKGG 143 (771)
Q Consensus 132 ~~sFDlVi~~~~ 143 (771)
+-.+|.|+++-.
T Consensus 103 ~~~~~~vv~NlP 114 (272)
T PRK00274 103 ELQPLKVVANLP 114 (272)
T ss_pred HcCcceEEEeCC
Confidence 433588887644
No 241
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.35 E-value=4.5e-06 Score=88.06 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+....+ .+|++||+||.+++.|++.+.... ..++.+..+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-------------------- 176 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-------------------- 176 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------------
Confidence 3467899999999999988777543 379999999999999999874311 112222111
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
+.+||+|+.++... .-..++..+.+.|+|||.|++.-+.. ....
T Consensus 177 ---------------------~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~--~~~~ 220 (250)
T PRK00517 177 ---------------------DLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILE--EQAD 220 (250)
T ss_pred ---------------------CCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcH--hhHH
Confidence 12599999854221 12578899999999999999864333 2234
Q ss_pred HHHHHHHHh-cc
Q 004164 699 MVISRMKMV-FN 709 (771)
Q Consensus 699 ~v~~~l~~v-F~ 709 (771)
.+...+++. |.
T Consensus 221 ~v~~~l~~~Gf~ 232 (250)
T PRK00517 221 EVLEAYEEAGFT 232 (250)
T ss_pred HHHHHHHHCCCE
Confidence 566666665 44
No 242
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.34 E-value=3.9e-06 Score=95.56 Aligned_cols=121 Identities=9% Similarity=0.101 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC----CCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM----QFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l----~~~~~sFDlVi~~ 141 (771)
.++.+|||+|||+|.++..|++... +|+++|+++.+++.+++.+...+ .+++|+.+|+.+. ++.+++||+|+..
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 4568999999999999999998754 89999999999998877654433 5799999998753 2345679999953
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMS 199 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~ 199 (771)
-.=..+ ...+++.+.+ ++|++.++++ .....+...+......+|.+.
T Consensus 370 PPr~G~---------~~~~l~~l~~-l~~~~ivyvs-c~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 PPRKGC---------AAEVLRTIIE-LKPERIVYVS-CNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred cCCCCC---------CHHHHHHHHh-cCCCEEEEEc-CCHHHHHHHHHHHHHCCeeEE
Confidence 321110 1355665554 7888765554 333333333333334456554
No 243
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.34 E-value=1.4e-06 Score=89.94 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=77.6
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
++||+||+|.|.+...+...+|..+++++|+++.+++.|++.+.- ..+++++++.+|..+. .
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~----~------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD----P------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC----C-------------
Confidence 369999999999999998888888999999999999999998721 1256789998886432 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...+||+|+.-- +.+.... ...+|+.+++.|+|||.+++--
T Consensus 64 -----------------~~~~fD~I~~~~--------~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 -----------------FPDTYDLVFGFE--------VIHHIKD--KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred -----------------CCCCCCEeehHH--------HHHhCCC--HHHHHHHHHHHcCCCCEEEEEE
Confidence 014699998511 1111111 3789999999999999999754
No 244
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.33 E-value=2.8e-06 Score=87.73 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=90.1
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCC-CcEEEEeecCCC---CCCCCCccEEEeccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRS-DMRWRVMDMTSM---QFMDETFDVILDKGG 143 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~-~i~~~~~D~~~l---~~~~~sFDlVi~~~~ 143 (771)
...+||||||.|.+...+|.. +-.+++||++....+..+.++..+.+- |+.+++.|+..+ -+++++.|-|.....
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 368999999999999999988 447899999999999999999888776 999999999875 245569999986543
Q ss_pred cccccCccc-chHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 144 LDALMEPEL-GHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 144 l~~l~~~~~-~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
=-|.-.-.. -.-.....++.+.++|+|||.+.+.|-..+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 322211110 00125689999999999999999998765443
No 245
>PTZ00146 fibrillarin; Provisional
Probab=98.33 E-value=1.2e-05 Score=85.60 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=92.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHH----HHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLT----MLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~----v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||.||+|.|.++..+..... .-.|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~------ 197 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR------ 197 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh------
Confidence 3446899999999999999999874 348999999986 55666533 45788999976321 111
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC-
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS- 693 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~- 693 (771)
.....+|+|++|+...|. ...++.+++..|+|+|.|++-+-.++
T Consensus 198 -----------------------~~~~~vDvV~~Dva~pdq------------~~il~~na~r~LKpGG~~vI~ika~~i 242 (293)
T PTZ00146 198 -----------------------MLVPMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFIISIKANCI 242 (293)
T ss_pred -----------------------cccCCCCEEEEeCCCcch------------HHHHHHHHHHhccCCCEEEEEEecccc
Confidence 001469999999843221 14566789999999999998432221
Q ss_pred -----h-hHHHHHHHHHHHh-ccceEEeeec--CCccEEEEEecC
Q 004164 694 -----Q-ATKDMVISRMKMV-FNHLFCLQLE--EDVNLVLFGLSS 729 (771)
Q Consensus 694 -----~-~~~~~v~~~l~~v-F~~v~~~~~~--~~~N~Vl~a~~~ 729 (771)
+ +....-++.|++. |..+-.+.++ ...+.++++...
T Consensus 243 d~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 243 DSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 1 1122235778887 8854444433 334555665443
No 246
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.33 E-value=4.8e-06 Score=87.05 Aligned_cols=132 Identities=20% Similarity=0.319 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~ 125 (771)
|+.=...+..++.. .|+.+|||.|.|+|.++..|+.. +.++|+..|+.+...+.|++.+...+ .++++...|+
T Consensus 25 YpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 25 YPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp -HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred eCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 33334556677665 79999999999999999999976 34799999999999999988876655 4789999999
Q ss_pred CCCCCC---CCCccEEEeccccccccCcccchHHHHHHHHHHHHcc-ccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 126 TSMQFM---DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLL-KSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 126 ~~l~~~---~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvL-kpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
.+..|+ +..||.|+. | ++++- .++..+.+.| ++||++++...+-+.+.+.+...-..+|
T Consensus 102 ~~~g~~~~~~~~~DavfL----D-lp~Pw-------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL----D-LPDPW-------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp GCG--STT-TTSEEEEEE----E-SSSGG-------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred ecccccccccCcccEEEE----e-CCCHH-------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 865453 367999984 3 34444 6799999999 8999999988775554443333223354
No 247
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.33 E-value=1.2e-05 Score=82.42 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=79.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+.+||++|+|.|.++..+....|. .+++++|+++.+++.+++.+. ...+++++.+|..+.. .
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~--~------------ 102 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP--F------------ 102 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC--C------------
Confidence 5679999999999998888888775 699999999999999999886 3567899999887642 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
...+||+|++...-. . ... -..+++.+++.|+|||.+++-
T Consensus 103 -------------------~~~~~D~i~~~~~~~----~----~~~--~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 103 -------------------EDNSFDAVTIAFGLR----N----VTD--IQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred -------------------CCCcEEEEEEeeeeC----C----ccc--HHHHHHHHHHHcCCCcEEEEE
Confidence 125799998732111 1 111 257999999999999999863
No 248
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.32 E-value=3.3e-06 Score=86.71 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=74.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|+|.++.++.... .++++||+++.+++.|++.+.-..-.+++++.+|+.+.+.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------- 140 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-------------- 140 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC--------------
Confidence 345789999999999888887775 3799999999999999998732112348999999754211
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 12569999996411 1223556789999999999875
No 249
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.32 E-value=4.2e-06 Score=84.99 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|+|+++..+..... .+|++||+|+..+++|++.+....-++++++.+|..+++...
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~-------------- 118 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP-------------- 118 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc--------------
Confidence 35899999999999875333332 599999999999999999863222246999999999887532
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHc--cCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDA--LSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~--L~~~Gilv~Nl~ 690 (771)
...||+|++|.- ...| +..+.++.+... |.++|++++-..
T Consensus 119 ------------------~~~fDlV~~DPP---y~~g--------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 119 ------------------GTPHNVVFVDPP---FRKG--------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ------------------CCCceEEEECCC---CCCC--------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 145999999531 0111 245666766664 789999997653
No 250
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=8e-06 Score=79.53 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=95.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
...-+||||||+|..+..|+.. +...+.++|+++.+++..++.+..++-++..++.|+..- ...++.|+++.+-..-
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 3567999999999999999887 445788999999999877777766667788899988763 2348889888543221
Q ss_pred --------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEee
Q 004164 146 --------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHA 202 (771)
Q Consensus 146 --------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~ 202 (771)
+.....++.+...+++..+-.+|.|.|.|++.....+...+-+...-..+|..++..
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEE
Confidence 112223344457889999999999999999998875554333322224467666543
No 251
>PRK04148 hypothetical protein; Provisional
Probab=98.31 E-value=8.9e-06 Score=76.68 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcch-hHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSR-LSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~-ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
.+...+.+.+.. ..+.+|||||||.|. ++..|++.|+ +|+++|+++.+++.+++. .+.+++.|+.+-++
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh------CCeEEECcCCCCCH
Confidence 345556665543 356899999999995 8899998888 999999999998877544 37889999988653
Q ss_pred C-CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 131 M-DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 131 ~-~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
. -+.+|+|.+.. +.++ +...+-++.+.+ |.-+++..++.+.
T Consensus 73 ~~y~~a~liysir-----pp~e-----l~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 73 EIYKNAKLIYSIR-----PPRD-----LQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHhcCCEEEEeC-----CCHH-----HHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 3 35688888532 2222 344455555444 4457777776544
No 252
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.31 E-value=6.5e-06 Score=86.05 Aligned_cols=125 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHH--HHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIK--FVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~--~l~~~~~~~~~ 613 (771)
....+||.-|.|.|+|+.+|... .|.-+|...|+.++-++.|++.| |+ ++++++++.|-.+ |..+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl--~~~v~~~~~Dv~~~g~~~~------- 109 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL--DDNVTVHHRDVCEEGFDEE------- 109 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC--CTTEEEEES-GGCG--STT-------
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC--CCCceeEecceeccccccc-------
Confidence 45679999999999999988864 57779999999999999999998 55 5689999999752 2011
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHcc-CCCcEEEEEeccC
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL-SEQGLFIVNLVSR 692 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L-~~~Gilv~Nl~~~ 692 (771)
-...+|+||+|+-++ .+.+..+.+.| ++||.+++-+ +
T Consensus 110 -------------------------~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fs--P 147 (247)
T PF08704_consen 110 -------------------------LESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFS--P 147 (247)
T ss_dssp --------------------------TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEE--S
T ss_pred -------------------------ccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEEC--C
Confidence 125799999999555 56789999999 8999999665 4
Q ss_pred ChhHHHHHHHHHHH-hccceEEee
Q 004164 693 SQATKDMVISRMKM-VFNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~~~l~~-vF~~v~~~~ 715 (771)
.-+.....+..|++ -|.++-.++
T Consensus 148 ~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 148 CIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp SHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeeeEEEE
Confidence 44444556777776 466554443
No 253
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=8.2e-06 Score=92.94 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=98.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||++|+|.|+.+.++....+ ..+|+++|+++.+++.+++.+ |+ .+++++.+|+.++.....
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~-------- 320 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKP-------- 320 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccc--------
Confidence 446899999999999988888764 358999999999999998876 54 358999999987632110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcC-c------------ccHHHHHHHHHccCCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AAD-F------------VEGSFLLTVKDALSEQ 682 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~-f------------~~~~fl~~~~~~L~~~ 682 (771)
.....||.|++|+-.+. .|+..- |.. + +..++|..+.+.|+||
T Consensus 321 ---------------------~~~~~fD~Vl~DaPCSg--~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 321 ---------------------QWRGYFDRILLDAPCSG--LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred ---------------------cccccCCEEEEeCCCCc--ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01256999999985432 122111 111 1 1468899999999999
Q ss_pred cEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 683 GLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 683 Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
|.||+...+-.++..+.++..+.+-++.
T Consensus 378 G~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 378 GTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 9999988777777777777766665554
No 254
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.30 E-value=6e-06 Score=87.21 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=67.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF 130 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~ 130 (771)
..+...+.+.+.. .++.+|||+|||+|.++..|++.+. .++++|+++.+++.++++... .++++++.+|+.++++
T Consensus 15 ~~i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 15 ESVIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCCh
Confidence 3445555555543 5678999999999999999999875 799999999999988766532 5689999999999876
Q ss_pred CCCCcc---EEEecccc
Q 004164 131 MDETFD---VILDKGGL 144 (771)
Q Consensus 131 ~~~sFD---lVi~~~~l 144 (771)
+ +|| +|+++-..
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 5 466 77765443
No 255
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=2.9e-06 Score=85.97 Aligned_cols=137 Identities=16% Similarity=0.243 Sum_probs=85.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCee----EEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK----VHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~----v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
-.+..+|+||+-.|.|+..++..|....|.+||||+..++.|+++..+..+.... ..++++..|..=.. ...++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-cccccc
Confidence 3567899999999999999999998889999999999999999998765433222 23444444422111 111111
Q ss_pred ccccc-ccccccCCCCCCCCCC---CCCCCceeEEEE-------eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcE
Q 004164 616 MSVVH-GNEITSNNTRSCNGNC---TASNARVDILII-------DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 616 ~~~~~-~~~~~~~~~~~~~~~~---~~~~~~yDvIi~-------D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gi 684 (771)
..... +.+.....+...+... .....+||+|++ -++-+| .|| ..||+.+.++|.|||+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD--~GL---------~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGD--DGL---------RRFFRKISSLLHPGGI 204 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEeccccc--HHH---------HHHHHHHHHhhCcCcE
Confidence 00000 0000000000111100 234578999984 334444 356 8999999999999999
Q ss_pred EEEE
Q 004164 685 FIVN 688 (771)
Q Consensus 685 lv~N 688 (771)
||+-
T Consensus 205 LvvE 208 (288)
T KOG2899|consen 205 LVVE 208 (288)
T ss_pred EEEc
Confidence 9974
No 256
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=5.7e-06 Score=88.55 Aligned_cols=146 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
+||+||+|+|+++..|....|+.+|+++||+|..+++|++......-.++.++.+ ++.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~--------------- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR--------------- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC---------------
Confidence 7999999999999999999999999999999999999998862211034444444 4444433
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCC--CC--------------CCCCcCCcC-cccHHHHHHHHHccCCCcEEE
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPD--SS--------------SGMTCPAAD-FVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d--~~--------------~g~s~pp~~-f~~~~fl~~~~~~L~~~Gilv 686 (771)
++||+|+..- +- .. ..+-.-+.. -+-..|+..+.+.|+|+|+++
T Consensus 175 -----------------~~fDlIVsNP--PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 -----------------GKFDLIVSNP--PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred -----------------CceeEEEeCC--CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 3799999722 10 00 000000000 134678889999999999999
Q ss_pred EEeccCChhHHHHHHHHHHHhc--cceEEeeecCCccEEEEEecC
Q 004164 687 VNLVSRSQATKDMVISRMKMVF--NHLFCLQLEEDVNLVLFGLSS 729 (771)
Q Consensus 687 ~Nl~~~~~~~~~~v~~~l~~vF--~~v~~~~~~~~~N~Vl~a~~~ 729 (771)
+-.-....+ .+.+.+.+.. ..+...+-..+.+.|+.+...
T Consensus 236 le~g~~q~~---~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 236 LEIGLTQGE---AVKALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEECCCcHH---HHHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence 876433333 3444444444 344555544556667766543
No 257
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.28 E-value=5.9e-06 Score=89.63 Aligned_cols=107 Identities=18% Similarity=0.154 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc----C-CCeEEEEcCCHHHHHHHHHHhh-cCCCCcEE--EEeecCCC----CC--CC
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA----G-FHGITNVDFSKVVISDMLRRNV-RDRSDMRW--RVMDMTSM----QF--MD 132 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~----g-~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~--~~~D~~~l----~~--~~ 132 (771)
.++..|+|+|||+|.-+..|.+. + ...++++|+|..+++.+.++.. ...+.+.+ +++|..+. +- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 35668999999999988776654 2 2479999999999999988887 56677666 78888663 21 12
Q ss_pred CCccEEEecc-ccccccCcccchHHHHHHHHHHHH-ccccCeEEEEEE
Q 004164 133 ETFDVILDKG-GLDALMEPELGHKLGNQYLSEVKR-LLKSGGKFVCLT 178 (771)
Q Consensus 133 ~sFDlVi~~~-~l~~l~~~~~~~~~~~~~l~~i~r-vLkpGG~~ii~~ 178 (771)
....+|+.-| ++.++...+ ...+|+++++ .|+|||.|++.-
T Consensus 155 ~~~r~~~flGSsiGNf~~~e-----a~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPE-----AAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCccEEEEeCccccCCCHHH-----HHHHHHHHHHhhCCCCCEEEEec
Confidence 3456777655 888877655 7799999999 999999887743
No 258
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.28 E-value=4.9e-06 Score=83.80 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTS 127 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i-~~~~~D~~~ 127 (771)
..+...|.+++.. .+.+|||||||||..+.+++.. +.-...-.|..+..+..........+ +++ .-+..|+..
T Consensus 12 ~pIl~vL~~~l~~----~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPD----SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCc----cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 3566678888753 3336999999999999999987 33366678998887654444332222 332 345677776
Q ss_pred CCCC--------CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 128 MQFM--------DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 128 l~~~--------~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+.+ .++||.|++..++|.++... .+.+|+...++|++||.|++--
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~-----~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSA-----VEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHH-----HHHHHHHHHHhCCCCCEEEEeC
Confidence 5322 45899999999999876544 7899999999999999988753
No 259
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.28 E-value=3.2e-06 Score=86.16 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-----CCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-----FMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-----~~~~sFDl 137 (771)
...+||||||++|..+.+|++. + .++|+.+|+++...+.+++.+...+ .+++++.+|+.+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4579999999999999999986 3 3699999999999998877665544 5799999999763 1 12358999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
|+.-+.= .....++..+.++|+|||.+++-.
T Consensus 125 VFiDa~K----------~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDADK----------RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEESTG----------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcccc----------cchhhHHHHHhhhccCCeEEEEcc
Confidence 9953311 126789999999999999988754
No 260
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.28 E-value=1.2e-05 Score=80.19 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+.-.++|.+|+|.|.|+..|..+. .+++++|+++..++.||+..+ .-++++++++|--++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~--------------- 102 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW--------------- 102 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC---------------
Confidence 344689999999999999998885 489999999999999999985 3478999999876652
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-----HHHHHHHHHccCCCcEEEEEeccC--
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-----GSFLLTVKDALSEQGLFIVNLVSR-- 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-----~~fl~~~~~~L~~~Gilv~Nl~~~-- 692 (771)
+..+||+|++ +. -..|++ ..++..+...|+|||.||+--+..
T Consensus 103 -------------------P~~~FDLIV~----SE--------VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~ 151 (201)
T PF05401_consen 103 -------------------PEGRFDLIVL----SE--------VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN 151 (201)
T ss_dssp --------------------SS-EEEEEE----ES---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH
T ss_pred -------------------CCCCeeEEEE----eh--------HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc
Confidence 1368999998 22 123343 247889999999999999854311
Q ss_pred -----ChhHHHHHHHHHHHhccceEEeeecC---CccEEEEEecCC
Q 004164 693 -----SQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLFGLSSE 730 (771)
Q Consensus 693 -----~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~a~~~~ 730 (771)
+..-.+.++..|++.|..|-.+.+.. +.+-++..+.++
T Consensus 152 c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (201)
T PF05401_consen 152 CRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNP 197 (201)
T ss_dssp HHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--
T ss_pred ccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCC
Confidence 12234788899999999877776532 334455555443
No 261
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=6.2e-06 Score=83.52 Aligned_cols=109 Identities=13% Similarity=0.257 Sum_probs=87.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+++++|+||.=+|.-+......+| .-+|+++|+|+.-.+++.+.-.+. -+..+++++++|.+-|.++-.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~--------- 143 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA--------- 143 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh---------
Confidence 578999999999966555555555 469999999999999997765322 367899999999999998763
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+...||.+|+|.|.... ..+++.+-++|++||+++++-
T Consensus 144 ------------------~~~~~tfDfaFvDadK~nY-------------~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 144 ------------------DGESGTFDFAFVDADKDNY-------------SNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred ------------------cCCCCceeEEEEccchHHH-------------HHHHHHHHhhcccccEEEEec
Confidence 1235789999999877632 389999999999999999853
No 262
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.26 E-value=6e-06 Score=82.52 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=84.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
..+.+|..||||.|..+..|++.+|...|+++|-||+|++-|++.. +.+++..+|...|=.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p-------------- 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKP-------------- 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCC--------------
Confidence 4568999999999999999999999999999999999999998875 468999999999811
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....|+|+..+ . ...+ | -..+.|..+-..|.|||+|++.+...
T Consensus 90 --------------------~~~~dllfaNA--v--lqWl---p---dH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 90 --------------------EQPTDLLFANA--V--LQWL---P---DHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred --------------------CCccchhhhhh--h--hhhc---c---ccHHHHHHHHHhhCCCceEEEECCCc
Confidence 25688887632 1 1111 1 13678899999999999999998665
No 263
>PLN02476 O-methyltransferase
Probab=98.26 E-value=7.5e-06 Score=86.90 Aligned_cols=102 Identities=9% Similarity=0.033 Sum_probs=79.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C----CCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F----MDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~----~~~sFD 136 (771)
.+..+|||||||+|..+.+++.. + .+.|+.+|.++...+.+++.+.+.+ ++++++.+|+.+. + + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 35689999999999999999875 2 3579999999999998877765554 4799999998663 2 1 136899
Q ss_pred EEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 137 VILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 137 lVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+|+.-+. ......+++.+.++|+|||.+++-.
T Consensus 197 ~VFIDa~----------K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDAD----------KRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECCC----------HHHHHHHHHHHHHhcCCCcEEEEec
Confidence 9995321 1236799999999999999987753
No 264
>PRK06922 hypothetical protein; Provisional
Probab=98.25 E-value=5.2e-06 Score=96.39 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.+...|...+|..++++||+++.|++.|++.... ...+++++.+|+.++-....
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~fe------------ 484 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSSFE------------ 484 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccccC------------
Confidence 35789999999999988888888999999999999999999987532 23468889999887411111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-----CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDV-----DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-----~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
+..||+|+... .+--+..+...++. .-..+|+.+.+.|+|||.+++.-
T Consensus 485 -------------------deSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 485 -------------------KESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------------CCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 35799998621 00000000000001 22688999999999999999863
No 265
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.24 E-value=5.9e-06 Score=83.74 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=97.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
-+|.||+|.|.....++...|+..+.+||+....+..|.+......-.++.++.+||..++...-.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~-------------- 85 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP-------------- 85 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST--------------
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc--------------
Confidence 689999999999999999999999999999999999887776222337899999999999988651
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHH
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 703 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 703 (771)
+...|-|.+-- +||..--.-.-..+++++||+.+.++|+|||.+- +.+.+..+.+.+++.
T Consensus 86 ----------------~~~v~~i~i~F--PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~ 145 (195)
T PF02390_consen 86 ----------------PGSVDRIYINF--PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQ 145 (195)
T ss_dssp ----------------TTSEEEEEEES-------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHH
T ss_pred ----------------CCchheEEEeC--CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHH
Confidence 36799998833 4443211112356899999999999999999876 556778887777777
Q ss_pred HHHh
Q 004164 704 MKMV 707 (771)
Q Consensus 704 l~~v 707 (771)
+.+.
T Consensus 146 ~~~~ 149 (195)
T PF02390_consen 146 FEES 149 (195)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7774
No 266
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.23 E-value=5.8e-06 Score=82.92 Aligned_cols=123 Identities=19% Similarity=0.319 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
.+.+.+++... ++...|-|+|||.+.++..+. .+. .|...|.-. .+-.+..+||.+.|.+++
T Consensus 60 vd~iI~~l~~~--~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva--------------~n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 60 VDVIIEWLKKR--PKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA--------------PNPRVTACDIANVPLEDE 121 (219)
T ss_dssp HHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S----EEEEESS---------------SSTTEEES-TTS-S--TT
T ss_pred HHHHHHHHHhc--CCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC--------------CCCCEEEecCccCcCCCC
Confidence 34577777651 345799999999999996653 344 799999855 122467899999999999
Q ss_pred CccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh-hcchhhhh-ccCcEEEEee
Q 004164 134 TFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (771)
Q Consensus 134 sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (771)
+.|+++..-+|-. .. +..++.|..|+||+||.+.+.+...... .+.+.... ..|+.+....
T Consensus 122 svDv~VfcLSLMG---Tn-----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 122 SVDVAVFCLSLMG---TN-----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -EEEEEEES---S---S------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ceeEEEEEhhhhC---CC-----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 9999997554433 22 7799999999999999999998653211 12233333 3366666544
No 267
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.23 E-value=7.6e-06 Score=89.09 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=74.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...+||+||+|+|.++..+.+..+. ..|++||+++.+++.|++.+.-..-+++.++.+|+.+.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------------- 146 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------------- 146 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-------------
Confidence 4568999999999999988887753 47999999999999999875211124689999998765332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...||+|+++... .+....+.+.|+|||.+++.+
T Consensus 147 --------------------~~~fD~Ii~~~g~----------------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 --------------------FAPYDVIFVTVGV----------------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred --------------------cCCccEEEECCch----------------HHhHHHHHHhcCCCCEEEEEe
Confidence 1359999996321 112234567899999988765
No 268
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.23 E-value=7.1e-06 Score=93.16 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=73.6
Q ss_pred CCeEEEEcCCcchhHHHHHhcC-----CCeEEEEcCCHHHHHHHHHHhh--cCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 69 PPQILVPGCGNSRLSEHLYDAG-----FHGITNVDFSKVVISDMLRRNV--RDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g-----~~~V~~vDiS~~~i~~~~~~~~--~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+..|||+|||+|.++...++++ ..+|++|+-++.++..++++.. ....+++++.+||++...+ +++|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 4689999999999998777664 4699999999988876655422 2347899999999999765 589999987
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
..- .+.+.+ +....|....|.|||||+++
T Consensus 266 lLG-sfg~nE----l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNE----LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTT----SHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-Cccccc----cCHHHHHHHHhhcCCCCEEe
Confidence 543 344433 25567889999999999987
No 269
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.22 E-value=8.2e-06 Score=89.27 Aligned_cols=101 Identities=14% Similarity=0.061 Sum_probs=76.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.+...+...++..++++||+++.+++.|++.+. .++++++.+|+.+. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~l----p------------ 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDL----P------------ 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhC----C------------
Confidence 3468999999999988888887777899999999999999999875 35688899998653 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+..||+|+... . ..-+ | -....|+.+.+.|+|||.+++
T Consensus 174 -----------------~~~~sFDvVIs~~--~--L~~~--~----d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -----------------FPTDYADRYVSAG--S--IEYW--P----DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -----------------CCCCceeEEEEcC--h--hhhC--C----CHHHHHHHHHHhcCCCcEEEE
Confidence 1135799998721 1 0000 1 125689999999999999876
No 270
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.22 E-value=7.2e-06 Score=87.47 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.....+.... +..+|++||+++.+++.|++.+.-..-++++++.+|..+. .
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l----~---------- 141 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL----P---------- 141 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC----C----------
Confidence 455799999999998776666554 4558999999999999999875211124788888986432 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+..||+|+....-. . .+. ...+++.+.+.|+|||.|++.
T Consensus 142 -------------------~~~~~fD~Vi~~~v~~-----~---~~d--~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 -------------------VADNSVDVIISNCVIN-----L---SPD--KERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred -------------------CCCCceeEEEEcCccc-----C---CCC--HHHHHHHHHHHcCCCcEEEEE
Confidence 1135799999743110 0 111 267899999999999999874
No 271
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2e-05 Score=83.52 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=91.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.|...|....|..+|+.||+|..-++.||+......-++..|+.+|..+=
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------------------ 220 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------------------ 220 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------------------
Confidence 34999999999999999999999999999999999999999998432222225666654331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHH
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVI 701 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~ 701 (771)
. ..+||+||. +.+-. .|.. ....+..+++..++++|++||-|-+-.- +... .-
T Consensus 221 ----------------v-~~kfd~Iis--NPPfh-~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~----y~ 273 (300)
T COG2813 221 ----------------V-EGKFDLIIS--NPPFH-AGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN-RHLP----YE 273 (300)
T ss_pred ----------------c-cccccEEEe--CCCcc-CCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCC----hH
Confidence 1 137999998 22322 1221 1223445999999999999996654221 3333 35
Q ss_pred HHHHHhccceEEee
Q 004164 702 SRMKMVFNHLFCLQ 715 (771)
Q Consensus 702 ~~l~~vF~~v~~~~ 715 (771)
..|+++|.++..+.
T Consensus 274 ~~L~~~Fg~v~~la 287 (300)
T COG2813 274 KKLKELFGNVEVLA 287 (300)
T ss_pred HHHHHhcCCEEEEE
Confidence 67889999887765
No 272
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.21 E-value=1e-05 Score=80.87 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CC--------eEEEEcCCHHHHHHHHHHhhcCC--CCc
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FH--------GITNVDFSKVVISDMLRRNVRDR--SDM 118 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~--------~V~~vDiS~~~i~~~~~~~~~~~--~~i 118 (771)
+.+...|..+... .++..+||.-||+|.+..+.+..+ .. +++|+|+++.+++.+++.+...+ ..+
T Consensus 14 ~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 14 PTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4555566666554 578899999999999997776552 22 38899999999998877665444 358
Q ss_pred EEEEeecCCCCCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccC
Q 004164 119 RWRVMDMTSMQFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 119 ~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpG 171 (771)
.+.+.|+.++++.++++|+|+++-....-.... ........+++++.++|++.
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 899999999998788999999887666543322 22456889999999999993
No 273
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.21 E-value=1.3e-05 Score=70.05 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=77.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
+++++|.|.|.+...+.. .+..++.++|+++..++.+++........+++++.+|..++... .
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-A--------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-c---------------
Confidence 489999999998887777 56679999999999999998433222356799999998887541 1
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|+.+..-... .-....+++.+.+.|+++|.+++-
T Consensus 64 ----------------~~~~d~i~~~~~~~~~---------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 ----------------DESFDVIISDPPLHHL---------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------------CCceEEEEEccceeeh---------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2569999995422110 124488899999999999999864
No 274
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.20 E-value=1e-05 Score=85.20 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.++..|... ..+++++|++|.+++.|++.+. ...++++|+... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~----~------------ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESL----P------------ 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccC----c------------
Confidence 4578999999999998888765 3689999999999999998753 246777887542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+.+||+|+....- ..+ + . -..+|..+.+.|+|||.|++.....
T Consensus 99 -----------------~~~~~fD~V~s~~~l----~~~--~--d--~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 -----------------LATATFDLAWSNLAV----QWC--G--N--LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred -----------------CCCCcEEEEEECchh----hhc--C--C--HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 113579999873210 000 1 1 2688999999999999999887654
No 275
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.19 E-value=7.5e-06 Score=83.03 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||++|+|.|.++.+|... ..+|++||++|.+++.|++...- .+-.+++.+.|...+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~-~~~~v~~~~~d~~~~--~~------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAR-ENLPLRTDAYDINAA--AL------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHH-hCCCceeEeccchhc--cc-------------
Confidence 3578999999999999999885 35899999999999999876631 111256666665332 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|+.-. . ..-+ ++. ....+++.+++.|+|||.+++.
T Consensus 92 -------------------~~~fD~I~~~~--~--~~~~--~~~--~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 -------------------NEDYDFIFSTV--V--FMFL--QAG--RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred -------------------cCCCCEEEEec--c--cccC--CHH--HHHHHHHHHHHHhCCCcEEEEE
Confidence 14699998621 0 0000 111 1257899999999999985543
No 276
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.18 E-value=5.6e-06 Score=88.83 Aligned_cols=162 Identities=15% Similarity=0.249 Sum_probs=98.0
Q ss_pred CceeecCC-ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004164 505 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (771)
Q Consensus 505 ~~~~vd~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~ 583 (771)
..+.+||+ -...-+|..--..+-++..+. ....+||++|+|+|.|+....... ..+|.+||+||..++.|++
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~ 202 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARE 202 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHH
Confidence 45778886 445555532222222222211 344699999999999999888875 3489999999999999999
Q ss_pred hcCCC-CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004164 584 YFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 662 (771)
Q Consensus 584 ~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p 662 (771)
...+. -.+++.++. . .+ ....+||+|+..+...
T Consensus 203 N~~~N~~~~~~~v~~--~----~~-------------------------------~~~~~~dlvvANI~~~--------- 236 (295)
T PF06325_consen 203 NAELNGVEDRIEVSL--S----ED-------------------------------LVEGKFDLVVANILAD--------- 236 (295)
T ss_dssp HHHHTT-TTCEEESC--T----SC-------------------------------TCCS-EEEEEEES-HH---------
T ss_pred HHHHcCCCeeEEEEE--e----cc-------------------------------cccccCCEEEECCCHH---------
Confidence 98332 123565531 0 01 1126899999866443
Q ss_pred CcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEec
Q 004164 663 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 663 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 728 (771)
.-......+.++|+|||.|++.=+-. +..+.+.+.+++-|. ........+++.+..+
T Consensus 237 ----vL~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~~~g~~---~~~~~~~~~W~~l~~~ 293 (295)
T PF06325_consen 237 ----VLLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAYKQGFE---LVEEREEGEWVALVFK 293 (295)
T ss_dssp ----HHHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHHHTTEE---EEEEEEETTEEEEEEE
T ss_pred ----HHHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHHHCCCE---EEEEEEECCEEEEEEE
Confidence 11456677788899999999864333 334567777765333 2222334456655543
No 277
>PRK14967 putative methyltransferase; Provisional
Probab=98.18 E-value=1.1e-05 Score=83.54 Aligned_cols=127 Identities=14% Similarity=0.152 Sum_probs=81.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+... +..+|++||+|+.+++.|++.+... ..++.++.+|..+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~~---------------- 98 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAVE---------------- 98 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhcc----------------
Confidence 468999999999998888775 3358999999999999999876321 1257888898766421
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCC-CCCCCCCCCc--CCcCc--------ccHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVD-SPDSSSGMTC--PAADF--------VEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~-s~d~~~g~s~--pp~~f--------~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
...||+|+.+.- ......+... |...+ .-..+++.+.+.|++||.+++-..
T Consensus 99 ------------------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 99 ------------------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ------------------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 256999999641 1110000000 00000 125688899999999999996432
Q ss_pred cCChhHHHHHHHHHHH
Q 004164 691 SRSQATKDMVISRMKM 706 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~ 706 (771)
... ....++..+++
T Consensus 161 ~~~--~~~~~~~~l~~ 174 (223)
T PRK14967 161 ELS--GVERTLTRLSE 174 (223)
T ss_pred ccc--CHHHHHHHHHH
Confidence 221 12344555543
No 278
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=1.1e-05 Score=82.49 Aligned_cols=116 Identities=19% Similarity=0.152 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE-eecC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV-MDMT 126 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~-~D~~ 126 (771)
..-..|..++.. ....+|||||.+.|..+.+|+.. + .+++|.+|+++.+.+.|++...+.+ +++..+. +|..
T Consensus 46 e~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 46 ETGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred hHHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 333444444443 46789999999999999999987 3 4689999999999999988776655 4577777 4665
Q ss_pred CC-C-CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SM-Q-FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l-~-~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+. . ...++||+|+. ++- +.....++..+.++|+|||.+++-...
T Consensus 123 ~~l~~~~~~~fDliFI----Dad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 123 DVLSRLLDGSFDLVFI----DAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred HHHHhccCCCccEEEE----eCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 53 2 34689999994 321 122569999999999999998886543
No 279
>PRK08317 hypothetical protein; Provisional
Probab=98.18 E-value=1.6e-05 Score=82.21 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=78.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+...+ |..+++++|+++.+++.|++.... ...+++++.+|...+- .
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~--~----------- 83 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLP--F----------- 83 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCC--C-----------
Confidence 445789999999999988888877 677999999999999999988321 2457888888875421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|+....-.. + . -...+++.+.+.|+|||.+++-.
T Consensus 84 --------------------~~~~~D~v~~~~~~~~----~----~--~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 --------------------PDGSFDAVRSDRVLQH----L----E--DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------------------CCCCceEEEEechhhc----c----C--CHHHHHHHHHHHhcCCcEEEEEe
Confidence 1357999998431110 1 0 12678999999999999988643
No 280
>PRK14968 putative methyltransferase; Provisional
Probab=98.18 E-value=2.2e-05 Score=78.43 Aligned_cols=128 Identities=14% Similarity=0.197 Sum_probs=81.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
+..+||++|+|.|.++..+... ..+|+++|+++.+++.|++.+... .+.++.++.+|..+.+ .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---~---------- 87 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---R---------- 87 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---c----------
Confidence 3468999999999999888887 469999999999999998877321 1222888888865421 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCC----------CCCCcCC-cCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSS----------SGMTCPA-ADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~----------~g~s~pp-~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+.+.--.... ....+.. ....-..+++.+.+.|+|+|.+++
T Consensus 88 ---------------------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 88 ---------------------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred ---------------------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 13699999843100000 0000000 011236789999999999999988
Q ss_pred EeccCChhHHHHHHHHHHH
Q 004164 688 NLVSRSQATKDMVISRMKM 706 (771)
Q Consensus 688 Nl~~~~~~~~~~v~~~l~~ 706 (771)
.+.+... .+.+.+.+.+
T Consensus 147 ~~~~~~~--~~~l~~~~~~ 163 (188)
T PRK14968 147 LQSSLTG--EDEVLEYLEK 163 (188)
T ss_pred EEcccCC--HHHHHHHHHH
Confidence 7644321 2334444544
No 281
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.6e-05 Score=84.79 Aligned_cols=164 Identities=13% Similarity=0.144 Sum_probs=102.9
Q ss_pred CceeecCC-ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHh
Q 004164 505 NQLKVYHG-YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAED 583 (771)
Q Consensus 505 ~~~~vd~~-~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~ 583 (771)
..+++||+ -...-||-.-...+-++ +... .++.+||++|+|+|.|+....... ..++.++||||.-+++|++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT~lcL~~L----e~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~e 203 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTTSLCLEAL----EKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARE 203 (300)
T ss_pred eEEEEccccccCCCCChhHHHHHHHH----HHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHH
Confidence 56788987 44555664333222222 2221 367899999999999988877775 3489999999999999999
Q ss_pred hcCCCCCC-CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC
Q 004164 584 YFGFTQDK-SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP 662 (771)
Q Consensus 584 ~Fg~~~~~-r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p 662 (771)
...+..-+ ..++-..+..+. ....+||+|+..+-..
T Consensus 204 Na~~N~v~~~~~~~~~~~~~~----------------------------------~~~~~~DvIVANILA~--------- 240 (300)
T COG2264 204 NARLNGVELLVQAKGFLLLEV----------------------------------PENGPFDVIVANILAE--------- 240 (300)
T ss_pred HHHHcCCchhhhcccccchhh----------------------------------cccCcccEEEehhhHH---------
Confidence 88441111 111111111111 1235899999866332
Q ss_pred CcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHH-HHhccceEEeeecCCccEEEEEe
Q 004164 663 AADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRM-KMVFNHLFCLQLEEDVNLVLFGL 727 (771)
Q Consensus 663 p~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l-~~vF~~v~~~~~~~~~N~Vl~a~ 727 (771)
.-..+...++.+|+|||.+++.=+-. ...++|.+.+ ++-|..+-... ...++.+..
T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl~--~q~~~V~~a~~~~gf~v~~~~~---~~eW~~i~~ 297 (300)
T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGILE--DQAESVAEAYEQAGFEVVEVLE---REEWVAIVG 297 (300)
T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeehH--hHHHHHHHHHHhCCCeEeEEEe---cCCEEEEEE
Confidence 11578889999999999999764433 3356777777 44676554443 234555443
No 282
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.15 E-value=7.9e-06 Score=87.97 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC--CCCcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD--RSDMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~--~~~i~~~~~D~~~l~ 129 (771)
.+...+.+.+.. .++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++... .++++++.+|+.+.+
T Consensus 23 ~i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~ 98 (294)
T PTZ00338 23 LVLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE 98 (294)
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc
Confidence 344445555543 5788999999999999999998865 8999999999999888776543 367999999998876
Q ss_pred CCCCCccEEEeccccc
Q 004164 130 FMDETFDVILDKGGLD 145 (771)
Q Consensus 130 ~~~~sFDlVi~~~~l~ 145 (771)
+ ..||+|+++-..+
T Consensus 99 ~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 99 F--PYFDVCVANVPYQ 112 (294)
T ss_pred c--cccCEEEecCCcc
Confidence 5 3689998764444
No 283
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=2.3e-05 Score=80.93 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=84.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
++.+.+.+.+....-..+..|||+|||+|..+..++.. +...++++|.|+.+|..+.+.+.... ..+..+..+|+..
T Consensus 132 E~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 132 EWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccc
Confidence 33344444443311124568999999999999988776 55689999999999987765543322 4566665555542
Q ss_pred -----CCCCCCccEEEeccccc-------------------cccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 129 -----QFMDETFDVILDKGGLD-------------------ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 129 -----~~~~~sFDlVi~~~~l~-------------------~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+..++.+|+++++-..- ++....++...+..++.-+.|.|+|||.+.+...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 34568899999763221 1111112223477888999999999999887664
No 284
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=1.4e-05 Score=82.74 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCCC-----CCCCccEEEe
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQF-----MDETFDVILD 140 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~~-----~~~sFDlVi~ 140 (771)
.++.++||+|||+|.++..+++.|..+|+++|+++.++....+. .+++ .+...|+..+.. +-..+|+++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~----~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ----DERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc----CCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 35779999999999999999999888999999999888642222 2332 234445443321 1124555553
Q ss_pred ccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 141 KGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
. +..++..+.+.|++ |.+++.
T Consensus 150 S---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 150 S---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred e---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 2 22568889999999 765544
No 285
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.14 E-value=2.8e-05 Score=79.68 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=82.8
Q ss_pred ccCCCCcEEEEeccccHHHHHHHHhCCC------CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 538 SVGKSVKAVVIGLGAGLLPMFLHECMPF------VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 538 ~~~~~~~vLviGlG~G~l~~~L~~~~p~------~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
.++...++|++++|+|-++--+.++.+. .+|+++||+|.|+.++++.- ++..+.++.++.+||.+. +
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L----p 172 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL----P 172 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC----C
Confidence 4566689999999999877766666665 69999999999999999988 888888999999999874 1
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+..||+..+- +.- .. |+ --+..|+.+.+.|+|||.|..
T Consensus 173 -----------------------------Fdd~s~D~yTia-fGI---RN--~t----h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 173 -----------------------------FDDDSFDAYTIA-FGI---RN--VT----HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred -----------------------------CCCCcceeEEEe-cce---ec--CC----CHHHHHHHHHHhcCCCcEEEE
Confidence 124678887761 111 11 11 116789999999999999884
No 286
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.14 E-value=1.2e-05 Score=89.70 Aligned_cols=119 Identities=9% Similarity=0.095 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC-CCCCccEEEeccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF-MDETFDVILDKGGLD 145 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~-~~~sFDlVi~~~~l~ 145 (771)
++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++.+...+ .+++|.++|+.+... ..++||+|+..-.-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45799999999999999999876 489999999999998876654433 479999999976421 124699998653311
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSV 200 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~ 200 (771)
.+ ...+++.+. .++|++.++++.. ...+...+... .+|.+..
T Consensus 312 G~---------~~~~l~~l~-~~~p~~ivyvsc~-p~TlaRDl~~L--~gy~l~~ 353 (374)
T TIGR02085 312 GI---------GKELCDYLS-QMAPKFILYSSCN-AQTMAKDIAEL--SGYQIER 353 (374)
T ss_pred CC---------cHHHHHHHH-hcCCCeEEEEEeC-HHHHHHHHHHh--cCceEEE
Confidence 11 234455554 4788877776653 23333333322 4666653
No 287
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.14 E-value=1.7e-06 Score=89.02 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=73.0
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.+||++|+|||.|..-|.... ..|++||+.+.++++|++|-.. ++-..--+.=-++|+....
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~--dP~~~~~~~y~l~~~~~~~-------------- 152 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKM--DPVLEGAIAYRLEYEDTDV-------------- 152 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhc--Cchhccccceeeehhhcch--------------
Confidence 679999999999999888875 6899999999999999999533 2211110000122332221
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
+....+||+|++ .+.-.-+.- -.+|++.+.++|+|+|.+.+-.+.|.
T Consensus 153 --------------E~~~~~fDaVvc----sevleHV~d------p~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 153 --------------EGLTGKFDAVVC----SEVLEHVKD------PQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred --------------hhcccccceeee----HHHHHHHhC------HHHHHHHHHHHhCCCCceEeeehhhh
Confidence 112356999987 211000000 17899999999999999998766553
No 288
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.14 E-value=1.5e-05 Score=82.72 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
...+||+||+|.|.++..+...+| ..+++++|+++.+++.|++.+.-. ..++++++.+|..+.. .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----------- 117 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--F----------- 117 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--C-----------
Confidence 347899999999999999988887 679999999999999999998431 2457889888876531 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
....||+|++...-. .+ + -...+|+.+.+.|+|||.+++.-
T Consensus 118 --------------------~~~~~D~I~~~~~l~----~~----~--~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 118 --------------------PDNSFDAVTIAFGLR----NV----P--DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred --------------------CCCCccEEEEecccc----cC----C--CHHHHHHHHHHhccCCcEEEEEE
Confidence 125799998732111 01 1 13688999999999999887643
No 289
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.14 E-value=7.4e-06 Score=86.17 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
-.+..|||+|||+|.++...+.+|.++|++++.|+ |.+.+++..+... .+++++.+-+++..+| ++.|+||+.-.-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 35778999999999999999999999999999887 4455655443333 6799999999998877 679999987655
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+.+.+. ..++.++- .++.|+|.|.++
T Consensus 254 ~mL~NE----RMLEsYl~-Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNE----RMLESYLH-ARKWLKPNGKMF 279 (517)
T ss_pred hhhhhH----HHHHHHHH-HHhhcCCCCccc
Confidence 554432 12444443 459999999865
No 290
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.14 E-value=1.6e-05 Score=80.23 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-CC-CCccEEEec
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-MD-ETFDVILDK 141 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-~~-~sFDlVi~~ 141 (771)
.+.++||++||+|.++.+++.+|...|+++|.++.+++.+++.....+ .+++++++|+.+. . + .. ..||+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999999988899999999999987765544333 3688999999553 2 2 12 247888864
Q ss_pred cccccccCcccchHHHHHHHHHHH--HccccCeEEEEEEcC
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVK--RLLKSGGKFVCLTLA 180 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~--rvLkpGG~~ii~~~~ 180 (771)
-.... .....++..+. .+|+++|.+++....
T Consensus 129 PPy~~--------~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN--------GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC--------CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 43321 11334454443 468888887776543
No 291
>PHA03411 putative methyltransferase; Provisional
Probab=98.13 E-value=2.7e-05 Score=82.13 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=78.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+....+..+|++||++|.+++.|++.+ ++++++.+|.+++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------------- 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------------- 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------------
Confidence 46899999999999888877766679999999999999999864 368999999988742
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCC---CCCCCcC------CcCcc-cHHHHHHHHHccCCCcEEEEEec
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDV-DSPDS---SSGMTCP------AADFV-EGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~---~~g~s~p------p~~f~-~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+||.+. +.... ...+ .. .-..+ -..|+..+...|.|+|.+.+-..
T Consensus 124 ------------------~~kFDlIIsNPPF~~l~~~d~~~~-~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys 184 (279)
T PHA03411 124 ------------------NEKFDVVISNPPFGKINTTDTKDV-FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS 184 (279)
T ss_pred ------------------cCCCcEEEEcCCccccCchhhhhh-hhhccCccccccccHHHHHhhhHheecCCceEEEEEe
Confidence 14699999844 11100 0000 00 00112 26899999999999997776543
No 292
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.13 E-value=1.4e-05 Score=86.72 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=76.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....++|+||+|.|.++..+.+.+|..+++++|+ |.+++.|++...- ...+|++++.+|..+. ..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~~----------- 213 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SY----------- 213 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--CC-----------
Confidence 4457999999999999999999999999999998 7899999887521 1256899999997642 11
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+|+|++-- . +...+. -....+|+++.+.|+|||.+++-
T Consensus 214 ----------------------~~~D~v~~~~--~-----lh~~~~-~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 214 ----------------------PEADAVLFCR--I-----LYSANE-QLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ----------------------CCCCEEEeEh--h-----hhcCCh-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 2369887611 0 000000 01146899999999999999765
No 293
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4.6e-06 Score=78.07 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=80.6
Q ss_pred ccccccchhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEE
Q 004164 43 SFEWYAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWR 121 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~ 121 (771)
-.|.|...+.+..-+...++. ...-.+.+++|+|||.|.++....-.+...|+|+|+.+.+++.+.+.+.+---++.+.
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 345677778887777666654 1224688999999999999966655566789999999999997755544444578999
Q ss_pred EeecCCCCCCCCCccEEEecccccc
Q 004164 122 VMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 122 ~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
++|+.++.+..+.||.++.+-.+..
T Consensus 102 qcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 102 QCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred eeeccchhccCCeEeeEEecCCCCc
Confidence 9999999888899999998776654
No 294
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.12 E-value=2.2e-05 Score=87.87 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||+||+|.|.++.++...+ ..+|++||+++.+++.|++... +..+++..+|..+. .
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l----~----------- 226 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL----N----------- 226 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc----C-----------
Confidence 345689999999999999998876 4599999999999999998763 22478888886442 1
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..||+|+.- ++......-.-..+++.+.+.|+|||.+++..+..
T Consensus 227 ---------------------~~fD~Ivs~--------~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 227 ---------------------GQFDRIVSV--------GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred ---------------------CCCCEEEEe--------CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 469999751 11000000112578999999999999999876544
No 295
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.11 E-value=1.2e-05 Score=86.00 Aligned_cols=94 Identities=13% Similarity=0.224 Sum_probs=71.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC---CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF---VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~---~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.++..|...++. ..+++||+++.+++.|++.+ +++.++++|+.+. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~l----p--------- 146 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRL----P--------- 146 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccC----C---------
Confidence 3467999999999999888887764 37999999999999998875 3578888886542 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+..||+|+.- ++ +.+++.+++.|+|||.|++-.
T Consensus 147 --------------------~~~~sfD~I~~~-~~----------------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 147 --------------------FADQSLDAIIRI-YA----------------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------------------CcCCceeEEEEe-cC----------------CCCHHHHHhhccCCCEEEEEe
Confidence 113679999851 11 123577889999999999754
No 296
>PLN02823 spermine synthase
Probab=98.09 E-value=2e-05 Score=86.25 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=78.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~sFDlVi~ 140 (771)
...+||.||+|.|..+.++.+. +..+|+.+|+++.+++.+++.+.. ..++++++..|.... ....++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999998886 457899999999999988765532 247899999999875 334578999996
Q ss_pred ccccccccCcccchHH-HHHHHH-HHHHccccCeEEEEEE
Q 004164 141 KGGLDALMEPELGHKL-GNQYLS-EVKRLLKSGGKFVCLT 178 (771)
Q Consensus 141 ~~~l~~l~~~~~~~~~-~~~~l~-~i~rvLkpGG~~ii~~ 178 (771)
... +-..... ...+ -..+++ .+++.|+|||++++..
T Consensus 183 D~~-dp~~~~~-~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGP-CYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCc-chhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 521 1110000 0001 236677 8999999999987653
No 297
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.09 E-value=2.3e-05 Score=77.45 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...++|+||+|.|.++..+... ..++++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~ 71 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKF 71 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcC
Confidence 4468999999999999999887 35899999999999999999853 46899999999886
No 298
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.09 E-value=7.1e-05 Score=85.44 Aligned_cols=134 Identities=13% Similarity=0.189 Sum_probs=103.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||+++.|.|+-+..|...+.+ ..|+++|+++.-++..++.+ |+ .++.+...|+..+-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~------- 181 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALP------- 181 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhch-------
Confidence 34568999999999998889888754 48999999999998887665 65 458889999987643322
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc--------------ccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF--------------VEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f--------------~~~~fl~~~~~~L~~ 681 (771)
..||.|++|+-.+. .||..-.+.. +..+.|..+.+.|+|
T Consensus 182 -------------------------~~fD~ILvDaPCSG--~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp 234 (470)
T PRK11933 182 -------------------------ETFDAILLDAPCSG--EGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP 234 (470)
T ss_pred -------------------------hhcCeEEEcCCCCC--CcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46999999995552 2333222221 247889999999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhccc
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFNH 710 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~ 710 (771)
||++|....+-+++..+.++..+.+-++.
T Consensus 235 GG~LVYSTCT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 235 GGTLVYSTCTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHCCC
Confidence 99999999888888888889887766654
No 299
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.08 E-value=7.5e-06 Score=87.02 Aligned_cols=46 Identities=35% Similarity=0.473 Sum_probs=38.9
Q ss_pred CCCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~F 585 (771)
+.+.+|+++|+|+| ++++.|.+.++ ..+|+++|||+.+++.|++-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45679999999999 57888888765 468999999999999999853
No 300
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.08 E-value=1.8e-05 Score=80.81 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=49.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
+.+.+||+||+|+|.+...|...+|..++++||+++.+++.|++.+ ++++++.+|+.+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 3456899999999999999999888889999999999999999875 246788888654
No 301
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.06 E-value=2.8e-05 Score=82.98 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=93.2
Q ss_pred CCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CC
Q 004164 41 GDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SD 117 (771)
Q Consensus 41 ~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~ 117 (771)
+....+|-+....+..+.++. .+.+|||+=|=||.++...+..|..+|++||.|..+++.+++.+.-.+ .+
T Consensus 102 gqktGlFlDqR~nR~~v~~~~------~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 102 GQKTGLFLDQRENRKWVRKYA------KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSTSS-GGGHHHHHHHHHHC------TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCcceEcHHHHhhHHHHHHHc------CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 344567877777777777774 468999999999999999888888899999999999998877665444 46
Q ss_pred cEEEEeecCCC-C--CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 118 MRWRVMDMTSM-Q--FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 118 i~~~~~D~~~l-~--~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+++|+.+. . -..++||+|+.--.-.. .....-.....+++..+.++|+|||.+++++.+
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 89999999763 1 12468999995332221 111111223778899999999999999888766
No 302
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.05 E-value=1.4e-05 Score=82.19 Aligned_cols=105 Identities=13% Similarity=0.077 Sum_probs=72.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||++|+|.|.-+.+|+.+. .+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~- 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD- 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc-
Confidence 34699999999999999998863 58999999999999875544442 2356888899887762110
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
...||.|+- ... +.+-|+. .-..+++.+.++|+|||.+++
T Consensus 111 -------------------------------~~~fD~i~D-~~~------~~~l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 -------------------------------LGPVDAVYD-RAA------LIALPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -------------------------------CCCcCEEEe-chh------hccCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 145888753 100 0011222 246699999999999996443
No 303
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=5e-06 Score=86.66 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=88.6
Q ss_pred ccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecC
Q 004164 47 YAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMT 126 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~ 126 (771)
+..|+.....+... ..+..+||+|||+|..... .....+++.|.+...+.-+++.. . .....+|+.
T Consensus 30 ~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~----~-~~~~~ad~l 95 (293)
T KOG1331|consen 30 AAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSG----G-DNVCRADAL 95 (293)
T ss_pred cCccHHHHHHHhcc------CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCC----C-ceeehhhhh
Confidence 44555554444433 3578999999999987532 23346999999998876553321 1 167889999
Q ss_pred CCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 127 SMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 127 ~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++|+.+.+||.+++..++||+.... .+..+++++.|+|+|||...+..++
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~----RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRE----RRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHH----HHHHHHHHHHHHhcCCCceEEEEeh
Confidence 9999999999999999999997644 4889999999999999998776655
No 304
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.05 E-value=5.1e-05 Score=78.92 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||+||+|+|.+...+.... .+++++|+++.+++.|++.+... ...++++.+|..++....
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~------------- 111 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALES-GLKIDYRQTTAEELAAEH------------- 111 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHHc-CCceEEEecCHHHhhhhc-------------
Confidence 45689999999999988887753 57999999999999999887421 225788888887764331
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
..+||+|++...-. .+ + -...+|+.+.+.|+|+|.+++....+.
T Consensus 112 -------------------~~~fD~Ii~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~l~v~~~~~~ 155 (233)
T PRK05134 112 -------------------PGQFDVVTCMEMLE----HV---P---DPASFVRACAKLVKPGGLVFFSTLNRN 155 (233)
T ss_pred -------------------CCCccEEEEhhHhh----cc---C---CHHHHHHHHHHHcCCCcEEEEEecCCC
Confidence 25799998832101 11 0 125789999999999999998876543
No 305
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.04 E-value=3.1e-05 Score=85.93 Aligned_cols=130 Identities=20% Similarity=0.150 Sum_probs=94.8
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~ 122 (771)
+|-+....+..+.+++ .+.+||++=|=||.++.+.+..|..+||+||.|..+|+.+++.+.-++ .+..|++
T Consensus 201 fFlDqR~~R~~l~~~~------~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 201 FFLDQRDNRRALGELA------AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred eeHHhHHHHHHHhhhc------cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 4444444455555554 378999999999999999999998899999999999998877665444 4578999
Q ss_pred eecCCC----CCCCCCccEEEeccccccccCcc--cchHHHHHHHHHHHHccccCeEEEEEEcCc
Q 004164 123 MDMTSM----QFMDETFDVILDKGGLDALMEPE--LGHKLGNQYLSEVKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 123 ~D~~~l----~~~~~sFDlVi~~~~l~~l~~~~--~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~ 181 (771)
+|+.+. .-...+||+|+.--.-..-.... ........++..+.++|+|||.+++++...
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 999875 12345999999533222111111 011237788999999999999999998763
No 306
>PHA03412 putative methyltransferase; Provisional
Probab=98.03 E-value=2.6e-05 Score=80.45 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=48.0
Q ss_pred CCcEEEEeccccHHHHHHHHhC---CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM---PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~---p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
..+||++|+|+|.++..+.+.. +..+|++||||+.++++|++.+ +++.++.+|...+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~ 109 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTT 109 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcc
Confidence 5699999999999999888764 3569999999999999999764 3588999998754
No 307
>PLN02672 methionine S-methyltransferase
Probab=98.03 E-value=3.9e-05 Score=94.56 Aligned_cols=121 Identities=12% Similarity=0.179 Sum_probs=85.9
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC---C-------------CCCCeeEEEcchHHHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF---T-------------QDKSLKVHITDGIKFVR 605 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~---~-------------~~~r~~v~i~Dg~~~l~ 605 (771)
..+||+||+|+|+++..|...+|..+|++|||+|.++++|++.... . ..+|++++.+|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999999888999999999999999887632 1 12579999999987753
Q ss_pred hhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCC---CCCCCCCCC---------------cCCcCcc
Q 004164 606 EMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVD---SPDSSSGMT---------------CPAADFV 667 (771)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~---s~d~~~g~s---------------~pp~~f~ 667 (771)
.. +.+||+|+...- .++. ..|+ .|...+.
T Consensus 199 ~~--------------------------------~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~ 245 (1082)
T PLN02672 199 DN--------------------------------NIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQ 245 (1082)
T ss_pred cc--------------------------------CCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCcccccc
Confidence 21 136999987220 0000 0010 0112222
Q ss_pred c-----------HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 668 E-----------GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 668 ~-----------~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
. ...+..+.+.|+|||.+++++-.+..+
T Consensus 246 g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~ 284 (1082)
T PLN02672 246 GFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQ 284 (1082)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence 2 567778888999999999999655544
No 308
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.02 E-value=4e-05 Score=80.86 Aligned_cols=121 Identities=22% Similarity=0.317 Sum_probs=84.2
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc---------------
Q 004164 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR--------------- 113 (771)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~--------------- 113 (771)
+..+...|.+++.. .......+||..|||-|+++.+++..|+ .+.|.++|-.|+-...-.+..
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceec
Confidence 44444455555431 1123467999999999999999999999 999999999886422211000
Q ss_pred --------------------------CCCCcEEEEeecCCCCCCC---CCccEEEeccccccccCcccchHHHHHHHHHH
Q 004164 114 --------------------------DRSDMRWRVMDMTSMQFMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (771)
Q Consensus 114 --------------------------~~~~i~~~~~D~~~l~~~~---~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i 164 (771)
...++....+|+.++..++ ++||+|+....+|...+ +-.+++.|
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N-------i~~Yi~tI 188 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN-------IIEYIETI 188 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH-------HHHHHHHH
Confidence 0124666677777664344 79999998766665432 67999999
Q ss_pred HHccccCeEEEEEE
Q 004164 165 KRLLKSGGKFVCLT 178 (771)
Q Consensus 165 ~rvLkpGG~~ii~~ 178 (771)
.++|||||+.|=.-
T Consensus 189 ~~lLkpgG~WIN~G 202 (270)
T PF07942_consen 189 EHLLKPGGYWINFG 202 (270)
T ss_pred HHHhccCCEEEecC
Confidence 99999999777544
No 309
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.00 E-value=2.2e-05 Score=80.33 Aligned_cols=119 Identities=19% Similarity=0.300 Sum_probs=81.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCc
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETF 135 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sF 135 (771)
.+.+.|.. .+....|-|+|||.+.++. .-...|+..|+.+ .+-.++.+||.+.|.++++.
T Consensus 170 ~ii~~ik~--r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 170 VIIRKIKR--RPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHh--CcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCcc
Confidence 44445543 1356789999999998875 2234799999754 23456889999999999999
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh-hcchhhhh-ccCcEEEEee
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV-LGLLFPKF-RFGWKMSVHA 202 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~-~~~l~~~~-~~~w~~~~~~ 202 (771)
|+++..-+|. ..+ +..++.++.|+|++||.+++.+...... ...+...+ ..|+.+....
T Consensus 230 DvaV~CLSLM---gtn-----~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 230 DVAVFCLSLM---GTN-----LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cEEEeeHhhh---ccc-----HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 9999644333 222 7799999999999999999988652211 11233333 3366555443
No 310
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.00 E-value=3.9e-05 Score=81.12 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCcchhH----HHHHhcC------CCeEEEEcCCHHHHHHHHHH-----hh--------------c--CC-
Q 004164 68 PPPQILVPGCGNSRLS----EHLYDAG------FHGITNVDFSKVVISDMLRR-----NV--------------R--DR- 115 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls----~~La~~g------~~~V~~vDiS~~~i~~~~~~-----~~--------------~--~~- 115 (771)
..-+|+-.||++|.-. ..|.+.+ .-+|+|+|+|..+|+.|+.- .. + .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3679999999999544 3333332 14899999999999988631 10 0 00
Q ss_pred --------CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 116 --------SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 116 --------~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+.|...|+.+.++..+.||+|+|..++-++..+. ..+++..++..|+|||++++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~-----q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET-----QERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH-----HHHHHHHHHHHhCCCCEEEEcc
Confidence 247788888887764457899999999999986544 7899999999999999998854
No 311
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.99 E-value=8e-05 Score=77.00 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=94.7
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
+-+|.||+|.|.....++...|+..+.+||+-..++..|-+...-..-++++++.+||.+++.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~------------- 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP------------- 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC-------------
Confidence 5689999999999999999999999999999999998887776321123899999999999998761
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
++..|-|.+- =+||..----.-..++.++|++.+.+.|+|||.|-+ .+....+.+.
T Consensus 117 -----------------~~sl~~I~i~--FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~--aTD~~~y~e~ 172 (227)
T COG0220 117 -----------------DGSLDKIYIN--FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF--ATDNEEYFEW 172 (227)
T ss_pred -----------------CCCeeEEEEE--CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE--EecCHHHHHH
Confidence 3478888873 344432111112569999999999999999999985 3455665544
No 312
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.99 E-value=6.6e-05 Score=83.34 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=85.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.++||.+=+=+|+.+.+..... -.+|+.||++...+++|++.+.+. ...+.+++++|+++|+++...
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence 6889999999998876655543 239999999999999999999553 356799999999999999762
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+||+|--+=-.+..+. ....=--...+..+.++|+|||++++-..++
T Consensus 287 -------------------~g~~fDlIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 -------------------RGEKFDLIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred -------------------cCCcccEEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3568999999752221111000 0000002345678889999999999755444
No 313
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.99 E-value=2.7e-05 Score=81.60 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC-C-C-----CCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM-Q-F-----MDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l-~-~-----~~~sF 135 (771)
....+|||||+++|..+.+++.. + .++|+.+|.++...+.|++.....+ .+++++.+|+.+. + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 35679999999999999999875 2 3589999999999988877766554 6899999998764 2 1 13689
Q ss_pred cEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 136 DVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
|+|+.-+- +.....++..+.++|+|||.+++-
T Consensus 158 D~iFiDad----------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDAD----------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCC----------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 99995321 123668899999999999997764
No 314
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.98 E-value=7.2e-06 Score=91.70 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=77.6
Q ss_pred HHHHHHHHhhCCC-CCCCCCeEEEEcCCcchhHHHHHhcCCCeEE--EEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 52 QLRDPLISLIGAP-TSSPPPQILVPGCGNSRLSEHLYDAGFHGIT--NVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 52 ~l~~~l~~~l~~~-~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~--~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+.+.+.+.+... ....-..+||+|||+|.++..|.+.+...++ .-|..+..++.+.++- -...+-.+--..+
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG----vpa~~~~~~s~rL 175 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG----VPAMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC----cchhhhhhccccc
Confidence 3334455555321 1122357999999999999999998762221 2266666666665542 1122223334578
Q ss_pred CCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 129 QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 129 ~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
||++++||+|.+..++......+ ..+|-++.|+|+|||+|+.+.
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~------g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND------GFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cCCccchhhhhcccccccchhcc------cceeehhhhhhccCceEEecC
Confidence 99999999999988876544332 268999999999999988764
No 315
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.97 E-value=4e-05 Score=79.05 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=79.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||.||+|.|.+...+.... .+++++|+++.+++.|++.+.-....++++..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~------------- 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKG------------- 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCC-------------
Confidence 46789999999999888777654 469999999999999999874322225888889988774321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..+||+|++.-.-. ... -...+|+.+++.|+++|.+++....+
T Consensus 110 -------------------~~~~D~i~~~~~l~----~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 110 -------------------AKSFDVVTCMEVLE----HVP------DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------------CCCccEEEehhHHH----hCC------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 25799998732100 010 12679999999999999998876543
No 316
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.97 E-value=2.3e-05 Score=84.39 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||+||+|.|..+.+|... ..+|++||+++.+++.|++...-. .-++++...|....- .
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~--~-------------- 181 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS--I-------------- 181 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc--c--------------
Confidence 458999999999999998875 369999999999999998876321 125777777764420 1
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+.-. . . ..+++.. -..+++.+.+.|+|||++++
T Consensus 182 ------------------~~~fD~I~~~~--v--l--~~l~~~~--~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 182 ------------------QEEYDFILSTV--V--L--MFLNRER--IPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred ------------------cCCccEEEEcc--h--h--hhCCHHH--HHHHHHHHHHhcCCCcEEEE
Confidence 25799998721 0 0 0001111 25789999999999998665
No 317
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.96 E-value=2.4e-05 Score=81.86 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....++++||+|.|.++.-+...+|+++++++|+ |.|++.|++ .+|++++-+|-. ...+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f---~~~P----------- 157 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF---DPLP----------- 157 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT---TCCS-----------
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH---hhhc-----------
Confidence 3456899999999999999999999999999999 999999998 689999999876 3332
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC--cEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~--Gilv~N 688 (771)
. +|+|++ +.--... |+. --...|+++++.|+|| |.++|.
T Consensus 158 ---------------------~-~D~~~l----~~vLh~~--~d~--~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 158 ---------------------V-ADVYLL----RHVLHDW--SDE--DCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ---------------------S-ESEEEE----ESSGGGS---HH--HHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ---------------------c-ccceee----ehhhhhc--chH--HHHHHHHHHHHHhCCCCCCeEEEE
Confidence 3 999998 1100000 011 1256799999999988 877764
No 318
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.95 E-value=0.00014 Score=78.78 Aligned_cols=114 Identities=12% Similarity=0.132 Sum_probs=75.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+.+.+||.+|+|+|..+..|...++ ..++++||++++|++.|++.+.-. ..-++..+++|..+.+.-...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~-------- 133 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE-------- 133 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc--------
Confidence 3456899999999999998888876 579999999999999998876310 223466688998764332210
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.......+++.+ +. .+.. ++.. ...||+.+++.|+|||.|++.+
T Consensus 134 --------------------~~~~~~~~~~~g--s~---~~~~-~~~e--~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 134 --------------------PAAGRRLGFFPG--ST---IGNF-TPEE--AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred --------------------cccCCeEEEEec--cc---ccCC-CHHH--HHHHHHHHHHhcCCCCEEEEec
Confidence 000122333332 11 1111 1222 2579999999999999999755
No 319
>PRK06202 hypothetical protein; Provisional
Probab=97.94 E-value=0.00012 Score=76.19 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=75.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh----CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC----MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~----~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
..+.+||+||+|+|.++..|... .+..+|++||++|.+++.|++.... +++++++.|+-.. ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~l-~~--------- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---PGVTFRQAVSDEL-VA--------- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---CCCeEEEEecccc-cc---------
Confidence 45678999999999988887754 3456999999999999999988642 3466666655332 10
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
.+.+||+|++- ....- ++++. -..+|+.+.+.++ |.+++|-..+...
T Consensus 126 -----------------------~~~~fD~V~~~----~~lhh--~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~~ 172 (232)
T PRK06202 126 -----------------------EGERFDVVTSN----HFLHH--LDDAE--VVRLLADSAALAR--RLVLHNDLIRSRL 172 (232)
T ss_pred -----------------------cCCCccEEEEC----Ceeec--CChHH--HHHHHHHHHHhcC--eeEEEeccccCHH
Confidence 13579999982 11100 11111 1468999999887 6777777777653
No 320
>PRK05785 hypothetical protein; Provisional
Probab=97.90 E-value=0.00013 Score=75.66 Aligned_cols=89 Identities=10% Similarity=0.062 Sum_probs=65.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+.+||+||+|+|.++..|...+ ..+|++||+++.|++.|++.- ..+++|+... +
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l----p------------ 105 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL----P------------ 105 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--------ceEEechhhC----C------------
Confidence 35789999999999999888886 469999999999999998641 2356776542 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc-cHHHHHHHHHccCCC
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV-EGSFLLTVKDALSEQ 682 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~-~~~fl~~~~~~L~~~ 682 (771)
..+.+||+|++ .. ++ ..+. -+..++.+.+.|+|.
T Consensus 106 -----------------~~d~sfD~v~~----~~---~l----~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 106 -----------------FRDKSFDVVMS----SF---AL----HASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred -----------------CCCCCEEEEEe----cC---hh----hccCCHHHHHHHHHHHhcCc
Confidence 12478999998 11 11 1121 266999999999994
No 321
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.90 E-value=3.5e-05 Score=79.50 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=74.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||++|+|.|.-+.+|..+ +.+|++||++|..++.|.+.-++. ...+++++++|..++-...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc-
Confidence 3469999999999999999886 368999999999999875544442 2467888999988762110
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
...||.|+- .. .-+.+||.. ...+++.+.++|+|||+++
T Consensus 114 -------------------------------~~~fd~v~D----~~--~~~~l~~~~--R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 -------------------------------LADVDAVYD----RA--ALIALPEEM--RERYVQQLAALLPAGCRGL 152 (218)
T ss_pred -------------------------------CCCeeEEEe----hH--hHhhCCHHH--HHHHHHHHHHHcCCCCeEE
Confidence 146888863 10 112223332 4789999999999998533
No 322
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6e-05 Score=75.22 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=83.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C--CCeEEEEcCCHHHHHHHHHHhhcC-----------CCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRD-----------RSD 117 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g--~~~V~~vDiS~~~i~~~~~~~~~~-----------~~~ 117 (771)
.+...+.++|.. ...|+.+.||+|.|+|.++..++.. | ....+|||.-+..++..++...+. ..+
T Consensus 67 ~mha~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 67 HMHATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 444455555541 1158999999999999999888754 2 335599999999998776654322 246
Q ss_pred cEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 118 MRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 118 i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+.++.+|.....-+..+||.|.+.... .+..+++...|++||++++--
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------------cccHHHHHHhhccCCeEEEee
Confidence 889999999887778899999975222 255788889999999988754
No 323
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.88 E-value=9.1e-05 Score=81.03 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=72.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHH---HhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLA---EDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA---~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
..+||+||+|.|.++..+....+. .|++||+++.++..+ +++.+ .+.+++++.+|..+. .
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~l----p---------- 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQL----P---------- 185 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHC----C----------
Confidence 478999999999998888887655 699999999988643 23333 245789988876543 1
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
. ...||+|++ .....-+. --..+|+.+++.|+|||.|++..
T Consensus 186 -------------------~-~~~FD~V~s----~~vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 -------------------A-LKAFDTVFS----MGVLYHRR------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred -------------------C-cCCcCEEEE----CChhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 0 256999997 11000010 12678999999999999999864
No 324
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=0.00013 Score=73.64 Aligned_cols=107 Identities=11% Similarity=0.039 Sum_probs=77.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
..++|++++|+|+++..+..... .+|+.||+|+..++++++.+... -.++++++.+|+.+++.....
T Consensus 50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~----------- 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK----------- 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------
Confidence 46899999999999988888754 38999999999999999887322 135799999999999865431
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHH--ccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKD--ALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~--~L~~~Gilv~Nl 689 (771)
....||+|++|-.=. .-...+.++.+.+ .|+++|++++--
T Consensus 118 ------------------~~~~~dvv~~DPPy~-----------~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 118 ------------------KPTFDNVIYLDPPFF-----------NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred ------------------cCCCceEEEECcCCC-----------CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 113489999953111 1123455555544 589999998754
No 325
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.87 E-value=1.9e-05 Score=86.95 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l 144 (771)
.++..++|+|||.|..+.+++..+...++++|+++.-+......+.... ....++..|+.++||+++.||.+....+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 4677999999999999999988876699999999988876655443322 34556889999999999999999999999
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|.++.. .+++++.|+++|||++++.++.
T Consensus 189 ~~~~~~~-------~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLE-------KVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHH-------HHHHHHhcccCCCceEEeHHHH
Confidence 9988755 9999999999999999987754
No 326
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.87 E-value=0.00011 Score=68.29 Aligned_cols=102 Identities=28% Similarity=0.382 Sum_probs=73.5
Q ss_pred EEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCC--CCCCC-CCccEEEecccc
Q 004164 72 ILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTS--MQFMD-ETFDVILDKGGL 144 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~--l~~~~-~sFDlVi~~~~l 144 (771)
++|+|||+|..+ .+..... ..++++|+++.++......... ... +.+...|... +++.. ..||++.....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999976 3333322 3789999999999874433322 222 6888888886 67776 489999444444
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
++.. ....+.++.+.|+|+|.+++.......
T Consensus 130 ~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--------PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--------HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4432 248899999999999999998876433
No 327
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.85 E-value=2.1e-05 Score=78.59 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CC--CCCc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FM--DETF 135 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~--~~sF 135 (771)
++.++||+||++|.++..+.+.+ ...|+|+|+.+. ...+.+.++++|+.+.. +. .+.|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~ 92 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKF 92 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccccceeeeecccchhhHHHhhhhhccccccCc
Confidence 45899999999999999999987 469999999884 12244555566654421 11 2689
Q ss_pred cEEEeccccccccCcccc----hHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 136 DVILDKGGLDALMEPELG----HKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~----~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
|+|++-++.......... ..+....+.-+...|++||.|++-.+..+... .+....
T Consensus 93 dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~-~~~~~l 152 (181)
T PF01728_consen 93 DLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE-ELIYLL 152 (181)
T ss_dssp SEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH-HHHHHH
T ss_pred ceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH-HHHHHH
Confidence 999998855544332211 12355666677788999999999888765543 444444
No 328
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=6e-05 Score=74.95 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=84.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCee-EEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLK-VHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~-v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+|.||+|+|.--.|.-.. |..+|+.+|.+|.|-++|.+-+.=.....+. ++++||.+.. +++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~----------- 142 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLA----------- 142 (252)
T ss_pred CccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccc-----------
Confidence 3456899999999775553322 6779999999999999999988432334454 8899998752 222
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeC--CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDV--DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATK 697 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~--~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~ 697 (771)
+.+||+|+.-+ .|-.. | ...|++++++|+|||.+++= -.-....
T Consensus 143 --------------------d~s~DtVV~TlvLCSve~------~------~k~L~e~~rlLRpgG~iifi--EHva~~y 188 (252)
T KOG4300|consen 143 --------------------DGSYDTVVCTLVLCSVED------P------VKQLNEVRRLLRPGGRIIFI--EHVAGEY 188 (252)
T ss_pred --------------------cCCeeeEEEEEEEeccCC------H------HHHHHHHHHhcCCCcEEEEE--ecccccc
Confidence 47899998643 22211 1 78899999999999998853 2323333
Q ss_pred HHHHHHHHHhccc
Q 004164 698 DMVISRMKMVFNH 710 (771)
Q Consensus 698 ~~v~~~l~~vF~~ 710 (771)
......+++++..
T Consensus 189 ~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 189 GFWNRILQQVAEP 201 (252)
T ss_pred hHHHHHHHHHhch
Confidence 4444555666664
No 329
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.85 E-value=0.0001 Score=84.05 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|.|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~----------- 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW----------- 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-----------
Confidence 44689999999999999888775 48999999999999999987432235799999999998765320
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+..||+|++|.-. .| +..++++.+.+ |++++++.+-
T Consensus 359 ------------------~~~~~D~vi~dPPr----~G--------~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 ------------------AGQIPDVLLLDPPR----KG--------CAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred ------------------cCCCCCEEEECcCC----CC--------CCHHHHHHHHh-cCCCEEEEEc
Confidence 12469999996421 12 34788887664 8898876653
No 330
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.85 E-value=9.3e-05 Score=71.60 Aligned_cols=100 Identities=16% Similarity=0.250 Sum_probs=69.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
....+||.||+|.|.++..++... . ++++||+++.+++. ..+.....+.... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~-~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~--~------------- 73 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG-F-EVTGVDISPQMIEK----------RNVVFDNFDAQDP--P------------- 73 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT-S-EEEEEESSHHHHHH----------TTSEEEEEECHTH--H-------------
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC-C-EEEEEECCHHHHhh----------hhhhhhhhhhhhh--h-------------
Confidence 466899999999999999887764 3 99999999999998 1111111111111 0
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
.....||+|++- .. ...+ + --..+|+.+++.|+|||++++....+..
T Consensus 74 ------------------~~~~~fD~i~~~--~~--l~~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 74 ------------------FPDGSFDLIICN--DV--LEHL---P---DPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp ------------------CHSSSEEEEEEE--SS--GGGS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ------------------ccccchhhHhhH--HH--Hhhc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 013689999982 11 1111 1 1378999999999999999999877643
No 331
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.84 E-value=4.4e-05 Score=86.77 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=70.7
Q ss_pred CCcEEEEeccccHHHHHHHHhC----CCCcEEEEEcCHHHHHHHHhh---cCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM----PFVGIEAVELDLTMLNLAEDY---FGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~----p~~~i~~VEiD~~v~~vA~~~---Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
..-||+||.|.|.|.++..+.. ...+|.+||-+|..+...++. =++ +++|+|+.+|..++ +.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w--~~~V~vi~~d~r~v--~l------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW--GDKVTVIHGDMREV--EL------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT--TTTEEEEES-TTTS--CH-------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC--CCeEEEEeCcccCC--CC-------
Confidence 4569999999999998877664 346999999999766554332 233 67899999999887 22
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
..++|+||.-+-.+-. -.+ +.++.|....+.|+|+|+++
T Consensus 256 -------------------------pekvDIIVSElLGsfg-------~nE-l~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 -------------------------PEKVDIIVSELLGSFG-------DNE-LSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -------------------------SS-EEEEEE---BTTB-------TTT-SHHHHHHHGGGGEEEEEEEE
T ss_pred -------------------------CCceeEEEEeccCCcc-------ccc-cCHHHHHHHHhhcCCCCEEe
Confidence 2589999987644321 122 44788999999999999988
No 332
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.84 E-value=0.00012 Score=83.54 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEE---
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVIL--- 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi--- 139 (771)
.++.+|||++||+|.-|.+++.. +.+.|+++|+++.-++.+++...+.+ .++.+...|...+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 68899999999999999999886 33589999999999998877776555 56788888887653 2246799999
Q ss_pred -eccccccccCcccc-----------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 -DKGGLDALMEPELG-----------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 -~~~~l~~l~~~~~~-----------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
|.|.-..-.+++.- .....++|....++|||||+++-+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 33322111122110 012678999999999999999998876
No 333
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.84 E-value=8.3e-05 Score=83.02 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=79.4
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.+||++++|.|.++..+....+..+|+++|+||..++.+++...+..-+.++++.+|+.+++.. .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~-------------- 123 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-E-------------- 123 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-c--------------
Confidence 5799999999999988877666568999999999999999987432224567999999998754 2
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+||+|++|.+ |. | .+|+..+...++++|++.+-
T Consensus 124 ------------------~~fD~V~lDP~------Gs--~------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 ------------------RKFDVVDIDPF------GS--P------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ------------------CCCCEEEECCC------CC--c------HHHHHHHHHHhcCCCEEEEE
Confidence 45999999764 11 1 67888888889999999975
No 334
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.83 E-value=0.00012 Score=79.97 Aligned_cols=101 Identities=7% Similarity=0.055 Sum_probs=73.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+.+||++|+|.|.++..|.... .+|++||+++.+++.|++......-++++++.+|+.++.....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~------------- 238 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG------------- 238 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC-------------
Confidence 4789999999999999888853 6899999999999999988622112469999999998864321
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..||+|++|. |..=+..+.++.+.. +.|++++.+-.
T Consensus 239 -------------------~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyvsc 274 (315)
T PRK03522 239 -------------------EVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYSSC 274 (315)
T ss_pred -------------------CCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEEEC
Confidence 4599999962 222123555555444 67777766543
No 335
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.83 E-value=0.00052 Score=73.38 Aligned_cols=128 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred ccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CC
Q 004164 513 YLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QD 590 (771)
Q Consensus 513 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~ 590 (771)
||-..-.+.++...+ +.++||.+=.=+|+...+.... ...+|+.||++...+++|++.+.+. ..
T Consensus 108 FlDqR~nR~~v~~~~-------------~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~ 173 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA-------------KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDL 173 (286)
T ss_dssp -GGGHHHHHHHHHHC-------------TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CC
T ss_pred cHHHHhhHHHHHHHc-------------CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 555556677665532 3479999999999888776544 3348999999999999999998432 23
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCc-cc-
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADF-VE- 668 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f-~~- 668 (771)
++++++.+|+++|+++... ..+||+||+|.-+-.. ..| +.
T Consensus 174 ~~~~~~~~Dvf~~l~~~~~------------------------------~~~fD~IIlDPPsF~k--------~~~~~~~ 215 (286)
T PF10672_consen 174 DRHRFIQGDVFKFLKRLKK------------------------------GGRFDLIILDPPSFAK--------SKFDLER 215 (286)
T ss_dssp TCEEEEES-HHHHHHHHHH------------------------------TT-EEEEEE--SSEES--------STCEHHH
T ss_pred cceEEEecCHHHHHHHHhc------------------------------CCCCCEEEECCCCCCC--------CHHHHHH
Confidence 6899999999999987642 3589999997532211 111 12
Q ss_pred --HHHHHHHHHccCCCcEEEEEeccC
Q 004164 669 --GSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 669 --~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.+.+..+.++|+|||+++.-..+.
T Consensus 216 ~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 216 DYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 345677888899999988655433
No 336
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.81 E-value=0.00014 Score=79.99 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=77.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...++|++|+|+|+++..+... ...++++|+|+.+++.|+..+ |+. .++++.+|+.+. .
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~---~i~~~~~D~~~l----~--------- 243 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIE---DFFVKRGDATKL----P--------- 243 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCC---CCeEEecchhcC----C---------
Confidence 4468999999999887655443 468999999999999998776 542 288999998753 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--cccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--FVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~--f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
.....||+|+.|.--+.. .+. .... -+-..+|+.+++.|+|||.+++-+...
T Consensus 244 --------------------~~~~~~D~Iv~dPPyg~~-~~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 --------------------LSSESVDAIATDPPYGRS-TTA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred --------------------cccCCCCEEEECCCCcCc-ccc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 012579999997421111 001 0111 123789999999999999999866443
No 337
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.80 E-value=0.00049 Score=74.88 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=104.3
Q ss_pred CccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--------CCCeEEEEcCCHHHHHHHHHHhhc
Q 004164 42 DSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--------GFHGITNVDFSKVVISDMLRRNVR 113 (771)
Q Consensus 42 ~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--------g~~~V~~vDiS~~~i~~~~~~~~~ 113 (771)
+...-|.....+...+.+++.. .++.+|||.+||+|.+...+.+. ...+++|+|+++.++..++-.+.-
T Consensus 23 k~~G~~~TP~~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp TSCGGC---HHHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred cccceeehHHHHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4445566677888899999865 56778999999999998877762 345899999999998766543322
Q ss_pred CC---CCcEEEEeecCCCCCC--CCCccEEEeccccccc--cCccc------------chHHHHHHHHHHHHccccCeEE
Q 004164 114 DR---SDMRWRVMDMTSMQFM--DETFDVILDKGGLDAL--MEPEL------------GHKLGNQYLSEVKRLLKSGGKF 174 (771)
Q Consensus 114 ~~---~~i~~~~~D~~~l~~~--~~sFDlVi~~~~l~~l--~~~~~------------~~~~~~~~l~~i~rvLkpGG~~ 174 (771)
.+ ....+...|....+.. ...||+|+++-.+... ..... ....--.++..+.+.|++||++
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred hccccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 22 2345788887665432 4789999987655543 11110 0011234788899999999998
Q ss_pred EEEEcCc----chhhcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEEcCC
Q 004164 175 VCLTLAE----SHVLGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADKENS 225 (771)
Q Consensus 175 ii~~~~~----~~~~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k~~~ 225 (771)
+++.... ......+...+ ...+-..+..++..-=.....+...++.+|...
T Consensus 180 ~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 180 AIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp EEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred eEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 7776431 11111222233 223444556665322223556668888888764
No 338
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.80 E-value=5e-05 Score=76.18 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
..+++.+..++... .-++.++||+-||+|.++.+.+.+|..+|+.||.++.++..+++.....+ .++..++.|....
T Consensus 26 drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 26 DRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp HHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred HHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 34555566666531 02689999999999999999999999999999999999987766554433 3478888886542
Q ss_pred -C---CCCCCccEEEeccccccccCcccchHH-HHHHHHHHH--HccccCeEEEEEEcCc
Q 004164 129 -Q---FMDETFDVILDKGGLDALMEPELGHKL-GNQYLSEVK--RLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 -~---~~~~sFDlVi~~~~l~~l~~~~~~~~~-~~~~l~~i~--rvLkpGG~~ii~~~~~ 181 (771)
. ....+||+|+.--.... .. +..++..+. .+|+++|.+++-....
T Consensus 105 l~~~~~~~~~fDiIflDPPY~~--------~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 105 LLKLAKKGEKFDIIFLDPPYAK--------GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHCTS-EEEEEE--STTS--------CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHhhcccCCCceEEEECCCccc--------chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 1 24689999995322221 12 367777776 7999999988876553
No 339
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.79 E-value=0.0003 Score=73.95 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=86.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-C--CCeEEEEcCCHHHHHHHHHHhhcCC-CCc-EEEEeecCCCC---CCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-G--FHGITNVDFSKVVISDMLRRNVRDR-SDM-RWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g--~~~V~~vDiS~~~i~~~~~~~~~~~-~~i-~~~~~D~~~l~---~~~~sFDlV 138 (771)
...-+||||.||.|+........ + ..+|...|+|+..++..++..++.+ .++ +|.+.|+.+.. --+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999988766654 3 3589999999999998877776655 444 99999998742 123457999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..|.+..+++.+ .+...+.-+.+.+.|||++|...
T Consensus 214 iVsGL~ElF~Dn~----lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDND----LVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHH----HHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999999887644 47788999999999999988764
No 340
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.79 E-value=9.8e-05 Score=80.20 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=71.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH---HHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL---AEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v---A~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
...+||+||+|+|.+...+....+. .|++||+++.++.. ++++.+ .+.++.+...|..+. .
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~l----p--------- 184 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQL----H--------- 184 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHC----C---------
Confidence 4578999999999988777776543 79999999999864 344443 245777777664332 1
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
....||+|+. .....-+ . --..+|+.+++.|+|||.|++...
T Consensus 185 ---------------------~~~~FD~V~s----~gvL~H~----~--dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 185 ---------------------ELYAFDTVFS----MGVLYHR----K--SPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred ---------------------CCCCcCEEEE----cchhhcc----C--CHHHHHHHHHHhcCCCCEEEEEEE
Confidence 0146999987 1110001 0 115799999999999999998643
No 341
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.79 E-value=0.00011 Score=74.46 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=74.6
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEE
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRV 122 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~ 122 (771)
|......-+..+.+.+ .++..|||+.||-|.++..++.. ..+.|+++|++|.+++.+++...... ..+..+.
T Consensus 84 fs~rl~~Er~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~ 158 (200)
T PF02475_consen 84 FSPRLSTERRRIANLV-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVIN 158 (200)
T ss_dssp --GGGHHHHHHHHTC-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEE
T ss_pred EccccHHHHHHHHhcC-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEc
Confidence 3333333444565555 36899999999999999999984 34589999999999997766544333 4688999
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
+|..++.. .+.||-|++...-.. ..+|....+++++||.+-
T Consensus 159 ~D~~~~~~-~~~~drvim~lp~~~-----------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 159 GDAREFLP-EGKFDRVIMNLPESS-----------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp S-GGG----TT-EEEEEE--TSSG-----------GGGHHHHHHHEEEEEEEE
T ss_pred CCHHHhcC-ccccCEEEECChHHH-----------HHHHHHHHHHhcCCcEEE
Confidence 99998754 789999997543332 257888999999998763
No 342
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=97.78 E-value=7e-05 Score=77.22 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=71.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
....+||+||+|+|.++..+... ..+|++||++|.+++.|++.+... ..+++.++++|..+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------------- 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL--------------- 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------------
Confidence 34678999999999999988875 358999999999999999987432 124789998887553
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
..+||+|+. ++... .|+.. -..+++.+.+.+++++++.+
T Consensus 117 ---------------------~~~fD~ii~~~~l~~-------~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 ---------------------CGEFDIVVCMDVLIH-------YPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred ---------------------CCCcCEEEEhhHHHh-------CCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 146999986 22111 01222 25578888888886666554
No 343
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.78 E-value=8.5e-05 Score=77.96 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=91.4
Q ss_pred ccCCCCHhhHHHHHhhcCCCCccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCH
Q 004164 22 LGDFTSKENWDKFFTIRGIGDSFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSK 101 (771)
Q Consensus 22 ~~~f~~~~yWd~~y~~~~~~~~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~ 101 (771)
...|....|-+.+|.... + ...-.+-..-..+.+.+.+.. ....+.++||||||+-.....-+..-+.+|+..|+++
T Consensus 13 ~~~FdP~~Yl~~yY~~~~-~-~~~~~~~~~~~L~~l~~~f~~-g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~ 89 (256)
T PF01234_consen 13 QEEFDPRAYLDTYYSFPS-G-DDAEDEILLFFLKNLHETFSS-GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE 89 (256)
T ss_dssp HHHB-HHHHHHHHHSTSS-S--CHHHHHHHHHHHHHHHHHHT-SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH
T ss_pred HhcCCHHHHHHHhcCCCc-c-CcccchhHHHHHHHHHHHhCc-cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH
Confidence 355777888888886542 1 111000111122233444432 1235679999999996554333333467899999999
Q ss_pred HHHHHHHHHhhcCC-----------------------------CCcE-EEEeecCCCC-CCC-----CCccEEEeccccc
Q 004164 102 VVISDMLRRNVRDR-----------------------------SDMR-WRVMDMTSMQ-FMD-----ETFDVILDKGGLD 145 (771)
Q Consensus 102 ~~i~~~~~~~~~~~-----------------------------~~i~-~~~~D~~~l~-~~~-----~sFDlVi~~~~l~ 145 (771)
.-++...+-....+ ..++ ++..|+.+.+ +.. ..||+|++..+|.
T Consensus 90 ~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE 169 (256)
T PF01234_consen 90 QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLE 169 (256)
T ss_dssp HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHH
T ss_pred hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHH
Confidence 99876654332110 1132 6678888763 332 2599999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
......+ ...++++++.++|||||.|++....
T Consensus 170 ~a~~d~~---~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 170 SACKDLD---EYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HH-SSHH---HHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHcCCHH---HHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 8765433 3889999999999999999997654
No 344
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.77 E-value=0.00013 Score=77.35 Aligned_cols=147 Identities=14% Similarity=0.219 Sum_probs=77.0
Q ss_pred CCCcEEEEecccc-HHHHHHH-HhCCCCcEEEEEcCHHHHHHHHhhcC--CCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG-LLPMFLH-ECMPFVGIEAVELDLTMLNLAEDYFG--FTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~L~-~~~p~~~i~~VEiD~~v~~vA~~~Fg--~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
.|.+|+.||.|.= ..+..|. .+.+...|+.+|+||+.++.|++-.+ +.-+.+++++.+|+.+.-.+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc---------
Confidence 4679999999965 3344444 45677899999999999999988654 123789999999997653322
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhH
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQAT 696 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~ 696 (771)
..||+|++-+--+ |.. =--.+.|+.+.+.++||..+++=-...-..+
T Consensus 191 ------------------------~~~DvV~lAalVg-----~~~----e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~ 237 (276)
T PF03059_consen 191 ------------------------KEYDVVFLAALVG-----MDA----EPKEEILEHLAKHMAPGARLVVRSAHGLRSF 237 (276)
T ss_dssp ---------------------------SEEEE-TT-S-------------SHHHHHHHHHHHS-TTSEEEEEE--GGGGG
T ss_pred ------------------------ccCCEEEEhhhcc-----ccc----chHHHHHHHHHhhCCCCcEEEEecchhhHHH
Confidence 4699999944332 211 1247899999999999999987521111111
Q ss_pred HHHHHH--HHHHhccceEEeeecCC-ccEEEEEecCC
Q 004164 697 KDMVIS--RMKMVFNHLFCLQLEED-VNLVLFGLSSE 730 (771)
Q Consensus 697 ~~~v~~--~l~~vF~~v~~~~~~~~-~N~Vl~a~~~~ 730 (771)
....++ .++ -|..+..+....+ .|.|+|+.+..
T Consensus 238 LYp~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~ 273 (276)
T PF03059_consen 238 LYPVVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQ 273 (276)
T ss_dssp SS----TGGGT-TEEEEEEE---TT---EEEEE----
T ss_pred cCCCCChHHCC-CeEEEEEECCCCCceeEEEEEEecc
Confidence 111111 122 5665555554443 68999998754
No 345
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00012 Score=76.67 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=68.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCC
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDE 133 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 133 (771)
...+...+.. .+++.|||||+|.|.+|..|++.+. .|+++++++.++..++++.. ...+++.+.+|+...+++.-
T Consensus 19 ~~kIv~~a~~---~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 19 IDKIVEAANI---SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHhcCC---CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhh
Confidence 3444444443 5689999999999999999999987 79999999999998877763 55789999999999988743
Q ss_pred -CccEEEeccc
Q 004164 134 -TFDVILDKGG 143 (771)
Q Consensus 134 -sFDlVi~~~~ 143 (771)
.++.|+++-.
T Consensus 94 ~~~~~vVaNlP 104 (259)
T COG0030 94 AQPYKVVANLP 104 (259)
T ss_pred cCCCEEEEcCC
Confidence 6788887643
No 346
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.76 E-value=0.00014 Score=80.90 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=48.3
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.++||++||+|.++..|++. ..+|+++|+++.+++.+++.+...+ .+++|+++|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 57999999999999988876 4589999999999998876654443 4799999998763
No 347
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.76 E-value=0.0001 Score=79.42 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=85.1
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEecccccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
-...+|+|.|.|+.+..+.. -+.+|-++++....+..++.... +.+..+-+|+.+- .|. -|+||.+.+||++.
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 37899999999999999988 46679999999988876655442 5589999999876 443 46999999999998
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+ ..++|++++..|+|||.+++.+..
T Consensus 251 Ded-----cvkiLknC~~sL~~~GkIiv~E~V 277 (342)
T KOG3178|consen 251 DED-----CVKILKNCKKSLPPGGKIIVVENV 277 (342)
T ss_pred hHH-----HHHHHHHHHHhCCCCCEEEEEecc
Confidence 876 889999999999999999999874
No 348
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.75 E-value=0.00013 Score=81.45 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=73.3
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDA 146 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~ 146 (771)
+.+|||++||+|..+..++.. +...|+++|+++.+++.+++.....+ .++.+.++|+..+....+.||+|+..-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 468999999999999999775 55689999999999997765543333 4567899998764221467999986431
Q ss_pred ccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 147 LMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 147 l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
..+ ..++....+.+++||.++++
T Consensus 135 -Gs~-------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSP-------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCc-------HHHHHHHHHHhcCCCEEEEE
Confidence 221 26777777888999998887
No 349
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.75 E-value=0.00015 Score=80.42 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=48.5
Q ss_pred CeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCC
Q 004164 70 PQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSM 128 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l 128 (771)
.+|||++||+|.++..|++.. .+|+++|+++.+++.+++.+...+ .+++++++|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 479999999999999888764 599999999999998876654443 4789999998763
No 350
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00031 Score=75.04 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=80.3
Q ss_pred CeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcC-----CCCcEEEEeecCCC-CCCCCCccEEEecc
Q 004164 70 PQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRD-----RSDMRWRVMDMTSM-QFMDETFDVILDKG 142 (771)
Q Consensus 70 ~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~-----~~~i~~~~~D~~~l-~~~~~sFDlVi~~~ 142 (771)
.+||.||.|.|..+.++.+.. ..+++.||+++.+++.+++-+... .++++.+..|..+. .-..++||+|+.-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999985 579999999999999887665433 27889999998876 21224899999654
Q ss_pred ccccccCcccchHH-HHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKL-GNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~-~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+=. .. +. +.+ -..+++.+++.|+++|+++..+
T Consensus 158 tdp-~g-p~--~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-VG-PA--EALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-CC-cc--cccCCHHHHHHHHHhcCCCcEEEEec
Confidence 333 11 10 001 2589999999999999999883
No 351
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00025 Score=71.65 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCC--CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCCcc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGF--HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDETFD 136 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~--~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~sFD 136 (771)
.++..|+||||-+|.++..+++... ..|+++|+.| | ...+++.++++|++.-+ +....+|
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----M-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----c-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 5789999999999999999988732 3599999988 3 23467999999998753 4455679
Q ss_pred EEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhc
Q 004164 137 VILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFR 193 (771)
Q Consensus 137 lVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~ 193 (771)
+|++-++-..-. +......+...++.-...+|+|||.|++-.+-.... +.++..++
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~-~~~l~~~~ 173 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDF-EDLLKALR 173 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH-HHHHHHHH
Confidence 999655441111 101111246788888889999999999988764443 33444444
No 352
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.72 E-value=0.0002 Score=80.02 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=76.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
..+||++|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|..+++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~------------- 298 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM------------- 298 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC-------------
Confidence 358999999999998888754 36899999999999999988732222379999999999875422
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.+||+|++|- |..=+..++++.+.. ++|++++.+-.
T Consensus 299 -------------------~~~D~vi~DP------------Pr~G~~~~~l~~l~~-~~p~~ivyvsc 334 (374)
T TIGR02085 299 -------------------SAPELVLVNP------------PRRGIGKELCDYLSQ-MAPKFILYSSC 334 (374)
T ss_pred -------------------CCCCEEEECC------------CCCCCcHHHHHHHHh-cCCCeEEEEEe
Confidence 3499999962 222234777777764 78998888653
No 353
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.72 E-value=0.00022 Score=81.57 Aligned_cols=104 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+||++|+|+|.++..|.... .+|++||+++.+++.|++.+....-++++++.+|+.+++.+..
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~------------ 362 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP------------ 362 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh------------
Confidence 34689999999999999888875 5899999999999999988732222469999999998864421
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.....||+|++|.- ..|+ .+.++.+.+ |++++++.+-+
T Consensus 363 -----------------~~~~~fD~Vi~dPP----r~g~---------~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 -----------------WALGGFDKVLLDPP----RAGA---------AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred -----------------hhcCCCCEEEECcC----CcCh---------HHHHHHHHh-cCCCeEEEEEe
Confidence 01246999999531 1122 456666655 68899887654
No 354
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.72 E-value=6.8e-05 Score=76.46 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=72.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+-++.+|+|.|-.+..+..++ -+|+++|++++|+++|++++... .+-..+..-.++++.+.
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g--------------- 96 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG--------------- 96 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC---------------
Confidence 3478999999998888999996 37999999999999999999642 11222333333333321
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc-EEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~ 691 (771)
..++.|+|++ ... -.=|--++|++.+++.|+++| ++++....
T Consensus 97 ------------------~e~SVDlI~~----Aqa-------~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 97 ------------------GEESVDLITA----AQA-------VHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ------------------CCcceeeehh----hhh-------HHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 1367999987 210 112345889999999997755 88876654
No 355
>PRK00536 speE spermidine synthase; Provisional
Probab=97.70 E-value=0.00039 Score=73.40 Aligned_cols=96 Identities=13% Similarity=0.236 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-----cCCCCcEEEEeecCCCCCCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-----RDRSDMRWRVMDMTSMQFMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-----~~~~~i~~~~~D~~~l~~~~~sFDlVi~~ 141 (771)
+...+||-+|.|.|...+++.++.. +|+.||+++.+++.+++-+. -..|+++++.. +. .-..++||+||.-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEEEc
Confidence 3568999999999999999999865 99999999999987765221 13367777652 21 1123689999965
Q ss_pred cccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 142 GGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 142 ~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+ .+ ....+.+++.|+|||.++.-.
T Consensus 147 s~----~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE----PD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC----CC--------hHHHHHHHHhcCCCcEEEECC
Confidence 43 11 267789999999999998864
No 356
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.70 E-value=0.00017 Score=74.70 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=68.1
Q ss_pred HHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCC
Q 004164 57 LISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 57 l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~s 134 (771)
+...+.....++.+.|||+|.|||.+|..|.+.|. +|+++++++.|+....++..... ..+.++.+|+...+++ .
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~ 123 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--R 123 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--c
Confidence 33444444457899999999999999999999987 99999999999999988875444 5688999999988654 6
Q ss_pred ccEEEecc
Q 004164 135 FDVILDKG 142 (771)
Q Consensus 135 FDlVi~~~ 142 (771)
||.++++-
T Consensus 124 fd~cVsNl 131 (315)
T KOG0820|consen 124 FDGCVSNL 131 (315)
T ss_pred cceeeccC
Confidence 99999754
No 357
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.69 E-value=0.00019 Score=75.47 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhc-----CCCCcEEEEeecCCC-CCCCC-CccEEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVR-----DRSDMRWRVMDMTSM-QFMDE-TFDVIL 139 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~-----~~~~i~~~~~D~~~l-~~~~~-sFDlVi 139 (771)
...+||-||.|.|..+.++.+.. ..+|+.||+++.+++.+++-+.. ..++++++..|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57899999999999999999885 57999999999999977654321 247899999999764 22223 899999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
...+-.. .... .-.-..+++.+++.|+|||++++-.
T Consensus 156 ~D~~dp~-~~~~--~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTDPD-GPAP--NLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSSTT-SCGG--GGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCC-CCcc--cccCHHHHHHHHhhcCCCcEEEEEc
Confidence 6332211 1000 0013588999999999999999876
No 358
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.68 E-value=0.00014 Score=72.95 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=78.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...++|++=.|+|++..-...+. ..+|+.||.|+..+.+.++... +...++++++.+|+..++.+...
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 34789999999999987555553 3499999999999999999872 22245799999999999987631
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcc--cHHHHHHHH--HccCCCcEEEEEeccC
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFV--EGSFLLTVK--DALSEQGLFIVNLVSR 692 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~--~~~fl~~~~--~~L~~~Gilv~Nl~~~ 692 (771)
.+.+||+|++|- |-..- -.+.++.+. ..|+++|++++-...+
T Consensus 111 -------------------~~~~fDiIflDP------------PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 -------------------KGEKFDIIFLDP------------PYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -------------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred -------------------cCCCceEEEECC------------CcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 147899999962 22222 266777776 6889999999876544
No 359
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00037 Score=72.25 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEc----chHHHHHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHIT----DGIKFVREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~----Dg~~~l~~~~~~~~~~~ 615 (771)
++..+|.+|+|.|+++.++.+.+|..+|++||.+++.+.+|.+.. .+....++.|+.- |...- .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~---~-------- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE---H-------- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc---c--------
Confidence 344799999999999999999999999999999999999998876 2223567777733 22111 0
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeC---CCC-----CCCCCCCcCCcCcc--------cHHHHHHHHHcc
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV---DSP-----DSSSGMTCPAADFV--------EGSFLLTVKDAL 679 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~---~s~-----d~~~g~s~pp~~f~--------~~~fl~~~~~~L 679 (771)
....+++|+|+..- .+. +++.+..-|+.++. -..++..+.+.|
T Consensus 217 ---------------------~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~L 275 (328)
T KOG2904|consen 217 ---------------------PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRML 275 (328)
T ss_pred ---------------------ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhc
Confidence 01236788888621 000 11222222333222 235677888999
Q ss_pred CCCcEEEEEeccC--ChhHHHH-HHHHHHHhccceEEeeecCCccEEEEE
Q 004164 680 SEQGLFIVNLVSR--SQATKDM-VISRMKMVFNHLFCLQLEEDVNLVLFG 726 (771)
Q Consensus 680 ~~~Gilv~Nl~~~--~~~~~~~-v~~~l~~vF~~v~~~~~~~~~N~Vl~a 726 (771)
.|||.+.+++..+ ++..... +.......|..+....-..+.+.++..
T Consensus 276 q~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i 325 (328)
T KOG2904|consen 276 QPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII 325 (328)
T ss_pred ccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence 9999999999844 4443322 223333334333333323344555544
No 360
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.66 E-value=0.00035 Score=75.99 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=49.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEE-cchHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHI-TDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i-~Dg~~ 602 (771)
+...++|+||+|+|++...|....+..+++++||||..++.|++..... ..++++++. .|.-.
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 4668999999999988777777777889999999999999999988542 245788865 34333
No 361
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.65 E-value=0.00013 Score=73.27 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++.++|+||+|.|--+.||.... ..|++||+++.-++.+++.-.- ++-.++....|-.++ .
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~----~------------ 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDF----D------------ 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCB----S------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhc----c------------
Confidence 46799999999999999999985 6899999999988877655311 122377777774332 1
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
-...||+|+..+.- +-++++.+ +..++.+++.++|||++++...
T Consensus 91 ------------------~~~~yD~I~st~v~------~fL~~~~~--~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 91 ------------------FPEEYDFIVSTVVF------MFLQRELR--PQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -------------------TTTEEEEEEESSG------GGS-GGGH--HHHHHHHHHTEEEEEEEEEEEE
T ss_pred ------------------ccCCcCEEEEEEEe------ccCCHHHH--HHHHHHHHhhcCCcEEEEEEEe
Confidence 12579999874311 22234433 7789999999999999888653
No 362
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00057 Score=68.44 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=95.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
.+..+||.||.|-|....|+++.-|. +-..+|..|.|++--|++- -.+.++|.+..|==.+.+.++.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~g-w~ek~nViil~g~WeDvl~~L~----------- 166 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWG-WREKENVIILEGRWEDVLNTLP----------- 166 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcc-cccccceEEEecchHhhhcccc-----------
Confidence 46789999999999999999999776 7788999999999988884 3355666666654445555554
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE-EEeccCChhHHH
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI-VNLVSRSQATKD 698 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv-~Nl~~~~~~~~~ 698 (771)
++.||=|+.|.++.-+. -..+|.+.+-++|+|+|+|. +|..+-+.....
T Consensus 167 --------------------d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~ 216 (271)
T KOG1709|consen 167 --------------------DKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFY 216 (271)
T ss_pred --------------------ccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhhh
Confidence 35699999999876321 13788999999999999998 587776655433
Q ss_pred HHHHHHHHhccceEEeeec
Q 004164 699 MVISRMKMVFNHLFCLQLE 717 (771)
Q Consensus 699 ~v~~~l~~vF~~v~~~~~~ 717 (771)
.++..+..+++.
T Consensus 217 -------~vy~~lV~iev~ 228 (271)
T KOG1709|consen 217 -------DVYKILVMIEVA 228 (271)
T ss_pred -------hhhheeEEEEee
Confidence 355555555543
No 363
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.63 E-value=0.00027 Score=76.78 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC-C--CCcEEEE-eecCCCC----CCCCCccEE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD-R--SDMRWRV-MDMTSMQ----FMDETFDVI 138 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~-~--~~i~~~~-~D~~~l~----~~~~sFDlV 138 (771)
+..++||||||+|.+...|+.. ...+++|+|+++.+++.+++..... + .++.+.. .|..++. .+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4689999999999888777665 2348999999999999887665444 2 3566643 3333321 246789999
Q ss_pred Eecccccccc
Q 004164 139 LDKGGLDALM 148 (771)
Q Consensus 139 i~~~~l~~l~ 148 (771)
+++-.++.-.
T Consensus 194 vcNPPf~~s~ 203 (321)
T PRK11727 194 LCNPPFHASA 203 (321)
T ss_pred EeCCCCcCcc
Confidence 9998877643
No 364
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.62 E-value=3.7e-05 Score=69.75 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=48.3
Q ss_pred EEEeccccHHHHHHHHhCCCC---cEEEEEcCH---HHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 546 VVIGLGAGLLPMFLHECMPFV---GIEAVELDL---TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 546 LviGlG~G~l~~~L~~~~p~~---~i~~VEiD~---~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
|.||...|..+.++...++.. ++.+||.++ ..-++.++ .++ .++++++.+|..+++....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 578988887777777665543 699999999 55555554 333 4679999999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||+|++|.+.... .....|+.+..+|+|||++++.
T Consensus 67 --------------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 --------------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --------------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 2679999999854321 2366789999999999999975
No 365
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.62 E-value=4.5e-05 Score=77.16 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-----CCcEEEEeecCCC--CCCCCCccEEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-----SDMRWRVMDMTSM--QFMDETFDVIL 139 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-----~~i~~~~~D~~~l--~~~~~sFDlVi 139 (771)
+.+.+|||...|-|..+...+++|..+|+.++-++.+++.+ ..| ... ..++.+.+|+.+. .|+|++||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-~lN-PwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-KLN-PWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-ccC-CCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 46899999999999999999999988999999999999744 332 111 3578999999886 68999999999
Q ss_pred eccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 140 DKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 140 ~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-.-.=..+.. .---+.+..+++|+|||||+++--.
T Consensus 211 HDPPRfS~Ag----eLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 211 HDPPRFSLAG----ELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eCCCccchhh----hHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 3211111110 0014688999999999999986543
No 366
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.61 E-value=3.1e-05 Score=78.03 Aligned_cols=102 Identities=19% Similarity=0.341 Sum_probs=79.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
+.-.++|.||||+|.+.--|+..- .+++.|||+..|++.|.+.-.+ + ++.++|+..|++...
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y---D--~L~~Aea~~Fl~~~~----------- 185 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY---D--TLYVAEAVLFLEDLT----------- 185 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch---H--HHHHHHHHHHhhhcc-----------
Confidence 446789999999999988888886 4899999999999999887554 2 567789999988654
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEE-eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILII-DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..+||+|.. |+.. +.+.+ +.++-.+...|+|||+|++.+-
T Consensus 186 --------------------~er~DLi~AaDVl~--YlG~L---------e~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 186 --------------------QERFDLIVAADVLP--YLGAL---------EGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred --------------------CCcccchhhhhHHH--hhcch---------hhHHHHHHHhcCCCceEEEEec
Confidence 478999974 3311 11112 6788899999999999998764
No 367
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.61 E-value=0.0006 Score=73.53 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=51.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~ 603 (771)
...+||.||.|.|.++..|.... .+|++||+|+.+++.+++.+... ..++++++.+|++++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 34689999999999999998864 47999999999999999987422 246899999999885
No 368
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.60 E-value=0.00032 Score=77.99 Aligned_cols=101 Identities=14% Similarity=0.214 Sum_probs=81.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.+||++..|.|..+.-.....+ ..+|+++|+||..++.+++...+..-+.++++.+|+..++....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~------------ 112 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRN------------ 112 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhC------------
Confidence 36899999999988877666643 35899999999999999998855333468999999999987643
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
.+||+|++|-+.. | .+|+..+.+.++++|++.+-
T Consensus 113 --------------------~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 113 --------------------RKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred --------------------CCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 5699999976432 1 47999999999999999975
No 369
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.57 E-value=0.00046 Score=75.06 Aligned_cols=59 Identities=20% Similarity=0.088 Sum_probs=46.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-----CCCCeeEEEcchH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-----QDKSLKVHITDGI 601 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-----~~~r~~v~i~Dg~ 601 (771)
...+||+||+|+|.++..|... ..+|++||+++.|++.|++.+.-. ...+++++.+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3568999999999999888876 358999999999999999986321 1245778888853
No 370
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.0005 Score=67.99 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=69.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.+.|+++|+|+|.|..-..-..+. +|.+||+||+.+++|++.-+= ...++++.++|..++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc------------------
Confidence 356999999999998766666554 999999999999999988642 245799999998887
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHcc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDAL 679 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L 679 (771)
..++|.+|.+ .+. |.- -.+ -+.+||+.+.+.-
T Consensus 106 ------------------~~~~dtvimN--PPF---G~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 ------------------RGKFDTVIMN--PPF---GSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred ------------------CCccceEEEC--CCC---ccc--ccc-CCHHHHHHHHHhh
Confidence 2568888883 222 211 223 6788998887764
No 371
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.52 E-value=0.00064 Score=72.70 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEE--EEeec
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRW--RVMDM 125 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~--~~~D~ 125 (771)
|..+...|.++-...+.....+|||+|||+|..+..+.+. ...+++++|.|+.|++.++.... ..+.... ...+.
T Consensus 15 YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~-~~~~~~~~~~~~~~ 93 (274)
T PF09243_consen 15 YAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR-AGPNNRNAEWRRVL 93 (274)
T ss_pred HHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh-cccccccchhhhhh
Confidence 4555555555543322235579999999999877655543 45689999999999986655443 3322111 11111
Q ss_pred CCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcch
Q 004164 126 TSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESH 183 (771)
Q Consensus 126 ~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~ 183 (771)
.....+-...|+|++.++|.-+.+.. +..+++.+.+.+.+ .+++++.+.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~-----r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAA-----RAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchH-----HHHHHHHHHHhccC--cEEEEcCCChH
Confidence 11111112349999999999988722 67888888777766 99999988654
No 372
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.0009 Score=73.46 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCC---------------------------------C-------eE
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGF---------------------------------H-------GI 94 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~---------------------------------~-------~V 94 (771)
..++.+... .++..++|.-||+|.+..+.+-.+. . .+
T Consensus 181 aAil~lagw---~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 181 AAILLLAGW---KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHcCC---CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 344444443 4567999999999999988776531 1 37
Q ss_pred EEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCCCccEEEeccccccccCcc-cchHHHHHHHHHHHHccccC
Q 004164 95 TNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPE-LGHKLGNQYLSEVKRLLKSG 171 (771)
Q Consensus 95 ~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~-~~~~~~~~~l~~i~rvLkpG 171 (771)
+|+|+++.+|+.|+..+...+ ..|+|.++|+..++-+-+.+|+||++-.-.--...+ ....+...+.+.+++.++..
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 799999999998877665555 569999999999864447899999876544322222 11235677777888888888
Q ss_pred eEEEEEEcC
Q 004164 172 GKFVCLTLA 180 (771)
Q Consensus 172 G~~ii~~~~ 180 (771)
+++++++..
T Consensus 338 s~~v~tt~e 346 (381)
T COG0116 338 SRYVFTTSE 346 (381)
T ss_pred ceEEEEccH
Confidence 899888743
No 373
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.51 E-value=0.0006 Score=75.91 Aligned_cols=113 Identities=11% Similarity=0.137 Sum_probs=76.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGN 622 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~ 622 (771)
.++|++++|.|+++..|.... .+|++||+++.+++.|++......-++++++.+|+.++++........
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~--------- 276 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF--------- 276 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc---------
Confidence 469999999999999888876 389999999999999999863322247999999999998764310000
Q ss_pred ccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 623 EITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
.... .......+||+||+|-- ..| +..+.++.+.+ +++++.+-.
T Consensus 277 -------~~~~-~~~~~~~~~D~v~lDPP----R~G--------~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 277 -------NRLK-GIDLKSYNFSTIFVDPP----RAG--------LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred -------cccc-cccccCCCCCEEEECCC----CCC--------CcHHHHHHHHc---cCCEEEEEe
Confidence 0000 00000236999999631 123 34777777765 678777654
No 374
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.51 E-value=0.0007 Score=75.05 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=53.1
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHh
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVRE 606 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~ 606 (771)
.++|++|+|.|.++..|.... .+|++||+++.+++.|++......-++++++.+|+.+++..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 469999999999999999886 38999999999999999987432224699999999999865
No 375
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.51 E-value=0.00027 Score=75.88 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 52 QLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 52 ~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
-+...+.+.+.. .++..+||.+||+|..+..+++.. .+.|+|+|.++.+++.+++++.. ..+++++++|+.++.
T Consensus 6 Vll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 6 VLLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLK 81 (296)
T ss_pred ccHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHH
Confidence 343445555543 578899999999999999999883 36899999999999999887755 567999999988763
Q ss_pred --CCC--CCccEEEec
Q 004164 130 --FMD--ETFDVILDK 141 (771)
Q Consensus 130 --~~~--~sFDlVi~~ 141 (771)
.++ .++|.|+..
T Consensus 82 ~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 82 EVLAEGLGKVDGILLD 97 (296)
T ss_pred HHHHcCCCccCEEEEC
Confidence 111 268887753
No 376
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.50 E-value=0.001 Score=70.64 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ 129 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~ 129 (771)
.+.+...+.+.+.. .++..|||+|+|+|.+|..|.+.+ .+++++|+++.+++.++++.. ..++++++..|+.+++
T Consensus 15 ~~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-hcccceeeecchhccc
Confidence 45667777777764 578999999999999999999998 699999999999988877664 5678999999999987
Q ss_pred CCC---CCccEEEeccccccccCcccchHHHHHHHHHHHHcccc
Q 004164 130 FMD---ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKS 170 (771)
Q Consensus 130 ~~~---~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkp 170 (771)
..+ .....|+++-.. ++ -..++.++...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~i---------s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-NI---------SSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-TG---------HHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-cc---------hHHHHHHHhhcccc
Confidence 554 345566665433 22 22556666653343
No 377
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.50 E-value=0.00044 Score=71.51 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=47.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITD 599 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~D 599 (771)
...+||+||+|+|.++..|.... .+++++|+++.+++.|++.+.-. ..+++.++.+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 45689999999999988888765 46999999999999999987422 22578999998
No 378
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.49 E-value=0.00032 Score=70.33 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=75.3
Q ss_pred eEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCCccEEEecccccccc
Q 004164 71 QILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDETFDVILDKGGLDALM 148 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~ 148 (771)
+++|||+|.|.-+..|+=. +..+++.+|....-+..++.-....+ .++++++..+++ +....+||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcC---
Confidence 8999999999988888765 44589999999987776654443333 579999999998 44568999999865443
Q ss_pred CcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 149 EPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 149 ~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+..++.-+.++|++||++++.--
T Consensus 127 --------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 127 --------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp --------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred --------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 45889999999999999988763
No 379
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.48 E-value=0.0012 Score=63.79 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.+...||.+|-|+|.++..+..+ .+...++++|.+++-+..-.+.|. .++++.||++.-=....
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~---------- 111 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLG---------- 111 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHh----------
Confidence 44568999999999998866655 466799999999999999888873 35699999987532332
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
+..+..||.||.-+ +...+ | -=.+-+.|+.+..+|..||.++.=-.+
T Consensus 112 ------------------e~~gq~~D~viS~l----Pll~~--P--~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 112 ------------------EHKGQFFDSVISGL----PLLNF--P--MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ------------------hcCCCeeeeEEecc----ccccC--c--HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 12357899999833 11111 1 113678999999999999999865554
No 380
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.47 E-value=0.0014 Score=66.69 Aligned_cols=126 Identities=20% Similarity=0.305 Sum_probs=88.0
Q ss_pred ccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-C-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 45 EWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-G-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 45 ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
.|......+...+..-+.....+++.+||-+|..+|....++.+- | -+.|+++++|+.....+..- ++.++|+--+.
T Consensus 50 ~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~l-a~~R~NIiPIl 128 (229)
T PF01269_consen 50 VWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNL-AKKRPNIIPIL 128 (229)
T ss_dssp EE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHH-HHHSTTEEEEE
T ss_pred ecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHH-hccCCceeeee
Confidence 477777777777777766556688999999999999999999987 5 46899999999888777544 35678999999
Q ss_pred eecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 123 MDMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 123 ~D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.|+.... .--+..|+|+..- ..++ ..+-+..+....||+||.+++.--+
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DV-----aQp~----Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDV-----AQPD----QARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE------SSTT----HHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCCChHHhhcccccccEEEecC-----CChH----HHHHHHHHHHhhccCCcEEEEEEec
Confidence 9998631 1235899999532 1122 2668888999999999999886543
No 381
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.46 E-value=0.00073 Score=74.89 Aligned_cols=127 Identities=14% Similarity=0.222 Sum_probs=75.0
Q ss_pred HHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---
Q 004164 54 RDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--- 129 (771)
Q Consensus 54 ~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--- 129 (771)
...+.+++.. .++ +|||+-||.|.++..|++... +|+|||+++.+++.|++.+...+ .+++|+++++.++.
T Consensus 186 ~~~~~~~l~~---~~~-~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 186 YEQALEWLDL---SKG-DVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred HHHHHHHhhc---CCC-cEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 3344555553 333 899999999999999988755 99999999999998877665544 68999998876531
Q ss_pred -------------CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 130 -------------FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 130 -------------~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
.....+|+|+.. +|-.|. -+.++..+.+ + .+++-++..+..+...+.. +..+|
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilD-------PPR~G~--~~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~~-L~~~y 326 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILD-------PPRAGL--DEKVIELIKK---L-KRIVYVSCNPATLARDLKI-LKEGY 326 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE----------TT-S--CHHHHHHHHH---S-SEEEEEES-HHHHHHHHHH-HHCCE
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEc-------CCCCCc--hHHHHHHHhc---C-CeEEEEECCHHHHHHHHHH-HhhcC
Confidence 112357888731 111111 1133444433 2 3677777665555555443 33467
Q ss_pred EEE
Q 004164 197 KMS 199 (771)
Q Consensus 197 ~~~ 199 (771)
.+.
T Consensus 327 ~~~ 329 (352)
T PF05958_consen 327 KLE 329 (352)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 382
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00026 Score=74.17 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=53.0
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...||.||-|.|+|+..|.+.. .+|++||||+.++.+-++.+. ..++++|+.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 5789999999999999999997 469999999999999999997 357899999999987
No 383
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0027 Score=63.30 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=86.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC
Q 004164 51 PQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM 128 (771)
Q Consensus 51 ~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l 128 (771)
..+++.+..++... --.+.++||+=+|+|.++.+.+.+|...++.||.+..++...++.....+ .+..++.+|+...
T Consensus 27 drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~ 105 (187)
T COG0742 27 DRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRA 105 (187)
T ss_pred hHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHH
Confidence 34555666666420 03689999999999999999999999999999999999987766655444 6788888888843
Q ss_pred --CCCC-CCccEEEeccccccccCcccchHHH--HHHHHH--HHHccccCeEEEEEEcCc
Q 004164 129 --QFMD-ETFDVILDKGGLDALMEPELGHKLG--NQYLSE--VKRLLKSGGKFVCLTLAE 181 (771)
Q Consensus 129 --~~~~-~sFDlVi~~~~l~~l~~~~~~~~~~--~~~l~~--i~rvLkpGG~~ii~~~~~ 181 (771)
.... +.||+|+.--.++. ... ...+.. -..+|+|+|.++|-.-..
T Consensus 106 L~~~~~~~~FDlVflDPPy~~--------~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 106 LKQLGTREPFDLVFLDPPYAK--------GLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHhcCCCCcccEEEeCCCCcc--------chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1222 25999996544431 112 222333 457899999988877553
No 384
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00095 Score=72.76 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=95.0
Q ss_pred cccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEe
Q 004164 46 WYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVM 123 (771)
Q Consensus 46 w~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~ 123 (771)
|......-+..+.+... ++.+|||+=||-|.++..++..|...|+++|++|.+++.+++....++ ..+..+++
T Consensus 171 Fsprl~~ER~Rva~~v~-----~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~g 245 (341)
T COG2520 171 FSPRLSTERARVAELVK-----EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILG 245 (341)
T ss_pred ECCCchHHHHHHHhhhc-----CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEec
Confidence 33333344445666653 689999999999999999999988669999999999997766554433 34889999
Q ss_pred ecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 124 DMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 124 D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
|.......-+.||-|++...-.+ ..++....+.+++||.+.+-++.++..
T Consensus 246 D~rev~~~~~~aDrIim~~p~~a-----------~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 246 DAREVAPELGVADRIIMGLPKSA-----------HEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred cHHHhhhccccCCEEEeCCCCcc-----------hhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 99998765588999997654432 377888889999999999988876543
No 385
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.44 E-value=0.00041 Score=69.18 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=52.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
+...|||+||+|.|.|..+|.+. .+++..+||||++-+..|.+. .+.|+++|.-+-+....
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP 72 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC
Confidence 34589999999999999999997 578999999999988887655 36899999999887765
No 386
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.40 E-value=0.0011 Score=79.76 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=76.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-------CC-----CCcEEEEEcCHH---HHHHH-----------Hhh----c----
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-------MP-----FVGIEAVELDLT---MLNLA-----------EDY----F---- 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-------~p-----~~~i~~VEiD~~---v~~vA-----------~~~----F---- 585 (771)
....+|+++|.|+|.-...+... -| .+++..||.+|. -+.-+ ++. -
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 44578999999999432222221 13 369999998762 11111 111 0
Q ss_pred CCC----CCC--CeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004164 586 GFT----QDK--SLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659 (771)
Q Consensus 586 g~~----~~~--r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~ 659 (771)
|+. ++. ++++++||+.+.+.+.. .++|+|++|.|++..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~--------------------------------~~~d~~~lD~FsP~~---- 179 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLD--------------------------------ARADAWFLDGFAPAK---- 179 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhcc--------------------------------ccccEEEeCCCCCcc----
Confidence 210 122 56799999999998864 469999999999853
Q ss_pred CcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 660 TCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 660 s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
.+++++.++|..++++++|+|+|+
T Consensus 180 ---np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 180 ---NPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ---ChhhccHHHHHHHHHHhCCCCEEE
Confidence 688999999999999999999999
No 387
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.37 E-value=0.00036 Score=70.91 Aligned_cols=106 Identities=24% Similarity=0.357 Sum_probs=68.4
Q ss_pred CCCCcEEEEeccccHHHH-HHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH-HHHHhhccCCcccccc
Q 004164 540 GKSVKAVVIGLGAGLLPM-FLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-KFVREMKSSSATDEMS 617 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~-~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~-~~l~~~~~~~~~~~~~ 617 (771)
....++|..|.|-|-.+. +|...+ -+|+.||..+..++.|+++++- ...++.-+..=|+ +|..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P------------ 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTP------------ 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG---------------
T ss_pred CCcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccC------------
Confidence 346789999999998776 444444 5899999999999999999974 2344444444444 3321
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc---HHHHHHHHHccCCCcEEEE--EeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE---GSFLLTVKDALSEQGLFIV--NLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~---~~fl~~~~~~L~~~Gilv~--Nl~~~ 692 (771)
+..+||+|-+=-. ..+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 119 ---------------------~~~~YDlIW~QW~-----------lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 119 ---------------------EEGKYDLIWIQWC-----------LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ----------------------TT-EEEEEEES------------GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred ---------------------CCCcEeEEEehHh-----------hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 1368999988221 223333 4689999999999999997 76544
No 388
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.35 E-value=0.0014 Score=69.44 Aligned_cols=131 Identities=17% Similarity=0.273 Sum_probs=76.1
Q ss_pred ccccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHH-Hhc-CC-CeEEEEcCCHHHHHHHHHHhhc---CCC
Q 004164 43 SFEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHL-YDA-GF-HGITNVDFSKVVISDMLRRNVR---DRS 116 (771)
Q Consensus 43 ~~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~L-a~~-g~-~~V~~vDiS~~~i~~~~~~~~~---~~~ 116 (771)
.|.+|..|..+.+.=...+.........+|+=||||.=-+|..+ ++. +. ..|+++|+++.+++.+++-... ...
T Consensus 95 ~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 95 SFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp TSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 45566767666654444444311112359999999988777444 433 32 4799999999999977655441 236
Q ss_pred CcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 117 DMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 117 ~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
+++|+++|..+.+.+-..||+|+.......-..+ -.+++.++.+.++||..+++-+.
T Consensus 175 ~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~------K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 175 RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEP------KEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp SEEEEES-GGGG-GG----SEEEE-TT-S----S------HHHHHHHHHHHS-TTSEEEEEE-
T ss_pred CeEEEecchhccccccccCCEEEEhhhcccccch------HHHHHHHHHhhCCCCcEEEEecc
Confidence 8999999998876656789999976555422112 46999999999999999888753
No 389
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.35 E-value=0.0014 Score=61.48 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=64.0
Q ss_pred CCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccH
Q 004164 590 DKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEG 669 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~ 669 (771)
.-++++++||+.+.++++. ..+|+|+.|.+++.. .+++.+.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~--------------------------------~~~Da~ylDgFsP~~-------nPelWs~ 70 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLD--------------------------------ARFDAWYLDGFSPAK-------NPELWSE 70 (124)
T ss_dssp TEEEEEEES-HHHHHHHB---------------------------------T-EEEEEE-SS-TTT-------SGGGSSH
T ss_pred CEEEEEEEcHHHHHHHhCc--------------------------------ccCCEEEecCCCCcC-------CcccCCH
Confidence 3468999999999999975 679999999999854 6789999
Q ss_pred HHHHHHHHccCCCcEEEEEeccCChhHHHHHHHHHHHhccceEEeeecCCccEEEEEec
Q 004164 670 SFLLTVKDALSEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQLEEDVNLVLFGLS 728 (771)
Q Consensus 670 ~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~~~~~N~Vl~a~~ 728 (771)
++|+.+.++++++|+|+ ..+.... |-..|.++==.|...+-...-.+.+.|.+
T Consensus 71 e~~~~l~~~~~~~~~l~--Tys~a~~----Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 71 ELFKKLARLSKPGGTLA--TYSSAGA----VRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHHEEEEEEEE--ES--BHH----HHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHHhCCCcEEE--EeechHH----HHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 99999999999999988 3333333 44455555334555554344556666653
No 390
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.35 E-value=0.0012 Score=64.66 Aligned_cols=130 Identities=19% Similarity=0.339 Sum_probs=80.5
Q ss_pred CCCcEEEEeccccHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHEC-MPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~-~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
...+||.||+|-|.+..-|++. |+. .+++||.++..+++|+.-- ++ ++.+++.+.|-.+= +
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~--~n~I~f~q~DI~~~--~---------- 131 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGF--SNEIRFQQLDITDP--D---------- 131 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCC--CcceeEEEeeccCC--c----------
Confidence 3449999999999886666654 443 6999999999999986543 44 34588887776542 1
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEE----EeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILI----IDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi----~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....+||+|+ .|+-+--+.. |...+ .-++..+.+.|+|+|+|++--..-
T Consensus 132 ---------------------~~~~qfdlvlDKGT~DAisLs~d~----~~~r~--~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 132 ---------------------FLSGQFDLVLDKGTLDAISLSPDG----PVGRL--VVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ---------------------ccccceeEEeecCceeeeecCCCC----cccce--eeehhhHhhccCCCcEEEEEecCc
Confidence 1125688776 2321110000 11111 457889999999999999865332
Q ss_pred ChhHHHHHHHHHHHh-ccceEEee
Q 004164 693 SQATKDMVISRMKMV-FNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~~~l~~v-F~~v~~~~ 715 (771)
. .+.+++.+..- |..++.++
T Consensus 185 T---~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 185 T---KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred c---HHHHHHHHhcCCeEEEEeec
Confidence 2 33445555444 54444433
No 391
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.33 E-value=0.0015 Score=66.91 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=73.7
Q ss_pred CCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCCCCCC-ccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQFMDET-FDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~~~~s-FDlVi~~~~l~ 145 (771)
+.+++|||.|.|.=+..|+-. ...++|-+|....-+...+.-..+.+ +|++++++-++++.-. .. ||+|.+..+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeehccc
Confidence 589999999999999888733 33469999998877766654443434 6799999999987532 22 99999865433
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
+..++.-+..++++||.++..-
T Consensus 147 -----------L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 147 -----------LNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred -----------hHHHHHHHHHhcccCCcchhhh
Confidence 3478888999999999976544
No 392
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.30 E-value=0.002 Score=65.61 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCH----HHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDL----TMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~----~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||-||...|+..+++..... .-.|-+||..| .++++|++.- ++--+++||..--+ ..
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~------NIiPIl~DAr~P~~-Y~------ 138 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP------NIIPILEDARHPEK-YR------ 138 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST------TEEEEES-TTSGGG-GT------
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC------ceeeeeccCCChHH-hh------
Confidence 3457999999999999999998775 66999999999 7788888774 46668899984311 11
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC--
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR-- 692 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~-- 692 (771)
.--..+|+|+.|+--++. ..-+..+++..|++||.+++-+-.+
T Consensus 139 -----------------------~lv~~VDvI~~DVaQp~Q------------a~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 139 -----------------------MLVEMVDVIFQDVAQPDQ------------ARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp -----------------------TTS--EEEEEEE-SSTTH------------HHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred -----------------------cccccccEEEecCCChHH------------HHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 012579999999976643 2668889999999999888765332
Q ss_pred -----ChhHHHHHHHHHHHh-ccce--EEeeecCCccEEEEEe
Q 004164 693 -----SQATKDMVISRMKMV-FNHL--FCLQLEEDVNLVLFGL 727 (771)
Q Consensus 693 -----~~~~~~~v~~~l~~v-F~~v--~~~~~~~~~N~Vl~a~ 727 (771)
..+.....+++|++. |.-+ ..++.-+..+.+++|.
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 234456668888874 7643 3444334556666664
No 393
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.29 E-value=0.00077 Score=75.02 Aligned_cols=99 Identities=9% Similarity=0.091 Sum_probs=75.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC-CCCCCccEEEecccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ-FMDETFDVILDKGGL 144 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~-~~~~sFDlVi~~~~l 144 (771)
+.+|||+.||+|..+..++.. |...|+++|+++.+++.+++...... .++.+.+.|+..+- .....||+|...- +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 368999999999999999887 66799999999999998766554333 35788888887652 1235799998532 1
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
..+ ..++..+.+.+++||.+.++.
T Consensus 124 ---Gs~-------~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTP-------APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCc-------HHHHHHHHHhcccCCEEEEEe
Confidence 222 278899999999999988764
No 394
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00092 Score=66.93 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC--CCcEEEEEcCHHHHHHHHhhcCC----------CCCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP--FVGIEAVELDLTMLNLAEDYFGF----------TQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p--~~~i~~VEiD~~v~~vA~~~Fg~----------~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+.|.||.|+|.|+........ +...++||.-|++++.+++.... -+..++.+++|||+.--.+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-- 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-- 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc--
Confidence 456899999999998776665443 33449999999999999988622 1346899999999875222
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
..+||.|.+-+..+ +..+.+-+.|+++|-+++-
T Consensus 160 -------------------------------~a~YDaIhvGAaa~----------------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 -------------------------------QAPYDAIHVGAAAS----------------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred -------------------------------cCCcceEEEccCcc----------------ccHHHHHHhhccCCeEEEe
Confidence 36799999954333 3346677789999988876
Q ss_pred ec
Q 004164 689 LV 690 (771)
Q Consensus 689 l~ 690 (771)
+.
T Consensus 193 ~~ 194 (237)
T KOG1661|consen 193 VG 194 (237)
T ss_pred ec
Confidence 64
No 395
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.27 E-value=0.00049 Score=68.72 Aligned_cols=143 Identities=20% Similarity=0.214 Sum_probs=86.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcch-----HHHHHhhccCCcc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDG-----IKFVREMKSSSAT 613 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg-----~~~l~~~~~~~~~ 613 (771)
+...+||+||.+.|+.+.++.++. +..+|.+||+-+. . +-+.+..+.+|. .+.+.+..
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~-----~~~~~~~i~~d~~~~~~~~~i~~~~----- 85 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------D-----PLQNVSFIQGDITNPENIKDIRKLL----- 85 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------G-----S-TTEEBTTGGGEEEEHSHHGGGSH-----
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc------c-----cccceeeeecccchhhHHHhhhhhc-----
Confidence 356899999999999999999987 5679999999988 1 112233333443 23333321
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC---CcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP---AADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p---p~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
.....++|+|+.|+-..- .|.... ...-+....+..+...|++||.||+-+.
T Consensus 86 -----------------------~~~~~~~dlv~~D~~~~~--~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 -----------------------PESGEKFDLVLSDMAPNV--SGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp -----------------------GTTTCSESEEEE---------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred -----------------------cccccCcceeccccccCC--CCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 011268999999982221 111000 0111223344566677999999999887
Q ss_pred cCChhHHHHHHHHHHHhccceEEeeecC---CccEEEE
Q 004164 691 SRSQATKDMVISRMKMVFNHLFCLQLEE---DVNLVLF 725 (771)
Q Consensus 691 ~~~~~~~~~v~~~l~~vF~~v~~~~~~~---~~N~Vl~ 725 (771)
..... . .++..++..|..+..++... ..|+.++
T Consensus 141 ~~~~~-~-~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 141 KGPEI-E-ELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp SSTTS-H-HHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cCccH-H-HHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 64443 3 78999999999998887643 3455443
No 396
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.26 E-value=0.00054 Score=73.21 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|+|.++..|....+ +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 446899999999999999999864 89999999999999998774 36899999999875
No 397
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0036 Score=69.46 Aligned_cols=115 Identities=22% Similarity=0.178 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcCC---CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEE
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAGF---HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g~---~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlV 138 (771)
+.++.+|||+.++.|.=|.+++.... ..|+++|+++.-+..+.+...+.+ .++.....|...++ ...+.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 37899999999999999999988732 246999999999988877776655 45678888876553 222359999
Q ss_pred Eec------cccccccCcccc---------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 139 LDK------GGLDALMEPELG---------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 139 i~~------~~l~~l~~~~~~---------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.- |++.--++.... .....++|....++|||||+++.+|.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 942 333211111100 123778999999999999999999877
No 398
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0032 Score=61.82 Aligned_cols=128 Identities=21% Similarity=0.312 Sum_probs=86.9
Q ss_pred CCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
+.=+|.||+|.|....||.... |+....+.||+|...+.-++---. +..++.+++.|-..-+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~~-------------- 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLRN-------------- 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhcc--------------
Confidence 4558999999999999999866 677889999999999886555432 345688898987776655
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCCCC--C---CCCc-----CCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDV-DSPDSS--S---GMTC-----PAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d~~--~---g~s~-----pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
++.|++++.- +-..+. . ++.. -...=+...+|..+..+|+|.|+|.++.
T Consensus 109 --------------------~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 109 --------------------ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred --------------------CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 4588888722 000000 0 0000 0001136778899999999999999998
Q ss_pred ccCChhHHHHHHHHHHH
Q 004164 690 VSRSQATKDMVISRMKM 706 (771)
Q Consensus 690 ~~~~~~~~~~v~~~l~~ 706 (771)
..++.. +.++..++.
T Consensus 169 ~~~N~p--~ei~k~l~~ 183 (209)
T KOG3191|consen 169 LRANKP--KEILKILEK 183 (209)
T ss_pred hhhcCH--HHHHHHHhh
Confidence 776654 345555543
No 399
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0044 Score=68.79 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=102.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATD 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~ 614 (771)
....+||++..+-|+=+..|.+.+++ ..|+++|+|+.=++..+... |+ ..+.++..|+..+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~nv~~~~~d~~~~~~~~~------ 225 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---RNVIVVNKDARRLAELLP------ 225 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---CceEEEeccccccccccc------
Confidence 34578999999999888888888865 35699999998888877765 54 338899999987754432
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-Cc-------------CcccHHHHHHHHHccC
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AA-------------DFVEGSFLLTVKDALS 680 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~-------------~f~~~~fl~~~~~~L~ 680 (771)
...+||.|++|+-.+. .|+.-- |. .=+..++|..+.+.|+
T Consensus 226 ------------------------~~~~fD~iLlDaPCSg--~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk 279 (355)
T COG0144 226 ------------------------GGEKFDRILLDAPCSG--TGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK 279 (355)
T ss_pred ------------------------ccCcCcEEEECCCCCC--CcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1236999999985542 222111 11 1246788999999999
Q ss_pred CCcEEEEEeccCChhHHHHHHHHHHHhccce
Q 004164 681 EQGLFIVNLVSRSQATKDMVISRMKMVFNHL 711 (771)
Q Consensus 681 ~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v 711 (771)
|||.||.-..+..++..+.++..+-+-.+.+
T Consensus 280 ~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 280 PGGVLVYSTCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred CCCEEEEEccCCchhcCHHHHHHHHHhCCCc
Confidence 9999999999999998899998777666553
No 400
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.21 E-value=0.0013 Score=68.02 Aligned_cols=135 Identities=9% Similarity=0.083 Sum_probs=87.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC------------CCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT------------QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~------------~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+||+.|+|-|.-..+|+.+. .+|++||+++.-++.+.+-.++. ...+++++++|.+++=.. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~-~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI-A 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc-c
Confidence 34699999999999999999874 58999999999999986643321 235788999988875110 0
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~N 688 (771)
....+||+|.- . +..|--+.=....+.+.+.++|+|||.+++-
T Consensus 120 -----------------------------~~~~~fD~VyD----r----a~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 120 -----------------------------NNLPVFDIWYD----R----GAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -----------------------------cccCCcCeeee----e----hhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 01246898653 1 1112222234678999999999999977754
Q ss_pred eccCCh----hHHHHHHHHHHHhccceEEee
Q 004164 689 LVSRSQ----ATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 689 l~~~~~----~~~~~v~~~l~~vF~~v~~~~ 715 (771)
....+. .....--..+++.|...+.+.
T Consensus 163 ~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 163 VMEHDKKSQTPPYSVTQAELIKNFSAKIKFE 193 (226)
T ss_pred EEecCCCCCCCCCcCCHHHHHHhccCCceEE
Confidence 443221 111111356677776554443
No 401
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0027 Score=65.96 Aligned_cols=111 Identities=17% Similarity=0.285 Sum_probs=84.7
Q ss_pred HHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCC
Q 004164 55 DPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQF 130 (771)
Q Consensus 55 ~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~ 130 (771)
..+..++.- .|+.+|||-|.|+|.++..+++. +-++++-.|+.+.-.+++++.+++.+ .++++..-|+....|
T Consensus 95 a~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 456666665 79999999999999999999987 34789999999998888888887655 689999999998765
Q ss_pred C--CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCe-EEEEEEcC
Q 004164 131 M--DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGG-KFVCLTLA 180 (771)
Q Consensus 131 ~--~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG-~~ii~~~~ 180 (771)
. +..+|.|+. + ++.+- .++-....+||.+| ++++.+.+
T Consensus 172 ~~ks~~aDaVFL----D-lPaPw-------~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 172 LIKSLKADAVFL----D-LPAPW-------EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred cccccccceEEE----c-CCChh-------hhhhhhHHHhhhcCceEEeccHH
Confidence 4 467888884 2 23332 44566666888765 66666655
No 402
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.19 E-value=0.0042 Score=66.79 Aligned_cols=160 Identities=13% Similarity=0.113 Sum_probs=114.9
Q ss_pred CccchhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhc---CC
Q 004164 512 GYLASSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYF---GF 587 (771)
Q Consensus 512 ~~L~~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~F---g~ 587 (771)
+++...=..+|+.+..|.. ....+||++..|-|+=+..+...++ ...|+++|+++.-+...+.++ |.
T Consensus 65 G~~~vQd~sS~l~~~~L~~---------~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~ 135 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---------QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV 135 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---------TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-
T ss_pred CcEEecccccccccccccc---------cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3443333445555544432 3446799999999988778888876 569999999999988877765 54
Q ss_pred CCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---
Q 004164 588 TQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA--- 664 (771)
Q Consensus 588 ~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~--- 664 (771)
..+.++..|+..+..... ...||.|++|+-.+.. +-+.-.|.
T Consensus 136 ---~~v~~~~~D~~~~~~~~~-------------------------------~~~fd~VlvDaPCSg~-G~i~r~p~~~~ 180 (283)
T PF01189_consen 136 ---FNVIVINADARKLDPKKP-------------------------------ESKFDRVLVDAPCSGL-GTIRRNPDIKW 180 (283)
T ss_dssp ---SSEEEEESHHHHHHHHHH-------------------------------TTTEEEEEEECSCCCG-GGTTTCTTHHH
T ss_pred ---ceEEEEeecccccccccc-------------------------------ccccchhhcCCCccch-hhhhhccchhh
Confidence 568888899999876654 2469999999955532 11111121
Q ss_pred ----------CcccHHHHHHHHHcc----CCCcEEEEEeccCChhHHHHHHHHHHHhccceEEee
Q 004164 665 ----------DFVEGSFLLTVKDAL----SEQGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQ 715 (771)
Q Consensus 665 ----------~f~~~~fl~~~~~~L----~~~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~ 715 (771)
..+..+.|+.+.+.| +|||.+|.-..+-.++..+.+++.+-+.++.....+
T Consensus 181 ~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 181 RRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp HE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred cccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 134678899999999 999999999988888888889988877777655444
No 403
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.14 E-value=0.0021 Score=69.15 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=55.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMP-FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
...+++.++|+|.-+..+...+| ..+|.++|.||.+++.|++.+. +.++++++.+|..++.....
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~--~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK--PFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc--cCCcEEEEeCCHHHHHHHHH
Confidence 35799999999999999998886 6799999999999999998763 24689999999999876554
No 404
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0031 Score=62.91 Aligned_cols=124 Identities=20% Similarity=0.289 Sum_probs=95.4
Q ss_pred cccccchhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEE
Q 004164 44 FEWYAEWPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRV 122 (771)
Q Consensus 44 ~ew~~~~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~ 122 (771)
-+|......+...++.-++..+..++.+||-+|..+|....++.+- |.+.|++|++|+.+...+...+ ..++|+--+.
T Consensus 52 R~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a-~~R~Ni~PIL 130 (231)
T COG1889 52 REWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA-EKRPNIIPIL 130 (231)
T ss_pred eeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH-HhCCCceeee
Confidence 3587777788877877777667789999999999999999999987 6568999999999988776665 4568888899
Q ss_pred eecCCCC---CCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 123 MDMTSMQ---FMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 123 ~D~~~l~---~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
.|+.... +--+..|+|+.- +..++ ..+-+..++...||+||+.++.
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D-----VAQp~----Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD-----VAQPN----QAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe-----cCCch----HHHHHHHHHHHhcccCCeEEEE
Confidence 9987632 122458888842 12222 2667888999999999976664
No 405
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.11 E-value=0.002 Score=66.53 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC------------CCCCCeeEEEcchHHHHHhh
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF------------TQDKSLKVHITDGIKFVREM 607 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~------------~~~~r~~v~i~Dg~~~l~~~ 607 (771)
....+|||.|+|-|.-..+|..+. .+|++||+++..++.|.+.-+. ..+.+++++++|..++=...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345689999999999999999873 5999999999999998544332 13467899999998852111
Q ss_pred ccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE-
Q 004164 608 KSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI- 686 (771)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv- 686 (771)
.++||+|.= -.....+ |+ =....+.+.++++|+|+|.++
T Consensus 114 --------------------------------~g~fD~iyD----r~~l~Al---pp-~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 --------------------------------VGKFDLIYD----RTFLCAL---PP-EMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp --------------------------------HHSEEEEEE----CSSTTTS----G-GGHHHHHHHHHHCEEEEEEEEE
T ss_pred --------------------------------cCCceEEEE----ecccccC---CH-HHHHHHHHHHHHHhCCCCcEEE
Confidence 247999963 1111222 22 367889999999999999833
Q ss_pred EEeccC----ChhHHHHHHHHHHHhccceEEe
Q 004164 687 VNLVSR----SQATKDMVISRMKMVFNHLFCL 714 (771)
Q Consensus 687 ~Nl~~~----~~~~~~~v~~~l~~vF~~v~~~ 714 (771)
+-+... ......---+.+.+.|..-+.+
T Consensus 154 i~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i 185 (218)
T PF05724_consen 154 ITLEYPQGEMEGPPFSVTEEEVRELFGPGFEI 185 (218)
T ss_dssp EEEES-CSCSSSSS----HHHHHHHHTTTEEE
T ss_pred EEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEE
Confidence 323211 1122222235666667654443
No 406
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0042 Score=61.98 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=78.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcC-CCCCCCeeEEEcchHHHHHhhccCCcccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFG-FTQDKSLKVHITDGIKFVREMKSSSATDEMSVV 619 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg-~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~ 619 (771)
...++|++=.|+|+|..-..... ...++.||.|.....+.++... +....+.+++..|+..+++....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~---------- 111 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT---------- 111 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC----------
Confidence 35789999999999987666654 3499999999999999999973 32367899999999999888651
Q ss_pred cccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc-HHHHHH--HHHccCCCcEEEEEe
Q 004164 620 HGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE-GSFLLT--VKDALSEQGLFIVNL 689 (771)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~-~~fl~~--~~~~L~~~Gilv~Nl 689 (771)
...||+|++|- +- ...++. ..-+.. -...|+|+|++++--
T Consensus 112 --------------------~~~FDlVflDP--Py--------~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 112 --------------------REPFDLVFLDP--PY--------AKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred --------------------CCcccEEEeCC--CC--------ccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 12599999963 11 122332 222233 245689999999765
No 407
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0025 Score=72.26 Aligned_cols=125 Identities=13% Similarity=0.144 Sum_probs=82.1
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCCC---C
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQF---M 131 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~~---~ 131 (771)
...+++.. .++.++||+=||.|.++..|++... +|+|+|+++.+++.|++.++..+ .|++|..+|++++.. .
T Consensus 284 ~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLEL---AGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhh---cCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc
Confidence 34444443 5678999999999999999997655 99999999999998876665544 569999999998742 2
Q ss_pred CCCccEEEeccccccccCcccchHHHH-HHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGN-QYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGW 196 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~-~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w 196 (771)
...||.|+.. .+-.+ +. .+++.+.+. +|-.++++ +..+..+.+.+......++
T Consensus 360 ~~~~d~VvvD-------PPR~G---~~~~~lk~l~~~-~p~~IvYV-SCNP~TlaRDl~~L~~~gy 413 (432)
T COG2265 360 GYKPDVVVVD-------PPRAG---ADREVLKQLAKL-KPKRIVYV-SCNPATLARDLAILASTGY 413 (432)
T ss_pred cCCCCEEEEC-------CCCCC---CCHHHHHHHHhc-CCCcEEEE-eCCHHHHHHHHHHHHhCCe
Confidence 3578999942 22211 22 445555544 44444444 4444444444444334444
No 408
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.10 E-value=0.0033 Score=73.53 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=62.9
Q ss_pred ccchhHHHHHHHHhhCCC-C---CCCCCeEEEEcCCcchhHHHHHhcC---------CCeEEEEcCCHHHHHHHHHHhhc
Q 004164 47 YAEWPQLRDPLISLIGAP-T---SSPPPQILVPGCGNSRLSEHLYDAG---------FHGITNVDFSKVVISDMLRRNVR 113 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~~-~---~~~~~~ILDiGCG~G~ls~~La~~g---------~~~V~~vDiS~~~i~~~~~~~~~ 113 (771)
|.....+...+..++... . .....+|||+|||+|.+...+++.. ..+++++|+++.++..++..+..
T Consensus 6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~ 85 (524)
T TIGR02987 6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE 85 (524)
T ss_pred cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence 344556667677665321 0 0134699999999999998887641 14789999999999877665433
Q ss_pred CC-CCcEEEEeecCCC-----CCCCCCccEEEecccccc
Q 004164 114 DR-SDMRWRVMDMTSM-----QFMDETFDVILDKGGLDA 146 (771)
Q Consensus 114 ~~-~~i~~~~~D~~~l-----~~~~~sFDlVi~~~~l~~ 146 (771)
.. ..+...+.|.... .-..+.||+|+.+-..--
T Consensus 86 ~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 86 FALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred cCCCCceeeecccccccccccccccCcccEEEeCCCccc
Confidence 22 2344454443321 111257999998765543
No 409
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.09 E-value=0.0015 Score=66.13 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=44.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|.|.+...+.... ...+++||+++.+++.|++. +++++.+|..+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~ 67 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEG 67 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhc
Confidence 34589999999999988887664 45789999999999998752 367888887653
No 410
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.08 E-value=0.0027 Score=64.12 Aligned_cols=129 Identities=22% Similarity=0.239 Sum_probs=88.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcc---hHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITD---GIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~D---g~~~l~~~~~~~~~~~~~ 617 (771)
.+.=||+||+|+|.....|.... ...+.|||+|.|+++|.+ +.-+. .++.+| |+.|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~--~e~eg---dlil~DMG~Glpf-------------- 108 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE--RELEG---DLILCDMGEGLPF-------------- 108 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH--hhhhc---CeeeeecCCCCCC--------------
Confidence 45569999999998888887764 589999999999999986 22122 233333 2222
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEE-e----CCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccC
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILII-D----VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D----~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
....||.+|. - +.+.|.+. ..+.---..|+..+..+|+.++-.|+.+...
T Consensus 109 ---------------------rpGtFDg~ISISAvQWLcnA~~s~----~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 ---------------------RPGTFDGVISISAVQWLCNADKSL----HVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred ---------------------CCCccceEEEeeeeeeecccCccc----cChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 2467887763 1 12333322 2333334679999999999999999999999
Q ss_pred ChhHHHHHH-HHHHHhccceEEee
Q 004164 693 SQATKDMVI-SRMKMVFNHLFCLQ 715 (771)
Q Consensus 693 ~~~~~~~v~-~~l~~vF~~v~~~~ 715 (771)
+.+..+++. +.+++=|.--..++
T Consensus 164 n~~q~d~i~~~a~~aGF~GGlvVd 187 (270)
T KOG1541|consen 164 NEAQIDMIMQQAMKAGFGGGLVVD 187 (270)
T ss_pred chHHHHHHHHHHHhhccCCceeee
Confidence 888888777 55666687533333
No 411
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.07 E-value=0.0016 Score=66.04 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCC---CCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQF---MDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~---~~~sFDlVi~~~~l~ 145 (771)
..++|||||=+...... ..+.-+|+.||+++ . .-.+.+.|+.+.|. ++++||+|.+.-+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-----~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-----Q---------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC-----C---------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 47999999865443321 23444799999987 1 12346778888765 467999999999999
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeE-----EEEEEcC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGK-----FVCLTLA 180 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~-----~ii~~~~ 180 (771)
+++++. .+-.++..++++|+|+|. ++++...
T Consensus 116 fVP~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 116 FVPDPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred eCCCHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999876 378999999999999999 7776543
No 412
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.06 E-value=0.0032 Score=62.60 Aligned_cols=125 Identities=14% Similarity=0.196 Sum_probs=72.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHH-HhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFV-REMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l-~~~~~~~~~~~ 615 (771)
....+||.||.|.|...+.+....+..+|++-|+++ +++..+...... ...++.+..-|=-+-+ .+..
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~------- 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL------- 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH-------
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc-------
Confidence 456899999999999988888886667999999999 888887775331 2456666554311101 1111
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
+..+||+||. +|-.. ..-.-+.+++.++.+|+++|.+++-.-.|...
T Consensus 116 -----------------------~~~~~D~Ila----sDv~Y------~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~ 162 (173)
T PF10294_consen 116 -----------------------EPHSFDVILA----SDVLY------DEELFEPLVRTLKRLLKPNGKVLLAYKRRRKS 162 (173)
T ss_dssp -----------------------S-SSBSEEEE----ES--S-------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG
T ss_pred -----------------------ccccCCEEEE----ecccc------hHHHHHHHHHHHHHHhCCCCEEEEEeCEecHH
Confidence 1257999996 22111 11234889999999999999877666556443
Q ss_pred HHHHHHHHHHH
Q 004164 696 TKDMVISRMKM 706 (771)
Q Consensus 696 ~~~~v~~~l~~ 706 (771)
. ..+++++++
T Consensus 163 ~-~~F~~~~~k 172 (173)
T PF10294_consen 163 E-QEFFDRLKK 172 (173)
T ss_dssp G-CHHHHHH--
T ss_pred H-HHHHHHhhh
Confidence 3 446777665
No 413
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.05 E-value=0.0031 Score=61.84 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=57.3
Q ss_pred EEEEcCHHHHHHHHhhcCCC---CCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeE
Q 004164 569 EAVELDLTMLNLAEDYFGFT---QDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDI 645 (771)
Q Consensus 569 ~~VEiD~~v~~vA~~~Fg~~---~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDv 645 (771)
++||+++.|+++|++..... ..++++++++|+.+. . ..+..||+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l----p-----------------------------~~~~~fD~ 47 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL----P-----------------------------FDDCEFDA 47 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC----C-----------------------------CCCCCeeE
Confidence 47999999999998765321 134799999998764 1 11367999
Q ss_pred EEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC
Q 004164 646 LIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS 693 (771)
Q Consensus 646 Ii~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~ 693 (771)
|++-. ....+. --..+|+.+++.|+|||.|++--++..
T Consensus 48 v~~~~----~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 48 VTMGY----GLRNVV------DRLRAMKEMYRVLKPGSRVSILDFNKS 85 (160)
T ss_pred EEecc----hhhcCC------CHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 99721 111111 126899999999999999987655543
No 414
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.05 E-value=0.0026 Score=66.18 Aligned_cols=62 Identities=27% Similarity=0.260 Sum_probs=51.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHH
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~ 603 (771)
..+--||.||-|+|.|+.-|.+.. .+|.+||+||.|+.--.+.+ |.+...+++|+++|.+..
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 445669999999999999999886 58999999999987555555 777778999999998764
No 415
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.04 E-value=0.0012 Score=70.02 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||+|.|.++..|.... .+|++||+|+.+++.+++.+.- .++++++.+|+.++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 34689999999999999999883 4899999999999999998853 46899999999764
No 416
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.03 E-value=0.00011 Score=72.82 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
...++||+|+|.|..+..++.. +.+|.+.+.|..|+.+.+++.-.--..+.|.+ .+-+||+|.+-..|+-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~ynVl~~~ew~~--------t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYNVLTEIEWLQ--------TDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCceeeehhhhh--------cCceeehHHHHHHHHhh
Confidence 4579999999999999988765 45899999999888877654311111122221 23469999999999877
Q ss_pred cCcccchHHHHHHHHHHHHcccc-CeEEEEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKS-GGKFVCLT 178 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkp-GG~~ii~~ 178 (771)
.++- ++|+.++.+|+| +|+.|+.-
T Consensus 183 ~~p~-------kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 FDPF-------KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred cChH-------HHHHHHHHHhccCCCcEEEEE
Confidence 6654 899999999999 88877643
No 417
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0018 Score=64.21 Aligned_cols=117 Identities=17% Similarity=0.210 Sum_probs=82.6
Q ss_pred HHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhh-cCCCCcEEEEeecCCCCCCCCC
Q 004164 57 LISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNV-RDRSDMRWRVMDMTSMQFMDET 134 (771)
Q Consensus 57 l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~s 134 (771)
+.+++.. +..-.+.+|||+|.|+|..+..-+..|...|++.|+.+-.+. +.+.|. ..+-.+.+...|... .+..
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~-ai~lNa~angv~i~~~~~d~~g---~~~~ 142 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQ-AIRLNAAANGVSILFTHADLIG---SPPA 142 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHH-HhhcchhhccceeEEeeccccC---CCcc
Confidence 4455543 223467899999999999999999999889999999976665 445443 344567888777765 4678
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEE-EEEcCcchhh
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFV-CLTLAESHVL 185 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~i-i~~~~~~~~~ 185 (771)
||+|+....++.-.. ..+++. +.+.|+..|.-+ +-+...+++.
T Consensus 143 ~Dl~LagDlfy~~~~-------a~~l~~-~~~~l~~~g~~vlvgdp~R~~lp 186 (218)
T COG3897 143 FDLLLAGDLFYNHTE-------ADRLIP-WKDRLAEAGAAVLVGDPGRAYLP 186 (218)
T ss_pred eeEEEeeceecCchH-------HHHHHH-HHHHHHhCCCEEEEeCCCCCCCc
Confidence 999999888886432 346677 777777666544 4445545443
No 418
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.0091 Score=58.83 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEe-ecCCC--------CCCCCCc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVM-DMTSM--------QFMDETF 135 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~-D~~~l--------~~~~~sF 135 (771)
.|+++|||+||.+|.++....+. +.+-|.|||+-. . ...+.+.++++ |+++. ..++...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh-----~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH-----I-----EPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee-----c-----cCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 57999999999999999877776 346799999754 1 12234555555 77663 1567789
Q ss_pred cEEEecccccccc----CcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 136 DVILDKGGLDALM----EPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 136 DlVi~~~~l~~l~----~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
|+|++...-.+-. +....-++...++--....++|+|.|+|-.+...
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 9999754332211 1111112345566666778899999999888643
No 419
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.98 E-value=0.0021 Score=65.61 Aligned_cols=104 Identities=14% Similarity=0.107 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHh---h----c---CCCCcEEEEeecCCCCCCC--
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRN---V----R---DRSDMRWRVMDMTSMQFMD-- 132 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~---~----~---~~~~i~~~~~D~~~l~~~~-- 132 (771)
..+++..+|||||.|......+-. ++...+||++.+...+.+.... . . ...++.+..+|+.+.++..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 368899999999999998766644 7777999999998876554321 1 1 1245778888887654211
Q ss_pred -CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 133 -ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 133 -~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
..-|+|+++.+... ++ ....|.+....||+|-++|..
T Consensus 120 ~s~AdvVf~Nn~~F~---~~-----l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTCFD---PD-----LNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TTT----HH-----HHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccccC---HH-----HHHHHHHHHhcCCCCCEEEEC
Confidence 34699999876542 22 445667788889998886643
No 420
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.97 E-value=0.0017 Score=68.52 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=52.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+||.|.|.++..|....+ .+++||+|+.+++.+++.++. .++++++.+|+.++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 457899999999999999999875 599999999999999998864 57899999999764
No 421
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.96 E-value=0.0067 Score=61.96 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=83.9
Q ss_pred EEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCCC-CccEEEeccccccc
Q 004164 72 ILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMDE-TFDVILDKGGLDAL 147 (771)
Q Consensus 72 ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~~-sFDlVi~~~~l~~l 147 (771)
|.||||--|.+..+|.+.|. ..++++|+++.-++.+++.....+ .++++..+|-.+. ++.+ ..|.|+..|+-..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~l 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGEL 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHHH
Confidence 68999999999999999976 579999999999999988776655 5799999996552 2333 37999987765543
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCC
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQ 205 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~ 205 (771)
+..+|.+....++....|++............+ ...+|.+.-..+-.
T Consensus 80 ---------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L--~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 80 ---------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWL--YENGFEIIDEDLVE 126 (205)
T ss_dssp ---------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH--HHTTEEEEEEEEEE
T ss_pred ---------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH--HHCCCEEEEeEEEe
Confidence 568888888888877788887665444322221 24488888777643
No 422
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0085 Score=61.17 Aligned_cols=101 Identities=16% Similarity=0.048 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCC------CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSM------QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l------~~~~~sFDl 137 (771)
...+.||||.=||..+..++.. .-+.|+++|+++...+...+..+..+ ..|++++++..+. ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4689999997777666666554 33689999999999987765544333 6799999988653 245689999
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++. ++- ......++.++.+++|+||++++-.
T Consensus 153 aFv----Dad------K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DAD------KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccc------hHHHHHHHHHHHhhcccccEEEEec
Confidence 993 332 1235589999999999999988754
No 423
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.92 E-value=0.0046 Score=66.44 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC--CCCCCccEEEec
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ--FMDETFDVILDK 141 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~--~~~~sFDlVi~~ 141 (771)
.++..|||+.+|.|.=+.++++. +.+.|++.|+++.-+..+.++..+.+ .++.....|..... .....||.|+..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 68899999999999999999887 34789999999999998877766555 46777777877651 233469999942
Q ss_pred ------cccccccCc------ccc---hHHHHHHHHHHHHcc----ccCeEEEEEEcC
Q 004164 142 ------GGLDALMEP------ELG---HKLGNQYLSEVKRLL----KSGGKFVCLTLA 180 (771)
Q Consensus 142 ------~~l~~l~~~------~~~---~~~~~~~l~~i~rvL----kpGG~~ii~~~~ 180 (771)
|++..-++. ++. .....++|....+.+ ||||+++.++.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 222221110 000 023778999999999 999999999976
No 424
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.85 E-value=0.0021 Score=65.27 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.....|+++-+|-|..+..+..+.+...|.++|++|..++..++...+. -.+++.++.+|+.+++.+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~------------ 167 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE------------ 167 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T------------
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc------------
Confidence 3457899999999988777887666678999999999999998887332 246899999999999772
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEE
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gil 685 (771)
..+|-||+++-.. ..+||..+..+++++|++
T Consensus 168 ----------------------~~~drvim~lp~~--------------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 168 ----------------------GKFDRVIMNLPES--------------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ----------------------T-EEEEEE--TSS--------------GGGGHHHHHHHEEEEEEE
T ss_pred ----------------------cccCEEEECChHH--------------HHHHHHHHHHHhcCCcEE
Confidence 5699999954211 257999999999999986
No 425
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.83 E-value=0.0077 Score=57.72 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCcchhHHHHHh-----cCCCeEEEEcCCHHHHHHHHHHhhcCC----CCcEEEEeecCCCCCCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYD-----AGFHGITNVDFSKVVISDMLRRNVRDR----SDMRWRVMDMTSMQFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~-----~g~~~V~~vDiS~~~i~~~~~~~~~~~----~~i~~~~~D~~~l~~~~~sFDl 137 (771)
.+...|+|+|||.|.++..|+. ....+|+++|.++..++.+.++..... .++.+..+++.+... ....++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 102 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI 102 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence 4678999999999999999998 433499999999999998877765443 356666666654322 456788
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEE
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCL 177 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~ 177 (771)
++. ||.-.+.. ..+++...+ ++-.+++.
T Consensus 103 ~vg---LHaCG~Ls------~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVG---LHACGDLS------DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEE---eecccchH------HHHHHHHHH---cCCCEEEE
Confidence 884 55443322 355555554 55444443
No 426
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.82 E-value=0.0045 Score=67.18 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGG 143 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~ 143 (771)
.++.++|||||++|.++..|.+.|. .|++||..+ |.... ...+++.....|......+.+.+|++++-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-----l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-----MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-----cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 5789999999999999999999998 999999665 33333 3457888888888766433678999997443
No 427
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.74 E-value=0.045 Score=54.94 Aligned_cols=95 Identities=20% Similarity=0.203 Sum_probs=71.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHH---HHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM---LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v---~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
++++||.|+|.=...|.-.+|+.+++.||-...= ++.+...+|+ ++++++.+.+-+ ...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~------------- 112 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEY------------- 112 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTT-------------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--ccc-------------
Confidence 7999999999666667788899999999999864 4455666788 469999998877 111
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
..+||+|+.=+.++ -..+++.+...|+++|.+++--
T Consensus 113 -------------------~~~fd~v~aRAv~~--------------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 113 -------------------RESFDVVTARAVAP--------------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -------------------TT-EEEEEEESSSS--------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred -------------------CCCccEEEeehhcC--------------HHHHHHHHHHhcCCCCEEEEEc
Confidence 36899999966554 1678899999999999988654
No 428
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0086 Score=60.26 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=78.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEecccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGGL 144 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~l 144 (771)
.++.+||++|-|-|.....+.+.....-+-|+.++.+++.|+.-.-....++....+-.++. .++++.||-|+-...-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 47899999999999999888887665788899999999988765433445677666655443 4678899999843221
Q ss_pred ccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 145 DALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 145 ~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
.+. + ......+.+.|+|||+|+|-...
T Consensus 180 e~y---E----dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY---E----DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH---H----HHHHHHHHHhhhcCCCceEEEec
Confidence 111 1 26678889999999999986654
No 429
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.72 E-value=0.0036 Score=61.53 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.5
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
..+..+|.|+|.|+++..+.- -+|.+||.||...+.|++...++.+.++.|+++||+.|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc
Confidence 458899999999999888873 49999999999999999998888889999999999998
No 430
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.65 E-value=0.0032 Score=63.90 Aligned_cols=45 Identities=27% Similarity=0.363 Sum_probs=34.9
Q ss_pred CCCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004164 540 GKSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 540 ~~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~ 584 (771)
+.+.+|...|+++| +|++.|.+..+ ..+|.+.|||+.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 46789999999999 89999998432 35999999999999999764
No 431
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.61 E-value=0.01 Score=62.50 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=69.4
Q ss_pred CCeEEEEcCCcc--hhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCCC--cEEEEeecCCCC-----------CC
Q 004164 69 PPQILVPGCGNS--RLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRSD--MRWRVMDMTSMQ-----------FM 131 (771)
Q Consensus 69 ~~~ILDiGCG~G--~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~~--i~~~~~D~~~l~-----------~~ 131 (771)
-...||||||-= ..+.+.++. .-.+|+-+|+.+.++..++..+.. .++ ..++.+|+.+.. +.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-NPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-CCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999943 345556554 456999999999999988766643 355 889999998742 11
Q ss_pred CCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcc
Q 004164 132 DETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAES 182 (771)
Q Consensus 132 ~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~ 182 (771)
-...=.|+..++||++.+.++ ...++..++..|.||.+++++..+.+
T Consensus 148 ~~rPVavll~~vLh~v~D~~d----p~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDD----PAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCT----HHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccC----HHHHHHHHHHhCCCCceEEEEecCCC
Confidence 122336778899999987443 57999999999999999999988754
No 432
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.58 E-value=0.0031 Score=61.76 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=48.9
Q ss_pred eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCCC--CCCCC-ccEEEec
Q 004164 71 QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSMQ--FMDET-FDVILDK 141 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l~--~~~~s-FDlVi~~ 141 (771)
.|+|+.||.|..+..+++... +|++||+++..++.+ +.+.+.+ .++.|+++|..++. +.... ||+|+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a-~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECA-KHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHH-HHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHH-HHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999854 899999999999866 4444433 47999999998762 22222 8999954
No 433
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.58 E-value=0.0047 Score=60.55 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=47.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC-CCCCeeEEEcchHHHHHhhc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT-QDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~-~~~r~~v~i~Dg~~~l~~~~ 608 (771)
.|+++.+|.|+-+..+...+ .+|.+||+||.-++.|+.....- ..++++++.+|..+.+++..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc
Confidence 47888899898887777776 47999999999999999886221 26789999999999877754
No 434
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.56 E-value=0.03 Score=53.38 Aligned_cols=124 Identities=11% Similarity=0.134 Sum_probs=75.6
Q ss_pred eEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCC--CCCCCccEEEeccccccccCcccc----hHHHHHHHHHH
Q 004164 93 GITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQ--FMDETFDVILDKGGLDALMEPELG----HKLGNQYLSEV 164 (771)
Q Consensus 93 ~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~--~~~~sFDlVi~~~~l~~l~~~~~~----~~~~~~~l~~i 164 (771)
+|+++||-+.+|+..++++.+.+ .+++++..+=.++. .+.+++|+++.+ |.+++..+.. ++.--.+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999998887664 46999988877774 233489998864 5666654422 12255788999
Q ss_pred HHccccCeEEEEEEcCc-ch-h-----hcchhhhh-ccCcEEEEeecCCCCCCCCCCccEEEEEEE
Q 004164 165 KRLLKSGGKFVCLTLAE-SH-V-----LGLLFPKF-RFGWKMSVHAIPQKSSSEPSLQTFMVVADK 222 (771)
Q Consensus 165 ~rvLkpGG~~ii~~~~~-~~-~-----~~~l~~~~-~~~w~~~~~~i~~~~~~~~~l~~f~~v~~k 222 (771)
.++|+|||+++++.|.. +. . ...+.... ...|.+....+.. ...-++|.++++|
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N----~~~~pp~l~~ieK 140 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN----QKNNPPLLVIIEK 140 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-----SS---EEEEEEE
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC----CCCCCCEEEEEEC
Confidence 99999999999998862 21 1 11222222 3467776655543 3445677777765
No 435
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.54 E-value=0.0092 Score=63.66 Aligned_cols=103 Identities=14% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHH---HHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLN---LAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMS 617 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~---vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~ 617 (771)
+.++||+||+|.|.-.--+....+. .|.++|-++--.- .++++.|. +. .......|++.+.. .
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~-~--------- 180 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN-L--------- 180 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-c---------
Confidence 4579999999999887666666543 7888887766543 44555553 22 23334578877655 2
Q ss_pred cccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 618 VVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
..||+||. -..-.-+..| .+.|..+++.|++||.+|+-..
T Consensus 181 -----------------------~~FDtVF~----MGVLYHrr~P------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 181 -----------------------GAFDTVFS----MGVLYHRRSP------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----------------------CCcCEEEE----eeehhccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence 57999987 1111112223 6789999999999999997654
No 436
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.51 E-value=0.0036 Score=66.53 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=62.0
Q ss_pred CCccchhH-HHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC
Q 004164 511 HGYLASSY-HMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ 589 (771)
Q Consensus 511 ~~~L~~~Y-~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~ 589 (771)
.+||..+- ...|+..+-+ .....|++||-|.|.++..|.+.. .++++||+|+...+.-++.|. .
T Consensus 10 QnFL~~~~~~~~Iv~~~~~-----------~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~--~ 74 (262)
T PF00398_consen 10 QNFLVDPNIADKIVDALDL-----------SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA--S 74 (262)
T ss_dssp SSEEEHHHHHHHHHHHHTC-----------GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT--T
T ss_pred cCeeCCHHHHHHHHHhcCC-----------CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh--h
Confidence 45676543 3445544322 245789999999999999999987 689999999999999999887 5
Q ss_pred CCCeeEEEcchHHH
Q 004164 590 DKSLKVHITDGIKF 603 (771)
Q Consensus 590 ~~r~~v~i~Dg~~~ 603 (771)
+++++++.+|+.++
T Consensus 75 ~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 75 NPNVEVINGDFLKW 88 (262)
T ss_dssp CSSEEEEES-TTTS
T ss_pred cccceeeecchhcc
Confidence 78999999999986
No 437
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.052 Score=56.70 Aligned_cols=128 Identities=15% Similarity=0.182 Sum_probs=87.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
.....|+.-|.|.|++..++.... |.-++...|.+..-.+-|++.| |. ++.+++.+.|--.-
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi--~~~vt~~hrDVc~~------------ 169 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI--GDNVTVTHRDVCGS------------ 169 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC--CcceEEEEeecccC------------
Confidence 345689999999999998877765 6669999999999999999999 43 55677776653210
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
........+|+|++|+-+++ +.+-.+.++|+.+|.-++|+ ++.-+
T Consensus 170 -------------------GF~~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csF-SPCIE 214 (314)
T KOG2915|consen 170 -------------------GFLIKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSF-SPCIE 214 (314)
T ss_pred -------------------CccccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEec-cHHHH
Confidence 00111367999999996663 22333445788888777776 34444
Q ss_pred HHHHHHHHHHH-hccceEEeee
Q 004164 696 TKDMVISRMKM-VFNHLFCLQL 716 (771)
Q Consensus 696 ~~~~v~~~l~~-vF~~v~~~~~ 716 (771)
..+.-.+.|.+ =|-++-.+++
T Consensus 215 Qvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 215 QVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHHHhCCCceEEEEEe
Confidence 44455566655 4666655554
No 438
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.43 E-value=0.0037 Score=67.07 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCCcEEEEecccc----HHHHHHHHhCC----CCcEEEEEcCHHHHHHHHhh
Q 004164 541 KSVKAVVIGLGAG----LLPMFLHECMP----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 541 ~~~~vLviGlG~G----~l~~~L~~~~p----~~~i~~VEiD~~v~~vA~~~ 584 (771)
.+.||...|+++| +++|.|.+.++ ..+|.+.|||+.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 4589999999999 89999998754 35899999999999999775
No 439
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.36 E-value=0.0018 Score=58.54 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=43.3
Q ss_pred EEEcCCcchhHHHHHhc----CCCeEEEEcCCHH---HHHHHHHHhhcCCCCcEEEEeecCCC--CCCCCCccEEEeccc
Q 004164 73 LVPGCGNSRLSEHLYDA----GFHGITNVDFSKV---VISDMLRRNVRDRSDMRWRVMDMTSM--QFMDETFDVILDKGG 143 (771)
Q Consensus 73 LDiGCG~G~ls~~La~~----g~~~V~~vDiS~~---~i~~~~~~~~~~~~~i~~~~~D~~~l--~~~~~sFDlVi~~~~ 143 (771)
||+|+..|..+..+++. +..+++++|..+. .-+.+++ .....+++++.++..+. .++.++||+|+.-+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68999999988888764 2237999999994 3322222 12235799999998754 244579999996542
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
-.+ ......+..+.+.|+|||.+++-+
T Consensus 79 H~~--------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY--------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H--------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCH--------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 211 226688999999999999988754
No 440
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.34 E-value=0.0065 Score=59.78 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=74.4
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhc-CCCCcEEEEeecCCCCCCCCCccEEEeccccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVR-DRSDMRWRVMDMTSMQFMDETFDVILDKGGLDAL 147 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~-~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l 147 (771)
.+.+.|+|+|+|.++...+.. ..+|++++.+|...+.+.+...- ...+++.+.+|+.+..| +..|+|+|...=.++
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 478999999999999877776 45899999999777655443222 23578999999999988 467999987544455
Q ss_pred cCcccchHHHHHHHHHHHHccccCeEEE
Q 004164 148 MEPELGHKLGNQYLSEVKRLLKSGGKFV 175 (771)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~rvLkpGG~~i 175 (771)
...+ .-.++..+...||-++.++
T Consensus 110 i~E~-----qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEK-----QVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hccc-----ccHHHHHHHHHhhcCCccc
Confidence 4443 3467777777899888765
No 441
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.34 E-value=0.051 Score=57.61 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=93.6
Q ss_pred ecCCccchhHHHHHHHHhh----hhhhhhhhhhccCCCCcEEEEecccc-HHHHHHHHhCC-CCcEEEEEcCHHHHHHHH
Q 004164 509 VYHGYLASSYHMGIISGFT----LISSYLESVASVGKSVKAVVIGLGAG-LLPMFLHECMP-FVGIEAVELDLTMLNLAE 582 (771)
Q Consensus 509 vd~~~L~~~Y~~~m~~~l~----l~~~~~~~~~~~~~~~~vLviGlG~G-~l~~~L~~~~p-~~~i~~VEiD~~v~~vA~ 582 (771)
+|..||...=-+++=.--. ++...+......+.+.+||.|-+|.| .+.-.|..+-. ..+|..+|.+|.-++.++
T Consensus 99 iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~ 178 (311)
T PF12147_consen 99 IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR 178 (311)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH
Confidence 7888888765555521111 11111222224578999999999999 44445555532 269999999999999887
Q ss_pred hhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCC
Q 004164 583 DYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGM 659 (771)
Q Consensus 583 ~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~ 659 (771)
+.- |+ .+-++++.+||.+.- +++. -..+++++|+ +|+
T Consensus 179 ~li~~~gL--~~i~~f~~~dAfd~~-~l~~-----------------------------l~p~P~l~iV--------sGL 218 (311)
T PF12147_consen 179 ALIAERGL--EDIARFEQGDAFDRD-SLAA-----------------------------LDPAPTLAIV--------SGL 218 (311)
T ss_pred HHHHHcCC--ccceEEEecCCCCHh-Hhhc-----------------------------cCCCCCEEEE--------ecc
Confidence 765 65 455699999998752 1110 1256888887 122
Q ss_pred CcCCcCccc----HHHHHHHHHccCCCcEEEEEeccCChh
Q 004164 660 TCPAADFVE----GSFLLTVKDALSEQGLFIVNLVSRSQA 695 (771)
Q Consensus 660 s~pp~~f~~----~~fl~~~~~~L~~~Gilv~Nl~~~~~~ 695 (771)
-+-|-+ ..-|.-+..+|.|||.+|.---+.+++
T Consensus 219 ---~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 219 ---YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred ---hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 222333 335677889999999999876555655
No 442
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.018 Score=61.20 Aligned_cols=121 Identities=21% Similarity=0.262 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHh---hcC-----------
Q 004164 50 WPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRN---VRD----------- 114 (771)
Q Consensus 50 ~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~---~~~----------- 114 (771)
|..+.+.|..+... .......+||..|||.|+++..|+..|+ ++-|-++|--|+-.-.=.+ ...
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 33444444444432 1123467999999999999999999998 6777788876653111000 000
Q ss_pred ---------------CC------------CcEEEEeecCCC---CCCCCCccEEEeccccccccCcccchHHHHHHHHHH
Q 004164 115 ---------------RS------------DMRWRVMDMTSM---QFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEV 164 (771)
Q Consensus 115 ---------------~~------------~i~~~~~D~~~l---~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i 164 (771)
.| .++...+|+.+. +-..++||+|+....++... .+-.+++.|
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~-------NileYi~tI 282 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH-------NILEYIDTI 282 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH-------HHHHHHHHH
Confidence 01 111223444432 11234799999775555422 277899999
Q ss_pred HHccccCeEEEEEE
Q 004164 165 KRLLKSGGKFVCLT 178 (771)
Q Consensus 165 ~rvLkpGG~~ii~~ 178 (771)
..+|||||+.+=..
T Consensus 283 ~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 283 YKILKPGGVWINLG 296 (369)
T ss_pred HHhccCCcEEEecc
Confidence 99999999988654
No 443
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.27 E-value=0.016 Score=62.45 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHH--hh----c--CCCCcEEEEeecCCC-CCCCCCccE
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRR--NV----R--DRSDMRWRVMDMTSM-QFMDETFDV 137 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~--~~----~--~~~~i~~~~~D~~~l-~~~~~sFDl 137 (771)
...++|-+|.|.|...++|.+.+ ..+|+-+|.+|.||+.++.. .. . ..++++.+..|+.+. .-..+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 45799999999999999999985 78999999999999976521 11 1 226888888888765 223458999
Q ss_pred EEeccccccccCcccchHH----HHHHHHHHHHccccCeEEEEEEc
Q 004164 138 ILDKGGLDALMEPELGHKL----GNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~----~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
||.. ++++.+ +.. -..+.....+.|+++|.+++..-
T Consensus 369 vIVD-----l~DP~t-ps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 369 VIVD-----LPDPST-PSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEEe-----CCCCCC-cchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 9842 233332 111 34667778899999999988653
No 444
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.24 E-value=0.03 Score=60.51 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
++-+...+.+++.. .++...+|.--|.|..+..+.+. +.+.++|+|-++.+++.+.++......++.++..++.++
T Consensus 5 ~PVll~Evl~~L~~---~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 5 IPVLLKEVLEALNP---KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp --TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred ecccHHHHHHhhCc---CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 34445556666654 67889999999999999999886 447999999999999988777755557788888888775
Q ss_pred C-----C-CCCCccEEE
Q 004164 129 Q-----F-MDETFDVIL 139 (771)
Q Consensus 129 ~-----~-~~~sFDlVi 139 (771)
. . ....+|-|+
T Consensus 82 ~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 82 DEYLKELNGINKVDGIL 98 (310)
T ss_dssp HHHHHHTTTTS-EEEEE
T ss_pred HHHHHHccCCCccCEEE
Confidence 3 2 334666666
No 445
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.21 E-value=0.018 Score=63.14 Aligned_cols=147 Identities=14% Similarity=0.222 Sum_probs=91.3
Q ss_pred CCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-----CCC-----CCCCeeEEEcchHHHHHhhcc
Q 004164 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-----GFT-----QDKSLKVHITDGIKFVREMKS 609 (771)
Q Consensus 541 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-----g~~-----~~~r~~v~i~Dg~~~l~~~~~ 609 (771)
...+||+||+| ||-|..|..... ..+.+|||+++.++-|++.. +.. .+-...++.+|... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence 56789999999 888999988754 58999999999999998877 100 01234566676652 11110
Q ss_pred CCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEE
Q 004164 610 SSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLF 685 (771)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gil 685 (771)
.+ .....+||+|=+=. |-+-.|-+ ..+|+++.++|+|||+|
T Consensus 138 --------~~-----------------~~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~F 182 (331)
T PF03291_consen 138 --------KL-----------------PPRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYF 182 (331)
T ss_dssp --------TS-----------------SSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEE
T ss_pred --------hc-----------------cccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEE
Confidence 00 01135899996511 11333333 45999999999999999
Q ss_pred EEEeccCChhHHHHHHHHHHH--------hcc-ceEEeeecCC------ccEEEEEecCCC
Q 004164 686 IVNLVSRSQATKDMVISRMKM--------VFN-HLFCLQLEED------VNLVLFGLSSES 731 (771)
Q Consensus 686 v~Nl~~~~~~~~~~v~~~l~~--------vF~-~v~~~~~~~~------~N~Vl~a~~~~~ 731 (771)
+.-++ +.. .++.+|++ .|+ .+|.+..+.+ ++...|-+.+..
T Consensus 183 IgT~~--d~~---~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 183 IGTTP--DSD---EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp EEEEE---HH---HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred EEEec--CHH---HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence 98764 333 34555655 222 5777777666 777888776653
No 446
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.09 E-value=0.038 Score=57.78 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=67.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||.|.|..+.-++.+|. +|.+-|+++.|...-++. |+ +|+ |..+|- +.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k-g~------~vl--~~~~w~-~~------------- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK-GF------TVL--DIDDWQ-QT------------- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC-CC------eEE--ehhhhh-cc-------------
Confidence 567899999999999999998884 599999999997654432 33 454 333341 11
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEE-eC-CCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEec
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILII-DV-DSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~-D~-~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~ 690 (771)
+.+||+|.+ .+ |-.+. | ...|+.+++.|+|+|.+++-++
T Consensus 149 -------------------~~~fDvIscLNvLDRc~~------P------~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 149 -------------------DFKFDVISCLNVLDRCDR------P------LTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -------------------CCceEEEeehhhhhccCC------H------HHHHHHHHHHhCCCCEEEEEEE
Confidence 357999975 11 22211 2 6789999999999999997654
No 447
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.02 E-value=0.011 Score=59.62 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC---CCcEEEEeecCCC----CCCCCCccEEEe
Q 004164 68 PPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR---SDMRWRVMDMTSM----QFMDETFDVILD 140 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~---~~i~~~~~D~~~l----~~~~~sFDlVi~ 140 (771)
....|+|.-||-|..+...+..+. .|++||+++.-|.-+ +.+.+-+ .+++|+++|+.++ .+....+|+|+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~A-khNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACA-RHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHH-hccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 356899999999999999998877 899999999999744 5554433 5899999999875 355555777775
Q ss_pred cccc
Q 004164 141 KGGL 144 (771)
Q Consensus 141 ~~~l 144 (771)
....
T Consensus 172 sppw 175 (263)
T KOG2730|consen 172 SPPW 175 (263)
T ss_pred CCCC
Confidence 4433
No 448
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.98 E-value=0.033 Score=61.41 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=82.3
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCCCC---CCCCCccEEE
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTSMQ---FMDETFDVIL 139 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~l~---~~~~sFDlVi 139 (771)
+.|+.+|||+.+.+|.=+.+++.. +-+.|++.|.+..-+......+.+.+ .+......|...+| |+. +||-|+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL 317 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL 317 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence 678999999999999888888765 44579999999988887666554444 45666777887664 554 899999
Q ss_pred ecccccc--ccCccc-------------chHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 140 DKGGLDA--LMEPEL-------------GHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 140 ~~~~l~~--l~~~~~-------------~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
.-..... +...+. -..+.+++|.....++++||+++.+|.+
T Consensus 318 LDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 318 LDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 4332222 111110 0124788999999999999999998876
No 449
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.97 E-value=0.019 Score=54.60 Aligned_cols=57 Identities=5% Similarity=-0.073 Sum_probs=46.0
Q ss_pred eEEEEcCCcchhHHHHHhcCC-CeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEeecCC
Q 004164 71 QILVPGCGNSRLSEHLYDAGF-HGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMDMTS 127 (771)
Q Consensus 71 ~ILDiGCG~G~ls~~La~~g~-~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D~~~ 127 (771)
.+||+|||.|..+..++..+. .+|+++|.++.+.+.+++.....+ +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999988865 389999999999998876654432 568888877765
No 450
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.21 Score=50.19 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=83.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHH----HHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTM----LNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v----~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....+||-||.-+|+.++.+....+.-.|-+||..|.+ +++|++. +++--+.+||..= ++...
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R------~Ni~PIL~DA~~P-~~Y~~------ 141 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR------PNIIPILEDARKP-EKYRH------ 141 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC------CCceeeecccCCc-HHhhh------
Confidence 55679999999999999999999887789999999975 4566553 4566677888632 11110
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCC--
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRS-- 693 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~-- 693 (771)
--...|+|+.|+-.++. ..-+..++...|+++|-+++-+-.|+
T Consensus 142 -----------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSId 186 (231)
T COG1889 142 -----------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSID 186 (231)
T ss_pred -----------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeeccc
Confidence 01459999999966653 26678899999999995554443332
Q ss_pred -----hhHHHHHHHHHHHhc
Q 004164 694 -----QATKDMVISRMKMVF 708 (771)
Q Consensus 694 -----~~~~~~v~~~l~~vF 708 (771)
.+.+..-+.+|.+-+
T Consensus 187 vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 187 VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccCCHHHHHHHHHHHHHhcC
Confidence 233444455555544
No 451
>PRK04148 hypothetical protein; Provisional
Probab=95.89 E-value=0.025 Score=53.55 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=43.9
Q ss_pred CCCCcEEEEeccccH-HHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHH
Q 004164 540 GKSVKAVVIGLGAGL-LPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIK 602 (771)
Q Consensus 540 ~~~~~vLviGlG~G~-l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~ 602 (771)
.+..++|+||+|.|. ++..|.+.. .+|++||++|..++.|++. .++++++|-.+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~ 69 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-------GLNAFVDDLFN 69 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-------CCeEEECcCCC
Confidence 345789999999995 888888653 5999999999999988765 25788888764
No 452
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.85 E-value=0.039 Score=58.60 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=39.8
Q ss_pred CCCcEEEEecccc----HHHHHHHHhCC-----CCcEEEEEcCHHHHHHHHhh
Q 004164 541 KSVKAVVIGLGAG----LLPMFLHECMP-----FVGIEAVELDLTMLNLAEDY 584 (771)
Q Consensus 541 ~~~~vLviGlG~G----~l~~~L~~~~p-----~~~i~~VEiD~~v~~vA~~~ 584 (771)
.+.+|...|+++| ++++.|.+.+| ..+|++.|||..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 5789999999999 99999999996 36999999999999999764
No 453
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.81 E-value=0.06 Score=55.47 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCCCCc-EEEEeecCCCC---CCCCCccEEEecc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDRSDM-RWRVMDMTSMQ---FMDETFDVILDKG 142 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~~~i-~~~~~D~~~l~---~~~~sFDlVi~~~ 142 (771)
.++..+||+|.-||.++..+.++|..+|+|+|..-..+. -+++ ..+++ .+...|+..+. +. +..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kLR-~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKLR-NDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhHh-cCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 478899999999999999999999999999999876554 2332 23443 34455665552 33 3678888765
Q ss_pred ccccccCcccchHHHHHHHHHHHHccccCeEEEEEE
Q 004164 143 GLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLT 178 (771)
Q Consensus 143 ~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~ 178 (771)
++-. ...+|..+..+++++|.++..-
T Consensus 153 SFIS----------L~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 153 SFIS----------LKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ehhh----------HHHHHHHHHHhcCCCceEEEEe
Confidence 5544 4588999999999998877653
No 454
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.80 E-value=0.03 Score=60.72 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~ 603 (771)
+.+.||.+|+|+|.|.+|.++.. ..+|.+||-+... +.|++-+.- ..++.++++.|..-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 35789999999999999999997 4599999987766 888887722 1245688887755443
No 455
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.79 E-value=0.041 Score=59.40 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=57.1
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
.+-+.+.+.+.+.. .++..++|.-||.|..+..+++. +.+.|+|+|.++.+++.++++......++.+++++..++
T Consensus 5 ~pVll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l 81 (305)
T TIGR00006 5 QSVLLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANF 81 (305)
T ss_pred cchhHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence 44455555666543 57889999999999999999886 347999999999999988777644334666766666554
No 456
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.11 Score=55.38 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=52.0
Q ss_pred CCCCCeEEEEcCCcchhHHHHHhcC--CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCC
Q 004164 66 SSPPPQILVPGCGNSRLSEHLYDAG--FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSM 128 (771)
Q Consensus 66 ~~~~~~ILDiGCG~G~ls~~La~~g--~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l 128 (771)
+.++...+|.--|.|..+..+.+.. .++++++|-++.+|+.++++...-.++++++..++.++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3788999999999999999998874 36799999999999999888765556777777766554
No 457
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.23 Score=50.45 Aligned_cols=143 Identities=14% Similarity=0.125 Sum_probs=93.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchH-----HHHHhhccCCccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGI-----KFVREMKSSSATD 614 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~-----~~l~~~~~~~~~~ 614 (771)
....|++||.--|+-...+.++... ..|.+|||+|.-. .+.+..+.+|.. +=|.+.-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l------ 107 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEAL------ 107 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHc------
Confidence 4578999999999999999988754 4699999998532 223666666654 2222221
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-C--cCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 615 EMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-A--ADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p--~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
....+|+|+.|....- .|...- . ..-+....++.+...|+++|.|++-+.-
T Consensus 108 ------------------------~~~~~DvV~sD~ap~~--~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 108 ------------------------GGAPVDVVLSDMAPNT--SGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ------------------------CCCCcceEEecCCCCc--CCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 1345899999986632 222110 1 1123445667788899999999987753
Q ss_pred CChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEec
Q 004164 692 RSQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLS 728 (771)
Q Consensus 692 ~~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~ 728 (771)
.. ..+.++..+++.|..|...+.. +.....++|..
T Consensus 162 g~--~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 162 GE--DFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred CC--CHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 32 2346899999999998887653 23444555543
No 458
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.67 E-value=0.21 Score=51.29 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=80.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhccCC-CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHH---HHHHHHhhcCCCCCCCe
Q 004164 518 YHMGIISGFTLISSYLESVASVGK-SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLT---MLNLAEDYFGFTQDKSL 593 (771)
Q Consensus 518 Y~~~m~~~l~l~~~~~~~~~~~~~-~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~---v~~vA~~~Fg~~~~~r~ 593 (771)
|.+-++-++.+.... .. +.++++||.|+|.=...|.-.+|+.+|+.||-... -++.+.+.+|+ +++
T Consensus 50 ~~rHilDSl~~~~~~-------~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L---~nv 119 (215)
T COG0357 50 WQRHILDSLVLLPYL-------DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL---ENV 119 (215)
T ss_pred HHHHHHHHhhhhhcc-------cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC---CCe
Confidence 555555555544321 22 58999999999944444667789999999998764 55677777887 569
Q ss_pred eEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCc-eeEEEEeCCCCCCCCCCCcCCcCcccHHHH
Q 004164 594 KVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNAR-VDILIIDVDSPDSSSGMTCPAADFVEGSFL 672 (771)
Q Consensus 594 ~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl 672 (771)
+++.+-+-+|-.+ .+ ||+|..=+.++ | ..+.
T Consensus 120 ~i~~~RaE~~~~~----------------------------------~~~~D~vtsRAva~-----L---------~~l~ 151 (215)
T COG0357 120 EIVHGRAEEFGQE----------------------------------KKQYDVVTSRAVAS-----L---------NVLL 151 (215)
T ss_pred EEehhhHhhcccc----------------------------------cccCcEEEeehccc-----h---------HHHH
Confidence 9999988777222 23 99998855444 1 5667
Q ss_pred HHHHHccCCCcEEEEEec
Q 004164 673 LTVKDALSEQGLFIVNLV 690 (771)
Q Consensus 673 ~~~~~~L~~~Gilv~Nl~ 690 (771)
+-+...|++||.+++-..
T Consensus 152 e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 152 ELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred HHHHHhcccCCcchhhhH
Confidence 888888999888764433
No 459
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=0.029 Score=63.34 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhccCCCCcEEEEeccccHHHH----HHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCC
Q 004164 516 SSYHMGIISGFTLISSYLESVASVGKSVKAVVIGLGAGLLPM----FLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQD 590 (771)
Q Consensus 516 ~~Y~~~m~~~l~l~~~~~~~~~~~~~~~~vLviGlG~G~l~~----~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~ 590 (771)
..|-+|+..+|.=.. +.+++.....|+++|.|-|=|.. ........+++.+||-+|..+-.-.. -++ ..+
T Consensus 346 ~~Yq~Ai~~AL~Drv----pd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~ 420 (649)
T KOG0822|consen 346 DQYQQAILKALLDRV----PDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWD 420 (649)
T ss_pred HHHHHHHHHHHHhhC----cccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhc
Confidence 358888886654111 11222335668999999995544 23334456799999999987765444 233 368
Q ss_pred CCeeEEEcchHHHHHhhccCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHH
Q 004164 591 KSLKVHITDGIKFVREMKSSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGS 670 (771)
Q Consensus 591 ~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~ 670 (771)
.+|+++-+|-+.|-.. ..+.|+|+..+-.+-..+ =+++|
T Consensus 421 ~~Vtii~~DMR~w~ap---------------------------------~eq~DI~VSELLGSFGDN--------ELSPE 459 (649)
T KOG0822|consen 421 NRVTIISSDMRKWNAP---------------------------------REQADIIVSELLGSFGDN--------ELSPE 459 (649)
T ss_pred CeeEEEeccccccCCc---------------------------------hhhccchHHHhhccccCc--------cCCHH
Confidence 8999999999998411 256899987765443322 25699
Q ss_pred HHHHHHHccCCCcEEE
Q 004164 671 FLLTVKDALSEQGLFI 686 (771)
Q Consensus 671 fl~~~~~~L~~~Gilv 686 (771)
.|.-+...|+|+||.|
T Consensus 460 CLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 460 CLDGAQKFLKPDGISI 475 (649)
T ss_pred HHHHHHhhcCCCceEc
Confidence 9999999999999988
No 460
>PRK10742 putative methyltransferase; Provisional
Probab=95.57 E-value=0.038 Score=57.65 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-------CC--CCCeeEEEcchHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-------TQ--DKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-------~~--~~r~~v~i~Dg~~~l~~~~ 608 (771)
+..++||++=.|.|..+..+.... .+|+.||-+|.+..+.++-+.- .. ..|++++.+|+++|++...
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 344589999999999988887773 5699999999999988877632 11 1579999999999998754
No 461
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.45 E-value=0.038 Score=64.77 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC--------CCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMP--------FVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKF 603 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p--------~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~ 603 (771)
...+||+.|+|+|.+...+....+ ...+.++|||+..+..|+..+........++..+|.+..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 456899999999987766655543 258999999999999998875332223467777777654
No 462
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.39 E-value=0.022 Score=58.58 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=71.9
Q ss_pred CcEEEEeccccHHHHHHHHhCCC--CcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPF--VGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~--~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+||.||+|.|.+.--|.+..|+ ..|.++|-+|..+++.+++-++.+ .++...+-| +....
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~D-------lt~~~--------- 135 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWD-------LTSPS--------- 135 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccccee-------ccchh---------
Confidence 38999999999776666666666 899999999999999999987744 333332222 22000
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEe-CCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEecc
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIID-VDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVS 691 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D-~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~ 691 (771)
-+. ..+...+|+|.+= +-|. + ||... ...+.++.++|+|||.+++-=.+
T Consensus 136 --------~~~-----~~~~~svD~it~IFvLSA-----i--~pek~--~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 136 --------LKE-----PPEEGSVDIITLIFVLSA-----I--HPEKM--QSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred --------ccC-----CCCcCccceEEEEEEEec-----c--ChHHH--HHHHHHHHHHhCCCcEEEEeecc
Confidence 000 1123567877531 1222 1 23333 77899999999999999964333
No 463
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.30 E-value=0.056 Score=54.12 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcC--------CCCcEEEEeecCCC-C--CCCCCc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRD--------RSDMRWRVMDMTSM-Q--FMDETF 135 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~--------~~~i~~~~~D~~~l-~--~~~~sF 135 (771)
..-.+.|||||.|.+...|+.. +-.-|.|.+|--.+-+..+++.... .+++.....+.... | |..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 3468999999999999999877 3356889988777766665554321 24566666555443 1 111111
Q ss_pred cEEEeccccccccCcccc------hHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 136 DVILDKGGLDALMEPELG------HKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 136 DlVi~~~~l~~l~~~~~~------~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+ -.+..++++.-- .-.-..++.+..-+|++||.++.++-.
T Consensus 140 s-----kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 140 S-----KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred c-----cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 1 111122222100 001347889999999999999988754
No 464
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.26 E-value=0.004 Score=59.44 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=50.3
Q ss_pred CCcEEEEeecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 116 SDMRWRVMDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 116 ~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+.+.+++-.....+|.+++.|+|++..++.|+.-.+ ...++++++|+|||||++-|....
T Consensus 29 ~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~E-----g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 29 PEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDE-----GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 355666655666789999999999999999998655 578999999999999999998755
No 465
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.095 Score=56.49 Aligned_cols=130 Identities=16% Similarity=0.104 Sum_probs=75.8
Q ss_pred hhHHHHHHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcCCC-----CcEEEE
Q 004164 50 WPQLRDPLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRDRS-----DMRWRV 122 (771)
Q Consensus 50 ~~~l~~~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~~~-----~i~~~~ 122 (771)
|..+...|..+-...+.-...+|||+|.|+|.-...+.+. ...+++.++.|+..-+..-.......+ +..-+.
T Consensus 95 Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt 174 (484)
T COG5459 95 YASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT 174 (484)
T ss_pred HHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc
Confidence 4455555555443323344578999999999888777665 235677888887443322211111111 122233
Q ss_pred eecCCCCCCCCCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchh
Q 004164 123 MDMTSMQFMDETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHV 184 (771)
Q Consensus 123 ~D~~~l~~~~~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~ 184 (771)
.|-..++. ...|++|+ +++-+.....+. -+..+++.+..++.|||.+++++-+.+.-
T Consensus 175 ~dRl~lp~-ad~ytl~i---~~~eLl~d~~ek-~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 175 EDRLSLPA-ADLYTLAI---VLDELLPDGNEK-PIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhccCCCc-cceeehhh---hhhhhccccCcc-hHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 34334443 24677777 444444333221 14458999999999999999999876543
No 466
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.19 E-value=0.077 Score=56.71 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=67.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc-CCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF-GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F-g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
.+-||.+|.|.|.|.+|..... ..+|-+||.+ +|.+.|++-- +-.-.+|+.|+-|-- +++.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi----Edie------------ 239 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI----EDIE------------ 239 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc----cccc------------
Confidence 3558999999999999998885 4499999987 4677887765 222357888887733 2222
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEE
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFI 686 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv 686 (771)
-.++.|+||. ++.+-| --.+.+ .|-+-.+++-|+|+|...
T Consensus 240 ------------------LPEk~DviIS-----EPMG~m-L~NERM--LEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 240 ------------------LPEKVDVIIS-----EPMGYM-LVNERM--LESYLHARKWLKPNGKMF 279 (517)
T ss_pred ------------------CchhccEEEe-----ccchhh-hhhHHH--HHHHHHHHhhcCCCCccc
Confidence 1378999997 332211 112222 334556789999999765
No 467
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.05 E-value=0.2 Score=56.92 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=82.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...+++++=+|.|..+..|.... .+|++||++|..++.|++.-....-.++.++.+|+.++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 44689999999999999998554 6899999999999999988744333449999999999987753
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHH
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDM 699 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~ 699 (771)
++..+|+||+|- +..| .++++++.+.+ +.|..++-+ .|....+.+.
T Consensus 359 ------------------~~~~~d~VvvDP----PR~G--------~~~~~lk~l~~-~~p~~IvYV--SCNP~TlaRD 404 (432)
T COG2265 359 ------------------EGYKPDVVVVDP----PRAG--------ADREVLKQLAK-LKPKRIVYV--SCNPATLARD 404 (432)
T ss_pred ------------------ccCCCCEEEECC----CCCC--------CCHHHHHHHHh-cCCCcEEEE--eCCHHHHHHH
Confidence 135799999963 2233 34788887776 556666554 4454444444
No 468
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.03 E-value=0.063 Score=55.93 Aligned_cols=81 Identities=21% Similarity=0.132 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCCCCCccEEEeccccc
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~~~sFDlVi~~~~l~ 145 (771)
++..+|+|||||-=-++..+.... ...|+|+||+..+++....-....+.+.+....|...-+ +....|+.+.--+++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTLP 182 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-HH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHHH
Confidence 357899999999988887766552 359999999999999776665666788889999988764 457799999776666
Q ss_pred ccc
Q 004164 146 ALM 148 (771)
Q Consensus 146 ~l~ 148 (771)
.+.
T Consensus 183 ~le 185 (251)
T PF07091_consen 183 CLE 185 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 469
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.01 E-value=0.14 Score=54.92 Aligned_cols=48 Identities=33% Similarity=0.473 Sum_probs=42.9
Q ss_pred CCCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCC
Q 004164 540 GKSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFT 588 (771)
Q Consensus 540 ~~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~ 588 (771)
....+|||+|.| .|.++....+.+.-.+|.++|+++.-+++||+ ||..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~ 216 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT 216 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe
Confidence 556799999999 68888888889988899999999999999999 9873
No 470
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.01 E-value=0.23 Score=51.55 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=58.1
Q ss_pred CCCcEEEEecccc-HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCccccc
Q 004164 541 KSVKAVVIGLGAG-LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEM 616 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~ 616 (771)
..++||+||=+.- +|+..|. +.| .+|+|||||+.+++.-++.. |+ .++.+..|-++=+.+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~-~~I~VvDiDeRll~fI~~~a~~~gl----~i~~~~~DlR~~LP~~~-------- 109 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLP-KRITVVDIDERLLDFINRVAEEEGL----PIEAVHYDLRDPLPEEL-------- 109 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T---SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT--------
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCC-CeEEEEEcCHHHHHHHHHHHHHcCC----ceEEEEecccccCCHHH--------
Confidence 3578999996655 4444443 334 59999999999998766443 65 38999999887665532
Q ss_pred ccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCc-EEEEEeccCC
Q 004164 617 SVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQG-LFIVNLVSRS 693 (771)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~G-ilv~Nl~~~~ 693 (771)
.++||+++.|- +....|| .-|+....+.|+..| ...+.+...+
T Consensus 110 -----------------------~~~fD~f~TDP--PyT~~G~---------~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 110 -----------------------RGKFDVFFTDP--PYTPEGL---------KLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -----------------------SS-BSEEEE-----SSHHHH---------HHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -----------------------hcCCCEEEeCC--CCCHHHH---------HHHHHHHHHHhCCCCceEEEEEecCc
Confidence 27899999953 2222233 568888999997766 5455554443
No 471
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.96 E-value=0.28 Score=50.08 Aligned_cols=135 Identities=15% Similarity=0.129 Sum_probs=92.5
Q ss_pred HHHHhhCCCCCCCCCeEEEEcCCcchhHHHHHhcC-CCeEEEEcCCHHHHHHHHHHhhcCC--CCcEEEEeecCCCCCCC
Q 004164 56 PLISLIGAPTSSPPPQILVPGCGNSRLSEHLYDAG-FHGITNVDFSKVVISDMLRRNVRDR--SDMRWRVMDMTSMQFMD 132 (771)
Q Consensus 56 ~l~~~l~~~~~~~~~~ILDiGCG~G~ls~~La~~g-~~~V~~vDiS~~~i~~~~~~~~~~~--~~i~~~~~D~~~l~~~~ 132 (771)
.+..+++ .+.++.|+||--+.+..+|.+.+ ...++++|+++..++.+.+.....+ ++++..++|....--.+
T Consensus 9 ~va~~V~-----~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 9 TVANLVK-----QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELE 83 (226)
T ss_pred HHHHHHH-----cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCcc
Confidence 3555664 35569999999999999999885 4689999999999998877665444 56778888875432234
Q ss_pred CCccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhhccCcEEEEeecCCC
Q 004164 133 ETFDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKFRFGWKMSVHAIPQK 206 (771)
Q Consensus 133 ~sFDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~~~~w~~~~~~i~~~ 206 (771)
..+|+|+..|+-..+ +..++++-...|+.=-+|++.-...+......+ ...+|.+....+...
T Consensus 84 d~~d~ivIAGMGG~l---------I~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~I~~E~ileE 146 (226)
T COG2384 84 DEIDVIVIAGMGGTL---------IREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYEIKAETILEE 146 (226)
T ss_pred CCcCEEEEeCCcHHH---------HHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCceeeeeeeecc
Confidence 479999987755443 668888888888754456654433332221111 134898888777543
No 472
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.96 E-value=0.032 Score=63.04 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=58.1
Q ss_pred ccchhHHHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcCC-CCcEEEEee
Q 004164 47 YAEWPQLRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRDR-SDMRWRVMD 124 (771)
Q Consensus 47 ~~~~~~l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~~-~~i~~~~~D 124 (771)
++......+.|..++.. ...+.+..+||+-||||..+..+++. ...|+||++++.++..|.+.+...+ .|.+|+++-
T Consensus 361 FQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 361 FQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred hccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 33333444444444433 12256688999999999999999765 5699999999999999866554444 689999996
Q ss_pred cCCC
Q 004164 125 MTSM 128 (771)
Q Consensus 125 ~~~l 128 (771)
++++
T Consensus 440 aE~~ 443 (534)
T KOG2187|consen 440 AEDL 443 (534)
T ss_pred hhhc
Confidence 6554
No 473
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=94.92 E-value=0.037 Score=60.04 Aligned_cols=95 Identities=24% Similarity=0.293 Sum_probs=66.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 542 SVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 542 ~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
-..++++|+|.|.+...+...+|+ |..|+.|..-+..++.+++ + .+.-+.+|+++= .
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~---~-------------- 234 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD---T-------------- 234 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C---Ccceeccccccc---C--------------
Confidence 356899999999888888878876 8888888766666666654 2 267777887652 2
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEE-----eCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE--Eecc
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILII-----DVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV--NLVS 691 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~-----D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~--Nl~~ 691 (771)
.+=|+|++ |....| + ..||++|++.|.|+|.+++ |+.+
T Consensus 235 -------------------P~~daI~mkWiLhdwtDed-----------c--vkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 235 -------------------PKGDAIWMKWILHDWTDED-----------C--VKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -------------------CCcCeEEEEeecccCChHH-----------H--HHHHHHHHHhCCCCCEEEEEeccCC
Confidence 23357765 333222 1 6799999999999997775 4444
No 474
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.90 E-value=0.28 Score=48.67 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=94.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEE----EcchHHHHHhhccCCcccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECM-PFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVH----ITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~-p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~----i~Dg~~~l~~~~~~~~~~~ 615 (771)
+..+||.+|..-|+......+.. |+-.|.+|||-+ +.- -+...++ +.|-..+.+=..
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--~~Ga~~i~~~dvtdp~~~~ki~e------- 130 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--PEGATIIQGNDVTDPETYRKIFE------- 130 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--CCCcccccccccCCHHHHHHHHH-------
Confidence 35689999999999988877766 888999999843 211 1223333 334444432221
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcC-CcCcc--cHHHHHHHHHccCCCcEEEEEeccC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCP-AADFV--EGSFLLTVKDALSEQGLFIVNLVSR 692 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~p-p~~f~--~~~fl~~~~~~L~~~Gilv~Nl~~~ 692 (771)
..++.+.|+|+.|...... |+.-- +.... -.+.|.-....|.|+|.|+.-+|..
T Consensus 131 ---------------------~lp~r~VdvVlSDMapnaT--Gvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 131 ---------------------ALPNRPVDVVLSDMAPNAT--GVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred ---------------------hCCCCcccEEEeccCCCCc--CcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 0124789999999866532 22110 00011 1234455566688999999999876
Q ss_pred ChhHHHHHHHHHHHhccceEEeeec----CCccEEEEEecCCC
Q 004164 693 SQATKDMVISRMKMVFNHLFCLQLE----EDVNLVLFGLSSES 731 (771)
Q Consensus 693 ~~~~~~~v~~~l~~vF~~v~~~~~~----~~~N~Vl~a~~~~~ 731 (771)
+.+. .+..+|+++|..|..++.. +.....++|.+-+.
T Consensus 188 ~e~~--~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~ 228 (232)
T KOG4589|consen 188 SEEA--LLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKG 228 (232)
T ss_pred CchH--HHHHHHHHHhhhcEeeCCccccccccceeeeeeeccC
Confidence 6553 4678999999999888753 44567888887653
No 475
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.81 E-value=0.06 Score=51.13 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=44.3
Q ss_pred EEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEc
Q 004164 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT 598 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~ 598 (771)
+++||.|.|..+.++....|..+|.+||.+|.+.+.+++.+....-++++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 789999999999999999888899999999999999999874321134666654
No 476
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.71 E-value=0.11 Score=52.92 Aligned_cols=104 Identities=9% Similarity=-0.008 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-----CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC--------CCCCC
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-----GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ--------FMDET 134 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-----g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~--------~~~~s 134 (771)
+.+.|+|+|.-.|..+..+++. +.++|++||+.-..............++++++++|..+.. .....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4689999999999888777652 3479999999543332111111112378999999998752 11233
Q ss_pred ccEEEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 135 FDVILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 135 FDlVi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
..+|+.-..-.+ . . +.+.|+....++++|+++|+.+.
T Consensus 112 ~vlVilDs~H~~-~--h-----vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 112 PVLVILDSSHTH-E--H-----VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SEEEEESS-----S--S-----HHHHHHHHHHT--TT-EEEETSH
T ss_pred ceEEEECCCccH-H--H-----HHHHHHHhCccCCCCCEEEEEec
Confidence 446664322111 1 1 45778889999999999988654
No 477
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.028 Score=54.25 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC----CCCcEEEEeecCCC--CCCCCCccEE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD----RSDMRWRVMDMTSM--QFMDETFDVI 138 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~----~~~i~~~~~D~~~l--~~~~~sFDlV 138 (771)
..+.+|||+|.|--.++-.|... ....|...|-++..++...+..... ...+.....+...- ......||+|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiI 107 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDII 107 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEE
Confidence 45679999999966655444332 4468999999999998775543221 11222222222211 2334689999
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF 192 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~ 192 (771)
++..++..- + ..+.+++.|+++|+|.|.-++...-....++.+..+.
T Consensus 108 laADClFfd---E----~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~ 154 (201)
T KOG3201|consen 108 LAADCLFFD---E----HHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEV 154 (201)
T ss_pred EeccchhHH---H----HHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHH
Confidence 988877641 1 2568999999999999998777765444444444444
No 478
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=94.63 E-value=0.084 Score=54.87 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHH
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNL 580 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~v 580 (771)
....+|+||+|+|.++.+|.+. +..+|++||+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 4467999999999999999987 34589999999977754
No 479
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.55 E-value=0.15 Score=50.78 Aligned_cols=113 Identities=9% Similarity=0.080 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHH------HHHHHHhh-cCCCCcEEEEeecCCCCCCCCCccE
Q 004164 67 SPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVI------SDMLRRNV-RDRSDMRWRVMDMTSMQFMDETFDV 137 (771)
Q Consensus 67 ~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i------~~~~~~~~-~~~~~i~~~~~D~~~l~~~~~sFDl 137 (771)
+++.+|+|+=.|.|.++.-+... |. +.|++.-..+... ..+..... ....|...+-.+...+. +.+..|+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~ 125 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDL 125 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCcccc
Confidence 68999999999999999999876 32 4677765444311 11111110 11234555555555555 4466788
Q ss_pred EEeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 138 ILDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 138 Vi~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
++....-|-+....-......++...+++.|||||.|++.+..
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8764433322211111223789999999999999999998743
No 480
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=94.36 E-value=0.1 Score=56.77 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-------CCCCcEEEEEcCHHHHHHHHhhcCCC--CCCCeeEEEcchHHHHHhhccC
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHEC-------MPFVGIEAVELDLTMLNLAEDYFGFT--QDKSLKVHITDGIKFVREMKSS 610 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~-------~p~~~i~~VEiD~~v~~vA~~~Fg~~--~~~r~~v~i~Dg~~~l~~~~~~ 610 (771)
....+|++-.+|+|.+...+... .+...+.++|+|+..+.+|+-.+-+. ......+..+|.+.--...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~--- 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI--- 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc---
Confidence 34457999999999876655553 36679999999999999998765222 1233568888875431110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeC-CCCC----------CCCCCCcCCcCcccHHHHHHHHHcc
Q 004164 611 SATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDV-DSPD----------SSSGMTCPAADFVEGSFLLTVKDAL 679 (771)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~-~s~d----------~~~g~s~pp~~f~~~~fl~~~~~~L 679 (771)
...+||+||... +... ..-....++..-.+..|++.+.+.|
T Consensus 122 ----------------------------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~L 173 (311)
T PF02384_consen 122 ----------------------------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLL 173 (311)
T ss_dssp ----------------------------ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTE
T ss_pred ----------------------------cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhc
Confidence 136799999843 1111 0000001222233456999999999
Q ss_pred CCCcEEEEEe
Q 004164 680 SEQGLFIVNL 689 (771)
Q Consensus 680 ~~~Gilv~Nl 689 (771)
+++|.+++=+
T Consensus 174 k~~G~~~~Il 183 (311)
T PF02384_consen 174 KPGGRAAIIL 183 (311)
T ss_dssp EEEEEEEEEE
T ss_pred ccccceeEEe
Confidence 9999877654
No 481
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.36 E-value=0.29 Score=53.64 Aligned_cols=121 Identities=11% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCC-CCCeeEEEcchHHHHHhhccCCccccccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQ-DKSLKVHITDGIKFVREMKSSSATDEMSV 618 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~-~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~ 618 (771)
.....|+++=.|-|..+.-+...-. .+|.++||+|.-++..++..-+.. .+++..+.||+.++..+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----------- 254 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----------- 254 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-----------
Confidence 3467899998888866555555532 359999999999999999986642 456999999999997663
Q ss_pred ccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHH
Q 004164 619 VHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKD 698 (771)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~ 698 (771)
..+|-||+-... .+.+|+..+.++|+++|++-+-...++....+
T Consensus 255 ----------------------~~aDrIim~~p~--------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 255 ----------------------GVADRIIMGLPK--------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE 298 (341)
T ss_pred ----------------------ccCCEEEeCCCC--------------cchhhHHHHHHHhhcCcEEEEEeccchhhccc
Confidence 358999982211 34789999999999999999877777665433
Q ss_pred HHHHHHHHhc
Q 004164 699 MVISRMKMVF 708 (771)
Q Consensus 699 ~v~~~l~~vF 708 (771)
.....++...
T Consensus 299 ~~~~~i~~~~ 308 (341)
T COG2520 299 RPEKRIKSAA 308 (341)
T ss_pred chHHHHHHHH
Confidence 3444554444
No 482
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.31 E-value=0.23 Score=53.76 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=53.8
Q ss_pred CcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
..+++.=+|+|+-+..+.+.+|..+|.++|.||.+++.|++.+. ...+|++++.++-.++...+.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHH
Confidence 46888888999888888888777899999999999999998763 124699999999998866553
No 483
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.22 E-value=0.25 Score=53.01 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCCcEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc----CCCC--CCCeeEEEcchHHH-HHhhccCCc
Q 004164 541 KSVKAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF----GFTQ--DKSLKVHITDGIKF-VREMKSSSA 612 (771)
Q Consensus 541 ~~~~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F----g~~~--~~r~~v~i~Dg~~~-l~~~~~~~~ 612 (771)
....++++|+| ||-|..+..... ..+.++||-++-++-|++.. +... .=...++.+|-..- +.+.-
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~---- 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL---- 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc----
Confidence 34568899999 667877776665 47999999999999998765 2110 11357777776532 12211
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCccc----HHHHHHHHHccCCCcEEEEE
Q 004164 613 TDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVE----GSFLLTVKDALSEQGLFIVN 688 (771)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~----~~fl~~~~~~L~~~Gilv~N 688 (771)
+..+.+||+|=+-. |-+-.|.+ .-+|+++.++|+|||+|+-.
T Consensus 191 ------------------------e~~dp~fDivScQF----------~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 191 ------------------------EFKDPRFDIVSCQF----------AFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred ------------------------cCCCCCcceeeeee----------eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 11234588874311 11334443 34889999999999999987
Q ss_pred eccCChhHHHHHHHHHHHh
Q 004164 689 LVSRSQATKDMVISRMKMV 707 (771)
Q Consensus 689 l~~~~~~~~~~v~~~l~~v 707 (771)
+.. .. -++.+|++.
T Consensus 237 iPd--sd---~Ii~rlr~~ 250 (389)
T KOG1975|consen 237 IPD--SD---VIIKRLRAG 250 (389)
T ss_pred cCc--HH---HHHHHHHhc
Confidence 632 22 356666655
No 484
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.15 E-value=0.37 Score=53.43 Aligned_cols=102 Identities=23% Similarity=0.204 Sum_probs=74.0
Q ss_pred cEEEEecc-ccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEc-chHHHHHhhccCCcccccccccc
Q 004164 544 KAVVIGLG-AGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHIT-DGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 544 ~vLviGlG-~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~-Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
+|+|+|.| -|.++..+.+.++..+|.++|+++.=++.|+++++.. .+..... |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHh-------------
Confidence 89999999 6777788888888889999999999999999998752 1111111 4444444433
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCCh
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQ 694 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~ 694 (771)
.+..+|++|- .++ ....++.+.+.++++|.+++.-+....
T Consensus 235 -----------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 235 -----------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 1246999987 222 256899999999999999976655433
No 485
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=94.14 E-value=0.3 Score=53.36 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCccccccccc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVH 620 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~ 620 (771)
...++|+||.+.|+.+..|.+.. .+|++||..|.--. +..+++++.+.+||+.|...
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p~-------------- 267 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRPP-------------- 267 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechhcCHh-------hhCCCCEEEEeccCcccCCC--------------
Confidence 45689999999999999999884 59999996663322 23578999999999998432
Q ss_pred ccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCC--cEEEEEeccCCh---h
Q 004164 621 GNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQ--GLFIVNLVSRSQ---A 695 (771)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~--Gilv~Nl~~~~~---~ 695 (771)
...+|++++|+-.. | ...++.+.+-|..| .-+|+|+=-.-. +
T Consensus 268 -------------------~~~vDwvVcDmve~---------P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~ 314 (357)
T PRK11760 268 -------------------RKNVDWLVCDMVEK---------P-----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYE 314 (357)
T ss_pred -------------------CCCCCEEEEecccC---------H-----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHH
Confidence 25699999998554 2 35667777777554 578888743322 2
Q ss_pred HHHHHHHHHHHhc
Q 004164 696 TKDMVISRMKMVF 708 (771)
Q Consensus 696 ~~~~v~~~l~~vF 708 (771)
.....++.+.+.+
T Consensus 315 ~v~~~l~~i~~~l 327 (357)
T PRK11760 315 EVRQCLELIEEQL 327 (357)
T ss_pred HHHHHHHHHHHHH
Confidence 2334455555555
No 486
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.10 E-value=0.17 Score=56.10 Aligned_cols=128 Identities=13% Similarity=0.190 Sum_probs=75.2
Q ss_pred cEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccccc
Q 004164 544 KAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHGNE 623 (771)
Q Consensus 544 ~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~~~ 623 (771)
++|++=+|.|.++..|...+ .+|.+||+++..++.|++...+..-++++++.+++-++............+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~------ 270 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLK------ 270 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGG------
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhh------
Confidence 79999999999988898876 5899999999999999999855444679999999887754433100000000
Q ss_pred cccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEeccCChhHHHHHHHH
Q 004164 624 ITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNLVSRSQATKDMVISR 703 (771)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl~~~~~~~~~~v~~~ 703 (771)
........+|+||+|- |..|+ +..+++.+.+ +. - ++-+.|....+.+. +..
T Consensus 271 -----------~~~~~~~~~d~vilDP----PR~G~--------~~~~~~~~~~-~~---~-ivYvSCnP~tlaRD-l~~ 321 (352)
T PF05958_consen 271 -----------GIDLKSFKFDAVILDP----PRAGL--------DEKVIELIKK-LK---R-IVYVSCNPATLARD-LKI 321 (352)
T ss_dssp -----------GS-GGCTTESEEEE-------TT-S--------CHHHHHHHHH-SS---E-EEEEES-HHHHHHH-HHH
T ss_pred -----------hhhhhhcCCCEEEEcC----CCCCc--------hHHHHHHHhc-CC---e-EEEEECCHHHHHHH-HHH
Confidence 0001124699999963 23343 4777777764 32 2 34455655555554 344
Q ss_pred HHHhc
Q 004164 704 MKMVF 708 (771)
Q Consensus 704 l~~vF 708 (771)
|.+-|
T Consensus 322 L~~~y 326 (352)
T PF05958_consen 322 LKEGY 326 (352)
T ss_dssp HHCCE
T ss_pred HhhcC
Confidence 55544
No 487
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.10 E-value=0.22 Score=51.24 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEEcCCcchhHHHHHhc-CC-CeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCC---CCCCCccEE
Q 004164 64 PTSSPPPQILVPGCGNSRLSEHLYDA-GF-HGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQ---FMDETFDVI 138 (771)
Q Consensus 64 ~~~~~~~~ILDiGCG~G~ls~~La~~-g~-~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~---~~~~sFDlV 138 (771)
...+|+.+||-+|+++|....+..+. |. .-|+++++|+-.=.++... ++.++|+--+.-|+.... ..-.-.|+|
T Consensus 152 ihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nm-AkkRtNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINM-AKKRTNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred eeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHH-hhccCCceeeeccCCCchheeeeeeeEEEE
Confidence 44579999999999999998888886 33 5699999998665544332 345678888888887631 122356666
Q ss_pred EeccccccccCcccchHHHHHHHHHHHHccccCeEEEEEEc
Q 004164 139 LDKGGLDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTL 179 (771)
Q Consensus 139 i~~~~l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~ 179 (771)
++. +..++ ..+-+.-+.+..||+||-|++.--
T Consensus 231 FaD-----vaqpd----q~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 231 FAD-----VAQPD----QARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred ecc-----CCCch----hhhhhhhhhhhhhccCCeEEEEEe
Confidence 642 12222 255666788899999999988653
No 488
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.03 E-value=0.79 Score=47.64 Aligned_cols=103 Identities=19% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCcchhHHHHHhc-CCCeEEEEcCCHHHHHHHHHHhhcCCCCcEEEEeecCCCCCC---CCCccEEEeccc
Q 004164 68 PPPQILVPGCGNSRLSEHLYDA-GFHGITNVDFSKVVISDMLRRNVRDRSDMRWRVMDMTSMQFM---DETFDVILDKGG 143 (771)
Q Consensus 68 ~~~~ILDiGCG~G~ls~~La~~-g~~~V~~vDiS~~~i~~~~~~~~~~~~~i~~~~~D~~~l~~~---~~sFDlVi~~~~ 143 (771)
.+.+||-+|=+-- .+..++-. ..++|+.+|+++..++...+.+.+.+.+++.+..|+.+- +| .++||+++.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~-LP~~~~~~fD~f~T--- 118 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDP-LPEELRGKFDVFFT--- 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccccc-CCHHHhcCCCEEEe---
Confidence 5789999995543 23333333 356999999999999988877777776799999999873 33 379999994
Q ss_pred cccccCcccchHHHHHHHHHHHHccccCeEEEEEEcC
Q 004164 144 LDALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLA 180 (771)
Q Consensus 144 l~~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~ 180 (771)
+|......+.-++......||..|......++
T Consensus 119 -----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~ 150 (243)
T PF01861_consen 119 -----DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFT 150 (243)
T ss_dssp --------SSHHHHHHHHHHHHHTB-STT-EEEEEE-
T ss_pred -----CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEe
Confidence 44444556889999999999976644454554
No 489
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.99 E-value=0.11 Score=55.11 Aligned_cols=132 Identities=14% Similarity=0.194 Sum_probs=72.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhcCC-CCCCCeeEEEcchHHHHHhhccCCccc----
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYFGF-TQDKSLKVHITDGIKFVREMKSSSATD---- 614 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~Fg~-~~~~r~~v~i~Dg~~~l~~~~~~~~~~---- 614 (771)
..+.+|||=|.|.|-|+.-+... +..+++.|.+--|+=...--++. .+.+..+++ -|+....+....+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~-----Pf~~~~sn~~~~~dqlr 127 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIY-----PFVHSFSNQKSREDQLR 127 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEe-----cceecccCCCCHHHhCC
Confidence 45679999999999999988888 35999999999998544322232 223344443 2332221111100
Q ss_pred --ccccccccc------cccCCCCCCCCCCCCC--CCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcE
Q 004164 615 --EMSVVHGNE------ITSNNTRSCNGNCTAS--NARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGL 684 (771)
Q Consensus 615 --~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gi 684 (771)
..+.+++.. +=+...++.......+ ..+||+|+.= +=-|....+ .++++.+.++|+|||+
T Consensus 128 ~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFIDTA~Ni---------~~Yi~tI~~lLkpgG~ 197 (270)
T PF07942_consen 128 PVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFIDTAENI---------IEYIETIEHLLKPGGY 197 (270)
T ss_pred ceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEeechHHH---------HHHHHHHHHHhccCCE
Confidence 011111111 0011222222222222 4689998742 222322223 7899999999999994
Q ss_pred EEEEe
Q 004164 685 FIVNL 689 (771)
Q Consensus 685 lv~Nl 689 (771)
-+|+
T Consensus 198 -WIN~ 201 (270)
T PF07942_consen 198 -WINF 201 (270)
T ss_pred -EEec
Confidence 5576
No 490
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=93.98 E-value=0.21 Score=51.02 Aligned_cols=98 Identities=23% Similarity=0.358 Sum_probs=70.7
Q ss_pred EEEEeccccHHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 545 AVVIGLGAGLLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 545 vLviGlG~G~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
|++||+-=|.||.+|.+...-.++.++||.+.=++.|++.. |+ .+++.++.+||++-+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l--~~~i~~rlgdGL~~l~~~-------------- 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL--EDRIEVRLGDGLEVLKPG-------------- 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--GG--------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--cccEEEEECCcccccCCC--------------
Confidence 57899999999999999987779999999999999999886 54 579999999999976542
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEEEe
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIVNL 689 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~Nl 689 (771)
...|.|++ .|| ..-+-.++|+.....+...--||+.=
T Consensus 65 -------------------e~~d~ivI--------AGM----GG~lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 65 -------------------EDVDTIVI--------AGM----GGELIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -------------------G---EEEE--------EEE-----HHHHHHHHHHTGGGGTT--EEEEEE
T ss_pred -------------------CCCCEEEE--------ecC----CHHHHHHHHHhhHHHhccCCeEEEeC
Confidence 23688888 233 12245788888888887766788754
No 491
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.97 E-value=0.17 Score=50.65 Aligned_cols=106 Identities=14% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCCc---------EEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 541 KSVKAVVIGLGAGLLPMFLHECMPFVG---------IEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 541 ~~~~vLviGlG~G~l~~~L~~~~p~~~---------i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
....+++-=+|+|+++.-.....++.. +.++|+|+.+++.|++.+ |+ ...+.+...|+.++- ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~--~~~i~~~~~D~~~l~--~~ 103 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV--EDYIDFIQWDARELP--LP 103 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG--GT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc--CCceEEEecchhhcc--cc
Confidence 345799999999999866555555544 899999999999999987 44 456889999998763 11
Q ss_pred cCCcccccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCc---CcccHHHHHHHHHccCCCcEE
Q 004164 609 SSSATDEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAA---DFVEGSFLLTVKDALSEQGLF 685 (771)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~---~f~~~~fl~~~~~~L~~~Gil 685 (771)
...+|+|+.|.-= |...... .-+-..|++.+++.|++..++
T Consensus 104 -------------------------------~~~~d~IvtnPPy-----G~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 104 -------------------------------DGSVDAIVTNPPY-----GRRLGSKKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -------------------------------TSBSCEEEEE--S-----TTSHCHHHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -------------------------------cCCCCEEEECcch-----hhhccCHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 2579999997522 3222221 122356788888888884344
Q ss_pred E
Q 004164 686 I 686 (771)
Q Consensus 686 v 686 (771)
+
T Consensus 148 l 148 (179)
T PF01170_consen 148 L 148 (179)
T ss_dssp E
T ss_pred E
Confidence 3
No 492
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.78 E-value=0.45 Score=51.27 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCeEEEEcCCcchhHHHHHhc--CCCeEEEEcCCHHHHHHHHHHhhcC---CCCcEEEEeecCC-----CCCCCCCccEE
Q 004164 69 PPQILVPGCGNSRLSEHLYDA--GFHGITNVDFSKVVISDMLRRNVRD---RSDMRWRVMDMTS-----MQFMDETFDVI 138 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~--g~~~V~~vDiS~~~i~~~~~~~~~~---~~~i~~~~~D~~~-----l~~~~~sFDlV 138 (771)
.-++||||||.+..-..|... |. +++|+|+++..++.|++..... ..+|+++...-.. +..+++.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999999775444433 66 9999999999999987766544 2467776543221 12234689999
Q ss_pred Eecccccccc
Q 004164 139 LDKGGLDALM 148 (771)
Q Consensus 139 i~~~~l~~l~ 148 (771)
+|+-.+|.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999888743
No 493
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.77 E-value=0.26 Score=50.19 Aligned_cols=107 Identities=17% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCcEEEEecccc-HHHHH---HHHhCCCCcEEEEEcCHHHH-HHHHhhcCCCCCCCeeEEEcchHH--HHHhhccCCcc
Q 004164 541 KSVKAVVIGLGAG-LLPMF---LHECMPFVGIEAVELDLTML-NLAEDYFGFTQDKSLKVHITDGIK--FVREMKSSSAT 613 (771)
Q Consensus 541 ~~~~vLviGlG~G-~l~~~---L~~~~p~~~i~~VEiD~~v~-~vA~~~Fg~~~~~r~~v~i~Dg~~--~l~~~~~~~~~ 613 (771)
+|..|+.+|.--| ++..+ +....+..+|.+||||..-. ..|.+.-.+ .+|++++.||..+ .+.....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~--~~rI~~i~Gds~d~~~~~~v~~---- 105 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM--SPRITFIQGDSIDPEIVDQVRE---- 105 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG------TTEEEEES-SSSTHHHHTSGS----
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--cCceEEEECCCCCHHHHHHHHH----
Confidence 6788999999654 44433 22233677999999975433 334443333 5899999999873 3333220
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcCcccHHHHHHHHHccCCCcEEEE
Q 004164 614 DEMSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAADFVEGSFLLTVKDALSEQGLFIV 687 (771)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~f~~~~fl~~~~~~L~~~Gilv~ 687 (771)
........+||.|.+..-. + -..-|+....++++|+.+||
T Consensus 106 -----------------------~~~~~~~vlVilDs~H~~~---------h--vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 106 -----------------------LASPPHPVLVILDSSHTHE---------H--VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -----------------------S----SSEEEEESS----S---------S--HHHHHHHHHHT--TT-EEEE
T ss_pred -----------------------hhccCCceEEEECCCccHH---------H--HHHHHHHhCccCCCCCEEEE
Confidence 0112456688887653311 1 15557779999999999986
No 494
>PRK10742 putative methyltransferase; Provisional
Probab=93.70 E-value=0.22 Score=52.03 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHhhCCCCCCCCC--eEEEEcCCcchhHHHHHhcCCCeEEEEcCCHHHHHHHHHHhhcC------C----CCcEEEEee
Q 004164 57 LISLIGAPTSSPPP--QILVPGCGNSRLSEHLYDAGFHGITNVDFSKVVISDMLRRNVRD------R----SDMRWRVMD 124 (771)
Q Consensus 57 l~~~l~~~~~~~~~--~ILDiGCG~G~ls~~La~~g~~~V~~vDiS~~~i~~~~~~~~~~------~----~~i~~~~~D 124 (771)
|.+.+.. +++. +|||+-+|.|..+..++..|+ .|+++|-++.+.......+... . .+++++.+|
T Consensus 78 l~kAvgl---k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 78 VAKAVGI---KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred HHHHhCC---CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4444442 3455 999999999999999999998 6999999998877555443331 1 357888888
Q ss_pred cCCC-CCCCCCccEEEecccccc
Q 004164 125 MTSM-QFMDETFDVILDKGGLDA 146 (771)
Q Consensus 125 ~~~l-~~~~~sFDlVi~~~~l~~ 146 (771)
..+. .-...+||+|+.--.+.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7664 212247999996544433
No 495
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.69 E-value=0.2 Score=51.00 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCCcEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhc
Q 004164 554 LLPMFLHECMPFVGIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMK 608 (771)
Q Consensus 554 ~l~~~L~~~~p~~~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~ 608 (771)
....|..++ ..|.+|||||.-+..||... |. .+|+++++||-++....+.
T Consensus 108 ntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI--~~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730|consen 108 NTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGV--PDRITFICGDFLDLASKLK 160 (263)
T ss_pred hHHHHHHhC---CeEEEEeccHHHHHHHhccceeecC--CceeEEEechHHHHHHHHh
Confidence 343444443 36999999999999999887 65 3399999999999877765
No 496
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.60 E-value=0.34 Score=53.70 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=104.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhc---CCCCCCCeeEEEcchHHHHHhhccCCcccc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYF---GFTQDKSLKVHITDGIKFVREMKSSSATDE 615 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiD~~v~~vA~~~F---g~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~ 615 (771)
....|||.+..--|.=+.+++.++.+. .|.+-|.+..-+..-+..+ |+ ...-+...||.+|-++.-
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~------- 309 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEF------- 309 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCccccccccc-------
Confidence 456799999999887778888888664 8888888887777665554 54 457788899997732211
Q ss_pred cccccccccccCCCCCCCCCCCCCCCceeEEEEeCCCCCCCCCCCcCCcC--------------cccHHHHHHHHHccCC
Q 004164 616 MSVVHGNEITSNNTRSCNGNCTASNARVDILIIDVDSPDSSSGMTCPAAD--------------FVEGSFLLTVKDALSE 681 (771)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~d~~~g~s~pp~~--------------f~~~~fl~~~~~~L~~ 681 (771)
...||-|++|+-.+.. |+-.-++. -+..+.|..+.+++++
T Consensus 310 ------------------------~~~fDRVLLDAPCSGt--gvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~ 363 (460)
T KOG1122|consen 310 ------------------------PGSFDRVLLDAPCSGT--GVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA 363 (460)
T ss_pred ------------------------CcccceeeecCCCCCC--cccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC
Confidence 2379999999855421 22222222 2456788889999999
Q ss_pred CcEEEEEeccCChhHHHHHHHHHHHhccceEEeee
Q 004164 682 QGLFIVNLVSRSQATKDMVISRMKMVFNHLFCLQL 716 (771)
Q Consensus 682 ~Gilv~Nl~~~~~~~~~~v~~~l~~vF~~v~~~~~ 716 (771)
||+||....+-..+..+.+++-.-.-|+++-..+.
T Consensus 364 GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 364 GGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred CcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence 99999999888888889999998888988766654
No 497
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.52 E-value=0.37 Score=51.51 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=62.4
Q ss_pred CcEEEEeccccHHHHHHHHhCCCC-cEEEEEcCHHHHHHHHhhcCCCCCCCeeEEEcchHHHHHhhccCCcccccccccc
Q 004164 543 VKAVVIGLGAGLLPMFLHECMPFV-GIEAVELDLTMLNLAEDYFGFTQDKSLKVHITDGIKFVREMKSSSATDEMSVVHG 621 (771)
Q Consensus 543 ~~vLviGlG~G~l~~~L~~~~p~~-~i~~VEiD~~v~~vA~~~Fg~~~~~r~~v~i~Dg~~~l~~~~~~~~~~~~~~~~~ 621 (771)
.-.++.=+|+|+-+..+.+.+|.. +++++|-||..++.|++.+- .-++|++++.+.-..+-.....
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~-~~~~r~~~v~~~F~~l~~~l~~------------ 91 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK-EFDGRVTLVHGNFANLAEALKE------------ 91 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh-ccCCcEEEEeCcHHHHHHHHHh------------
Confidence 456777889999999888888865 59999999999999999872 2358999998876655444331
Q ss_pred cccccCCCCCCCCCCCCCCCceeEEEEeCCCC
Q 004164 622 NEITSNNTRSCNGNCTASNARVDILIIDVDSP 653 (771)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~yDvIi~D~~s~ 653 (771)
....++|=|++|+--+
T Consensus 92 ----------------~~i~~vDGiL~DLGVS 107 (314)
T COG0275 92 ----------------LGIGKVDGILLDLGVS 107 (314)
T ss_pred ----------------cCCCceeEEEEeccCC
Confidence 1136799999998433
No 498
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.50 E-value=0.16 Score=57.68 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=78.5
Q ss_pred CCeEEEEcCCcchhHHHHHhcCCCeEEEEcC--CHHHHHHHHHHhhcCCCCcEEEEeec-CCCCCCCCCccEEEeccccc
Q 004164 69 PPQILVPGCGNSRLSEHLYDAGFHGITNVDF--SKVVISDMLRRNVRDRSDMRWRVMDM-TSMQFMDETFDVILDKGGLD 145 (771)
Q Consensus 69 ~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi--S~~~i~~~~~~~~~~~~~i~~~~~D~-~~l~~~~~sFDlVi~~~~l~ 145 (771)
-..|+|...|.|.++..|.+.+. =|.+|=. .+..+...-.| + -+- .-.|. +.++.-..+||+|.+.+.|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~vIydR----G-LIG-~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPVIYDR----G-LIG-VYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchhhhhc----c-cch-hccchhhccCCCCcchhheehhhhhh
Confidence 45899999999999999988764 2333321 12122111111 1 011 11222 23444458999999999888
Q ss_pred cccCcccchHHHHHHHHHHHHccccCeEEEEEEcCcchhhcchhhhh-ccCcEEEEeecC
Q 004164 146 ALMEPELGHKLGNQYLSEVKRLLKSGGKFVCLTLAESHVLGLLFPKF-RFGWKMSVHAIP 204 (771)
Q Consensus 146 ~l~~~~~~~~~~~~~l~~i~rvLkpGG~~ii~~~~~~~~~~~l~~~~-~~~w~~~~~~i~ 204 (771)
...+.- .+..++-|+-|+|+|||.+++-+.. .+...+...+ ...|...+....
T Consensus 439 ~~~~rC----~~~~illEmDRILRP~G~~iiRD~~--~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 439 LYKDRC----EMEDILLEMDRILRPGGWVIIRDTV--DVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred hhcccc----cHHHHHHHhHhhcCCCceEEEeccH--HHHHHHHHHHHhCcceEEEEecC
Confidence 765432 2789999999999999999987754 4444444433 337988887653
No 499
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.45 E-value=0.52 Score=50.47 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=40.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-CcEEEEEcCHHHHHHHHhhc
Q 004164 540 GKSVKAVVIGLGAGLLPMFLHECMPF-VGIEAVELDLTMLNLAEDYF 585 (771)
Q Consensus 540 ~~~~~vLviGlG~G~l~~~L~~~~p~-~~i~~VEiD~~v~~vA~~~F 585 (771)
=.|.+||++|.|.|+....+...++. .++++||.++.++++|+.-+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 46789999999999988888888874 48999999999999998876
No 500
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.37 E-value=0.12 Score=46.81 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHhhCC-CCCCCCCeEEEEcCCcchhHHHHHhcCCCeEEEEcC
Q 004164 53 LRDPLISLIGA-PTSSPPPQILVPGCGNSRLSEHLYDAGFHGITNVDF 99 (771)
Q Consensus 53 l~~~l~~~l~~-~~~~~~~~ILDiGCG~G~ls~~La~~g~~~V~~vDi 99 (771)
+...|..+... ....+.....|||||||.+..-|...|+ .=.|+|.
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 33445554443 1123567899999999999999999998 6788885
Done!