Query 004166
Match_columns 770
No_of_seqs 418 out of 2137
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 18:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 2E-115 5E-120 1002.1 49.6 678 33-768 33-726 (834)
2 PRK10199 alkaline phosphatase 100.0 3.6E-27 7.7E-32 255.3 27.8 262 53-331 30-345 (346)
3 PF04389 Peptidase_M28: Peptid 100.0 1.6E-28 3.6E-33 244.9 10.1 167 146-314 2-179 (179)
4 KOG2195 Transferrin receptor a 99.9 3.3E-27 7.1E-32 274.8 16.6 274 124-406 334-633 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.7 1.8E-17 3.9E-22 170.0 15.1 247 51-324 48-332 (338)
6 COG2234 Iap Predicted aminopep 99.7 6.7E-17 1.5E-21 183.4 14.3 188 127-324 183-390 (435)
7 TIGR03176 AllC allantoate amid 99.5 2.7E-13 5.9E-18 152.9 14.6 127 54-212 3-141 (406)
8 PRK09133 hypothetical protein; 99.4 3.9E-12 8.4E-17 146.2 18.9 151 49-226 32-203 (472)
9 PRK12891 allantoate amidohydro 99.4 2.4E-12 5.3E-17 145.4 16.1 129 50-210 6-146 (414)
10 PRK12890 allantoate amidohydro 99.4 3.4E-12 7.5E-17 144.1 16.0 128 52-211 7-145 (414)
11 PRK08596 acetylornithine deace 99.4 9.8E-12 2.1E-16 140.8 17.7 145 54-228 13-179 (421)
12 TIGR01879 hydantase amidase, h 99.4 4.9E-12 1.1E-16 142.4 15.0 126 55-212 2-139 (401)
13 PRK13590 putative bifunctional 99.4 4.4E-12 9.6E-17 149.3 15.1 127 52-210 179-321 (591)
14 PRK13799 unknown domain/N-carb 99.4 4.4E-12 9.5E-17 149.3 14.2 127 52-210 179-321 (591)
15 PRK06133 glutamate carboxypept 99.4 1.9E-11 4.2E-16 138.0 18.7 144 54-228 37-198 (410)
16 PRK09290 allantoate amidohydro 99.4 9.5E-12 2.1E-16 140.5 16.1 130 51-212 4-145 (413)
17 PRK07473 carboxypeptidase; Pro 99.4 2E-11 4.4E-16 136.3 18.3 150 51-229 8-175 (376)
18 PF09940 DUF2172: Domain of un 99.3 3.5E-11 7.6E-16 130.1 18.5 242 50-330 56-308 (386)
19 PRK08262 hypothetical protein; 99.3 2.2E-11 4.7E-16 140.5 17.0 134 48-211 38-201 (486)
20 PRK12892 allantoate amidohydro 99.3 2.6E-11 5.7E-16 136.7 16.0 129 51-212 7-146 (412)
21 PRK12893 allantoate amidohydro 99.3 2.4E-11 5.3E-16 137.0 15.5 129 52-212 8-148 (412)
22 PRK08588 succinyl-diaminopimel 99.3 4.8E-11 1E-15 132.9 16.2 141 53-227 1-162 (377)
23 TIGR01910 DapE-ArgE acetylorni 99.3 5E-11 1.1E-15 132.8 15.9 146 58-228 2-168 (375)
24 PRK07338 hypothetical protein; 99.3 6.7E-11 1.5E-15 133.0 16.9 158 53-228 16-191 (402)
25 PRK13013 succinyl-diaminopimel 99.3 9.4E-11 2E-15 132.8 18.0 154 54-228 14-189 (427)
26 PRK07906 hypothetical protein; 99.3 4.9E-11 1.1E-15 135.2 15.2 130 57-213 2-155 (426)
27 TIGR01880 Ac-peptdase-euk N-ac 99.2 1.7E-10 3.7E-15 129.7 17.1 148 50-226 5-174 (400)
28 PRK07907 hypothetical protein; 99.2 2E-10 4.3E-15 131.3 17.5 144 53-228 17-185 (449)
29 PRK06446 hypothetical protein; 99.2 1.6E-10 3.4E-15 131.6 16.1 142 54-228 2-165 (436)
30 PRK09104 hypothetical protein; 99.2 3.4E-10 7.3E-15 129.9 18.4 146 53-227 16-191 (464)
31 PRK04443 acetyl-lysine deacety 99.2 2.3E-10 5E-15 126.4 15.5 134 52-228 4-149 (348)
32 PRK13983 diaminopimelate amino 99.2 4.8E-10 1E-14 125.6 18.1 150 54-226 5-181 (400)
33 PF05450 Nicastrin: Nicastrin; 99.2 3.2E-10 7E-15 118.2 14.8 165 145-310 1-200 (234)
34 PRK08201 hypothetical protein; 99.2 3.5E-10 7.6E-15 129.5 16.5 147 54-228 14-184 (456)
35 PRK06915 acetylornithine deace 99.2 5E-10 1.1E-14 126.8 17.4 157 54-227 17-194 (422)
36 COG4882 Predicted aminopeptida 99.2 2.4E-10 5.3E-15 121.4 13.4 152 128-306 178-342 (486)
37 TIGR01893 aa-his-dipept aminoa 99.2 3.2E-10 6.9E-15 130.6 15.5 136 53-227 3-165 (477)
38 TIGR01883 PepT-like peptidase 99.2 4.3E-10 9.4E-15 124.5 15.7 128 55-211 1-146 (361)
39 PRK07079 hypothetical protein; 99.2 5.4E-10 1.2E-14 128.5 16.5 150 51-227 14-191 (469)
40 PRK05469 peptidase T; Provisio 99.1 6.6E-10 1.4E-14 125.4 16.1 140 55-227 3-199 (408)
41 PRK06837 acetylornithine deace 99.1 1E-09 2.3E-14 124.6 17.5 155 54-227 20-198 (427)
42 PRK15026 aminoacyl-histidine d 99.1 1.1E-09 2.4E-14 126.2 17.9 138 51-227 7-171 (485)
43 PRK07522 acetylornithine deace 99.1 7.7E-10 1.7E-14 123.5 15.5 141 54-227 4-166 (385)
44 KOG2275 Aminoacylase ACY1 and 99.1 1.5E-09 3.3E-14 118.4 16.2 144 52-228 27-193 (420)
45 PRK00466 acetyl-lysine deacety 99.1 1.1E-09 2.4E-14 120.9 15.4 129 53-228 9-149 (346)
46 PRK07318 dipeptidase PepV; Rev 99.1 1.1E-09 2.4E-14 125.8 15.8 126 54-213 14-167 (466)
47 TIGR01892 AcOrn-deacetyl acety 99.1 1.1E-09 2.4E-14 121.1 15.1 136 59-227 2-157 (364)
48 PRK13381 peptidase T; Provisio 99.1 1.4E-09 3.1E-14 122.5 16.0 121 74-227 27-197 (404)
49 PRK06156 hypothetical protein; 99.1 2.9E-09 6.2E-14 124.0 18.8 137 53-226 45-213 (520)
50 PRK08652 acetylornithine deace 99.1 1.5E-09 3.3E-14 119.2 15.5 131 54-227 2-144 (347)
51 PRK13007 succinyl-diaminopimel 99.1 2.1E-09 4.6E-14 118.5 16.0 134 53-227 6-156 (352)
52 PRK07205 hypothetical protein; 99.1 2.1E-09 4.5E-14 122.8 15.9 128 52-213 9-165 (444)
53 PRK05111 acetylornithine deace 99.1 2.7E-09 6E-14 119.1 16.5 140 54-226 5-169 (383)
54 PRK13009 succinyl-diaminopimel 99.1 2.4E-09 5.3E-14 119.1 16.0 139 55-227 3-164 (375)
55 PRK08651 succinyl-diaminopimel 99.1 2.8E-09 6.2E-14 119.4 16.6 148 53-228 5-173 (394)
56 TIGR01882 peptidase-T peptidas 99.1 2.3E-09 5E-14 121.2 16.0 128 54-210 3-187 (410)
57 KOG2526 Predicted aminopeptida 99.0 7.6E-09 1.7E-13 112.3 17.2 195 126-324 191-414 (555)
58 COG0624 ArgE Acetylornithine d 99.0 3.7E-09 8E-14 119.3 15.6 142 56-226 15-180 (409)
59 PRK08554 peptidase; Reviewed 99.0 5.8E-09 1.2E-13 119.0 16.6 140 56-228 3-166 (438)
60 COG1363 FrvX Cellulase M and r 99.0 2.4E-08 5.2E-13 109.4 19.8 150 162-329 178-348 (355)
61 TIGR01886 dipeptidase dipeptid 99.0 5.1E-09 1.1E-13 120.4 14.8 126 54-213 13-166 (466)
62 TIGR01246 dapE_proteo succinyl 99.0 8.3E-09 1.8E-13 114.7 16.0 135 58-226 3-160 (370)
63 PRK13004 peptidase; Reviewed 99.0 9.7E-09 2.1E-13 115.6 16.6 135 54-227 15-172 (399)
64 PF01546 Peptidase_M20: Peptid 98.9 3.3E-09 7.1E-14 105.9 10.4 166 148-325 1-188 (189)
65 TIGR01902 dapE-lys-deAc N-acet 98.9 8.6E-09 1.9E-13 113.2 14.1 124 60-228 3-138 (336)
66 TIGR01900 dapE-gram_pos succin 98.9 1.4E-08 3E-13 113.5 14.8 135 60-228 2-171 (373)
67 TIGR03106 trio_M42_hydro hydro 98.9 7.1E-08 1.5E-12 106.5 20.0 145 162-324 181-339 (343)
68 TIGR01887 dipeptidaselike dipe 98.9 2.2E-08 4.7E-13 114.6 14.6 124 55-212 3-154 (447)
69 TIGR03107 glu_aminopep glutamy 98.8 1.7E-07 3.7E-12 103.6 20.1 146 162-327 176-341 (350)
70 TIGR01891 amidohydrolases amid 98.8 6.1E-08 1.3E-12 107.7 15.8 133 58-228 3-152 (363)
71 PRK09961 exoaminopeptidase; Pr 98.8 2.5E-07 5.4E-12 102.3 19.5 150 161-327 163-333 (344)
72 TIGR03320 ygeY M20/DapE family 98.8 8.8E-08 1.9E-12 107.7 15.9 135 54-226 13-169 (395)
73 TIGR03526 selenium_YgeY putati 98.8 1E-07 2.3E-12 107.1 16.4 135 54-226 13-169 (395)
74 PRK08737 acetylornithine deace 98.8 7.5E-08 1.6E-12 107.3 14.7 132 53-228 5-157 (364)
75 PRK09864 putative peptidase; P 98.7 5.9E-07 1.3E-11 99.3 19.5 146 162-327 173-341 (356)
76 COG4310 Uncharacterized protei 98.7 2.7E-07 5.9E-12 96.9 13.4 195 98-329 152-355 (435)
77 PLN02693 IAA-amino acid hydrol 98.6 5.3E-07 1.1E-11 103.0 15.8 123 58-212 47-183 (437)
78 COG4187 RocB Arginine degradat 98.6 3.5E-07 7.7E-12 100.2 12.7 157 51-229 5-209 (553)
79 PLN02280 IAA-amino acid hydrol 98.6 1E-06 2.3E-11 101.5 17.3 135 56-223 95-243 (478)
80 KOG2276 Metalloexopeptidases [ 98.2 1.3E-05 2.8E-10 87.5 12.6 153 53-225 15-195 (473)
81 PF05343 Peptidase_M42: M42 gl 97.9 2.9E-05 6.2E-10 84.1 7.9 131 162-306 132-282 (292)
82 KOG2657 Transmembrane glycopro 97.7 0.00019 4.1E-09 80.5 11.1 186 127-313 156-374 (596)
83 COG1473 AbgB Metal-dependent a 96.7 0.031 6.8E-07 63.0 15.2 138 57-226 11-164 (392)
84 COG2195 PepD Di- and tripeptid 96.2 0.013 2.7E-07 66.4 8.1 60 163-225 143-203 (414)
85 PF04114 Gaa1: Gaa1-like, GPI 94.4 0.25 5.5E-06 57.7 11.1 98 128-234 3-114 (504)
86 PRK02256 putative aminopeptida 80.8 2.2 4.7E-05 49.4 5.1 45 160-208 256-300 (462)
87 COG1362 LAP4 Aspartyl aminopep 71.8 22 0.00048 40.4 9.6 71 74-156 20-90 (437)
88 PRK02813 putative aminopeptida 64.4 5.7 0.00012 45.6 3.3 43 160-207 230-275 (428)
89 KOG3566 Glycosylphosphatidylin 63.4 29 0.00063 40.8 8.6 75 128-212 120-194 (617)
90 PTZ00371 aspartyl aminopeptida 55.2 16 0.00034 42.5 4.8 49 160-208 247-296 (465)
91 PRK13755 putative mercury tran 38.0 1.3E+02 0.0029 28.5 7.0 46 409-457 39-87 (139)
92 PRK02813 putative aminopeptida 33.7 1.5E+02 0.0033 34.2 8.4 69 77-157 21-89 (428)
93 COG3152 Predicted membrane pro 33.5 3.8E+02 0.0083 25.5 9.7 22 536-560 73-94 (125)
94 PF05656 DUF805: Protein of un 25.2 5.3E+02 0.011 23.5 10.2 9 535-543 67-75 (120)
95 PTZ00371 aspartyl aminopeptida 23.7 1.6E+02 0.0034 34.4 6.3 69 77-157 22-91 (465)
96 PF01102 Glycophorin_A: Glycop 21.1 1.4E+02 0.0031 28.3 4.3 31 9-39 64-94 (122)
97 COG1480 Predicted membrane-ass 20.7 1.6E+03 0.035 27.6 14.3 32 591-622 434-465 (700)
98 TIGR02789 nickel_nikB nickel A 20.3 1.1E+03 0.024 25.5 19.3 65 402-466 93-157 (314)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.5e-115 Score=1002.09 Aligned_cols=678 Identities=26% Similarity=0.439 Sum_probs=578.6
Q ss_pred HHhhccCCCCC---CCCCcCcccHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHHhcccccCC-ceeEEEEEee
Q 004166 33 IVHLKFVKPLD---SDAPLDRFSEARAIQHVRVLADEIGDRQEGRPGLR-EAAVYIKTQLEGIKERAGP-KFRIEIEENV 107 (770)
Q Consensus 33 ~~~~~~~~p~~---~~~~~~~Fs~era~~~l~~L~~~ig~R~~gS~~~e-~a~~yl~~~l~~ig~~~~~-~~~vev~~~~ 107 (770)
..+.+.+.|++ ++..+++|+++||++++++++ ++|||++||++|| ++++|+.+|+++++.+.+. .+++|+|.|.
T Consensus 33 ~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls-~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~ 111 (834)
T KOG2194|consen 33 YLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLS-AAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQS 111 (834)
T ss_pred HHHhhccccCCCcchhcCchhhHHHHHHHHHHHHH-hcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceee
Confidence 34555555544 334478999999999999999 8999999999999 8999999999999876654 3689999999
Q ss_pred ecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCC
Q 004166 108 VNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPP 187 (770)
Q Consensus 108 ~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~ 187 (770)
.+|+|. -+.+++.|++++||++|+++++. .++.+|+++||+||||++|||+||++|||+|||++|++.+.....+
T Consensus 112 ~sg~~~----~~~~~~~Y~~i~NIvVki~~k~~-~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~ 186 (834)
T KOG2194|consen 112 ASGSFI----LEGMTLVYQNISNIVVKISPKNG-NDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSDKLLT 186 (834)
T ss_pred ccceee----ehhhhheeeeeeeEEEecCCCCC-CccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCCCccc
Confidence 999884 35788999999999999999864 3446999999999999999999999999999999999999877789
Q ss_pred CCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCCCCCceEEeeCCCCchhhHhhhhccCccccccccccC--
Q 004166 188 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVF-- 265 (770)
Q Consensus 188 ~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~gg~~~lfq~gp~~~~~~~y~~~~~~p~~~~l~~e~f-- 265 (770)
|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++++||+||++|+++.|.++++||+++++++|.|
T Consensus 187 ~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee~Fq~ 266 (834)
T KOG2194|consen 187 HSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEELFQS 266 (834)
T ss_pred ccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CCCCCCCchHHHhccCCCCcEEEEEEecCCccCcCcCcccCCCCHHHHHHHHHHHHHHHHHHhcCcCccccchhhhhhhc
Q 004166 266 PVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNSSKLQNAHDRASFEAT 345 (770)
Q Consensus 266 ~~ips~tD~~~F~~~~~gIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a~~l~~~~~~~~~~~~ 345 (770)
|++||+|||++|+ +|+|+||+|+|+..|++.|||++|.++++.|+++||+|||++++++.++|+ ++.+..++
T Consensus 267 g~IpSdTDfrif~-eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~~~~~------ 338 (834)
T KOG2194|consen 267 GIIPSDTDFRIFR-EYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDNSTER------ 338 (834)
T ss_pred CcCccccchHHHH-HhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcccccc------
Confidence 8999999999996 699999999999999999999999999999999999999999999999998 56654333
Q ss_pred cCCCCCCCeeEccchhHhhhhccHHHHHHHhhhhHHHhhccceEEEEecccchhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004166 346 GIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSDFVKGMMIHATGKMLAIIFP 425 (770)
Q Consensus 346 ~~~~~~~~~V~fd~lg~~~v~y~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (770)
.++ .||||++|++++.|+++++.+||.++.... ++...+.+.. + +.++...++++++++++++++|
T Consensus 339 ----~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~~~i-----~l~~~~~g~~---~-~~~f~~~~~~~i~s~~~~~~l~ 404 (834)
T KOG2194|consen 339 ----SKG-TVYFDVVGKYFLAYSESTGVILNITICISI-----WLMSLRSGSS---Q-LGKFILACLLQILSIVVAIGLP 404 (834)
T ss_pred ----CCC-ceehhhhhhhhheeehhhhhhhhhhhhhhh-----hhhhhcccch---h-hhhHHHHHHHHHHHHHHHHhhH
Confidence 245 999999999999999999999993332221 1111111111 2 6788888999999999999999
Q ss_pred HHHHHHHHHhcCCeeeecchhhHHHHHHHHHHHHHHHHHHhhhccCCcchhhhhhhhcccccch--hHHHHHHHHHHHHH
Q 004166 426 IAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRSLWSHFPLSQDAMLLKTSKEALSD--EARFWGAFGFYAML 503 (770)
Q Consensus 426 ~~~a~~~~~~~~~~msw~s~~~l~~~ly~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 503 (770)
+++|+++.. .+.+|+||++||+++++|.||+++|+.+++.+|.++.| ..+....+ |..+++ +++.|
T Consensus 405 ~~~a~~l~~-v~l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~~~--------~~~~~~~~~~ql~~h~---~l~~l 472 (834)
T KOG2194|consen 405 VLVALFLDW-VGLPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKRSK--------RHSLEYLQHDQLLLHS---LLSIL 472 (834)
T ss_pred HHHHHHhhc-ccccceeecchHHHHHHHHhHHHHHhhHHHHHHHhhcc--------ccccchhhHHHHHHHH---HHHHH
Confidence 999987665 47799999999999999999999999999998876554 22222323 333333 78899
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhHHHHHHHHhhhcccCCcchhhHHHHhhhHHHHHHHHHHHHHHHHHhHhcCCCCCCCC
Q 004166 504 TMAYLVAGLTGGFLTFIVATSMLPAWIFFCISINFYGRRSLRSTLFYVVPLIPCITYSVYFGGFVVQFLIEKMGMMGAFP 583 (770)
Q Consensus 504 ~~~~~~~gi~s~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~fip~~Gr~G~~~ 583 (770)
++++|++||||+|+++++++|++++++++ +..+++.++. .+..++++||++|+.+.+|.++.++.+|||||||.|.+.
T Consensus 473 ~~~~t~y~I~S~y~~~~~~~~~v~~~~~~-~~~~l~~~~~-~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g~~~ 550 (834)
T KOG2194|consen 473 LIIMTYYGIRSAYLPLLLLLFYVISYLLN-TLTILHLCGT-LYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRFGNAS 550 (834)
T ss_pred HHHheecccchhHHHHHHHHHHHHHHHHh-hceeeccCCc-eeeeeeeeeehHhHHHHHHHHHHHHHeeeccccccCCCC
Confidence 99999999999999999999999999875 4455554443 345689999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhhchHHHHHhhhhhhHHHHHHHHHHH--HHHhhcCCCccCC-CCCcceEEEEEEEEe
Q 004166 584 SPYGYYVQDIVVAAAVGAVTGWCVGPLLPICGLWLARSSVLQFLLHLTV--LALALSSQFFPYS-TGAHKRLVFQHTFVT 660 (770)
Q Consensus 584 ~p~~~~~pd~iia~~~~~~~~~~~~~l~pl~~~~~~~~~i~~~l~~~~~--~~~~~~~~~FPY~-~~~pkRv~v~H~~~~ 660 (770)
| ||.+||.++++.+.++++|++|+++++++++.++.++++++. +.+++++.+|||+ ++++||+.++|+.|+
T Consensus 551 n------Pd~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~~rt 624 (834)
T KOG2194|consen 551 N------PDLSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHVRRT 624 (834)
T ss_pred C------chHHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEecccc
Confidence 9 899999999999999999999999998887888887777665 3446799999999 689999999998887
Q ss_pred ---cCCCc-eeeccccceecCCCccccccccchhhhhhhccCCCcchhhccccCCCccccccccccccccceeccCCCCC
Q 004166 661 ---ADANQ-IVESSFDFSVVDSNSFLFLFKFAPEVAKELHIGPEFSLEAANVSQRETWMVLFPVSFLFSKSLKFPATSDE 736 (770)
Q Consensus 661 ---~~g~~-~~~sg~~~~~~D~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~c~~p~~~~~Pv~~~~~~s~~lP~~~~~ 736 (770)
.+|++ +.|||||++.+|||+.+.+...-...+++....++| +++++||.|+ |+|.+....++|+|.|+|.
T Consensus 625 f~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~c~~p~---y~w~~~~~~~~~vp~~~~v 698 (834)
T KOG2194|consen 625 FYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADC---DDEMMCGMPV---YNWIKPREQSLWVPNPEPV 698 (834)
T ss_pred eecccCceeecccceeeeecccccccCCcchhhcccccccccccc---cccccCCcee---eeccccCccceEecCCccc
Confidence 56666 789999999999999876654444455555566777 4568999999 4599999999999998776
Q ss_pred ccccCCCCcccccccCcccCCCCeEEEEEEEE
Q 004166 737 ISKQYEYFPYLSTSKPHTTSGDGSRRVYLELS 768 (770)
Q Consensus 737 ~~~~~~~~~~ls~~~~~~~~~~~trr~~fe~~ 768 (770)
..+..+++++++++.. .+++.|++|++.
T Consensus 699 ~~~~~~~l~l~sk~~~----~~~~~r~~~~i~ 726 (834)
T KOG2194|consen 699 IGPYPPNLKLLSKTSL----DNGNLRYEFSIT 726 (834)
T ss_pred cCCCCceEEEeecccc----CCCceEEEEEEe
Confidence 6666677888888754 478999999986
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.96 E-value=3.6e-27 Score=255.26 Aligned_cols=262 Identities=18% Similarity=0.179 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
.+-|.+++++++..+++|..||++++++++||.++|+++| ++++++.... .|...-.............|||
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG------~~v~~q~f~~--~~~~~~~~g~~~~~~~~g~nVI 101 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMG------YQSDIRTFNS--RYIYTARDNRKNWHNVTGSTVI 101 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCC------CceEeeeccc--cceeecccccccccCCccceEE
Confidence 3348889999998999999999999999999999999999 4455433211 1100000000000112457999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 198 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~E 198 (770)
++++|+. ++.|+++||+|||++ ++||+||++|||+|||++|.|++. +++++|.|+++++|
T Consensus 102 a~~~G~~----~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~E 175 (346)
T PRK10199 102 AAHEGKA----PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATSGE 175 (346)
T ss_pred EEECCCC----CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCc
Confidence 9999853 367999999999852 479999999999999999999865 47889999999999
Q ss_pred cCCccChHHHHhhccc--cCceeEEEEeccCCCCCCceEEeeCCCC--ch---hhHhhhhccCccccccccc-----cC-
Q 004166 199 ELFMLGAHGFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPSS--WP---SSVYAQSAIYPMAHSAAQD-----VF- 265 (770)
Q Consensus 199 E~gl~GS~~fi~~~~~--~~~i~a~INlD~~G~gg~~~lfq~gp~~--~~---~~~y~~~~~~p~~~~l~~e-----~f- 265 (770)
|.|+.||+.|+++.+. .+++.++||+|+.+.+ ....+.+|.+. .. .......+....+..+..+ .+
T Consensus 176 E~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g~~~~~~~~~~~~~p 254 (346)
T PRK10199 176 EEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIARRHGIAATTNPGLNKNYP 254 (346)
T ss_pred ccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHHHHcCCccccCCCcccccc
Confidence 9999999999987542 4789999999999875 34455555431 11 0000111111122222111 11
Q ss_pred CCCCCCCchHHHhccCCCCcEEEEEEec-------------------CCccCc-CcCcccCCCCHH-------HHHHHHH
Q 004166 266 PVIPGDTDYRIFSQDYGDIPGLDIIFLI-------------------GGYYYH-TSHDTVDRLLPG-------SVQARGD 318 (770)
Q Consensus 266 ~~ips~tD~~~F~~~~~gIPgld~a~~~-------------------~~~~YH-T~~Dt~d~id~~-------~lq~~g~ 318 (770)
......|||.+|.+ .|||++.+.... +|..+| |.+|+.|++|+. .+....+
T Consensus 255 ~g~~~rSDH~~F~~--~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~~~~~~ 332 (346)
T PRK10199 255 KGTGCCNDAEVFDK--AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVVR 332 (346)
T ss_pred CCCcCCcccHHHHh--cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHHHhHHH
Confidence 11235799999987 899999874322 234789 899999999753 5556778
Q ss_pred HHHHHHHHHhcCc
Q 004166 319 NLFNVLKAFSNSS 331 (770)
Q Consensus 319 ~~l~l~~~la~a~ 331 (770)
.++.++++|+++.
T Consensus 333 ~~~~~~~~~~~~~ 345 (346)
T PRK10199 333 IMLPLVKELAKAS 345 (346)
T ss_pred HHHHHHHHHhccC
Confidence 8999999998863
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=1.6e-28 Score=244.86 Aligned_cols=167 Identities=34% Similarity=0.458 Sum_probs=129.4
Q ss_pred eEEEeecCCCCC------CCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhh-ccccCce
Q 004166 146 SVLMNGHFDGPL------SSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA-HKWRDSV 218 (770)
Q Consensus 146 ~Vll~aH~Dsv~------~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~-~~~~~~i 218 (770)
+|+++|||||++ .++||+||++|||+|||++|.|++.+.+++++|+|+||++||.|+.||++|+++ +.+.+++
T Consensus 2 ~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~~ 81 (179)
T PF04389_consen 2 YIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDNI 81 (179)
T ss_dssp EEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHHE
T ss_pred EEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhcccccc
Confidence 699999999988 789999999999999999999999878889999999999999999999999973 3567999
Q ss_pred eEEEEeccCCCCCCceEEeeCCC-CchhhHhhhhccCccccccccccC--CCCCCCCchHHHhccCCCCcEEEEEEec-C
Q 004166 219 GAVINVEASGTGGLDLVCQSGPS-SWPSSVYAQSAIYPMAHSAAQDVF--PVIPGDTDYRIFSQDYGDIPGLDIIFLI-G 294 (770)
Q Consensus 219 ~a~INlD~~G~gg~~~lfq~gp~-~~~~~~y~~~~~~p~~~~l~~e~f--~~ips~tD~~~F~~~~~gIPgld~a~~~-~ 294 (770)
.++||+|++|.++.....+..+. ++..+.+.+....+.......+.. ...+..|||.+|.. .|||++.+.... .
T Consensus 82 ~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~--~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 82 AAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK--AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT--TT-EEEEEEESSSS
T ss_pred eeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc--CCEeEEEEEecCCC
Confidence 99999999999988888877662 222222222333343333333222 33456899999975 899999998887 5
Q ss_pred CccCcCcCcccCCCCHHHHH
Q 004166 295 GYYYHTSHDTVDRLLPGSVQ 314 (770)
Q Consensus 295 ~~~YHT~~Dt~d~id~~~lq 314 (770)
.+.|||..||++++|+++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 67999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=274.84 Aligned_cols=274 Identities=25% Similarity=0.264 Sum_probs=195.3
Q ss_pred cccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHH---HhcCCCCCCCEEEEEeCcccC
Q 004166 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLT---IDSGWIPPRPIIFLFNGAEEL 200 (770)
Q Consensus 124 ~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l---~~~~~~~~~~I~flf~~~EE~ 200 (770)
....++||+++|+|+. ++|++|++++|+|||. +||.|+++|+|.|+|++|.+ .+.||+|+|+|+|++|+|||.
T Consensus 334 ~~~ki~NIig~I~Gs~--epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 334 EETKIQNIIGKIEGSE--EPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeeEEEEEecCc--CCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 4467899999999963 6899999999999999 89999999999999999997 456899999999999999999
Q ss_pred CccChHHHHhhc--cccCceeEEEEeccCCCCCCceEEeeCCCCchhhHh---hhhccCccccccccccCCCCCCCCchH
Q 004166 201 FMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYR 275 (770)
Q Consensus 201 gl~GS~~fi~~~--~~~~~i~a~INlD~~G~gg~~~lfq~gp~~~~~~~y---~~~~~~p~~~~l~~e~f~~ips~tD~~ 275 (770)
|+.||.+|++++ .+..++.++||+|+++.++..+..+++|. +.+.. .+..+.|.-......+-.. +++|||.
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~~~Pl--L~~li~~~~k~~~~p~~~~~~~~v~~~-g~~Sd~~ 486 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVKTTPL--LTDLIEEAAKSVLSPDKGDQSNRVLSL-GGGSDYA 486 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEecCcc--HHHHHHHHHhccCCCCccccceeEecc-CCCCcch
Confidence 999999999988 34689999999999999877888888874 32222 2334444322221112123 7899999
Q ss_pred HHhccCCCCcEEEEEEecCCccCcCcCcccCCC----CHHHHHH--HHHHHHHHHHHHhcCcCcc-ccchhh--------
Q 004166 276 IFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRL----LPGSVQA--RGDNLFNVLKAFSNSSKLQ-NAHDRA-------- 340 (770)
Q Consensus 276 ~F~~~~~gIPgld~a~~~~~~~YHT~~Dt~d~i----d~~~lq~--~g~~~l~l~~~la~a~~l~-~~~~~~-------- 340 (770)
.|.+ +.|||+++++|...-+.|||.+||++.+ |+..-++ ++.++...+-.+++.+.+| |..++.
T Consensus 487 ~F~~-~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd~~~Y~~~l~~~~~ 565 (702)
T KOG2195|consen 487 SFLQ-FAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFDISDYADVLLKTLP 565 (702)
T ss_pred hhcc-ccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCcHHHHHHHHHHHHH
Confidence 9985 8999999999998777999999995554 6654444 3444444555555644455 443321
Q ss_pred hhhhc---cCCCCCCCeeEccchhHhhhhccHHHHHHHhhhhHHHhhccceEEEEecccchhhHHhHHH
Q 004166 341 SFEAT---GIKNTDERAIFFDYLTWFMIYYSRSRATVLHGIPIVIFITVPFFLRLLNSGLHSWFATYSD 406 (770)
Q Consensus 341 ~~~~~---~~~~~~~~~V~fd~lg~~~v~y~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (770)
.+++. ...........|+....++..++.. ...+...........+..++..|+++|..||+|++
T Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~N~~l~~~er~f~~ 633 (702)
T KOG2195|consen 566 KLEELSPDKVNFLLTIQGLFSWRLDALKAAEWE-SSELSSRFSHGDKIEPSKLRPNNDRLMLIERTFLD 633 (702)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccccccccccccHHHHHhHHhhcC
Confidence 11111 1112223344555566666666663 33344444444455566677779999999997755
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-17 Score=169.99 Aligned_cols=247 Identities=17% Similarity=0.210 Sum_probs=175.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccce
Q 004166 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~N 130 (770)
-+-.|.++.|..+- -+|++||+++.++++||.+.+++++ +.+|.+....++. ..+.+..|
T Consensus 48 s~~~~~~~~L~p~l---v~Rvpgs~g~~~vr~~i~~~l~~l~------w~ve~~~f~~~tp-----------~g~~~f~n 107 (338)
T KOG3946|consen 48 SDWNRLWENLLPIL---VPRVPGSPGSRQVRRFIIQHLRNLG------WAVETDAFTDNTP-----------LGTRNFNN 107 (338)
T ss_pred CCHHHHHHhhhhhh---ccccCCCCccHHHHHHHHHHHHhcC------ceeeeccccccCc-----------ceeeeeee
Confidence 34566777766554 4999999999999999999999996 7888876655431 24567889
Q ss_pred EEEEEeCCCCCCCCCeEEEeecCCCCCC----CCCCCCChhHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCccc---
Q 004166 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS----SPGAGDCGSCVASMLELARLTIDS----GWIPPRPIIFLFNGAEE--- 199 (770)
Q Consensus 131 Vi~~i~g~~~~~~~~~Vll~aH~Dsv~~----s~GA~D~~sgva~~LE~ar~l~~~----~~~~~~~I~flf~~~EE--- 199 (770)
+|+++..+ .+++.++.|||||.-. --||.|.+..||.||++++.+.+. ...++-++.++|++|||
T Consensus 108 ii~tl~~~----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~ 183 (338)
T KOG3946|consen 108 LIATLDPN----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFE 183 (338)
T ss_pred EEEecCCC----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHh
Confidence 99999865 3578999999999743 258999999999999999999653 22456789999999999
Q ss_pred -----CCccChHHHHhhc------c-----ccCceeEEEEeccCCCCCCceE--EeeCCCCchhhH---hhhhccCcccc
Q 004166 200 -----LFMLGAHGFMKAH------K-----WRDSVGAVINVEASGTGGLDLV--CQSGPSSWPSSV---YAQSAIYPMAH 258 (770)
Q Consensus 200 -----~gl~GS~~fi~~~------~-----~~~~i~a~INlD~~G~gg~~~l--fq~gp~~~~~~~---y~~~~~~p~~~ 258 (770)
..+.||+...++. + ..++++.++-+|-.|+.++++. |.. .+.|..+. -.+........
T Consensus 184 eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~g~l~ 262 (338)
T KOG3946|consen 184 EWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALLGLLA 262 (338)
T ss_pred hcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999998872 2 2356777777888887766541 111 11343221 11110000000
Q ss_pred cccccc--C--CCCC--CCCchHHHhccCCCCcEEEEEEecCCccCcCcCcccCCCCHHHHHHHHHHHHHHH
Q 004166 259 SAAQDV--F--PVIP--GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVL 324 (770)
Q Consensus 259 ~l~~e~--f--~~ip--s~tD~~~F~~~~~gIPgld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~ 324 (770)
+-..+. | +... -+.||.+|.+ .|+|.+.+....-..+|||+.|+..++|..+.++++..+.-++
T Consensus 263 s~r~~~~~Fq~~~~~~~veDDHiPFlr--rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv 332 (338)
T KOG3946|consen 263 SHRLPPRYFQPGGLSSVVEDDHIPFLR--RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFV 332 (338)
T ss_pred hccCCchhccccCccccccCCcchhhh--cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHH
Confidence 111111 2 1111 2789999997 7999999877766779999999999999999998887766555
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.71 E-value=6.7e-17 Score=183.36 Aligned_cols=188 Identities=27% Similarity=0.326 Sum_probs=133.3
Q ss_pred ccceEEEEEeCCC--------CCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 004166 127 NHTNIVMRISSTD--------SQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 198 (770)
Q Consensus 127 ~~~NVi~~i~g~~--------~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~E 198 (770)
...|++++++|+. ....++.+++++|+|+++.++||.||++|+|++||++|.|++. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 4566666666651 1235678999999999999999999999999999999999976 49999999999999
Q ss_pred cCCccChHHHHhhcc--ccCceeEEEEeccCCCCCCceEEeeC--CCCchhhHh---hhhccCccccccccccCCCCCCC
Q 004166 199 ELFMLGAHGFMKAHK--WRDSVGAVINVEASGTGGLDLVCQSG--PSSWPSSVY---AQSAIYPMAHSAAQDVFPVIPGD 271 (770)
Q Consensus 199 E~gl~GS~~fi~~~~--~~~~i~a~INlD~~G~gg~~~lfq~g--p~~~~~~~y---~~~~~~p~~~~l~~e~f~~ips~ 271 (770)
|.|+.||+.|+.++. ..+++..+||+|+.|..++...++.. +.+...... .+....+...... ......
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 336 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDPSTV----QDFDPR 336 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhcccccc----CCCCCC
Confidence 999999999999775 35788889999999987633222222 111111110 0111111110000 223467
Q ss_pred CchHHHhccCCCCcEEEEEEecCC-----ccCcCcCcccCCCCHHHHHHHHHHHHHHH
Q 004166 272 TDYRIFSQDYGDIPGLDIIFLIGG-----YYYHTSHDTVDRLLPGSVQARGDNLFNVL 324 (770)
Q Consensus 272 tD~~~F~~~~~gIPgld~a~~~~~-----~~YHT~~Dt~d~id~~~lq~~g~~~l~l~ 324 (770)
+||.+|.+ +|+|++.+...... .++||..|| ++ |...++..+..+.+..
T Consensus 337 sd~~~f~~--~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~ 390 (435)
T COG2234 337 SDHYPFTE--AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATL 390 (435)
T ss_pred Ccchhhhh--cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhh
Confidence 99999986 89999887655443 389999999 88 8777777775544443
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.48 E-value=2.7e-13 Score=152.86 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccc
Q 004166 54 ARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYR 126 (770)
Q Consensus 54 era~~~l~~L~~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~ 126 (770)
.|.++.+++|+ +||. |...|+++.++++|+.++++++| +++++|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~G------l~v~~D---------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELS-SFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESG------LETRFD---------------------- 53 (406)
T ss_pred HHHHHHHHHHh-ccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CEEEEc----------------------
Confidence 47889999998 5653 55668888999999999999998 455543
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC-----
Q 004166 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF----- 201 (770)
Q Consensus 127 ~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g----- 201 (770)
...|++++++|+++ +.|.|++++|+||||. .|..|+..||++.||++|.|++.+.+|+|+|.+++|.+||.+
T Consensus 54 ~~gN~~~~~~g~~~--~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~ 130 (406)
T TIGR03176 54 DVGNLYGRLVGTEF--PEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYV 130 (406)
T ss_pred CCCcEEEEecCCCC--CCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcc
Confidence 34699999999753 4578999999999996 478899999999999999999998999999999999999976
Q ss_pred ccChHHHHhhc
Q 004166 202 MLGAHGFMKAH 212 (770)
Q Consensus 202 l~GS~~fi~~~ 212 (770)
+.||+.+..+.
T Consensus 131 ~~Gs~~~~g~~ 141 (406)
T TIGR03176 131 FWGSKNIFGLA 141 (406)
T ss_pred cccHHHHhCCC
Confidence 99999998533
No 8
>PRK09133 hypothetical protein; Provisional
Probab=99.42 E-value=3.9e-12 Score=146.20 Aligned_cols=151 Identities=23% Similarity=0.234 Sum_probs=116.8
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccccc
Q 004166 49 DRFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (770)
Q Consensus 49 ~~Fs~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~ 128 (770)
+++..+++.+.+++|. +|.+ +.+..+++++.+||.++++++|.+. ..++++. . ..+.
T Consensus 32 ~~~~~~~~~~~l~~Lv-~i~S-~s~~~~e~~~~~~l~~~l~~~G~~~---~~~~~~~--~----------------~~~~ 88 (472)
T PRK09133 32 PTADQQAARDLYKELI-EINT-TASTGSTTPAAEAMAARLKAAGFAD---ADIEVTG--P----------------YPRK 88 (472)
T ss_pred cchhHHHHHHHHHHHh-ccCC-CCCCcchHHHHHHHHHHHHHcCCCc---eEEEecc--C----------------CCCc
Confidence 4678889999999998 5544 2223445589999999999998421 1122211 0 1124
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 004166 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (770)
Q Consensus 129 ~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~ 188 (770)
.|++++++|+++ .+.|++++|+|+||. ++|+.|+++|+|++|++++.|++.+..+++
T Consensus 89 ~nli~~~~g~~~---~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~ 165 (472)
T PRK09133 89 GNLVARLRGTDP---KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKR 165 (472)
T ss_pred eeEEEEecCCCC---CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCC
Confidence 699999987642 357999999999973 689999999999999999999988878899
Q ss_pred CEEEEEeCccc-CCccChHHHHhhccccCceeEEEEecc
Q 004166 189 PIIFLFNGAEE-LFMLGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 189 ~I~flf~~~EE-~gl~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
+|.|++..+|| .|..|++.++++++..-+..++|+ |.
T Consensus 166 ~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 166 DIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 99999999999 899999999987653335678888 85
No 9
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.41 E-value=2.4e-12 Score=145.44 Aligned_cols=129 Identities=24% Similarity=0.252 Sum_probs=107.0
Q ss_pred cccHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccc
Q 004166 50 RFSEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSIS 122 (770)
Q Consensus 50 ~Fs~era~~~l~~L~~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~ 122 (770)
.++.+|.++.++.|+ .||. |...|+++.++++||.+++++.| ++++.+.
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G------~~v~~~~----------------- 61 (414)
T PRK12891 6 RVDGERLWASLERMA-QIGATPKGGVCRLALTDGDREARDLFVAWARDAG------CTVRVDA----------------- 61 (414)
T ss_pred ccCHHHHHHHHHHHH-hccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEECC-----------------
Confidence 346679999999999 5752 66778888899999999999998 4555431
Q ss_pred ccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC-
Q 004166 123 LGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF- 201 (770)
Q Consensus 123 ~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g- 201 (770)
..|++++++|+++ ..+.|++++|+|+||. .|..|+++|++++|++++.|++.+.+++++|.|+++.+||.+
T Consensus 62 -----~gNl~a~~~g~~~--~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~ 133 (414)
T PRK12891 62 -----MGNLFARRAGRDP--DAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSR 133 (414)
T ss_pred -----CCCEEEEecCCCC--CCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCc
Confidence 2499999988542 3478999999999996 366899999999999999999998899999999999999975
Q ss_pred ----ccChHHHHh
Q 004166 202 ----MLGAHGFMK 210 (770)
Q Consensus 202 ----l~GS~~fi~ 210 (770)
+.||+.+..
T Consensus 134 f~~~~~Gs~~~~g 146 (414)
T PRK12891 134 FAPSMVGSGVFFG 146 (414)
T ss_pred CCcccccHHHHhC
Confidence 579987743
No 10
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.40 E-value=3.4e-12 Score=144.13 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=106.4
Q ss_pred cHHHHHHHHHHHHHhcC------CCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccc
Q 004166 52 SEARAIQHVRVLADEIG------DRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (770)
Q Consensus 52 s~era~~~l~~L~~~ig------~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y 125 (770)
+.+++++++.+|+ +|+ .|+..|+++.++++||.++|++.| ++++.+
T Consensus 7 ~~~~~~~~~~~~~-~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~--------------------- 58 (414)
T PRK12890 7 NGERLLARLEELA-AIGRDGPGWTRLALSDEERAARALLAAWMRAAG------LEVRRD--------------------- 58 (414)
T ss_pred CHHHHHHHHHHHh-ccCCCCCceeeccCCHHHHHHHHHHHHHHHHCC------CEEEEc---------------------
Confidence 4689999999999 565 456778888899999999999998 445442
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----
Q 004166 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL----- 200 (770)
Q Consensus 126 ~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~----- 200 (770)
...|++++++|+++ +.+.|++++|+|+||. .|+.|+++|+|++|++++.|++.+.+++++|.|+++.+||.
T Consensus 59 -~~~nlia~~~g~~~--~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~ 134 (414)
T PRK12890 59 -AAGNLFGRLPGRDP--DLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGP 134 (414)
T ss_pred -CCCcEEEEeCCCCC--CCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCC
Confidence 12499999987532 3467999999999995 46789999999999999999988888899999999999997
Q ss_pred CccChHHHHhh
Q 004166 201 FMLGAHGFMKA 211 (770)
Q Consensus 201 gl~GS~~fi~~ 211 (770)
++.||+.+...
T Consensus 135 ~~~G~~~~~~~ 145 (414)
T PRK12890 135 SMIGSRALAGT 145 (414)
T ss_pred ccccHHHHHcc
Confidence 67899888763
No 11
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.37 E-value=9.8e-12 Score=140.84 Aligned_cols=145 Identities=22% Similarity=0.240 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+++.+.+++|. +|.+ +.+. .+++++++||.++|+++| ++++.++.. ....||+
T Consensus 13 ~~~~~~l~~Lv-~i~S-~s~~~~~e~~~a~~l~~~l~~~G------~~~~~~~~~------------------~~~~nvi 66 (421)
T PRK08596 13 DELLELLKTLV-RFET-PAPPARNTNEAQEFIAEFLRKLG------FSVDKWDVY------------------PNDPNVV 66 (421)
T ss_pred HHHHHHHHHHh-cCCC-CCCCchhHHHHHHHHHHHHHHCC------CeEEEEEcc------------------CCCceEE
Confidence 56778888887 4443 2222 244578999999999998 445443211 1236999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~ 191 (770)
++++|+++ ...+.|++++|+|+||. ++|+.|+++|++++|++++.+++.+.+++.+|.
T Consensus 67 a~~~g~~~-~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~ 145 (421)
T PRK08596 67 GVKKGTES-DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLI 145 (421)
T ss_pred EEecCCCC-CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 99988532 22357999999999863 589999999999999999999988878889999
Q ss_pred EEEeCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 192 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 192 flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|+|.++||.|..|++.++++.. +.+.+|+.|..+
T Consensus 146 ~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~~ 179 (421)
T PRK08596 146 FQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTSD 179 (421)
T ss_pred EEEEeccccCCcCHHHHHhcCC---CCCEEEECCCCC
Confidence 9999999999999999988642 357788888643
No 12
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.37 E-value=4.9e-12 Score=142.41 Aligned_cols=126 Identities=23% Similarity=0.249 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccc
Q 004166 55 RAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRN 127 (770)
Q Consensus 55 ra~~~l~~L~~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~ 127 (770)
|.++.+..++ .+|. |...|+++.++++||.+++++.| ++++++.
T Consensus 2 ~~~~~~~~~~-~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G------~~~~~~~---------------------- 52 (401)
T TIGR01879 2 RLWETLMWLG-EVGADPAGGMTRLALSPEDREAQDLFKKRMRAAG------LEVRFDE---------------------- 52 (401)
T ss_pred hHHHHHHHHh-cccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCC------CEEEEec----------------------
Confidence 6788888888 6653 44447777899999999999998 4555431
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC-----Cc
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL-----FM 202 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~-----gl 202 (770)
..||+++++|+++ +.+.|++++|+|+||. .|..|+..|++++|++++.|++.+.+++++|.|+++.+||. ++
T Consensus 53 ~~nl~a~~~g~~~--~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~ 129 (401)
T TIGR01879 53 VGNLIGRKEGTEP--PLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGM 129 (401)
T ss_pred CCcEEEEecCCCC--CCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccccc
Confidence 2599999988642 2478999999999996 37789999999999999999999989999999999999997 88
Q ss_pred cChHHHHhhc
Q 004166 203 LGAHGFMKAH 212 (770)
Q Consensus 203 ~GS~~fi~~~ 212 (770)
.||+.+..+.
T Consensus 130 ~Gs~~~~~~~ 139 (401)
T TIGR01879 130 WGSRNMVGLA 139 (401)
T ss_pred ccHHHHhccc
Confidence 9999998654
No 13
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.37 E-value=4.4e-12 Score=149.33 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=106.2
Q ss_pred cHHHHHHHHHHHHHhcCC----------CCCCChhHHHHHHHHHHHHHhcccccCCce-eEEEEEeeecCcccceecccc
Q 004166 52 SEARAIQHVRVLADEIGD----------RQEGRPGLREAAVYIKTQLEGIKERAGPKF-RIEIEENVVNGSFNMIFLGHS 120 (770)
Q Consensus 52 s~era~~~l~~L~~~ig~----------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~-~vev~~~~~~g~~~~~~~~~~ 120 (770)
-.+|.++.+++|+ .|+. |...|++..++++|+.++++++| + ++++|
T Consensus 179 ~~~r~~~~~~~l~-~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~G------l~~v~~D---------------- 235 (591)
T PRK13590 179 LGNDVWDWAERLA-AHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCG------FDEVHID---------------- 235 (591)
T ss_pred HHHHHHHHHHHHh-cccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcC------CCeeeEC----------------
Confidence 4678999999999 5543 33448888899999999999998 4 44442
Q ss_pred ccccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 004166 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (770)
Q Consensus 121 ~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~ 200 (770)
...|++++++|+++ +.+.|++++|+|||++ .|..|+..||+++||++|.|++.+.+++++|.|++|.+||.
T Consensus 236 ------~~GNl~~~~~g~~~--~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg 306 (591)
T PRK13590 236 ------AVGNVVGRYKGSTP--QAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEG 306 (591)
T ss_pred ------CCCCEEEEecCCCC--CCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCcc
Confidence 24699999998653 3367999999999996 46789999999999999999999988899999999999997
Q ss_pred -----CccChHHHHh
Q 004166 201 -----FMLGAHGFMK 210 (770)
Q Consensus 201 -----gl~GS~~fi~ 210 (770)
++.||+.+..
T Consensus 307 ~rF~~~~~GS~~~~G 321 (591)
T PRK13590 307 QRYKATFLGSGALIG 321 (591)
T ss_pred ccCCccccchHHHhC
Confidence 5999998764
No 14
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.36 E-value=4.4e-12 Score=149.32 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=110.4
Q ss_pred cHHHHHHHHHHHHHhcC----------CCCCCChhHHHHHHHHHHHHHhcccccCCcee-EEEEEeeecCcccceecccc
Q 004166 52 SEARAIQHVRVLADEIG----------DRQEGRPGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHS 120 (770)
Q Consensus 52 s~era~~~l~~L~~~ig----------~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~ 120 (770)
..+|.++.+++|+ .|| .|...|+++.++++|+.+++++.| ++ +++|
T Consensus 179 ~~~r~~~~l~~l~-~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~G------l~~v~~D---------------- 235 (591)
T PRK13799 179 IGADVMDWAEDIA-AHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAG------FDEVEID---------------- 235 (591)
T ss_pred HHHHHHHHHHHHH-hccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcC------CCeEeEC----------------
Confidence 6789999999999 676 155668888899999999999999 44 5553
Q ss_pred ccccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 004166 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (770)
Q Consensus 121 ~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~ 200 (770)
...||+++++|+++ +.|.|++++|+|||+. .|.-|+..||+++||++|.|++.+.+++++|.++.|.+||.
T Consensus 236 ------~~gNv~~~~~g~~~--~~p~v~~gSHlDTV~~-gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg 306 (591)
T PRK13799 236 ------AVGNVVGRYKAADD--DAKTLITGSHYDTVRN-GGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEG 306 (591)
T ss_pred ------CCCCEEEEcCCCCC--CCCeEEEeccccccCC-CCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCc
Confidence 34699999998753 3578999999999996 67889999999999999999999999999999999999997
Q ss_pred -----CccChHHHHh
Q 004166 201 -----FMLGAHGFMK 210 (770)
Q Consensus 201 -----gl~GS~~fi~ 210 (770)
++.||+.+..
T Consensus 307 ~rF~~~~~GS~~~~G 321 (591)
T PRK13799 307 QRFKATFLGSGALIG 321 (591)
T ss_pred cCCCccccchHHHhC
Confidence 8999999974
No 15
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.36 E-value=1.9e-11 Score=137.98 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+++.+.+++|. +|.+ ..+. ++++++.+||.++|+++| ++++.+.... ....|++
T Consensus 37 ~~~~~~l~~lv-~i~S-~s~~~~~~~~~~~~l~~~L~~~G------~~v~~~~~~~-----------------~~~~~li 91 (410)
T PRK06133 37 PAYLDTLKELV-SIES-GSGDAEGLKQVAALLAERLKALG------AKVERAPTPP-----------------SAGDMVV 91 (410)
T ss_pred HHHHHHHHHHH-cCCC-CCCCHHHHHHHHHHHHHHHHhCC------CeEEEEccCC-----------------CCCCeEE
Confidence 45667777777 4433 2332 234489999999999998 4444432100 1135999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEe
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFN 195 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~-----------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~ 195 (770)
++++|++ .+.|++.+|+|+||. ++|+.|+++|++++|++++.|++.+.+++.+|.|+|.
T Consensus 92 a~~~g~~----~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~ 167 (410)
T PRK06133 92 ATFKGTG----KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFN 167 (410)
T ss_pred EEECCCC----CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 9997742 357999999999973 5799999999999999999999887777889999999
Q ss_pred CcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 196 GAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 196 ~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
.+||.|..|++.++++.. .+.+++|+.|...
T Consensus 168 ~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~~ 198 (410)
T PRK06133 168 PDEETGSPGSRELIAELA--AQHDVVFSCEPGR 198 (410)
T ss_pred CCcccCCccHHHHHHHHh--ccCCEEEEeCCCC
Confidence 999999899999998653 3567888888543
No 16
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.36 E-value=9.5e-12 Score=140.54 Aligned_cols=130 Identities=27% Similarity=0.293 Sum_probs=106.8
Q ss_pred ccHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccc
Q 004166 51 FSEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISL 123 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~ 123 (770)
.+++|+++++++|+ ++|+ |++.|.++.++++||.++|+++| ++++++
T Consensus 4 ~~~~~~~~~~~~l~-~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g------~~~~~~------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELA-KIGATPDGGVTRLALSPEDLQARDLFAEWMEAAG------LTVRVD------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHh-cccCCCCCceeeccCCHHHHHHHHHHHHHHHHcC------CEEEEc-------------------
Confidence 35789999999999 6765 55677777799999999999988 444432
Q ss_pred cccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC---
Q 004166 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL--- 200 (770)
Q Consensus 124 ~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~--- 200 (770)
...|++++++|.++ +.+.|++++|+|+||. .|..|++.|+|+|+++++.|++.+.+++++|.|+++.+||.
T Consensus 58 ---~~~nl~a~~~g~~~--~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~ 131 (413)
T PRK09290 58 ---AVGNLFGRLEGRDP--DAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRF 131 (413)
T ss_pred ---CCCcEEEEecCCCC--CCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccc
Confidence 12499999977431 2467999999999995 46779999999999999999988888889999999999998
Q ss_pred --CccChHHHHhhc
Q 004166 201 --FMLGAHGFMKAH 212 (770)
Q Consensus 201 --gl~GS~~fi~~~ 212 (770)
|+.|++.+++++
T Consensus 132 g~~~~G~~~~~~~~ 145 (413)
T PRK09290 132 GPAMLGSRVFTGAL 145 (413)
T ss_pred cCccccHHHHHccc
Confidence 578999888654
No 17
>PRK07473 carboxypeptidase; Provisional
Probab=99.35 E-value=2e-11 Score=136.32 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=113.8
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccc
Q 004166 51 FSEARAIQHVRVLADEIGDRQEGRPG-LREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~R~~gS~~-~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~ 129 (770)
++.+++.+.+++|. +|.+. .+.++ ..+..+|+.++|+++| ++++++.... | ...
T Consensus 8 ~~~~~~~~~l~~Lv-~i~S~-s~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~~~-~----------------~~~ 62 (376)
T PRK07473 8 FDSEAMLAGLRPWV-ECESP-TWDAAAVNRMLDLAARDMAIMG------ATIERIPGRQ-G----------------FGD 62 (376)
T ss_pred cCHHHHHHHHHHHh-cCCCC-CCCHHHHHHHHHHHHHHHHHcC------CeEEEecCCC-C----------------CCC
Confidence 45788999999999 66553 33332 2367899999999988 4454432100 0 124
Q ss_pred eEEEEEeCCCCCCCCCeEEEeecCCCCCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 130 NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~-----------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
|++++++|.+ ...+.|++++|+|+|++ ++|+.|+++|+|++|.+++.+++.+.+++.+|.|
T Consensus 63 ~~~~~~~~~~--~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~ 140 (376)
T PRK07473 63 CVRARFPHPR--QGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITV 140 (376)
T ss_pred eEEEEeCCCC--CCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence 8999997532 13467999999999952 7899999999999999999998877666778999
Q ss_pred EEeCcccCCccChHHHHhhccccCceeEEEEeccCCC
Q 004166 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT 229 (770)
Q Consensus 193 lf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~ 229 (770)
+|+.+||.|..|++.+++++.. +.+++|..|..+.
T Consensus 141 ~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~~ 175 (376)
T PRK07473 141 LFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGRP 175 (376)
T ss_pred EEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCCC
Confidence 9999999999999999986532 4578898897653
No 18
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.34 E-value=3.5e-11 Score=130.06 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=132.6
Q ss_pred cccHHHHHHHHHHHHHh---cCCCCCCChhHH-HHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccc
Q 004166 50 RFSEARAIQHVRVLADE---IGDRQEGRPGLR-EAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (770)
Q Consensus 50 ~Fs~era~~~l~~L~~~---ig~R~~gS~~~e-~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y 125 (770)
..+-+..++||..|-+. |..|+.--..+- -...+ ++++++.. ..++|.+|.....|.- .|
T Consensus 56 ~lsl~eL~~Hl~tlp~~PdaIPY~TsYY~~~WGFCl~~--~~~~~L~d---g~Y~V~IdS~l~~G~L-----------~y 119 (386)
T PF09940_consen 56 TLSLEELKKHLHTLPDQPDAIPYRTSYYKRRWGFCLSH--NQLDALPD---GEYEVVIDSTLEDGSL-----------TY 119 (386)
T ss_dssp EEEHHHHGGGEE--TTSTT--B--B-SSS----EE--H--HHHHT--S---SEEEEEEEEEEES-EE-----------EE
T ss_pred EEeHHHHHhhhccCCCCCCccceeeecccCCcccccCH--HHHhhCCC---CceEEEEeeeecCCce-----------eE
Confidence 45677788888777532 444543322111 11111 33444432 3489999988877742 22
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccCh
Q 004166 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGA 205 (770)
Q Consensus 126 ~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS 205 (770)
. -..++|+ .++.|++++|.+|.. -|+||.||++++.+++|.|++. +.+.+.+|+|-. +.+||
T Consensus 120 g-----E~~ipG~----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----eTIGs 181 (386)
T PF09940_consen 120 G-----EFVIPGE----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----ETIGS 181 (386)
T ss_dssp E-----EEEE--S----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----TTHHH
T ss_pred E-----EEEecCC----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----ccHHH
Confidence 2 2456775 346699999999944 5999999999999999999876 455999999996 57999
Q ss_pred HHHHhhccc--cCceeEEEEeccCCCCCCceEEeeCCC-Cchh-hHhhhhccCccccc-cccccCCCCCCCCchHHHhcc
Q 004166 206 HGFMKAHKW--RDSVGAVINVEASGTGGLDLVCQSGPS-SWPS-SVYAQSAIYPMAHS-AAQDVFPVIPGDTDYRIFSQD 280 (770)
Q Consensus 206 ~~fi~~~~~--~~~i~a~INlD~~G~gg~~~lfq~gp~-~~~~-~~y~~~~~~p~~~~-l~~e~f~~ips~tD~~~F~~~ 280 (770)
-.|+.+|.. .+++++-++|.++|..+. .-++.++. .-.+ ++... -..+. -....+.+.|.++|.|+|..-
T Consensus 182 I~yLskn~~~l~~~v~~G~vLtcvGD~~~-~syk~Sr~g~~~iDr~~~~----vl~~~~~~~~~~~F~~~GsDERQfcSP 256 (386)
T PF09940_consen 182 ITYLSKNLDELKKNVKAGLVLTCVGDDGA-YSYKRSRRGNTLIDRAAAH----VLKHSGPNFKIYDFLPRGSDERQFCSP 256 (386)
T ss_dssp HHHHHH-GGGGGG-EEEEEE--S--SSS--EEEE--TTSSSHHHHHHHH----HHHHSSS-EEEE---S-SSTHHHHTST
T ss_pred HHHHHHCHHHHhhheeeeEEEEEecCCCC-cceecCCCCCcHHHHHHHH----HHHhcCCCceEecccccCCCcceeecC
Confidence 999998843 455999999999998764 33443332 2222 22211 11110 001223567889999999751
Q ss_pred CCCCcEEEEEEec-CCc-cCcCcCcccCCCCHHHHHHHHHHHHHHHHHHhcC
Q 004166 281 YGDIPGLDIIFLI-GGY-YYHTSHDTVDRLLPGSVQARGDNLFNVLKAFSNS 330 (770)
Q Consensus 281 ~~gIPgld~a~~~-~~~-~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la~a 330 (770)
--++|...+.-.. +.| -|||..|+++.|+|+.|+..-+.+..+++.+-+.
T Consensus 257 G~dLPv~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 257 GFDLPVGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp TT---EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCceeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 1124433332222 223 8999999999999999999999999999988654
No 19
>PRK08262 hypothetical protein; Provisional
Probab=99.33 E-value=2.2e-11 Score=140.53 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=103.0
Q ss_pred cCcccHHHHHHHHHHHHHhcCCCCCCChhH-------HHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccc
Q 004166 48 LDRFSEARAIQHVRVLADEIGDRQEGRPGL-------REAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHS 120 (770)
Q Consensus 48 ~~~Fs~era~~~l~~L~~~ig~R~~gS~~~-------e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~ 120 (770)
+-.++.+++.+.+++|. +|.+ +.+.+++ .+.++||.+++++++ +.++... .+
T Consensus 38 ~~~~~~~~~v~~L~~lv-~i~S-~s~~~~~~~~~~~~~~~~~~L~~~~~~~g------~~~~~~~--~~----------- 96 (486)
T PRK08262 38 PVAVDEDAAAERLSEAI-RFRT-ISNRDRAEDDAAAFDALHAHLEESYPAVH------AALEREV--VG----------- 96 (486)
T ss_pred CCcCCHHHHHHHHHHhc-ccce-eccCCCCcccHHHHHHHHHHHHHhChhhh------ceeEEEE--EC-----------
Confidence 45678899999999998 5554 2332222 257888888888777 2333321 11
Q ss_pred ccccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCC-----------------------CCCCCCChhHHHHHHHHHH
Q 004166 121 ISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-----------------------SPGAGDCGSCVASMLELAR 177 (770)
Q Consensus 121 ~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~-----------------------s~GA~D~~sgva~~LE~ar 177 (770)
..|+++.++|+++ ..+.|++.+|+|+||. ++|+.|+++|++++|.+++
T Consensus 97 -------~~~vv~~~~g~~~--~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~ 167 (486)
T PRK08262 97 -------GHSLLYTWKGSDP--SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAE 167 (486)
T ss_pred -------CccEEEEEECCCC--CCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHH
Confidence 1588888887642 2267999999999974 5699999999999999999
Q ss_pred HHHhcCCCCCCCEEEEEeCcccCCccChHHHHhh
Q 004166 178 LTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKA 211 (770)
Q Consensus 178 ~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~ 211 (770)
.+++.+.+++++|.|+|.++||.|..|++.+++.
T Consensus 168 ~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 168 ALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred HHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 9998877788999999999999998899988864
No 20
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.31 E-value=2.6e-11 Score=136.71 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHHHHHhcCC------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccc
Q 004166 51 FSEARAIQHVRVLADEIGD------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (770)
.+.+|+++.+++|+ +++. |++.|+++.++++||.++|+++| ++++++
T Consensus 7 ~~~~~~~~~~~~~~-~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 59 (412)
T PRK12892 7 IDGQRVLDDLMELA-AIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAG------LAVRID-------------------- 59 (412)
T ss_pred ccHHHHHHHHHHHH-ccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 45779999999999 6764 34556666789999999999998 444442
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC----
Q 004166 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL---- 200 (770)
Q Consensus 125 y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~---- 200 (770)
+..|++++++|+++ .+.|++++|+|+||. .|-.|+..|+|++|++++.|++.+.+++++|.|+++.+||.
T Consensus 60 --~~~nl~a~~~g~~~---~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~ 133 (412)
T PRK12892 60 --GIGNVFGRLPGPGP---GPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFT 133 (412)
T ss_pred --CCCcEEEEecCCCC---CCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccccc
Confidence 12499999988642 367999999999995 35679999999999999999998888999999999999998
Q ss_pred -CccChHHHHhhc
Q 004166 201 -FMLGAHGFMKAH 212 (770)
Q Consensus 201 -gl~GS~~fi~~~ 212 (770)
++.||+.++.++
T Consensus 134 ~~~~Gs~~~~~~~ 146 (412)
T PRK12892 134 PGFLGSRAYAGRL 146 (412)
T ss_pred CccccHHHHHcCC
Confidence 578999998644
No 21
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.31 E-value=2.4e-11 Score=137.04 Aligned_cols=129 Identities=29% Similarity=0.303 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccc
Q 004166 52 SEARAIQHVRVLADEIGD-------RQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (770)
Q Consensus 52 s~era~~~l~~L~~~ig~-------R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (770)
+.+++.+++++|. +|.. |..+|.++.++.+||.++|+++| ++++++
T Consensus 8 ~~~~~~~~l~~l~-~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G------~~~~~~-------------------- 60 (412)
T PRK12893 8 NGERLWDSLMALA-RIGATPGGGVTRLALTDEDREARDLLAQWMEEAG------LTVSVD-------------------- 60 (412)
T ss_pred CHHHHHHHHHHHh-cccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcC------CEEEEc--------------------
Confidence 5688999999999 5663 34457777799999999999998 444442
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC---
Q 004166 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF--- 201 (770)
Q Consensus 125 y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g--- 201 (770)
...|++++++|+++ +.+.|++++|+|+||. .|..|++.|+|++|++++.|++.+.+++++|+|+|+.+||.|
T Consensus 61 --~~~n~~a~~~g~~~--~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~ 135 (412)
T PRK12893 61 --AIGNLFGRRAGTDP--DAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFA 135 (412)
T ss_pred --CCCcEEEEeCCCCC--CCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccc
Confidence 12499999987532 3478999999999995 466899999999999999999888888999999999999986
Q ss_pred --ccChHHHHhhc
Q 004166 202 --MLGAHGFMKAH 212 (770)
Q Consensus 202 --l~GS~~fi~~~ 212 (770)
+.|+..+..++
T Consensus 136 ~~~~G~~~~~~~~ 148 (412)
T PRK12893 136 PAMLGSGVFTGAL 148 (412)
T ss_pred cccccHHHHhCcC
Confidence 88999888654
No 22
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.28 E-value=4.8e-11 Score=132.95 Aligned_cols=141 Identities=24% Similarity=0.286 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
++++.+.+++|. ++.. -|.++.++++||.++|+++| ++++.+.. . ....|++
T Consensus 1 ~~~~~~~l~~Lv-~i~s---~s~~e~~~~~~l~~~l~~~G------~~~~~~~~--~----------------~~~~~l~ 52 (377)
T PRK08588 1 EEEKIQILADIV-KINS---VNDNEIEVANYLQDLFAKHG------IESKIVKV--N----------------DGRANLV 52 (377)
T ss_pred ChHHHHHHHHHh-cCCC---CCCcHHHHHHHHHHHHHHCC------CceEEEec--C----------------CCCceEE
Confidence 367888899998 4433 33455689999999999998 44444321 1 1236999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~ 191 (770)
+++ |.+ ++.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+..++.+|.
T Consensus 53 a~~-g~~----~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 127 (377)
T PRK08588 53 AEI-GSG----SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIR 127 (377)
T ss_pred EEe-CCC----CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEE
Confidence 998 432 267999999999984 578999999999999999999988878889999
Q ss_pred EEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 192 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 192 flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
|+|..+||.|..|+..++++ .+.+++++++..|..
T Consensus 128 l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep~ 162 (377)
T PRK08588 128 LLATAGEEVGELGAKQLTEK-GYADDLDALIIGEPS 162 (377)
T ss_pred EEEEcccccCchhHHHHHhc-CccCCCCEEEEecCC
Confidence 99999999999999999975 344566777777753
No 23
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.28 E-value=5e-11 Score=132.79 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=106.5
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeC
Q 004166 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (770)
Q Consensus 58 ~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g 137 (770)
+.+++|. ++..-...+.++.++++||.++|+++| ++++...... +. .....|+++.++|
T Consensus 2 ~~l~~lv-~i~s~~~~~~~e~~~a~~l~~~l~~~G------~~~~~~~~~~-~~-------------~~~~~~~~~~~~g 60 (375)
T TIGR01910 2 ELLKDLI-SIPSVNPPGGNEETIANYIKDLLREFG------FSTDVIEITD-DR-------------LKVLGKVVVKEPG 60 (375)
T ss_pred hhHHhhh-cCCCCCCCCcCHHHHHHHHHHHHHHCC------CceEEEecCc-hh-------------cccccceEEeccC
Confidence 3566776 444322235566699999999999998 3444332111 10 0112367888777
Q ss_pred CCCCCCCCeEEEeecCCCCCCC---------------------CCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 004166 138 TDSQDTDPSVLMNGHFDGPLSS---------------------PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (770)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~s---------------------~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~ 196 (770)
++ ..+.|++.+|+|+||.+ +|+.|+++|+|++|++++.|++.+.+++++|.|+|+.
T Consensus 61 ~~---~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 137 (375)
T TIGR01910 61 NG---NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVV 137 (375)
T ss_pred CC---CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEc
Confidence 43 24679999999999853 6899999999999999999998777788999999999
Q ss_pred cccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 197 AEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 197 ~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
+||.|..|++.++++. ..++.+.+|..|..|
T Consensus 138 ~EE~g~~G~~~~~~~~-~~~~~d~~i~~~~~~ 168 (375)
T TIGR01910 138 DEESGEAGTLYLLQRG-YFKDADGVLIPEPSG 168 (375)
T ss_pred CcccCchhHHHHHHcC-CCCCCCEEEECCCCC
Confidence 9999999999999753 334467777777543
No 24
>PRK07338 hypothetical protein; Provisional
Probab=99.28 E-value=6.7e-11 Score=132.98 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceE
Q 004166 53 EARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NV 131 (770)
.+++.+.|++|. ++.+ ..+. ++.+++++||.++|+++| +++++... .+.-..+.-+ .........|+
T Consensus 16 ~~~~~~~l~~lv-~i~S-~s~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~--~~~~~~~~~~--~~~~~~~~~nl 83 (402)
T PRK07338 16 QAPMLEQLIAWA-AINS-GSRNLDGLARMAELLADAFAALP------GEIELIPL--PPVEVIDADG--RTLEQAHGPAL 83 (402)
T ss_pred HHHHHHHHHHHH-hccC-CCCCHHHHHHHHHHHHHHHHhCC------CcEEEecC--Cccccccccc--cccccCcCCeE
Confidence 356677777777 4433 1222 234578999999999999 34444321 1100000000 00011233699
Q ss_pred EEEEeCCCCCCCCCeEEEeecCCCCCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Q 004166 132 VMRISSTDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLF 194 (770)
Q Consensus 132 i~~i~g~~~~~~~~~Vll~aH~Dsv~~-----------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf 194 (770)
+++++|+. ++.|++++|+|+||. ++|+.|+++|++++|++++.|++.+.+++.++.|+|
T Consensus 84 ~a~~~~~~----~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 84 HVSVRPEA----PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEECCCC----CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 99996532 235999999999973 579999999999999999999887767788999999
Q ss_pred eCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 195 NGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 195 ~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
..+||.|..|++.+++++. .+.++.+.+|..+
T Consensus 160 ~~dEE~g~~g~~~~~~~~~--~~~~~~i~~ep~~ 191 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA--RGKHAALTYEPAL 191 (402)
T ss_pred ECCcccCChhhHHHHHHHh--ccCcEEEEecCCC
Confidence 9999999999999998764 3456778888643
No 25
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.27 E-value=9.4e-11 Score=132.78 Aligned_cols=154 Identities=18% Similarity=0.107 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+++.+.+++|. ++.+- .+. .+++++++||.++|+++| ++++++. ..+. +....+....|++
T Consensus 14 ~~~~~~l~~Lv-~i~S~-~~~g~~e~~~~~~l~~~l~~~G------~~~~~~~--~~~~--------~~~~~~~~~~nli 75 (427)
T PRK13013 14 DDLVALTQDLI-RIPTL-NPPGRAYREICEFLAARLAPRG------FEVELIR--AEGA--------PGDSETYPRWNLV 75 (427)
T ss_pred HHHHHHHHHHh-cCCCc-CCCCccHHHHHHHHHHHHHHCC------CceEEEe--cCCC--------CcccccCCcceEE
Confidence 46777888887 55332 111 233589999999999998 4444432 1110 0001122347999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~fl 193 (770)
++++|++ +++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+|+|+
T Consensus 76 a~~~g~~---~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~ 152 (427)
T PRK13013 76 ARRQGAR---DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEIS 152 (427)
T ss_pred EEecCCC---CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEE
Confidence 9998753 2467999999999973 57999999999999999999998877788999999
Q ss_pred EeCcccCCccChHHHHhhccccC--ceeEEEEeccCC
Q 004166 194 FNGAEELFMLGAHGFMKAHKWRD--SVGAVINVEASG 228 (770)
Q Consensus 194 f~~~EE~gl~GS~~fi~~~~~~~--~i~a~INlD~~G 228 (770)
|..+||.|..|...++.+....+ ++.++|..|..+
T Consensus 153 ~~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~ep~~ 189 (427)
T PRK13013 153 GTADEESGGFGGVAYLAEQGRFSPDRVQHVIIPEPLN 189 (427)
T ss_pred EEeccccCChhHHHHHHhcCCccccCCCEEEEecCCC
Confidence 99999988765554444343322 567788777543
No 26
>PRK07906 hypothetical protein; Provisional
Probab=99.27 E-value=4.9e-11 Score=135.23 Aligned_cols=130 Identities=30% Similarity=0.457 Sum_probs=100.3
Q ss_pred HHHHHHHHHhcCCCCCC---ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEE
Q 004166 57 IQHVRVLADEIGDRQEG---RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (770)
Q Consensus 57 ~~~l~~L~~~ig~R~~g---S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~ 133 (770)
.+.+++|. +|.+...+ +++++++++||.++++++| ++++.++. . .+..|+++
T Consensus 2 ~~ll~~Lv-~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G------~~~~~~~~--~----------------~~~~nv~~ 56 (426)
T PRK07906 2 VDLCSELI-RIDTTNTGDGTGKGEREAAEYVAEKLAEVG------LEPTYLES--A----------------PGRANVVA 56 (426)
T ss_pred hHHHHHHh-cccccCCCCCCCchHHHHHHHHHHHHHhCC------CCeEEeec--C----------------CCceEEEE
Confidence 45678887 55442211 2456689999999999998 44444321 0 12369999
Q ss_pred EEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 004166 134 RISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (770)
Q Consensus 134 ~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~fl 193 (770)
+++|+++ ..+.|++++|+|+||. ++|+.|+++|++++|++++.+++.+.+++++|.|+
T Consensus 57 ~~~g~~~--~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~ 134 (426)
T PRK07906 57 RLPGADP--SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFA 134 (426)
T ss_pred EEeCCCC--CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEE
Confidence 9987532 3367999999999974 57999999999999999999998888889999999
Q ss_pred EeCcccCC-ccChHHHHhhcc
Q 004166 194 FNGAEELF-MLGAHGFMKAHK 213 (770)
Q Consensus 194 f~~~EE~g-l~GS~~fi~~~~ 213 (770)
|+.+||.| ..|++.++++++
T Consensus 135 ~~~dEE~g~~~g~~~l~~~~~ 155 (426)
T PRK07906 135 FVADEEAGGTYGAHWLVDNHP 155 (426)
T ss_pred EecCcccchhhhHHHHHHHHH
Confidence 99999986 469999987653
No 27
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.23 E-value=1.7e-10 Score=129.67 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=110.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccc
Q 004166 50 RFSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (770)
Q Consensus 50 ~Fs~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~ 129 (770)
.+-.+++.+.|++|. +|.+. .++.+++++++||.++++++| ++++..+. .. ...
T Consensus 5 ~~~~~~~~~~l~~lv-~ipS~-~~~~~~~~~~~~l~~~l~~~G------~~~~~~~~-~~-----------------g~~ 58 (400)
T TIGR01880 5 KWEEDIAVTRFREYL-RINTV-QPNPDYAACVDFLIKQADELG------LARKTIEF-VP-----------------GKP 58 (400)
T ss_pred ccchHHHHHHHHHHh-ccCcc-CCCccHHHHHHHHHHHHHhCC------CceeEEEe-cC-----------------Cce
Confidence 456788999999999 55553 233334589999999999998 33332111 00 135
Q ss_pred eEEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 004166 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (770)
Q Consensus 130 NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~ 188 (770)
|++++++|+++ ..+.|++++|+|+||. ++|+.|+++|+|++|++++.+++.+.++++
T Consensus 59 ~l~~~~~g~~~--~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~ 136 (400)
T TIGR01880 59 VVVLTWPGSNP--ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKR 136 (400)
T ss_pred eEEEEEecCCC--CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999987542 2367999999999973 578999999999999999999988777889
Q ss_pred CEEEEEeCcccCCc-cChHHHHhhccccCceeEEEEecc
Q 004166 189 PIIFLFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 189 ~I~flf~~~EE~gl-~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
+|.|+|..+||.|. .|++.++++... +.++..+.+|.
T Consensus 137 ~v~l~~~~dEE~g~~~G~~~~~~~~~~-~~~~~~~~~d~ 174 (400)
T TIGR01880 137 TIHISFVPDEEIGGHDGMEKFAKTDEF-KALNLGFALDE 174 (400)
T ss_pred eEEEEEeCCcccCcHhHHHHHHHhhhc-cCCceEEEEcC
Confidence 99999999999875 699988875322 33455555553
No 28
>PRK07907 hypothetical protein; Provisional
Probab=99.22 E-value=2e-10 Score=131.26 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccccc
Q 004166 53 EARAIQHVRVLADEIGDRQEGR----PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS----~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~ 128 (770)
.+++.+.+++|. +|.+- .+. .+++++++||.++++++|.. ++++.+ . .+.
T Consensus 17 ~~~~~~ll~~LV-~ipS~-s~~~~~~~~~~~~~~~l~~~l~~~g~~-----~~~~~~--~-----------------~~~ 70 (449)
T PRK07907 17 LPRVRADLEELV-RIPSV-AADPFRREEVARSAEWVADLLREAGFD-----DVRVVS--A-----------------DGA 70 (449)
T ss_pred HHHHHHHHHHHh-cCCCC-CCCccchhhHHHHHHHHHHHHHHcCCc-----eEEEEe--c-----------------CCC
Confidence 456788888888 55442 221 22347999999999999820 344322 1 123
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCC
Q 004166 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPP 187 (770)
Q Consensus 129 ~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~ 187 (770)
.|++++++|+. +.+.|++++|+|+||. ++|+.|+++|+|++|++++.+ +.+++
T Consensus 71 ~nl~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~ 144 (449)
T PRK07907 71 PAVIGTRPAPP---GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLP 144 (449)
T ss_pred CEEEEEecCCC---CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCC
Confidence 69999998742 2467999999999974 579999999999999999999 33567
Q ss_pred CCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 188 RPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 188 ~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
++|.|+++++||.|..|++.+++++....+.+++|..|..+
T Consensus 145 ~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~~ 185 (449)
T PRK07907 145 VGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSGN 185 (449)
T ss_pred CcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCCc
Confidence 89999999999999999999998764334557788888654
No 29
>PRK06446 hypothetical protein; Provisional
Probab=99.22 E-value=1.6e-10 Score=131.63 Aligned_cols=142 Identities=21% Similarity=0.302 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh-hHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRP-GLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~-~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+++.+.+++|. +|.+- .+.. +.+++++||.+.|+++| +++++++ .. +..|++
T Consensus 2 ~~~~~~l~eLV-~i~S~-s~~~~~~~~~a~~l~~~l~~~G------~~ve~~~--~~-----------------~~~~li 54 (436)
T PRK06446 2 DEELYTLIEFL-KKPSI-SATGEGIEETANYLKDTMEKLG------IKANIER--TK-----------------GHPVVY 54 (436)
T ss_pred hhHHHHHHHHh-CCCCC-CCCcHhHHHHHHHHHHHHHHCC------CeEEEEe--cC-----------------CCCEEE
Confidence 35778888888 55542 2222 22589999999999988 4555432 11 136999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~ 191 (770)
+++++. +.+.|++++|+|+||. ++|+.|+++|+|++|.+++.+++.+ +++.+|.
T Consensus 55 a~~~~~----~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~ 129 (436)
T PRK06446 55 GEINVG----AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVK 129 (436)
T ss_pred EEecCC----CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEE
Confidence 998642 2467999999999873 6899999999999999999887654 5678999
Q ss_pred EEEeCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 192 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 192 flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|+|.++||.|..|++.++++++..-+.+++|. |..+
T Consensus 130 ~~~~~dEE~g~~g~~~~l~~~~~~~~~d~vi~-E~~~ 165 (436)
T PRK06446 130 FLYEGEEEIGSPNLEDFIEKNKNKLKADSVIM-EGAG 165 (436)
T ss_pred EEEEcccccCCHhHHHHHHHHHHHhCCCEEEE-CCCC
Confidence 99999999999999999987642223456664 6443
No 30
>PRK09104 hypothetical protein; Validated
Probab=99.21 E-value=3.4e-10 Score=129.95 Aligned_cols=146 Identities=20% Similarity=0.269 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCh----hHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccccc
Q 004166 53 EARAIQHVRVLADEIGDRQEGRP----GLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~----~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~ 128 (770)
.+++.+.|++|. +|.+ ..+.+ +++++.+||.++++++| +++++.+ .. +.
T Consensus 16 ~~~~~~~L~~lv-~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G------~~v~~~~--~~-----------------~~ 68 (464)
T PRK09104 16 LDASLERLFALL-RIPS-ISTDPAYAADCRKAADWLVADLASLG------FEASVRD--TP-----------------GH 68 (464)
T ss_pred HHHHHHHHHHHh-cCCC-CCCCccchHHHHHHHHHHHHHHHHCC------CeEEEEe--cC-----------------CC
Confidence 467778888887 5444 22222 23478999999999998 4555432 11 12
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeecCCCCCC--------------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 004166 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------------SPGAGDCGSCVASMLELARLTIDS 182 (770)
Q Consensus 129 ~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------------s~GA~D~~sgva~~LE~ar~l~~~ 182 (770)
.||+++++|+++ ..+.|++++|+|+||. ++|+.|++.|+|++|++++.|++.
T Consensus 69 ~~l~a~~~g~~~--~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~ 146 (464)
T PRK09104 69 PMVVAHHEGPTG--DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAV 146 (464)
T ss_pred CEEEEEecCCCC--CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHh
Confidence 599999987532 3468999999999762 358899999999999999999987
Q ss_pred CCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 183 GWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 183 ~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
+.+++.+|.|++.++||.|..|...++.+.....+.+++|..|..
T Consensus 147 ~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~ 191 (464)
T PRK09104 147 TGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDTG 191 (464)
T ss_pred cCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCCC
Confidence 656778999999999999999999999864322356889999954
No 31
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.20 E-value=2.3e-10 Score=126.40 Aligned_cols=134 Identities=22% Similarity=0.147 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceE
Q 004166 52 SEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (770)
Q Consensus 52 s~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NV 131 (770)
.++++.+.+++|. +|.. .|.+++++++|+.++++++| ++++.+ +..|+
T Consensus 4 ~~~~~~~~l~~Lv-~i~s---~s~~e~~~~~~l~~~l~~~G------~~~~~~----------------------~~~n~ 51 (348)
T PRK04443 4 SALEARELLKGLV-EIPS---PSGEEAAAAEFLVEFMESHG------REAWVD----------------------EAGNA 51 (348)
T ss_pred chHHHHHHHHHHH-cCCC---CCCChHHHHHHHHHHHHHcC------CEEEEc----------------------CCCcE
Confidence 3577889999998 5544 34455689999999999998 444432 12489
Q ss_pred EEEEeCCCCCCCCCeEEEeecCCCCCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCccc
Q 004166 132 VMRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEE 199 (770)
Q Consensus 132 i~~i~g~~~~~~~~~Vll~aH~Dsv~~------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE 199 (770)
++++++. ++.|++++|+|+||. ++|+.|+++|+|+++++++.+ + .+++++|.|++..+||
T Consensus 52 i~~~~~~-----~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~dEE 123 (348)
T PRK04443 52 RGPAGDG-----PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVEEE 123 (348)
T ss_pred EEEcCCC-----CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcccc
Confidence 9988431 367999999999973 789999999999999999999 3 3678899999999999
Q ss_pred CCccChHHHHhhccccCceeEEEEeccCC
Q 004166 200 LFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 200 ~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
.|..|...++.+. . +.+++|+.|..+
T Consensus 124 ~g~~~~~~~l~~~-~--~~d~~iv~Ept~ 149 (348)
T PRK04443 124 APSSGGARLVADR-E--RPDAVIIGEPSG 149 (348)
T ss_pred cCChhHHHHHHhc-c--CCCEEEEeCCCC
Confidence 9988887777644 2 467788888544
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.19 E-value=4.8e-10 Score=125.63 Aligned_cols=150 Identities=21% Similarity=0.197 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHhcccccCCcee-EEEEEeeecCcccceeccccccccccccc
Q 004166 54 ARAIQHVRVLADEIGDRQEGR---PGLREAAVYIKTQLEGIKERAGPKFR-IEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS---~~~e~a~~yl~~~l~~ig~~~~~~~~-vev~~~~~~g~~~~~~~~~~~~~~y~~~~ 129 (770)
+++.+.+++|. +|.+- .+. .++.++++||.++|+++|. + ++.... ...+ .......
T Consensus 5 ~~~~~~l~~lv-~i~s~-s~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~~~--~~~~----------~~~~~~~ 64 (400)
T PRK13983 5 DEMIELLSELI-AIPAV-NPDFGGEGEKEKAEYLESLLKEYGF------DEVERYDA--PDPR----------VIEGVRP 64 (400)
T ss_pred HHHHHHHHHHh-CcCCC-CCCCCCccHHHHHHHHHHHHHHcCC------ceEEEEec--CCcc----------cccCCCc
Confidence 46788888888 44442 221 2355899999999999983 3 332210 0000 0001147
Q ss_pred eEEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 004166 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (770)
Q Consensus 130 NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~ 188 (770)
|++++++|.+ +.+.|++++|+|+||. ++|+.|++.|++++|++++.+.+.+.++++
T Consensus 65 nl~~~~~g~~---~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~ 141 (400)
T PRK13983 65 NIVAKIPGGD---GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKY 141 (400)
T ss_pred cEEEEecCCC---CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCC
Confidence 9999998753 2358999999999984 578999999999999999999988778889
Q ss_pred CEEEEEeCcccCCcc-ChHHHHhhccc-cCceeEEEEecc
Q 004166 189 PIIFLFNGAEELFML-GAHGFMKAHKW-RDSVGAVINVEA 226 (770)
Q Consensus 189 ~I~flf~~~EE~gl~-GS~~fi~~~~~-~~~i~a~INlD~ 226 (770)
+|.|+|..+||.|.. |++.++++++. .++..+++..|.
T Consensus 142 ~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~~ 181 (400)
T PRK13983 142 NLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPDA 181 (400)
T ss_pred cEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEecC
Confidence 999999999998875 88888876431 233455665553
No 33
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.18 E-value=3.2e-10 Score=118.17 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=113.2
Q ss_pred CeEEEeecCCCCC----CCCCCCCChhHHHHHHHHHHHHHhc---CCCCCCCEEEEEeCcccCCccChHHHHhhc---cc
Q 004166 145 PSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTIDS---GWIPPRPIIFLFNGAEELFMLGAHGFMKAH---KW 214 (770)
Q Consensus 145 ~~Vll~aH~Dsv~----~s~GA~D~~sgva~~LE~ar~l~~~---~~~~~~~I~flf~~~EE~gl~GS~~fi~~~---~~ 214 (770)
|.|++.|.+||.. .+|||.++.+|++++|++++.|.+. ....+++|.|+|+.||..|.+||+.|+.+. .+
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999974 3899999999999999999999764 235789999999999999999999998653 12
Q ss_pred c-----------CceeEEEEeccCCCCCCceEEee--CCC--Cc---hhhHhhhhccCc-c-cccccc--ccCCCCCCCC
Q 004166 215 R-----------DSVGAVINVEASGTGGLDLVCQS--GPS--SW---PSSVYAQSAIYP-M-AHSAAQ--DVFPVIPGDT 272 (770)
Q Consensus 215 ~-----------~~i~a~INlD~~G~gg~~~lfq~--gp~--~~---~~~~y~~~~~~p-~-~~~l~~--e~f~~ips~t 272 (770)
. ++|+.+|.++.+|..+..-++.. ++. +. ..+...+..+.+ . .....+ +.-..+|..|
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 1 68999999999997665223333 221 11 111211111111 1 111111 1112355545
Q ss_pred chHHHhccCCCCcEEEEEEecCC---ccCcCcCcccCCCCH
Q 004166 273 DYRIFSQDYGDIPGLDIIFLIGG---YYYHTSHDTVDRLLP 310 (770)
Q Consensus 273 D~~~F~~~~~gIPgld~a~~~~~---~~YHT~~Dt~d~id~ 310 (770)
...|.+.-.++||+-++-.+.. .+||+.+|+.++++.
T Consensus 161 -~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 -LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred -HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 6667664358999988765553 379999999998865
No 34
>PRK08201 hypothetical protein; Provisional
Probab=99.18 E-value=3.5e-10 Score=129.47 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCC---hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccce
Q 004166 54 ARAIQHVRVLADEIGDRQEGR---PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS---~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~N 130 (770)
+++.+.+++|. +|.+-..++ .++.++++||.++|+++|.+ .++++. .. +..|
T Consensus 14 ~~~~~~l~~LV-~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~~-----------------~~~~ 68 (456)
T PRK08201 14 EAHLEELKEFL-RIPSISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--TA-----------------GHPI 68 (456)
T ss_pred HHHHHHHHHHh-cCCCCCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--cC-----------------CCCE
Confidence 56677777777 554422111 23347899999999998831 133332 11 1258
Q ss_pred EEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 004166 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (770)
Q Consensus 131 Vi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~ 189 (770)
|++++.|.. +.+.|++++|+|+||. ++|+.|+++|+|++|++++.+.+.+..++++
T Consensus 69 l~a~~~~~~---~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~ 145 (456)
T PRK08201 69 VYADWLHAP---GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVN 145 (456)
T ss_pred EEEEecCCC---CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 999887642 2467999999999873 6899999999999999999998765567789
Q ss_pred EEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 190 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 190 I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|.|++..+||.|..|+..++++++..-+..++|..|..+
T Consensus 146 i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~~ 184 (456)
T PRK08201 146 VKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTTL 184 (456)
T ss_pred EEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCCc
Confidence 999999999999999999998653222346788888654
No 35
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.18 E-value=5e-10 Score=126.79 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~ 133 (770)
+++.+.+++|. ++. +-|.+++++.+||.++|+++| +++++...........+..... ...+....||++
T Consensus 17 ~~~~~~l~~lv-~ip---s~s~~e~~~~~~l~~~l~~~G------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nlia 85 (422)
T PRK06915 17 EEAVKLLKRLI-QEK---SVSGDESGAQAIVIEKLRELG------LDLDIWEPSFKKLKDHPYFVSP-RTSFSDSPNIVA 85 (422)
T ss_pred HHHHHHHHHHH-hCC---CCCcchHHHHHHHHHHHHhcC------CeeEEeecchhhhhcccccCCc-ccccCCCceEEE
Confidence 56778888887 433 235556689999999999998 4444322110000000000000 001123589999
Q ss_pred EEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 134 ~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
+++|++ +.+.|++++|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+|.|
T Consensus 86 ~~~g~~---~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~ 162 (422)
T PRK06915 86 TLKGSG---GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIF 162 (422)
T ss_pred EEcCCC---CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 998753 2467999999999984 5899999999999999999999888778899999
Q ss_pred EEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 193 LFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 193 lf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
++..+||.|..|+...+.+. + +.+++|.-|..
T Consensus 163 ~~~~dEE~g~~G~~~~~~~~-~--~~d~~i~~ep~ 194 (422)
T PRK06915 163 QSVIEEESGGAGTLAAILRG-Y--KADGAIIPEPT 194 (422)
T ss_pred EEecccccCCcchHHHHhcC-c--CCCEEEECCCC
Confidence 99999999888998877642 2 45667766643
No 36
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.17 E-value=2.4e-10 Score=121.39 Aligned_cols=152 Identities=25% Similarity=0.246 Sum_probs=110.3
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCc-----
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFM----- 202 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl----- 202 (770)
..|+|+.=.+. +..++++||.|||. .|+.||-.|++...|+++.|...+ ..+-++.+++||.|+
T Consensus 178 ~y~~Ia~~~~e-----n~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~s 246 (486)
T COG4882 178 DYNVIAVDGGE-----NGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMAS 246 (486)
T ss_pred EEEEEEecCCC-----CCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCcc
Confidence 46777654432 35799999999999 899999999999999999998653 456788899999877
Q ss_pred ----cChHHHHhhccccCceeEEEEeccCCCCCCceEEeeCCCCchhhHhhhhccCcccccc-ccccCCCCCCCCchHHH
Q 004166 203 ----LGAHGFMKAHKWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSA-AQDVFPVIPGDTDYRIF 277 (770)
Q Consensus 203 ----~GS~~fi~~~~~~~~i~a~INlD~~G~gg~~~lfq~gp~~~~~~~y~~~~~~p~~~~l-~~e~f~~ips~tD~~~F 277 (770)
.||++|.++.+-.+++.+.+|+|.+|.+.. +..+-| .+.+.-.+..+ +.. ..+ ..+|-..+
T Consensus 247 fyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~l--v~~~~P--~L~e~~~~~g~----~~vespe------~y~Ds~~y 312 (486)
T COG4882 247 FYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCL--VASGAP--QLVEHALEAGA----VEVESPE------PYCDSIMY 312 (486)
T ss_pred eeecccchHHHhhcCCchhhhheeccccccccch--hhhcCh--HHHHHHHHhCC----ceecCCC------cccchhhh
Confidence 689999998887899999999999987643 222223 33333221111 000 011 23566667
Q ss_pred hccCCCCcEEEEEEecC---CccCcCcCcccC
Q 004166 278 SQDYGDIPGLDIIFLIG---GYYYHTSHDTVD 306 (770)
Q Consensus 278 ~~~~~gIPgld~a~~~~---~~~YHT~~Dt~d 306 (770)
.+ .|||++.+....+ +..|||+.||+.
T Consensus 313 ~~--aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa 342 (486)
T COG4882 313 AW--AGIPSLTIHSLWCPGVQEAYHTPRDTPA 342 (486)
T ss_pred hh--cCCCeeEeeeccCCCccceecCCCCCch
Confidence 65 7999999987664 348999999985
No 37
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.17 E-value=3.2e-10 Score=130.62 Aligned_cols=136 Identities=23% Similarity=0.332 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
.+|+.+.+++|. ++ +++ |.+++++++|+.+++++.| ++++.+. ..|++
T Consensus 3 ~~~~~~~l~~l~-~i-~s~--s~~e~~~~~~l~~~l~~~G------~~~~~~~----------------------~~n~~ 50 (477)
T TIGR01893 3 PSRVFKYFEEIS-KI-PRP--SKNEKEVSNFIVNWAKKLG------LEVKQDE----------------------VGNVL 50 (477)
T ss_pred HHHHHHHHHHHH-cC-CCC--CccHHHHHHHHHHHHHHcC------CeEEEeC----------------------CCeEE
Confidence 478899999999 55 343 5666789999999999998 4454431 25999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC------------------------CCCCC---CChhHHHHHHHHHHHHHhcCCC
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS------------------------SPGAG---DCGSCVASMLELARLTIDSGWI 185 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~------------------------s~GA~---D~~sgva~~LE~ar~l~~~~~~ 185 (770)
++++|+.+.++.+.|++++|+|+|+. ++|+. |++.|++++|++++. . ..
T Consensus 51 ~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~-~~ 126 (477)
T TIGR01893 51 IRKPATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N-NL 126 (477)
T ss_pred EEEcCCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-CC
Confidence 99987532223477999999999984 34553 999999999998874 2 23
Q ss_pred CCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 186 PPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 186 ~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
++++|.++|+.+||.|+.||+.+..+. .+.+..+|.|..
T Consensus 127 ~~~~i~~~~~~dEE~g~~Gs~~l~~~~---~~~~~~~~~d~~ 165 (477)
T TIGR01893 127 KHPPLELLFTVDEETGMDGALGLDENW---LSGKILINIDSE 165 (477)
T ss_pred CCCCEEEEEEeccccCchhhhhcChhh---cCCcEEEEecCC
Confidence 566999999999999999999987532 234668888854
No 38
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.16 E-value=4.3e-10 Score=124.50 Aligned_cols=128 Identities=25% Similarity=0.346 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEE
Q 004166 55 RAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (770)
Q Consensus 55 ra~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~ 134 (770)
|.++.+++|. +|.. .|.++.++++||.++|+++| ++++.+. ..+ .+.+..|++++
T Consensus 1 ~~~~~~~~l~-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~--~~~-------------~~~~~~~~~~~ 55 (361)
T TIGR01883 1 RLKKYFLELI-QIDS---ESGKEKAILTYLKKQITKLG------IPVSLDE--VPA-------------EVSNDNNLIAR 55 (361)
T ss_pred ChHHHHHHHe-ecCC---CCCcHHHHHHHHHHHHHHcC------CEEEEec--ccc-------------ccCCCceEEEE
Confidence 3567788887 4433 34556689999999999998 3443322 110 01124699999
Q ss_pred EeCCCCCCCCCeEEEeecCCCCCC--------------CCCC----CCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 004166 135 ISSTDSQDTDPSVLMNGHFDGPLS--------------SPGA----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (770)
Q Consensus 135 i~g~~~~~~~~~Vll~aH~Dsv~~--------------s~GA----~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~ 196 (770)
++|++ +.+.|++++|+|+||. ++|+ .|+++|+|++|++++.|++.+ .++++|.|+|+.
T Consensus 56 ~~g~~---~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~ 131 (361)
T TIGR01883 56 LPGTV---KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTV 131 (361)
T ss_pred EeCCC---CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEc
Confidence 98763 2367999999999984 4677 899999999999999998765 567899999999
Q ss_pred cccCCccChHHHHhh
Q 004166 197 AEELFMLGAHGFMKA 211 (770)
Q Consensus 197 ~EE~gl~GS~~fi~~ 211 (770)
+||.|..|++.+.++
T Consensus 132 ~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 132 KEELGLIGMRLFDES 146 (361)
T ss_pred ccccCchhHhHhChh
Confidence 999999999988764
No 39
>PRK07079 hypothetical protein; Provisional
Probab=99.15 E-value=5.4e-10 Score=128.45 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=106.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHH----HHHHhcccccCCceeEEEEEeeecCcccceeccccccccc
Q 004166 51 FSEARAIQHVRVLADEIGDRQEGRPG-LREAAVYIK----TQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~R~~gS~~-~e~a~~yl~----~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y 125 (770)
++++++.+.|++|. +|.+ +.+.++ +...++|+. ++|++.| +++++..... .
T Consensus 14 ~~~~~~~~~L~~LV-~ipS-vs~~~~~~~~~~~~l~~~~~~~l~~~G------~~~~~~~~~~----------------~ 69 (469)
T PRK07079 14 FDSGAFFADLARRV-AYRT-ESQNPDRAPALRAYLTDEIAPALAALG------FTCRIVDNPV----------------A 69 (469)
T ss_pred hccHHHHHHHHHHh-ccCC-CCCCcccHHHHHHHHHHHHHHHHHHCC------CeEEEEecCC----------------C
Confidence 34457888999998 5554 233222 335666664 4677766 4444422110 0
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeecCCCCCC----------------------CCCCCCChhHHHHHHHHHHHHHhc-
Q 004166 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------SPGAGDCGSCVASMLELARLTIDS- 182 (770)
Q Consensus 126 ~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~----------------------s~GA~D~~sgva~~LE~ar~l~~~- 182 (770)
.+..||++++.|.+ +.+.|++++|+|+||. ++|+.|+++|++++|++++.+.+.
T Consensus 70 ~~~~~vva~~~~~~---~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~ 146 (469)
T PRK07079 70 GGGPFLIAERIEDD---ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAAR 146 (469)
T ss_pred CCCCEEEEEeCCCC---CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhc
Confidence 12369999986532 2467999999999972 579999999999999999998654
Q ss_pred CCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 183 GWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 183 ~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
+.+++++|.|++.++||.|..|++.++++++...+.+++|..|..
T Consensus 147 ~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~~ 191 (469)
T PRK07079 147 GGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDGP 191 (469)
T ss_pred CCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCCC
Confidence 467889999999999999999999999987422235678887753
No 40
>PRK05469 peptidase T; Provisional
Probab=99.14 E-value=6.6e-10 Score=125.39 Aligned_cols=140 Identities=14% Similarity=0.210 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCCCC------CC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccc
Q 004166 55 RAIQHVRVLADEIGDRQE------GR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRN 127 (770)
Q Consensus 55 ra~~~l~~L~~~ig~R~~------gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~ 127 (770)
.+.+.+++|. +|.+-.. .| .+++++++||+++++++|.+ .++++ +
T Consensus 3 ~~~~~l~~~~-~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~----------------------~ 54 (408)
T PRK05469 3 KLLERFLRYV-KIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD----------------------E 54 (408)
T ss_pred hHHHHHHhhE-EeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC----------------------C
Confidence 4667788887 4443221 11 34568999999999999831 13332 1
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCC----------------------------------------------CCC
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------------------------------SPG 161 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~----------------------------------------------s~G 161 (770)
..||+++++|+. .++.+.|++.+|+|+||. +.|
T Consensus 55 ~~~v~~~~~g~~-~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG 133 (408)
T PRK05469 55 NGYVMATLPANV-DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDG 133 (408)
T ss_pred CeEEEEEecCCC-CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCC
Confidence 248999998853 123578999999999964 236
Q ss_pred C----CCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 162 A----GDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 162 A----~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
+ .|+++|+|+||.+++.|++.+..++.+|+|+|..+||.| .|++.++.+.. ..+..+.+|..
T Consensus 134 ~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~~~~~---~~~~~~~~~~~ 199 (408)
T PRK05469 134 TTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFDVEKF---GADFAYTVDGG 199 (408)
T ss_pred CEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhhhhhc---CCcEEEEecCC
Confidence 5 999999999999999998876667789999999999998 89998874321 23345555543
No 41
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.13 E-value=1e-09 Score=124.58 Aligned_cols=155 Identities=16% Similarity=0.176 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEE---eeecCcccceeccccccccccccce
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEE---NVVNGSFNMIFLGHSISLGYRNHTN 130 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~---~~~~g~~~~~~~~~~~~~~y~~~~N 130 (770)
+++.+.+++|. +|.+ .|.++.++++||.++|+++|. +++... ........ .......+.+..|
T Consensus 20 ~~~~~~l~~li-~ipS---~s~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~n 85 (427)
T PRK06837 20 DAQVAFTQDLV-RFPS---TRGAEAPCQDFLARAFRERGY------EVDRWSIDPDDLKSHPG----AGPVEIDYSGAPN 85 (427)
T ss_pred HHHHHHHHHHh-ccCC---CCCcHHHHHHHHHHHHHHCCC------ceEEecCCHHHhhhccc----ccccccccCCCce
Confidence 45666777777 4433 355566899999999999983 333211 00000000 0001112345689
Q ss_pred EEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 004166 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (770)
Q Consensus 131 Vi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~ 189 (770)
|+++++|+++ +.+.|++++|+|+||. ++|+.|+++|++++|.+++.+++.+.+++++
T Consensus 86 l~a~~~g~~~--~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~ 163 (427)
T PRK06837 86 VVGTYRPAGK--TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAAR 163 (427)
T ss_pred EEEEecCCCC--CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999987532 2468999999999985 4599999999999999999999888788999
Q ss_pred EEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 190 IIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 190 I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
|.|+|+.+||.+..|+...+.+. . +.+++|..|..
T Consensus 164 i~~~~~~dEE~~g~g~~~~~~~~-~--~~d~~iv~ep~ 198 (427)
T PRK06837 164 VHFQSVIEEESTGNGALSTLQRG-Y--RADACLIPEPT 198 (427)
T ss_pred EEEEEEeccccCCHhHHHHHhcC-c--CCCEEEEcCCC
Confidence 99999999998888887766532 1 34556655543
No 42
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.13 E-value=1.1e-09 Score=126.18 Aligned_cols=138 Identities=22% Similarity=0.257 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccce
Q 004166 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~N 130 (770)
...+++.+.+++|+ +| |+ +|.++++.++|+.++++++| ++++++. ..|
T Consensus 7 ~~~~~~~~~l~~Lv-~i-ps--~S~~e~~~~~~l~~~~~~~G------~~~~~d~----------------------~gn 54 (485)
T PRK15026 7 LSPQPLWDIFAKIC-SI-PH--PSYHEEQLAEYIVGWAKEKG------FHVERDQ----------------------VGN 54 (485)
T ss_pred cCHHHHHHHHHHHh-CC-CC--CCCCHHHHHHHHHHHHHhCC------CEEEEEe----------------------cCe
Confidence 34677899999999 44 34 45556699999999999998 4454431 249
Q ss_pred EEEEEeCCCCCCCCCeEEEeecCCCCCC------------------------CCCC---CCChhHHHHHHHHHHHHHhcC
Q 004166 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS------------------------SPGA---GDCGSCVASMLELARLTIDSG 183 (770)
Q Consensus 131 Vi~~i~g~~~~~~~~~Vll~aH~Dsv~~------------------------s~GA---~D~~sgva~~LE~ar~l~~~~ 183 (770)
++++.+++.+.+..+.|++.+|+|+|+. ++|+ .|+++|+|++|+++ .+.+
T Consensus 55 vi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~ 131 (485)
T PRK15026 55 ILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADEN 131 (485)
T ss_pred EEEEEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCC
Confidence 9999876422234577999999999974 3677 49999999998876 3334
Q ss_pred CCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 184 ~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
. ++.+|.++|+.+||.|+.||+.+.. . ..+.+++||+|..
T Consensus 132 ~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 132 V-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred C-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 3 3679999999999999999999854 2 2467999999986
No 43
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.12 E-value=7.7e-10 Score=123.49 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhH-HHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGL-REAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~-e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
..+.+.+++|. +|.+ .|.++ .++.+||.++|+++| +++++..... ....||+
T Consensus 4 ~~~~~~l~~lv-~i~S---~s~~~~~~~~~~l~~~l~~~G------~~~~~~~~~~-----------------~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLV-AFDT---VSRDSNLALIEWVRDYLAAHG------VESELIPDPE-----------------GDKANLF 56 (385)
T ss_pred hhHHHHHHHHh-CCCC---cCCCccHHHHHHHHHHHHHcC------CeEEEEecCC-----------------CCcccEE
Confidence 34678888888 5443 23333 389999999999998 4444432111 1236999
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
++++++ +.+.|++.+|+|+|+. ++|+.|+++++|++|++++.|.+. +++++|.|
T Consensus 57 a~~~~~----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~ 130 (385)
T PRK07522 57 ATIGPA----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHL 130 (385)
T ss_pred EEeCCC----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEE
Confidence 998653 1367999999999873 689999999999999999999876 46789999
Q ss_pred EEeCcccCCccChHHHHhhccc-cCceeEEEEeccC
Q 004166 193 LFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEAS 227 (770)
Q Consensus 193 lf~~~EE~gl~GS~~fi~~~~~-~~~i~a~INlD~~ 227 (770)
+|..+||.|..|++.++++... ..+..++|..|..
T Consensus 131 ~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep~ 166 (385)
T PRK07522 131 AFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEPT 166 (385)
T ss_pred EEEeccccCCccHHHHHHHhhhcCCCCCEEEEccCC
Confidence 9999999988999999975421 2235666665644
No 44
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.10 E-value=1.5e-09 Score=118.44 Aligned_cols=144 Identities=24% Similarity=0.272 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccce
Q 004166 52 SEARAIQHVRVLADEIGDRQEGRPGLR-EAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTN 130 (770)
Q Consensus 52 s~era~~~l~~L~~~ig~R~~gS~~~e-~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~N 130 (770)
+.+|-++.|+--+. .| .++.. ..++|+.++.+.++... -.++... ...+
T Consensus 27 ~v~~f~eylRi~Tv--~p----~~dy~~a~~~Fl~~~a~~l~l~~---~~i~~~p---------------------~~~~ 76 (420)
T KOG2275|consen 27 SVTRFREYLRIPTV--QP----NPDYTIACADFLKKYAKSLGLTV---QKIESEP---------------------GKYV 76 (420)
T ss_pred HHHHHHHHhhcccc--cc----CCCccHHHHHHHHHHHHhcCCce---eEEEecC---------------------ceeE
Confidence 44555555554441 12 23333 78999999999988432 1122111 1368
Q ss_pred EEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q 004166 131 IVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRP 189 (770)
Q Consensus 131 Vi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~ 189 (770)
++.+++|++++ -+.||+++|.|+||. ++|+.|+++-++++||++|.|+.+|.+|+|+
T Consensus 77 ~l~T~~GS~P~--L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rt 154 (420)
T KOG2275|consen 77 LLYTWLGSDPE--LPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRT 154 (420)
T ss_pred EEEEeeCCCCC--ccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCce
Confidence 99999999763 467999999999985 6899999999999999999999999999999
Q ss_pred EEEEEeCcccCC-ccChHHHHhhccccCceeEEEEeccCC
Q 004166 190 IIFLFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 190 I~flf~~~EE~g-l~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|...|..+||.| ..|++.|++ +...++....+.+|-.|
T Consensus 155 i~lsfvpDEEi~G~~Gm~~fa~-~~~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 155 IHLSFVPDEEIGGHIGMKEFAK-TEEFKKLNLGFILDEGG 193 (420)
T ss_pred EEEEecCchhccCcchHHHHhh-hhhhcccceeEEecCCC
Confidence 999999999976 899999997 33223334444455443
No 45
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.10 E-value=1.1e-09 Score=120.86 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
.+++.+.+++|. +|.+ .|.+++++++||.++++++| ++++++. ..|++
T Consensus 9 ~~~~~~~l~~lv-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~~----------------------~~~~~ 56 (346)
T PRK00466 9 KQKAKELLLDLL-SIYT---PSGNETNATKFFEKISNELN------LKLEILP----------------------DSNSF 56 (346)
T ss_pred HHHHHHHHHHHh-cCCC---CCCCHHHHHHHHHHHHHHcC------CeEEEec----------------------CCCcE
Confidence 468889999998 5544 34556689999999999998 4444431 12443
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~ 200 (770)
. .|. +.|++++|+|+||. ++|+.|+++|+|++|++++.+++.+ .++.|+++.+||.
T Consensus 57 ~--~g~------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~ 124 (346)
T PRK00466 57 I--LGE------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEES 124 (346)
T ss_pred e--cCC------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCccc
Confidence 2 331 34999999999985 5999999999999999999998764 3589999999999
Q ss_pred CccChHHHHhhccccCceeEEEEeccCC
Q 004166 201 FMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 201 gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|..|++.+++++ .+.+++|..|..+
T Consensus 125 g~~G~~~l~~~~---~~~d~~i~~ep~~ 149 (346)
T PRK00466 125 TSIGAKELVSKG---FNFKHIIVGEPSN 149 (346)
T ss_pred CCccHHHHHhcC---CCCCEEEEcCCCC
Confidence 989999999864 2456777777654
No 46
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.10 E-value=1.1e-09 Score=125.82 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccc
Q 004166 54 ARAIQHVRVLADEIGDRQEG---------RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~g---------S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (770)
+++.+.+++|. +|.+-..+ -+++.++.+|+.+++++.| ++++.
T Consensus 14 ~~~~~~l~~lv-~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G------~~~~~--------------------- 65 (466)
T PRK07318 14 DDLIEDLQELL-RINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDG------FKTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHh-ccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCC------CEEEE---------------------
Confidence 56778888888 55552221 1234589999999999988 33332
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 004166 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 185 (770)
Q Consensus 125 y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~ 185 (770)
..|+++++++.+ +++.|++++|+|+||. ++|+.|+++|+++++.+++.|++.+.+
T Consensus 66 ---~~n~~~~~~~~~---~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~ 139 (466)
T PRK07318 66 ---VDNYAGHIEYGE---GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLP 139 (466)
T ss_pred ---ecCccceEEECC---CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCC
Confidence 125566654321 2357999999999973 689999999999999999999988888
Q ss_pred CCCCEEEEEeCcccCCccChHHHHhhcc
Q 004166 186 PPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (770)
Q Consensus 186 ~~~~I~flf~~~EE~gl~GS~~fi~~~~ 213 (770)
++++|.|+++.+||.|..|++.++++++
T Consensus 140 ~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 140 LSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8889999999999999999999998764
No 47
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.09 E-value=1.1e-09 Score=121.13 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCC
Q 004166 59 HVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISST 138 (770)
Q Consensus 59 ~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~ 138 (770)
.+++|. +|.+- .+. ++.++++||.++|+++| ++++++.... + .+..|+++++.|+
T Consensus 2 ~l~~lv-~i~S~-s~~-~~~~~~~~l~~~l~~~G------~~~~~~~~~~-~---------------~~~~nl~~~~~~~ 56 (364)
T TIGR01892 2 ILTKLV-AFDST-SFR-PNVDLIDWAQAYLEALG------FSVEVQPFPD-G---------------AEKSNLVAVIGPS 56 (364)
T ss_pred hHHHhh-CcCCc-CCc-cHHHHHHHHHHHHHHcC------CeEEEEeCCC-C---------------CccccEEEEecCC
Confidence 356676 44432 221 23589999999999998 4555433110 0 1246999999653
Q ss_pred CCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcc
Q 004166 139 DSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAE 198 (770)
Q Consensus 139 ~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~E 198 (770)
+ .+.|++.+|+|+||. ++|+.|+++|++++|.+++.|++. +.+++|.|+|..+|
T Consensus 57 ~----~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~E 130 (364)
T TIGR01892 57 G----AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADE 130 (364)
T ss_pred C----CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEecc
Confidence 2 357999999999973 689999999999999999999875 35779999999999
Q ss_pred cCCccChHHHHhhccccCceeEEEEeccC
Q 004166 199 ELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 199 E~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
|.|..|++.++++.. .+.+.++..|..
T Consensus 131 E~g~~G~~~~~~~~~--~~~d~~i~~ep~ 157 (364)
T TIGR01892 131 EVGCTGAPKMIEAGA--GRPRHAIIGEPT 157 (364)
T ss_pred ccCCcCHHHHHHhcC--CCCCEEEECCCC
Confidence 999999999998654 234456665543
No 48
>PRK13381 peptidase T; Provisional
Probab=99.09 E-value=1.4e-09 Score=122.53 Aligned_cols=121 Identities=19% Similarity=0.307 Sum_probs=92.3
Q ss_pred ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeecC
Q 004166 74 RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHF 153 (770)
Q Consensus 74 S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~ 153 (770)
+++++++++||.++|+++|.+ .++++ +..||+++++|+++ ..+.|++++|+
T Consensus 27 ~~~~~~~~~~l~~~l~~~G~~-----~~~~~----------------------~~~nvi~~~~g~~~--~~~~lll~~H~ 77 (404)
T PRK13381 27 TPGQHELAKLLADELRELGLE-----DIVID----------------------EHAIVTAKLPGNTP--GAPRIGFIAHL 77 (404)
T ss_pred ChhHHHHHHHHHHHHHHcCCC-----cEEEc----------------------CCeEEEEEEecCCC--CCCeEEEEEEe
Confidence 455668999999999999832 12221 12599999988642 23789999999
Q ss_pred CCCCCC----------------------------------------------CCC----CCChhHHHHHHHHHHHHHhcC
Q 004166 154 DGPLSS----------------------------------------------PGA----GDCGSCVASMLELARLTIDSG 183 (770)
Q Consensus 154 Dsv~~s----------------------------------------------~GA----~D~~sgva~~LE~ar~l~~~~ 183 (770)
|+||.+ +|+ .|+++|+|++|.+++.|.+.+
T Consensus 78 D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~ 157 (404)
T PRK13381 78 DTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE 157 (404)
T ss_pred cCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC
Confidence 999742 367 999999999999999998764
Q ss_pred CCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC
Q 004166 184 WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 184 ~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
.++.+|.|+|..+||.|..|++.++.+. + +....+.+|..
T Consensus 158 -~~~g~i~~~~~~dEE~g~~G~~~~~~~~-~--~~d~~~~~~~~ 197 (404)
T PRK13381 158 -VEHGDIVVAFVPDEEIGLRGAKALDLAR-F--PVDFAYTIDCC 197 (404)
T ss_pred -CCCCCEEEEEEcccccccccHHHHHHhc-C--CCCEEEEecCC
Confidence 4577999999999999999999997642 2 24555556643
No 49
>PRK06156 hypothetical protein; Provisional
Probab=99.09 E-value=2.9e-09 Score=124.04 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhcCCC-CCC-C----hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccc
Q 004166 53 EARAIQHVRVLADEIGDR-QEG-R----PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYR 126 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R-~~g-S----~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~ 126 (770)
.+++.+.+++|. +|.+- ..+ + ++.....+||.+++++.| ++++. .
T Consensus 45 ~~~~~~~l~~lv-~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G------~~~~~----~------------------ 95 (520)
T PRK06156 45 GAAAIESLRELV-AFPTVRVEGVPQHENPEFIGFKKLLKSLARDFG------LDYRN----V------------------ 95 (520)
T ss_pred HHHHHHHHHHhc-CcCcccCCCCCccCCccHHHHHHHHHHHHHHCC------CeEEe----c------------------
Confidence 356677788887 44431 111 1 112356799999999988 33321 0
Q ss_pred ccceEE-EEEeCCCCCCCCCeEEEeecCCCCCC-------------------------CCCCCCChhHHHHHHHHHHHHH
Q 004166 127 NHTNIV-MRISSTDSQDTDPSVLMNGHFDGPLS-------------------------SPGAGDCGSCVASMLELARLTI 180 (770)
Q Consensus 127 ~~~NVi-~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------------s~GA~D~~sgva~~LE~ar~l~ 180 (770)
..||+ ++++|++ ++.|++++|+|+||. ++|+.|++.|+++++++++.|.
T Consensus 96 -~~~v~~~~~~g~~----~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~ 170 (520)
T PRK06156 96 -DNRVLEIGLGGSG----SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIK 170 (520)
T ss_pred -CCeEEEEEecCCC----CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHH
Confidence 12444 6776642 357999999999973 5689999999999999999998
Q ss_pred hcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEecc
Q 004166 181 DSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 181 ~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
+.+.+++++|.|+|+.+||.|..|++.++.++. ..+.++|+|+
T Consensus 171 ~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 171 DSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 888778889999999999999999999998653 3467788885
No 50
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.08 E-value=1.5e-09 Score=119.23 Aligned_cols=131 Identities=23% Similarity=0.229 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~ 133 (770)
|++.+.+++|. ++.. .|.++.++++||.++|+++| ++++.+. . + +..|+++
T Consensus 2 ~~~~~~~~~lv-~ips---~s~~e~~~~~~l~~~l~~~G------~~v~~~~--~-~----------------~~~~~~~ 52 (347)
T PRK08652 2 ERAKELLKQLV-KIPS---PSGQEDEIALHIMEFLESLG------YDVHIES--D-G----------------EVINIVV 52 (347)
T ss_pred hhHHHHHHHHh-cCCC---CCCchHHHHHHHHHHHHHcC------CEEEEEe--c-C----------------ceeEEEc
Confidence 57888899998 4443 34455689999999999998 4554432 1 1 1347765
Q ss_pred EEeCCCCCCCCCeEEEeecCCCCCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 004166 134 RISSTDSQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (770)
Q Consensus 134 ~i~g~~~~~~~~~Vll~aH~Dsv~~------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g 201 (770)
+. .+.|++.+|+|+||. ++|+.|+++|+|+||++++.|.+. .++++|.|+|..+||.|
T Consensus 53 ---~~-----~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g 122 (347)
T PRK08652 53 ---NS-----KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEG 122 (347)
T ss_pred ---CC-----CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccC
Confidence 32 256999999999984 579999999999999999999854 34679999999999998
Q ss_pred ccChHHHHhhccccCceeEEEEeccC
Q 004166 202 MLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 202 l~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
..|++.++++++ .+.+|..|..
T Consensus 123 ~~G~~~~~~~~~----~d~~i~~ep~ 144 (347)
T PRK08652 123 GRGSALFAERYR----PKMAIVLEPT 144 (347)
T ss_pred ChhHHHHHHhcC----CCEEEEecCC
Confidence 899999998642 2577777864
No 51
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.07 E-value=2.1e-09 Score=118.52 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhc-ccccCCceeEEEEEeeecCcccceeccccccccccccceE
Q 004166 53 EARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGI-KERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~i-g~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NV 131 (770)
++++.+.+++|. ++. ..|.+++++++||.++++++ + +++ +. ...|+
T Consensus 6 ~~~~~~~l~~li-~ip---s~s~~e~~~~~~l~~~l~~~~~------~~~--~~---------------------~~~~~ 52 (352)
T PRK13007 6 AADLAELTAALV-DIP---SVSGDEKALADAVEAALRALPH------LEV--IR---------------------HGNSV 52 (352)
T ss_pred HHHHHHHHHHHh-cCC---CCCchHHHHHHHHHHHHHhCcC------ceE--Ee---------------------cCCeE
Confidence 357788888888 433 23455668999999999986 4 222 11 01489
Q ss_pred EEEEeCCCCCCCCCeEEEeecCCCCCC--------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCc
Q 004166 132 VMRISSTDSQDTDPSVLMNGHFDGPLS--------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGA 197 (770)
Q Consensus 132 i~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~ 197 (770)
++++.+.. .+.|++++|+|+||. ++|+.|+++|+|++|.+++.+. +++++|.|+|.++
T Consensus 53 ~~~~~~~~----~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~ 124 (352)
T PRK13007 53 VARTDLGR----PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDC 124 (352)
T ss_pred EEEccCCC----CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEec
Confidence 99984321 235999999999984 5899999999999999999994 3678999999999
Q ss_pred ccCCc--cChHHHHhhccccCceeEEEEeccC
Q 004166 198 EELFM--LGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 198 EE~gl--~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
||.|. .|+..++.+++...+.+++|+.|..
T Consensus 125 EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 125 EEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred ccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 99854 5888888766544567888988864
No 52
>PRK07205 hypothetical protein; Provisional
Probab=99.06 E-value=2.1e-09 Score=122.79 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCCh--------hHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccc
Q 004166 52 SEARAIQHVRVLADEIGDRQEGRP--------GLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISL 123 (770)
Q Consensus 52 s~era~~~l~~L~~~ig~R~~gS~--------~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~ 123 (770)
+.+++.+.|++|. +|.+- .+.+ +..++.+|+.+++++.| ++++++. .
T Consensus 9 ~~~~~~~~l~~lv-~i~S~-s~~~~~~~~~~~~~~~~~~~~~~~l~~~g------~~~~~~~---~-------------- 63 (444)
T PRK07205 9 VQDACVAAIKTLV-SYPSV-LNEGENGTPFGQAIQDVLEATLDLCQGLG------FKTYLDP---K-------------- 63 (444)
T ss_pred hHHHHHHHHHHHc-ccccc-cCCCcCCCCCchhHHHHHHHHHHHHHhCC------CEEEEcC---C--------------
Confidence 4567788888887 54431 2211 22468899999999988 4444321 1
Q ss_pred cccccceEEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhc
Q 004166 124 GYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDS 182 (770)
Q Consensus 124 ~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~ 182 (770)
..|+++++ |+ +++.|++++|+|+||. |+|+.|++.|+|++|++++.+++.
T Consensus 64 ----~~~~~~~~-g~----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~ 134 (444)
T PRK07205 64 ----GYYGYAEI-GQ----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDA 134 (444)
T ss_pred ----CeEEEEEe-cC----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHc
Confidence 12555655 43 2357999999999974 689999999999999999999998
Q ss_pred CCCCCCCEEEEEeCcccCCccChHHHHhhcc
Q 004166 183 GWIPPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (770)
Q Consensus 183 ~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~ 213 (770)
+.+++++|.|+|.++||.|..|++.|+++.+
T Consensus 135 ~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~ 165 (444)
T PRK07205 135 GVQFNKRIRFIFGTDEETLWRCMNRYNEVEE 165 (444)
T ss_pred CCCCCCcEEEEEECCcccCcccHHHHHhCCC
Confidence 8888899999999999999999999987543
No 53
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.06 E-value=2.7e-09 Score=119.06 Aligned_cols=140 Identities=24% Similarity=0.271 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCh-----hHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccccc
Q 004166 54 ARAIQHVRVLADEIGDRQEGRP-----GLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNH 128 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~-----~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~ 128 (770)
+++.+.+++|. ++.. ..+.+ ++.++++||.+.|+++| ++++++. ..+ ..+.
T Consensus 5 ~~~i~~l~~lv-~i~s-~s~~e~~~~~~~~~~~~~l~~~l~~~g------~~~~~~~--~~~--------------~~~~ 60 (383)
T PRK05111 5 PSFIEMYRALI-ATPS-ISATDPALDQSNRAVIDLLAGWFEDLG------FNVEIQP--VPG--------------TRGK 60 (383)
T ss_pred hHHHHHHHHHh-CcCC-cCCCCcccccchHHHHHHHHHHHHHCC------CeEEEEe--cCC--------------CCCC
Confidence 46788888888 5444 22221 23479999999999998 4454432 111 0123
Q ss_pred ceEEEEEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCC
Q 004166 129 TNIVMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPR 188 (770)
Q Consensus 129 ~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~ 188 (770)
.|+++++ |++ ++.|++.+|+|+||. ++|+.|++++++++|++++.|++. .+++
T Consensus 61 ~nvia~~-g~~----~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~ 133 (383)
T PRK05111 61 FNLLASL-GSG----EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKK 133 (383)
T ss_pred ceEEEEe-CCC----CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCC
Confidence 6999999 432 135999999999963 789999999999999999999864 3568
Q ss_pred CEEEEEeCcccCCccChHHHHhhccccCceeEEEEecc
Q 004166 189 PIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 189 ~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
+|+|+|.++||.|..|++.++++... +.+.+|.-|.
T Consensus 134 ~i~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~ep 169 (383)
T PRK05111 134 PLYILATADEETSMAGARAFAEATAI--RPDCAIIGEP 169 (383)
T ss_pred CeEEEEEeccccCcccHHHHHhcCCC--CCCEEEEcCC
Confidence 89999999999999999999975432 2355565553
No 54
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.06 E-value=2.4e-09 Score=119.06 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEE
Q 004166 55 RAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (770)
Q Consensus 55 ra~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~ 134 (770)
++.+.+++|. ++ +.-|..++++++||.++|+++| ++++... . ....|++++
T Consensus 3 ~~~~~l~~Lv-~i---ps~s~~e~~~~~~l~~~l~~~G------~~~~~~~--~-----------------~~~~n~~~~ 53 (375)
T PRK13009 3 DVLELAQDLI-RR---PSVTPDDAGCQDLLAERLEALG------FTCERMD--F-----------------GDVKNLWAR 53 (375)
T ss_pred hHHHHHHHHh-CC---CCCCCchhhHHHHHHHHHHHcC------CeEEEec--c-----------------CCCcEEEEE
Confidence 3556677776 32 3445566789999999999988 3443221 1 123699998
Q ss_pred EeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 004166 135 ISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (770)
Q Consensus 135 i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~fl 193 (770)
+ |. +.+.|++++|+|+||. ++|+.|+++|++++|++++.+++.+.+++++|+|+
T Consensus 54 ~-g~----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~ 128 (375)
T PRK13009 54 R-GT----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFL 128 (375)
T ss_pred e-cC----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 7 43 2367999999999984 46899999999999999999988777788999999
Q ss_pred EeCcccCC-ccChHHHHhhcc-ccCceeEEEEeccC
Q 004166 194 FNGAEELF-MLGAHGFMKAHK-WRDSVGAVINVEAS 227 (770)
Q Consensus 194 f~~~EE~g-l~GS~~fi~~~~-~~~~i~a~INlD~~ 227 (770)
++.+||.+ ..|++.+++... ...+.+++|..|..
T Consensus 129 ~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep~ 164 (375)
T PRK13009 129 ITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGEPT 164 (375)
T ss_pred EEeecccccccCHHHHHHHHHHcCcCCCEEEEcCCC
Confidence 99999975 469998876421 12245666666643
No 55
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.06 E-value=2.8e-09 Score=119.40 Aligned_cols=148 Identities=23% Similarity=0.240 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceE
Q 004166 53 EARAIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NV 131 (770)
.+++.+.+++|. +|.+- .++ .+++++++||.++++++| ++++++.. ..+... .......|+
T Consensus 5 ~~~~~~~l~~lv-~i~S~-s~~~~~~~~~a~~l~~~l~~~G------~~~~~~~~-~~~~~~---------~~~~~~~~~ 66 (394)
T PRK08651 5 MFDIVEFLKDLI-KIPTV-NPPGENYEEIAEFLRDTLEELG------FSTEIIEV-PNEYVK---------KHDGPRPNL 66 (394)
T ss_pred HHHHHHHHHHHh-cCCcc-CCCCcCHHHHHHHHHHHHHHcC------CeEEEEec-Cccccc---------cccCCcceE
Confidence 467888899998 55542 222 344589999999999998 44544321 111100 000124688
Q ss_pred EEEEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEE
Q 004166 132 VMRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (770)
Q Consensus 132 i~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~ 191 (770)
+++. |.+ ++.|++.+|+|+||. ++|+.|++.|++++|++++.+++.+ +++|.
T Consensus 67 ~~~~-~~~----~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~ 138 (394)
T PRK08651 67 IARR-GSG----NPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIE 138 (394)
T ss_pred EEEe-CCC----CceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEE
Confidence 8865 321 267999999999974 4788999999999999999998764 78999
Q ss_pred EEEeCcccCCccChHHHHhhccccCceeEEEEeccCC
Q 004166 192 FLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 192 flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
|+|..+||.|..|++.++++... +.+.++..|..|
T Consensus 139 ~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 139 LAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred EEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 99999999988999999986532 256777777554
No 56
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.06 E-value=2.3e-09 Score=121.17 Aligned_cols=128 Identities=19% Similarity=0.254 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCCCCC-------CChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccccc
Q 004166 54 ARAIQHVRVLADEIGDRQE-------GRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYR 126 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~-------gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~ 126 (770)
+|+.+.+-+++ +|.+..- .+.++++.++||.++|+++|.+ ++++|.
T Consensus 3 ~~~~~~f~~~~-~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d~--------------------- 55 (410)
T TIGR01882 3 EELLPRFLTYV-KVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYDE--------------------- 55 (410)
T ss_pred hHHHHHHHhhE-EEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEcC---------------------
Confidence 56667777776 4444221 1234557999999999999931 255541
Q ss_pred ccceEEEEEeCCCCCCCCCeEEEeecCCCCCC----------------------------------------------CC
Q 004166 127 NHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS----------------------------------------------SP 160 (770)
Q Consensus 127 ~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~----------------------------------------------s~ 160 (770)
+..||+++++|+.+ ...+.|++.||+|||+. +.
T Consensus 56 ~~gnv~~~~~~~~~-~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~ 134 (410)
T TIGR01882 56 KNGYVIATIPSNTD-KDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTD 134 (410)
T ss_pred CceEEEEEecCCCC-CCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcC
Confidence 13699999988642 11378999999999972 11
Q ss_pred C----CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHh
Q 004166 161 G----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMK 210 (770)
Q Consensus 161 G----A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~ 210 (770)
| +.||++|+|+||++++.|++.+..++.+|.|+|+.+||.| .|++.+..
T Consensus 135 g~~l~G~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 135 GTTLLGADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred CCEeecccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 2 3799999999999999998753345779999999999987 59988765
No 57
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=99.02 E-value=7.6e-09 Score=112.29 Aligned_cols=195 Identities=21% Similarity=0.213 Sum_probs=130.6
Q ss_pred cccceEEEEEe-CCC---CCCCCCeEEEeecCCCCCC----CCCCCCChhHHHHHHHHHHHHHhc----CCCCCCCEEEE
Q 004166 126 RNHTNIVMRIS-STD---SQDTDPSVLMNGHFDGPLS----SPGAGDCGSCVASMLELARLTIDS----GWIPPRPIIFL 193 (770)
Q Consensus 126 ~~~~NVi~~i~-g~~---~~~~~~~Vll~aH~Dsv~~----s~GA~D~~sgva~~LE~ar~l~~~----~~~~~~~I~fl 193 (770)
..+.||.++++ |-. ..++-|.|++.||||+... ++||+-||||++++||++|.+++- ..++++++.|+
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 45789999998 422 1235689999999999754 789999999999999999999763 35678999999
Q ss_pred EeCcccCCccChHHHHhhc--cccCceeEEEEeccCCCCCCceEEeeC--CC-C-chhhHhh---hhccCcccccccccc
Q 004166 194 FNGAEELFMLGAHGFMKAH--KWRDSVGAVINVEASGTGGLDLVCQSG--PS-S-WPSSVYA---QSAIYPMAHSAAQDV 264 (770)
Q Consensus 194 f~~~EE~gl~GS~~fi~~~--~~~~~i~a~INlD~~G~gg~~~lfq~g--p~-~-~~~~~y~---~~~~~p~~~~l~~e~ 264 (770)
.++|--...+|++.|++-. ..++++..+|.+|++|.+..++....+ |. . ...+.++ ..+++-.......
T Consensus 271 lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~~k-- 348 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTK-- 348 (555)
T ss_pred EccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEEEE--
Confidence 9999999999999999843 346899999999999998655544333 21 1 1122222 1111111000000
Q ss_pred CCCCCC-----CCchHHHhccCCCCcEEEEEEecCCc--cCcCcC-cccCCCCHHHHHHHHHHHHHHH
Q 004166 265 FPVIPG-----DTDYRIFSQDYGDIPGLDIIFLIGGY--YYHTSH-DTVDRLLPGSVQARGDNLFNVL 324 (770)
Q Consensus 265 f~~ips-----~tD~~~F~~~~~gIPgld~a~~~~~~--~YHT~~-Dt~d~id~~~lq~~g~~~l~l~ 324 (770)
-..+.- .=.|..|.. ..+|+..+....... .-.+.. |+...+|.+++-+..+.+.+.+
T Consensus 349 hkkInla~s~lAWEHErFsi--kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAl 414 (555)
T KOG2526|consen 349 HKKINLASSRLAWEHERFSI--KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEAL 414 (555)
T ss_pred eeeEeeccchhhhhhhhhhh--hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHH
Confidence 011111 124777764 679999887654422 344555 8888898888776555544433
No 58
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.02 E-value=3.7e-09 Score=119.27 Aligned_cols=142 Identities=23% Similarity=0.251 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCCCCCC-hhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEE
Q 004166 56 AIQHVRVLADEIGDRQEGR-PGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMR 134 (770)
Q Consensus 56 a~~~l~~L~~~ig~R~~gS-~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~ 134 (770)
+.+.++.|. + +++-| .++.++++|+.+++++++ +.++.+....+ .+..|++++
T Consensus 15 ~~~~l~~lv-~---~~s~s~~~~~~~~~~l~~~l~~~g------~~~~~~~~~~~----------------~~~~n~~~~ 68 (409)
T COG0624 15 ILELLKELV-R---IPSVSAGEEAEAAELLAEWLEELG------FEVEEDEVGPG----------------PGRPNLVAR 68 (409)
T ss_pred HHHHHHHHh-c---CCCCCcccchHHHHHHHHHHHHcC------CceEEeecCCC----------------CCceEEEEE
Confidence 445666665 3 34444 666799999999999988 33443322111 024699999
Q ss_pred EeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEE
Q 004166 135 ISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFL 193 (770)
Q Consensus 135 i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~fl 193 (770)
+.+..+ ++.|++++|+|+||. ++|+.|++.++++++.+++.+.+.+..++.+|.++
T Consensus 69 ~~~~~~---~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~ 145 (409)
T COG0624 69 LGGGDG---GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLL 145 (409)
T ss_pred ecCCCC---CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 988642 278999999999986 57999999999999999999998777888999999
Q ss_pred EeCcccCCccChHHHHhhcc--ccCceeEEEEecc
Q 004166 194 FNGAEELFMLGAHGFMKAHK--WRDSVGAVINVEA 226 (770)
Q Consensus 194 f~~~EE~gl~GS~~fi~~~~--~~~~i~a~INlD~ 226 (770)
+.++||.|..|...++.++. ...+..+.|..|.
T Consensus 146 ~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 146 FTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 99999999999999998764 2456788888887
No 59
>PRK08554 peptidase; Reviewed
Probab=99.01 E-value=5.8e-09 Score=119.00 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCCCCC---ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEE
Q 004166 56 AIQHVRVLADEIGDRQEG---RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 56 a~~~l~~L~~~ig~R~~g---S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+.+.+++|. +|.+...+ ..+..++++|+.+.++++| ++++..+ .. +..|++
T Consensus 3 ~~~~l~~LV-~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G------~~~~~~~--~~-----------------~~~~l~ 56 (438)
T PRK08554 3 VLELLSSLV-SFETVNDPSKGIKPSKECPKFIKDTLESWG------IESELIE--KD-----------------GYYAVY 56 (438)
T ss_pred HHHHHHHHh-CCCCCCCcccCcchHHHHHHHHHHHHHHCC------CeEEEEe--cC-----------------CceEEE
Confidence 567788887 55542211 1234589999999999988 4444321 11 125888
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC--------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS--------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~--------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
+.+ |. .++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++. .++++|.|
T Consensus 57 ~~~-~~----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l 129 (438)
T PRK08554 57 GEI-GE----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIF 129 (438)
T ss_pred EEe-CC----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEE
Confidence 887 32 2356999999999974 689999999999999999999864 36788999
Q ss_pred EEeCcccCCccChHHHHhhcc-ccCceeEEEEeccCC
Q 004166 193 LFNGAEELFMLGAHGFMKAHK-WRDSVGAVINVEASG 228 (770)
Q Consensus 193 lf~~~EE~gl~GS~~fi~~~~-~~~~i~a~INlD~~G 228 (770)
+++++||.|..++..++++.. .....+++|+.|..+
T Consensus 130 ~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 130 AFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999998877776666432 234678899999754
No 60
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.4e-08 Score=109.43 Aligned_cols=150 Identities=23% Similarity=0.215 Sum_probs=97.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCCCCCc--------
Q 004166 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLD-------- 233 (770)
Q Consensus 162 A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~gg~~-------- 233 (770)
|-||..||+++||++|.| + +..++.++.|+|+.-||.|+.||+.... .-+-..+|.+|+.+.+...
T Consensus 178 alDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~----~i~pd~aiavd~~~~~d~~~~~~~~~~ 251 (355)
T COG1363 178 ALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAF----RIKPDIAIAVDVTPAGDTPGVPKGDVK 251 (355)
T ss_pred eccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhcccc----ccCCCEEEEEecccccCCCCCcccccc
Confidence 789999999999999999 4 5678999999999999999999997655 2345678888887765431
Q ss_pred ------e-EEee-CCC-CchhhHh---hhhccCccccccccccCCCCC-CCCchHHHhccCCCCcEEEEEEecCCccCcC
Q 004166 234 ------L-VCQS-GPS-SWPSSVY---AQSAIYPMAHSAAQDVFPVIP-GDTDYRIFSQDYGDIPGLDIIFLIGGYYYHT 300 (770)
Q Consensus 234 ------~-lfq~-gp~-~~~~~~y---~~~~~~p~~~~l~~e~f~~ip-s~tD~~~F~~~~~gIPgld~a~~~~~~~YHT 300 (770)
+ +... ++. +.+.+.. ++...-|+- . ...| .+||-..+...-.|+|...+.... . +-|+
T Consensus 252 lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q----~---~v~~~ggTDA~a~~~~g~gvpta~Igip~-r-y~Hs 322 (355)
T COG1363 252 LGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQ----V---DVSPGGGTDAGAAHLTGGGVPTALIGIPT-R-YIHS 322 (355)
T ss_pred cCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeE----E---EecCCCCccHHHHHHcCCCCceEEEeccc-c-cccC
Confidence 1 1111 111 1111111 111111210 0 1233 578888776434679988876432 1 3577
Q ss_pred cCcccCCCCHHHHHHHHHHHHHHHHHHhc
Q 004166 301 SHDTVDRLLPGSVQARGDNLFNVLKAFSN 329 (770)
Q Consensus 301 ~~Dt~d~id~~~lq~~g~~~l~l~~~la~ 329 (770)
++ +.++.+.+.++.+.+.++++++..
T Consensus 323 ~~---e~~~~~D~~~~~~Ll~~~i~~~~~ 348 (355)
T COG1363 323 PV---EVAHLDDLEATVKLLVAYLESLDR 348 (355)
T ss_pred cc---eeecHHHHHHHHHHHHHHHHhcch
Confidence 65 455688888888888888776643
No 61
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.98 E-value=5.1e-09 Score=120.38 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCCCC---------CChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceecccccccc
Q 004166 54 ARAIQHVRVLADEIGDRQE---------GRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLG 124 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~---------gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~ 124 (770)
+.+.+.|++|. +|.+-.. ...+.+++++|+.+.++++| ++++..
T Consensus 13 ~~~~~~l~~lv-~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G------~~~~~~-------------------- 65 (466)
T TIGR01886 13 DALLEDLEELL-RIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDG------FTTKNF-------------------- 65 (466)
T ss_pred HHHHHHHHHHh-CCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCC------CeEEEe--------------------
Confidence 45667777777 4443210 01344579999999999998 444321
Q ss_pred ccccceEEEEEeCCCCCCCCCeEEEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCC
Q 004166 125 YRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWI 185 (770)
Q Consensus 125 y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~ 185 (770)
.|+++++.+.+ +++.|++++|+|+||. ++|+.||+.|++++|.+++.|++.+.+
T Consensus 66 ----~~~~~~~~~~~---~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~ 138 (466)
T TIGR01886 66 ----DNYAGHVEYGA---GDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLP 138 (466)
T ss_pred ----cCCceeEEecC---CCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCC
Confidence 12223332211 2467999999999974 789999999999999999999998888
Q ss_pred CCCCEEEEEeCcccCCccChHHHHhhcc
Q 004166 186 PPRPIIFLFNGAEELFMLGAHGFMKAHK 213 (770)
Q Consensus 186 ~~~~I~flf~~~EE~gl~GS~~fi~~~~ 213 (770)
++++|+|++.++||.|..|++.+++++.
T Consensus 139 ~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 139 PSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred CCCCEEEEEECccccCcccHHHHHhcCc
Confidence 8999999999999999999999998654
No 62
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.98 E-value=8.3e-09 Score=114.75 Aligned_cols=135 Identities=19% Similarity=0.175 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeC
Q 004166 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (770)
Q Consensus 58 ~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g 137 (770)
+.+++|. ++ +..|.+++++++||.++|+++| +++++.. .+ +..|++++. |
T Consensus 3 ~~l~~lv-~i---ps~s~~e~~~~~~i~~~l~~~G------~~~~~~~--~~-----------------~~~~~~~~~-g 52 (370)
T TIGR01246 3 ELAKELI-SR---PSVTPNDAGCQDIIAERLEKLG------FEIEWMH--FG-----------------DTKNLWATR-G 52 (370)
T ss_pred HHHHHHh-cC---CCCCcchHHHHHHHHHHHHHCC------CEEEEEe--cC-----------------CCceEEEEe-c
Confidence 4566666 33 3345566789999999999998 4444321 11 125899985 3
Q ss_pred CCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeC
Q 004166 138 TDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNG 196 (770)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~ 196 (770)
. ..+.|++++|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+|..
T Consensus 53 ~----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~ 128 (370)
T TIGR01246 53 T----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITS 128 (370)
T ss_pred C----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEe
Confidence 2 2367999999999974 56889999999999999999988776778899999999
Q ss_pred cccCCc-cChHHHHhhccc-cCceeEEEEecc
Q 004166 197 AEELFM-LGAHGFMKAHKW-RDSVGAVINVEA 226 (770)
Q Consensus 197 ~EE~gl-~GS~~fi~~~~~-~~~i~a~INlD~ 226 (770)
+||.+. .|++.+++.... ..+.++++..|.
T Consensus 129 dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 129 DEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred ccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 999764 699988763311 124566676564
No 63
>PRK13004 peptidase; Reviewed
Probab=98.97 E-value=9.7e-09 Score=115.58 Aligned_cols=135 Identities=20% Similarity=0.137 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeE-EEEEeeecCcccceeccccccccccccceEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRI-EIEENVVNGSFNMIFLGHSISLGYRNHTNIV 132 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~v-ev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi 132 (770)
+++.+.+++|. ++ +..|.+++++++||.++++++|. ++ +++ ...|++
T Consensus 15 ~~~~~~l~~lv-~i---ps~s~~e~~~a~~l~~~l~~~G~------~~~~~~----------------------~~~n~~ 62 (399)
T PRK13004 15 ADMTRFLRDLI-RI---PSESGDEKRVVKRIKEEMEKVGF------DKVEID----------------------PMGNVL 62 (399)
T ss_pred HHHHHHHHHHh-cC---CCCCCchHHHHHHHHHHHHHcCC------cEEEEc----------------------CCCeEE
Confidence 46777777777 43 33445566899999999999983 21 111 124899
Q ss_pred EEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEE
Q 004166 133 MRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPII 191 (770)
Q Consensus 133 ~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~ 191 (770)
+++.|. ++.|++++|+|+|+. ++|+.||++|++++|.+++.|++.+.+++.+|.
T Consensus 63 a~~~~~-----~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~ 137 (399)
T PRK13004 63 GYIGHG-----KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLY 137 (399)
T ss_pred EEECCC-----CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEE
Confidence 988652 267999999999984 458999999999999999999988877889999
Q ss_pred EEEeCcccC-CccChHHHHhhccccCceeEEEEeccC
Q 004166 192 FLFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEAS 227 (770)
Q Consensus 192 flf~~~EE~-gl~GS~~fi~~~~~~~~i~a~INlD~~ 227 (770)
|+|..+||. +..|++.++++... +...++..|..
T Consensus 138 ~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~~ 172 (399)
T PRK13004 138 VTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEPT 172 (399)
T ss_pred EEEEcccccCcchhHHHHHHhcCC--CCCEEEEccCC
Confidence 999999995 45677777764322 34666766654
No 64
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=98.95 E-value=3.3e-09 Score=105.91 Aligned_cols=166 Identities=22% Similarity=0.178 Sum_probs=109.6
Q ss_pred EEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc-ChHH
Q 004166 148 LMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML-GAHG 207 (770)
Q Consensus 148 ll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~-GS~~ 207 (770)
++.+|+|+|+. ++|+.|++.|+++++.+++.+++.+.+++++|+|+++.+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68899999991 789999999999999999999988889999999999999999998 9999
Q ss_pred HHhhc-cccCceeEEEEeccCCCCCCceEEeeCCCCchhhHhhhhccCccccccccccCCCCCCCCchHHHhcc-CCCCc
Q 004166 208 FMKAH-KWRDSVGAVINVEASGTGGLDLVCQSGPSSWPSSVYAQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQD-YGDIP 285 (770)
Q Consensus 208 fi~~~-~~~~~i~a~INlD~~G~gg~~~lfq~gp~~~~~~~y~~~~~~p~~~~l~~e~f~~ips~tD~~~F~~~-~~gIP 285 (770)
++++. ....+....+..|..+.+... ...++.+.+...+.......... .....+..||...|.+. ..++|
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~tD~~~~~~~~~~~~~ 153 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEPP---EPVASGGGTDAGFLAEVKGLGIP 153 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSEE---EEEEESSSSTHHHHHCHHHTTEE
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhccc---cccceeccccchhhhhhhccccc
Confidence 99873 223446777776655433211 11222122222222111111000 01234678999999730 25777
Q ss_pred EEEEEEecCCccCcCcCcccCCCCHHHHHHHHHHHHHHHH
Q 004166 286 GLDIIFLIGGYYYHTSHDTVDRLLPGSVQARGDNLFNVLK 325 (770)
Q Consensus 286 gld~a~~~~~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~ 325 (770)
.+.+.... ...|++...+ +.+.+....+.+.++++
T Consensus 154 ~i~~G~~~--~~~H~~~E~i---~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 154 AIGFGPGG--SNAHTPDEYI---DIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEESCE--ESTTSTT-EE---EHHHHHHHHHHHHHHHH
T ss_pred eeeeCCCC--CCCCCCCcEe---cHHHHHHHHHHHHHHHh
Confidence 77654333 5788877554 47777777777776664
No 65
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.94 E-value=8.6e-09 Score=113.23 Aligned_cols=124 Identities=21% Similarity=0.191 Sum_probs=93.5
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCC
Q 004166 60 VRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTD 139 (770)
Q Consensus 60 l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~ 139 (770)
+++|. ++.. .|.+++++++||.++|+++| ++++.+ ...|+++.. |.
T Consensus 3 l~~lv-~i~s---~s~~e~~~~~~l~~~l~~~g------~~~~~~----------------------~~~~~~~~~-~~- 48 (336)
T TIGR01902 3 LKDLL-EIYS---PSGKEANAAKFLEEISKDLG------LKLIID----------------------DAGNFILGK-GD- 48 (336)
T ss_pred HHHHh-cCCC---CCcchHHHHHHHHHHHHHcC------CEEEEC----------------------CCCcEEEEe-CC-
Confidence 56666 4333 23445689999999999998 333221 124777765 32
Q ss_pred CCCCCCeEEEeecCCCCCC------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHH
Q 004166 140 SQDTDPSVLMNGHFDGPLS------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 207 (770)
Q Consensus 140 ~~~~~~~Vll~aH~Dsv~~------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~ 207 (770)
+.+.|++++|+|+||. ++|+.|+++|+|++|++++.+++. ..+|.|+++.+||.|..|++.
T Consensus 49 ---~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~ 121 (336)
T TIGR01902 49 ---GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGARE 121 (336)
T ss_pred ---CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHH
Confidence 2367999999999973 689999999999999999999764 358999999999999999999
Q ss_pred HHhhccccCceeEEEEeccCC
Q 004166 208 FMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 208 fi~~~~~~~~i~a~INlD~~G 228 (770)
+++++. . .++|..|..+
T Consensus 122 ~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 122 VIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred HHhhcC--C--CEEEEecCCC
Confidence 998653 2 2677778654
No 66
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.92 E-value=1.4e-08 Score=113.53 Aligned_cols=135 Identities=20% Similarity=0.137 Sum_probs=97.3
Q ss_pred HHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCC
Q 004166 60 VRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTD 139 (770)
Q Consensus 60 l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~ 139 (770)
+++|. +|.+ -|.+++++++||.++|++++.. .++++.. ..||++++.+.
T Consensus 2 l~~Lv-~ipS---~s~~e~~~~~~i~~~l~~~g~~-----~~~~~~~---------------------~~nvva~~~~~- 50 (373)
T TIGR01900 2 LQQIM-DIFS---PSDHEGPIADEIEAALNNLELE-----GLEVFRF---------------------GDNVLARTDFG- 50 (373)
T ss_pred hHHHh-CCCC---CCchHHHHHHHHHHHHhhcccc-----CceEEEE---------------------CCEEEEecCCC-
Confidence 45666 4333 3445558999999999987621 1233221 13999997542
Q ss_pred CCCCCCeEEEeecCCCCCC-------------------------------CCCCCCChhHHHHHHHHHHHHHh--cCCCC
Q 004166 140 SQDTDPSVLMNGHFDGPLS-------------------------------SPGAGDCGSCVASMLELARLTID--SGWIP 186 (770)
Q Consensus 140 ~~~~~~~Vll~aH~Dsv~~-------------------------------s~GA~D~~sgva~~LE~ar~l~~--~~~~~ 186 (770)
+.+.|++++|+|+||. ++|+.|+++|+|++|++++.+.+ .+..+
T Consensus 51 ---~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~ 127 (373)
T TIGR01900 51 ---KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETEL 127 (373)
T ss_pred ---CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCC
Confidence 2356999999999952 57899999999999999999953 34567
Q ss_pred CCCEEEEEeCcccCCc--cChHHHHhhccccCceeEEEEeccCC
Q 004166 187 PRPIIFLFNGAEELFM--LGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 187 ~~~I~flf~~~EE~gl--~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
+.+|.|+|.++||.+. .|+..++++++...+.+++|..|..+
T Consensus 128 ~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept~ 171 (373)
T TIGR01900 128 KHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPTG 171 (373)
T ss_pred CCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCCC
Confidence 8899999999999853 69999988654323567788877543
No 67
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.91 E-value=7.1e-08 Score=106.46 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCC--------CCCc
Q 004166 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGT--------GGLD 233 (770)
Q Consensus 162 A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~--------gg~~ 233 (770)
+.||++||+++++++|.+++.+.+++.++.|+|+..||.| .|+.. ....++..+|.+|.+.. .|+.
T Consensus 181 ~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~Gp~ 254 (343)
T TIGR03106 181 HLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHGVT 254 (343)
T ss_pred ecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCCce
Confidence 4899999999999999999877778899999999999999 56321 11223334466674432 1222
Q ss_pred e-EEeeCCC--CchhhHhh---hhccCccccccccccCCCCCCCCchHHHhccCCCCcEEEEEEecCCccCcCcCcccCC
Q 004166 234 L-VCQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTSHDTVDR 307 (770)
Q Consensus 234 ~-lfq~gp~--~~~~~~y~---~~~~~p~~~~l~~e~f~~ips~tD~~~F~~~~~gIPgld~a~~~~~~~YHT~~Dt~d~ 307 (770)
+ ....++. +.+.+... +...-|+- .+++. ..+||-..+...-.|+|...++.- -. +=|| .+.
T Consensus 255 i~~~d~~~~~~~~l~~~l~~~A~~~~Ip~Q----~~~~~--~~gtDa~~~~~~~~Gi~t~~i~iP-~R-y~Hs----~e~ 322 (343)
T TIGR03106 255 IAMADSSGPFDYHLTRKLIRLCQDHGIPHR----RDVFR--YYRSDAASAVEAGHDIRTALVTFG-LD-ASHG----YER 322 (343)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCcE----EEecC--CCCChHHHHHHcCCCCCEEEeecc-cc-chhh----hhh
Confidence 2 1211211 22222111 11122221 12221 135665554322269998877632 12 3577 566
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004166 308 LLPGSVQARGDNLFNVL 324 (770)
Q Consensus 308 id~~~lq~~g~~~l~l~ 324 (770)
++.+.++++.+.+.+++
T Consensus 323 ~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 323 THIDALEALANLLVAYA 339 (343)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 67888877777665554
No 68
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.87 E-value=2.2e-08 Score=114.61 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCCCC----CC-----ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccc
Q 004166 55 RAIQHVRVLADEIGDRQ----EG-----RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGY 125 (770)
Q Consensus 55 ra~~~l~~L~~~ig~R~----~g-----S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y 125 (770)
.+.+.+++|. +|.+-. .+ .++..++.+|+.+++++.| ++++.
T Consensus 3 ~~i~ll~~Lv-~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~~---------------------- 53 (447)
T TIGR01887 3 EILEDLKELI-RIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDG------FTTEN---------------------- 53 (447)
T ss_pred HHHHHHHHhc-CcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcC------ceEEE----------------------
Confidence 4667777777 444311 01 1233578999999999988 33331
Q ss_pred cccceEEEEEeCCCCCCCCCeEEEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 004166 126 RNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIP 186 (770)
Q Consensus 126 ~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~ 186 (770)
..|++++.+..+ ..+.|++++|+|+||. ++|+.|++.|+++++++++.|++.+.++
T Consensus 54 --~~~~~~~~~~~~---~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~ 128 (447)
T TIGR01887 54 --VDNYAGYAEYGQ---GEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKL 128 (447)
T ss_pred --ecCceEEEEeCC---CCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCC
Confidence 113333332211 2357999999999973 6899999999999999999999888888
Q ss_pred CCCEEEEEeCcccCCccChHHHHhhc
Q 004166 187 PRPIIFLFNGAEELFMLGAHGFMKAH 212 (770)
Q Consensus 187 ~~~I~flf~~~EE~gl~GS~~fi~~~ 212 (770)
+++|.|+++.+||.|..|+..++++.
T Consensus 129 ~~~i~~~~~~dEE~g~~g~~~~l~~~ 154 (447)
T TIGR01887 129 KKKIRFIFGTDEETGWACIDYYFEHE 154 (447)
T ss_pred CCcEEEEEECCcccCcHhHHHHHHhc
Confidence 99999999999999999999998743
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.85 E-value=1.7e-07 Score=103.56 Aligned_cols=146 Identities=23% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCCC-----------
Q 004166 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 230 (770)
Q Consensus 162 A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~g----------- 230 (770)
|-||..||++++|++|.+++. +++.++.++|+..||.|+.||+.-..+. +.+.+|.+|.+-.+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~i----~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTKF----NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhhC----CCCEEEEEecCCcCCCCCCCccccC
Confidence 789999999999999999864 4778999999999999999999654422 33467777865332
Q ss_pred -CCce-EEeeCCC--CchhhHhh---hhccCccccccccccCCCCCCCCchH--HHhccCCCCcEEEEEEecCCccCcCc
Q 004166 231 -GLDL-VCQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIPGDTDYR--IFSQDYGDIPGLDIIFLIGGYYYHTS 301 (770)
Q Consensus 231 -g~~~-lfq~gp~--~~~~~~y~---~~~~~p~~~~l~~e~f~~ips~tD~~--~F~~~~~gIPgld~a~~~~~~~YHT~ 301 (770)
|+.+ ....++. +.+.+... +...-|+-. . ....+||-. .+.+ .|+|.+.++-- .. +-||+
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-----~--~~~gGtDa~~~~~~~--~Gvpt~~i~ip-~R-y~Hs~ 318 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-----Y--VAKGGTDAGAAHLKN--SGVPSTTIGVC-AR-YIHSH 318 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEE-----e--cCCCCchHHHHHHhC--CCCcEEEEccC-cc-cccCh
Confidence 2222 1112221 12221111 111122111 0 112356666 5654 79999887632 12 45887
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHHHH
Q 004166 302 HDTVDRLLPGSVQARGDNLFNVLKAF 327 (770)
Q Consensus 302 ~Dt~d~id~~~lq~~g~~~l~l~~~l 327 (770)
... ++.+.++++.+.+.++++.+
T Consensus 319 ~e~---i~~~D~~~~~~Ll~~~i~~l 341 (350)
T TIGR03107 319 QTL---YSIDDFLAAQAFLQAIVKKL 341 (350)
T ss_pred hhe---eeHHHHHHHHHHHHHHHHhc
Confidence 655 46788888888888887765
No 70
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.82 E-value=6.1e-08 Score=107.75 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeC
Q 004166 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (770)
Q Consensus 58 ~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g 137 (770)
+.+++|. ++ |.+ |.+++++++||.++|++.| ++++.+ .. ...|++++++|
T Consensus 3 ~~~~~L~-~i-ps~--s~~E~~~a~~l~~~l~~~g------~~~~~~--~~------------------~~~~vva~~~~ 52 (363)
T TIGR01891 3 DIRRHLH-EH-PEL--SFEEFKTSSLIAEALESLG------IEVRRG--VG------------------GATGVVATIGG 52 (363)
T ss_pred HHHHHHh-cC-CCC--CCchHHHHHHHHHHHHHcC------CceEec--CC------------------CCcEEEEEEeC
Confidence 4567777 33 333 3455689999999999998 333321 00 12699999976
Q ss_pred CCCCCCCCeEEEeecCCCCCC-----------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccC
Q 004166 138 TDSQDTDPSVLMNGHFDGPLS-----------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEEL 200 (770)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~-----------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~ 200 (770)
++ +.+.|++++|+|+||. ++|+ .+++|+++.+++.|++.+.+++++|.|+|+.+||.
T Consensus 53 ~~---~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~ 126 (363)
T TIGR01891 53 GK---PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEG 126 (363)
T ss_pred CC---CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcC
Confidence 43 2367999999999983 2233 36789999999999876666788999999999998
Q ss_pred CccChHHHHhhccccCceeEEEEeccCC
Q 004166 201 FMLGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 201 gl~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
+ .|++.++++. +.++++++|+.|...
T Consensus 127 ~-~G~~~~~~~~-~~~~~d~~i~~e~~~ 152 (363)
T TIGR01891 127 G-GGATKMIEDG-VLDDVDAILGLHPDP 152 (363)
T ss_pred c-chHHHHHHCC-CCCCcCEEEEECCCC
Confidence 6 7999998754 345677888887643
No 71
>PRK09961 exoaminopeptidase; Provisional
Probab=98.80 E-value=2.5e-07 Score=102.27 Aligned_cols=150 Identities=15% Similarity=0.034 Sum_probs=91.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCCCCCce------
Q 004166 161 GAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTGGLDL------ 234 (770)
Q Consensus 161 GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~gg~~~------ 234 (770)
.|-||..||++++|++|.+++. ++..+++|+|+..||.|+.||+.-.... +...+|.+|.+-..+..-
T Consensus 163 kalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~i----~pd~~I~vDv~~~~d~~~~~~~~~ 236 (344)
T PRK09961 163 KAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRAV----SPDVAIVLDTACWAKNFDYGAANH 236 (344)
T ss_pred eechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhcc----CCCEEEEEeccCCCCCCCCCCCcc
Confidence 4789999999999999999754 4679999999999999999999776532 345578888663322100
Q ss_pred -EEeeCCC-----------CchhhHhhhhc---cCccccccccccCCCCCCCCchHHHhccCCCCcEEEEEEecCCccCc
Q 004166 235 -VCQSGPS-----------SWPSSVYAQSA---IYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYH 299 (770)
Q Consensus 235 -lfq~gp~-----------~~~~~~y~~~~---~~p~~~~l~~e~f~~ips~tD~~~F~~~~~gIPgld~a~~~~~~~YH 299 (770)
....||. +.+.+...+.+ .-|+- .+. ....+||-..|.....|+|.+.+..- .. +=|
T Consensus 237 ~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q----~~~--~~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~H 308 (344)
T PRK09961 237 RQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQ----ADM--FSNGGTDGGAVHLTGTGVPTVVMGPA-TR-HGH 308 (344)
T ss_pred cccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcE----EEe--cCCCcchHHHHHHhCCCCCEEEechh-hh-ccc
Confidence 0011111 11111111111 11110 001 11246888876432268999988653 22 348
Q ss_pred CcCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004166 300 TSHDTVDRLLPGSVQARGDNLFNVLKAF 327 (770)
Q Consensus 300 T~~Dt~d~id~~~lq~~g~~~l~l~~~l 327 (770)
|+.. .++.+.+.++.+.+.++++.+
T Consensus 309 s~~E---~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 309 CAAS---IADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred Chhh---eEEHHHHHHHHHHHHHHHHHc
Confidence 7764 455777888888777777554
No 72
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.79 E-value=8.8e-08 Score=107.69 Aligned_cols=135 Identities=21% Similarity=0.190 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~ 133 (770)
+++.+.+++|. ++.. -|..++++.+||.++++++|.+ .++++ ...|+++
T Consensus 13 ~~~~~~~~~lv-~i~s---~s~~e~~~~~~l~~~l~~~G~~-----~~~~~----------------------~~~n~~~ 61 (395)
T TIGR03320 13 GDMIRFLRDLV-AIPS---ESGDEKRVAERIKEEMEKLGFD-----KVEID----------------------PMGNVLG 61 (395)
T ss_pred HHHHHHHHHHH-cCCC---CCCchHHHHHHHHHHHHHhCCc-----EEEEC----------------------CCCCEEE
Confidence 56777788887 4332 3344568999999999999831 11211 1248888
Q ss_pred EEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 134 ~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
++ |.+ ++.|++.+|+|+||. ++|+.|++.|+|++|.+++.|++.+..++.++.|
T Consensus 62 ~~-g~~----~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~ 136 (395)
T TIGR03320 62 YI-GHG----PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLV 136 (395)
T ss_pred Ee-CCC----CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEE
Confidence 87 432 367999999999973 5899999999999999999999887677789999
Q ss_pred EEeCcccCC-ccChHHHHhhccccCceeEEEEecc
Q 004166 193 LFNGAEELF-MLGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 193 lf~~~EE~g-l~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
.+..+||.+ ..|++.++.+.. .+.+++|..|.
T Consensus 137 ~~~~dEE~~~g~~~~~~~~~~~--~~~d~~iv~ep 169 (395)
T TIGR03320 137 TGTVQEEDCDGLCWQYIIEEDG--IKPEFVVITEP 169 (395)
T ss_pred EecccccccCchHHHHHHHhcC--CCCCEEEEcCC
Confidence 999999963 234455555432 23556666664
No 73
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.79 E-value=1e-07 Score=107.10 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEE
Q 004166 54 ARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVM 133 (770)
Q Consensus 54 era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~ 133 (770)
+++.+.+++|. ++. ..|.++.++.+||.++++++|.+ .++++ ...|+++
T Consensus 13 ~~~~~~l~~Lv-~ip---s~s~~e~~~~~~l~~~l~~~g~~-----~~~~~----------------------~~~~v~~ 61 (395)
T TIGR03526 13 GDMIRFLRDLV-AIP---SESGDEGRVALRIKQEMEKLGFD-----KVEID----------------------PMGNVLG 61 (395)
T ss_pred HHHHHHHHHHh-cCC---CCCCchHHHHHHHHHHHHHcCCc-----eEEEc----------------------CCCcEEE
Confidence 45667777777 432 23444558999999999998831 01211 1248899
Q ss_pred EEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 134 RISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 134 ~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
++ |.+ ++.|++.+|+|+||. ++|+.|++.|++++|.+++.+++.+..++.++.|
T Consensus 62 ~~-g~~----~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~ 136 (395)
T TIGR03526 62 YI-GHG----PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLV 136 (395)
T ss_pred Ee-CCC----CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEE
Confidence 88 432 357999999999983 5899999999999999999999887667789999
Q ss_pred EEeCcccC-CccChHHHHhhccccCceeEEEEecc
Q 004166 193 LFNGAEEL-FMLGAHGFMKAHKWRDSVGAVINVEA 226 (770)
Q Consensus 193 lf~~~EE~-gl~GS~~fi~~~~~~~~i~a~INlD~ 226 (770)
++..+||. +..|++.++++... +..++|..|.
T Consensus 137 ~~~~dEE~~~g~~~~~~~~~~~~--~~d~~i~~ep 169 (395)
T TIGR03526 137 TGTVQEEDCDGLCWQYIIEEDKI--KPEFVVITEP 169 (395)
T ss_pred EEecccccCCcHhHHHHHhccCC--CCCEEEecCC
Confidence 99999993 44566677754332 3456666664
No 74
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.78 E-value=7.5e-08 Score=107.32 Aligned_cols=132 Identities=22% Similarity=0.284 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhcCCCC-CCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceE
Q 004166 53 EARAIQHVRVLADEIGDRQ-EGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNI 131 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~-~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NV 131 (770)
.+++.+.+++|. +|.+.. .++.+++++.+|+.++++ | +++++++. + .+..|+
T Consensus 5 ~~~~~~~l~~Lv-~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~~---~---------------~~~~nl 57 (364)
T PRK08737 5 LESTLDHLQALV-SFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVIDH---G---------------AGAVSL 57 (364)
T ss_pred HHHHHHHHHHHh-CCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEecC---C---------------CCceEE
Confidence 456889999998 666532 222234688999999996 4 34444321 1 123588
Q ss_pred EEEEeCCCCCCCCCeEEEeecCCCCCC-------------------CCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEE
Q 004166 132 VMRISSTDSQDTDPSVLMNGHFDGPLS-------------------SPGAGDCGSCVASMLELARLTIDSGWIPPRPIIF 192 (770)
Q Consensus 132 i~~i~g~~~~~~~~~Vll~aH~Dsv~~-------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~f 192 (770)
+++ .|+ +.|++++|+|+||. ++|+.|+++|+|+||.+++. ++.+|.|
T Consensus 58 i~~-~g~------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~ 123 (364)
T PRK08737 58 YAV-RGT------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAF 123 (364)
T ss_pred EEE-cCC------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEE
Confidence 886 332 35999999999983 56999999999999999873 3568999
Q ss_pred EEeCcccCCc-cChHHHHhhccccCceeEEEEeccCC
Q 004166 193 LFNGAEELFM-LGAHGFMKAHKWRDSVGAVINVEASG 228 (770)
Q Consensus 193 lf~~~EE~gl-~GS~~fi~~~~~~~~i~a~INlD~~G 228 (770)
+|+.+||.|. .|++.++++.. +..++|..|..+
T Consensus 124 ~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ept~ 157 (364)
T PRK08737 124 LFSSDEEANDPRCVAAFLARGI---PYEAVLVAEPTM 157 (364)
T ss_pred EEEcccccCchhhHHHHHHhCC---CCCEEEEcCCCC
Confidence 9999999887 68889987542 356777766543
No 75
>PRK09864 putative peptidase; Provisional
Probab=98.73 E-value=5.9e-07 Score=99.28 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=88.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccCCCC-----------
Q 004166 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEASGTG----------- 230 (770)
Q Consensus 162 A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~G~g----------- 230 (770)
|-||..||++++|++|.+++ ++.+++|+|+..||.|+.||+.-..+. +-..+|.+|.+-++
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i----~PDiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHI----KPDVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcC----CCCEEEEEecccCCCCCCCcccccc
Confidence 78999999999999999964 779999999999999999999766533 23447777765322
Q ss_pred -----CCce-EEeeCCC--CchhhHhh---hhccCccccccccccCCCCC-CCCchHHHhccCCCCcEEEEEEecCCccC
Q 004166 231 -----GLDL-VCQSGPS--SWPSSVYA---QSAIYPMAHSAAQDVFPVIP-GDTDYRIFSQDYGDIPGLDIIFLIGGYYY 298 (770)
Q Consensus 231 -----g~~~-lfq~gp~--~~~~~~y~---~~~~~p~~~~l~~e~f~~ip-s~tD~~~F~~~~~gIPgld~a~~~~~~~Y 298 (770)
|+.+ .+..++. +.+.+... +...-|+- .+ ..+ ++||-..+...-.|+|...++. ... +-
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q----~~---~~~~ggTDa~~i~~~~~Gvpt~~isi-P~R-Y~ 315 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQ----FS---TMKTGATDGGRYNVMGGGRPVVALCL-PTR-YL 315 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCce----EE---EcCCCCchHHHHHHhCCCCcEEEEee-ccC-cC
Confidence 1111 1111211 11111111 11111210 01 112 3677665532227999888763 223 46
Q ss_pred cCcCcccCCCCHHHHHHHHHHHHHHHHHH
Q 004166 299 HTSHDTVDRLLPGSVQARGDNLFNVLKAF 327 (770)
Q Consensus 299 HT~~Dt~d~id~~~lq~~g~~~l~l~~~l 327 (770)
||+.... +.+.++++.+.+.++++.+
T Consensus 316 Hs~~e~~---~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 316 HANSGMI---SKADYDALLTLIRDFLTTL 341 (356)
T ss_pred CCcceEe---EHHHHHHHHHHHHHHHHhc
Confidence 8887654 5677777778777777655
No 76
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.66 E-value=2.7e-07 Score=96.89 Aligned_cols=195 Identities=17% Similarity=0.191 Sum_probs=134.7
Q ss_pred ceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHH
Q 004166 98 KFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELAR 177 (770)
Q Consensus 98 ~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar 177 (770)
+++|.+|....+|+- .|.+ ..++|+ .+..|++++|..|.. -|+||-||+|.+.-+++
T Consensus 152 dyeVvIDae~~dG~L-----------~yge-----fi~rg~----~~~eiLlst~lCHPS---maNdn~SG~all~~lak 208 (435)
T COG4310 152 DYEVVIDAEHEDGSL-----------DYGE-----FIHRGT----SKDEILLSTYLCHPS---MANDNLSGLALLTFLAK 208 (435)
T ss_pred CeEEEEecccccCce-----------ehhh-----eeccCC----ccceeeeeecccChh---hccCccchHHHHHHHHH
Confidence 477878776666641 1211 123554 245699999999954 69999999999999999
Q ss_pred HHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccc-cCceeEEEEeccCCCCCCceEEeeCCCCchhh-HhhhhccCc
Q 004166 178 LTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKW-RDSVGAVINVEASGTGGLDLVCQSGPSSWPSS-VYAQSAIYP 255 (770)
Q Consensus 178 ~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~-~~~i~a~INlD~~G~gg~~~lfq~gp~~~~~~-~y~~~~~~p 255 (770)
.|+.. +.+.+.+|+|-. +..||-.|..+|.. .++++.-+.+-+.|.||..-..++-.+.-+++ +-.+...+-
T Consensus 209 ~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~GlVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~ 282 (435)
T COG4310 209 ALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHGLVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHC 282 (435)
T ss_pred HHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcceEEEEecCCCCccceeccccchHHHHHHHHHHhcC
Confidence 99865 578899999986 46899999998853 57999999999999876544444432222222 111111111
Q ss_pred cccccccccCCCCCCCCchHHHhccCCCCcEEEEEE------ecC-CccCcCcCcccCCCCHHHHHHHHHHHHHHHHHHh
Q 004166 256 MAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIF------LIG-GYYYHTSHDTVDRLLPGSVQARGDNLFNVLKAFS 328 (770)
Q Consensus 256 ~~~~l~~e~f~~ips~tD~~~F~~~~~gIPgld~a~------~~~-~~~YHT~~Dt~d~id~~~lq~~g~~~l~l~~~la 328 (770)
++ ..+++.++|-++|-|+|.. ||+++.- ..+ -.-|||+.|+.+.+.|+.|..--+.+++++..+.
T Consensus 283 -~s--~~~~~dF~p~G~DERQf~s-----Pg~NLpvg~~~Rs~yG~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE 354 (435)
T COG4310 283 -GS--NFKAADFLPYGSDERQFCS-----PGFNLPVGGLQRSRYGDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLE 354 (435)
T ss_pred -Cc--CceeeecccCCCchhhccC-----CCcCCchhhhhHhhcCCCccccCccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 11 1123457899999999974 5554421 112 2379999999999999988888888888888876
Q ss_pred c
Q 004166 329 N 329 (770)
Q Consensus 329 ~ 329 (770)
+
T Consensus 355 ~ 355 (435)
T COG4310 355 I 355 (435)
T ss_pred h
Confidence 4
No 77
>PLN02693 IAA-amino acid hydrolase
Probab=98.63 E-value=5.3e-07 Score=102.97 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeC
Q 004166 58 QHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISS 137 (770)
Q Consensus 58 ~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g 137 (770)
+.+.++.+.+...+.-|-++.++.+||.++|+++| ++++.. . ...|+++++.+
T Consensus 47 ~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G------~~~~~~---~------------------~~~~via~~g~ 99 (437)
T PLN02693 47 DWMVRIRRKIHENPELGYEEFETSKLIRSELDLIG------IKYRYP---V------------------AITGIIGYIGT 99 (437)
T ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCC------CeeEec---C------------------CCcEEEEEECC
Confidence 33455555566667777778899999999999998 333321 0 13699999842
Q ss_pred CCCCCCCCeEEEeecCCCCCCC-------------CC-CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc
Q 004166 138 TDSQDTDPSVLMNGHFDGPLSS-------------PG-AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML 203 (770)
Q Consensus 138 ~~~~~~~~~Vll~aH~Dsv~~s-------------~G-A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~ 203 (770)
+ +.+.|++.+|+|+||.. .+ +.|.++++|+++.+++.|++.+.+.+.+|+|+|..+|| +..
T Consensus 100 -~---~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE-~~~ 174 (437)
T PLN02693 100 -G---EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEE-GLS 174 (437)
T ss_pred -C---CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEccc-chh
Confidence 2 24689999999999842 12 77888999999999999988765667899999999999 557
Q ss_pred ChHHHHhhc
Q 004166 204 GAHGFMKAH 212 (770)
Q Consensus 204 GS~~fi~~~ 212 (770)
|++.++++.
T Consensus 175 Ga~~~i~~g 183 (437)
T PLN02693 175 GAKKMREEG 183 (437)
T ss_pred hHHHHHHCC
Confidence 999998754
No 78
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.60 E-value=3.5e-07 Score=100.17 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=118.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhccc-ccCCceeEEEEEeeecCcccceeccccccccccccc
Q 004166 51 FSEARAIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKE-RAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHT 129 (770)
Q Consensus 51 Fs~era~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~-~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~ 129 (770)
.|.||+++..-.|++ . +-..||+++..-+++|...+.++.. +.+|+ .+..| ++.+.-....
T Consensus 5 is~e~v~~lt~~LV~-~-~SvtgT~GE~a~ad~l~~vL~~~pYFqehpe---d~~~~-------------pi~nDpygR~ 66 (553)
T COG4187 5 ISSERVRALTLSLVS-W-PSVTGTPGEGAFADRLLGVLGELPYFQEHPE---DLWLQ-------------PIHNDPYGRR 66 (553)
T ss_pred hhHHHHHHHHHHHee-c-cccCCCcccccHHHHHHHHHhcCchhhhChH---hhccc-------------CCCCCccccc
Confidence 467899999999983 3 4578999999999999999998763 22221 11111 1111112347
Q ss_pred eEEEEEeCCCCCCCCCeEEEeecCCCCCC------------------------------------------CCCCCCChh
Q 004166 130 NIVMRISSTDSQDTDPSVLMNGHFDGPLS------------------------------------------SPGAGDCGS 167 (770)
Q Consensus 130 NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~------------------------------------------s~GA~D~~s 167 (770)
||.+-++|. ++++.|++.+|+|+|.. |+|+.|+++
T Consensus 67 nv~AlVrg~---~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKs 143 (553)
T COG4187 67 NVFALVRGG---TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKS 143 (553)
T ss_pred eeEEEEecC---CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhh
Confidence 999999994 35688999999999963 789999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhcc-----ccCceeEEEEeccCCC
Q 004166 168 CVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHK-----WRDSVGAVINVEASGT 229 (770)
Q Consensus 168 gva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~-----~~~~i~a~INlD~~G~ 229 (770)
|.|+-|..++.+.+. ...+.+|.|+.+.+||..-.|.+.-+...+ ..-...++||+|..+.
T Consensus 144 Glav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 144 GLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 999999999999876 467889999999999988777776554331 2356889999998753
No 79
>PLN02280 IAA-amino acid hydrolase
Probab=98.60 E-value=1e-06 Score=101.51 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEE
Q 004166 56 AIQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRI 135 (770)
Q Consensus 56 a~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i 135 (770)
..+.+++|.+.+...+.-+.++.++.+||.++|++.| ++++... ...|+++++
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G------~~~~~~~---------------------~~~~vva~~ 147 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMG------IMYRYPL---------------------AKTGIRAWI 147 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCC------CeEEecC---------------------CCCEEEEEE
Confidence 3455556655544445455666799999999999988 3433210 135999998
Q ss_pred eCCCCCCCCCeEEEeecCCCCCCCC-----------C---CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 004166 136 SSTDSQDTDPSVLMNGHFDGPLSSP-----------G---AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (770)
Q Consensus 136 ~g~~~~~~~~~Vll~aH~Dsv~~s~-----------G---A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g 201 (770)
|++ +++.|++.+|+|+||... | +.|...++|+++.+++.|++.+.+++.+|+|+|..+||.|
T Consensus 148 -g~~---~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g 223 (478)
T PLN02280 148 -GTG---GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG 223 (478)
T ss_pred -CCC---CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEeccccccc
Confidence 532 237899999999998421 1 2334559999999999998776677889999999999997
Q ss_pred ccChHHHHhhccccCceeEEEE
Q 004166 202 MLGAHGFMKAHKWRDSVGAVIN 223 (770)
Q Consensus 202 l~GS~~fi~~~~~~~~i~a~IN 223 (770)
.|++.++++- ..+++++++-
T Consensus 224 -~Ga~~li~~g-~~~~~d~~~~ 243 (478)
T PLN02280 224 -NGAKRMIGDG-ALDDVEAIFA 243 (478)
T ss_pred -chHHHHHHCC-CCcCCCEEEE
Confidence 4999998753 3333444443
No 80
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=98.20 E-value=1.3e-05 Score=87.46 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC----hhHHHHHHHHHHHHHhcccccCCceeEEEEEe-eecCcccceeccccccccccc
Q 004166 53 EARAIQHVRVLADEIGDRQEGR----PGLREAAVYIKTQLEGIKERAGPKFRIEIEEN-VVNGSFNMIFLGHSISLGYRN 127 (770)
Q Consensus 53 ~era~~~l~~L~~~ig~R~~gS----~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~-~~~g~~~~~~~~~~~~~~y~~ 127 (770)
.++..+.|++.. .|.. +..- .+-.+.++|+.++++++|.... -.++-.| ..+|. +-.
T Consensus 15 ~de~~~~L~e~v-~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~~~~---l~dlg~q~~~~g~-------------~v~ 76 (473)
T KOG2276|consen 15 KDEFINTLREAV-AIQS-VSADPTKRLEVRRMADWLRDYLTKLGAPLE---LVDLGYQSLPDGQ-------------IVP 76 (473)
T ss_pred HHHHHHHHHHHh-cccc-cccCccccHHHHHHHHHHHHHHHHhCCcee---eeecccCCCCCCc-------------ccc
Confidence 355667777776 4544 2222 2233789999999999993210 1111111 11111 111
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCC---------------------CCCCCCChhHHHHHHHHHHHHHhcCCCC
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLS---------------------SPGAGDCGSCVASMLELARLTIDSGWIP 186 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~---------------------s~GA~D~~sgva~~LE~ar~l~~~~~~~ 186 (770)
..-++--..|+++ +++.|++..|+|.+|. ++|+.||+.-++.-.++++++++.|...
T Consensus 77 lPpvvl~~~Gsdp--~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~l 154 (473)
T KOG2276|consen 77 LPPVVLGVLGSDP--SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDL 154 (473)
T ss_pred cChhhhhcccCCC--CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccc
Confidence 1222222336653 5688999999999884 7999999999999999999999999999
Q ss_pred CCCEEEEEeCcccCCccChHHHHhhcc--ccCceeEEEEec
Q 004166 187 PRPIIFLFNGAEELFMLGAHGFMKAHK--WRDSVGAVINVE 225 (770)
Q Consensus 187 ~~~I~flf~~~EE~gl~GS~~fi~~~~--~~~~i~a~INlD 225 (770)
+.+|+|+|-+-||.|..|-...+++.+ .-+.++.+..-|
T Consensus 155 pvnv~f~~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSd 195 (473)
T KOG2276|consen 155 PVNVVFVFEGMEESGSEGLDELIEKEKDKFFKDVDFVCISD 195 (473)
T ss_pred cceEEEEEEechhccCccHHHHHHHHhhhhhccCCEEEeeC
Confidence 999999999999999999988876442 224455544444
No 81
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.88 E-value=2.9e-05 Score=84.06 Aligned_cols=131 Identities=24% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEeccC------CCC-----
Q 004166 162 AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVEAS------GTG----- 230 (770)
Q Consensus 162 A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD~~------G~g----- 230 (770)
+-||..||++++|++|.+++. ..+.++.|+|+..||.|+.|++....+. +.+.+|.+|.. +..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 679999999999999999875 3459999999999999999999776642 33455666643 221
Q ss_pred ---CCceE-EeeCCC--CchhhHh---hhhccCccccccccccCCCCCCCCchHHHhccCCCCcEEEEEEecCCccCcCc
Q 004166 231 ---GLDLV-CQSGPS--SWPSSVY---AQSAIYPMAHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGYYYHTS 301 (770)
Q Consensus 231 ---g~~~l-fq~gp~--~~~~~~y---~~~~~~p~~~~l~~e~f~~ips~tD~~~F~~~~~gIPgld~a~~~~~~~YHT~ 301 (770)
|+.+. .+.++. +.+.+.. ++...-|+-. +. ....+||-..+...-.|+|...+..-. .+.||+
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~----~~--~~~ggTDa~~~~~~~~Gi~t~~i~iP~--ry~Hs~ 277 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEENGIPYQR----EV--FSGGGTDAGAIQLSGGGIPTAVISIPC--RYMHSP 277 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHHTT--EEE----EE--ESSSSSTHHHHHTSTTSSEEEEEEEEE--BSTTST
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHHcCCCeEE----Ee--cCCcccHHHHHHHcCCCCCEEEEeccc--ccCCCc
Confidence 12221 222111 1111111 1111122211 11 123578888875433699998876432 258998
Q ss_pred CcccC
Q 004166 302 HDTVD 306 (770)
Q Consensus 302 ~Dt~d 306 (770)
..+.+
T Consensus 278 ~e~~~ 282 (292)
T PF05343_consen 278 VEVID 282 (292)
T ss_dssp TEEEE
T ss_pred ceEEE
Confidence 87765
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00019 Score=80.50 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=119.9
Q ss_pred ccceEEEEEeCCC---CCCC-CCeEEEeecCCCCC----CCCCCCCChhHHHHHHHHHHHHHhcC--CCCCCCEEEEEeC
Q 004166 127 NHTNIVMRISSTD---SQDT-DPSVLMNGHFDGPL----SSPGAGDCGSCVASMLELARLTIDSG--WIPPRPIIFLFNG 196 (770)
Q Consensus 127 ~~~NVi~~i~g~~---~~~~-~~~Vll~aH~Dsv~----~s~GA~D~~sgva~~LE~ar~l~~~~--~~~~~~I~flf~~ 196 (770)
..+||..-+++.. ..++ +++++..+-+|+-. .++||...-++....|..+|+|++.. ...+++|.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 4567777665432 1122 57899999999964 37898889999999999999997652 3578999999999
Q ss_pred cccCCccChHHHHhhcccc------Cc---eeEEEEeccCCCC-CCceEEeeCCCC------c---hhhHhhhhcc-Ccc
Q 004166 197 AEELFMLGAHGFMKAHKWR------DS---VGAVINVEASGTG-GLDLVCQSGPSS------W---PSSVYAQSAI-YPM 256 (770)
Q Consensus 197 ~EE~gl~GS~~fi~~~~~~------~~---i~a~INlD~~G~g-g~~~lfq~gp~~------~---~~~~y~~~~~-~p~ 256 (770)
||-.+.+||.+++-+.... ++ ++.++.+-.+|-+ ++.+..-.++.. . ..+.++|+.. +++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 9999999999887554221 23 7777777776643 233322222211 1 1223333322 333
Q ss_pred ccccccccCCCCCCCCchHHHhccCCCCcEEEEEEecCCc---cCcCcCcccCCCCHHHH
Q 004166 257 AHSAAQDVFPVIPGDTDYRIFSQDYGDIPGLDIIFLIGGY---YYHTSHDTVDRLLPGSV 313 (770)
Q Consensus 257 ~~~l~~e~f~~ips~tD~~~F~~~~~gIPgld~a~~~~~~---~YHT~~Dt~d~id~~~l 313 (770)
.-....+.-..+|..| ...|.|.-.++.++-++-.+..+ +||+.+|+.|+++...-
T Consensus 316 ~ll~~s~~s~~lPPsS-lqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 DLLKPSGSSDRLPPSS-LQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred eeecCCCCCCCCChHH-HHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 2111122223455544 44565533789999888766433 89999999999976543
No 83
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=96.72 E-value=0.031 Score=63.01 Aligned_cols=138 Identities=22% Similarity=0.274 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEe
Q 004166 57 IQHVRVLADEIGDRQEGRPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRIS 136 (770)
Q Consensus 57 ~~~l~~L~~~ig~R~~gS~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~ 136 (770)
.+.+.++...+.-++-=+-++.++.+||.+.|+++|. + .++ ... ..+-|++.++
T Consensus 11 ~~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~------~-~~~--~~~-----------------~~TGvva~~~ 64 (392)
T COG1473 11 KDELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGF------E-VVE--VGG-----------------GKTGVVATLK 64 (392)
T ss_pred hHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCC------e-eEe--ccC-----------------CceEEEEEEc
Confidence 3445555556666666777778999999999999983 3 111 110 1257999999
Q ss_pred CCCCCCCCCeEEEeecCCCCCC-----------CCC----CCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCC
Q 004166 137 STDSQDTDPSVLMNGHFDGPLS-----------SPG----AGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELF 201 (770)
Q Consensus 137 g~~~~~~~~~Vll~aH~Dsv~~-----------s~G----A~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~g 201 (770)
|.+ +.+.|.+-|-||..|. .+| .+=|+ -++++|-+++.|++....++.+|+|+|-.+||.+
T Consensus 65 ~g~---~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD~-Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~ 140 (392)
T COG1473 65 GGK---PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHDG-HTAILLGAALALAEHKDNLPGTVRLIFQPAEEGG 140 (392)
T ss_pred CCC---CCCEEEEEeecccCccccccCCCcccCCCCCcccCCchH-HHHHHHHHHHHHHhhhhhCCcEEEEEeccccccc
Confidence 754 3458999999999983 233 33333 3577889999998775678999999999999987
Q ss_pred ccChHHHHhhccccCc-eeEEEEecc
Q 004166 202 MLGAHGFMKAHKWRDS-VGAVINVEA 226 (770)
Q Consensus 202 l~GS~~fi~~~~~~~~-i~a~INlD~ 226 (770)
- |+..++++-.. ++ +++++-+-.
T Consensus 141 ~-Ga~~mi~~G~~-~~~vD~v~g~H~ 164 (392)
T COG1473 141 G-GAKAMIEDGVF-DDFVDAVFGLHP 164 (392)
T ss_pred c-cHHHHHhcCCc-cccccEEEEecC
Confidence 7 99999985533 34 777766554
No 84
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=96.21 E-value=0.013 Score=66.38 Aligned_cols=60 Identities=18% Similarity=0.046 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCccChHHHHhhccccCceeEEEEec
Q 004166 163 GDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGFMKAHKWRDSVGAVINVE 225 (770)
Q Consensus 163 ~D~~sgva~~LE~ar~l~~~~-~~~~~~I~flf~~~EE~gl~GS~~fi~~~~~~~~i~a~INlD 225 (770)
.||.+|++.++++++.+++.. .-+..+|++.|+++||.|+.|++.+.-.. -.+....++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~---f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVAR---FLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHHh---hhcceeEecC
Confidence 488899999999999998552 45678999999999999999999876532 3456667777
No 85
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=94.41 E-value=0.25 Score=57.68 Aligned_cols=98 Identities=21% Similarity=0.278 Sum_probs=74.0
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHH
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 207 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~ 207 (770)
++||++.++.... +..+.+++.+-+++.. | .-|..|++.+|.++|.+++..+- .++|+|++.++| ..|.++
T Consensus 3 G~nvy~i~rapR~-d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~w-sKDii~l~~~~~---~~g~~a 73 (504)
T PF04114_consen 3 GTNVYGILRAPRG-DGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSYW-SKDIIFLFTDDE---LAGMQA 73 (504)
T ss_pred ceEEEEEEecCCC-CCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchhh-hccEEEEecCCc---chHHHH
Confidence 4799999987543 3457899999988754 2 44589999999999999987643 699999999865 468899
Q ss_pred HHhhc--c---------c---cCceeEEEEeccCCCCCCce
Q 004166 208 FMKAH--K---------W---RDSVGAVINVEASGTGGLDL 234 (770)
Q Consensus 208 fi~~~--~---------~---~~~i~a~INlD~~G~gg~~~ 234 (770)
|++++ . . +-.+.+.||+|-.+.....+
T Consensus 74 wl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v 114 (504)
T PF04114_consen 74 WLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSV 114 (504)
T ss_pred HHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEE
Confidence 99764 1 1 13688999999877554443
No 86
>PRK02256 putative aminopeptidase 1; Provisional
Probab=80.83 E-value=2.2 Score=49.39 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=38.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHHH
Q 004166 160 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHGF 208 (770)
Q Consensus 160 ~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~f 208 (770)
.++-||-.||.+++|+++... .+...+++++++.||.|..|++.-
T Consensus 256 s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA 300 (462)
T PRK02256 256 AYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGA 300 (462)
T ss_pred ccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhh
Confidence 678999999999999998654 356799999999999998877753
No 87
>COG1362 LAP4 Aspartyl aminopeptidase [Amino acid transport and metabolism]
Probab=71.81 E-value=22 Score=40.39 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeecC
Q 004166 74 RPGLREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHF 153 (770)
Q Consensus 74 S~~~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~ 153 (770)
|+..-.++.++++.+.+.|.+.-. +.+-+.....|.|. ..++..++++-.-|++.....+.-+++||.
T Consensus 20 spTpyh~v~~i~~~L~~~Gf~~l~--e~~~w~~~~ggkyf----------~~r~gssliAf~ig~~~~~~~gf~IigaHt 87 (437)
T COG1362 20 SPTPYHVVANIAERLLKAGFRELE--EKDAWKDKPGGKYF----------VTRNGSSLIAFIIGKKWKLESGFRIIGAHT 87 (437)
T ss_pred CCChHHHHHHHHHHHHHcCchhhh--hhhcccccCCCeEE----------EEcCCceEEEEEecCCCCCCCCeEEEEeec
Confidence 444567899999999998754321 11111111233321 225677999999888754566889999999
Q ss_pred CCC
Q 004166 154 DGP 156 (770)
Q Consensus 154 Dsv 156 (770)
||.
T Consensus 88 DSP 90 (437)
T COG1362 88 DSP 90 (437)
T ss_pred CCC
Confidence 995
No 88
>PRK02813 putative aminopeptidase 2; Provisional
Probab=64.43 E-value=5.7 Score=45.64 Aligned_cols=43 Identities=21% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCcc---ChHH
Q 004166 160 PGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFML---GAHG 207 (770)
Q Consensus 160 ~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~---GS~~ 207 (770)
.++-||-.||.+++|+++.+.+ +.++++++++-||.|.. ||+.
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s 275 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADS 275 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCc
Confidence 5789999999999999986642 67999999999999998 7774
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.39 E-value=29 Score=40.84 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=58.0
Q ss_pred cceEEEEEeCCCCCCCCCeEEEeecCCCCCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCEEEEEeCcccCCccChHH
Q 004166 128 HTNIVMRISSTDSQDTDPSVLMNGHFDGPLSSPGAGDCGSCVASMLELARLTIDSGWIPPRPIIFLFNGAEELFMLGAHG 207 (770)
Q Consensus 128 ~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv~~s~GA~D~~sgva~~LE~ar~l~~~~~~~~~~I~flf~~~EE~gl~GS~~ 207 (770)
+.||++.+++... ...+.+++..-+|.-. |. |..|++.++..++.+++..+ -.++|+|+++++ ...|-.+
T Consensus 120 G~NvyGilRAPRg-dgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~y-WsKDII~v~~d~---~~~g~~A 189 (617)
T KOG3566|consen 120 GENVYGILRAPRG-DGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWVY-WSKDIIFVFTDG---PALGLDA 189 (617)
T ss_pred CceEEEEEecCCC-CCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCee-ecccEEEEEeCC---ccccHHH
Confidence 6899999987543 3456788888888643 33 47899999999999987543 358999999987 5678889
Q ss_pred HHhhc
Q 004166 208 FMKAH 212 (770)
Q Consensus 208 fi~~~ 212 (770)
|.+++
T Consensus 190 wLeaY 194 (617)
T KOG3566|consen 190 WLEAY 194 (617)
T ss_pred HHHHh
Confidence 99865
No 90
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=55.17 E-value=16 Score=42.54 Aligned_cols=49 Identities=10% Similarity=-0.089 Sum_probs=35.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcC-CCCCCCEEEEEeCcccCCccChHHH
Q 004166 160 PGAGDCGSCVASMLELARLTIDSG-WIPPRPIIFLFNGAEELFMLGAHGF 208 (770)
Q Consensus 160 ~GA~D~~sgva~~LE~ar~l~~~~-~~~~~~I~flf~~~EE~gl~GS~~f 208 (770)
.++-||-.||.+++|+++...+.. ..+....++++++-||.|..|+++-
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA 296 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGA 296 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhc
Confidence 568899999999999998765310 1133445555599999999888764
No 91
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=38.03 E-value=1.3e+02 Score=28.52 Aligned_cols=46 Identities=24% Similarity=0.523 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecchh-hH--HHHHHHHHH
Q 004166 409 KGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHP-FL--AFMMFIPCS 457 (770)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~msw~s~~-~l--~~~ly~~~~ 457 (770)
.||+-+.=|+.+...+|+..++.+ .-+.+.||+|. |. ++++.+|..
T Consensus 39 LGFLsq~EGLFi~~LlPlFA~iAL---lanalgW~sHRQW~Rs~lG~iGP~l 87 (139)
T PRK13755 39 LGFLSQYEGLFISTLLPLFAAIAL---LANALGWFSHRQWLRSALGMIGPAL 87 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcchhHHH
Confidence 345555556666777776544332 25778888873 42 445555544
No 92
>PRK02813 putative aminopeptidase 2; Provisional
Probab=33.71 E-value=1.5e+02 Score=34.18 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCCCCCCCCeEEEeecCCCC
Q 004166 77 LREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQDTDPSVLMNGHFDGP 156 (770)
Q Consensus 77 ~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~Vll~aH~Dsv 156 (770)
.-.+++++.+.|++-|...-++ -+-..-.+.|.|. ..++...+++-.-|+++...+...+++||.|+.
T Consensus 21 ~~hav~~~~~~L~~~Gf~~l~e--~~~w~l~~g~kyy----------~~r~~~sliAf~vg~~~~~~~g~~iv~aH~DsP 88 (428)
T PRK02813 21 PFHAVANVAQRLEAAGFTELDE--TDAWKLEPGGRYY----------VVRNGSSLIAFRVGEGAPAETGFRIVGAHTDSP 88 (428)
T ss_pred HHHHHHHHHHHHHHcCCeeccc--cccCccCCCCEEE----------EEcCCcEEEEEEeCCCCccCCCeEEEEEeccCC
Confidence 3578999999999988532110 0001111222221 124566888888776543224689999999985
Q ss_pred C
Q 004166 157 L 157 (770)
Q Consensus 157 ~ 157 (770)
.
T Consensus 89 ~ 89 (428)
T PRK02813 89 G 89 (428)
T ss_pred C
Confidence 3
No 93
>COG3152 Predicted membrane protein [Function unknown]
Probab=33.46 E-value=3.8e+02 Score=25.52 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=11.5
Q ss_pred hhcccCCcchhhHHHHhhhHHHHHH
Q 004166 536 INFYGRRSLRSTLFYVVPLIPCITY 560 (770)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~p~~~ 560 (770)
+|+|+.....|+ .+.+++|+++
T Consensus 73 rRLHD~g~sgw~---~Ll~lip~vg 94 (125)
T COG3152 73 RRLHDRGRSGWW---ALLALIPVVG 94 (125)
T ss_pred HHHHhcCCchHH---HHHHHHHHHH
Confidence 666666543333 3345556664
No 94
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=25.19 E-value=5.3e+02 Score=23.53 Aligned_cols=9 Identities=0% Similarity=-0.249 Sum_probs=4.9
Q ss_pred hhhcccCCc
Q 004166 535 SINFYGRRS 543 (770)
Q Consensus 535 ~~~~~~~~~ 543 (770)
.+|.|+...
T Consensus 67 vRRlhD~G~ 75 (120)
T PF05656_consen 67 VRRLHDIGR 75 (120)
T ss_pred hhhhhcCCC
Confidence 366666543
No 95
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=23.67 E-value=1.6e+02 Score=34.44 Aligned_cols=69 Identities=17% Similarity=0.071 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhcccccCCceeEEEEEeeecCcccceeccccccccccccceEEEEEeCCCCC-CCCCeEEEeecCCC
Q 004166 77 LREAAVYIKTQLEGIKERAGPKFRIEIEENVVNGSFNMIFLGHSISLGYRNHTNIVMRISSTDSQ-DTDPSVLMNGHFDG 155 (770)
Q Consensus 77 ~e~a~~yl~~~l~~ig~~~~~~~~vev~~~~~~g~~~~~~~~~~~~~~y~~~~NVi~~i~g~~~~-~~~~~Vll~aH~Ds 155 (770)
.-.+++++.+.|++-|.+.-++ -+-.+....|.|. ..++...+++-.-|++.. ..+...+++||.||
T Consensus 22 ~~hav~~~~~~L~~~GF~~l~e--~~~w~l~~g~kyy----------v~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDs 89 (465)
T PTZ00371 22 PFHAVQELKERLKKSGFKQLNE--GENWKLEKGGKYY----------LTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDS 89 (465)
T ss_pred HHHHHHHHHHHHHHCcCEEccc--cccCccCCCCEEE----------EEcCCcEEEEEEeCCCCccCCCCeEEEEEeccC
Confidence 3578999999999988532110 0001111223221 124556788877776531 23468899999999
Q ss_pred CC
Q 004166 156 PL 157 (770)
Q Consensus 156 v~ 157 (770)
..
T Consensus 90 P~ 91 (465)
T PTZ00371 90 PC 91 (465)
T ss_pred CC
Confidence 43
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.06 E-value=1.4e+02 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004166 9 DVTAFKVLLVLSFMYGLMSALVYSIVHLKFV 39 (770)
Q Consensus 9 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 39 (770)
.+..+-++.+++++++..+++.|++.+++..
T Consensus 64 ~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566667777777777777777776555433
No 97
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=20.72 E-value=1.6e+03 Score=27.55 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHhhhhchHHHHHhhhhhhH
Q 004166 591 QDIVVAAAVGAVTGWCVGPLLPICGLWLARSS 622 (770)
Q Consensus 591 pd~iia~~~~~~~~~~~~~l~pl~~~~~~~~~ 622 (770)
+|.+.+.+.++....+.--++|++...+.-.+
T Consensus 434 ~~~~~~flsGl~s~il~iGllP~fE~~F~~~T 465 (700)
T COG1480 434 QDAIFAFLSGLLSGILVLGLLPYFEALFGLLT 465 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 78888888888888777778899875554433
No 98
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=20.31 E-value=1.1e+03 Score=25.54 Aligned_cols=65 Identities=8% Similarity=0.129 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecchhhHHHHHHHHHHHHHHHHHHh
Q 004166 402 ATYSDFVKGMMIHATGKMLAIIFPIAFSVLRLLFSGYAMSWFAHPFLAFMMFIPCSLLGLLIPRS 466 (770)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~msw~s~~~l~~~ly~~~~~~g~~~~~~ 466 (770)
.....+...+.+.+.++++++++.+.+++......++...+..++...++.-.|...++.++...
T Consensus 93 ~i~~~l~~Tl~l~~~a~~la~~iGi~lGi~~~~~~~~~~d~~~~~~~~~~~siP~f~l~~lli~~ 157 (314)
T TIGR02789 93 EIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWG 157 (314)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566666666666555554322211223333334444445556777777666544
Done!