Query 004169
Match_columns 770
No_of_seqs 204 out of 554
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 16:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ysm_A Myeloid/lymphoid or mix 99.4 3.2E-13 1.1E-17 123.2 6.8 102 212-351 3-107 (111)
2 4gne_A Histone-lysine N-methyl 99.1 1.3E-10 4.6E-15 106.5 6.6 78 213-319 12-90 (107)
3 3v43_A Histone acetyltransfera 99.0 6.8E-10 2.3E-14 101.8 7.1 91 276-381 5-97 (112)
4 2kwj_A Zinc finger protein DPF 98.9 4E-10 1.4E-14 103.8 3.7 79 217-317 2-92 (114)
5 2ysm_A Myeloid/lymphoid or mix 98.9 2E-09 6.8E-14 98.1 7.3 82 276-381 7-89 (111)
6 3v43_A Histone acetyltransfera 98.8 1.6E-09 5.6E-14 99.3 4.1 82 215-317 4-96 (112)
7 4gne_A Histone-lysine N-methyl 98.7 1.6E-08 5.5E-13 92.7 6.4 75 277-382 16-90 (107)
8 1mm2_A MI2-beta; PHD, zinc fin 98.7 1.1E-08 3.7E-13 84.7 4.5 52 212-275 5-56 (61)
9 2kwj_A Zinc finger protein DPF 98.7 1.9E-08 6.4E-13 92.6 5.9 88 278-381 3-93 (114)
10 1xwh_A Autoimmune regulator; P 98.6 1.1E-08 3.9E-13 85.7 3.4 51 213-275 5-55 (66)
11 2l5u_A Chromodomain-helicase-D 98.6 1.6E-08 5.5E-13 83.7 3.7 52 212-275 7-58 (61)
12 1fp0_A KAP-1 corepressor; PHD 98.6 3.3E-08 1.1E-12 87.8 4.9 52 211-274 20-71 (88)
13 2puy_A PHD finger protein 21A; 98.6 2E-08 6.8E-13 82.5 2.8 51 213-275 2-52 (60)
14 3u5n_A E3 ubiquitin-protein li 98.6 2.4E-08 8.1E-13 100.3 3.9 52 211-274 2-53 (207)
15 2yql_A PHD finger protein 21A; 98.5 5.4E-08 1.8E-12 79.0 3.5 50 213-274 6-55 (56)
16 3o36_A Transcription intermedi 98.5 6.5E-08 2.2E-12 95.2 4.3 50 214-275 2-51 (184)
17 2lri_C Autoimmune regulator; Z 98.4 1.4E-07 4.7E-12 79.5 3.4 49 214-274 10-58 (66)
18 2yt5_A Metal-response element- 98.3 2.6E-07 8.7E-12 76.9 2.0 55 213-276 3-62 (66)
19 2lbm_A Transcriptional regulat 98.3 2E-07 6.9E-12 89.3 1.5 56 212-274 59-116 (142)
20 2l43_A N-teminal domain from h 98.2 3.1E-07 1.1E-11 81.3 2.5 48 214-275 23-75 (88)
21 2ro1_A Transcription intermedi 98.2 6.4E-07 2.2E-11 89.1 4.3 49 216-276 2-50 (189)
22 2ku3_A Bromodomain-containing 98.2 3.4E-07 1.2E-11 78.2 1.7 49 213-275 13-66 (71)
23 2e6r_A Jumonji/ARID domain-con 98.2 7.9E-07 2.7E-11 79.3 3.7 53 211-275 11-66 (92)
24 1f62_A Transcription factor WS 98.1 9.5E-07 3.2E-11 70.0 2.4 45 218-274 2-49 (51)
25 2k16_A Transcription initiatio 98.1 7.8E-07 2.7E-11 75.8 1.9 51 213-275 15-68 (75)
26 1wen_A Inhibitor of growth fam 98.1 3.2E-06 1.1E-10 72.1 5.0 48 214-275 14-65 (71)
27 3ql9_A Transcriptional regulat 98.0 5.6E-07 1.9E-11 85.0 -0.0 58 211-275 52-111 (129)
28 1weu_A Inhibitor of growth fam 98.0 5.8E-06 2E-10 73.9 6.3 48 214-275 34-85 (91)
29 1wev_A Riken cDNA 1110020M19; 98.0 1.2E-06 4E-11 77.5 1.4 52 215-275 15-72 (88)
30 2g6q_A Inhibitor of growth pro 97.9 3.7E-06 1.3E-10 70.0 2.0 46 216-275 11-60 (62)
31 2e6s_A E3 ubiquitin-protein li 97.9 8E-06 2.8E-10 70.7 3.9 48 215-274 25-76 (77)
32 3asl_A E3 ubiquitin-protein li 97.8 7.2E-06 2.5E-10 69.6 3.0 45 218-274 20-68 (70)
33 3c6w_A P28ING5, inhibitor of g 97.8 5.3E-06 1.8E-10 68.3 1.9 46 215-274 8-57 (59)
34 2vnf_A ING 4, P29ING4, inhibit 97.8 5.5E-06 1.9E-10 68.3 1.8 46 215-274 9-58 (60)
35 1we9_A PHD finger family prote 97.7 1.5E-05 5.1E-10 65.8 3.2 51 214-275 4-58 (64)
36 2lv9_A Histone-lysine N-methyl 97.6 4E-05 1.4E-09 68.9 4.6 43 218-273 32-74 (98)
37 2jmi_A Protein YNG1, ING1 homo 97.6 2.7E-05 9.3E-10 69.4 3.1 46 215-274 25-75 (90)
38 3ask_A E3 ubiquitin-protein li 97.5 3.9E-05 1.3E-09 78.6 3.3 47 216-274 174-224 (226)
39 2xb1_A Pygopus homolog 2, B-ce 97.5 1.3E-05 4.3E-10 73.1 -0.4 50 216-275 3-61 (105)
40 3asl_A E3 ubiquitin-protein li 97.5 7.1E-05 2.4E-09 63.5 3.7 42 336-381 12-53 (70)
41 2e6s_A E3 ubiquitin-protein li 97.4 8.2E-05 2.8E-09 64.4 4.0 42 336-381 20-61 (77)
42 2ri7_A Nucleosome-remodeling f 97.4 1.9E-05 6.5E-10 76.7 -0.1 50 214-275 6-59 (174)
43 2vpb_A Hpygo1, pygopus homolog 97.4 1E-05 3.4E-10 68.0 -2.0 51 213-273 5-64 (65)
44 3shb_A E3 ubiquitin-protein li 97.4 8.4E-05 2.9E-09 64.4 3.1 45 218-274 28-76 (77)
45 3shb_A E3 ubiquitin-protein li 97.3 0.00012 4.1E-09 63.4 3.3 42 336-381 20-61 (77)
46 1wem_A Death associated transc 97.2 7.8E-05 2.7E-09 63.7 1.0 50 214-275 14-70 (76)
47 1wep_A PHF8; structural genomi 97.1 0.00019 6.5E-09 61.9 2.9 48 216-275 12-63 (79)
48 2kgg_A Histone demethylase jar 97.1 0.00012 4E-09 58.5 1.5 44 219-273 5-52 (52)
49 1f62_A Transcription factor WS 97.1 0.00012 4.2E-09 57.8 1.2 34 344-381 2-35 (51)
50 1fp0_A KAP-1 corepressor; PHD 97.0 0.0003 1E-08 62.6 3.3 46 344-413 27-72 (88)
51 1wee_A PHD finger family prote 97.0 0.0003 1E-08 59.6 3.0 48 214-274 14-65 (72)
52 3o70_A PHD finger protein 13; 97.0 0.00037 1.3E-08 58.8 3.3 46 215-274 18-66 (68)
53 1wew_A DNA-binding family prot 96.9 0.00047 1.6E-08 59.4 3.3 50 215-275 15-72 (78)
54 1x4i_A Inhibitor of growth pro 96.9 0.00035 1.2E-08 59.4 2.1 46 216-275 6-55 (70)
55 3ask_A E3 ubiquitin-protein li 96.9 0.00042 1.4E-08 71.1 3.0 42 336-381 168-209 (226)
56 2puy_A PHD finger protein 21A; 96.8 0.00033 1.1E-08 57.3 1.1 31 344-381 7-37 (60)
57 2rsd_A E3 SUMO-protein ligase 96.8 0.00059 2E-08 57.3 2.6 47 217-274 11-64 (68)
58 2e6r_A Jumonji/ARID domain-con 96.8 0.00035 1.2E-08 62.2 1.3 50 344-414 18-67 (92)
59 2lri_C Autoimmune regulator; Z 96.8 0.00037 1.3E-08 58.6 1.3 47 342-412 12-58 (66)
60 1mm2_A MI2-beta; PHD, zinc fin 96.7 0.00071 2.4E-08 55.8 3.0 31 344-381 11-41 (61)
61 1xwh_A Autoimmune regulator; P 96.7 0.00049 1.7E-08 57.4 1.7 31 344-381 10-40 (66)
62 1wil_A KIAA1045 protein; ring 96.5 0.00091 3.1E-08 58.9 2.2 61 211-274 10-75 (89)
63 3o36_A Transcription intermedi 96.5 0.001 3.4E-08 65.4 2.6 45 344-412 6-50 (184)
64 2l5u_A Chromodomain-helicase-D 96.5 0.00061 2.1E-08 56.2 0.8 31 344-381 13-43 (61)
65 3kqi_A GRC5, PHD finger protei 96.4 0.00071 2.4E-08 57.8 1.0 48 216-274 9-60 (75)
66 2yql_A PHD finger protein 21A; 96.4 0.0019 6.5E-08 52.1 3.3 31 344-381 11-41 (56)
67 3u5n_A E3 ubiquitin-protein li 96.4 0.0012 4E-08 66.2 2.5 47 343-413 8-54 (207)
68 1wev_A Riken cDNA 1110020M19; 96.3 0.0023 7.9E-08 56.4 3.3 37 343-381 17-53 (88)
69 2yt5_A Metal-response element- 96.2 0.0033 1.1E-07 52.0 3.8 37 343-381 7-43 (66)
70 2ro1_A Transcription intermedi 96.2 0.0018 6E-08 64.4 2.5 31 344-381 4-34 (189)
71 3o7a_A PHD finger protein 13 v 96.2 0.0024 8.1E-08 50.9 2.6 40 221-273 8-50 (52)
72 2lbm_A Transcriptional regulat 95.5 0.0078 2.7E-07 57.8 3.6 62 265-342 39-113 (142)
73 3kv5_D JMJC domain-containing 95.4 0.0029 9.8E-08 71.4 0.3 48 216-275 37-88 (488)
74 3a1b_A DNA (cytosine-5)-methyl 95.2 0.0042 1.4E-07 60.6 0.7 57 211-273 74-132 (159)
75 2k16_A Transcription initiatio 95.1 0.006 2.1E-07 51.7 1.4 33 344-380 20-52 (75)
76 3lqh_A Histone-lysine N-methyl 95.0 0.0053 1.8E-07 61.1 0.9 48 217-275 3-63 (183)
77 2ku3_A Bromodomain-containing 94.9 0.0088 3E-07 50.9 1.7 34 344-379 18-51 (71)
78 2lv9_A Histone-lysine N-methyl 94.7 0.018 6.2E-07 51.6 3.4 30 347-380 32-61 (98)
79 2l43_A N-teminal domain from h 94.4 0.011 3.6E-07 52.3 1.1 36 343-380 26-61 (88)
80 3pur_A Lysine-specific demethy 93.5 0.025 8.7E-07 64.2 2.2 37 227-274 57-93 (528)
81 3ql9_A Transcriptional regulat 93.3 0.012 4.1E-07 55.7 -0.7 31 343-380 58-88 (129)
82 3kv4_A PHD finger protein 8; e 93.1 0.014 4.8E-07 65.2 -0.6 47 218-275 6-56 (447)
83 2pv0_B DNA (cytosine-5)-methyl 92.9 0.023 7.9E-07 62.4 0.7 57 211-273 88-146 (386)
84 1we9_A PHD finger family prote 92.4 0.068 2.3E-06 43.8 2.8 33 344-379 8-40 (64)
85 4bbq_A Lysine-specific demethy 92.2 0.057 1.9E-06 49.0 2.3 87 217-317 8-94 (117)
86 1wil_A KIAA1045 protein; ring 90.9 0.026 9E-07 49.8 -1.3 33 277-317 16-48 (89)
87 3lqh_A Histone-lysine N-methyl 90.7 0.12 4E-06 51.5 2.9 36 343-378 3-38 (183)
88 3dou_A Ribosomal RNA large sub 90.4 0.17 5.7E-06 49.2 3.7 37 685-722 10-46 (191)
89 2plw_A Ribosomal RNA methyltra 90.3 0.16 5.4E-06 48.2 3.4 38 685-723 7-44 (201)
90 2xb1_A Pygopus homolog 2, B-ce 90.3 0.15 5.2E-06 46.2 3.1 60 341-414 2-62 (105)
91 3uwp_A Histone-lysine N-methyl 89.8 0.85 2.9E-05 50.9 9.0 79 631-721 103-193 (438)
92 3rsn_A SET1/ASH2 histone methy 89.8 0.16 5.6E-06 50.3 3.0 24 221-245 9-36 (177)
93 2h1r_A Dimethyladenosine trans 89.1 0.24 8.2E-06 51.6 3.9 43 676-720 18-61 (299)
94 2ri7_A Nucleosome-remodeling f 88.9 0.084 2.9E-06 51.0 0.3 31 344-378 10-40 (174)
95 1zq9_A Probable dimethyladenos 88.7 0.33 1.1E-05 50.2 4.5 44 676-721 4-48 (285)
96 2kgg_A Histone demethylase jar 88.6 0.23 7.7E-06 39.4 2.5 31 345-378 5-36 (52)
97 1wem_A Death associated transc 88.5 0.13 4.3E-06 43.7 1.0 30 344-378 18-47 (76)
98 3o70_A PHD finger protein 13; 88.3 0.23 7.8E-06 41.7 2.5 31 344-379 21-51 (68)
99 2ku7_A MLL1 PHD3-CYP33 RRM chi 87.1 0.19 6.5E-06 45.4 1.4 37 228-275 2-44 (140)
100 2nyu_A Putative ribosomal RNA 86.8 0.46 1.6E-05 44.7 3.9 38 685-723 7-44 (196)
101 2vpb_A Hpygo1, pygopus homolog 86.5 0.2 7E-06 41.8 1.2 33 343-378 9-42 (65)
102 3uzu_A Ribosomal RNA small sub 86.5 0.6 2E-05 48.6 4.9 46 676-723 18-64 (279)
103 1qam_A ERMC' methyltransferase 86.4 0.55 1.9E-05 47.3 4.5 45 676-722 6-51 (244)
104 3lbf_A Protein-L-isoaspartate 86.4 1.2 4.2E-05 42.4 6.7 42 678-721 56-97 (210)
105 1wep_A PHF8; structural genomi 86.0 0.22 7.4E-06 42.7 1.1 31 344-378 14-44 (79)
106 1i1n_A Protein-L-isoaspartate 85.9 0.86 2.9E-05 44.1 5.4 52 672-723 48-99 (226)
107 1wee_A PHD finger family prote 85.0 0.45 1.5E-05 40.0 2.5 32 344-379 18-49 (72)
108 2okc_A Type I restriction enzy 84.7 1.2 4.1E-05 48.8 6.5 98 624-723 77-193 (445)
109 1vbf_A 231AA long hypothetical 84.6 0.87 3E-05 44.1 4.8 43 678-722 49-91 (231)
110 1wen_A Inhibitor of growth fam 84.4 0.45 1.5E-05 40.3 2.3 30 343-378 17-49 (71)
111 2g6q_A Inhibitor of growth pro 84.1 0.33 1.1E-05 40.1 1.3 29 344-378 13-44 (62)
112 1weu_A Inhibitor of growth fam 83.6 0.43 1.5E-05 42.5 1.9 30 343-378 37-69 (91)
113 1ej0_A FTSJ; methyltransferase 83.6 0.99 3.4E-05 40.7 4.4 37 686-723 8-44 (180)
114 3c6w_A P28ING5, inhibitor of g 83.4 0.37 1.3E-05 39.4 1.3 29 344-378 11-42 (59)
115 2px2_A Genome polyprotein [con 83.0 0.62 2.1E-05 48.9 3.1 36 685-722 59-94 (269)
116 2vnf_A ING 4, P29ING4, inhibit 82.8 0.4 1.4E-05 39.2 1.3 29 344-378 12-43 (60)
117 3a1b_A DNA (cytosine-5)-methyl 82.5 0.81 2.8E-05 44.7 3.5 50 276-340 79-128 (159)
118 2ar0_A M.ecoki, type I restric 82.2 3.2 0.00011 47.0 8.8 103 623-727 69-195 (541)
119 3tqs_A Ribosomal RNA small sub 82.1 0.91 3.1E-05 46.6 4.0 43 676-720 5-48 (255)
120 2pbf_A Protein-L-isoaspartate 81.8 1.4 4.8E-05 42.6 5.0 56 668-723 47-102 (227)
121 1wew_A DNA-binding family prot 81.6 0.42 1.4E-05 40.9 1.0 30 344-378 18-49 (78)
122 1yub_A Ermam, rRNA methyltrans 81.4 0.83 2.8E-05 45.6 3.3 45 676-722 5-50 (245)
123 3lkd_A Type I restriction-modi 80.8 2.6 9E-05 47.9 7.5 48 676-723 194-243 (542)
124 1r18_A Protein-L-isoaspartate( 80.7 2 6.7E-05 41.9 5.6 49 676-724 59-107 (227)
125 3o7a_A PHD finger protein 13 v 79.5 0.91 3.1E-05 35.8 2.3 29 347-379 8-36 (52)
126 3ftd_A Dimethyladenosine trans 79.4 1.1 3.7E-05 45.7 3.4 45 676-722 7-52 (249)
127 2p41_A Type II methyltransfera 79.2 0.89 3.1E-05 47.7 2.8 37 684-722 67-103 (305)
128 2pv0_B DNA (cytosine-5)-methyl 79.0 1.4 4.6E-05 48.6 4.2 37 276-320 93-129 (386)
129 2rsd_A E3 SUMO-protein ligase 78.9 1 3.5E-05 37.5 2.5 27 347-377 14-42 (68)
130 2lq6_A Bromodomain-containing 78.7 0.77 2.6E-05 40.3 1.8 31 214-244 15-48 (87)
131 2oxt_A Nucleoside-2'-O-methylt 78.2 1.1 3.8E-05 46.1 3.0 36 685-722 60-95 (265)
132 3fut_A Dimethyladenosine trans 78.1 1.7 5.9E-05 45.1 4.5 61 647-722 5-67 (271)
133 2yxe_A Protein-L-isoaspartate 78.0 2.4 8.3E-05 40.5 5.2 44 678-723 56-99 (215)
134 4ap4_A E3 ubiquitin ligase RNF 77.1 0.11 3.9E-06 46.6 -4.2 84 215-317 6-110 (133)
135 3gcz_A Polyprotein; flavivirus 76.3 1.3 4.6E-05 46.7 3.1 35 685-721 76-110 (282)
136 2jmi_A Protein YNG1, ING1 homo 76.2 1.2 4.1E-05 39.6 2.3 30 343-378 27-59 (90)
137 2ih2_A Modification methylase 76.1 2.2 7.5E-05 45.4 4.7 47 675-723 15-61 (421)
138 1wy7_A Hypothetical protein PH 75.6 2.1 7.1E-05 40.7 4.0 45 677-721 24-69 (207)
139 4ap4_A E3 ubiquitin ligase RNF 75.4 0.39 1.3E-05 43.0 -1.1 16 302-317 30-45 (133)
140 2f8l_A Hypothetical protein LM 74.4 1.5 5E-05 46.2 2.8 69 648-724 83-153 (344)
141 3evf_A RNA-directed RNA polyme 74.4 1.5 5E-05 46.3 2.8 36 685-722 60-95 (277)
142 1jg1_A PIMT;, protein-L-isoasp 74.3 3.7 0.00013 40.2 5.5 45 677-723 69-113 (235)
143 1nt2_A Fibrillarin-like PRE-rR 73.8 2.7 9.4E-05 41.1 4.4 55 666-723 20-79 (210)
144 3e05_A Precorrin-6Y C5,15-meth 73.7 4.4 0.00015 38.5 5.8 39 682-722 23-61 (204)
145 2wa2_A Non-structural protein 73.7 1.7 5.7E-05 45.1 3.0 36 685-722 68-103 (276)
146 3gru_A Dimethyladenosine trans 73.3 2.7 9.1E-05 44.2 4.4 50 671-722 20-71 (295)
147 3eey_A Putative rRNA methylase 72.8 3.1 0.00011 39.1 4.4 40 682-723 5-44 (197)
148 3id6_C Fibrillarin-like rRNA/T 72.5 2 6.9E-05 43.6 3.2 34 690-723 64-98 (232)
149 3ufb_A Type I restriction-modi 72.1 3.2 0.00011 47.0 5.0 46 678-725 196-241 (530)
150 3kqi_A GRC5, PHD finger protei 72.0 0.86 2.9E-05 38.6 0.3 29 347-378 14-42 (75)
151 3evz_A Methyltransferase; NYSG 71.9 3.3 0.00011 40.0 4.5 28 695-722 49-77 (230)
152 1ws6_A Methyltransferase; stru 70.5 3.2 0.00011 37.6 3.8 38 683-720 23-60 (171)
153 1iym_A EL5; ring-H2 finger, ub 70.2 3.1 0.00011 31.8 3.1 16 302-317 25-40 (55)
154 3njr_A Precorrin-6Y methylase; 67.5 7.3 0.00025 37.7 5.8 53 665-720 22-74 (204)
155 3eld_A Methyltransferase; flav 64.8 3.2 0.00011 44.2 2.9 36 685-722 67-102 (300)
156 2lq6_A Bromodomain-containing 64.7 2.8 9.6E-05 36.7 2.0 32 277-314 18-49 (87)
157 2d8s_A Cellular modulator of i 63.8 3.1 0.00011 35.7 2.1 38 277-317 16-53 (80)
158 2ecl_A Ring-box protein 2; RNF 63.5 2.9 0.0001 35.3 1.9 46 266-317 15-61 (81)
159 1ne2_A Hypothetical protein TA 62.7 4.6 0.00016 38.3 3.3 46 677-722 26-72 (200)
160 3kv5_D JMJC domain-containing 61.7 1.8 6.2E-05 48.9 0.3 29 347-378 41-69 (488)
161 4bbq_A Lysine-specific demethy 61.1 2.6 8.7E-05 38.0 1.1 24 356-379 70-93 (117)
162 1dl5_A Protein-L-isoaspartate 61.0 6.5 0.00022 40.7 4.3 42 680-723 56-97 (317)
163 4gek_A TRNA (CMO5U34)-methyltr 60.6 4.8 0.00016 41.0 3.2 33 689-721 58-90 (261)
164 1i4w_A Mitochondrial replicati 60.3 13 0.00046 40.1 6.7 75 660-739 11-111 (353)
165 1x4i_A Inhibitor of growth pro 59.7 2.5 8.4E-05 35.7 0.7 29 344-378 8-39 (70)
166 3av4_A DNA (cytosine-5)-methyl 59.6 22 0.00076 44.8 9.3 104 57-160 166-278 (1330)
167 3khk_A Type I restriction-modi 58.8 7 0.00024 44.4 4.4 46 676-724 222-267 (544)
168 3hm2_A Precorrin-6Y C5,15-meth 58.3 6.5 0.00022 35.9 3.4 39 681-721 7-45 (178)
169 2pxx_A Uncharacterized protein 58.0 9.9 0.00034 35.6 4.7 31 691-721 32-62 (215)
170 3d2l_A SAM-dependent methyltra 57.8 4 0.00014 39.3 1.9 29 691-719 23-51 (243)
171 3q87_B N6 adenine specific DNA 56.6 6 0.0002 37.0 2.9 40 683-722 5-44 (170)
172 2xyq_A Putative 2'-O-methyl tr 56.2 8 0.00027 40.5 4.0 39 674-712 29-74 (290)
173 2h00_A Methyltransferase 10 do 55.7 12 0.00039 36.9 4.9 23 701-723 65-87 (254)
174 3hem_A Cyclopropane-fatty-acyl 55.5 9.9 0.00034 38.5 4.5 35 686-722 59-93 (302)
175 1m6y_A S-adenosyl-methyltransf 54.7 6.9 0.00023 41.1 3.2 35 687-723 14-48 (301)
176 1dus_A MJ0882; hypothetical pr 54.6 8.9 0.0003 35.1 3.7 49 669-719 17-70 (194)
177 2yxd_A Probable cobalt-precorr 54.1 14 0.00048 33.5 4.9 38 681-720 17-54 (183)
178 1wzn_A SAM-dependent methyltra 53.7 23 0.00078 34.4 6.6 21 700-720 40-60 (252)
179 1l3i_A Precorrin-6Y methyltran 53.6 13 0.00046 33.8 4.7 37 682-720 16-52 (192)
180 3a27_A TYW2, uncharacterized p 52.9 11 0.00037 38.3 4.3 24 699-722 117-140 (272)
181 2ct0_A Non-SMC element 1 homol 52.7 7.6 0.00026 33.1 2.6 33 277-318 16-48 (74)
182 3mti_A RRNA methylase; SAM-dep 52.6 7.5 0.00026 36.1 2.8 25 696-720 17-41 (185)
183 2zig_A TTHA0409, putative modi 52.0 9.2 0.00032 39.4 3.7 39 679-719 214-253 (297)
184 3iv6_A Putative Zn-dependent a 52.0 6 0.00021 40.8 2.2 34 685-720 31-64 (261)
185 3ege_A Putative methyltransfer 51.1 11 0.00036 37.5 3.8 34 686-721 21-54 (261)
186 3dpl_R Ring-box protein 1; ubi 51.0 4.6 0.00016 36.3 1.1 16 302-317 71-86 (106)
187 2frn_A Hypothetical protein PH 50.5 7.7 0.00026 39.5 2.7 24 698-721 122-145 (278)
188 3ujc_A Phosphoethanolamine N-m 50.3 14 0.00047 36.0 4.4 37 685-723 41-77 (266)
189 3k6r_A Putative transferase PH 50.0 6.3 0.00021 41.1 2.0 26 694-719 118-143 (278)
190 3hp7_A Hemolysin, putative; st 49.5 12 0.00041 39.4 4.1 43 673-721 63-105 (291)
191 3opn_A Putative hemolysin; str 49.4 11 0.00039 37.6 3.7 44 673-722 15-58 (232)
192 1g60_A Adenine-specific methyl 49.2 7.7 0.00026 39.2 2.5 36 681-718 193-229 (260)
193 3bkx_A SAM-dependent methyltra 49.1 15 0.00051 36.3 4.5 38 684-723 28-65 (275)
194 4df3_A Fibrillarin-like rRNA/T 49.1 7.3 0.00025 39.7 2.3 28 696-723 72-99 (233)
195 2nxc_A L11 mtase, ribosomal pr 49.0 13 0.00044 37.2 4.1 29 693-721 112-140 (254)
196 1jsx_A Glucose-inhibited divis 49.0 24 0.00084 33.1 5.8 33 689-722 52-86 (207)
197 3grz_A L11 mtase, ribosomal pr 48.7 9.8 0.00034 36.0 3.0 32 689-720 48-79 (205)
198 2fk8_A Methoxy mycolic acid sy 48.5 14 0.00048 37.6 4.3 37 685-723 76-112 (318)
199 3nw0_A Non-structural maintena 48.1 9.7 0.00033 39.0 3.0 33 276-317 180-212 (238)
200 3tma_A Methyltransferase; thum 47.9 20 0.00068 37.6 5.5 73 648-722 149-224 (354)
201 3k1l_B Fancl; UBC, ring, RWD, 47.8 14 0.00048 40.5 4.3 41 275-317 307-347 (381)
202 1ve3_A Hypothetical protein PH 47.5 12 0.0004 35.6 3.4 36 686-721 23-58 (227)
203 2lk0_A RNA-binding protein 5; 47.1 8.1 0.00028 27.9 1.6 22 264-285 3-28 (32)
204 1eg2_A Modification methylase 46.8 9.5 0.00032 40.3 2.8 60 681-742 223-306 (319)
205 1g8a_A Fibrillarin-like PRE-rR 46.0 15 0.00053 35.3 4.0 35 689-723 60-95 (227)
206 2ku7_A MLL1 PHD3-CYP33 RRM chi 44.8 4.1 0.00014 36.5 -0.3 19 360-378 1-19 (140)
207 3ajd_A Putative methyltransfer 44.5 9.6 0.00033 38.6 2.3 23 699-721 81-103 (274)
208 1kpg_A CFA synthase;, cyclopro 44.5 19 0.00063 36.0 4.4 35 686-722 51-85 (287)
209 2kiz_A E3 ubiquitin-protein li 43.8 11 0.00037 30.1 2.1 32 213-245 11-45 (69)
210 2b9e_A NOL1/NOP2/SUN domain fa 43.6 10 0.00035 39.9 2.4 25 699-723 100-124 (309)
211 3l8d_A Methyltransferase; stru 43.3 11 0.00039 36.1 2.6 32 691-722 43-74 (242)
212 4ayc_A E3 ubiquitin-protein li 43.1 7.4 0.00025 35.9 1.1 16 302-317 69-84 (138)
213 2b25_A Hypothetical protein; s 43.1 22 0.00075 36.8 4.8 41 681-723 87-127 (336)
214 1v87_A Deltex protein 2; ring- 43.0 10 0.00035 33.3 2.0 16 302-317 59-74 (114)
215 3p9n_A Possible methyltransfer 42.8 21 0.00074 33.3 4.3 38 681-718 23-61 (189)
216 3lkz_A Non-structural protein 42.6 12 0.00042 40.1 2.8 34 685-720 80-113 (321)
217 3bgv_A MRNA CAP guanine-N7 met 41.9 13 0.00044 38.0 2.8 38 684-721 17-54 (313)
218 1nkv_A Hypothetical protein YJ 41.9 20 0.00068 34.8 4.1 36 685-722 22-57 (256)
219 3i9f_A Putative type 11 methyl 41.7 21 0.00073 32.4 4.0 23 699-721 15-37 (170)
220 2rgt_A Fusion of LIM/homeobox 41.7 13 0.00046 35.2 2.7 82 216-312 6-93 (169)
221 1vl5_A Unknown conserved prote 40.9 14 0.00049 36.2 2.9 37 682-720 20-56 (260)
222 3dli_A Methyltransferase; PSI- 40.8 20 0.00068 34.8 3.9 38 685-722 25-62 (240)
223 1vyx_A ORF K3, K3RING; zinc-bi 40.8 9.4 0.00032 30.9 1.3 37 276-317 6-42 (60)
224 2ipx_A RRNA 2'-O-methyltransfe 40.7 23 0.00078 34.4 4.3 26 698-723 74-99 (233)
225 3ou2_A SAM-dependent methyltra 40.6 9.2 0.00031 36.0 1.4 34 688-722 34-67 (218)
226 3c0k_A UPF0064 protein YCCW; P 40.5 26 0.00088 37.5 5.0 47 670-721 187-240 (396)
227 2cup_A Skeletal muscle LIM-pro 40.5 24 0.00081 30.2 3.9 86 214-313 3-95 (101)
228 2jjq_A Uncharacterized RNA met 40.0 19 0.00064 39.5 3.9 33 685-721 278-310 (425)
229 1fbn_A MJ fibrillarin homologu 40.0 27 0.00091 34.0 4.7 36 688-723 60-96 (230)
230 1ixk_A Methyltransferase; open 40.0 13 0.00045 38.7 2.6 24 699-722 116-139 (315)
231 2p35_A Trans-aconitate 2-methy 39.9 30 0.001 33.5 5.0 47 673-723 9-55 (259)
232 3pur_A Lysine-specific demethy 39.5 13 0.00044 42.5 2.5 22 357-378 54-75 (528)
233 2b3t_A Protein methyltransfera 39.2 19 0.00065 36.1 3.5 30 690-722 101-130 (276)
234 3p2e_A 16S rRNA methylase; met 39.2 9.9 0.00034 37.6 1.4 28 694-721 17-44 (225)
235 3pfq_A PKC-B, PKC-beta, protei 39.0 16 0.00055 42.1 3.3 97 214-317 46-149 (674)
236 3rsn_A SET1/ASH2 histone methy 38.8 12 0.00041 37.0 1.9 22 357-378 16-37 (177)
237 3cgg_A SAM-dependent methyltra 38.6 9.7 0.00033 34.9 1.2 24 698-721 43-66 (195)
238 3p8z_A Mtase, non-structural p 38.6 17 0.00057 38.1 3.0 51 685-741 64-114 (267)
239 2fhp_A Methylase, putative; al 38.5 26 0.0009 32.1 4.1 36 683-719 27-62 (187)
240 3jwh_A HEN1; methyltransferase 38.2 22 0.00077 33.8 3.7 35 686-722 16-50 (217)
241 2pwy_A TRNA (adenine-N(1)-)-me 38.0 30 0.001 33.6 4.6 35 687-723 84-118 (258)
242 3mb5_A SAM-dependent methyltra 37.9 34 0.0012 33.4 5.1 36 685-722 79-114 (255)
243 3s1s_A Restriction endonucleas 37.5 15 0.00051 44.3 2.7 49 675-723 291-343 (878)
244 2l0b_A E3 ubiquitin-protein li 37.4 8.6 0.0003 32.9 0.6 44 275-342 39-82 (91)
245 3kv4_A PHD finger protein 8; e 37.3 7.5 0.00026 43.5 0.2 29 347-378 9-37 (447)
246 3gnl_A Uncharacterized protein 37.3 13 0.00046 38.1 2.0 25 697-721 17-41 (244)
247 3lec_A NADB-rossmann superfami 37.0 13 0.00046 37.7 2.0 25 697-721 17-41 (230)
248 3bxo_A N,N-dimethyltransferase 36.9 24 0.00081 33.7 3.7 33 690-722 29-61 (239)
249 3if2_A Aminotransferase; YP_26 36.5 8.1 0.00028 40.8 0.3 54 672-726 1-59 (444)
250 3g5t_A Trans-aconitate 3-methy 36.2 19 0.00066 36.3 3.1 51 669-723 8-58 (299)
251 3ggd_A SAM-dependent methyltra 36.2 22 0.00076 34.4 3.4 33 690-722 45-77 (245)
252 1i9g_A Hypothetical protein RV 36.0 33 0.0011 34.0 4.6 37 685-723 85-121 (280)
253 3mq2_A 16S rRNA methyltransfer 35.9 19 0.00066 34.3 2.9 24 699-722 25-48 (218)
254 2o57_A Putative sarcosine dime 35.7 28 0.00096 34.8 4.1 38 685-722 64-103 (297)
255 2ecv_A Tripartite motif-contai 35.4 27 0.00093 28.4 3.3 15 303-317 36-50 (85)
256 1u2z_A Histone-lysine N-methyl 35.4 36 0.0012 37.7 5.2 38 683-722 226-263 (433)
257 3gdh_A Trimethylguanosine synt 35.4 14 0.00047 35.9 1.7 32 689-721 67-98 (241)
258 2jtn_A LIM domain-binding prot 35.4 20 0.00068 34.4 2.8 86 213-312 57-147 (182)
259 3e23_A Uncharacterized protein 35.3 22 0.00077 33.5 3.2 34 685-722 31-64 (211)
260 2ift_A Putative methylase HI07 34.9 18 0.00061 34.7 2.4 29 689-718 42-70 (201)
261 3m4x_A NOL1/NOP2/SUN family pr 34.9 16 0.00055 40.7 2.4 25 699-723 103-127 (456)
262 2ecm_A Ring finger and CHY zin 34.6 17 0.00059 27.4 1.9 16 302-317 25-40 (55)
263 3dxy_A TRNA (guanine-N(7)-)-me 34.5 17 0.00059 35.6 2.3 26 697-722 30-55 (218)
264 1wim_A KIAA0161 protein; ring 34.4 22 0.00074 30.4 2.7 34 302-346 24-59 (94)
265 2k1p_A Zinc finger RAN-binding 34.3 25 0.00086 25.5 2.5 23 264-286 4-30 (33)
266 3dh0_A SAM dependent methyltra 33.8 37 0.0013 32.0 4.5 33 689-723 27-59 (219)
267 3kr9_A SAM-dependent methyltra 33.7 16 0.00055 36.9 2.0 24 698-721 12-35 (225)
268 1qyr_A KSGA, high level kasuga 33.5 29 0.001 35.2 3.9 35 683-720 5-39 (252)
269 4a0k_B E3 ubiquitin-protein li 33.4 10 0.00035 34.9 0.4 30 216-245 48-94 (117)
270 1o9g_A RRNA methyltransferase; 33.4 28 0.00096 34.2 3.6 23 700-722 50-72 (250)
271 2gpy_A O-methyltransferase; st 33.3 32 0.0011 33.2 4.0 57 648-722 19-75 (233)
272 2ecj_A Tripartite motif-contai 33.2 35 0.0012 25.9 3.4 16 302-317 31-46 (58)
273 1xtp_A LMAJ004091AAA; SGPP, st 32.9 23 0.00079 34.2 2.9 38 684-723 78-115 (254)
274 3jwg_A HEN1, methyltransferase 32.6 26 0.00089 33.3 3.2 38 683-722 13-50 (219)
275 1vyx_A ORF K3, K3RING; zinc-bi 32.6 11 0.00037 30.5 0.4 30 215-245 5-39 (60)
276 3vc1_A Geranyl diphosphate 2-C 32.3 36 0.0012 34.7 4.3 32 690-722 107-138 (312)
277 3sm3_A SAM-dependent methyltra 32.0 19 0.00067 34.1 2.1 26 696-721 25-50 (235)
278 2ysj_A Tripartite motif-contai 31.8 15 0.00052 28.7 1.2 15 303-317 37-51 (63)
279 3epz_A DNA (cytosine-5)-methyl 31.7 82 0.0028 33.0 6.8 95 65-160 127-230 (268)
280 1sqg_A SUN protein, FMU protei 31.6 33 0.0011 37.1 4.2 43 678-722 225-267 (429)
281 4dmg_A Putative uncharacterize 31.6 25 0.00086 38.1 3.2 27 695-721 208-234 (393)
282 2yqz_A Hypothetical protein TT 31.5 29 0.001 33.6 3.4 36 685-720 20-58 (263)
283 3bus_A REBM, methyltransferase 31.5 39 0.0013 33.1 4.3 34 687-722 49-82 (273)
284 1yb2_A Hypothetical protein TA 31.4 27 0.00092 35.0 3.2 31 690-722 101-131 (275)
285 2ysl_A Tripartite motif-contai 31.2 24 0.00081 28.3 2.2 15 303-317 37-51 (73)
286 3k1l_B Fancl; UBC, ring, RWD, 31.1 20 0.00069 39.2 2.2 32 214-245 306-344 (381)
287 2yxl_A PH0851 protein, 450AA l 31.0 21 0.00072 39.1 2.5 24 699-722 257-280 (450)
288 3gu3_A Methyltransferase; alph 30.9 37 0.0013 34.1 4.1 39 683-722 5-43 (284)
289 1nv8_A HEMK protein; class I a 30.9 27 0.00093 35.8 3.2 23 700-722 122-144 (284)
290 4dzr_A Protein-(glutamine-N5) 30.6 25 0.00087 32.7 2.7 24 700-723 29-52 (215)
291 3tka_A Ribosomal RNA small sub 30.5 14 0.00049 40.0 1.0 35 687-723 45-79 (347)
292 2esr_A Methyltransferase; stru 30.4 34 0.0012 31.3 3.4 22 700-721 30-51 (177)
293 3m6w_A RRNA methylase; rRNA me 30.3 18 0.00063 40.3 1.9 24 699-722 99-122 (464)
294 2as0_A Hypothetical protein PH 30.1 26 0.00088 37.4 2.9 27 695-721 211-237 (396)
295 3hnr_A Probable methyltransfer 30.0 47 0.0016 31.3 4.5 22 700-721 44-65 (220)
296 2frx_A Hypothetical protein YE 29.8 22 0.00076 39.6 2.4 31 692-722 108-138 (479)
297 2p7i_A Hypothetical protein; p 29.7 30 0.001 32.9 3.1 32 689-721 31-62 (250)
298 1boo_A Protein (N-4 cytosine-s 29.0 27 0.00092 36.6 2.8 31 683-715 236-266 (323)
299 1uwv_A 23S rRNA (uracil-5-)-me 28.9 33 0.0011 37.4 3.5 23 699-721 284-306 (433)
300 2yvl_A TRMI protein, hypotheti 28.8 50 0.0017 31.8 4.5 33 686-720 78-110 (248)
301 3pfg_A N-methyltransferase; N, 28.1 32 0.0011 33.8 3.0 32 689-720 38-69 (263)
302 3kkz_A Uncharacterized protein 28.1 39 0.0013 33.2 3.7 36 685-721 31-66 (267)
303 2r3s_A Uncharacterized protein 27.5 45 0.0015 33.9 4.1 36 687-722 151-186 (335)
304 3m33_A Uncharacterized protein 27.5 28 0.00096 33.6 2.4 24 698-721 45-68 (226)
305 2bm8_A Cephalosporin hydroxyla 27.3 60 0.0021 32.0 4.9 30 701-730 81-110 (236)
306 3lpm_A Putative methyltransfer 27.0 23 0.00077 35.2 1.7 23 699-721 46-69 (259)
307 2fca_A TRNA (guanine-N(7)-)-me 26.6 36 0.0012 32.9 3.0 23 700-722 37-59 (213)
308 2d8s_A Cellular modulator of i 26.5 29 0.00099 29.5 2.0 27 216-245 15-50 (80)
309 2avn_A Ubiquinone/menaquinone 26.4 40 0.0014 33.2 3.4 33 686-721 42-74 (260)
310 1o54_A SAM-dependent O-methylt 26.1 57 0.002 32.5 4.5 33 688-722 101-133 (277)
311 3dlc_A Putative S-adenosyl-L-m 26.0 43 0.0015 31.1 3.4 32 688-722 33-64 (219)
312 3fzg_A 16S rRNA methylase; met 26.0 16 0.00053 36.9 0.3 40 680-719 25-67 (200)
313 1jm7_A BRCA1, breast cancer ty 25.9 26 0.0009 30.3 1.7 16 302-317 37-52 (112)
314 2yl5_A Beta-N-acetylhexosamini 25.7 27 0.00094 38.6 2.2 23 679-701 18-48 (442)
315 1qbj_A Protein (double-strande 25.7 53 0.0018 28.1 3.5 49 570-641 8-58 (81)
316 1rut_X Flinc4, fusion protein 25.6 17 0.00057 35.2 0.4 85 214-312 3-97 (188)
317 3f4k_A Putative methyltransfer 25.6 67 0.0023 31.1 4.8 36 686-722 32-67 (257)
318 1wxx_A TT1595, hypothetical pr 25.5 47 0.0016 35.3 3.9 21 701-721 209-229 (382)
319 2ecy_A TNF receptor-associated 25.5 31 0.0011 27.3 1.9 16 302-317 31-46 (66)
320 2ozv_A Hypothetical protein AT 25.4 33 0.0011 34.3 2.6 25 699-723 34-58 (260)
321 1pjz_A Thiopurine S-methyltran 25.4 51 0.0017 31.5 3.8 32 687-720 10-41 (203)
322 1yzh_A TRNA (guanine-N(7)-)-me 25.4 41 0.0014 32.1 3.1 23 700-722 40-62 (214)
323 3tm4_A TRNA (guanine N2-)-meth 25.3 53 0.0018 34.9 4.3 28 690-720 209-236 (373)
324 2ecw_A Tripartite motif-contai 25.2 29 0.00098 28.2 1.7 16 302-317 35-50 (85)
325 1y8c_A S-adenosylmethionine-de 25.1 37 0.0012 32.4 2.7 30 691-720 27-56 (246)
326 3g7q_A Valine-pyruvate aminotr 25.1 35 0.0012 35.3 2.8 54 672-726 1-58 (417)
327 2egp_A Tripartite motif-contai 25.0 37 0.0013 27.4 2.4 16 303-318 29-44 (79)
328 1x4j_A Ring finger protein 38; 24.9 26 0.00088 28.5 1.4 30 215-245 22-54 (75)
329 2y43_A E3 ubiquitin-protein li 24.8 27 0.00091 30.0 1.5 16 302-317 39-54 (99)
330 3ccf_A Cyclopropane-fatty-acyl 24.6 93 0.0032 30.8 5.7 29 691-721 49-77 (279)
331 2ecl_A Ring-box protein 2; RNF 24.6 20 0.00069 30.0 0.7 17 229-245 42-58 (81)
332 4fsd_A Arsenic methyltransfera 24.6 36 0.0012 36.1 2.8 25 699-723 81-105 (383)
333 2kw5_A SLR1183 protein; struct 24.4 1.2E+02 0.0041 28.1 6.1 30 686-720 19-48 (202)
334 1xdz_A Methyltransferase GIDB; 24.2 93 0.0032 30.3 5.5 22 699-720 68-89 (240)
335 3cc8_A Putative methyltransfer 24.0 36 0.0012 31.9 2.4 29 690-721 24-52 (230)
336 2xjy_A Rhombotin-2; oncoprotei 23.8 19 0.00065 32.4 0.4 83 217-312 3-94 (131)
337 1jak_A Beta-N-acetylhexosamini 23.8 52 0.0018 37.2 4.0 71 614-702 110-198 (512)
338 3dpl_R Ring-box protein 1; ubi 23.7 17 0.00058 32.6 0.0 13 233-245 71-83 (106)
339 3pfq_A PKC-B, PKC-beta, protei 23.6 41 0.0014 38.7 3.2 92 278-378 50-147 (674)
340 3lrq_A E3 ubiquitin-protein li 23.5 25 0.00084 30.6 1.0 16 302-317 39-54 (100)
341 3fl2_A E3 ubiquitin-protein li 23.2 22 0.00076 31.8 0.7 16 302-317 68-83 (124)
342 3l11_A E3 ubiquitin-protein li 23.2 33 0.0011 30.2 1.8 15 303-317 32-46 (115)
343 3dmg_A Probable ribosomal RNA 22.9 44 0.0015 36.0 3.1 33 688-720 220-252 (381)
344 2vdv_E TRNA (guanine-N(7)-)-me 22.9 39 0.0014 33.1 2.5 25 698-722 46-70 (246)
345 3dtn_A Putative methyltransfer 22.8 70 0.0024 30.5 4.3 34 689-723 33-66 (234)
346 4a0k_B E3 ubiquitin-protein li 22.6 18 0.00062 33.3 0.0 16 302-317 82-97 (117)
347 2fpo_A Methylase YHHF; structu 22.4 55 0.0019 31.2 3.4 18 701-718 54-71 (202)
348 2yl6_A Beta-N-acetylhexosamini 22.3 37 0.0013 37.4 2.4 23 679-701 15-45 (434)
349 3ofk_A Nodulation protein S; N 22.1 42 0.0014 31.6 2.5 37 684-721 35-71 (216)
350 3pl5_A SMU_165, putative uncha 22.1 99 0.0034 32.9 5.5 99 624-725 163-285 (320)
351 1ri5_A MRNA capping enzyme; me 22.0 42 0.0014 33.1 2.6 25 697-721 60-84 (298)
352 1zx0_A Guanidinoacetate N-meth 21.8 45 0.0016 32.3 2.7 22 699-720 58-79 (236)
353 3vk6_A E3 ubiquitin-protein li 21.6 36 0.0012 30.9 1.7 37 265-310 36-73 (101)
354 2ect_A Ring finger protein 126 21.5 64 0.0022 26.1 3.2 32 213-245 12-46 (78)
355 3bt7_A TRNA (uracil-5-)-methyl 21.5 46 0.0016 35.3 2.9 20 701-720 213-232 (369)
356 3m70_A Tellurite resistance pr 21.5 48 0.0017 32.9 2.9 21 701-721 120-140 (286)
357 1yht_A DSPB; beta barrel, hydr 21.3 38 0.0013 36.5 2.2 24 679-702 26-57 (367)
358 3bkw_A MLL3908 protein, S-aden 21.3 60 0.002 30.9 3.4 31 690-722 34-64 (243)
359 2ep4_A Ring finger protein 24; 21.2 32 0.0011 27.7 1.2 15 303-317 35-49 (74)
360 3gh5_A HEX1, beta-hexosaminida 21.0 62 0.0021 36.8 3.9 74 614-702 134-223 (525)
361 2ct0_A Non-SMC element 1 homol 20.5 28 0.00096 29.5 0.8 31 342-378 15-45 (74)
362 2p8j_A S-adenosylmethionine-de 20.4 65 0.0022 30.0 3.4 31 685-716 8-38 (209)
363 2ckl_B Ubiquitin ligase protei 20.4 38 0.0013 31.8 1.7 16 302-317 71-86 (165)
364 2zfu_A Nucleomethylin, cerebra 20.4 43 0.0015 31.6 2.1 30 689-719 56-85 (215)
No 1
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=123.23 Aligned_cols=102 Identities=25% Similarity=0.692 Sum_probs=78.5
Q ss_pred cCCCcccccccCCCCce---eecCCccccccccccccCccccccccCCcccccCCCCcccCccccccCcccccccccCCC
Q 004169 212 DENYFAVCAICDDGGDV---TFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSS 288 (770)
Q Consensus 212 dd~~d~VC~IC~~gGeL---L~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~qhqCfvCgklGss 288 (770)
...++++|.+|+++|++ |.|+ .|+++||+.|+ +++..++ +...|+|++|. .|.+|++.+.
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~-~C~~~~H~~Cl----------~~~~~~~-~~~~W~C~~C~----~C~~C~~~~~- 65 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCT-TCGQHYHGMCL----------DIAVTPL-KRAGWQCPECK----VCQNCKQSGE- 65 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECS-SSCCEECTTTT----------TCCCCTT-TSTTCCCTTTC----CCTTTCCCSC-
T ss_pred CCCCCCCCcCCCCCCCCcCCeECC-CCCCCcChHHh----------CCccccc-cccCccCCcCC----cccccCccCC-
Confidence 35678999999999986 9999 59999999984 3333333 35799999998 5999998763
Q ss_pred CCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCCcccccCcCC
Q 004169 289 DKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQS 351 (770)
Q Consensus 289 d~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPlH~C~~C~~~ 351 (770)
...++.| ..|++.||..|+.+.+.. +. ...|.|| .|..|..+
T Consensus 66 ----~~~ll~C--d~C~~~yH~~Cl~ppl~~------------~P-~g~W~C~--~C~~c~~g 107 (111)
T 2ysm_A 66 ----DSKMLVC--DTCDKGYHTFCLQPVMKS------------VP-TNGWKCK--NCRICISG 107 (111)
T ss_dssp ----CTTEEEC--SSSCCEEEGGGSSSCCSS------------CC-SSCCCCH--HHHCCSCS
T ss_pred ----CCCeeEC--CCCCcHHhHHhcCCcccc------------CC-CCCcCCc--CCcCcCCC
Confidence 3579999 799999999999865421 11 2479897 77777664
No 2
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.07 E-value=1.3e-10 Score=106.47 Aligned_cols=78 Identities=26% Similarity=0.537 Sum_probs=64.8
Q ss_pred CCCcccccccCCCCceeecCC-ccccccccccccCccccccccCCcccccCCCCcccCccccccCcccccccccCCCCCC
Q 004169 213 ENYFAVCAICDDGGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKS 291 (770)
Q Consensus 213 d~~d~VC~IC~~gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~qhqCfvCgklGssd~s 291 (770)
..++++|.+|.++|+||+||+ .|+++||+.| ||++.. |.+.|+|+.|. |.+|++..
T Consensus 12 ~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~C----------l~L~~~---P~g~W~Cp~c~-----C~~C~k~~----- 68 (107)
T 4gne_A 12 QMHEDYCFQCGDGGELVMCDKKDCPKAYHLLC----------LNLTQP---PYGKWECPWHQ-----CDECSSAA----- 68 (107)
T ss_dssp CSSCSSCTTTCCCSEEEECCSTTCCCEECTGG----------GTCSSC---CSSCCCCGGGB-----CTTTCSBC-----
T ss_pred CCCCCCCCcCCCCCcEeEECCCCCCccccccc----------CcCCcC---CCCCEECCCCC-----CCcCCCCC-----
Confidence 456789999999999999995 5999999997 566543 46899999986 99999742
Q ss_pred CCCceeeccCCCcCCcCcchhhcccCCC
Q 004169 292 SSQEVFPCVSATCGQFYHPECVSKLLHP 319 (770)
Q Consensus 292 s~~eV~kCsv~~CGrfYH~~CL~~~~~p 319 (770)
.+.| ..|.+.||..|+...+..
T Consensus 69 ----~~~C--~~Cp~sfC~~c~~g~l~~ 90 (107)
T 4gne_A 69 ----VSFC--EFCPHSFCKDHEKGALVP 90 (107)
T ss_dssp ----CEEC--SSSSCEECTTTCTTSCEE
T ss_pred ----CcCc--CCCCcchhhhccCCccee
Confidence 2889 799999999999876643
No 3
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.97 E-value=6.8e-10 Score=101.85 Aligned_cols=91 Identities=23% Similarity=0.560 Sum_probs=66.4
Q ss_pred CcccccccccCCCCCC-CCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCCc-ccccCcCCcc
Q 004169 276 EHQCFACGMLGSSDKS-SSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSED 353 (770)
Q Consensus 276 qhqCfvCgklGssd~s-s~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPlH-~C~~C~~~ed 353 (770)
.+.|.+|...+..+.. .+.+++.| ..|++.||+.|+...+ ++...+ ....|.||.. +|.+|+..+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C--~~C~~~~H~~Cl~~~~---------~~~~~~-~~~~W~C~~C~~C~vC~~~~~ 72 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISC--ADCGNSGHPSCLKFSP---------ELTVRV-KALRWQCIECKTCSSCRDQGK 72 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEEC--TTTCCEECHHHHTCCH---------HHHHHH-HTSCCCCTTTCCBTTTCCCCC
T ss_pred CccccccCCchhhCcCCCchhceEh--hhcCCCCCCchhcCCH---------HHHHHh-hccccccccCCccccccCcCC
Confidence 4568888765433221 24689999 7899999999997432 122223 3468999998 8999998643
Q ss_pred CccCccceeeccccccccccccCCCCcc
Q 004169 354 MNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 354 k~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.+.+|+.|+.|+++||..||.+++.
T Consensus 73 ---~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 73 ---NADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp ---TTCCCEECTTTCCEECGGGCSSCCS
T ss_pred ---CccceEEcCCCCCeeecccCCCCCC
Confidence 2347999999999999999988764
No 4
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.92 E-value=4e-10 Score=103.77 Aligned_cols=79 Identities=25% Similarity=0.621 Sum_probs=60.7
Q ss_pred ccccccCCC----------CceeecCCccccccccccccCccccccccCCccc--ccCCCCcccCccccccCcccccccc
Q 004169 217 AVCAICDDG----------GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFACGM 284 (770)
Q Consensus 217 ~VC~IC~~g----------GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~--ev~~~~~W~C~eC~~~qhqCfvCgk 284 (770)
++|.+|..+ |+||.|++ |+++||+.|+ +++.. +..+...|+|++|. .|.+|+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~-C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~~C~~ 66 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD-CGRSGHPTCL----------QFTLNMTEAVKTYKWQCIECK----SCILCGT 66 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS-SCCEECTTTT----------TCCHHHHHHHHHTTCCCGGGC----CCTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC-CCCccchhhC----------CChhhhhhccCCCccCccccC----ccCcccc
Confidence 679999654 48999995 9999999984 33311 11135789999997 4999997
Q ss_pred cCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 285 LGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 285 lGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
.+. ...++.| ..|.+.||..|+.+.+
T Consensus 67 ~~~-----~~~ll~C--d~C~~~yH~~Cl~ppl 92 (114)
T 2kwj_A 67 SEN-----DDQLLFC--DDCDRGYHMYCLNPPV 92 (114)
T ss_dssp CTT-----TTTEEEC--SSSCCEEETTTSSSCC
T ss_pred cCC-----CCceEEc--CCCCccccccccCCCc
Confidence 542 4689999 7999999999998643
No 5
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.90 E-value=2e-09 Score=98.14 Aligned_cols=82 Identities=32% Similarity=0.738 Sum_probs=65.4
Q ss_pred CcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCCc-ccccCcCCccC
Q 004169 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 354 (770)
Q Consensus 276 qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPlH-~C~~C~~~edk 354 (770)
...|.+|+..|. ..+++.| ..|++.||+.|+.....+. ....|.||.. .|.+|+..++.
T Consensus 7 ~~~C~~C~~~g~-----~~~ll~C--~~C~~~~H~~Cl~~~~~~~-------------~~~~W~C~~C~~C~~C~~~~~~ 66 (111)
T 2ysm_A 7 GANCAVCDSPGD-----LLDQFFC--TTCGQHYHGMCLDIAVTPL-------------KRAGWQCPECKVCQNCKQSGED 66 (111)
T ss_dssp CSCBTTTCCCCC-----TTTSEEC--SSSCCEECTTTTTCCCCTT-------------TSTTCCCTTTCCCTTTCCCSCC
T ss_pred CCCCcCCCCCCC-----CcCCeEC--CCCCCCcChHHhCCccccc-------------cccCccCCcCCcccccCccCCC
Confidence 457999987663 2467899 7999999999998754331 2357999986 69999987653
Q ss_pred ccCccceeeccccccccccccCCCCcc
Q 004169 355 NVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 355 ~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.+|+.|+.|+++||..||.+++.
T Consensus 67 ----~~ll~Cd~C~~~yH~~Cl~ppl~ 89 (111)
T 2ysm_A 67 ----SKMLVCDTCDKGYHTFCLQPVMK 89 (111)
T ss_dssp ----TTEEECSSSCCEEEGGGSSSCCS
T ss_pred ----CCeeECCCCCcHHhHHhcCCccc
Confidence 47999999999999999988764
No 6
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.82 E-value=1.6e-09 Score=99.33 Aligned_cols=82 Identities=21% Similarity=0.540 Sum_probs=62.2
Q ss_pred CcccccccCC---------CCceeecCCccccccccccccCccccccccCCccc--ccCCCCcccCccccccCccccccc
Q 004169 215 YFAVCAICDD---------GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQA--QIDAVPNFLCQNCVYQEHQCFACG 283 (770)
Q Consensus 215 ~d~VC~IC~~---------gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~--ev~~~~~W~C~eC~~~qhqCfvCg 283 (770)
...+|.+|.. +|+||.|++ |.++||+.|+ +++.. +..+...|+|++|. .|.+|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl----------~~~~~~~~~~~~~~W~C~~C~----~C~vC~ 68 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCL----------KFSPELTVRVKALRWQCIECK----TCSSCR 68 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHH----------TCCHHHHHHHHTSCCCCTTTC----CBTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhh-cCCCCCCchh----------cCCHHHHHHhhccccccccCC----cccccc
Confidence 4678999954 458999995 9999999974 33211 11136799999998 499999
Q ss_pred ccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 284 MLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 284 klGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
..|. ....++.| ..|.+.||..|+.+.+
T Consensus 69 ~~~~----~~~~ll~C--d~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 69 DQGK----NADNMLFC--DSCDRGFHMECCDPPL 96 (112)
T ss_dssp CCCC----TTCCCEEC--TTTCCEECGGGCSSCC
T ss_pred CcCC----CccceEEc--CCCCCeeecccCCCCC
Confidence 7653 23579999 7899999999997543
No 7
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.70 E-value=1.6e-08 Score=92.72 Aligned_cols=75 Identities=25% Similarity=0.650 Sum_probs=59.9
Q ss_pred cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCCcccccCcCCccCcc
Q 004169 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVHKCFVCQQSEDMNV 356 (770)
Q Consensus 277 hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPlH~C~~C~~~edk~~ 356 (770)
..|++|+. +++++.|....|.+.||..|+.....| ...|.||.|.|..|+....
T Consensus 16 ~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~~~P---------------~g~W~Cp~c~C~~C~k~~~--- 69 (107)
T 4gne_A 16 DYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLTQPP---------------YGKWECPWHQCDECSSAAV--- 69 (107)
T ss_dssp SSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCSSCC---------------SSCCCCGGGBCTTTCSBCC---
T ss_pred CCCCcCCC--------CCcEeEECCCCCCcccccccCcCCcCC---------------CCCEECCCCCCCcCCCCCC---
Confidence 35888873 358999965689999999999832222 2579999999999998652
Q ss_pred CccceeeccccccccccccCCCCccc
Q 004169 357 EDLQLAICRRCPKAYHRKCLPTEITF 382 (770)
Q Consensus 357 ~e~qLi~C~RCP~AYH~kCLP~~~~f 382 (770)
+.|..||.|||.+|++..+..
T Consensus 70 -----~~C~~Cp~sfC~~c~~g~l~~ 90 (107)
T 4gne_A 70 -----SFCEFCPHSFCKDHEKGALVP 90 (107)
T ss_dssp -----EECSSSSCEECTTTCTTSCEE
T ss_pred -----cCcCCCCcchhhhccCCccee
Confidence 789999999999999887643
No 8
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.69 E-value=1.1e-08 Score=84.70 Aligned_cols=52 Identities=27% Similarity=0.729 Sum_probs=41.1
Q ss_pred cCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 212 dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
++.++.+|.+|.++|+||+||+ |.++||+.|+.. .++. + +.+.|+|+.|..+
T Consensus 5 ~d~~~~~C~vC~~~g~ll~Cd~-C~~~fH~~Cl~p--------pl~~--~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 5 SDHHMEFCRVCKDGGELLCCDT-CPSSYHIHCLNP--------PLPE--I-PNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCSSCTTTCCCSSCBCCSS-SCCCBCSSSSSS--------CCSS--C-CSSCCCCTTTTTT
T ss_pred ccCCCCcCCCCCCCCCEEEcCC-CCHHHcccccCC--------CcCc--C-CCCccCChhhcCc
Confidence 3567899999999999999995 999999998432 2332 2 4689999999853
No 9
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.67 E-value=1.9e-08 Score=92.62 Aligned_cols=88 Identities=31% Similarity=0.669 Sum_probs=62.2
Q ss_pred ccccccccCCCCC--CCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCCc-ccccCcCCccC
Q 004169 278 QCFACGMLGSSDK--SSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPVH-KCFVCQQSEDM 354 (770)
Q Consensus 278 qCfvCgklGssd~--ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPlH-~C~~C~~~edk 354 (770)
.|.+|...+..++ ....+++.| ..|++.||+.|+...+ ++...+ ....|.||.- .|.+|+..++
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C--~~C~~~~H~~Cl~~~~---------~~~~~~-~~~~W~C~~C~~C~~C~~~~~- 69 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSC--ADCGRSGHPTCLQFTL---------NMTEAV-KTYKWQCIECKSCILCGTSEN- 69 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEEC--SSSCCEECTTTTTCCH---------HHHHHH-HHTTCCCGGGCCCTTTTCCTT-
T ss_pred cCccCCCCccccccCCCCCCCeEe--CCCCCccchhhCCChh---------hhhhcc-CCCccCccccCccCcccccCC-
Confidence 4666654332111 124689999 6899999999997432 121122 2357999976 7999988654
Q ss_pred ccCccceeeccccccccccccCCCCcc
Q 004169 355 NVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 355 ~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
+..|+.|+.|+++||..||.+++.
T Consensus 70 ---~~~ll~Cd~C~~~yH~~Cl~ppl~ 93 (114)
T 2kwj_A 70 ---DDQLLFCDDCDRGYHMYCLNPPVA 93 (114)
T ss_dssp ---TTTEEECSSSCCEEETTTSSSCCS
T ss_pred ---CCceEEcCCCCccccccccCCCcc
Confidence 348999999999999999998764
No 10
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.64 E-value=1.1e-08 Score=85.65 Aligned_cols=51 Identities=31% Similarity=0.778 Sum_probs=40.6
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 213 ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 213 d~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
+.++++|.+|.++|+||+||+ |.++||+.|+.+ .++. + +.+.|+|+.|..+
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~-C~~~fH~~Cl~p--------pl~~--~-P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDG-CPRAFHLACLSP--------PLRE--I-PSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSS-CCCEECTTTSSS--------CCSS--C-CSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCCCEEEcCC-CChhhcccccCC--------CcCc--C-CCCCeECccccCc
Confidence 456899999999999999995 999999998432 2332 2 4689999999864
No 11
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=1.6e-08 Score=83.66 Aligned_cols=52 Identities=21% Similarity=0.671 Sum_probs=41.1
Q ss_pred cCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 212 dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
++.++.+|.+|.++|+||.|| .|.++||+.|+. +.++. + +.+.|+|+.|...
T Consensus 7 ~~~~~~~C~vC~~~g~ll~CD-~C~~~fH~~Cl~--------p~l~~--~-p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQGGEIILCD-TCPRAYHMVCLD--------PDMEK--A-PEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCCSSEEECS-SSSCEEEHHHHC--------TTCCS--C-CCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCCCcEEECC-CCChhhhhhccC--------CCCCC--C-CCCceECcccccc
Confidence 355678999999999999999 599999999743 22332 2 4689999999864
No 12
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.59 E-value=3.3e-08 Score=87.79 Aligned_cols=52 Identities=19% Similarity=0.554 Sum_probs=42.0
Q ss_pred ccCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
..+.++++|.+|+++|+||+|| .|.++||+.|+.+ +++.. |.+.|+|+.|..
T Consensus 20 ~~d~n~~~C~vC~~~g~LL~CD-~C~~~fH~~Cl~P--------pL~~~---P~g~W~C~~C~~ 71 (88)
T 1fp0_A 20 TLDDSATICRVCQKPGDLVMCN-QCEFCFHLDCHLP--------ALQDV---PGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSSCCSSSCSSSCCEECT-TSSCEECTTSSST--------TCCCC---CSSSCCCCSCCC
T ss_pred ccCCCCCcCcCcCCCCCEEECC-CCCCceecccCCC--------CCCCC---cCCCcCCccccC
Confidence 4466788999999999999999 5999999998532 44332 468999999984
No 13
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.57 E-value=2e-08 Score=82.54 Aligned_cols=51 Identities=24% Similarity=0.564 Sum_probs=40.5
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 213 ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 213 d~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
+.++.+|.+|+++|+||.|| .|.++||+.|+.+ .++. + +.+.|+|+.|...
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd-~C~~~fH~~Cl~p--------pl~~--~-p~g~W~C~~C~~~ 52 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCD-TCSRVYHLDCLDP--------PLKT--I-PKGMWICPRCQDQ 52 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECS-SSSCEECGGGSSS--------CCSS--C-CCSCCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCcEEEcC-CCCcCEECCcCCC--------CcCC--C-CCCceEChhccCh
Confidence 45789999999999999999 5999999997432 2332 2 4689999999753
No 14
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.57 E-value=2.4e-08 Score=100.29 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=41.4
Q ss_pred ccCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
+++.++++|.+|++||+||+||| |.++||..|+. .+++.. |.+.|+|+.|..
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl~--------p~l~~~---p~~~W~C~~C~~ 53 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCEK-CPKVFHLTCHV--------PTLLSF---PSGDWICTFCRD 53 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECSS-SSCEECTTTSS--------SCCSSC---CSSCCCCTTTSC
T ss_pred CCCCCCCCCCCCCCCCceEEcCC-CCCccCCccCC--------CCCCCC---CCCCEEeCceeC
Confidence 45667899999999999999996 99999999853 233322 468999999985
No 15
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=5.4e-08 Score=78.99 Aligned_cols=50 Identities=22% Similarity=0.593 Sum_probs=40.0
Q ss_pred CCCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 213 ENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 213 d~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
+.++.+|.+|.++|+||.|| .|.++||+.|+.+ .++. + +.+.|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd-~C~~~~H~~Cl~p--------pl~~--~-p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCD-TCSRVYHLDCLDP--------PLKT--I-PKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECS-SSSCEECSSSSSS--------CCCS--C-CCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcC-CCCcceECccCCC--------CcCC--C-CCCceEChhhhC
Confidence 56688999999999999999 5999999998432 2332 2 468999999974
No 16
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.48 E-value=6.5e-08 Score=95.25 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=40.2
Q ss_pred CCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
.++++|.+|++||+||+||+ |.++||..|+. .+++.. +.+.|+|+.|...
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~-C~~~~H~~C~~--------p~l~~~---p~~~W~C~~C~~~ 51 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEK-CPKVFHLSCHV--------PTLTNF---PSGEWICTFCRDL 51 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSS-SSCEECTTTSS--------SCCSSC---CSSCCCCTTTSCS
T ss_pred CCCCccccCCCCCeeeecCC-CCcccCccccC--------CCCCCC---CCCCEECccccCc
Confidence 46899999999999999996 99999999853 233322 4688999999853
No 17
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=79.54 Aligned_cols=49 Identities=29% Similarity=0.483 Sum_probs=39.0
Q ss_pred CCcccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 214 NYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 214 ~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
..+..|.+|+++|+||+||+ |.++||+.|+. .+++. + +.+.|+|+.|..
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~-C~~~~H~~Cl~--------P~l~~--~-P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTH-CAAAFHWRCHF--------PAGTS--R-PGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSS-SCCEECHHHHC--------TTTCC--C-CSSSCCCTTTTT
T ss_pred CCCCCcCCCCCCCeEEECCC-CCCceecccCC--------CccCc--C-CCCCEECccccC
Confidence 34577999999999999995 99999999853 23433 2 468999999974
No 18
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.25 E-value=2.6e-07 Score=76.88 Aligned_cols=55 Identities=25% Similarity=0.704 Sum_probs=41.3
Q ss_pred CCCcccccccCCC-----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccccC
Q 004169 213 ENYFAVCAICDDG-----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQE 276 (770)
Q Consensus 213 d~~d~VC~IC~~g-----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~q 276 (770)
+.++.+|.+|..+ ++||.|| .|.++||+.|+. ..++...+.+.+.|+|+.|..++
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd-~C~~~~H~~C~~--------p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICD-KCGQGYHQLCHT--------PHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECS-SSCCEEETTTSS--------SCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC-CCChHHHhhhCC--------CcccccccCCCCCEECCCCcCcc
Confidence 4567899999987 8899999 599999999743 22333222357899999998643
No 19
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.25 E-value=2e-07 Score=89.35 Aligned_cols=56 Identities=25% Similarity=0.581 Sum_probs=42.4
Q ss_pred cCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcc-ccc-CCCCcccCccccc
Q 004169 212 DENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQ-AQI-DAVPNFLCQNCVY 274 (770)
Q Consensus 212 dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~-~ev-~~~~~W~C~eC~~ 274 (770)
++.++++|.+|.+||+||+|| .|+|+||..|+.. .|+... .++ .+.+.|.|+.|..
T Consensus 59 ~Dg~~d~C~vC~~GG~LlcCD-~Cpr~Fh~~Cl~p------~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCILR------NLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCSSEEECS-SSCCEEEHHHHHH------HTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCCCcEEeCC-CCCCeeeHhhcCC------CCChhhhhhcccCCCCCEeecccC
Confidence 477889999999999999999 6999999998652 133111 111 2578999999873
No 20
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.25 E-value=3.1e-07 Score=81.29 Aligned_cols=48 Identities=35% Similarity=0.737 Sum_probs=39.1
Q ss_pred CCcccccccCCCC-----ceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDDGG-----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~gG-----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
.++.+|.+|.++| +||+||+ |.++||+.| +|+.. + |.+.|+|+.|...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~-C~~~fH~~C----------l~p~~--v-P~g~W~C~~C~~~ 75 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDM-CNLAVHQEC----------YGVPY--I-PEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSS-SCCCCCHHH----------HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCC-CCchhhccc----------CCCCc--c-CCCceECccccCc
Confidence 3568999999987 8999995 999999997 45543 2 5689999999853
No 21
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.22 E-value=6.4e-07 Score=89.14 Aligned_cols=49 Identities=20% Similarity=0.558 Sum_probs=39.7
Q ss_pred cccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccccC
Q 004169 216 FAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQE 276 (770)
Q Consensus 216 d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~q 276 (770)
++.|.+|+++|+||+||| |.++||..|+. .+++.. +.+.|+|+.|....
T Consensus 2 ~~~C~~C~~~g~ll~Cd~-C~~~~H~~Cl~--------p~l~~~---p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQ-CEFCFHLDCHL--------PALQDV---PGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTT-TCCBCCSTTST--------TCCSSC---CCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCC-CCchhccccCC--------CCcccC---CCCCCCCcCccCCC
Confidence 578999999999999995 99999999853 234432 46899999998653
No 22
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.20 E-value=3.4e-07 Score=78.17 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=39.7
Q ss_pred CCCcccccccCCCC-----ceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 213 ENYFAVCAICDDGG-----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 213 d~~d~VC~IC~~gG-----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
...+.+|.+|.+++ +||.|| .|.++||+.| +|++. + |.+.|+|+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD-~C~~~~H~~C----------l~~~~--v-P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCD-MCNLAVHQEC----------YGVPY--I-PEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECS-SSCCEEEHHH----------HTCSS--C-CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECC-CCCCcccccc----------CCCCc--C-CCCCcCCccCcCc
Confidence 45678999999876 799999 5999999997 55543 2 5689999999853
No 23
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=7.9e-07 Score=79.26 Aligned_cols=53 Identities=23% Similarity=0.578 Sum_probs=40.4
Q ss_pred ccCCCcccccccCCCCc---eeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 211 KDENYFAVCAICDDGGD---VTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGe---LL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
.+..++.+|.+|.++++ ||+||+ |.++||+.|+.+ .++ .+ |.+.|+|+.|..+
T Consensus 11 ~~~~~~~~C~vC~~~~~~~~ll~CD~-C~~~~H~~Cl~P--------pl~--~~-P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDDKLLFCDG-CDDNYHIFCLLP--------PLP--EI-PRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGGGCEECTT-TCCEECSSSSSS--------CCS--SC-CSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCCCEEEcCC-CCchhccccCCC--------Ccc--cC-CCCCcCCccCcCc
Confidence 34556788999999875 999995 999999998432 233 23 4689999999854
No 24
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.11 E-value=9.5e-07 Score=70.03 Aligned_cols=45 Identities=22% Similarity=0.617 Sum_probs=35.0
Q ss_pred cccccCCCC---ceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 218 VCAICDDGG---DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 218 VC~IC~~gG---eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
.|.+|+++| +||.|| .|.++||+.|+. .+++.. |.+.|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~--------p~l~~~---P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLR--------PALYEV---PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHC--------TTCCSC---CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCC--------CCcCCC---CCCcEECcCccc
Confidence 699999765 699999 599999999853 244432 468999999974
No 25
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.10 E-value=7.8e-07 Score=75.79 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCcccccccCCC--C-ceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 213 ENYFAVCAICDDG--G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 213 d~~d~VC~IC~~g--G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
.....+|.+|..+ | .+|.||+ |.++||..| +|++..+. +.+.|+|+.|..+
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~-C~~wfH~~C----------v~~~~~~~-~~~~w~C~~C~~~ 68 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDD-CDDWYHWPC----------VGIMAAPP-EEMQWFCPKCANK 68 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSS-SSSEEEHHH----------HTCSSCCC-SSSCCCCTTTHHH
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCC-CCccccccc----------CCCCccCC-CCCCEEChhccCc
Confidence 3446789999876 3 6999995 999999997 56665443 3579999999854
No 26
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.07 E-value=3.2e-06 Score=72.10 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=37.6
Q ss_pred CCcccccccCC--CCceeecCC-ccc-cccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
....+| +|.+ .|+||.||+ .|. .+||..| +|++.. +.+.|+|+.|..+
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~C----------vgl~~~---p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTK---PRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTT----------TTCSSC---CSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEeccc----------CCcCcC---CCCCEECCCCCcc
Confidence 345788 8998 689999994 288 6999997 677754 3578999999854
No 27
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.05 E-value=5.6e-07 Score=85.05 Aligned_cols=58 Identities=24% Similarity=0.572 Sum_probs=43.3
Q ss_pred ccCCCcccccccCCCCceeecCCccccccccccccCccccccccCCcc-ccc-CCCCcccCcccccc
Q 004169 211 KDENYFAVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQ-AQI-DAVPNFLCQNCVYQ 275 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~-~ev-~~~~~W~C~eC~~~ 275 (770)
++|.++++|++|.+||+|++|| .|+|+||..|+.. .+|... ..+ .+.+.|.|..|...
T Consensus 52 d~Dg~~~~C~vC~dGG~LlcCd-~Cpr~Fc~~Cl~~------~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEGGNLICCD-FCHNAFCKKCILR------NLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCCSEEEECS-SSSCEEEHHHHHH------HTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCCCeeEecC-CCchhhhHHHhCC------CcchhHHHHhccCCCCeEcCCcCCH
Confidence 3578889999999999999999 6999999998653 123111 112 24789999999743
No 28
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.04 E-value=5.8e-06 Score=73.86 Aligned_cols=48 Identities=27% Similarity=0.651 Sum_probs=37.6
Q ss_pred CCcccccccCC--CCceeecCC-ccc-cccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
....+| +|.+ .|+||.||+ .|. .+||..| +|++.. +.+.|+|+.|..+
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~C----------Vgl~~~---p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTK---PRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTT----------TTCSSC---CCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEeccc----------CCcCcC---CCCCEECcCccCc
Confidence 345778 9998 689999994 287 6999997 677654 3578999999753
No 29
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.02 E-value=1.2e-06 Score=77.49 Aligned_cols=52 Identities=19% Similarity=0.480 Sum_probs=39.0
Q ss_pred CcccccccCCC-----CceeecCCccccccccccccCccccccccCCccccc-CCCCcccCcccccc
Q 004169 215 YFAVCAICDDG-----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-DAVPNFLCQNCVYQ 275 (770)
Q Consensus 215 ~d~VC~IC~~g-----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev-~~~~~W~C~eC~~~ 275 (770)
.+.+|.+|..+ +.||+||+ |.+.||+.|+.+ .++..++ .+.+.|+|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~-C~~~yH~~Cl~P--------pl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQE-CHNLYHQDCHKP--------QVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSS-SCCEEETTTSSS--------CCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCC-CCCeEcCccCCC--------cccccccCCCCCCeeCccccch
Confidence 46899999987 67999995 999999998532 2332211 25789999999853
No 30
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.89 E-value=3.7e-06 Score=69.96 Aligned_cols=46 Identities=24% Similarity=0.607 Sum_probs=36.7
Q ss_pred cccccccCC--CCceeecCC-ccc-cccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 216 FAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 216 d~VC~IC~~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
..+| +|.+ .|+||.||+ .|+ ++||..| +|++.. +.+.|+|+.|..+
T Consensus 11 ~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~C----------vgl~~~---p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 11 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSC----------VSLTYK---PKGKWYCPKCRGD 60 (62)
T ss_dssp CEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSC---CSSCCCCHHHHTC
T ss_pred CcEE-ECCCCCCCCeeeeeCCCCCcccEeccc----------CCcCcC---CCCCEECcCcccC
Confidence 4678 9998 789999994 266 9999997 677754 3589999999753
No 31
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=8e-06 Score=70.69 Aligned_cols=48 Identities=17% Similarity=0.482 Sum_probs=36.0
Q ss_pred CcccccccC---CCCceeecCCccccccccccccCccccccccCCcccccCCCC-cccCccccc
Q 004169 215 YFAVCAICD---DGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (770)
Q Consensus 215 ~d~VC~IC~---~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~-~W~C~eC~~ 274 (770)
.+-+|.+|+ ++|+||.|| .|.++||+.|+.+ .++ .+ |.+ .|+|+.|..
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD-~C~~~yH~~Cl~P--------pl~--~~-P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCD-ECNVAYHIYCLNP--------PLD--KV-PEEEYWYCPSCKT 76 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECS-SSCCEEETTSSSS--------CCS--SC-CCSSCCCCTTTCC
T ss_pred CCCCCcCcCCcCCCCCEEEcC-CCCccccccccCC--------Ccc--CC-CCCCCcCCcCccC
Confidence 345899998 478899999 5999999998532 133 23 456 899999973
No 32
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.83 E-value=7.2e-06 Score=69.65 Aligned_cols=45 Identities=22% Similarity=0.614 Sum_probs=33.7
Q ss_pred cccccC---CCCceeecCCccccccccccccCccccccccCCcccccCCCC-cccCccccc
Q 004169 218 VCAICD---DGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (770)
Q Consensus 218 VC~IC~---~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~-~W~C~eC~~ 274 (770)
.|.+|+ ++|+||.||+ |.++||+.|+.+ .++. + |.+ .|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~-C~~~yH~~Cl~P--------pl~~--~-P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDE-CDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTT-TCCEEEGGGSSS--------CCSS--C-CSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCC-CCCceecccCCC--------CcCC--C-CCCCCcCCcCccC
Confidence 577888 4678999994 999999998432 1332 3 356 999999974
No 33
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.82 E-value=5.3e-06 Score=68.33 Aligned_cols=46 Identities=26% Similarity=0.621 Sum_probs=36.4
Q ss_pred CcccccccCC--CCceeecCC-ccc-cccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 215 YFAVCAICDD--GGDVTFCDG-RCL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 215 ~d~VC~IC~~--gGeLL~CdG-~C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
.+.+| +|.+ +|+||.||+ .|. .+||..| +|++..+ .+.|+|+.|..
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~C----------vgl~~~p---~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFAC----------VDLTTKP---KGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSCC---SSCCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEeccc----------CCcccCC---CCCEECcCccC
Confidence 34677 9998 789999994 288 5999997 7777543 57999999975
No 34
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.81 E-value=5.5e-06 Score=68.33 Aligned_cols=46 Identities=26% Similarity=0.635 Sum_probs=36.2
Q ss_pred CcccccccCC--CCceeecCCc-cc-cccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 215 YFAVCAICDD--GGDVTFCDGR-CL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 215 ~d~VC~IC~~--gGeLL~CdG~-C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
...+| +|.+ .|++|.||+. |. ++||..| +|++.. +.+.|+|+.|..
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~C----------vgl~~~---p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFAC----------VGLTTK---PRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGG----------GTCSSC---CSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhc----------CCCCcC---CCCCEECcCccC
Confidence 35678 8987 6889999952 77 7999997 677654 358999999974
No 35
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.73 E-value=1.5e-05 Score=65.84 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=39.7
Q ss_pred CCcccccccCCC----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
..+.+|.+|..+ +.+|.|| .|.++||..| +|++..+.+....|+|+.|..+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCD-LCEMWFHGKC----------VKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECS-SSCCEEETTT----------TTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEcc-CCCCCCCccc----------cCcChhHhcCCCcEECCCCcCc
Confidence 346789999864 5699999 6999999997 6777655433578999999853
No 36
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.62 E-value=4e-05 Score=68.90 Aligned_cols=43 Identities=28% Similarity=0.737 Sum_probs=33.2
Q ss_pred cccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccc
Q 004169 218 VCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (770)
Q Consensus 218 VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~ 273 (770)
+|..++++|.||+|+ .|.++||..| +|++..++ .+.|+|+.|.
T Consensus 32 iC~~~~~~~~mi~Cd-~C~~w~H~~C----------~~~~~~~~--p~~w~C~~C~ 74 (98)
T 2lv9_A 32 ICGFTHDDGYMICCD-KCSVWQHIDC----------MGIDRQHI--PDTYLCERCQ 74 (98)
T ss_dssp TTSCCSCSSCEEEBT-TTCBEEETTT----------TTCCTTSC--CSSBCCTTTS
T ss_pred ECCCccCCCcEEEcC-CCCCcCcCcC----------CCCCccCC--CCCEECCCCc
Confidence 466666778999999 4999999997 55654443 2579999997
No 37
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.59 E-value=2.7e-05 Score=69.41 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=35.8
Q ss_pred CcccccccCC--CCceeecCCc-cc-cccccccccCccccccccCCcccccCCCCcccCcc-ccc
Q 004169 215 YFAVCAICDD--GGDVTFCDGR-CL-RSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQN-CVY 274 (770)
Q Consensus 215 ~d~VC~IC~~--gGeLL~CdG~-C~-RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~e-C~~ 274 (770)
...+| +|.+ .|+||.||+. |+ .+||..| +||+..+ .+.|+|+. |..
T Consensus 25 ~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~C----------Vgl~~~p---~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYGPMVACDNPACPFEWFHYGC----------VGLKQAP---KGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSSSEECCCSSSCSCSCEETTT----------SSCSSCT---TSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCCCEEEecCCCCccccCcCcc----------CCCCcCC---CCCccCChhhcc
Confidence 35778 8986 5789999962 55 8999997 7887543 57999999 863
No 38
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.51 E-value=3.9e-05 Score=78.63 Aligned_cols=47 Identities=19% Similarity=0.559 Sum_probs=33.3
Q ss_pred cccccccCC---CCceeecCCccccccccccccCccccccccCCcccccCCCC-cccCccccc
Q 004169 216 FAVCAICDD---GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVP-NFLCQNCVY 274 (770)
Q Consensus 216 d~VC~IC~~---gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~-~W~C~eC~~ 274 (770)
+..|.+|+. +|.||+||| |.++||+.|+.+ .++. + |.+ .|+|+.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~-C~~~yH~~CL~P--------PL~~--v-P~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDE-CDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSS-SCCEECSCC--C--------CCCS--C-CSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCC-CCcceeCccCCC--------Cccc--C-CCCCCCCCcCCcC
Confidence 458999986 678999995 999999998532 2332 3 456 999999974
No 39
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.50 E-value=1.3e-05 Score=73.12 Aligned_cols=50 Identities=24% Similarity=0.621 Sum_probs=39.5
Q ss_pred cccccccCCC----CceeecCCccccccccccccCccccccccCCccccc-----CCCCcccCcccccc
Q 004169 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-----DAVPNFLCQNCVYQ 275 (770)
Q Consensus 216 d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev-----~~~~~W~C~eC~~~ 275 (770)
...|.+|..+ |+++.|++.|.+|||..| +|++..+. ++...|+|+.|...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C----------Vglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHREC----------TGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGG----------TTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCccccccccc----------CCcCHHHHHhhccCCCCCEECccccCc
Confidence 4689999876 679999867999999997 67876432 24589999999864
No 40
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.46 E-value=7.1e-05 Score=63.54 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.3
Q ss_pred CceecCCcccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 336 ~~F~CPlH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
..|.|+.-.|.+|++.++ .+.|+.|+.|+.+||..||.+++.
T Consensus 12 ~~w~C~~C~C~~C~~~~~----~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (70)
T 3asl_A 12 VNRLCRVCACHLCGGRQD----PDKQLMCDECDMAFHIYCLDPPLS 53 (70)
T ss_dssp TTSCCTTTSBTTTCCCSC----GGGEEECTTTCCEEEGGGSSSCCS
T ss_pred CCeECCCCCCcCCCCcCC----CCCEEEcCCCCCceecccCCCCcC
Confidence 569999889999998764 348999999999999999998764
No 41
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.44 E-value=8.2e-05 Score=64.37 Aligned_cols=42 Identities=26% Similarity=0.585 Sum_probs=35.4
Q ss_pred CceecCCcccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 336 ~~F~CPlH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
..|.|+.-.|.+|+..++ ...|+.|+.|+.+||..||.+++.
T Consensus 20 ~~w~C~~c~C~vC~~~~~----~~~ll~CD~C~~~yH~~Cl~Ppl~ 61 (77)
T 2e6s_A 20 PEKKCHSCSCRVCGGKHE----PNMQLLCDECNVAYHIYCLNPPLD 61 (77)
T ss_dssp SSSCCSSSSCSSSCCCCC----STTEEECSSSCCEEETTSSSSCCS
T ss_pred CCeECCCCCCcCcCCcCC----CCCEEEcCCCCccccccccCCCcc
Confidence 458888889999998654 348999999999999999998764
No 42
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.43 E-value=1.9e-05 Score=76.74 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=38.5
Q ss_pred CCcccccccCCC----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 214 NYFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
....+| +|+.+ |.+|+|| .|.+|||..| +|++..+.+..+.|+|+.|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd-~C~~WfH~~C----------v~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCD-RCQNWYHGRC----------VGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECC-CCCchhChhh----------cCCchhhccCccCeecCCCcch
Confidence 446789 99875 4599999 5999999997 5776554444689999999854
No 43
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.42 E-value=1e-05 Score=67.97 Aligned_cols=51 Identities=25% Similarity=0.641 Sum_probs=37.6
Q ss_pred CCCcccccccCCCC----ceeecCCccccccccccccCccccccccCCccccc-----CCCCcccCcccc
Q 004169 213 ENYFAVCAICDDGG----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQI-----DAVPNFLCQNCV 273 (770)
Q Consensus 213 d~~d~VC~IC~~gG----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev-----~~~~~W~C~eC~ 273 (770)
+.....|.+|..+. .+|.|||.|.++||..| +|++..+. .+...|+|+.|.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C----------vglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRIC----------TGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH----------HTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhc----------cCCCHHHHHHhhccCCCcEECcCcc
Confidence 34467899999862 49999977999999997 67876532 245699999986
No 44
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.37 E-value=8.4e-05 Score=64.40 Aligned_cols=45 Identities=20% Similarity=0.603 Sum_probs=32.2
Q ss_pred cccccCCC---CceeecCCccccccccccccCccccccccCCcccccCCCCc-ccCccccc
Q 004169 218 VCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPN-FLCQNCVY 274 (770)
Q Consensus 218 VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~-W~C~eC~~ 274 (770)
.|.+|+.+ +.||+|| .|.++||+.|+.+ .++. + |.+. |+|+.|.+
T Consensus 28 ~C~vC~~~~d~~~ll~CD-~C~~~yH~~Cl~P--------pL~~--~-P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDP--------PLSS--V-PSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECT-TTCCEEETTTSSS--------CCSS--C-CSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeC-CCCCccCcccCCC--------cccC--C-CCCCceECcCccc
Confidence 57777765 5699999 5999999998532 1332 2 3556 99999974
No 45
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=63.40 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=36.8
Q ss_pred CceecCCcccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 336 ~~F~CPlH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
..|.|+.-.|.+|+..++. .+|+.|+.|+++||..||.+++.
T Consensus 20 ~~W~C~~C~C~vC~~~~d~----~~ll~CD~C~~~yH~~Cl~PpL~ 61 (77)
T 3shb_A 20 VNRLCRVCACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLS 61 (77)
T ss_dssp TTSCCTTTSBTTTCCCSCG----GGEEECTTTCCEEETTTSSSCCS
T ss_pred CCCCCCCCcCCccCCCCCC----cceeEeCCCCCccCcccCCCccc
Confidence 5699999999999997753 48999999999999999988764
No 46
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.19 E-value=7.8e-05 Score=63.68 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=37.0
Q ss_pred CCcccccccCCC---CceeecCCccccccccccccCccccccccCCcccccC----CCCcccCcccccc
Q 004169 214 NYFAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID----AVPNFLCQNCVYQ 275 (770)
Q Consensus 214 ~~d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~----~~~~W~C~eC~~~ 275 (770)
.+..+| +|+.+ +.+|.|+ .|..+||..| +|++..+.. ....|+|+.|...
T Consensus 14 ~~~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~C----------vgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 14 PNALYC-ICRQPHNNRFMICCD-RCEEWFHGDC----------VGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TTCCCS-TTCCCCCSSCEEECS-SSCCEEEHHH----------HSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCEE-ECCCccCCCCEEEeC-CCCCcEeCeE----------EccchhhhhhccCCCCeEECcCCcCc
Confidence 335778 89875 5699999 5999999997 677654321 2468999999853
No 47
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.14 E-value=0.00019 Score=61.85 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=37.2
Q ss_pred cccccccCCC----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 216 d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
..+| +|..+ +.+|.|| .|..+||..| +|++..+......|+|+.|...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG-LCQDWFHGSC----------VGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT-TTCCEEEHHH----------HTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcC-CCCCcEEeee----------cCcccccccCCCeEECCCcccc
Confidence 4567 88764 5699999 5999999997 6777665444579999999854
No 48
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.14 E-value=0.00012 Score=58.55 Aligned_cols=44 Identities=27% Similarity=0.638 Sum_probs=33.2
Q ss_pred ccccCCC----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccc
Q 004169 219 CAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (770)
Q Consensus 219 C~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~ 273 (770)
|.+|..+ +.+|.|||.|..+||..| +|++..+.. ...|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~C----------vgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVC----------VGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTT----------TTCCHHHHH-HSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccc----------cCCCccccC-CCCEECCCCC
Confidence 6677654 349999977999999997 788765432 3789999984
No 49
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.10 E-value=0.00012 Score=57.82 Aligned_cols=34 Identities=32% Similarity=0.787 Sum_probs=28.6
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.|.+|+..++. ..|+.|+.|+.+||..|+.+++.
T Consensus 2 ~C~vC~~~~~~----~~ll~Cd~C~~~~H~~Cl~p~l~ 35 (51)
T 1f62_A 2 RCKVCRKKGED----DKLILCDECNKAFHLFCLRPALY 35 (51)
T ss_dssp CCTTTCCSSCC----SCCEECTTTCCEECHHHHCTTCC
T ss_pred CCCCCCCCCCC----CCEEECCCCChhhCcccCCCCcC
Confidence 58899987643 37999999999999999987764
No 50
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.05 E-value=0.0003 Score=62.55 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=35.7
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCccc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i~ 413 (770)
+|.+|+.++ .|+.|+.||++||..|+.+++...+ ..-|+|+.+...
T Consensus 27 ~C~vC~~~g-------~LL~CD~C~~~fH~~Cl~PpL~~~P-----------------~g~W~C~~C~~~ 72 (88)
T 1fp0_A 27 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQDVP-----------------GEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSCSSS-------CCEECTTSSCEECTTSSSTTCCCCC-----------------SSSCCCCSCCCC
T ss_pred cCcCcCCCC-------CEEECCCCCCceecccCCCCCCCCc-----------------CCCcCCccccCC
Confidence 689999865 5999999999999999988764322 224788888754
No 51
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.02 E-value=0.0003 Score=59.56 Aligned_cols=48 Identities=29% Similarity=0.632 Sum_probs=35.9
Q ss_pred CCcccccccCCC---C-ceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 214 NYFAVCAICDDG---G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 214 ~~d~VC~IC~~g---G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
....+| +|+.+ | .+|.|| .|..+||..| +|++..+. ....|+|+.|..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd-~C~~W~H~~C----------vg~~~~~~-~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACD-GCGVWHHTRC----------IGINNADA-LPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECS-SSCEEEETTT----------TTCCTTSC-CCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECC-CCCCccCCee----------eccCcccc-CCCcEECCCccC
Confidence 445778 69864 4 499999 5999999997 67764332 247899999975
No 52
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.00 E-value=0.00037 Score=58.84 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=35.5
Q ss_pred CcccccccCCC---CceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 215 YFAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 215 ~d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
...+| +|+.+ +.+|.||+ |..+||..| +|++..++ .+.|+|+.|..
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~-C~~WfH~~C----------vgi~~~~~--~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNE-CHTWIHLSC----------AKIRKSNV--PEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTT-TCCEEETTT----------TTCCTTSC--CSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCC-CCccccccc----------cCcCcccC--CCcEECCCCCC
Confidence 34668 89864 35999995 999999997 67776543 47899999974
No 53
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.92 E-value=0.00047 Score=59.35 Aligned_cols=50 Identities=18% Similarity=0.470 Sum_probs=37.6
Q ss_pred CcccccccCCC---CceeecCC-ccccccccccccCccccccccCCccccc----CCCCcccCcccccc
Q 004169 215 YFAVCAICDDG---GDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQI----DAVPNFLCQNCVYQ 275 (770)
Q Consensus 215 ~d~VC~IC~~g---GeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlt~~ev----~~~~~W~C~eC~~~ 275 (770)
...+| +|+.. |.+|.||+ .|..|||..| +|++..+. .....|+|+.|...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~C----------Vgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGC----------VILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHH----------HSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEE----------EccccccccccccCCCCEECCCCCcc
Confidence 45678 79865 78999995 5999999997 67765542 12478999999753
No 54
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.87 E-value=0.00035 Score=59.39 Aligned_cols=46 Identities=30% Similarity=0.754 Sum_probs=34.8
Q ss_pred cccccccCC--CCceeecCCc-c-ccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 216 FAVCAICDD--GGDVTFCDGR-C-LRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 216 d~VC~IC~~--gGeLL~CdG~-C-~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
..+| +|.. .|.+|.||+. | ..+||..| +|++.. +.+.|+|+.|...
T Consensus 6 ~~yC-~C~~~~~g~MI~CD~cdC~~~WfH~~C----------vgl~~~---p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYC-ICNQVSYGEMVGCDNQDCPIEWFHYGC----------VGLTEA---PKGKWYCPQCTAA 55 (70)
T ss_dssp CCCS-TTSCCCCSSEECCSCTTCSCCCEEHHH----------HTCSSC---CSSCCCCHHHHHH
T ss_pred CeEE-EcCCCCCCCEeEeCCCCCCccCCcccc----------cccCcC---CCCCEECCCCCcc
Confidence 4567 4875 4789999963 5 38999997 677754 3689999999854
No 55
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.87 E-value=0.00042 Score=71.08 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=33.3
Q ss_pred CceecCCcccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 336 ESFTCPVHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 336 ~~F~CPlH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
..|.|+.-.|.+|+...+. ..|+.|+.|+.+||..||.+++.
T Consensus 168 ~~w~C~~c~C~vC~~~~~~----~~lL~CD~C~~~yH~~CL~PPL~ 209 (226)
T 3ask_A 168 VNRLCRVCACHLCGGRQDP----DKQLMCDECDMAFHIYCLDPPLS 209 (226)
T ss_dssp TTSCCTTTSCSSSCCCCC------CCEECSSSCCEECSCC--CCCC
T ss_pred cCEecCCCCCcCCCCCCCC----CCeEEcCCCCcceeCccCCCCcc
Confidence 4588999999999987643 47999999999999999988764
No 56
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.76 E-value=0.00033 Score=57.32 Aligned_cols=31 Identities=39% Similarity=0.943 Sum_probs=26.8
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.|.+|+..+ .|+.|+.|+.+||..|+.+++.
T Consensus 7 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~ 37 (60)
T 2puy_A 7 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK 37 (60)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECGGGSSSCCS
T ss_pred CCcCCCCCC-------cEEEcCCCCcCEECCcCCCCcC
Confidence 688898754 6999999999999999998764
No 57
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.75 E-value=0.00059 Score=57.28 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=34.7
Q ss_pred ccccccCC---CCceeecCC-ccccccccccccCccccccccCCcccccC---CCCcccCccccc
Q 004169 217 AVCAICDD---GGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQAQID---AVPNFLCQNCVY 274 (770)
Q Consensus 217 ~VC~IC~~---gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~---~~~~W~C~eC~~ 274 (770)
..| +|+. .|.+|.||+ .|..|||..| +|++..+.. ....|+|+.|+.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~C----------vgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNC----------VLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTT----------SCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhh----------CCCCcccccccCCCCcEECcCccC
Confidence 446 7854 478999996 7999999997 677654322 125799999974
No 58
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.75 E-value=0.00035 Score=62.18 Aligned_cols=50 Identities=26% Similarity=0.554 Sum_probs=38.1
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCcccc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIIS 414 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i~~ 414 (770)
.|.+|+..++. ..|+.|+.|+.+||..||.+++... + ..-|+|+.|....
T Consensus 18 ~C~vC~~~~~~----~~ll~CD~C~~~~H~~Cl~Ppl~~~---------------P--~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 18 ICQVCSRGDED----DKLLFCDGCDDNYHIFCLLPPLPEI---------------P--RGIWRCPKCILAE 67 (92)
T ss_dssp CCSSSCCSGGG----GGCEECTTTCCEECSSSSSSCCSSC---------------C--SSCCCCHHHHHHH
T ss_pred CCccCCCcCCC----CCEEEcCCCCchhccccCCCCcccC---------------C--CCCcCCccCcCcc
Confidence 69999997753 4799999999999999998876422 1 2247888887543
No 59
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.75 E-value=0.00037 Score=58.63 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=35.2
Q ss_pred CcccccCcCCccCccCccceeeccccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCcc
Q 004169 342 VHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKI 412 (770)
Q Consensus 342 lH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i 412 (770)
.-.|.+|+.++ .|+.|+.|+++||..||.+++.... ..-|+|+.+..
T Consensus 12 ~~~C~vC~~~~-------~ll~Cd~C~~~~H~~Cl~P~l~~~P-----------------~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDGT-------DVLRCTHCAAAFHWRCHFPAGTSRP-----------------GTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCCT-------TCEECSSSCCEECHHHHCTTTCCCC-----------------SSSCCCTTTTT
T ss_pred CCCcCCCCCCC-------eEEECCCCCCceecccCCCccCcCC-----------------CCCEECccccC
Confidence 34689998643 5999999999999999988764321 23488988864
No 60
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.74 E-value=0.00071 Score=55.75 Aligned_cols=31 Identities=35% Similarity=0.921 Sum_probs=26.4
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
+|.+|+..+ .|+.|+.|+.+||..|+.+++.
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~fH~~Cl~ppl~ 41 (61)
T 1mm2_A 11 FCRVCKDGG-------ELLCCDTCPSSYHIHCLNPPLP 41 (61)
T ss_dssp SCTTTCCCS-------SCBCCSSSCCCBCSSSSSSCCS
T ss_pred cCCCCCCCC-------CEEEcCCCCHHHcccccCCCcC
Confidence 688888643 6999999999999999988664
No 61
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.70 E-value=0.00049 Score=57.44 Aligned_cols=31 Identities=35% Similarity=0.989 Sum_probs=26.8
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.|.+|+.++ .|+.|+.|+.+||..|+.+++.
T Consensus 10 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~ppl~ 40 (66)
T 1xwh_A 10 ECAVCRDGG-------ELICCDGCPRAFHLACLSPPLR 40 (66)
T ss_dssp SBSSSSCCS-------SCEECSSCCCEECTTTSSSCCS
T ss_pred CCccCCCCC-------CEEEcCCCChhhcccccCCCcC
Confidence 688998754 5999999999999999998764
No 62
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.52 E-value=0.00091 Score=58.95 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=40.9
Q ss_pred ccCCCcccccccC--CCCceeecCCccccccccccccCcccccc---ccCCcccccCCCCcccCccccc
Q 004169 211 KDENYFAVCAICD--DGGDVTFCDGRCLRSFHATITAGKNALCQ---SLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 211 ~dd~~d~VC~IC~--~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~---sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
+...+|+.|.||. ..++|+.|. .|.|.||..|+....- +. .+..+.. ......|.|++|.+
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCR-vC~RvfH~~CL~r~gy-~~~~~a~e~~l~-A~T~~GWSC~~Cen 75 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCR-VCTRVFHDGCLRRMGY-IQGDSAAEVTEM-AHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCS-SSSSCCCHHHHHHHTS-CCCCCCCSCSCC-CSSSSSCCCTTTCC
T ss_pred cCCCCCcccCccccccccceeccc-cccccccHhhcccccc-cccHHHHHHHHc-cCCCCCccccccch
Confidence 3456789999999 567899999 7999999999864211 10 0111110 11356899999974
No 63
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.49 E-value=0.001 Score=65.40 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=34.8
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKI 412 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i 412 (770)
+|.+|+.++ .|+.|+.||.+||..|+.+++... + ..-|+|+.+..
T Consensus 6 ~C~~C~~~g-------~ll~Cd~C~~~~H~~C~~p~l~~~---------------p--~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQNGG-------ELLCCEKCPKVFHLSCHVPTLTNF---------------P--SGEWICTFCRD 50 (184)
T ss_dssp SCTTTCCCS-------SCEECSSSSCEECTTTSSSCCSSC---------------C--SSCCCCTTTSC
T ss_pred ccccCCCCC-------eeeecCCCCcccCccccCCCCCCC---------------C--CCCEECccccC
Confidence 689998765 499999999999999998876422 1 23488888875
No 64
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.48 E-value=0.00061 Score=56.16 Aligned_cols=31 Identities=42% Similarity=1.047 Sum_probs=26.6
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
+|.+|+..+ .|+.|+.|+.+||..|+.+++.
T Consensus 13 ~C~vC~~~g-------~ll~CD~C~~~fH~~Cl~p~l~ 43 (61)
T 2l5u_A 13 YCEVCQQGG-------EIILCDTCPRAYHMVCLDPDME 43 (61)
T ss_dssp SCTTTSCCS-------SEEECSSSSCEEEHHHHCTTCC
T ss_pred CCccCCCCC-------cEEECCCCChhhhhhccCCCCC
Confidence 688898753 6999999999999999988653
No 65
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=96.43 E-value=0.00071 Score=57.78 Aligned_cols=48 Identities=23% Similarity=0.512 Sum_probs=35.4
Q ss_pred cccccccCCC----CceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 216 FAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 216 d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
+.+--+|+.+ +.+|.|| .|..+||..| +|++..+.+..+.|+|+.|..
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd-~C~~WfH~~C----------vg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECD-ACKDWFHGSC----------VGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp CCEETTTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCTTTGGGBSSCCCHHHHH
T ss_pred CeeEEECCCcCCCCCCEEEcC-CCCCCEeccc----------ccccccccCCCCEEECCCCcc
Confidence 3443478753 4699999 5999999997 677765543347899999974
No 66
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.40 E-value=0.0019 Score=52.13 Aligned_cols=31 Identities=39% Similarity=0.943 Sum_probs=26.8
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
.|.+|+..+ .|+.|+.|+.+||..|+.+++.
T Consensus 11 ~C~vC~~~g-------~ll~Cd~C~~~~H~~Cl~ppl~ 41 (56)
T 2yql_A 11 FCSVCRKSG-------QLLMCDTCSRVYHLDCLDPPLK 41 (56)
T ss_dssp SCSSSCCSS-------CCEECSSSSCEECSSSSSSCCC
T ss_pred CCccCCCCC-------eEEEcCCCCcceECccCCCCcC
Confidence 688898753 6999999999999999998765
No 67
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=96.39 E-value=0.0012 Score=66.17 Aligned_cols=47 Identities=30% Similarity=0.572 Sum_probs=35.9
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCccc
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKII 413 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i~ 413 (770)
-+|.+|+.++ .|+.|+.||.+||..|+.+++... + ..-|+|+.+...
T Consensus 8 ~~C~~C~~~g-------~ll~Cd~C~~~~H~~Cl~p~l~~~---------------p--~~~W~C~~C~~~ 54 (207)
T 3u5n_A 8 DWCAVCQNGG-------DLLCCEKCPKVFHLTCHVPTLLSF---------------P--SGDWICTFCRDI 54 (207)
T ss_dssp SSBTTTCCCE-------EEEECSSSSCEECTTTSSSCCSSC---------------C--SSCCCCTTTSCS
T ss_pred CCCCCCCCCC-------ceEEcCCCCCccCCccCCCCCCCC---------------C--CCCEEeCceeCc
Confidence 3689998765 499999999999999998876422 1 234889988753
No 68
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.26 E-value=0.0023 Score=56.41 Aligned_cols=37 Identities=32% Similarity=0.723 Sum_probs=29.8
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
-+|.+|+..... ...+|+.|+.|+.+||..|+.+.+.
T Consensus 17 ~~C~vC~~~~~~--~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 17 LACVVCRQMTVA--SGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp CSCSSSCCCCCC--TTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CcCCCCCCCCCC--CCCceEECCCCCCeEcCccCCCccc
Confidence 379999987532 2348999999999999999988764
No 69
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.20 E-value=0.0033 Score=51.97 Aligned_cols=37 Identities=27% Similarity=0.714 Sum_probs=29.8
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
..|.+|+..... .+..|+.|+.|+.+||..|+.+++.
T Consensus 7 ~~C~vC~~~~~~--~~~~ll~Cd~C~~~~H~~C~~p~l~ 43 (66)
T 2yt5_A 7 GVCTICQEEYSE--APNEMVICDKCGQGYHQLCHTPHID 43 (66)
T ss_dssp CCBSSSCCCCCB--TTBCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCCCCCCCCCC--CCCCEEECCCCChHHHhhhCCCccc
Confidence 579999986432 2458999999999999999988653
No 70
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=96.19 E-value=0.0018 Score=64.40 Aligned_cols=31 Identities=29% Similarity=0.790 Sum_probs=27.0
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCcc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEIT 381 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~~ 381 (770)
+|.+|+.++ .++.|+.||.+||..|+.+++.
T Consensus 4 ~C~~C~~~g-------~ll~Cd~C~~~~H~~Cl~p~l~ 34 (189)
T 2ro1_A 4 ICRVCQKPG-------DLVMCNQCEFCFHLDCHLPALQ 34 (189)
T ss_dssp CBTTTCCCS-------SCCCCTTTCCBCCSTTSTTCCS
T ss_pred cCccCCCCC-------ceeECCCCCchhccccCCCCcc
Confidence 689999765 4899999999999999988764
No 71
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.15 E-value=0.0024 Score=50.89 Aligned_cols=40 Identities=23% Similarity=0.577 Sum_probs=31.6
Q ss_pred ccCC---CCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccc
Q 004169 221 ICDD---GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCV 273 (770)
Q Consensus 221 IC~~---gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~ 273 (770)
+|+. ++.+|.|++ |..+||..| +|++..++ .+.|+|+.|.
T Consensus 8 ~C~~~~~~~~MI~Cd~-C~~W~H~~C----------vgi~~~~~--~~~~~C~~C~ 50 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNE-CHTWIHLSC----------AKIRKSNV--PEVFVCQKCR 50 (52)
T ss_dssp TTCCBCTTCCEEECTT-TCCEEETTT----------TTCCGGGC--CSSCCCHHHH
T ss_pred EeCCcCCCCCEEEcCC-CCccccccc----------cCCCcccC--CCcEECcCCC
Confidence 5654 457999994 999999997 67776543 4799999986
No 72
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=95.48 E-value=0.0078 Score=57.76 Aligned_cols=62 Identities=21% Similarity=0.572 Sum_probs=41.4
Q ss_pred CcccCccccc-------------cCcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHH
Q 004169 265 PNFLCQNCVY-------------QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRER 331 (770)
Q Consensus 265 ~~W~C~eC~~-------------~qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~kr 331 (770)
..|+|..|.. .+..|.+|+. +++++-| ..|.+.||..|+.+.+.+. .+..-
T Consensus 39 ~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~--------GG~LlcC--D~Cpr~Fh~~Cl~p~l~~~------~l~~i 102 (142)
T 2lbm_A 39 QVLICKNCFKYYMSDDISRDSDGMDEQCRWCAE--------GGNLICC--DFCHNAFCKKCILRNLGRK------ELSTI 102 (142)
T ss_dssp TEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCC--------CSSEEEC--SSSCCEEEHHHHHHHTCHH------HHHHH
T ss_pred cccccHHHHHHHhcCCceecCCCCCCeecccCC--------CCcEEeC--CCCCCeeeHhhcCCCCChh------hhhhc
Confidence 4566777763 2467999985 4589999 6999999999998766431 22211
Q ss_pred HhcCCceecCC
Q 004169 332 IAAGESFTCPV 342 (770)
Q Consensus 332 V~~g~~F~CPl 342 (770)
+.....|.||.
T Consensus 103 ~~p~~~W~C~~ 113 (142)
T 2lbm_A 103 MDENNQWYCYI 113 (142)
T ss_dssp HTSTTCCCCTT
T ss_pred ccCCCCCEeec
Confidence 13346787753
No 73
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.41 E-value=0.0029 Score=71.39 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=36.7
Q ss_pred cccccccCC----CCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 216 FAVCAICDD----GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 216 d~VC~IC~~----gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
..+| +|+. +|.+|.|| .|..+||..| +|++..+.+..+.|+|+.|...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd-~C~~WfH~~C----------vgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECD-ICKDWFHGSC----------VGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBT-TTCCEEEHHH----------HTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEcc-CCCCceeeee----------cCcCcccccCCCEEECCCCcCC
Confidence 3556 8875 46699999 5999999997 6777665433478999999853
No 74
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.20 E-value=0.0042 Score=60.61 Aligned_cols=57 Identities=25% Similarity=0.506 Sum_probs=41.2
Q ss_pred ccCCCcccccccCCCCceeecCC-ccccccccccccCccccccccCCcc-cccCCCCcccCcccc
Q 004169 211 KDENYFAVCAICDDGGDVTFCDG-RCLRSFHATITAGKNALCQSLGYTQ-AQIDAVPNFLCQNCV 273 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGeLL~CdG-~C~RsFH~~Cl~g~~s~C~sLGlt~-~ev~~~~~W~C~eC~ 273 (770)
++|..+.+|.+|.+||+|++|+. .|.|+|-..|+.- .+|... .++.....|.|--|.
T Consensus 74 DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~------nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDL------LVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHH------HTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHH------hcCHhHHHHHhccCCCEEEecC
Confidence 45778899999999999999984 7999999999752 133322 223346789655444
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=95.14 E-value=0.006 Score=51.68 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.6
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCCc
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 380 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~ 380 (770)
+|.+|+...+ ...|+.|+.|+.+||..|+....
T Consensus 20 ~C~~C~~~~~----~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 20 ICPGCNKPDD----GSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp CBTTTTBCCS----SCCEEECSSSSSEEEHHHHTCSS
T ss_pred CCCCCCCCCC----CCCEEEcCCCCcccccccCCCCc
Confidence 5778988754 23799999999999999986644
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.03 E-value=0.0053 Score=61.06 Aligned_cols=48 Identities=21% Similarity=0.579 Sum_probs=34.1
Q ss_pred ccccccCCC---C----ceeecCCccccccccccccCccccccccCCcccccC------CCCcccCcccccc
Q 004169 217 AVCAICDDG---G----DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID------AVPNFLCQNCVYQ 275 (770)
Q Consensus 217 ~VC~IC~~g---G----eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~------~~~~W~C~eC~~~ 275 (770)
.+|.+|+.+ + .+|.|| .|.++||..| .|++.+..+ ....|+|+.|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd-~C~~W~H~~C----------vgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG-KCDRWVHSKC----------ENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT-TTCCEEEGGG----------SSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECC-CCCcccchhc----------cccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 568888753 3 399999 5999999997 567653211 1137999999853
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=94.86 E-value=0.0088 Score=50.92 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=27.7
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
.|.+|+.++.. .+..|+.|+.|+.+||..|+.+.
T Consensus 18 ~C~vC~~~~s~--~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 18 VCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp SCSSSCCCCCC--SSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCC--CCCCEEECCCCCCccccccCCCC
Confidence 68999987521 24589999999999999999765
No 78
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.72 E-value=0.018 Score=51.60 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=22.9
Q ss_pred cCcCCccCccCccceeeccccccccccccCCCCc
Q 004169 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 380 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~ 380 (770)
+|+...+ ++.|+.|..|+.+||..|+.+..
T Consensus 32 iC~~~~~----~~~mi~Cd~C~~w~H~~C~~~~~ 61 (98)
T 2lv9_A 32 ICGFTHD----DGYMICCDKCSVWQHIDCMGIDR 61 (98)
T ss_dssp TTSCCSC----SSCEEEBTTTCBEEETTTTTCCT
T ss_pred ECCCccC----CCcEEEcCCCCCcCcCcCCCCCc
Confidence 4665543 23799999999999999996643
No 79
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.41 E-value=0.011 Score=52.28 Aligned_cols=36 Identities=22% Similarity=0.560 Sum_probs=28.7
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCCCc
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 380 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~ 380 (770)
-.|.+|+.++.. .+..|+.|+.|+.+||..|+.+..
T Consensus 26 ~~C~vC~~~~s~--~~~~ll~CD~C~~~fH~~Cl~p~~ 61 (88)
T 2l43_A 26 AVCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPY 61 (88)
T ss_dssp CCCSSCCSSSSC--SEEEEEECSSSCCCCCHHHHTCSS
T ss_pred CcCCcCCCCCCC--CCCCEEECCCCCchhhcccCCCCc
Confidence 479999987521 234899999999999999997753
No 80
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=93.49 E-value=0.025 Score=64.19 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=31.2
Q ss_pred ceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc
Q 004169 227 DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY 274 (770)
Q Consensus 227 eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~ 274 (770)
.+|.|| .|..+||..| +|++..+.+..+.|+|+.|..
T Consensus 57 ~mI~CD-~C~~WfH~~C----------Vgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 57 QWIGCD-SCQTWYHFLC----------SGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp SEEECT-TTCCEEEGGG----------TTCCGGGTTTEEECCCTTTHH
T ss_pred CEEECC-CCCcCCCCcC----------CCCChhHhcCCCeEECcCCcC
Confidence 499999 5999999997 788876655568999999985
No 81
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.29 E-value=0.012 Score=55.66 Aligned_cols=31 Identities=26% Similarity=0.750 Sum_probs=26.9
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCCCc
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTEI 380 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~~ 380 (770)
-+|..|..++ +|+.|+.||++||..|+.+.+
T Consensus 58 ~~C~vC~dGG-------~LlcCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 58 EQCRWCAEGG-------NLICCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp SSCTTTCCCS-------EEEECSSSSCEEEHHHHHHHT
T ss_pred CcCeecCCCC-------eeEecCCCchhhhHHHhCCCc
Confidence 3799999876 599999999999999997754
No 82
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=93.13 E-value=0.014 Score=65.24 Aligned_cols=47 Identities=23% Similarity=0.513 Sum_probs=36.0
Q ss_pred cccccCC----CCceeecCCccccccccccccCccccccccCCcccccCCCCcccCcccccc
Q 004169 218 VCAICDD----GGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 218 VC~IC~~----gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~ 275 (770)
+.-+|+. +|.+|.|| .|..+||..| +|++..+.+..+.|+|+.|...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD-~C~~WfH~~C----------Vgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECD-MCQDWFHGSC----------VGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECT-TTCCEEEHHH----------HTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcC-CCCccccccc----------CCcCcccccCCCEEECCCCccc
Confidence 3447765 46799999 6999999997 6887765434578999999853
No 83
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=92.89 E-value=0.023 Score=62.37 Aligned_cols=57 Identities=25% Similarity=0.662 Sum_probs=40.5
Q ss_pred ccCCCcccccccCCCCceeecC-CccccccccccccCccccccccCCccc-ccCCCCcccCcccc
Q 004169 211 KDENYFAVCAICDDGGDVTFCD-GRCLRSFHATITAGKNALCQSLGYTQA-QIDAVPNFLCQNCV 273 (770)
Q Consensus 211 ~dd~~d~VC~IC~~gGeLL~Cd-G~C~RsFH~~Cl~g~~s~C~sLGlt~~-ev~~~~~W~C~eC~ 273 (770)
++|..+.+|.+|.+||+|++|+ ..|.|+|-..|+.- .+|.... .+.....|.|--|.
T Consensus 88 D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~------n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 88 DDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDS------LVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp CSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHH------HTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHH------hcChhHHHHhhccCCceEEEcC
Confidence 3577889999999999999998 45999999998742 1332221 12345788666555
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.40 E-value=0.068 Score=43.79 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=25.7
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
+|.+|++..+. ...|++|+.|..+||..|+...
T Consensus 8 ~C~~C~~~~~~---~~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 8 QCGACGESYAA---DEFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp CCSSSCCCCCS---SSCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCccCC---CCCEEEccCCCCCCCccccCcC
Confidence 45688886542 3479999999999999998553
No 85
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.20 E-value=0.057 Score=49.04 Aligned_cols=87 Identities=18% Similarity=0.255 Sum_probs=44.4
Q ss_pred ccccccCCCCceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccccCcccccccccCCCCCCCCCce
Q 004169 217 AVCAICDDGGDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQEHQCFACGMLGSSDKSSSQEV 296 (770)
Q Consensus 217 ~VC~IC~~gGeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~qhqCfvCgklGssd~ss~~eV 296 (770)
.+|..|.... |+ .|...+|..|+.|..-.|..-- ...-....-..|..|.. -..|..|..... ....+
T Consensus 8 ~~C~~C~~~~----C~-~C~~c~~~~~~~~~~~~~~~c~--~~~~~~~~~~~~~~c~~-c~~c~~c~~~~~----~~~~m 75 (117)
T 4bbq_A 8 RKCKACVQGE----CG-VCHYCRDMKKFGGPGRMKQSCV--LRQCLAPRLPHSVTCSL-CGEVDQNEETQD----FEKKL 75 (117)
T ss_dssp SCSHHHHSCC----CS-CSHHHHHSGGGTSCCCSCCCCG--GGCCSSCBCCTTCBCTT-TCCBCCHHHHCC----GGGSC
T ss_pred CcCcCcCCcC----CC-CCCCCcCCcccCCCCccccchh--heeeccccccccccccc-cCcccccccccc----cCcce
Confidence 4566666653 76 7999999998655432221100 00000000011111110 012333332221 23468
Q ss_pred eeccCCCcCCcCcchhhcccC
Q 004169 297 FPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 297 ~kCsv~~CGrfYH~~CL~~~~ 317 (770)
+.| ..|...||..|+....
T Consensus 76 ~~C--~~C~~~~H~~C~~~~~ 94 (117)
T 4bbq_A 76 MEC--CICNEIVHPGCLQMDG 94 (117)
T ss_dssp EEE--TTTCCEECGGGCCSCC
T ss_pred EEe--eecCCeEECCCCCCCc
Confidence 899 8999999999998654
No 86
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.95 E-value=0.026 Score=49.81 Aligned_cols=33 Identities=24% Similarity=0.839 Sum_probs=26.5
Q ss_pred cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 277 hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
..|.+|+... ...++.| ..|+|.||..|+.+.-
T Consensus 16 ~~C~VC~~~t------~~~l~pC--RvC~RvfH~~CL~r~g 48 (89)
T 1wil_A 16 EMCDVCEVWT------AESLFPC--RVCTRVFHDGCLRRMG 48 (89)
T ss_dssp CCCTTTCCCC------SSCCSSC--SSSSSCCCHHHHHHHT
T ss_pred cccCcccccc------ccceecc--ccccccccHhhccccc
Confidence 4588887654 3589999 8999999999998743
No 87
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.74 E-value=0.12 Score=51.46 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=29.6
Q ss_pred cccccCcCCccCccCccceeeccccccccccccCCC
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
++|.+|+...+.++.+..|+.|+.|..+||..|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi 38 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENL 38 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhcccc
Confidence 578899998765544567999999999999999843
No 88
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=90.39 E-value=0.17 Score=49.23 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=32.9
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.-||.||.++++. +++|++|||+|||...|+..+.++
T Consensus 10 ~~KL~ei~~~~~~-~~~g~~VLDlG~G~G~~s~~la~~ 46 (191)
T 3dou_A 10 AFKLEFLLDRYRV-VRKGDAVIEIGSSPGGWTQVLNSL 46 (191)
T ss_dssp HHHHHHHHHHHCC-SCTTCEEEEESCTTCHHHHHHTTT
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEEeecCCHHHHHHHHc
Confidence 4599999999875 689999999999999999998765
No 89
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=90.32 E-value=0.16 Score=48.21 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=33.6
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.-||.++.+++. ++++|++|+|++||..-++..+.+++
T Consensus 7 ~~kl~~~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~ 44 (201)
T 2plw_A 7 AYKLIELDNKYL-FLKKNKIILDIGCYPGSWCQVILERT 44 (201)
T ss_dssp HHHHHHHHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHc
Confidence 458999999987 47899999999999999999988775
No 90
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.31 E-value=0.15 Score=46.18 Aligned_cols=60 Identities=20% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCcccccCcCCccCccCccceeecc-ccccccccccCCCCccccccchhhhhhhhhcccCCCceEEEccCCcccc
Q 004169 341 PVHKCFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPTEITFSDADENNFQRAWVDLLPNNRILIYCLEHKIIS 414 (770)
Q Consensus 341 PlH~C~~C~~~edk~~~e~qLi~C~-RCP~AYH~kCLP~~~~f~~~~~e~~~raW~~lL~~~~~LI~C~~H~i~~ 414 (770)
|...|..|.+..+. +..++.|. .|..|||..|+.-... . ...|...+..-++|+.+....
T Consensus 2 ~~~~C~iC~~p~~~---~~~mi~Cdd~C~~WfH~~CVglt~~-------~----~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 2 LVYPCGACRSEVND---DQDAILCEASCQKWFHRECTGMTES-------A----YGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCCBCTTTCSBCCT---TSCEEECTTTTCCEEEGGGTTCCHH-------H----HHHHHHCTTEEECCHHHHHTT
T ss_pred CcCCCCCCCCccCC---CCCEEEecCCcccccccccCCcCHH-------H----HHhhccCCCCCEECccccCcC
Confidence 45678899998643 34699998 9999999999865321 0 011111123568999887643
No 91
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=89.79 E-value=0.85 Score=50.90 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHhhcCCCcccccc--cCCchhhhhHHHHh--------hcccccc--ccccccccccccCcccchhhHHHHHHhhhcee
Q 004169 631 LEMLDGGCDIEDAKA--VCPPEILCQIFQWK--------RKLDVYL--APFLHGMRYTSFGRHFTKVEKLKEIVDRLHWY 698 (770)
Q Consensus 631 l~~le~g~~i~~aka--~c~p~~l~q~~~w~--------~kl~~~l--apfl~g~rytsfgrhftk~ekl~~iv~~lhwy 698 (770)
+..++.|.. .-++. .|.++.+.+|+.+- ++|+=|- ++..|| .|.++.+.+|+++|.
T Consensus 103 ~~~~~~g~~-~~~~~~~~~~~~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYG---------Et~~~~i~~il~~l~-- 170 (438)
T 3uwp_A 103 IHQLWKGTT-QPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYG---------ETSFDLVAQMIDEIK-- 170 (438)
T ss_dssp HHHHHHSSS-CCCCCSBCCCHHHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGG---------GTHHHHHHHHHHHHC--
T ss_pred HHHhhcccc-CcccccCCCCHHHHHHHHHHHHhhcCCCHHHhcCcccCCCcccC---------CCCHHHHHHHHHhcC--
Confidence 556666633 33332 58888999998875 4444443 334444 478999999999995
Q ss_pred eecCCeEEeeccCCChhhhHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+++|++|||++||...+...|-.
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~ 193 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAA 193 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHH
Confidence 78999999999999999877653
No 92
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=89.79 E-value=0.16 Score=50.31 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.7
Q ss_pred ccCCCCc----eeecCCcccccccccccc
Q 004169 221 ICDDGGD----VTFCDGRCLRSFHATITA 245 (770)
Q Consensus 221 IC~~gGe----LL~CdG~C~RsFH~~Cl~ 245 (770)
+|+.+|+ .|.|. .|.++||..|+.
T Consensus 9 YCG~~~~~~~~mLqC~-~C~qWFH~~Cl~ 36 (177)
T 3rsn_A 9 DEENGRQLGEVELQCG-ICTKWFTADTFG 36 (177)
T ss_dssp --CTTCCTTSCEEECT-TTCCEEEGGGGT
T ss_pred EcCCCCCCCceeEeec-cccceecHHHhc
Confidence 5787776 88898 499999999975
No 93
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=89.14 E-value=0.24 Score=51.61 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=32.2
Q ss_pred cccCcccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 676 tsfgrhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.+||+||. ..+-+..|++.+.. .+|++|+|++||...|+..|.
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La 61 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLL 61 (299)
T ss_dssp -----CEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHT
T ss_pred hccccceecCHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHH
Confidence 58999994 77788889998864 799999999999998887664
No 94
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=88.94 E-value=0.084 Score=50.98 Aligned_cols=31 Identities=35% Similarity=0.852 Sum_probs=24.4
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
+| .|+..++ ..+.++.|+.|+.|||..|+..
T Consensus 10 ~C-~C~~~~~---~~~~mi~Cd~C~~WfH~~Cv~~ 40 (174)
T 2ri7_A 10 YC-ICKTPED---ESKFYIGCDRCQNWYHGRCVGI 40 (174)
T ss_dssp ET-TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred Ee-eCCCCCC---CCCCEeECCCCCchhChhhcCC
Confidence 56 7877653 2357999999999999999854
No 95
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=88.70 E-value=0.33 Score=50.17 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=34.4
Q ss_pred cccCcccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 676 tsfgrhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+||.||. ..+-+..|++.+.. .+|++|+|+.||...|+..|.+
T Consensus 4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~ 48 (285)
T 1zq9_A 4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLE 48 (285)
T ss_dssp ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHH
T ss_pred CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHh
Confidence 47999995 77888899999874 7999999999999988877654
No 96
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.64 E-value=0.23 Score=39.42 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=24.4
Q ss_pred cccCcCCccCccCccceeecc-ccccccccccCCC
Q 004169 345 CFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPT 378 (770)
Q Consensus 345 C~~C~~~edk~~~e~qLi~C~-RCP~AYH~kCLP~ 378 (770)
|.+|++..+. +..++.|+ .|..+||..|+..
T Consensus 5 cc~C~~p~~~---~~~mI~Cd~~C~~WfH~~Cvgl 36 (52)
T 2kgg_A 5 AQNCQRPCKD---KVDWVQCDGGCDEWFHQVCVGV 36 (52)
T ss_dssp CTTCCCCCCT---TCCEEECTTTTCCEEETTTTTC
T ss_pred CCCCcCccCC---CCcEEEeCCCCCccCcccccCC
Confidence 6677776642 35799999 9999999999754
No 97
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.48 E-value=0.13 Score=43.74 Aligned_cols=30 Identities=27% Similarity=0.841 Sum_probs=24.1
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
+| .|++..+ ...|+.|+.|..+||..|+..
T Consensus 18 ~C-~C~~~~~----~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 18 YC-ICRQPHN----NRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp CS-TTCCCCC----SSCEEECSSSCCEEEHHHHSC
T ss_pred EE-ECCCccC----CCCEEEeCCCCCcEeCeEEcc
Confidence 55 6888664 247999999999999999855
No 98
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.27 E-value=0.23 Score=41.74 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=24.5
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
+| .|++..+ ...|++|+.|..+||..|+...
T Consensus 21 ~C-iC~~~~~----~~~MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 21 TC-FCMKPFA----GRPMIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp CS-TTCCCCT----TCCEEECTTTCCEEETTTTTCC
T ss_pred Ee-ECCCcCC----CCCEEECCCCCccccccccCcC
Confidence 55 7877654 3479999999999999998653
No 99
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=87.13 E-value=0.19 Score=45.36 Aligned_cols=37 Identities=19% Similarity=0.500 Sum_probs=26.6
Q ss_pred eeecCCccccccccccccCccccccccCCccc------ccCCCCcccCcccccc
Q 004169 228 VTFCDGRCLRSFHATITAGKNALCQSLGYTQA------QIDAVPNFLCQNCVYQ 275 (770)
Q Consensus 228 LL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~------ev~~~~~W~C~eC~~~ 275 (770)
+|.|| .|.+|||..| +|++.+ +.+....|.|+.|...
T Consensus 2 mi~c~-~c~~w~H~~c----------~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 2 MMQCG-KCDRWVHSKC----------ENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCS-CCSSCHHHHH----------CCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccccc-cCCCccCCcc----------cccCHHHHHHHhhccccceeeCcccccc
Confidence 68999 5999999997 455542 2223457999999753
No 100
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=86.77 E-value=0.46 Score=44.67 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=33.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..||.||.+++.. +++|++|||++||..-++..+.+++
T Consensus 7 ~~kl~~l~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~~ 44 (196)
T 2nyu_A 7 AFKLLEVNERHQI-LRPGLRVLDCGAAPGAWSQVAVQKV 44 (196)
T ss_dssp HHHHHHHHHHHCC-CCTTCEEEEETCCSCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 4688999888875 7899999999999999999988775
No 101
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=86.53 E-value=0.2 Score=41.77 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=26.4
Q ss_pred cccccCcCCccCccCccceeecc-ccccccccccCCC
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICR-RCPKAYHRKCLPT 378 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~-RCP~AYH~kCLP~ 378 (770)
-.|..|++..+. +..++.|+ .|..+||..|+--
T Consensus 9 ~~C~~C~~p~~~---~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 9 YPCGICTNEVND---DQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp CBCTTTCSBCCT---TSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCccCCCccCC---CCCeEecccCccccCchhccCC
Confidence 357799997653 34799999 9999999999744
No 102
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=86.46 E-value=0.6 Score=48.62 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=38.2
Q ss_pred cccCcccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 676 tsfgrhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+||.||. ...-+..|++.+. +++|++|+|+.||...++..|.++.
T Consensus 18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~ 64 (279)
T 3uzu_A 18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARL 64 (279)
T ss_dssp CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHH
T ss_pred ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhC
Confidence 58999996 5566777888886 4799999999999999999887654
No 103
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=86.44 E-value=0.55 Score=47.28 Aligned_cols=45 Identities=13% Similarity=0.361 Sum_probs=33.5
Q ss_pred cccCcccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 676 TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 676 tsfgrhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+||.||. ...-+..|++.+. +.+|++|+|+.||...++..+.++
T Consensus 6 k~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~ 51 (244)
T 1qam_A 6 IKHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQR 51 (244)
T ss_dssp ----CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHc
Confidence 47999995 5666788888887 478999999999999988876543
No 104
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=86.39 E-value=1.2 Score=42.42 Aligned_cols=42 Identities=7% Similarity=0.200 Sum_probs=35.8
Q ss_pred cCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 678 fgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+|++++.+.-+..+++.|.. ++|++|+|+.||..-++..|.+
T Consensus 56 ~~~~~~~~~~~~~~~~~l~~--~~~~~vLdiG~G~G~~~~~la~ 97 (210)
T 3lbf_A 56 QGQTISQPYMVARMTELLEL--TPQSRVLEIGTGSGYQTAILAH 97 (210)
T ss_dssp TSCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHH
T ss_pred CCCEeCCHHHHHHHHHhcCC--CCCCEEEEEcCCCCHHHHHHHH
Confidence 78888899888889888864 7999999999999888776654
No 105
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.04 E-value=0.22 Score=42.68 Aligned_cols=31 Identities=23% Similarity=0.642 Sum_probs=24.4
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
+| .|+...+ ....|++|+.|..+||..|+..
T Consensus 14 ~C-~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl 44 (79)
T 1wep_A 14 YC-LCRQPYN---VNHFMIECGLCQDWFHGSCVGI 44 (79)
T ss_dssp CS-TTSCSCC---SSSCEEEBTTTCCEEEHHHHTC
T ss_pred EE-EcCCccC---CCCceEEcCCCCCcEEeeecCc
Confidence 45 7887654 2357999999999999999754
No 106
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=85.87 E-value=0.86 Score=44.13 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=41.2
Q ss_pred cccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 672 GMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 672 g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
...+..+|.++..+.-...+++.|.-++++|++|+|++||..-++..|.+.+
T Consensus 48 ~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~ 99 (226)
T 1i1n_A 48 SPQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMV 99 (226)
T ss_dssp SCEEEETTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred CccccCCCceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHh
Confidence 3344556788888887777888887678999999999999998888776554
No 107
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=84.96 E-value=0.45 Score=39.96 Aligned_cols=32 Identities=22% Similarity=0.615 Sum_probs=23.7
Q ss_pred ccccCcCCccCccCccceeeccccccccccccCCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
+| .|+...+. ...|+.|+.|..+||..|+...
T Consensus 18 ~C-~C~~~~~~---g~~mI~Cd~C~~W~H~~Cvg~~ 49 (72)
T 1wee_A 18 DC-KCGTKDDD---GERMLACDGCGVWHHTRCIGIN 49 (72)
T ss_dssp CC-TTCCCSCC---SSCEEECSSSCEEEETTTTTCC
T ss_pred Ee-eCCCccCC---CCcEEECCCCCCccCCeeeccC
Confidence 45 47776432 2369999999999999998653
No 108
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=84.66 E-value=1.2 Score=48.75 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhcCCC-----cccccccC-CchhhhhHHHHhhccccc-cccccccccc------------cccCcccch
Q 004169 624 VKAVRAALEMLDGGCD-----IEDAKAVC-PPEILCQIFQWKRKLDVY-LAPFLHGMRY------------TSFGRHFTK 684 (770)
Q Consensus 624 v~a~~~al~~le~g~~-----i~~aka~c-~p~~l~q~~~w~~kl~~~-lapfl~g~ry------------tsfgrhftk 684 (770)
.++++.+++.|+.... .+++...- +|..|.+|..--+.+... +.|=+-|.=| ...|-|||.
T Consensus 77 ~~~~~~~~~~l~~~~~~~~~if~~~~~~~~~~~~l~~li~~~~~~~~~~~~~d~~G~~yE~ll~~~~~~~~~~~G~fyTP 156 (445)
T 2okc_A 77 VKQYEETLKLLSELDNLIGTIYTKAQNKIDKPVYLKKVITMIDEEQWLIMDGDVKGAIYESILEKNGQDKKSGAGQYFTP 156 (445)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHTTTCCCCCCCHHHHHHHHHHHHTSCCTTSCSHHHHHHHHHHHHHHHTCTTTCCGGGCCC
T ss_pred HHHHHHHHHHHhhccchhhhhhhhhhhccCCHHHHHHHHHhhhccCCCCCChhHHHHHHHHHHHHHHhhccccCCcccCc
Confidence 4456666777764311 12222222 466777776554444321 2233334333 246889999
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+=.+-||+.+.+ ++|++|+|.+||+.-|...+.+.+
T Consensus 157 ~~v~~~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l 193 (445)
T 2okc_A 157 RPLIQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYM 193 (445)
T ss_dssp HHHHHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCCCEEeccCCCcchHHHHHHHHH
Confidence 8866667776654 679999999999999987776665
No 109
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=84.59 E-value=0.87 Score=44.14 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=36.8
Q ss_pred cCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 678 fgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+|++.+.++-+..+++.++ +.+|++|+|+.||...++..|.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~ 91 (231)
T 1vbf_A 49 PGINTTALNLGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEI 91 (231)
T ss_dssp TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHH
Confidence 5778889888999999986 689999999999999988877654
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=84.37 E-value=0.45 Score=40.30 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=23.6
Q ss_pred cccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
.+| .|++..+ +.|+.|+. |+ .+||..|+..
T Consensus 17 ~~C-~C~~~~~-----g~MI~CD~~~C~~~wfH~~Cvgl 49 (71)
T 1wen_A 17 TYC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGL 49 (71)
T ss_dssp CCS-TTCCCSC-----SSEECCSCSSCSCCCEETTTTTC
T ss_pred CEE-ECCCCCC-----CCEeEeeCCCCCCccEecccCCc
Confidence 367 6887543 36999999 99 6999999864
No 111
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=84.07 E-value=0.33 Score=40.08 Aligned_cols=29 Identities=28% Similarity=0.757 Sum_probs=23.1
Q ss_pred ccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
+| .|++..+ +.|+.|+. || .+||..|+..
T Consensus 13 yC-~C~~~~~-----g~MI~CD~c~C~~~WfH~~Cvgl 44 (62)
T 2g6q_A 13 YC-LCNQVSY-----GEMIGCDNEQCPIEWFHFSCVSL 44 (62)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTC
T ss_pred EE-ECCCCCC-----CCeeeeeCCCCCcccEecccCCc
Confidence 56 7877543 36999999 88 9999999874
No 112
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.60 E-value=0.43 Score=42.48 Aligned_cols=30 Identities=23% Similarity=0.627 Sum_probs=23.7
Q ss_pred cccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
.+| .|++..+ +.|+.|+. |+ .|||..|+..
T Consensus 37 ~yC-iC~~~~~-----g~MI~CD~~dC~~~WfH~~CVgl 69 (91)
T 1weu_A 37 TYC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGL 69 (91)
T ss_dssp BCS-TTCCBCC-----SCCCCCSCSSCSCCCCCSTTTTC
T ss_pred cEE-ECCCCCC-----CCEeEecCCCCCCCCEecccCCc
Confidence 356 8887653 36999999 88 7999999864
No 113
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=83.59 E-value=0.99 Score=40.66 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=32.1
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+|.++++++. ++++|+.|+|+.||...|+..+.+.+
T Consensus 8 ~~l~~~~~~~~-~~~~~~~vLd~G~G~G~~~~~l~~~~ 44 (180)
T 1ej0_A 8 FKLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQI 44 (180)
T ss_dssp HHHHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCCCeEEEeCCCCCHHHHHHHHHh
Confidence 46788888876 58899999999999999999988876
No 114
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=83.43 E-value=0.37 Score=39.39 Aligned_cols=29 Identities=28% Similarity=0.745 Sum_probs=23.0
Q ss_pred ccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
+| .|++..+ +.|+.|+. |+ .+||..|+..
T Consensus 11 yC-~C~~~~~-----g~mi~CD~~~C~~~wfH~~Cvgl 42 (59)
T 3c6w_A 11 YC-LCHQVSY-----GEMIGCDNPDCPIEWFHFACVDL 42 (59)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTC
T ss_pred EE-ECCCCCC-----CCeeEeeCCCCCCCCEecccCCc
Confidence 56 7877542 36999999 99 6999999874
No 115
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=82.98 E-value=0.62 Score=48.92 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=33.8
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.-||.||.+| + ++++|++|||+-|+-.-+|+...++
T Consensus 59 ayKL~EIdeK-~-likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 59 TAKLRWLVER-R-FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp HHHHHHHHHT-T-SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred HHHHHHHHHc-C-CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 6799999999 6 9999999999999999999998875
No 116
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=82.79 E-value=0.4 Score=39.19 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=22.9
Q ss_pred ccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
+| .|++..+ +.|+.|+. |+ .+||..|+..
T Consensus 12 ~C-~C~~~~~-----g~mi~CD~cdC~~~wfH~~Cvgl 43 (60)
T 2vnf_A 12 YC-LCHQVSY-----GEMIGCDNPDCSIEWFHFACVGL 43 (60)
T ss_dssp ET-TTTEECC-----SEEEECSCTTCSSCEEETGGGTC
T ss_pred EE-ECCCcCC-----CCEEEeCCCCCCCceEehhcCCC
Confidence 56 6877543 37999999 88 7999999873
No 117
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=82.55 E-value=0.81 Score=44.67 Aligned_cols=50 Identities=24% Similarity=0.592 Sum_probs=37.9
Q ss_pred CcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceec
Q 004169 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTC 340 (770)
Q Consensus 276 qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~C 340 (770)
+..|.+|+. +++|+-|....|.+.|=..||..+..|.. + ..+....+|.|
T Consensus 79 ~~yC~wC~~--------Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~------~-~~i~~~d~W~C 128 (159)
T 3a1b_A 79 QSYCTICCG--------GREVLMCGNNNCCRCFCVECVDLLVGPGA------A-QAAIKEDPWNC 128 (159)
T ss_dssp BSSCTTTSC--------CSEEEECSSTTTCCEEEHHHHHHHTCTTH------H-HHHHTSSSCCC
T ss_pred cceeeEecC--------CCeEEeeCCCCCCCchhHHHHHHhcCHhH------H-HHHhccCCCEE
Confidence 457889984 46999998889999999999999887642 2 23455567744
No 118
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=82.24 E-value=3.2 Score=47.04 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhcCCC------cccccccC-CchhhhhHHHHhhccccc-c----cccccccccc------------cc
Q 004169 623 SVKAVRAALEMLDGGCD------IEDAKAVC-PPEILCQIFQWKRKLDVY-L----APFLHGMRYT------------SF 678 (770)
Q Consensus 623 sv~a~~~al~~le~g~~------i~~aka~c-~p~~l~q~~~w~~kl~~~-l----apfl~g~ryt------------sf 678 (770)
-.++++.+++.|+.+.. .+++...- +|..|.+|..--+.+... + .|=+-|.=|- ..
T Consensus 69 ~~~~~~~~~~~l~~~~~~~~~~iF~~~~~~~~~~~~L~~li~~i~~~~~~~~~~~~~~d~lG~~YE~ll~~~a~~~~~~~ 148 (541)
T 2ar0_A 69 QLQFYRKMLVHLGEDDKKLVQAVFHNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGA 148 (541)
T ss_dssp HHHHHHHHHHHHTSSSCHHHHHHHTTCCCCCCCHHHHHHHHHHHHTCCC-------------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhhhhhccCCHHHHHHHHHHHhhcCCcccccccChhHHHHHHHHHHHHHHHhccccC
Confidence 45667777888875411 12232222 467888887765555432 1 3334443332 35
Q ss_pred CcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHHHhC
Q 004169 679 GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMG 727 (770)
Q Consensus 679 grhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~~~~ 727 (770)
|-+||..+=.+-||+-+.. ++|++|+|.|||+.-|...+-+.|.+.+
T Consensus 149 G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~ 195 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQT 195 (541)
T ss_dssp -CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTT
T ss_pred CeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhh
Confidence 8899988754555665543 5799999999999999988877776443
No 119
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=82.13 E-value=0.91 Score=46.57 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=32.1
Q ss_pred cccCcccch-hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 676 TSFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 676 tsfgrhftk-~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.+||.||.. ..=+..|++.+. +.+|++|+|+.||...++..|-
T Consensus 5 k~~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La 48 (255)
T 3tqs_A 5 KRFGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLL 48 (255)
T ss_dssp ----CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHT
T ss_pred CcCCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHH
Confidence 489999964 566777888886 4789999999999998887664
No 120
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=81.79 E-value=1.4 Score=42.64 Aligned_cols=56 Identities=20% Similarity=0.349 Sum_probs=42.4
Q ss_pred cccccccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 668 PFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 668 pfl~g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
++-....+..+|++.+.+.-...+++.|.-++++|++|+|+.||..-++..|.+.+
T Consensus 47 ~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~ 102 (227)
T 2pbf_A 47 PYIDTPVYISHGVTISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKM 102 (227)
T ss_dssp TTSSSCEEEETTEEECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHT
T ss_pred cCCCCccccCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHh
Confidence 34445555667888888777777777775568899999999999998887776554
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.56 E-value=0.42 Score=40.90 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=23.7
Q ss_pred ccccCcCCccCccCccceeecc--ccccccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICR--RCPKAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~--RCP~AYH~kCLP~ 378 (770)
+| +|++..+ .+.|+.|. .|+.|||..|+..
T Consensus 18 ~C-iC~~~~~----~g~MI~CD~~~C~~W~H~~CVgi 49 (78)
T 1wew_A 18 RC-VCGNSLE----TDSMIQCEDPRCHVWQHVGCVIL 49 (78)
T ss_dssp CC-SSCCCCC----CSCEEECSSTTTCCEEEHHHHSC
T ss_pred Ee-ECCCcCC----CCCEEEECCccCCccccCEEEcc
Confidence 45 6888632 34799999 9999999999754
No 122
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=81.36 E-value=0.83 Score=45.60 Aligned_cols=45 Identities=18% Similarity=0.423 Sum_probs=38.7
Q ss_pred cccCccc-chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 676 TSFGRHF-TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 676 tsfgrhf-tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+||.|| +....+..|++.+. +.+|++|+|+.||...++..+.++
T Consensus 5 k~~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~ 50 (245)
T 1yub_A 5 IKYSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI 50 (245)
T ss_dssp CCSCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHh
Confidence 4799976 56778889999886 579999999999999999998775
No 123
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=80.82 E-value=2.6 Score=47.93 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=36.7
Q ss_pred cccCcccchhhHHHHHHhhhcee--eecCCeEEeeccCCChhhhHHHHHH
Q 004169 676 TSFGRHFTKVEKLKEIVDRLHWY--VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 676 tsfgrhftk~ekl~~iv~~lhwy--v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+.|-+||+.+=-+-||+-+.-. -++|.+|+|.|||+..|-.-+.+.|
T Consensus 194 k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l 243 (542)
T 3lkd_A 194 KKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYS 243 (542)
T ss_dssp -CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHC
T ss_pred ccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHH
Confidence 35799999998766667666533 2489999999999999987665554
No 124
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=80.74 E-value=2 Score=41.87 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=41.3
Q ss_pred cccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHH
Q 004169 676 TSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (770)
Q Consensus 676 tsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~ 724 (770)
..+|++++.+.-...+++.|.-++++|++|+|+.||+.-++..|.+.+.
T Consensus 59 ~~~~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~ 107 (227)
T 1r18_A 59 IGGGVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIK 107 (227)
T ss_dssp EETTEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred cCCCCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcc
Confidence 4567888888888888888866689999999999999999988877654
No 125
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=79.47 E-value=0.91 Score=35.83 Aligned_cols=29 Identities=17% Similarity=0.427 Sum_probs=22.6
Q ss_pred cCcCCccCccCccceeeccccccccccccCCCC
Q 004169 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
.|++..+ ++.|+.|+.|..+||..|+...
T Consensus 8 ~C~~~~~----~~~MI~Cd~C~~W~H~~Cvgi~ 36 (52)
T 3o7a_A 8 FCMKPFA----GRPMIECNECHTWIHLSCAKIR 36 (52)
T ss_dssp TTCCBCT----TCCEEECTTTCCEEETTTTTCC
T ss_pred EeCCcCC----CCCEEEcCCCCccccccccCCC
Confidence 4666543 3489999999999999998653
No 126
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=79.38 E-value=1.1 Score=45.68 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=35.8
Q ss_pred cccCcccch-hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 676 TSFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 676 tsfgrhftk-~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+||.||-. ..-+..|++.+. +.+|++|+|+.||...++..+-++
T Consensus 7 k~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~ 52 (249)
T 3ftd_A 7 KSFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH 52 (249)
T ss_dssp -CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS
T ss_pred CcccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc
Confidence 489999965 566778888886 468999999999999888776543
No 127
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=79.21 E-value=0.89 Score=47.72 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.6
Q ss_pred hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 684 k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
..-||.+|.++ =++++|++|||+|||..-|+..+-++
T Consensus 67 ~a~KL~~i~~~--~~~~~g~~VLDlGcG~G~~s~~la~~ 103 (305)
T 2p41_A 67 GSAKLRWFVER--NLVTPEGKVVDLGCGRGGWSYYCGGL 103 (305)
T ss_dssp HHHHHHHHHHT--TSSCCCEEEEEETCTTSHHHHHHHTS
T ss_pred HHHHHHHHHHc--CCCCCCCEEEEEcCCCCHHHHHHHhc
Confidence 45689999999 46799999999999999999988776
No 128
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=79.05 E-value=1.4 Score=48.56 Aligned_cols=37 Identities=27% Similarity=0.662 Sum_probs=31.5
Q ss_pred CcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCC
Q 004169 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPD 320 (770)
Q Consensus 276 qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~ 320 (770)
+..|..|+. +++|+-|....|.+.|=..||.....|.
T Consensus 93 ~~yCr~C~~--------Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~ 129 (386)
T 2pv0_B 93 QSYCSICCS--------GETLLICGNPDCTRCYCFECVDSLVGPG 129 (386)
T ss_dssp BCSCTTTCC--------CSSCEECCSTTCCCEECHHHHHHHTCTT
T ss_pred cccceEcCC--------CCeEEEeCCCCCCcchHHHHHHHhcChh
Confidence 457889984 4689999888999999999999988765
No 129
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=78.90 E-value=1 Score=37.50 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=20.7
Q ss_pred cCcCCccCccCccceeecc--ccccccccccCC
Q 004169 347 VCQQSEDMNVEDLQLAICR--RCPKAYHRKCLP 377 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~--RCP~AYH~kCLP 377 (770)
.|+...+ .+.|+.|. +|..+||..|+.
T Consensus 14 ~C~~~~~----~g~mI~CD~~~C~~W~H~~Cvg 42 (68)
T 2rsd_A 14 ICSSTMV----NDSMIQCEDQRCQVWQHLNCVL 42 (68)
T ss_dssp TTCCCSC----CSCEEECSCTTTCEEEETTTSC
T ss_pred ECCCCcC----CCCEEEECCCCCCCeEchhhCC
Confidence 4766433 34799998 799999999974
No 130
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=78.66 E-value=0.77 Score=40.32 Aligned_cols=31 Identities=26% Similarity=0.688 Sum_probs=24.3
Q ss_pred CCcccccccCC--CCceeec-CCccccccccccc
Q 004169 214 NYFAVCAICDD--GGDVTFC-DGRCLRSFHATIT 244 (770)
Q Consensus 214 ~~d~VC~IC~~--gGeLL~C-dG~C~RsFH~~Cl 244 (770)
.+...|.+|.+ .|..|.| .+.|.++||+.|.
T Consensus 15 R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 15 RWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp CCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHH
T ss_pred HhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHH
Confidence 45678999985 3766655 6789999999994
No 131
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=78.17 E-value=1.1 Score=46.10 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=31.4
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
..||.+|.++ =++++|++|||++||...|+..+.++
T Consensus 60 a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 95 (265)
T 2oxt_A 60 TAKLAWMEER--GYVELTGRVVDLGCGRGGWSYYAASR 95 (265)
T ss_dssp HHHHHHHHHH--TSCCCCEEEEEESCTTSHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCCCCCEEEEeCcCCCHHHHHHHHc
Confidence 5788899998 46789999999999999999988765
No 132
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=78.11 E-value=1.7 Score=45.07 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=46.8
Q ss_pred CCchhhhhHHHHhhccccccccccccccc-cccCcccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 647 CPPEILCQIFQWKRKLDVYLAPFLHGMRY-TSFGRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 647 c~p~~l~q~~~w~~kl~~~lapfl~g~ry-tsfgrhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
-.|..+++|++- ||.|- .+||.||- ...-+..|++.+. +++| +|+|.-||...++..|-++
T Consensus 5 ~~~~~~~~~~~~------------~~~~~~k~~GQnfL~d~~i~~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~ 67 (271)
T 3fut_A 5 ASPQSVRALLER------------HGLFADKRFGQNFLVSEAHLRRIVEAAR--PFTG-PVFEVGPGLGALTRALLEA 67 (271)
T ss_dssp CCHHHHHHHHHH------------TTCCCSTTSSCCEECCHHHHHHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHT
T ss_pred cCHHHHHHHHHh------------cCCCccccCCccccCCHHHHHHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHc
Confidence 357777777654 45553 58999995 6667788999886 4788 9999999999999877553
No 133
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=77.97 E-value=2.4 Score=40.46 Aligned_cols=44 Identities=9% Similarity=0.323 Sum_probs=37.1
Q ss_pred cCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 678 fgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.|++++.++-+..+++.++ +.+|++|+|+.||...++..|.+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 99 (215)
T 2yxe_A 56 YGQTISAIHMVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIV 99 (215)
T ss_dssp TTEEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred CCcEeCcHHHHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHh
Confidence 4677788888889999987 6899999999999988887776655
No 134
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=77.07 E-value=0.11 Score=46.58 Aligned_cols=84 Identities=21% Similarity=0.400 Sum_probs=45.8
Q ss_pred CcccccccCCC-------CceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccc-------------
Q 004169 215 YFAVCAICDDG-------GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVY------------- 274 (770)
Q Consensus 215 ~d~VC~IC~~g-------GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~------------- 274 (770)
.+..|.||.+. |..+.-- .|.-.||..|+...- ...-.||.|..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~---------------~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSL---------------KNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHH---------------TTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHH---------------HhCCCCCCCCCcCccccccccccC
Confidence 35679999763 3322333 699999999974320 00113444432
Q ss_pred -cCcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 275 -QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 275 -~qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
....|.+|...-.........+. ...||+.||..|+..|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~---~~~CgH~fc~~Ci~~~~ 110 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIV---STECGHVFCSQCLRDSL 110 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEE---EETTSBEEEHHHHHHHH
T ss_pred CCCCCCCCCCCccccccccCcceE---eCCCCChhhHHHHHHHH
Confidence 23467777542110000001112 24799999999998774
No 135
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=76.28 E-value=1.3 Score=46.70 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=31.5
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.-||.||-+|. ++++|.+|||.|||-.-||+..-+
T Consensus 76 AfKL~ei~eK~--~Lk~~~~VLDLGaAPGGWsQvAa~ 110 (282)
T 3gcz_A 76 SAKLRWMEERG--YVKPTGIVVDLGCGRGGWSYYAAS 110 (282)
T ss_dssp HHHHHHHHHTT--SCCCCEEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHH
Confidence 57999999994 999999999999999999996543
No 136
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=76.23 E-value=1.2 Score=39.56 Aligned_cols=30 Identities=23% Similarity=0.688 Sum_probs=22.5
Q ss_pred cccccCcCCccCccCccceeeccc--cc-cccccccCCC
Q 004169 343 HKCFVCQQSEDMNVEDLQLAICRR--CP-KAYHRKCLPT 378 (770)
Q Consensus 343 H~C~~C~~~edk~~~e~qLi~C~R--CP-~AYH~kCLP~ 378 (770)
.+| .|++..+ +.|+.|+. || .|||..|+..
T Consensus 27 ~yC-iC~~~~~-----g~MI~CD~c~C~~eWfH~~CVgl 59 (90)
T 2jmi_A 27 VYC-FCRNVSY-----GPMVACDNPACPFEWFHYGCVGL 59 (90)
T ss_dssp CCS-TTTCCCS-----SSEECCCSSSCSCSCEETTTSSC
T ss_pred cEE-EeCCCCC-----CCEEEecCCCCccccCcCccCCC
Confidence 356 7877543 26999999 55 8999999853
No 137
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=76.06 E-value=2.2 Score=45.35 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=34.9
Q ss_pred ccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 675 YTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 675 ytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
-...|.+||..+=.+.|++.+.. ..+++|+|.+||+.-|...+.+++
T Consensus 15 ~~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~ 61 (421)
T 2ih2_A 15 PRSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAH 61 (421)
T ss_dssp ------CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHH
T ss_pred cccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHh
Confidence 35689999988877778887753 568899999999999999988775
No 138
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=75.64 E-value=2.1 Score=40.69 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=32.4
Q ss_pred ccCcccchhhHHHHHHhhhcee-eecCCeEEeeccCCChhhhHHHH
Q 004169 677 SFGRHFTKVEKLKEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 677 sfgrhftk~ekl~~iv~~lhwy-v~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+|..+|..+-...+++.+... ..+|++|+|++||...|+..+..
T Consensus 24 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~ 69 (207)
T 1wy7_A 24 WLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALL 69 (207)
T ss_dssp GGTCCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHH
T ss_pred ceeeecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHH
Confidence 4566677766555666555433 45799999999999999887754
No 139
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=75.42 E-value=0.39 Score=43.03 Aligned_cols=16 Identities=25% Similarity=0.860 Sum_probs=14.1
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|+
T Consensus 30 ~~CgH~fc~~Ci~~~~ 45 (133)
T 4ap4_A 30 TECGHVFCSQCLRDSL 45 (133)
T ss_dssp ETTCCEEEHHHHHHHH
T ss_pred cCCCChhhHHHHHHHH
Confidence 5799999999998875
No 140
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=74.44 E-value=1.5 Score=46.15 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=40.0
Q ss_pred CchhhhhHHHHhhccccccccccccccccccCcccchhhHHHHHHhhhceee--ecCCeEEeeccCCChhhhHHHHHHH
Q 004169 648 PPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYV--RSGDTIVDFCCGANDFSCMMKVKLE 724 (770)
Q Consensus 648 ~p~~l~q~~~w~~kl~~~lapfl~g~rytsfgrhftk~ekl~~iv~~lhwyv--~~gd~ivdfccg~n~f~~~~~~~l~ 724 (770)
+|+.+..++.+- +..|.. --..+|-|||..+-..-|+.-+-|+. .+|.+|+|.|||+.-|...+.+.+.
T Consensus 83 ~~~~~g~~ye~~------~~~~~~--~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~ 153 (344)
T 2f8l_A 83 SNEEIRKGLQLA------LLKGMK--HGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLE 153 (344)
T ss_dssp CHHHHHHHHHHH------HHHHTS--SSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHH
T ss_pred ChhHHHHHHHHH------HHHHhh--cccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHH
Confidence 467777666552 222221 01234777776643222222233332 3688999999999999987776664
No 141
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=74.39 E-value=1.5 Score=46.31 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=32.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
..||.||.+| ..+++|.+|||.+||-.-||+..-++
T Consensus 60 A~KL~ei~ek--~~l~~~~~VLDLGaAPGGWSQvAa~~ 95 (277)
T 3evf_A 60 TAKLRWFHER--GYVKLEGRVIDLGCGRGGWCYYAAAQ 95 (277)
T ss_dssp HHHHHHHHHT--TSSCCCEEEEEETCTTCHHHHHHHTS
T ss_pred HHHHHHHHHh--CCCCCCCEEEEecCCCCHHHHHHHHh
Confidence 6799999999 69999999999999999999976543
No 142
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=74.27 E-value=3.7 Score=40.21 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=36.8
Q ss_pred ccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 677 SFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 677 sfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..|.+.+.+.-...+++.|+ +.+|++|+|+.||..-++..|.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~ 113 (235)
T 1jg1_A 69 PAGQTVSAPHMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV 113 (235)
T ss_dssp STTCEECCHHHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHh
Confidence 45677778888888999886 6899999999999988887776554
No 143
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=73.77 E-value=2.7 Score=41.12 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=35.0
Q ss_pred cccccccc----cccccCcccchhhHHHH-HHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 666 LAPFLHGM----RYTSFGRHFTKVEKLKE-IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 666 lapfl~g~----rytsfgrhftk~ekl~~-iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
++|-+||. .|..+-..- .+|.. +...|.-.+++|++|+|++||+.-++..|.+++
T Consensus 20 ~~~~~Y~~~~~~~y~~~~~~~---~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~ 79 (210)
T 1nt2_A 20 KYGSHYGEKVFDGYREWVPWR---SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIV 79 (210)
T ss_dssp SCCCSSSCCEETTEEECCGGG---CHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHT
T ss_pred CCccccchhhhhhhhhcChhH---HHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHc
Confidence 56777887 454443222 23322 233333457899999999999998887766543
No 144
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=73.72 E-value=4.4 Score=38.49 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.9
Q ss_pred cchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 682 ftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+|+.|-...++++|. +++|++|+|+.||+.-++..+...
T Consensus 23 ~~~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~ 61 (204)
T 3e05_A 23 ITKQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNL 61 (204)
T ss_dssp SCCHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHH
Confidence 377777788888885 689999999999998887766544
No 145
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=73.68 E-value=1.7 Score=45.06 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=31.1
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
..||.+|.++ =++++|++|||++||...|+..+-++
T Consensus 68 a~KL~~i~~~--~~~~~g~~VLDlGcGtG~~s~~la~~ 103 (276)
T 2wa2_A 68 TAKLAWIDER--GGVELKGTVVDLGCGRGSWSYYAASQ 103 (276)
T ss_dssp HHHHHHHHHT--TSCCCCEEEEEESCTTCHHHHHHHTS
T ss_pred HHHHHHHHHc--CCCCCCCEEEEeccCCCHHHHHHHHc
Confidence 4788888888 46789999999999999999988765
No 146
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=73.29 E-value=2.7 Score=44.20 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=32.6
Q ss_pred cccccc-ccCcccch-hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 671 HGMRYT-SFGRHFTK-VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 671 ~g~ryt-sfgrhftk-~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
||.|.. +||.||-. ..=+..|++.+. +++||+|+|+-||...++..|-++
T Consensus 20 ~~~~~~k~~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~ 71 (295)
T 3gru_A 20 HMFKPKKKLGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN 71 (295)
T ss_dssp ----------CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred cCCCCccccCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc
Confidence 555544 79999864 445667888775 479999999999999998877653
No 147
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=72.76 E-value=3.1 Score=39.11 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=28.7
Q ss_pred cchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 682 ftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+-++-++...+.++ ++++|++|+|++||+..++..+.+.+
T Consensus 5 ~~~~~~~~~~~~~~--~~~~~~~vLDlGcG~G~~~~~l~~~~ 44 (197)
T 3eey_A 5 IKNSLGQSHDYIKM--FVKEGDTVVDATCGNGNDTAFLASLV 44 (197)
T ss_dssp CCCHHHHHHHHHHH--HCCTTCEEEESCCTTSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHh--cCCCCCEEEEcCCCCCHHHHHHHHHh
Confidence 33444444444443 68999999999999999888776654
No 148
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=72.45 E-value=2 Score=43.61 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHhhhc-eeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 690 EIVDRLH-WYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 690 ~iv~~lh-wyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.|+..|- .++++|++|+|+|||+..|+..|.+.+
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v 98 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDII 98 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHh
Confidence 3445553 678999999999999999987776654
No 149
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=72.09 E-value=3.2 Score=46.96 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=36.8
Q ss_pred cCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHHH
Q 004169 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQ 725 (770)
Q Consensus 678 fgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~~ 725 (770)
.|-+||+.+=-+-||+-+.. ++|++|+|.|||+.-|-.-.-+.|.+
T Consensus 196 ~GqfyTP~~Vv~lmv~l~~p--~~~~~I~DPacGsGgfL~~a~~~l~~ 241 (530)
T 3ufb_A 196 SGEFYTPRPVVRFMVEVMDP--QLGESVLDPACGTGGFLVEAFEHLER 241 (530)
T ss_dssp CCCCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHT
T ss_pred CceECCcHHHHHHHHHhhcc--CCCCEEEeCCCCcchHHHHHHHHHHH
Confidence 59999998877777777764 68999999999999997655555544
No 150
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=71.97 E-value=0.86 Score=38.59 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=22.6
Q ss_pred cCcCCccCccCccceeeccccccccccccCCC
Q 004169 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
.|++..+ .+..|++|+.|..+||..|+..
T Consensus 14 iC~~~~~---~~~~MI~Cd~C~~WfH~~Cvg~ 42 (75)
T 3kqi_A 14 VCRLPYD---VTRFMIECDACKDWFHGSCVGV 42 (75)
T ss_dssp TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred ECCCcCC---CCCCEEEcCCCCCCEecccccc
Confidence 6776543 2458999999999999999854
No 151
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=71.94 E-value=3.3 Score=39.95 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=23.3
Q ss_pred hceeeecCCeEEeeccC-CChhhhHHHHH
Q 004169 695 LHWYVRSGDTIVDFCCG-ANDFSCMMKVK 722 (770)
Q Consensus 695 lhwyv~~gd~ivdfccg-~n~f~~~~~~~ 722 (770)
+.+++++|++|+|++|| +.-|+..+...
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~ 77 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKF 77 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHH
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHh
Confidence 56778999999999999 88887766554
No 152
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=70.52 E-value=3.2 Score=37.61 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.6
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
|..+-.+.+++.|..++.+|++|+|++||+.-++..+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~ 60 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAA 60 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHH
Confidence 33444455777787777789999999999988876554
No 153
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=70.19 E-value=3.1 Score=31.79 Aligned_cols=16 Identities=44% Similarity=0.968 Sum_probs=14.0
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|+
T Consensus 25 ~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 25 PRCGHGFHAECVDMWL 40 (55)
T ss_dssp SSSCCEECTTHHHHTT
T ss_pred CCCCCcccHHHHHHHH
Confidence 3699999999999886
No 154
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=67.47 E-value=7.3 Score=37.68 Aligned_cols=53 Identities=17% Similarity=0.088 Sum_probs=37.8
Q ss_pred ccccccccccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 665 YLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 665 ~lapfl~g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
...|=+....|+.- ..+|+.+-...++++|. +.+|++|+|+.||+.-++..|.
T Consensus 22 ~~~~g~~d~~f~~~-~~~~~~~~~~~~l~~l~--~~~~~~vLDlGcG~G~~~~~la 74 (204)
T 3njr_A 22 SQVPGRPESAFAHD-GQITKSPMRALTLAALA--PRRGELLWDIGGGSGSVSVEWC 74 (204)
T ss_dssp CSSSCCCGGGSCCS-SCCCCHHHHHHHHHHHC--CCTTCEEEEETCTTCHHHHHHH
T ss_pred CCCCCCCHHHhhcC-CCCCcHHHHHHHHHhcC--CCCCCEEEEecCCCCHHHHHHH
Confidence 34454455555332 36787777777888886 5899999999999988876553
No 155
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=64.83 E-value=3.2 Score=44.21 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=32.6
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
--||.||-++ -++++|.+|||.|||-.-|++.+-++
T Consensus 67 a~KL~ei~ek--~l~~~g~~vlDLGaaPGgWsqva~~~ 102 (300)
T 3eld_A 67 AAKIRWLHER--GYLRITGRVLDLGCGRGGWSYYAAAQ 102 (300)
T ss_dssp HHHHHHHHHH--TSCCCCEEEEEETCTTCHHHHHHHTS
T ss_pred HHHHHHHHHh--CCCCCCCEEEEcCCCCCHHHHHHHHh
Confidence 5699999999 47789999999999999999998765
No 156
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=64.71 E-value=2.8 Score=36.74 Aligned_cols=32 Identities=25% Similarity=0.666 Sum_probs=25.2
Q ss_pred cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhc
Q 004169 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVS 314 (770)
Q Consensus 277 hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~ 314 (770)
-.|.+|++.+ .+--++|....|.+.||+.|-.
T Consensus 18 l~C~iC~~~~------~GAciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 18 LTCYLCKQKG------VGASIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCBTTTTBCC------SSCEEECSCTTTCCEEEHHHHH
T ss_pred CCCcCCCCCC------CcEeEecCCCCCCCcCcHHHHH
Confidence 3588897642 1457899999999999999965
No 157
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.85 E-value=3.1 Score=35.68 Aligned_cols=38 Identities=24% Similarity=0.572 Sum_probs=22.3
Q ss_pred cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 277 hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
..|.||......+ ..-+..|.-...+++||..||..|+
T Consensus 16 ~~C~IC~~~~~~~---~~l~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 16 DICRICHCEGDDE---SPLITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp CCCSSSCCCCCSS---SCEECSSSCCSSSCCEETTHHHHHH
T ss_pred CCCeEcCccccCC---CeeEeccccCCcCCeeCHHHHHHHH
Confidence 3577776433211 1223445333335999999999885
No 158
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.46 E-value=2.9 Score=35.27 Aligned_cols=46 Identities=22% Similarity=0.433 Sum_probs=28.4
Q ss_pred cccCccccccC-cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 266 NFLCQNCVYQE-HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 266 ~W~C~eC~~~q-hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
.-.|.=|.... ..|.+|...... +..+.. ...||+.||..|+..|+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~----~~~~~~--~~~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQ----EDCVVV--WGECNHSFHNCCMSLWV 61 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCT----TTCCEE--EETTSCEEEHHHHHHHT
T ss_pred CCCCcccChhhhccCcccccccCC----CceEEE--eCCCCCccChHHHHHHH
Confidence 34477776543 457777653321 112222 14699999999999886
No 159
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=62.69 E-value=4.6 Score=38.26 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=28.4
Q ss_pred ccCcccchhhHHHHHHhhhce-eeecCCeEEeeccCCChhhhHHHHH
Q 004169 677 SFGRHFTKVEKLKEIVDRLHW-YVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 677 sfgrhftk~ekl~~iv~~lhw-yv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.++.+.|..+-..+++..+.. ...+|++|+|++||...|+..|...
T Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~ 72 (200)
T 1ne2_A 26 YLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL 72 (200)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHT
T ss_pred ceeecCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHc
Confidence 355566665544444433332 2348999999999999999877653
No 160
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=61.74 E-value=1.8 Score=48.85 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=23.2
Q ss_pred cCcCCccCccCccceeeccccccccccccCCC
Q 004169 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
.|++..+ ..+.|++|+.|..+||..|+.-
T Consensus 41 ~C~~~~d---~~~~MIqCd~C~~WfH~~Cvgl 69 (488)
T 3kv5_D 41 VCRQPYD---VNRFMIECDICKDWFHGSCVGV 69 (488)
T ss_dssp TTTEECC---TTSCEEEBTTTCCEEEHHHHTC
T ss_pred eCCCcCC---CCCCeEEccCCCCceeeeecCc
Confidence 7877653 2357999999999999999844
No 161
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=61.07 E-value=2.6 Score=38.05 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=20.2
Q ss_pred cCccceeeccccccccccccCCCC
Q 004169 356 VEDLQLAICRRCPKAYHRKCLPTE 379 (770)
Q Consensus 356 ~~e~qLi~C~RCP~AYH~kCLP~~ 379 (770)
+.+..|+.|..|..+||..|+...
T Consensus 70 ~~~~~m~~C~~C~~~~H~~C~~~~ 93 (117)
T 4bbq_A 70 DFEKKLMECCICNEIVHPGCLQMD 93 (117)
T ss_dssp CGGGSCEEETTTCCEECGGGCCSC
T ss_pred ccCcceEEeeecCCeEECCCCCCC
Confidence 345679999999999999998764
No 162
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=61.00 E-value=6.5 Score=40.72 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=35.3
Q ss_pred cccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 680 RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 680 rhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
...+.+.++..+++.|. +++|++|+|+.||...|+..|.+..
T Consensus 56 q~~~~~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~ 97 (317)
T 1dl5_A 56 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVV 97 (317)
T ss_dssp EEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhc
Confidence 55567788999999986 6899999999999999988876554
No 163
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=60.63 E-value=4.8 Score=41.01 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.-|..-+..|+++|.+|+|+.||...++..|.+
T Consensus 58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~ 90 (261)
T 4gek_A 58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRR 90 (261)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH
Confidence 334455567899999999999999877665543
No 164
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=60.26 E-value=13 Score=40.08 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=54.6
Q ss_pred hcccccccccccccc-ccccCccc-chhhHHHHHHhhhceeeec------CCeEEeeccCCChhhhHHHHH---------
Q 004169 660 RKLDVYLAPFLHGMR-YTSFGRHF-TKVEKLKEIVDRLHWYVRS------GDTIVDFCCGANDFSCMMKVK--------- 722 (770)
Q Consensus 660 ~kl~~~lapfl~g~r-ytsfgrhf-tk~ekl~~iv~~lhwyv~~------gd~ivdfccg~n~f~~~~~~~--------- 722 (770)
..--|.|.+|.+-.+ -.+||+|| +...=+..||+.+. +++ ||+||+.-.|-.-+++.|-++
T Consensus 11 ~~~~~~~~~~~~~~~~kk~lGQnFL~d~~i~~~Iv~~~~--l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvav 88 (353)
T 1i4w_A 11 MASSVPIPGIKDISKLKFFYGFKYLWNPTVYNKIFDKLD--LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLL 88 (353)
T ss_dssp -----CCCCCCTTCSSCCGGGCCCBCCHHHHHHHHHHHC--GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEE
T ss_pred ccccCcccchhhccCCCCCCCcCccCCHHHHHHHHHhcc--CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEE
Confidence 344567777777633 35999999 56777789999997 564 699999999999999988865
Q ss_pred ---------HHHhCCccCCCcccccC
Q 004169 723 ---------LEQMGKSCSFRNYDLIQ 739 (770)
Q Consensus 723 ---------l~~~~~~~~~~~~~~~~ 739 (770)
|++.- .+.|+.||+
T Consensus 89 E~D~~l~~~L~~~~---~~~~l~ii~ 111 (353)
T 1i4w_A 89 EKRSSLYKFLNAKF---EGSPLQILK 111 (353)
T ss_dssp CCCHHHHHHHHHHT---TTSSCEEEC
T ss_pred ecCHHHHHHHHHhc---cCCCEEEEE
Confidence 54543 367888885
No 165
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.75 E-value=2.5 Score=35.67 Aligned_cols=29 Identities=21% Similarity=0.484 Sum_probs=21.4
Q ss_pred ccccCcCCccCccCccceeeccccc---cccccccCCC
Q 004169 344 KCFVCQQSEDMNVEDLQLAICRRCP---KAYHRKCLPT 378 (770)
Q Consensus 344 ~C~~C~~~edk~~~e~qLi~C~RCP---~AYH~kCLP~ 378 (770)
+|. |.+..+ +.|+.|+.|. .+||..|+..
T Consensus 8 yC~-C~~~~~-----g~MI~CD~cdC~~~WfH~~Cvgl 39 (70)
T 1x4i_A 8 YCI-CNQVSY-----GEMVGCDNQDCPIEWFHYGCVGL 39 (70)
T ss_dssp CST-TSCCCC-----SSEECCSCTTCSCCCEEHHHHTC
T ss_pred EEE-cCCCCC-----CCEeEeCCCCCCccCCccccccc
Confidence 453 776543 2799999963 8999999864
No 166
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=59.65 E-value=22 Score=44.76 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=70.7
Q ss_pred cCCccc-eeeeEEEeeee-ccCCcceEEEEecCCceeEcCCCchhHHH----HHHHHHHHhhhhhhhccCCccchhHHHH
Q 004169 57 GDGPWN-FNEQVIAWKFE-LSYAQPEIWVLSKQNNWIMLQSPKKSFKN----IVRTILITVHWLYCVKQNPEASRKYIRE 130 (770)
Q Consensus 57 d~gl~~-v~~~v~aW~~~-l~~~~p~i~vls~~~~Wi~L~kPr~~ye~----~ir~vlitv~~LhfvkknPe~s~k~l~~ 130 (770)
++|+-. -.-.|..|-.+ +++..=-+--++.+-.|-.|.+|.+-|.- +.+++.++.--+-|++.+|+++=..|-+
T Consensus 166 ~~g~~~~~l~~i~ew~i~~f~g~~~~~i~~~t~~a~y~l~~ps~~yap~~~~~~~~~~~~~~vi~~l~~~~~~~~~d~~~ 245 (1330)
T 3av4_A 166 EGGINGKNLGPINQWWLSGFDGGEKVLIGFSTAFAEYILMEPSKEYEPIFGLMQEKIYISKIVVEFLQNNPDAVYEDLIN 245 (1330)
T ss_dssp TTCEEEEEESCCCEEEEECSSSSSCCEEEEECSSCEEEECSBCTTTHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred CCCcchhhccchhhheeeeecCcceEEEEEecchheeeccCchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 457653 35579999999 98866555667899999999999998844 3444555555567778889998666666
Q ss_pred HHHhhccccee---cCCchhhhhhhhhhHHHHh
Q 004169 131 QMLKVFCSYEV---EPSENDLLDHMPISREAAE 160 (770)
Q Consensus 131 ~L~K~fs~f~i---~Ps~~DL~~h~~Lik~~vk 160 (770)
.|+.....=.| .--|+.|+.|=-+|=++++
T Consensus 246 ~~~~~~~~~~~~~~~~~e~~l~~h~q~i~~q~~ 278 (1330)
T 3av4_A 246 KIETTVPPSTINVNRFTEDSLLRHAQFVVSQVE 278 (1330)
T ss_dssp HHHHCCCCTTSSCSCCCHHHHHHTHHHHHHHHH
T ss_pred HHhccCCcccccchhhhHHHHhhhhhhHHhHHh
Confidence 66653211000 2236888888877755544
No 167
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=58.78 E-value=7 Score=44.40 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=35.6
Q ss_pred cccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHH
Q 004169 676 TSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLE 724 (770)
Q Consensus 676 tsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~ 724 (770)
...|-+||..+=.+-||+-+.. ++| +|+|.|||+.-|-.-+.+.|.
T Consensus 222 k~~G~fyTP~~Vv~lmv~ll~p--~~~-~VlDPaCGSG~fLi~a~~~l~ 267 (544)
T 3khk_A 222 KQGGQYYTPKSIVTLIVEMLEP--YKG-RVYDPAMGSGGFFVSSDKFIE 267 (544)
T ss_dssp CCSTTTCCCHHHHHHHHHHHCC--CSE-EEEESSCTTCHHHHHHHHHHH
T ss_pred ccCCeEeCCHHHHHHHHHHHhc--CCC-eEeCcccCcCcHHHHHHHHHH
Confidence 3579999998877777777754 455 999999999999776655554
No 168
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=58.25 E-value=6.5 Score=35.91 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=31.0
Q ss_pred ccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 681 HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 681 hftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+|+.+-...++++|. +.+|++|+|+.||...++..+.+
T Consensus 7 ~~t~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~ 45 (178)
T 3hm2_A 7 QLTKQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLR 45 (178)
T ss_dssp CSHHHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHT
T ss_pred cccHHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHH
Confidence 4577777778888885 58999999999999888776543
No 169
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=57.95 E-value=9.9 Score=35.62 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 691 iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+.+.|.-|+.+|++|+|+.||...++..|.+
T Consensus 32 ~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~ 62 (215)
T 2pxx_A 32 FRALLEPELRPEDRILVLGCGNSALSYELFL 62 (215)
T ss_dssp HHHHHGGGCCTTCCEEEETCTTCSHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEECCCCcHHHHHHHH
Confidence 3334444579999999999999888776654
No 170
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=57.78 E-value=4 Score=39.34 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 691 iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
+++.+-=++.+|.+|+|+.||...++..+
T Consensus 23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l 51 (243)
T 3d2l_A 23 WVAWVLEQVEPGKRIADIGCGTGTATLLL 51 (243)
T ss_dssp HHHHHHHHSCTTCEEEEESCTTCHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEecCCCCHHHHHH
Confidence 33344335678999999999998777655
No 171
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=56.57 E-value=6 Score=37.00 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=29.6
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+.-+-.+.+++.|-.+..+|++|+|+.||+.-|+..|.++
T Consensus 5 ~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~ 44 (170)
T 3q87_B 5 EPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKR 44 (170)
T ss_dssp CCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTT
T ss_pred CcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhc
Confidence 3344455666777666678999999999999888877543
No 172
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=56.21 E-value=8 Score=40.54 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.6
Q ss_pred cccccCcccc----hhhHHHHHHhhh---ceeeecCCeEEeeccCC
Q 004169 674 RYTSFGRHFT----KVEKLKEIVDRL---HWYVRSGDTIVDFCCGA 712 (770)
Q Consensus 674 rytsfgrhft----k~ekl~~iv~~l---hwyv~~gd~ivdfccg~ 712 (770)
+|.+|-+... ++.+..++.+.| +-++++|++|+|+|||+
T Consensus 29 ~Y~~~~~~p~g~~~n~~~y~~l~~~l~~~~l~l~~g~~VLDLGcGs 74 (290)
T 2xyq_A 29 NYGENAVIPKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGS 74 (290)
T ss_dssp SCCCCTTSCTTCCHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCC
T ss_pred hhhcCCcCCCcccccHHHHHHHHHHHHHhhcCCCCCCEEEEeCCCC
Confidence 4555444432 234555555444 56889999999999944
No 173
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=55.73 E-value=12 Score=36.93 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.1
Q ss_pred cCCeEEeeccCCChhhhHHHHHH
Q 004169 701 SGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+|++|+|++||+..|+..+..+.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~ 87 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL 87 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhC
Confidence 68899999999999887765543
No 174
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=55.52 E-value=9.9 Score=38.49 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.++..++++|. +++|++|||+.||...++..|.++
T Consensus 59 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~ 93 (302)
T 3hem_A 59 AKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAE 93 (302)
T ss_dssp HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHh
Confidence 47777888885 689999999999999998877655
No 175
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=54.65 E-value=6.9 Score=41.14 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
-+.++++.|. +++|++|||.+||..-++..|-+++
T Consensus 14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~ 48 (301)
T 1m6y_A 14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHC 48 (301)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHC
T ss_pred HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHC
Confidence 4678888886 5799999999999999999887664
No 176
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=54.64 E-value=8.9 Score=35.12 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=32.2
Q ss_pred cccccccc--ccCcccchh---hHHHHHHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 669 FLHGMRYT--SFGRHFTKV---EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 669 fl~g~ryt--sfgrhftk~---ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
.+.|.+|. +-+..|+.. +-.+.+++.|.. .+|++|+|+.||...++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~~ 70 (194)
T 1dus_A 17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVV--DKDDDILDLGCGYGVIGIAL 70 (194)
T ss_dssp EETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCC--CTTCEEEEETCTTSHHHHHH
T ss_pred ecCCCceEEEeCCCcCCccccchHHHHHHHHccc--CCCCeEEEeCCCCCHHHHHH
Confidence 34455543 333445544 455667777754 49999999999998776654
No 177
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=54.06 E-value=14 Score=33.53 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=29.2
Q ss_pred ccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 681 HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 681 hftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
..+..+-...+++.|+ ..+|++|+|+.||...++..|.
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~ 54 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIA 54 (183)
T ss_dssp CCCCHHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHH
Confidence 3566666667777775 5789999999999998877664
No 178
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=53.68 E-value=23 Score=34.40 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.7
Q ss_pred ecCCeEEeeccCCChhhhHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~ 720 (770)
.+|.+|+|+.||...++..|.
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~ 60 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELA 60 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHH
Confidence 578999999999988876654
No 179
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=53.60 E-value=13 Score=33.83 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=29.7
Q ss_pred cchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 682 ftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
+|..+-...++++++ +.+|++|+|+.||..-++..+.
T Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~ 52 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELA 52 (192)
T ss_dssp CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHH
T ss_pred CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHH
Confidence 677776777788886 5799999999999988876554
No 180
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=52.87 E-value=11 Score=38.30 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.3
Q ss_pred eecCCeEEeeccCCChhhhHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+.+|++|+|++||..-|+..|..+
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~ 140 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKY 140 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH
T ss_pred cCCCCEEEEecCcCCHHHHHHHHh
Confidence 689999999999999999887654
No 181
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.68 E-value=7.6 Score=33.05 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=24.7
Q ss_pred cccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCC
Q 004169 277 HQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLH 318 (770)
Q Consensus 277 hqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~ 318 (770)
..|.+|..... .-.+|. .|++.||..|+.+|+.
T Consensus 16 ~~C~IC~~~i~-------~g~~C~--~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 16 KICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp CBCSSSCCBCS-------SSEECS--SSCCEECHHHHHHHST
T ss_pred CcCcchhhHcc-------cCCccC--CCCchhhHHHHHHHHH
Confidence 45788876542 224784 9999999999999874
No 182
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=52.63 E-value=7.5 Score=36.08 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=20.8
Q ss_pred ceeeecCCeEEeeccCCChhhhHHH
Q 004169 696 HWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 696 hwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.-++.+|++|+|+.||..-++..|.
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~la 41 (185)
T 3mti_A 17 AEVLDDESIVVDATMGNGNDTAFLA 41 (185)
T ss_dssp HTTCCTTCEEEESCCTTSHHHHHHH
T ss_pred HHhCCCCCEEEEEcCCCCHHHHHHH
Confidence 4468899999999999998877654
No 183
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=52.03 E-value=9.2 Score=39.42 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=24.3
Q ss_pred Ccccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 679 GRHFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 679 grhft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
+.|.| +++.|.+-+=++ +-.+||+|+|++||+.-+....
T Consensus 214 ~~h~~~~p~~l~~~~i~~--~~~~~~~vlD~f~GsGt~~~~a 253 (297)
T 2zig_A 214 KDHPAPFPLELAERLVRM--FSFVGDVVLDPFAGTGTTLIAA 253 (297)
T ss_dssp ----CCSCHHHHHHHHHH--HCCTTCEEEETTCTTTHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHH--hCCCCCEEEECCCCCCHHHHHH
Confidence 35665 666655443333 3479999999999998776543
No 184
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=51.97 E-value=6 Score=40.79 Aligned_cols=34 Identities=6% Similarity=-0.090 Sum_probs=28.1
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.+.++.+++.|. +.+|++|+|+.||...++..+.
T Consensus 31 ~~~~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La 64 (261)
T 3iv6_A 31 PSDRENDIFLEN--IVPGSTVAVIGASTRFLIEKAL 64 (261)
T ss_dssp CCHHHHHHHTTT--CCTTCEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcCEEEEEeCcchHHHHHHH
Confidence 567888888885 6899999999999988776554
No 185
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=51.06 E-value=11 Score=37.52 Aligned_cols=34 Identities=21% Similarity=0.433 Sum_probs=26.9
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.-+..|++.|. ..+|.+|+|+.||...++..|.+
T Consensus 21 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~ 54 (261)
T 3ege_A 21 RIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN 54 (261)
T ss_dssp HHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT
T ss_pred HHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh
Confidence 34556666666 47999999999999999988764
No 186
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=51.01 E-value=4.6 Score=36.35 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=14.2
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|+
T Consensus 71 ~~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 71 GVCNHAFHFHCISRWL 86 (106)
T ss_dssp ETTSCEEEHHHHHHHH
T ss_pred cccCcEECHHHHHHHH
Confidence 4799999999999875
No 187
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=50.46 E-value=7.7 Score=39.50 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.5
Q ss_pred eeecCCeEEeeccCCChhhhHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
++++|++|+|++||..-|+..+..
T Consensus 122 ~~~~~~~VLDlgcG~G~~~~~la~ 145 (278)
T 2frn_A 122 VAKPDELVVDMFAGIGHLSLPIAV 145 (278)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHH
T ss_pred hCCCCCEEEEecccCCHHHHHHHH
Confidence 478999999999999988877654
No 188
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=50.26 E-value=14 Score=35.97 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=31.1
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+-+..++++|. +.+|.+|+|+.||...++..|.+++
T Consensus 41 ~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 77 (266)
T 3ujc_A 41 LEATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY 77 (266)
T ss_dssp HHHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc
Confidence 455778888885 7899999999999999998887765
No 189
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=49.98 E-value=6.3 Score=41.11 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.3
Q ss_pred hhceeeecCCeEEeeccCCChhhhHH
Q 004169 694 RLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 694 ~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
|+-=+|++|++|+|.+||..-|+-.+
T Consensus 118 ri~~~~~~g~~VlD~~aG~G~~~i~~ 143 (278)
T 3k6r_A 118 RMAKVAKPDELVVDMFAGIGHLSLPI 143 (278)
T ss_dssp HHHHHCCTTCEEEETTCTTTTTTHHH
T ss_pred HHHHhcCCCCEEEEecCcCcHHHHHH
Confidence 34445899999999999999998654
No 190
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=49.55 E-value=12 Score=39.36 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=34.5
Q ss_pred ccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 673 ~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
++|.|=|-+ ||.++.+++..-+ +|.+|+|+-||...|+..|-+
T Consensus 63 ~~yvsrg~~-----Kl~~~l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~ 105 (291)
T 3hp7_A 63 LRYVSRGGL-----KLEKALAVFNLSV-EDMITIDIGASTGGFTDVMLQ 105 (291)
T ss_dssp CCSSSTTHH-----HHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHH
T ss_pred cccccchHH-----HHHHHHHhcCCCc-cccEEEecCCCccHHHHHHHh
Confidence 368777754 8889999887643 688999999999999977654
No 191
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=49.40 E-value=11 Score=37.56 Aligned_cols=44 Identities=27% Similarity=0.436 Sum_probs=33.4
Q ss_pred ccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 673 ~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
++|.|=|.. ||+++.+.+-. -..|.+|+|+.||..-|+..|.+.
T Consensus 15 ~~yvsrg~~-----kL~~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~ 58 (232)
T 3opn_A 15 LRYVSRGGL-----KLEKALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN 58 (232)
T ss_dssp CCSSSTTHH-----HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT
T ss_pred CCccCCcHH-----HHHHHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc
Confidence 468887755 77778887753 234779999999999999877654
No 192
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=49.22 E-value=7.7 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=24.6
Q ss_pred ccc-hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhH
Q 004169 681 HFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCM 718 (770)
Q Consensus 681 hft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~ 718 (770)
|.| |++.|.+-+= ..+..+||+|+|++||+.-....
T Consensus 193 ~~~~~p~~l~~~~i--~~~~~~~~~vlD~f~GsGtt~~~ 229 (260)
T 1g60_A 193 HITPKPRDLIERII--RASSNPNDLVLDCFMGSGTTAIV 229 (260)
T ss_dssp --CCCCHHHHHHHH--HHHCCTTCEEEESSCTTCHHHHH
T ss_pred CCCCCCHHHHHHHH--HHhCCCCCEEEECCCCCCHHHHH
Confidence 444 6666654332 34579999999999999876554
No 193
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=49.10 E-value=15 Score=36.26 Aligned_cols=38 Identities=21% Similarity=0.527 Sum_probs=32.0
Q ss_pred hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 684 k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
...++..|+++|. +.+|++|+|+-||...|+..|.++.
T Consensus 28 ~~~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~ 65 (275)
T 3bkx_A 28 QTAHRLAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQV 65 (275)
T ss_dssp HHHHHHHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHh
Confidence 4567778888775 6899999999999999999888765
No 194
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=49.07 E-value=7.3 Score=39.66 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.0
Q ss_pred ceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 696 HWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 696 hwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+-+++||++|+|+-||+.-|+..+.+..
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~~~la~~V 99 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTASHMSDII 99 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHHHHHHHHH
T ss_pred hcCCCCCCEEEEecCcCCHHHHHHHHHh
Confidence 3679999999999999997777766543
No 195
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=49.04 E-value=13 Score=37.24 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=22.5
Q ss_pred hhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 693 DRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 693 ~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+.|..++.+|++|+|+.||+.-++..+..
T Consensus 112 ~~l~~~~~~~~~VLDiGcG~G~l~~~la~ 140 (254)
T 2nxc_A 112 KALARHLRPGDKVLDLGTGSGVLAIAAEK 140 (254)
T ss_dssp HHHHHHCCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEecCCCcHHHHHHHH
Confidence 33444578999999999999988876543
No 196
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=49.03 E-value=24 Score=33.08 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHHHhhhce--eeecCCeEEeeccCCChhhhHHHHH
Q 004169 689 KEIVDRLHW--YVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 689 ~~iv~~lhw--yv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+.+++.|.. ++ +|++|+|+.||+..++..+...
T Consensus 52 ~~~~~~l~~~~~~-~~~~vLDiG~G~G~~~~~l~~~ 86 (207)
T 1jsx_A 52 RHILDSIVVAPYL-QGERFIDVGTGPGLPGIPLSIV 86 (207)
T ss_dssp HHHHHHHHHGGGC-CSSEEEEETCTTTTTHHHHHHH
T ss_pred HHHHhhhhhhhhc-CCCeEEEECCCCCHHHHHHHHH
Confidence 345555431 22 5899999999999988776644
No 197
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=48.65 E-value=9.8 Score=35.98 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=24.8
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
..+++.|.-++.+|++|+|+.||..-++..|.
T Consensus 48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~ 79 (205)
T 3grz_A 48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAH 79 (205)
T ss_dssp HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCHHHHHHH
Confidence 44555555668899999999999988877654
No 198
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=48.45 E-value=14 Score=37.57 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=30.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..++..++++|. +.+|++|+|+.||...++..|.+++
T Consensus 76 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~ 112 (318)
T 2fk8_A 76 YAKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF 112 (318)
T ss_dssp HHHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC
Confidence 456778888886 6899999999999999988777653
No 199
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=48.14 E-value=9.7 Score=38.95 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=26.1
Q ss_pred CcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 276 qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
...|.+|..... .-.+|. +|+..||..|+..+.
T Consensus 180 i~~C~iC~~iv~-------~g~~C~--~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 180 VKICNICHSLLI-------QGQSCE--TCGIRMHLPCVAKYF 212 (238)
T ss_dssp CCBCTTTCSBCS-------SCEECS--SSCCEECHHHHHHHT
T ss_pred CCcCcchhhHHh-------CCcccC--ccChHHHHHHHHHHH
Confidence 567999987653 237894 599999999998875
No 200
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=47.91 E-value=20 Score=37.55 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=46.9
Q ss_pred CchhhhhHHHHhhccccccc---cccccccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 648 PPEILCQIFQWKRKLDVYLA---PFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 648 ~p~~l~q~~~w~~kl~~~la---pfl~g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+|++.-.+...++..-++|- .-||..-|-.+|..-.+..-...++..+.| ++|++|+|.+||+.-|...+-..
T Consensus 149 ~pd~~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~~--~~~~~vLD~gcGsG~~~ie~a~~ 224 (354)
T 3tma_A 149 RPAVRVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADA--RPGMRVLDPFTGSGTIALEAAST 224 (354)
T ss_dssp SCSEEEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTTC--CTTCCEEESSCTTSHHHHHHHHH
T ss_pred CCCEEEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhCC--CCCCEEEeCCCCcCHHHHHHHHh
Confidence 57776666666666665553 123433343344444444444667788887 78999999999999887655443
No 201
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=47.82 E-value=14 Score=40.45 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=28.9
Q ss_pred cCcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 275 QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 275 ~qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
++..|.+|-..-..+ .......|....||+.||..|+.+|+
T Consensus 307 ~~~ECaICys~~l~~--g~lPdk~C~n~~C~h~FH~~CL~kWL 347 (381)
T 3k1l_B 307 EELRCNICFAYRLDG--GEVPLVSCDNAKCVLKCHAVCLEEWF 347 (381)
T ss_dssp SCCSCSSSCCSSCTT--CCCCCBCCSCTTCCCCBCSGGGHHHH
T ss_pred CCccCcccceeecCC--CCCccccccCCccCCccchHHHHHHH
Confidence 345688886543321 12244679888999999999999886
No 202
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=47.53 E-value=12 Score=35.58 Aligned_cols=36 Identities=19% Similarity=0.542 Sum_probs=28.8
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+..+.+++.|--++.+|.+|+|+.||...++..+.+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~ 58 (227)
T 1ve3_A 23 SRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLED 58 (227)
T ss_dssp HHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHH
Confidence 556677777777778899999999999988876643
No 203
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=47.13 E-value=8.1 Score=27.90 Aligned_cols=22 Identities=32% Similarity=1.010 Sum_probs=17.7
Q ss_pred CCcccCccccc----cCccccccccc
Q 004169 264 VPNFLCQNCVY----QEHQCFACGML 285 (770)
Q Consensus 264 ~~~W~C~eC~~----~qhqCfvCgkl 285 (770)
.++|+|+.|.+ ....||.|+..
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCCcCcCcCCcChhcceecCCCCc
Confidence 47899999975 35789999864
No 204
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=46.76 E-value=9.5 Score=40.31 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=35.2
Q ss_pred ccc-hhhHHHHHHhhhceeeecCCeEEeeccCCC-----------------------hhhhHHHHHHHHhCCccCCCccc
Q 004169 681 HFT-KVEKLKEIVDRLHWYVRSGDTIVDFCCGAN-----------------------DFSCMMKVKLEQMGKSCSFRNYD 736 (770)
Q Consensus 681 hft-k~ekl~~iv~~lhwyv~~gd~ivdfccg~n-----------------------~f~~~~~~~l~~~~~~~~~~~~~ 736 (770)
|.| |+..|.+-. +..|-.+||+|+|+.||+. ++-.+.+++|.+.|..=.-.+|.
T Consensus 223 ~~~~kp~~l~~~~--i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~~~~~~~~~~ 300 (319)
T 1eg2_A 223 HPTQKPAAVIERL--VRALSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDGLIDKARSYE 300 (319)
T ss_dssp CTTCCCHHHHHHH--HHHHSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---------CCEE
T ss_pred CCCCCCHHHHHHH--HHHhCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHccCCcccceee
Confidence 444 777765544 3446899999999999985 56777778887776332222366
Q ss_pred ccCCCC
Q 004169 737 LIQPKV 742 (770)
Q Consensus 737 ~~~~~~ 742 (770)
++.+-.
T Consensus 301 ~~~~~~ 306 (319)
T 1eg2_A 301 IVEGAA 306 (319)
T ss_dssp EEECGG
T ss_pred ecchHH
Confidence 555443
No 205
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=45.97 E-value=15 Score=35.27 Aligned_cols=35 Identities=9% Similarity=0.254 Sum_probs=26.6
Q ss_pred HHHHhhhcee-eecCCeEEeeccCCChhhhHHHHHH
Q 004169 689 KEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 689 ~~iv~~lhwy-v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..|...|..+ +.+|++|+|+.||..-|+..+.+.+
T Consensus 60 ~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~ 95 (227)
T 1g8a_A 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIV 95 (227)
T ss_dssp HHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHH
T ss_pred HHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHh
Confidence 4454434433 7899999999999999998887665
No 206
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=44.80 E-value=4.1 Score=36.49 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=16.5
Q ss_pred ceeeccccccccccccCCC
Q 004169 360 QLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 360 qLi~C~RCP~AYH~kCLP~ 378 (770)
+|+.|+.|..|||..|+-.
T Consensus 1 ~mi~c~~c~~w~H~~c~~~ 19 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENL 19 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCC
T ss_pred CccccccCCCccCCccccc
Confidence 4789999999999999743
No 207
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=44.55 E-value=9.6 Score=38.62 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.4
Q ss_pred eecCCeEEeeccCCChhhhHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+++|++|+|+|||..-++..|.+
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~ 103 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQ 103 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHH
T ss_pred CCCcCEEEEeCCCccHHHHHHHH
Confidence 57999999999999888866654
No 208
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=44.49 E-value=19 Score=35.96 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=28.8
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.++..++++|. +.+|++|+|+-||...++..|.++
T Consensus 51 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~ 85 (287)
T 1kpg_A 51 AKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEK 85 (287)
T ss_dssp HHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHH
Confidence 46677888876 689999999999999998877644
No 209
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=43.77 E-value=11 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCCcccccccCCC---CceeecCCcccccccccccc
Q 004169 213 ENYFAVCAICDDG---GDVTFCDGRCLRSFHATITA 245 (770)
Q Consensus 213 d~~d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~ 245 (770)
...+..|.||.+. ++.+..- +|.-.||..|+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~ 45 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVD 45 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHH
T ss_pred CCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHH
Confidence 3445789999653 3333433 599999999853
No 210
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=43.61 E-value=10 Score=39.87 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=19.6
Q ss_pred eecCCeEEeeccCCChhhhHHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+++|++|+|+|||...++..|-+.+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~ 124 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALL 124 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHh
Confidence 3569999999999988877665543
No 211
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=43.32 E-value=11 Score=36.13 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=25.5
Q ss_pred HHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 691 iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+++.|.-++.+|.+|+|+.||...|+..+.+.
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~ 74 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT 74 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc
Confidence 45555556789999999999999988877653
No 212
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=43.15 E-value=7.4 Score=35.87 Aligned_cols=16 Identities=13% Similarity=0.625 Sum_probs=13.6
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|.
T Consensus 69 ~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 69 LNCAHSFCSYCINEWM 84 (138)
T ss_dssp ETTSCEEEHHHHHHHT
T ss_pred CCCCCCccHHHHHHHH
Confidence 3699999999998775
No 213
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=43.07 E-value=22 Score=36.81 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=31.2
Q ss_pred ccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 681 HFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 681 hftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.|+-+.-...|+..| .+.+|++|+|+.||+.-++..|...+
T Consensus 87 ~~~~~~~~~~~l~~l--~~~~g~~VLDiG~G~G~~~~~la~~~ 127 (336)
T 2b25_A 87 AITFPKDINMILSMM--DINPGDTVLEAGSGSGGMSLFLSKAV 127 (336)
T ss_dssp CCCCHHHHHHHHHHH--TCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHh
Confidence 344455566677777 47899999999999999988876654
No 214
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=43.05 E-value=10 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=14.2
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..||..|+
T Consensus 59 ~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 59 TKCSHAFHLLCLLAMY 74 (114)
T ss_dssp SSSCCEECHHHHHHHH
T ss_pred CCCCCcccHHHHHHHH
Confidence 6799999999999875
No 215
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=42.84 E-value=21 Score=33.29 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=24.4
Q ss_pred ccchhhHHHHHHhhhcee-eecCCeEEeeccCCChhhhH
Q 004169 681 HFTKVEKLKEIVDRLHWY-VRSGDTIVDFCCGANDFSCM 718 (770)
Q Consensus 681 hftk~ekl~~iv~~lhwy-v~~gd~ivdfccg~n~f~~~ 718 (770)
+.|.-.-.+.+++.|.-+ ..+|.+|+|++||+.-++..
T Consensus 23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~ 61 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLE 61 (189)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHH
T ss_pred ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHH
Confidence 344444445555655432 35899999999999988873
No 216
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=42.62 E-value=12 Score=40.06 Aligned_cols=34 Identities=24% Similarity=0.569 Sum_probs=31.3
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.-||+||.+| +++++|++|||+=|+-.-||+.+-
T Consensus 80 ~~KL~ei~~~--~~l~~~~~VlDLGaapGGwsq~~~ 113 (321)
T 3lkz_A 80 TAKLRWLVER--RFLEPVGKVIDLGCGRGGWCYYMA 113 (321)
T ss_dssp HHHHHHHHHT--TSCCCCEEEEEETCTTCHHHHHHT
T ss_pred HHHHHHHHHh--cCCCCCCEEEEeCCCCCcHHHHHH
Confidence 6899999999 799999999999999999999654
No 217
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=41.94 E-value=13 Score=37.96 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 684 k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+-.-+.+++++|..+..++.+|+|+.||...++..+.+
T Consensus 17 k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~ 54 (313)
T 3bgv_A 17 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKK 54 (313)
T ss_dssp HHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHh
Confidence 34667788999988888999999999999888776543
No 218
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=41.93 E-value=20 Score=34.81 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+.+..+++++. +.+|++|+|+-||...++..+.+.
T Consensus 22 ~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~ 57 (256)
T 1nkv_A 22 EEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARD 57 (256)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHh
Confidence 467888888886 689999999999999888877654
No 219
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=41.74 E-value=21 Score=32.39 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=19.2
Q ss_pred eecCCeEEeeccCCChhhhHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+.+|++|+|+.||...|+..|.+
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~ 37 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLE 37 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHT
T ss_pred cCCCCeEEEECCCCCHHHHHHHh
Confidence 57899999999999888776644
No 220
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=41.72 E-value=13 Score=35.23 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=48.7
Q ss_pred cccccccCCC---CceeecCCccccccccccccCcccccc-ccCCcccccCCCCcccCcccccc--CcccccccccCCCC
Q 004169 216 FAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQ-SLGYTQAQIDAVPNFLCQNCVYQ--EHQCFACGMLGSSD 289 (770)
Q Consensus 216 d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~-sLGlt~~ev~~~~~W~C~eC~~~--qhqCfvCgklGssd 289 (770)
...|+.|+.+ +.++.-. .+.||..|..=. .|. .|+-. .....+..+|..|-.. ...|..|++.-.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~~L~~~--~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~-- 76 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKAL---DRHWHSKCLKCS--DCHVPLAER--CFSRGESVYCKDDFFKRFGTKCAACQLGIP-- 76 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECS---SCEECTTTSBCT--TTCCBCCSC--CEESSSCEECHHHHHHHHSCBCTTTCCBCC--
T ss_pred CCccccCCCccCCcEEEEEC---CcEEccccCccC--CCCCcCCCC--CcccCCeeeecccccccccccccccccccC--
Confidence 4689999875 2345444 479999886411 131 12221 1223578899999654 368999987543
Q ss_pred CCCCCceeeccCCCcCCcCcchh
Q 004169 290 KSSSQEVFPCVSATCGQFYHPEC 312 (770)
Q Consensus 290 ~ss~~eV~kCsv~~CGrfYH~~C 312 (770)
+.+++. ..-++.||+.|
T Consensus 77 ---~~~~v~---~a~~~~~H~~C 93 (169)
T 2rgt_A 77 ---PTQVVR---RAQDFVYHLHC 93 (169)
T ss_dssp ---TTSEEE---EETTEEEEGGG
T ss_pred ---CCcEEE---EcCCceEeeCC
Confidence 123221 23578889888
No 221
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=40.92 E-value=14 Score=36.22 Aligned_cols=37 Identities=11% Similarity=0.292 Sum_probs=27.7
Q ss_pred cchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 682 FTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 682 ftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
+++-+.+..++++|. ..+|++|+|+.||...++..|.
T Consensus 20 ~~~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~ 56 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAA--LKGNEEVLDVATGGGHVANAFA 56 (260)
T ss_dssp ---CCCHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHG
T ss_pred ccCHHHHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHH
Confidence 445667788888886 4599999999999988877664
No 222
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=40.80 E-value=20 Score=34.81 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=28.7
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+.+.+...++--++.+|.+|+|+-||...|+..|.+.
T Consensus 25 ~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~ 62 (240)
T 3dli_A 25 RELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE 62 (240)
T ss_dssp HHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC
Confidence 34455555555556789999999999999999888664
No 223
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=40.76 E-value=9.4 Score=30.91 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=23.3
Q ss_pred CcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 276 EHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 276 qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
...|.+|...+. +.-+..|.-...-+++|..|+..|+
T Consensus 6 ~~~CrIC~~~~~-----~~l~~PC~C~gs~~~~H~~Cl~~W~ 42 (60)
T 1vyx_A 6 VPVCWICNEELG-----NERFRACGCTGELENVHRSCLSTWL 42 (60)
T ss_dssp CCEETTTTEECS-----CCCCCSCCCSSGGGSCCHHHHHHHH
T ss_pred CCEeEEeecCCC-----CceecCcCCCCchhhhHHHHHHHHH
Confidence 346788865321 1235666434444699999999885
No 224
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=40.65 E-value=23 Score=34.36 Aligned_cols=26 Identities=4% Similarity=0.119 Sum_probs=22.6
Q ss_pred eeecCCeEEeeccCCChhhhHHHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+.+|++|+|+.||+.-|+..|.+++
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~ 99 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIV 99 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHh
Confidence 47899999999999999998887664
No 225
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=40.57 E-value=9.2 Score=36.01 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 688 l~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+..+++.|.- +.+|.+|+|+.||...++..|.+.
T Consensus 34 ~~~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~ 67 (218)
T 3ou2_A 34 APAALERLRA-GNIRGDVLELASGTGYWTRHLSGL 67 (218)
T ss_dssp HHHHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhc
Confidence 4444444432 568889999999999999887654
No 226
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=40.54 E-value=26 Score=37.47 Aligned_cols=47 Identities=13% Similarity=0.246 Sum_probs=31.4
Q ss_pred ccccccc-cc------CcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 670 LHGMRYT-SF------GRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 670 l~g~ryt-sf------grhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+|.+|. +. |-.+++-+. .+.+.++ .+|++|+|+|||..-|+..+..
T Consensus 187 ~~g~~f~v~~~~~~~tgff~~~~~~-~~~l~~~----~~~~~VLDl~cG~G~~sl~la~ 240 (396)
T 3c0k_A 187 EHGMKLLVDIQHGHKTGYYLDQRDS-RLATRRY----VENKRVLNCFSYTGGFAVSALM 240 (396)
T ss_dssp ETTEEEEECTTTSSTTSSCGGGHHH-HHHHHHH----CTTCEEEEESCTTCSHHHHHHH
T ss_pred ECCEEEEEeccccccCCcCcCHHHH-HHHHHHh----hCCCeEEEeeccCCHHHHHHHH
Confidence 4677773 33 344445444 3444443 6899999999999999887754
No 227
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.52 E-value=24 Score=30.25 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=51.7
Q ss_pred CCcccccccCCC----CceeecCCccccccccccccCccccccccCCcccc-cCCCCcccCccccccC--cccccccccC
Q 004169 214 NYFAVCAICDDG----GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQ-IDAVPNFLCQNCVYQE--HQCFACGMLG 286 (770)
Q Consensus 214 ~~d~VC~IC~~g----GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~e-v~~~~~W~C~eC~~~q--hqCfvCgklG 286 (770)
.+...|+.|+.+ +..+.-. .+.||..|..=. .|.. .|.... ....+..+|..|-... ..|..|++.-
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~---~~~~H~~CF~C~--~C~~-~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I 76 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYK---NRFWHDTCFRCA--KCLH-PLANETFVAKDNKILCNKCTTREDSPKCKGCFKAI 76 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEET---TEEEETTTCCCS--SSCC-CTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBC
T ss_pred CCCCcCcccCCcccCCceEEEEC---ccChhhcCCccc--ccCC-CCCcCeeECcCCEEEChhHhhhhcCCccccCCCcc
Confidence 456789999874 4456555 478999985411 1211 122111 1135778999997653 5899998765
Q ss_pred CCCCCCCCceeeccCCCcCCcCcchhh
Q 004169 287 SSDKSSSQEVFPCVSATCGQFYHPECV 313 (770)
Q Consensus 287 ssd~ss~~eV~kCsv~~CGrfYH~~CL 313 (770)
.+ +..++. .=|+.||+.|.
T Consensus 77 ~~----~~~~~~----a~~~~~H~~CF 95 (101)
T 2cup_A 77 VA----GDQNVE----YKGTVWHKDCF 95 (101)
T ss_dssp CS----SSCEEE----SSSCEEETTTC
T ss_pred cc----CCeEEE----eCCcchHHhCC
Confidence 32 123332 34788998883
No 228
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=40.05 E-value=19 Score=39.52 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=25.0
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.|+|.+.+-. +.+|++|+|++||..-|+..|.+
T Consensus 278 ~e~l~~~~~~----~~~~~~VLDlgcG~G~~sl~la~ 310 (425)
T 2jjq_A 278 AVNLVRKVSE----LVEGEKILDMYSGVGTFGIYLAK 310 (425)
T ss_dssp HHHHHHHHHH----HCCSSEEEEETCTTTHHHHHHHH
T ss_pred HHHHHHHhhc----cCCCCEEEEeeccchHHHHHHHH
Confidence 3555444443 68999999999999999987654
No 229
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=40.00 E-value=27 Score=33.95 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHHHhhhcee-eecCCeEEeeccCCChhhhHHHHHH
Q 004169 688 LKEIVDRLHWY-VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 688 l~~iv~~lhwy-v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+..|..-|.+. +.+|++|+|+.||..-++..|.+..
T Consensus 60 ~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~ 96 (230)
T 1fbn_A 60 AAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIA 96 (230)
T ss_dssp HHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHT
T ss_pred HHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHc
Confidence 35563333333 6899999999999999888776654
No 230
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=39.98 E-value=13 Score=38.67 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=19.6
Q ss_pred eecCCeEEeeccCCChhhhHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+++|++|+|+|||..-++..|-+.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~ 139 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQL 139 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHH
Confidence 578999999999998877766543
No 231
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=39.95 E-value=30 Score=33.53 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=34.6
Q ss_pred ccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 673 MRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 673 ~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..|..+.+... .-..+++++|. ..+|.+|+|+.||...++..+.+.+
T Consensus 9 ~~y~~~~~~~~--~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 55 (259)
T 2p35_A 9 QQYLKFEDERT--RPARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRY 55 (259)
T ss_dssp GGGBCCCCGGG--HHHHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhC
Confidence 45666666443 34557777775 5789999999999999998887664
No 232
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=39.54 E-value=13 Score=42.48 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.1
Q ss_pred CccceeeccccccccccccCCC
Q 004169 357 EDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 357 ~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
.+..++.|+.|..+||..|+.-
T Consensus 54 ~~~~mI~CD~C~~WfH~~CVgi 75 (528)
T 3pur_A 54 NDFQWIGCDSCQTWYHFLCSGL 75 (528)
T ss_dssp STTSEEECTTTCCEEEGGGTTC
T ss_pred cCCCEEECCCCCcCCCCcCCCC
Confidence 4568999999999999999864
No 233
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=39.19 E-value=19 Score=36.11 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=22.3
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+++.+. .++.+|+|+|||+..++..+...
T Consensus 101 ~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~ 130 (276)
T 2b3t_A 101 QALARLP---EQPCRILDLGTGTGAIALALASE 130 (276)
T ss_dssp HHHHHSC---SSCCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHhcc---cCCCEEEEecCCccHHHHHHHHh
Confidence 3444443 68899999999999888776543
No 234
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=39.15 E-value=9.9 Score=37.57 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=23.6
Q ss_pred hhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 694 RLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 694 ~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+.++.++|++|+|+.||...|+..|..
T Consensus 17 ~~~~~~~~~~~vLDiGCG~G~~~~~la~ 44 (225)
T 3p2e_A 17 LTEIIGQFDRVHIDLGTGDGRNIYKLAI 44 (225)
T ss_dssp HHHHHTTCSEEEEEETCTTSHHHHHHHH
T ss_pred HHHHhCCCCCEEEEEeccCcHHHHHHHH
Confidence 3456778999999999999999988763
No 235
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=39.00 E-value=16 Score=42.06 Aligned_cols=97 Identities=22% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCcccccccCCC--C---ceeecCCccccccccccccCccccccccCCcccccC--CCCcccCccccccCcccccccccC
Q 004169 214 NYFAVCAICDDG--G---DVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQID--AVPNFLCQNCVYQEHQCFACGMLG 286 (770)
Q Consensus 214 ~~d~VC~IC~~g--G---eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~--~~~~W~C~eC~~~qhqCfvCgklG 286 (770)
....+|.+|.+. | .-+.|. .|.-..|..|...-...|........... ..-.|.=.+- .....|-.|+++-
T Consensus 46 ~~p~~C~~C~~~i~g~~~qg~~C~-~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~-~~~~~C~~C~~~l 123 (674)
T 3pfq_A 46 KQPTFCSHCTDFIWGFGKQGFQCQ-VCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTY-SSPTFCDHCGSLL 123 (674)
T ss_dssp ---------------------------------------------------------CCCCCEECC-SSCCCCSSSCSCC
T ss_pred CCCCccccccccccccCCceeECC-CCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCC-CCCCCCCcccccc
Confidence 346889999874 3 467898 69999999998766666743222111000 0112221110 1123677887652
Q ss_pred CCCCCCCCceeeccCCCcCCcCcchhhcccC
Q 004169 287 SSDKSSSQEVFPCVSATCGQFYHPECVSKLL 317 (770)
Q Consensus 287 ssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~ 317 (770)
.. ....-++| ..|+...|..|....+
T Consensus 124 ~g---~~~qg~~C--~~C~~~~H~~C~~~v~ 149 (674)
T 3pfq_A 124 YG---LIHQGMKC--DTCMMNVHKRCVMNVP 149 (674)
T ss_dssp BB---SSSCEECC--SSSCCCBCSSTTSSSC
T ss_pred ch---hhcCcccc--ccCCcchhhhhhhccC
Confidence 10 11356899 7999999999987554
No 236
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=38.79 E-value=12 Score=37.05 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.9
Q ss_pred CccceeeccccccccccccCCC
Q 004169 357 EDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 357 ~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
-...+++|.+|-.+||..|+-.
T Consensus 16 ~~~~mLqC~~C~qWFH~~Cl~~ 37 (177)
T 3rsn_A 16 LGEVELQCGICTKWFTADTFGI 37 (177)
T ss_dssp TTSCEEECTTTCCEEEGGGGTC
T ss_pred CCceeEeeccccceecHHHhcc
Confidence 3458999999999999999853
No 237
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=38.64 E-value=9.7 Score=34.90 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.4
Q ss_pred eeecCCeEEeeccCCChhhhHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
++.+|.+|+|+.||...++..+.+
T Consensus 43 ~~~~~~~vLdiG~G~G~~~~~l~~ 66 (195)
T 3cgg_A 43 MAPRGAKILDAGCGQGRIGGYLSK 66 (195)
T ss_dssp HSCTTCEEEEETCTTTHHHHHHHH
T ss_pred hccCCCeEEEECCCCCHHHHHHHH
Confidence 378999999999999988877654
No 238
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=38.60 E-value=17 Score=38.07 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=38.6
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHHHhCCccCCCcccccCCC
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQMGKSCSFRNYDLIQPK 741 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 741 (770)
.-||+||.+|. ++++|++|||+=|+-.-||+..-..- |-. .-.-||+=++.
T Consensus 64 ~~KL~ei~ek~--~l~~g~~VvDLGaapGGWSq~~a~~~---g~~-~V~avdvG~~g 114 (267)
T 3p8z_A 64 SAKLQWFVERN--MVIPEGRVIDLGCGRGGWSYYCAGLK---KVT-EVRGYTKGGPG 114 (267)
T ss_dssp HHHHHHHHHTT--SSCCCEEEEEESCTTSHHHHHHHTST---TEE-EEEEECCCSTT
T ss_pred HHHHHHHHHhc--CCCCCCEEEEcCCCCCcHHHHHHHhc---CCC-EEEEEecCCCC
Confidence 67999999998 99999999999999999999654332 222 34456655443
No 239
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=38.53 E-value=26 Score=32.05 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.5
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
|..+-+..+++.|.-+ .+|++|+|++||..-|+..+
T Consensus 27 ~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~ 62 (187)
T 2fhp_A 27 TTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEA 62 (187)
T ss_dssp CCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHH
Confidence 3334444555655322 57899999999999988744
No 240
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=38.22 E-value=22 Score=33.78 Aligned_cols=35 Identities=14% Similarity=0.438 Sum_probs=26.0
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+.+..|++.|.. .+|.+|+|+.||...|+..|.+.
T Consensus 16 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~ 50 (217)
T 3jwh_A 16 QRMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKD 50 (217)
T ss_dssp HHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHHC
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHhh
Confidence 444555565543 47899999999999999887653
No 241
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=38.04 E-value=30 Score=33.62 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
-+..|++.+. +.+|++|||+.||...|+..|...+
T Consensus 84 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 118 (258)
T 2pwy_A 84 DASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAV 118 (258)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHh
Confidence 3456777775 6899999999999998887776653
No 242
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=37.92 E-value=34 Score=33.36 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
++-+..|++.+. +.+|++|+|+.||+.-++..+.+.
T Consensus 79 ~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~ 114 (255)
T 3mb5_A 79 PKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANI 114 (255)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHH
Confidence 455567777776 579999999999998887766555
No 243
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=37.54 E-value=15 Score=44.31 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=36.9
Q ss_pred ccccCcccchhhHHHHHHhhhceee----ecCCeEEeeccCCChhhhHHHHHH
Q 004169 675 YTSFGRHFTKVEKLKEIVDRLHWYV----RSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 675 ytsfgrhftk~ekl~~iv~~lhwyv----~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
....|-+||+.+=-.-+|+-.++.+ .+|++|+|.|||+.-|...+.+++
T Consensus 291 Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l 343 (878)
T 3s1s_A 291 RGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGF 343 (878)
T ss_dssp CCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTS
T ss_pred CCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHh
Confidence 4567999999876666666534433 469999999999999987776654
No 244
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=37.39 E-value=8.6 Score=32.92 Aligned_cols=44 Identities=36% Similarity=0.573 Sum_probs=0.0
Q ss_pred cCcccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCCCCchhHHHHHHHHHhcCCceecCC
Q 004169 275 QEHQCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLHPDNESLAEELRERIAAGESFTCPV 342 (770)
Q Consensus 275 ~qhqCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g~~F~CPl 342 (770)
....|.+|...-. .+....- ..||+.||..|+..|+ .....||.
T Consensus 39 ~~~~C~IC~~~~~-----~~~~~~~--l~C~H~Fh~~Ci~~wl-----------------~~~~~CP~ 82 (91)
T 2l0b_A 39 QEMCCPICCSEYV-----KGDVATE--LPCHHYFHKPCVSIWL-----------------QKSGTCPV 82 (91)
T ss_dssp SCSEETTTTEECC-----TTCEEEE--ETTTEEEEHHHHHHHH-----------------TTTCBCTT
T ss_pred CCCCCcccChhhc-----CCCcEEe--cCCCChHHHHHHHHHH-----------------HcCCcCcC
No 245
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=37.29 E-value=7.5 Score=43.46 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=23.1
Q ss_pred cCcCCccCccCccceeeccccccccccccCCC
Q 004169 347 VCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 347 ~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
.|++..+ ..+.|+.|+.|..+||..|+.-
T Consensus 9 iC~~~~d---~~~~MIqCD~C~~WfH~~CVgi 37 (447)
T 3kv4_A 9 LCRLPYD---VTRFMIECDMCQDWFHGSCVGV 37 (447)
T ss_dssp TTTEECC---TTSCEEECTTTCCEEEHHHHTC
T ss_pred eCCCcCC---CCCCeEEcCCCCcccccccCCc
Confidence 7777553 2458999999999999999854
No 246
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=37.27 E-value=13 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.8
Q ss_pred eeeecCCeEEeeccCCChhhhHHHH
Q 004169 697 WYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 697 wyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
-||.+|++|+|.+||+.-++..+..
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~ 41 (244)
T 3gnl_A 17 SYITKNERIADIGSDHAYLPCFAVK 41 (244)
T ss_dssp TTCCSSEEEEEETCSTTHHHHHHHH
T ss_pred HhCCCCCEEEEECCccHHHHHHHHH
Confidence 4899999999999999999887654
No 247
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=36.97 E-value=13 Score=37.74 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.6
Q ss_pred eeeecCCeEEeeccCCChhhhHHHH
Q 004169 697 WYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 697 wyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
-||.+|++|+|.|||+.-++..+..
T Consensus 17 ~~v~~g~~VlDIGtGsG~l~i~la~ 41 (230)
T 3lec_A 17 NYVPKGARLLDVGSDHAYLPIFLLQ 41 (230)
T ss_dssp TTSCTTEEEEEETCSTTHHHHHHHH
T ss_pred HhCCCCCEEEEECCchHHHHHHHHH
Confidence 4889999999999999988877643
No 248
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=36.92 E-value=24 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=24.2
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+++.|.=+..+|.+|+|+.||...++..+.+.
T Consensus 29 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~ 61 (239)
T 3bxo_A 29 DIADLVRSRTPEASSLLDVACGTGTHLEHFTKE 61 (239)
T ss_dssp HHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEecccCCHHHHHHHHh
Confidence 334444334478999999999999888877654
No 249
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=36.49 E-value=8.1 Score=40.84 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=41.5
Q ss_pred cccccccCcccchhhHHHHHHhhhceeeecCCeEE-eeccCCChhh----hHHHHHHHHh
Q 004169 672 GMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIV-DFCCGANDFS----CMMKVKLEQM 726 (770)
Q Consensus 672 g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~iv-dfccg~n~f~----~~~~~~l~~~ 726 (770)
||+|++||+-|+++..+.++.+.+-=+..+ .-+| ||--|..++. ..|.+.+.+.
T Consensus 1 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~p~~~~~~~~~~~~~~~~~ 59 (444)
T 3if2_A 1 GMKFSKFGQKFTQPTGISQLMDDLGDALKS-DQPVNMLGGGNPAKIDAVNELFLETYKAL 59 (444)
T ss_dssp CCCCCHHHHHHHSCCHHHHHHHHHHHHHHS-SSCCEECSCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhccCchhHHHHHHHHHhhhcC-chhhhccCCCCCCcccchHHHHHHHHHHH
Confidence 899999999999988888887776444444 4466 9999999985 4566666654
No 250
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=36.23 E-value=19 Score=36.29 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=35.8
Q ss_pred ccccccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 669 FLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 669 fl~g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
-.....|..|..++ ++.|.+++..+|- .+|.+|+|+-||...++..|.+.+
T Consensus 8 ~~~~~~y~~~rp~y--~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~ 58 (299)
T 3g5t_A 8 DFNSERYSSSRPSY--PSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQEL 58 (299)
T ss_dssp TCCHHHHHHHSCCC--CHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHS
T ss_pred ccChHHHhhcCCCC--CHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhC
Confidence 33445566665555 4556666666543 689999999999999988887544
No 251
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=36.17 E-value=22 Score=34.40 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+...+|.-++.+|.+|+|+.||...++..|.+.
T Consensus 45 ~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~ 77 (245)
T 3ggd_A 45 VDLPRFELLFNPELPLIDFACGNGTQTKFLSQF 77 (245)
T ss_dssp HHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHh
Confidence 344455445789999999999999888877654
No 252
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=36.03 E-value=33 Score=34.01 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=29.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+.-+..|+..+. +.+|++|+|+.||+..|+..+...+
T Consensus 85 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~ 121 (280)
T 1i9g_A 85 PKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAV 121 (280)
T ss_dssp HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHh
Confidence 445567788775 6899999999999998887776553
No 253
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=35.85 E-value=19 Score=34.25 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=21.9
Q ss_pred eecCCeEEeeccCCChhhhHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.++|++|+|+.||...++..|.+.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~ 48 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQ 48 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHH
T ss_pred ccCCCEEEEecCCCCHHHHHHHHH
Confidence 579999999999999999988776
No 254
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=35.67 E-value=28 Score=34.82 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=30.0
Q ss_pred hhHHHHHHhhhce--eeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHW--YVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhw--yv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
...+..++++|-| -+.+|.+|+|+-||...++..|.++
T Consensus 64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 103 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRK 103 (297)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHH
Confidence 3456778888855 3679999999999999888877665
No 255
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.42 E-value=27 Score=28.39 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=13.0
Q ss_pred CcCCcCcchhhcccC
Q 004169 303 TCGQFYHPECVSKLL 317 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~ 317 (770)
.||+.||..|+..+.
T Consensus 36 ~CgH~fC~~Ci~~~~ 50 (85)
T 2ecv_A 36 DCGHSFCQACLTANH 50 (85)
T ss_dssp SSSCCBCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998764
No 256
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=35.37 E-value=36 Score=37.71 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=30.9
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
|-+.-+..++++|. +++|++|+|+.||+.-++..|...
T Consensus 226 t~p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~ 263 (433)
T 1u2z_A 226 LLPNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALE 263 (433)
T ss_dssp BCHHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHH
T ss_pred ccHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHH
Confidence 33777788888885 689999999999999988776654
No 257
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=35.36 E-value=14 Score=35.91 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.8
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
..++.+|.-. .+|++|+|++||+.-|+..|..
T Consensus 67 ~~l~~~~~~~-~~~~~vLD~gcG~G~~~~~la~ 98 (241)
T 3gdh_A 67 EHIAGRVSQS-FKCDVVVDAFCGVGGNTIQFAL 98 (241)
T ss_dssp HHHHHHHHHH-SCCSEEEETTCTTSHHHHHHHH
T ss_pred HHHHHHhhhc-cCCCEEEECccccCHHHHHHHH
Confidence 4444444322 2799999999999888776643
No 258
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=35.36 E-value=20 Score=34.44 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=50.0
Q ss_pred CCCcccccccCCC---CceeecCCccccccccccccCccccccccCCcccccCCCCcccCccccccC--cccccccccCC
Q 004169 213 ENYFAVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQSLGYTQAQIDAVPNFLCQNCVYQE--HQCFACGMLGS 287 (770)
Q Consensus 213 d~~d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~~ev~~~~~W~C~eC~~~q--hqCfvCgklGs 287 (770)
......|+.|+.+ +..+.-. .+.||+.|..=. .|.. .|........+..+|..|-... ..|..|++.-.
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~-~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKAL---DRHWHSKCLKCS--DCHV-PLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIP 130 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEET---TEEECSSTTSCT--TTCC-CCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCC
T ss_pred CCCCCcCccCCCCccCceeEEec---CCeEccccCccC--CCCC-ccCCCceeECCEeeecCccccccccccccCCCccC
Confidence 3446899999985 2345555 478999885411 1311 1211112235788999996543 57999987543
Q ss_pred CCCCCCCceeeccCCCcCCcCcchh
Q 004169 288 SDKSSSQEVFPCVSATCGQFYHPEC 312 (770)
Q Consensus 288 sd~ss~~eV~kCsv~~CGrfYH~~C 312 (770)
. ...++ ..-++.||+.|
T Consensus 131 ~----~~~v~----~a~~~~~H~~C 147 (182)
T 2jtn_A 131 P----TQVVR----RAQDFVYHLHC 147 (182)
T ss_dssp S----SCCCC----EETTEECCTTT
T ss_pred C----CceEE----ecCCCCEEeCC
Confidence 1 11122 23467888888
No 259
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=35.35 E-value=22 Score=33.53 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.5
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+.+.+++..| .+|.+|+|+.||...|+..+.+.
T Consensus 31 ~~~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~ 64 (211)
T 3e23_A 31 SATLTKFLGEL----PAGAKILELGCGAGYQAEAMLAA 64 (211)
T ss_dssp CHHHHHHHTTS----CTTCEEEESSCTTSHHHHHHHHT
T ss_pred hHHHHHHHHhc----CCCCcEEEECCCCCHHHHHHHHc
Confidence 55666666654 58999999999999988877653
No 260
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=34.91 E-value=18 Score=34.68 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=20.7
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCM 718 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~ 718 (770)
+.+++.|--+ .+|++|+|++||+.-|+..
T Consensus 42 ~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~ 70 (201)
T 2ift_A 42 ETLFNWLMPY-IHQSECLDGFAGSGSLGFE 70 (201)
T ss_dssp HHHHHHHHHH-HTTCEEEETTCTTCHHHHH
T ss_pred HHHHHHHHHh-cCCCeEEEcCCccCHHHHH
Confidence 3444444332 2789999999999998874
No 261
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=34.86 E-value=16 Score=40.66 Aligned_cols=25 Identities=16% Similarity=0.557 Sum_probs=19.8
Q ss_pred eecCCeEEeeccCCChhhhHHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+++|++|+|+|||...++..|-+.+
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~ 127 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQM 127 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHc
Confidence 5679999999999888776665543
No 262
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=34.64 E-value=17 Score=27.41 Aligned_cols=16 Identities=31% Similarity=0.912 Sum_probs=13.8
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|+
T Consensus 25 ~~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 25 LPCGHLLHRTCYEEML 40 (55)
T ss_dssp CTTSCEEETTHHHHHH
T ss_pred cCCCCcccHHHHHHHH
Confidence 5699999999998764
No 263
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=34.52 E-value=17 Score=35.65 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=21.3
Q ss_pred eeeecCCeEEeeccCCChhhhHHHHH
Q 004169 697 WYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 697 wyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
||-.++++|||++||+..|+..|...
T Consensus 30 ~f~~~~~~vLDiGcG~G~~~~~lA~~ 55 (218)
T 3dxy_A 30 LFGREAPVTLEIGFGMGASLVAMAKD 55 (218)
T ss_dssp HHSSCCCEEEEESCTTCHHHHHHHHH
T ss_pred HcCCCCCeEEEEeeeChHHHHHHHHH
Confidence 45558999999999999998877654
No 264
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.43 E-value=22 Score=30.42 Aligned_cols=34 Identities=24% Similarity=0.599 Sum_probs=22.9
Q ss_pred CCcCCcCcchhhcccCCCCchhHHHHHHHHHhcC--CceecCCcccc
Q 004169 302 ATCGQFYHPECVSKLLHPDNESLAEELRERIAAG--ESFTCPVHKCF 346 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~~p~~~~~~~el~krV~~g--~~F~CPlH~C~ 346 (770)
..||+.|-..|+..+. +..+..+ ..+.||..-|.
T Consensus 24 ~~CgH~FC~~Cl~~~~-----------~~~i~~g~~~~i~CP~~~C~ 59 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYV-----------ELLIKEGLETAISCPDAACP 59 (94)
T ss_dssp TTTTEEEEHHHHHHHH-----------HHHHHHCSCCCEECSCTTCS
T ss_pred CCCCCcccHHHHHHHH-----------HHHhhcCCcccccCccccCC
Confidence 4699999999998764 2233344 35788875443
No 265
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=34.26 E-value=25 Score=25.46 Aligned_cols=23 Identities=17% Similarity=0.609 Sum_probs=17.7
Q ss_pred CCcccCcccccc----CcccccccccC
Q 004169 264 VPNFLCQNCVYQ----EHQCFACGMLG 286 (770)
Q Consensus 264 ~~~W~C~eC~~~----qhqCfvCgklG 286 (770)
.++|+|+.|.+- ...|+.|+.+-
T Consensus 4 ~gDW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SSSCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CCCcccCCCCCccccccccccccCCcC
Confidence 578999999753 46899998653
No 266
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=33.77 E-value=37 Score=32.01 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..+++.+. +.+|.+|+|+.||...++..+.+..
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~ 59 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMV 59 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHH
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHh
Confidence 34555553 5789999999999999988887765
No 267
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=33.73 E-value=16 Score=36.92 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.1
Q ss_pred eeecCCeEEeeccCCChhhhHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
||.+|++|+|.+||+.-++..+..
T Consensus 12 ~v~~g~~VlDIGtGsG~l~i~la~ 35 (225)
T 3kr9_A 12 FVSQGAILLDVGSDHAYLPIELVE 35 (225)
T ss_dssp TSCTTEEEEEETCSTTHHHHHHHH
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHH
Confidence 789999999999999998877643
No 268
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=33.48 E-value=29 Score=35.20 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=28.0
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
+...-+..|++.+. +.+||+|+|+-||...++. +.
T Consensus 5 ~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~ 39 (252)
T 1qyr_A 5 NDQFVIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV 39 (252)
T ss_dssp CCHHHHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH
T ss_pred CCHHHHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh
Confidence 44555677888885 5799999999999999988 53
No 269
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=33.40 E-value=10 Score=34.87 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=0.5
Q ss_pred cccccccCCCCc--eeec---------------CCcccccccccccc
Q 004169 216 FAVCAICDDGGD--VTFC---------------DGRCLRSFHATITA 245 (770)
Q Consensus 216 d~VC~IC~~gGe--LL~C---------------dG~C~RsFH~~Cl~ 245 (770)
++.|+||.+.-+ -+.| -++|.-.||..|+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~ 94 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCIS 94 (117)
T ss_dssp C----------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHH
Confidence 468999976421 1122 24799999999854
No 270
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=33.35 E-value=28 Score=34.16 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=19.4
Q ss_pred ecCCeEEeeccCCChhhhHHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
..+.+|+|++||+.-|+..|...
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~ 72 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLL 72 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 36789999999999998877655
No 271
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=33.33 E-value=32 Score=33.19 Aligned_cols=57 Identities=9% Similarity=0.078 Sum_probs=35.1
Q ss_pred CchhhhhHHHHhhccccccccccccccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 648 PPEILCQIFQWKRKLDVYLAPFLHGMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 648 ~p~~l~q~~~w~~kl~~~lapfl~g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.++.+.++..+-....+ ..+.++-..-+...++ ..+|++|||++||..-++..|-+.
T Consensus 19 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~la~~ 75 (233)
T 2gpy_A 19 RDQYIEQMEREAHEQQV----------------PIMDLLGMESLLHLLK--MAAPARILEIGTAIGYSAIRMAQA 75 (233)
T ss_dssp CCHHHHHHHHHHHHTTC----------------CCCCHHHHHHHHHHHH--HHCCSEEEEECCTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHHh--ccCCCEEEEecCCCcHHHHHHHHH
Confidence 35667776666533322 1233443344444444 358999999999998888777655
No 272
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.17 E-value=35 Score=25.88 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=13.8
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 31 ~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 31 IECGHNFCKACITRWW 46 (58)
T ss_dssp CSSCCCCCHHHHHHHT
T ss_pred CCCCCccCHHHHHHHH
Confidence 3699999999998874
No 273
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=32.93 E-value=23 Score=34.23 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=29.3
Q ss_pred hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 684 k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..+-+.++++.|+ ..+|.+|+|+.||...|+..|.+..
T Consensus 78 ~~~~~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~ 115 (254)
T 1xtp_A 78 DIEGSRNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL 115 (254)
T ss_dssp HHHHHHHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH
T ss_pred HHHHHHHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh
Confidence 3455667777775 4689999999999999988776553
No 274
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=32.64 E-value=26 Score=33.29 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=28.4
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.....+..|++.|.. .++.+|+|+.||...|+..|.+.
T Consensus 13 ~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~ 50 (219)
T 3jwg_A 13 LNQQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKD 50 (219)
T ss_dssp HHHHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTS
T ss_pred chHHHHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhc
Confidence 345556666666654 47899999999999999887653
No 275
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=32.63 E-value=11 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=19.0
Q ss_pred CcccccccCCCC-c--eeec--CCcccccccccccc
Q 004169 215 YFAVCAICDDGG-D--VTFC--DGRCLRSFHATITA 245 (770)
Q Consensus 215 ~d~VC~IC~~gG-e--LL~C--dG~C~RsFH~~Cl~ 245 (770)
....|.||...+ + +..| .| ..+.||..|+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~g-s~~~~H~~Cl~ 39 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTG-ELENVHRSCLS 39 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSS-GGGSCCHHHHH
T ss_pred CCCEeEEeecCCCCceecCcCCCC-chhhhHHHHHH
Confidence 457899996532 2 3343 32 45599999864
No 276
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=32.33 E-value=36 Score=34.67 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=25.1
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.|++.|. -+++|++|+|++||...|+..|.++
T Consensus 107 ~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~ 138 (312)
T 3vc1_A 107 FLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRR 138 (312)
T ss_dssp HHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHH
Confidence 4555554 2579999999999999999887665
No 277
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=32.03 E-value=19 Score=34.07 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=21.1
Q ss_pred ceeeecCCeEEeeccCCChhhhHHHH
Q 004169 696 HWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 696 hwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.=|+.+|++|||+.||...++..|.+
T Consensus 25 ~~~~~~~~~vLdiG~G~G~~~~~l~~ 50 (235)
T 3sm3_A 25 HNYLQEDDEILDIGCGSGKISLELAS 50 (235)
T ss_dssp HHHCCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHhCCCCCeEEEECCCCCHHHHHHHh
Confidence 33577999999999999988877654
No 278
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.84 E-value=15 Score=28.74 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=13.3
Q ss_pred CcCCcCcchhhcccC
Q 004169 303 TCGQFYHPECVSKLL 317 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~ 317 (770)
.||+.||..|+..++
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 37 DCGHNFCLKCITQIG 51 (63)
T ss_dssp TTSSEECHHHHHHHH
T ss_pred CCCCcchHHHHHHHH
Confidence 799999999998764
No 279
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=31.67 E-value=82 Score=33.05 Aligned_cols=95 Identities=16% Similarity=0.210 Sum_probs=64.6
Q ss_pred eeEEEeee-eccCCc-ceEEEEecCCceeEcCCCchhHHHHHH----HHHHHhhhhhhhccCCccchhHHHHHHHhhcc-
Q 004169 65 EQVIAWKF-ELSYAQ-PEIWVLSKQNNWIMLQSPKKSFKNIVR----TILITVHWLYCVKQNPEASRKYIREQMLKVFC- 137 (770)
Q Consensus 65 ~~v~aW~~-~l~~~~-p~i~vls~~~~Wi~L~kPr~~ye~~ir----~vlitv~~LhfvkknPe~s~k~l~~~L~K~fs- 137 (770)
=.|..|-+ +.+++. |-|.| +.+=.|-.|.||...|+...+ .+.+++--+-|+.+||..+=..|...|....+
T Consensus 127 GpI~eW~IsGydgGe~~lI~i-sT~~AdY~L~kPS~~Yk~~~~~f~eK~~~s~~Vie~L~~~p~~syedLL~~v~~s~~p 205 (268)
T 3epz_A 127 GPINEWWITGFDGGEKALIGF-STSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPP 205 (268)
T ss_dssp CCCSEEEEEC---CCBCEEEE-ECSSCEEEECCBCTTTHHHHTTCCHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHCBCC
T ss_pred ccceEEEEecccCCccceEEE-EeccEEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHccCCC
Confidence 35778888 454544 66766 778899999999999988654 45566666789999999997777777766544
Q ss_pred -cceec-CCchhhhhhhhhhHHHHh
Q 004169 138 -SYEVE-PSENDLLDHMPISREAAE 160 (770)
Q Consensus 138 -~f~i~-Ps~~DL~~h~~Lik~~vk 160 (770)
..+.+ -+++-|+.|=..|=.++.
T Consensus 206 ~~~~~~~fsed~li~~gqFI~~Qv~ 230 (268)
T 3epz_A 206 SGLNLNRFTEDSLLRHAQFVVEQVE 230 (268)
T ss_dssp GGGCCCCCCHHHHHTTHHHHHHHHH
T ss_pred ccccccccCHHHHHhhhhhHHHHHh
Confidence 22222 246777777666654444
No 280
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=31.59 E-value=33 Score=37.12 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=28.8
Q ss_pred cCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 678 FGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 678 fgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
-|..+.+-+--.-++..|. +++|++|+|+|||..-++..|-+.
T Consensus 225 ~G~~~~qd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~ 267 (429)
T 1sqg_A 225 DGWVTVQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEV 267 (429)
T ss_dssp GTSEEECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHH
T ss_pred CCCeEeeCHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHH
Confidence 3443444444444555565 489999999999998887766543
No 281
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=31.58 E-value=25 Score=38.15 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.7
Q ss_pred hceeeecCCeEEeeccCCChhhhHHHH
Q 004169 695 LHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 695 lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+-.++++|++|+|+|||..-|+..+-.
T Consensus 208 l~~~~~~g~~VLDlg~GtG~~sl~~a~ 234 (393)
T 4dmg_A 208 FEAMVRPGERVLDVYSYVGGFALRAAR 234 (393)
T ss_dssp HHTTCCTTCEEEEESCTTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEcccchhHHHHHHHH
Confidence 334588999999999999988876643
No 282
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=31.51 E-value=29 Score=33.59 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=27.1
Q ss_pred hhHHHHHHhhh---ceeeecCCeEEeeccCCChhhhHHH
Q 004169 685 VEKLKEIVDRL---HWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 685 ~ekl~~iv~~l---hwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.+-...+++.| .-.+.+|.+|+|+.||...++..+.
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~ 58 (263)
T 2yqz_A 20 PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLI 58 (263)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHH
Confidence 34455666666 5567899999999999988876654
No 283
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=31.47 E-value=39 Score=33.15 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=25.8
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+..++++|. +.+|++|+|+-||...|+..+.+.
T Consensus 49 ~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~ 82 (273)
T 3bus_A 49 LTDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATA 82 (273)
T ss_dssp HHHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHh
Confidence 3455666664 579999999999999988777543
No 284
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=31.36 E-value=27 Score=35.03 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+++.+ .+++|++|+|++||...++..+.+.
T Consensus 101 ~~~~~~--~~~~~~~VLD~G~G~G~~~~~la~~ 131 (275)
T 1yb2_A 101 YIIMRC--GLRPGMDILEVGVGSGNMSSYILYA 131 (275)
T ss_dssp -----C--CCCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHc--CCCCcCEEEEecCCCCHHHHHHHHH
Confidence 344444 3689999999999999998877665
No 285
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.16 E-value=24 Score=28.26 Aligned_cols=15 Identities=20% Similarity=0.775 Sum_probs=13.6
Q ss_pred CcCCcCcchhhcccC
Q 004169 303 TCGQFYHPECVSKLL 317 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~ 317 (770)
.||+.||..|+..+.
T Consensus 37 ~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 37 DCGHNFCLKCITQIG 51 (73)
T ss_dssp TTCCEEEHHHHHHHC
T ss_pred CCCChhhHHHHHHHH
Confidence 799999999998876
No 286
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=31.09 E-value=20 Score=39.22 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=23.4
Q ss_pred CCcccccccCCC----Cc--eeecC-Ccccccccccccc
Q 004169 214 NYFAVCAICDDG----GD--VTFCD-GRCLRSFHATITA 245 (770)
Q Consensus 214 ~~d~VC~IC~~g----Ge--LL~Cd-G~C~RsFH~~Cl~ 245 (770)
....-|+||... |. ...|+ ..|...||..|+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~ 344 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLE 344 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGH
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHH
Confidence 345679999752 43 35686 4799999999974
No 287
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=31.02 E-value=21 Score=39.09 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.0
Q ss_pred eecCCeEEeeccCCChhhhHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+++|++|+|+|||..-++..|-+.
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~ 280 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAEL 280 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHH
T ss_pred CCCcCEEEEeCCCccHHHHHHHHH
Confidence 678999999999998887766554
No 288
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=30.95 E-value=37 Score=34.07 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=28.8
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
-..+-+..+++++ |-+.++.+|+|+.||...++..|.+.
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~ 43 (284)
T 3gu3_A 5 YNDDYVSFLVNTV-WKITKPVHIVDYGCGYGYLGLVLMPL 43 (284)
T ss_dssp CCHHHHHHHHHTT-SCCCSCCEEEEETCTTTHHHHHHTTT
T ss_pred cchHHHHHHHHHH-hccCCCCeEEEecCCCCHHHHHHHHh
Confidence 3445555666665 55789999999999999888877544
No 289
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=30.94 E-value=27 Score=35.77 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.7
Q ss_pred ecCCeEEeeccCCChhhhHHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+|.+|+|+|||+.-++..+...
T Consensus 122 ~~~~~vLDlG~GsG~~~~~la~~ 144 (284)
T 1nv8_A 122 YGIKTVADIGTGSGAIGVSVAKF 144 (284)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHH
T ss_pred cCCCEEEEEeCchhHHHHHHHHC
Confidence 37889999999999888766543
No 290
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=30.58 E-value=25 Score=32.66 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred ecCCeEEeeccCCChhhhHHHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
.+|.+|+|++||+.-++..|.+.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~ 52 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALAC 52 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhC
Confidence 789999999999999998887763
No 291
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=30.54 E-value=14 Score=40.03 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
=|.|+++-|. +++|+++||.+||...-|..+-++|
T Consensus 45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~l 79 (347)
T 3tka_A 45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQL 79 (347)
T ss_dssp TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTC
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhC
Confidence 5789999998 5899999999999999999876554
No 292
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=30.41 E-value=34 Score=31.33 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=18.4
Q ss_pred ecCCeEEeeccCCChhhhHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+|++|+|++||..-|+..+..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~ 51 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVS 51 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHHH
Confidence 5789999999999998876543
No 293
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=30.29 E-value=18 Score=40.33 Aligned_cols=24 Identities=8% Similarity=0.361 Sum_probs=18.5
Q ss_pred eecCCeEEeeccCCChhhhHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+++|++|+|+|||..-++..|-+.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~ 122 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAAR 122 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHh
Confidence 457999999999987777665543
No 294
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=30.12 E-value=26 Score=37.41 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.3
Q ss_pred hceeeecCCeEEeeccCCChhhhHHHH
Q 004169 695 LHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 695 lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+-+++++|++|+|++||..-|+..+-.
T Consensus 211 ~~~~~~~~~~VLDl~~G~G~~~~~la~ 237 (396)
T 2as0_A 211 LEKWVQPGDRVLDVFTYTGGFAIHAAI 237 (396)
T ss_dssp HGGGCCTTCEEEETTCTTTHHHHHHHH
T ss_pred HHHHhhCCCeEEEecCCCCHHHHHHHH
Confidence 335578999999999999999887754
No 295
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=30.02 E-value=47 Score=31.31 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.1
Q ss_pred ecCCeEEeeccCCChhhhHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+|.+|+|+.||...++..|.+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~ 65 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLL 65 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHH
T ss_pred cCCCeEEEeCCCCCHHHHHHHh
Confidence 3899999999999999887754
No 296
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=29.80 E-value=22 Score=39.63 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=21.9
Q ss_pred HhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 692 VDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 692 v~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+.-|.--+++|++|+|+|||..-++..|-+.
T Consensus 108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~ 138 (479)
T 2frx_A 108 VAALFADGNAPQRVMDVAAAPGSKTTQISAR 138 (479)
T ss_dssp HHHHTTTTCCCSEEEESSCTTSHHHHHHHHH
T ss_pred HHHhCcccCCCCEEEEeCCCCCHHHHHHHHh
Confidence 3445544459999999999987777655443
No 297
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=29.73 E-value=30 Score=32.88 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=22.4
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
..+++.|.-+ .+|.+|+|+-||...|+..|.+
T Consensus 31 ~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~ 62 (250)
T 2p7i_A 31 PFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQE 62 (250)
T ss_dssp HHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTT
T ss_pred HHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHH
Confidence 3344444323 3788999999999988887753
No 298
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=29.03 E-value=27 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=22.6
Q ss_pred chhhHHHHHHhhhceeeecCCeEEeeccCCChh
Q 004169 683 TKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDF 715 (770)
Q Consensus 683 tk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f 715 (770)
.|+..|.+..= ..+..+||+|+|+.||+.--
T Consensus 236 ~kp~~l~~~~i--~~~~~~~~~VlDpF~GsGtt 266 (323)
T 1boo_A 236 RFPAKLPEFFI--RMLTEPDDLVVDIFGGSNTT 266 (323)
T ss_dssp CCCTHHHHHHH--HHHCCTTCEEEETTCTTCHH
T ss_pred cCCHHHHHHHH--HHhCCCCCEEEECCCCCCHH
Confidence 35666655443 34689999999999999753
No 299
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=28.91 E-value=33 Score=37.37 Aligned_cols=23 Identities=26% Similarity=0.678 Sum_probs=19.6
Q ss_pred eecCCeEEeeccCCChhhhHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~ 721 (770)
..+|++|+|++||+.-|+..|..
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~ 306 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLAT 306 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHT
T ss_pred CCCCCEEEECCCCCCHHHHHHHh
Confidence 46889999999999999987753
No 300
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=28.82 E-value=50 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=24.6
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.....++.+++ +.+|++|+|+.||+.-++..+.
T Consensus 78 ~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~ 110 (248)
T 2yvl_A 78 KDSFYIALKLN--LNKEKRVLEFGTGSGALLAVLS 110 (248)
T ss_dssp HHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHH
T ss_pred hhHHHHHHhcC--CCCCCEEEEeCCCccHHHHHHH
Confidence 34456666665 5799999999999987776554
No 301
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=28.07 E-value=32 Score=33.75 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
..+++.|.-+..+|.+|||+.||...|+..+.
T Consensus 38 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~ 69 (263)
T 3pfg_A 38 ADLAALVRRHSPKAASLLDVACGTGMHLRHLA 69 (263)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCTTSHHHHHHT
T ss_pred HHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHH
Confidence 44555555567788999999999987776653
No 302
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=28.07 E-value=39 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=27.2
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
.+-+..+++.|- .+.+|.+|+|+.||...++..|.+
T Consensus 31 ~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~ 66 (267)
T 3kkz_A 31 PEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAG 66 (267)
T ss_dssp HHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHh
Confidence 445555666666 678999999999999888776643
No 303
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=27.47 E-value=45 Score=33.94 Aligned_cols=36 Identities=8% Similarity=0.009 Sum_probs=28.1
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+.+|++++.|...++.+|||+.||...++..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~ 186 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQH 186 (335)
T ss_dssp HHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHH
T ss_pred hHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHH
Confidence 456788888775578899999999999888877655
No 304
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=27.46 E-value=28 Score=33.63 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=19.8
Q ss_pred eeecCCeEEeeccCCChhhhHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
++.+|++|+|+.||...++..|.+
T Consensus 45 ~~~~~~~vLDiGcG~G~~~~~l~~ 68 (226)
T 3m33_A 45 LLTPQTRVLEAGCGHGPDAARFGP 68 (226)
T ss_dssp HCCTTCEEEEESCTTSHHHHHHGG
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHH
Confidence 468999999999999888776643
No 305
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=27.29 E-value=60 Score=32.03 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=24.6
Q ss_pred cCCeEEeeccCCChhhhHHHHHHHHhCCcc
Q 004169 701 SGDTIVDFCCGANDFSCMMKVKLEQMGKSC 730 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~~~~~l~~~~~~~ 730 (770)
++++|+|++||+.-++..|.+.++.++..+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~ 110 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDC 110 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCC
Confidence 689999999999999999988866554433
No 306
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=26.97 E-value=23 Score=35.20 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=19.4
Q ss_pred ee-cCCeEEeeccCCChhhhHHHH
Q 004169 699 VR-SGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 699 v~-~gd~ivdfccg~n~f~~~~~~ 721 (770)
+. +|++|+|++||+.-++..|..
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~ 69 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLST 69 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHT
T ss_pred CCCCCCEEEEcCCchhHHHHHHHH
Confidence 45 899999999999998887654
No 307
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=26.62 E-value=36 Score=32.85 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=19.9
Q ss_pred ecCCeEEeeccCCChhhhHHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+|..|||++||+..|+..|...
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~ 59 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQ 59 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCceEEEEecCCCHHHHHHHHH
Confidence 47899999999999999887654
No 308
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=29 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=18.5
Q ss_pred cccccccCCC---C-ceeecCCcc-----cccccccccc
Q 004169 216 FAVCAICDDG---G-DVTFCDGRC-----LRSFHATITA 245 (770)
Q Consensus 216 d~VC~IC~~g---G-eLL~CdG~C-----~RsFH~~Cl~ 245 (770)
+..|.||... + .++ .+| ...||..|+.
T Consensus 15 ~~~C~IC~~~~~~~~~l~---~pC~C~Gs~h~fH~~Cl~ 50 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLI---TPCHCTGSLHFVHQACLQ 50 (80)
T ss_dssp SCCCSSSCCCCCSSSCEE---CSSSCCSSSCCEETTHHH
T ss_pred CCCCeEcCccccCCCeeE---eccccCCcCCeeCHHHHH
Confidence 5789999753 2 343 244 4999999864
No 309
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=26.39 E-value=40 Score=33.18 Aligned_cols=33 Identities=9% Similarity=0.310 Sum_probs=23.7
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+.+.+++.++ +.+|.+|+|+.||...++..+.+
T Consensus 42 ~~~~~~l~~~---~~~~~~vLDiGcG~G~~~~~l~~ 74 (260)
T 2avn_A 42 RLIGSFLEEY---LKNPCRVLDLGGGTGKWSLFLQE 74 (260)
T ss_dssp HHHHHHHHHH---CCSCCEEEEETCTTCHHHHHHHT
T ss_pred HHHHHHHHHh---cCCCCeEEEeCCCcCHHHHHHHH
Confidence 3444555554 34899999999999988876643
No 310
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=26.05 E-value=57 Score=32.52 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=25.5
Q ss_pred HHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 688 l~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
...|+..+. +.+|++|+|++||+.-++..+...
T Consensus 101 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~ 133 (277)
T 1o54_A 101 SSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARA 133 (277)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHH
Confidence 355666664 689999999999999888776554
No 311
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=26.00 E-value=43 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=23.6
Q ss_pred HHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 688 l~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+..+++++. ..+| +|+|+.||..-++..|.++
T Consensus 33 ~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~ 64 (219)
T 3dlc_A 33 AENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ 64 (219)
T ss_dssp HHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc
Confidence 345555554 4566 9999999999988877654
No 312
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=25.97 E-value=16 Score=36.90 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=29.5
Q ss_pred cccchhhHH---HHHHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 680 RHFTKVEKL---KEIVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 680 rhftk~ekl---~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
.|.|.-|.| .++=+..-.|+.+.++|+|+=||.|-++-.+
T Consensus 25 ~H~STReRLp~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l 67 (200)
T 3fzg_A 25 IHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQ 67 (200)
T ss_dssp HSHHHHTTGGGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHH
T ss_pred hCCCHHHHhHhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHH
Confidence 566666655 3333444556899999999999999988776
No 313
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.87 E-value=26 Score=30.34 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=13.5
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 37 ~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 37 TKCDHIFCKFCMLKLL 52 (112)
T ss_dssp CTTSCCCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999998764
No 314
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=25.74 E-value=27 Score=38.61 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.9
Q ss_pred CcccchhhHHHHHHhh--------hceeeec
Q 004169 679 GRHFTKVEKLKEIVDR--------LHWYVRS 701 (770)
Q Consensus 679 grhftk~ekl~~iv~~--------lhwyv~~ 701 (770)
||||-.+|-|++++|. |||++.+
T Consensus 18 aR~f~~~~~ik~~ID~mA~~KlN~lH~HltD 48 (442)
T 2yl5_A 18 GRKYFTLNQLKRIVDKASELGYSDVHLLLGN 48 (442)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHhCCcEEEEEEcC
Confidence 7999999999999994 8999965
No 315
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=25.72 E-value=53 Score=28.15 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=37.5
Q ss_pred ChhHHHHHHHhhhccC--CCCchHhhhccCCCCcccccCCccccceeeecccchhhHHHHHHHHHHhhcCCCcc
Q 004169 570 DAEMEKELLALIKDST--SSFNEEEFMKSHIVPITHAHHSKHLLEKSITLGLVEGSVKAVRAALEMLDGGCDIE 641 (770)
Q Consensus 570 d~~~e~r~l~~~~~~~--s~~~~~~~~~~~~~~~t~~~~~~~~~~k~i~~g~~e~sv~a~~~al~~le~g~~i~ 641 (770)
-.+.+++||.++++.. +.+|..++.+...++. .+|+.+|.+|++-+-|+
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr-----------------------~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPK-----------------------KEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCH-----------------------HHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH-----------------------HHHHHHHHHHHHCCCEE
Confidence 3567899999999776 4899999988876543 35788899997765654
No 316
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.64 E-value=17 Score=35.23 Aligned_cols=85 Identities=22% Similarity=0.378 Sum_probs=49.2
Q ss_pred CCcccccccCCC--C-ceeecCCccccccccccccCccccccccCCcc--cc-cCCCCcccCccccccC--c--cccccc
Q 004169 214 NYFAVCAICDDG--G-DVTFCDGRCLRSFHATITAGKNALCQSLGYTQ--AQ-IDAVPNFLCQNCVYQE--H--QCFACG 283 (770)
Q Consensus 214 ~~d~VC~IC~~g--G-eLL~CdG~C~RsFH~~Cl~g~~s~C~sLGlt~--~e-v~~~~~W~C~eC~~~q--h--qCfvCg 283 (770)
.....|+.|+.+ + ..+.-. .+.||+.|..=. .|.. .|.. .. ....+..+|..|-... . .|..|+
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~-~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~ 76 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAM---DSYWHSRCLKCS--SCQA-QLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACG 76 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEET---TEEECGGGCBCT--TTCC-BHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTC
T ss_pred CCCCcCccCCCEeCCceeEEec---CcEecccCcccC--CCCc-ccccCCceEEEeCCccccccccccccccCCccccCC
Confidence 456789999875 2 245444 478999986411 1311 1111 01 1135788999996532 2 699999
Q ss_pred ccCCCCCCCCCceeeccCCCcCCcCcchh
Q 004169 284 MLGSSDKSSSQEVFPCVSATCGQFYHPEC 312 (770)
Q Consensus 284 klGssd~ss~~eV~kCsv~~CGrfYH~~C 312 (770)
+.-.. ...++. .-++.||+.|
T Consensus 77 ~~I~~----~e~~i~----a~~~~~H~~C 97 (188)
T 1rut_X 77 QSIPA----SELVMR----AQGNVYHLKC 97 (188)
T ss_dssp CEECT----TSEEEE----ETTEEECGGG
T ss_pred Ccccc----CcEEEE----cCCCEEeCCC
Confidence 76431 112332 3478999988
No 317
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=25.61 E-value=67 Score=31.06 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=26.0
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
+-+..+++.|- -+.+|++|+|+.||...++..+.+.
T Consensus 32 ~~~~~~l~~l~-~~~~~~~vLDiG~G~G~~~~~l~~~ 67 (257)
T 3f4k_A 32 EATRKAVSFIN-ELTDDAKIADIGCGTGGQTLFLADY 67 (257)
T ss_dssp HHHHHHHTTSC-CCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCCCeEEEeCCCCCHHHHHHHHh
Confidence 44444555553 3678999999999999888776554
No 318
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=25.55 E-value=47 Score=35.30 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred cCCeEEeeccCCChhhhHHHH
Q 004169 701 SGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~~~~ 721 (770)
+|++|+|++||..-|+..+..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~ 229 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLAL 229 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHH
Confidence 899999999999999987754
No 319
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.47 E-value=31 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.872 Sum_probs=13.6
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 31 ~~CgH~fC~~Ci~~~~ 46 (66)
T 2ecy_A 31 TECGHRFCESCMAALL 46 (66)
T ss_dssp CSSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999998764
No 320
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=25.40 E-value=33 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.4
Q ss_pred eecCCeEEeeccCCChhhhHHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+.+|++|+|++||+.-++..|..+.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~ 58 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARL 58 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHC
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhC
Confidence 5689999999999999998887664
No 321
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=25.38 E-value=51 Score=31.46 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=24.1
Q ss_pred HHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 687 KLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 687 kl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
-|.+++++|. +.+|.+|+|+-||..-++..|.
T Consensus 10 ~l~~~~~~l~--~~~~~~vLD~GCG~G~~~~~la 41 (203)
T 1pjz_A 10 DLQQYWSSLN--VVPGARVLVPLCGKSQDMSWLS 41 (203)
T ss_dssp HHHHHHHHHC--CCTTCEEEETTTCCSHHHHHHH
T ss_pred HHHHHHHhcc--cCCCCEEEEeCCCCcHhHHHHH
Confidence 3666777664 5789999999999887666554
No 322
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=25.36 E-value=41 Score=32.09 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=19.5
Q ss_pred ecCCeEEeeccCCChhhhHHHHH
Q 004169 700 RSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 700 ~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+|++|+|++||+..|+..|...
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~ 62 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQ 62 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCeEEEEccCcCHHHHHHHHH
Confidence 57999999999999998776544
No 323
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=25.33 E-value=53 Score=34.87 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
.++..+ ..+|++|+|.+||+.-|...+.
T Consensus 209 ~l~~~~---~~~~~~vLD~gCGsG~~~i~~a 236 (373)
T 3tm4_A 209 AMIELA---ELDGGSVLDPMCGSGTILIELA 236 (373)
T ss_dssp HHHHHH---TCCSCCEEETTCTTCHHHHHHH
T ss_pred HHHHhh---cCCCCEEEEccCcCcHHHHHHH
Confidence 345555 4789999999999988776543
No 324
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.18 E-value=29 Score=28.24 Aligned_cols=16 Identities=19% Similarity=0.555 Sum_probs=13.4
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 35 ~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 35 ADCNHSFCRACITLNY 50 (85)
T ss_dssp CTTSCCBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999998764
No 325
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=25.14 E-value=37 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 691 iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
|.+.|.-+..+|.+|+|+.||...++..|.
T Consensus 27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~ 56 (246)
T 1y8c_A 27 IIEKCVENNLVFDDYLDLACGTGNLTENLC 56 (246)
T ss_dssp HHHHHHTTTCCTTEEEEETCTTSTTHHHHG
T ss_pred HHHHHHHhCCCCCeEEEeCCCCCHHHHHHH
Confidence 344444444588999999999988776553
No 326
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=25.07 E-value=35 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=21.4
Q ss_pred cccccccCcccchhhHHHHHHhhhceeeecCCeEEeeccCCChhh----hHHHHHHHHh
Q 004169 672 GMRYTSFGRHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFS----CMMKVKLEQM 726 (770)
Q Consensus 672 g~rytsfgrhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~----~~~~~~l~~~ 726 (770)
||.|++||+.++.+.-+..++.++-=. ..+.-++||--|.+|+. ..|.+.+.+.
T Consensus 1 ~m~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~ 58 (417)
T 3g7q_A 1 GMTFSLFGDKFTRHSGITRLMEDLNDG-LRTPGAIMLGGGNPAHIPAMQDYFQTLLTDM 58 (417)
T ss_dssp ---------------CHHHHHHHHHC------CCEECSCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhccccHHHHHHHHHhh-ccCCCceEecCcCCCCCChHHHHHHHHHHHH
Confidence 899999999999876655555443111 12356899999999983 4455555543
No 327
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=25.04 E-value=37 Score=27.42 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=14.1
Q ss_pred CcCCcCcchhhcccCC
Q 004169 303 TCGQFYHPECVSKLLH 318 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~~ 318 (770)
.||+.||..|+..+..
T Consensus 29 ~CgH~fC~~Ci~~~~~ 44 (79)
T 2egp_A 29 DCGHSLCRACITVSNK 44 (79)
T ss_dssp SSSCCCCHHHHSCCCC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998764
No 328
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.87 E-value=26 Score=28.46 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=21.1
Q ss_pred CcccccccCC---CCceeecCCcccccccccccc
Q 004169 215 YFAVCAICDD---GGDVTFCDGRCLRSFHATITA 245 (770)
Q Consensus 215 ~d~VC~IC~~---gGeLL~CdG~C~RsFH~~Cl~ 245 (770)
.+..|.||.+ .++.+..- +|.-.||..|+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~ 54 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVD 54 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEE-TTTEEEETTHHH
T ss_pred CCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHH
Confidence 3578999984 34444444 589999999853
No 329
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=24.78 E-value=27 Score=29.96 Aligned_cols=16 Identities=31% Similarity=0.791 Sum_probs=13.6
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 39 ~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFL 54 (99)
T ss_dssp TTTCCEEEHHHHHHHH
T ss_pred CCCCCHhhHHHHHHHH
Confidence 4799999999998764
No 330
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=24.59 E-value=93 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.528 Sum_probs=21.7
Q ss_pred HHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 691 IVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 691 iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
+++.|. ..+|.+|+|+.||...|+..+.+
T Consensus 49 l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~ 77 (279)
T 3ccf_A 49 LLQLLN--PQPGEFILDLGCGTGQLTEKIAQ 77 (279)
T ss_dssp HHHHHC--CCTTCEEEEETCTTSHHHHHHHH
T ss_pred HHHHhC--CCCCCEEEEecCCCCHHHHHHHh
Confidence 444444 47899999999999888776643
No 331
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.59 E-value=20 Score=30.02 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=12.0
Q ss_pred eecCCcccccccccccc
Q 004169 229 TFCDGRCLRSFHATITA 245 (770)
Q Consensus 229 L~CdG~C~RsFH~~Cl~ 245 (770)
+.--..|.-.||..|+.
T Consensus 42 ~~~~~~C~H~FH~~Ci~ 58 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMS 58 (81)
T ss_dssp CEEEETTSCEEEHHHHH
T ss_pred EEEeCCCCCccChHHHH
Confidence 33333699999999854
No 332
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=24.55 E-value=36 Score=36.09 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.5
Q ss_pred eecCCeEEeeccCCChhhhHHHHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
+.+|.+|||+.||+.-++..|.+.+
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~ 105 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLV 105 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEecCccCHHHHHHHHHh
Confidence 7799999999999998888776654
No 333
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=24.41 E-value=1.2e+02 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=21.9
Q ss_pred hHHHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 686 EKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 686 ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
+-|.+++..+ .+| +|+|+.||...++..|.
T Consensus 19 ~~l~~~~~~~----~~~-~vLdiGcG~G~~~~~l~ 48 (202)
T 2kw5_A 19 DFLVSVANQI----PQG-KILCLAEGEGRNACFLA 48 (202)
T ss_dssp SSHHHHHHHS----CSS-EEEECCCSCTHHHHHHH
T ss_pred HHHHHHHHhC----CCC-CEEEECCCCCHhHHHHH
Confidence 4466666653 578 99999999987766553
No 334
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=24.16 E-value=93 Score=30.25 Aligned_cols=22 Identities=32% Similarity=0.220 Sum_probs=18.5
Q ss_pred eecCCeEEeeccCCChhhhHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~ 720 (770)
+.+|.+|+|+.||+.-++..|.
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la 89 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIK 89 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHH
T ss_pred cCCCCEEEEecCCCCHHHHHHH
Confidence 3689999999999998777665
No 335
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=23.99 E-value=36 Score=31.94 Aligned_cols=29 Identities=10% Similarity=0.426 Sum_probs=23.0
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
++++.|. .+|.+|+|+.||...++..+.+
T Consensus 24 ~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~ 52 (230)
T 3cc8_A 24 NLLKHIK---KEWKEVLDIGCSSGALGAAIKE 52 (230)
T ss_dssp HHHTTCC---TTCSEEEEETCTTSHHHHHHHT
T ss_pred HHHHHhc---cCCCcEEEeCCCCCHHHHHHHh
Confidence 4555554 7899999999999988877654
No 336
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.83 E-value=19 Score=32.39 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=48.0
Q ss_pred ccccccCCC---CceeecCCccccccccccccCcccccc-ccCCcccc-cCCCCcccCccccccC--c--ccccccccCC
Q 004169 217 AVCAICDDG---GDVTFCDGRCLRSFHATITAGKNALCQ-SLGYTQAQ-IDAVPNFLCQNCVYQE--H--QCFACGMLGS 287 (770)
Q Consensus 217 ~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~g~~s~C~-sLGlt~~e-v~~~~~W~C~eC~~~q--h--qCfvCgklGs 287 (770)
.+|+.|+.+ +..|.-. .+.||+.|..=. .|. .|+..... ....+..+|..|-... . .|..|++.-.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~---~~~wH~~CF~C~--~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAI---DQYWHEDCLSCD--LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBBTTTCCBCCSSEEEEET---TEEEETTTCBCT--TTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred ccCcCCCCEeCCcEEEEEC---CCcccHHHcccC--cCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccC
Confidence 579999874 2245555 478999986411 131 12210011 1135788999997542 2 7999987653
Q ss_pred CCCCCCCceeeccCCCcCCcCcchh
Q 004169 288 SDKSSSQEVFPCVSATCGQFYHPEC 312 (770)
Q Consensus 288 sd~ss~~eV~kCsv~~CGrfYH~~C 312 (770)
. ...++. .-++.||+.|
T Consensus 78 ~----~e~~~~----a~~~~~H~~C 94 (131)
T 2xjy_A 78 A----YEMTMR----VKDKVYHLEC 94 (131)
T ss_dssp T----TSEEEE----ETTEEEEGGG
T ss_pred c----cceeEe----eCCceECccC
Confidence 1 112332 3578899888
No 337
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=23.81 E-value=52 Score=37.21 Aligned_cols=71 Identities=28% Similarity=0.422 Sum_probs=45.2
Q ss_pred eeecccchhhHHHHHHHHHHhhcCCCccccccc-CCchhhhhHHHHhhcccccccccccc---cccc--c----cCcccc
Q 004169 614 SITLGLVEGSVKAVRAALEMLDGGCDIEDAKAV-CPPEILCQIFQWKRKLDVYLAPFLHG---MRYT--S----FGRHFT 683 (770)
Q Consensus 614 ~i~~g~~e~sv~a~~~al~~le~g~~i~~aka~-c~p~~l~q~~~w~~kl~~~lapfl~g---~ryt--s----fgrhft 683 (770)
+|+.+...|..-|++|-+|+|..+. +.. .+ -.+ | .| |-+.. .||. - -+|||-
T Consensus 110 ~I~a~~~~G~~~g~qTL~Ql~~~~~--~~~-~~~~~~--------~------~l-p~~~I~D~Prf~~RG~mLD~aR~f~ 171 (512)
T 1jak_A 110 TITARKAAGLFHGVQTLRQLLPPAV--EKD-SAQPGP--------W------LV-AGGTIEDTPRYAWRSAMLDVSRHFF 171 (512)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCGGG--GCS-SCCCCC--------C------EE-CCEEEEECCSCSEEEEEEECSSSCC
T ss_pred EEEEcCHHHHHHHHHHHHHHhhhhh--ccc-ccccCc--------c------cc-cceEEeecCCCCccceeeccCCCCC
Confidence 6888889999999999999886542 000 00 000 0 01 11121 2221 1 289999
Q ss_pred hhhHHHHHHhh--------hceeeecC
Q 004169 684 KVEKLKEIVDR--------LHWYVRSG 702 (770)
Q Consensus 684 k~ekl~~iv~~--------lhwyv~~g 702 (770)
.+|-|++++|. |||++.+.
T Consensus 172 ~~~~ik~~id~ma~~KlN~lh~HltDd 198 (512)
T 1jak_A 172 GVDEVKRYIDRVARYKYNKLHLHLSDD 198 (512)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECBCS
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeccC
Confidence 99999999985 89998764
No 338
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=23.72 E-value=17 Score=32.64 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.8
Q ss_pred Ccccccccccccc
Q 004169 233 GRCLRSFHATITA 245 (770)
Q Consensus 233 G~C~RsFH~~Cl~ 245 (770)
++|.-.||..|+.
T Consensus 71 ~~C~H~FH~~Ci~ 83 (106)
T 3dpl_R 71 GVCNHAFHFHCIS 83 (106)
T ss_dssp ETTSCEEEHHHHH
T ss_pred cccCcEECHHHHH
Confidence 4799999999854
No 339
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=23.56 E-value=41 Score=38.69 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=26.7
Q ss_pred ccccccccCCCCCCCCCceeeccCCCcCCcCcchhhcccCC--CCchhHHHHHHHHHhcCCcee----cCCcccccCcCC
Q 004169 278 QCFACGMLGSSDKSSSQEVFPCVSATCGQFYHPECVSKLLH--PDNESLAEELRERIAAGESFT----CPVHKCFVCQQS 351 (770)
Q Consensus 278 qCfvCgklGssd~ss~~eV~kCsv~~CGrfYH~~CL~~~~~--p~~~~~~~el~krV~~g~~F~----CPlH~C~~C~~~ 351 (770)
.|-.|+..--. ....-++| ..|+-..|..|....+. |........-..+ ....|. ...-+|..|+..
T Consensus 50 ~C~~C~~~i~g---~~~qg~~C--~~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~--~~h~~~~~~~~~~~~C~~C~~~ 122 (674)
T 3pfq_A 50 FCSHCTDFIWG---FGKQGFQC--QVCSFVVHKRCHEFVTFSCPGADKGPASDDPR--SKHKFKIHTYSSPTFCDHCGSL 122 (674)
T ss_dssp -----------------------------------------------------------CCCCCEECCSSCCCCSSSCSC
T ss_pred ccccccccccc---cCCceeEC--CCCCCCcChhhcCcCcccCCCccccccccccc--CCcceeecCCCCCCCCCccccc
Confidence 36666543210 12356789 78999999999875431 1100000000000 011121 123489999775
Q ss_pred ccCccCccceeeccccccccccccCCC
Q 004169 352 EDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 352 edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
-.. -..|-.+|.-|....|.+|...
T Consensus 123 l~g--~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 123 LYG--LIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp CBB--SSSCEECCSSSCCCBCSSTTSS
T ss_pred cch--hhcCccccccCCcchhhhhhhc
Confidence 211 1126789999999999999854
No 340
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=23.49 E-value=25 Score=30.55 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=14.0
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..|.
T Consensus 39 ~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 39 PHCSKLCCFSCIRRWL 54 (100)
T ss_dssp TTTCCEEEHHHHHHHH
T ss_pred CCCCChhhHHHHHHHH
Confidence 5899999999998764
No 341
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=23.24 E-value=22 Score=31.81 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=13.3
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..+.
T Consensus 68 ~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 68 TVCQHNVCKDCLDRSF 83 (124)
T ss_dssp CTTSCEEEHHHHHHHH
T ss_pred eeCCCcccHHHHHHHH
Confidence 3799999999998663
No 342
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=23.20 E-value=33 Score=30.19 Aligned_cols=15 Identities=13% Similarity=0.467 Sum_probs=13.6
Q ss_pred CcCCcCcchhhcccC
Q 004169 303 TCGQFYHPECVSKLL 317 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~ 317 (770)
.||+.|+..|+..+.
T Consensus 32 ~CgH~fC~~Ci~~~~ 46 (115)
T 3l11_A 32 PCNHTLCKPCFQSTV 46 (115)
T ss_dssp TTSCEECHHHHCCCC
T ss_pred CCCCHHhHHHHHHHH
Confidence 699999999999876
No 343
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=22.91 E-value=44 Score=36.01 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHhhhceeeecCCeEEeeccCCChhhhHHH
Q 004169 688 LKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 688 l~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~ 720 (770)
++.+.+.+.|...+|.+|+|++||..-|+..|.
T Consensus 220 l~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la 252 (381)
T 3dmg_A 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLA 252 (381)
T ss_dssp HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHH
T ss_pred HHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHH
Confidence 334444455555689999999999998876654
No 344
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=22.88 E-value=39 Score=33.15 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.7
Q ss_pred eeecCCeEEeeccCCChhhhHHHHH
Q 004169 698 YVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 698 yv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.+.+|.+|+|++||...|+..|...
T Consensus 46 ~~~~~~~vLDiGcG~G~~~~~la~~ 70 (246)
T 2vdv_E 46 QMTKKVTIADIGCGFGGLMIDLSPA 70 (246)
T ss_dssp CBSCCEEEEEETCTTSHHHHHHHHH
T ss_pred cCCCCCEEEEEcCCCCHHHHHHHHh
Confidence 3458999999999999998877654
No 345
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=22.84 E-value=70 Score=30.50 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHHHHHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKL 723 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l 723 (770)
..+++.|- ...+|.+|||+.||...++..+.+.+
T Consensus 33 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~ 66 (234)
T 3dtn_A 33 GVSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKY 66 (234)
T ss_dssp HHHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHC
T ss_pred HHHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhC
Confidence 33444443 36789999999999999998887664
No 346
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=22.65 E-value=18 Score=33.25 Aligned_cols=16 Identities=31% Similarity=0.870 Sum_probs=0.0
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..|++.||..|+..|+
T Consensus 82 ~~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWL 97 (117)
T ss_dssp ----------------
T ss_pred CCcCceEcHHHHHHHH
Confidence 4799999999999886
No 347
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=22.44 E-value=55 Score=31.22 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=16.2
Q ss_pred cCCeEEeeccCCChhhhH
Q 004169 701 SGDTIVDFCCGANDFSCM 718 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~ 718 (770)
+|++|+|++||+.-|+..
T Consensus 54 ~~~~vLDlgcG~G~~~~~ 71 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLE 71 (202)
T ss_dssp TTCEEEETTCTTCHHHHH
T ss_pred CCCeEEEeCCCcCHHHHH
Confidence 789999999999998874
No 348
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=22.34 E-value=37 Score=37.41 Aligned_cols=23 Identities=48% Similarity=0.769 Sum_probs=20.9
Q ss_pred CcccchhhHHHHHHh--------hhceeeec
Q 004169 679 GRHFTKVEKLKEIVD--------RLHWYVRS 701 (770)
Q Consensus 679 grhftk~ekl~~iv~--------~lhwyv~~ 701 (770)
||||-.+|-|++++| .|||++.+
T Consensus 15 aR~f~~~~~ik~~ID~mA~~KlN~lH~HLtD 45 (434)
T 2yl6_A 15 GRKYFSPEQLKEIIDKAKHYGYTDLHLLVGN 45 (434)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCCEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 799999999999997 48999975
No 349
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=22.12 E-value=42 Score=31.65 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=25.7
Q ss_pred hhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHH
Q 004169 684 KVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 684 k~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
..+++.+++..+ .-..+|.+|+|+.||...|+..|.+
T Consensus 35 ~~~~~~~~l~~~-~~~~~~~~vLDiGcG~G~~~~~l~~ 71 (216)
T 3ofk_A 35 ERERHTQLLRLS-LSSGAVSNGLEIGCAAGAFTEKLAP 71 (216)
T ss_dssp HHHHHHHHHHHH-TTTSSEEEEEEECCTTSHHHHHHGG
T ss_pred HHHHHHHHHHHH-cccCCCCcEEEEcCCCCHHHHHHHH
Confidence 345666666532 1245789999999999988877643
No 350
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=22.10 E-value=99 Score=32.85 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhcCCCccccc-----------ccCCchhhhhHHHHh----------hccccccccccccc---cccccC
Q 004169 624 VKAVRAALEMLDGGCDIEDAK-----------AVCPPEILCQIFQWK----------RKLDVYLAPFLHGM---RYTSFG 679 (770)
Q Consensus 624 v~a~~~al~~le~g~~i~~ak-----------a~c~p~~l~q~~~w~----------~kl~~~lapfl~g~---rytsfg 679 (770)
--.|..|.++.++|.++++.. ...-++.|..|.|== +-|+ |-|+|+-. ++..++
T Consensus 163 g~lv~~Aa~l~~~G~s~eeI~~~le~~~~~~~~~f~v~~L~yL~kGGRIs~~~a~iG~lL~--IKPIl~~~~dG~l~~~~ 240 (320)
T 3pl5_A 163 GYLAMLAAQAREEGKSLKETKELILDVGPRLRTFFLVDNLYHLMRGGRLSKTSAIVGSLVN--IKPLLWLDASGKLVPIA 240 (320)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHGGGEEEEEECSCSHHHHHHTCCC--------CTT--EEEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhceEEEEECChHHHHhCCCccHHHHHHHhhhC--ceEEEEEccCCeEEEEe
Confidence 346777889999999976542 223344444444322 2333 45777654 799998
Q ss_pred cccchhhHHHHHHhhhceeeecCCeEEeeccCCChhhhHHHHHHHH
Q 004169 680 RHFTKVEKLKEIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVKLEQ 725 (770)
Q Consensus 680 rhftk~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~l~~ 725 (770)
+--|.---++.+++.+-=++. +..|.=..+|+-+--.-+++.|++
T Consensus 241 KvRg~kka~~~lv~~~~~~~~-~~~v~I~h~~~~e~a~~l~~~l~~ 285 (320)
T 3pl5_A 241 KLRGRKKGMKEMLKRATADVA-HDTAVVAYANDSEAAENLKEQLLA 285 (320)
T ss_dssp EEESHHHHHHHHHHHHTSSCC-SSEEEEEESSCHHHHHHHHHHHHT
T ss_pred eecCHHHHHHHHHHHHHHhcC-CCEEEEEeCCCHHHHHHHHHHHHh
Confidence 888876667777777765555 345554455555666677777765
No 351
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=22.05 E-value=42 Score=33.13 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=20.1
Q ss_pred eeeecCCeEEeeccCCChhhhHHHH
Q 004169 697 WYVRSGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 697 wyv~~gd~ivdfccg~n~f~~~~~~ 721 (770)
-|+.+|.+|+|+.||...++..+..
T Consensus 60 ~~~~~~~~vLDiGcG~G~~~~~l~~ 84 (298)
T 1ri5_A 60 LYTKRGDSVLDLGCGKGGDLLKYER 84 (298)
T ss_dssp HHCCTTCEEEEETCTTTTTHHHHHH
T ss_pred HhCCCCCeEEEECCCCCHHHHHHHH
Confidence 3578999999999999877766543
No 352
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=21.76 E-value=45 Score=32.27 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=19.2
Q ss_pred eecCCeEEeeccCCChhhhHHH
Q 004169 699 VRSGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 699 v~~gd~ivdfccg~n~f~~~~~ 720 (770)
.++|++|+|+.||...++..|.
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~ 79 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQ 79 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHH
T ss_pred CCCCCeEEEEeccCCHHHHHHH
Confidence 6789999999999998887764
No 353
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=21.58 E-value=36 Score=30.92 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=21.9
Q ss_pred CcccCccccccCcccccccccCCCCCCCCCceeecc-CCCcCCcCcc
Q 004169 265 PNFLCQNCVYQEHQCFACGMLGSSDKSSSQEVFPCV-SATCGQFYHP 310 (770)
Q Consensus 265 ~~W~C~eC~~~qhqCfvCgklGssd~ss~~eV~kCs-v~~CGrfYH~ 310 (770)
++-.|+.|......=-.|. .+.+|.|. +..|.|.|--
T Consensus 36 ~~k~Cp~C~~~V~rVe~~~---------~~~if~C~~~~~CkrtyLs 73 (101)
T 3vk6_A 36 GDKMCPGCSDPVQRIEQCT---------RGSLFMCSIVQGCKRTYLS 73 (101)
T ss_dssp TCCBCTTTCCBCSEEEEEE---------GGGCCCCCCCCCCCCCCSS
T ss_pred cCCCCcCcCCeeeeeEEec---------cCCEEECCCCCCHHHHhcC
Confidence 3456777775432211122 24799998 8888887743
No 354
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.53 E-value=64 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=20.7
Q ss_pred CCCcccccccCCC---CceeecCCcccccccccccc
Q 004169 213 ENYFAVCAICDDG---GDVTFCDGRCLRSFHATITA 245 (770)
Q Consensus 213 d~~d~VC~IC~~g---GeLL~CdG~C~RsFH~~Cl~ 245 (770)
...+..|.||.+. +..+.-- +|...||..|+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~ 46 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIV 46 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTH
T ss_pred CCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHH
Confidence 3446789999654 2322222 588999999853
No 355
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=21.53 E-value=46 Score=35.27 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.1
Q ss_pred cCCeEEeeccCCChhhhHHH
Q 004169 701 SGDTIVDFCCGANDFSCMMK 720 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~~~ 720 (770)
.|++|+|+|||+.-|+..|.
T Consensus 213 ~~~~vLDl~cG~G~~~l~la 232 (369)
T 3bt7_A 213 SKGDLLELYCGNGNFSLALA 232 (369)
T ss_dssp CCSEEEEESCTTSHHHHHHG
T ss_pred CCCEEEEccCCCCHHHHHHH
Confidence 37899999999999987664
No 356
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=21.48 E-value=48 Score=32.94 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.8
Q ss_pred cCCeEEeeccCCChhhhHHHH
Q 004169 701 SGDTIVDFCCGANDFSCMMKV 721 (770)
Q Consensus 701 ~gd~ivdfccg~n~f~~~~~~ 721 (770)
+|.+|+|+.||..-|+..|.+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~ 140 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSL 140 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHH
T ss_pred CCCcEEEECCCCCHHHHHHHH
Confidence 899999999999988776543
No 357
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=21.30 E-value=38 Score=36.48 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred CcccchhhHHHHHHhh--------hceeeecC
Q 004169 679 GRHFTKVEKLKEIVDR--------LHWYVRSG 702 (770)
Q Consensus 679 grhftk~ekl~~iv~~--------lhwyv~~g 702 (770)
||||-++|-|++++|. |||++.+.
T Consensus 26 aR~f~~~~~ik~~id~mA~~KlN~lH~HltDd 57 (367)
T 1yht_A 26 ARHFYSPEVIKSFIDTISLSGGNFLHLHFSDH 57 (367)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCEEEEECBSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEEEEcC
Confidence 8999999999999974 89999873
No 358
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=21.26 E-value=60 Score=30.94 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHhhhceeeecCCeEEeeccCCChhhhHHHHH
Q 004169 690 EIVDRLHWYVRSGDTIVDFCCGANDFSCMMKVK 722 (770)
Q Consensus 690 ~iv~~lhwyv~~gd~ivdfccg~n~f~~~~~~~ 722 (770)
.|...|+ ..+|.+|+|+.||...++..+.+.
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~ 64 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEH 64 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHT
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHC
Confidence 3444454 248999999999999888777653
No 359
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=32 Score=27.71 Aligned_cols=15 Identities=33% Similarity=0.862 Sum_probs=13.2
Q ss_pred CcCCcCcchhhcccC
Q 004169 303 TCGQFYHPECVSKLL 317 (770)
Q Consensus 303 ~CGrfYH~~CL~~~~ 317 (770)
.||+.||..|+..|+
T Consensus 35 ~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 35 PCKHAFHRKCLIKWL 49 (74)
T ss_dssp TTTEEEEHHHHHHHH
T ss_pred CCCCEecHHHHHHHH
Confidence 599999999998774
No 360
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=21.04 E-value=62 Score=36.84 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=46.4
Q ss_pred eeecccchhhHHHHHHHHHHhhcCCCcccccccCCchhhhhHHHHhhcccccccc--cccccccc------ccCcccchh
Q 004169 614 SITLGLVEGSVKAVRAALEMLDGGCDIEDAKAVCPPEILCQIFQWKRKLDVYLAP--FLHGMRYT------SFGRHFTKV 685 (770)
Q Consensus 614 ~i~~g~~e~sv~a~~~al~~le~g~~i~~aka~c~p~~l~q~~~w~~kl~~~lap--fl~g~ryt------sfgrhftk~ 685 (770)
+|+.+...|..-|++|-+|+|..+.. ....+-+ + .| .|+. +-.-.||- =-+|||-.+
T Consensus 134 ~I~a~~~~G~~~glqTL~QLl~~~~~--~~~~~~g--~-----~~------~lp~~~I~D~Prf~~RG~mLDvsR~f~~~ 198 (525)
T 3gh5_A 134 TLTANKPEGVFRGNQTLLQLLPAGIE--KNTVVSG--V-----QW------VIPHSNISDKPEYEYRGLMLDVARHFFTV 198 (525)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCTTTT--CSSCCCS--C-----CC------EEEEEEEEECCSCSEEEEEEECSSSCCCH
T ss_pred EEEECCHHHHHHHHHHHHHHHhhhcc--ccccccC--c-----ce------eccceEEeecCCcceeccccCCCCCCCCH
Confidence 68889999999999999999875411 0000000 0 00 0100 11222332 137999999
Q ss_pred hHHHHHHhh--------hceeeecC
Q 004169 686 EKLKEIVDR--------LHWYVRSG 702 (770)
Q Consensus 686 ekl~~iv~~--------lhwyv~~g 702 (770)
|-|++++|. |||++.+.
T Consensus 199 ~~ik~~id~mA~~KlN~lH~HltDd 223 (525)
T 3gh5_A 199 DEVKRQIDLASQYKINKFHMHLSDD 223 (525)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECBCS
T ss_pred HHHHHHHHHHHHcCCcEEEEEeccC
Confidence 999999986 89998764
No 361
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.51 E-value=28 Score=29.54 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=23.4
Q ss_pred CcccccCcCCccCccCccceeeccccccccccccCCC
Q 004169 342 VHKCFVCQQSEDMNVEDLQLAICRRCPKAYHRKCLPT 378 (770)
Q Consensus 342 lH~C~~C~~~edk~~~e~qLi~C~RCP~AYH~kCLP~ 378 (770)
...|.+|...-. +-.+|..|..+||..|+..
T Consensus 15 i~~C~IC~~~i~------~g~~C~~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 15 VKICNICHSLLI------QGQSCETCGIRMHLPCVAK 45 (74)
T ss_dssp SCBCSSSCCBCS------SSEECSSSCCEECHHHHHH
T ss_pred CCcCcchhhHcc------cCCccCCCCchhhHHHHHH
Confidence 347888888653 2357999999999999754
No 362
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=20.41 E-value=65 Score=30.01 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred hhHHHHHHhhhceeeecCCeEEeeccCCChhh
Q 004169 685 VEKLKEIVDRLHWYVRSGDTIVDFCCGANDFS 716 (770)
Q Consensus 685 ~ekl~~iv~~lhwyv~~gd~ivdfccg~n~f~ 716 (770)
..-+..+++.+. ...+|.+|+|+.||...++
T Consensus 8 ~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~ 38 (209)
T 2p8j_A 8 QPQLYRFLKYCN-ESNLDKTVLDCGAGGDLPP 38 (209)
T ss_dssp CTHHHHHHHHHH-HSSSCSEEEEESCCSSSCT
T ss_pred hhhHHHHHHHHh-ccCCCCEEEEECCCCCHHH
Confidence 334455555444 3457899999999998773
No 363
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=20.39 E-value=38 Score=31.83 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=13.8
Q ss_pred CCcCCcCcchhhcccC
Q 004169 302 ATCGQFYHPECVSKLL 317 (770)
Q Consensus 302 ~~CGrfYH~~CL~~~~ 317 (770)
..||+.||..|+..++
T Consensus 71 ~~CgH~fC~~Ci~~~~ 86 (165)
T 2ckl_B 71 KECLHRFCADCIITAL 86 (165)
T ss_dssp TTTCCEEEHHHHHHHH
T ss_pred CCCCChhHHHHHHHHH
Confidence 4799999999998764
No 364
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=20.37 E-value=43 Score=31.63 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHhhhceeeecCCeEEeeccCCChhhhHH
Q 004169 689 KEIVDRLHWYVRSGDTIVDFCCGANDFSCMM 719 (770)
Q Consensus 689 ~~iv~~lhwyv~~gd~ivdfccg~n~f~~~~ 719 (770)
..+++.|.-. .+|.+|+|+.||...++..+
T Consensus 56 ~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l 85 (215)
T 2zfu_A 56 DRIARDLRQR-PASLVVADFGCGDCRLASSI 85 (215)
T ss_dssp HHHHHHHHTS-CTTSCEEEETCTTCHHHHHC
T ss_pred HHHHHHHhcc-CCCCeEEEECCcCCHHHHHh
Confidence 3444444322 68899999999999998877
Done!