Query 004170
Match_columns 770
No_of_seqs 167 out of 225
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 18:46:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 98.9 1.1E-09 2.5E-14 84.9 4.4 44 320-374 1-45 (45)
2 PF00395 SLH: S-layer homology 97.7 3.7E-05 8.1E-10 59.7 3.7 44 398-447 1-45 (45)
3 PF08317 Spc7: Spc7 kinetochor 95.9 0.32 6.9E-06 52.6 16.6 92 542-639 206-297 (325)
4 KOG0018 Structural maintenance 95.5 4.7 0.0001 50.4 25.3 218 528-760 262-515 (1141)
5 smart00787 Spc7 Spc7 kinetocho 94.5 1.4 2.9E-05 48.2 16.1 125 509-639 167-292 (312)
6 PF09726 Macoilin: Transmembra 93.9 11 0.00024 45.5 23.0 91 545-635 460-575 (697)
7 KOG0994 Extracellular matrix g 93.7 16 0.00034 46.6 23.9 92 539-630 1465-1578(1758)
8 PRK00106 hypothetical protein; 91.7 20 0.00044 42.2 20.6 92 540-632 113-217 (535)
9 KOG1029 Endocytic adaptor prot 91.2 30 0.00065 42.7 21.4 54 545-598 444-497 (1118)
10 PF10186 Atg14: UV radiation r 91.1 21 0.00045 36.9 18.2 32 649-680 178-210 (302)
11 PRK00106 hypothetical protein; 90.9 22 0.00047 42.0 19.9 11 634-644 255-265 (535)
12 COG4942 Membrane-bound metallo 90.2 41 0.00089 38.8 21.4 109 507-622 147-255 (420)
13 PF09726 Macoilin: Transmembra 89.6 40 0.00086 41.0 21.1 136 458-596 422-575 (697)
14 TIGR03185 DNA_S_dndD DNA sulfu 89.4 53 0.0011 39.0 30.5 88 502-589 229-316 (650)
15 PRK12704 phosphodiesterase; Pr 89.2 41 0.00089 39.4 20.3 38 594-632 163-202 (520)
16 PF05667 DUF812: Protein of un 89.0 59 0.0013 38.9 26.4 93 506-603 331-424 (594)
17 PF07888 CALCOCO1: Calcium bin 88.5 61 0.0013 38.6 24.4 8 434-441 109-116 (546)
18 TIGR01069 mutS2 MutS2 family p 88.4 4.5 9.7E-05 49.1 12.4 64 510-573 497-560 (771)
19 TIGR02168 SMC_prok_B chromosom 88.3 70 0.0015 39.0 30.0 8 66-73 35-42 (1179)
20 PF10186 Atg14: UV radiation r 87.9 31 0.00068 35.6 16.7 18 689-706 194-211 (302)
21 TIGR03319 YmdA_YtgF conserved 87.3 64 0.0014 37.8 20.3 39 593-632 156-196 (514)
22 COG1196 Smc Chromosome segrega 87.0 98 0.0021 39.5 23.0 21 275-295 111-131 (1163)
23 PRK11637 AmiB activator; Provi 86.2 17 0.00036 40.8 14.5 46 516-561 179-224 (428)
24 PRK12704 phosphodiesterase; Pr 86.1 62 0.0013 38.0 19.4 18 620-643 232-249 (520)
25 PF00769 ERM: Ezrin/radixin/mo 85.8 42 0.00092 35.6 16.4 101 500-601 3-106 (246)
26 TIGR03319 YmdA_YtgF conserved 85.6 64 0.0014 37.8 19.1 18 620-643 226-243 (514)
27 PLN03188 kinesin-12 family pro 83.5 23 0.00049 45.5 15.1 119 475-596 1105-1252(1320)
28 PF12128 DUF3584: Protein of u 82.5 1.6E+02 0.0034 37.9 31.2 185 489-685 718-919 (1201)
29 KOG0996 Structural maintenance 81.8 1.7E+02 0.0038 37.9 26.6 106 529-634 377-494 (1293)
30 PF08317 Spc7: Spc7 kinetochor 81.8 79 0.0017 34.6 16.9 34 488-524 137-170 (325)
31 PF09738 DUF2051: Double stran 81.0 33 0.00072 37.8 13.7 79 577-663 123-201 (302)
32 PF10473 CENP-F_leu_zip: Leuci 80.3 66 0.0014 32.0 14.2 85 503-594 17-104 (140)
33 TIGR02169 SMC_prok_A chromosom 79.8 1.6E+02 0.0035 36.2 33.1 19 276-294 110-128 (1164)
34 COG1579 Zn-ribbon protein, pos 79.4 96 0.0021 33.4 17.6 59 547-605 91-149 (239)
35 PRK00409 recombination and DNA 79.1 15 0.00032 44.8 11.4 59 510-568 502-560 (782)
36 PTZ00121 MAEBL; Provisional 78.9 1.8E+02 0.0039 38.7 20.3 33 443-475 1088-1120(2084)
37 PRK10361 DNA recombination pro 77.9 1.5E+02 0.0033 34.9 19.9 50 699-749 170-222 (475)
38 KOG0996 Structural maintenance 77.8 2.3E+02 0.005 36.9 28.0 79 544-625 453-531 (1293)
39 KOG0250 DNA repair protein RAD 77.7 53 0.0011 41.7 15.4 123 467-593 341-463 (1074)
40 TIGR01069 mutS2 MutS2 family p 77.4 47 0.001 40.7 14.8 49 513-561 528-577 (771)
41 PF09730 BicD: Microtubule-ass 76.2 1.4E+02 0.003 36.9 17.9 114 502-615 33-149 (717)
42 KOG0579 Ste20-like serine/thre 76.2 93 0.002 38.4 16.1 74 492-565 837-947 (1187)
43 PTZ00121 MAEBL; Provisional 76.0 2.3E+02 0.0049 37.9 20.0 51 466-516 1136-1188(2084)
44 PHA02562 46 endonuclease subun 75.1 1.6E+02 0.0034 33.7 25.2 17 616-632 266-282 (562)
45 PF10168 Nup88: Nuclear pore c 75.0 87 0.0019 38.3 16.0 22 618-639 649-670 (717)
46 PRK09039 hypothetical protein; 74.6 1.5E+02 0.0032 33.1 19.4 103 498-607 69-171 (343)
47 COG1196 Smc Chromosome segrega 73.4 2.7E+02 0.0059 35.6 32.3 16 361-376 112-127 (1163)
48 PF10146 zf-C4H2: Zinc finger- 73.3 87 0.0019 33.3 13.8 46 499-545 4-49 (230)
49 PF09731 Mitofilin: Mitochondr 73.0 1.9E+02 0.0042 33.7 22.4 27 512-538 260-286 (582)
50 PRK10884 SH3 domain-containing 72.9 36 0.00078 35.5 10.8 27 499-525 89-115 (206)
51 PF05565 Sipho_Gp157: Siphovir 72.8 47 0.001 33.1 11.1 79 547-632 3-81 (162)
52 PLN03188 kinesin-12 family pro 72.7 3.1E+02 0.0068 36.0 23.2 99 577-708 1069-1169(1320)
53 PRK12705 hypothetical protein; 72.6 2E+02 0.0044 34.0 17.7 14 633-646 227-240 (508)
54 KOG1029 Endocytic adaptor prot 72.5 2.7E+02 0.0058 35.1 22.0 17 669-685 445-461 (1118)
55 PF00038 Filament: Intermediat 72.3 1.4E+02 0.003 31.8 18.6 121 480-606 179-305 (312)
56 TIGR00634 recN DNA repair prot 71.7 1.1E+02 0.0023 35.9 15.3 149 455-607 210-373 (563)
57 PRK12705 hypothetical protein; 70.9 91 0.002 36.8 14.4 62 553-619 99-160 (508)
58 KOG0161 Myosin class II heavy 70.8 4.1E+02 0.0088 36.5 30.3 88 540-630 1243-1330(1930)
59 KOG4302 Microtubule-associated 70.1 2.7E+02 0.0058 34.2 20.7 138 616-765 179-325 (660)
60 PF05957 DUF883: Bacterial pro 69.8 24 0.00053 31.7 7.7 47 671-717 8-54 (94)
61 PRK09039 hypothetical protein; 69.0 2E+02 0.0042 32.1 17.1 21 454-475 46-66 (343)
62 TIGR00606 rad50 rad50. This fa 68.7 3.6E+02 0.0078 35.1 29.5 40 592-631 827-866 (1311)
63 PF03962 Mnd1: Mnd1 family; I 66.6 50 0.0011 33.8 10.0 87 508-612 81-167 (188)
64 COG0419 SbcC ATPase involved i 65.8 3.4E+02 0.0074 33.7 23.4 240 505-764 483-755 (908)
65 KOG0979 Structural maintenance 64.9 4E+02 0.0088 34.3 19.5 47 518-564 675-721 (1072)
66 KOG2391 Vacuolar sorting prote 64.6 24 0.00051 39.8 7.8 43 519-561 216-258 (365)
67 KOG0977 Nuclear envelope prote 64.3 2E+02 0.0042 34.6 15.4 124 463-596 58-185 (546)
68 smart00502 BBC B-Box C-termina 64.2 1.1E+02 0.0023 27.4 10.8 81 663-743 12-92 (127)
69 PF05667 DUF812: Protein of un 64.1 3.3E+02 0.0071 32.9 18.6 33 260-292 71-105 (594)
70 PTZ00266 NIMA-related protein 63.9 78 0.0017 40.3 12.8 11 286-296 269-279 (1021)
71 PF14643 DUF4455: Domain of un 63.8 2.8E+02 0.0061 32.1 23.5 259 506-768 25-321 (473)
72 PF05262 Borrelia_P83: Borreli 63.2 3.1E+02 0.0068 32.5 17.1 38 328-376 75-112 (489)
73 PRK02292 V-type ATP synthase s 62.6 1.7E+02 0.0037 29.2 13.9 52 526-582 61-112 (188)
74 PRK06569 F0F1 ATP synthase sub 61.8 1.4E+02 0.0029 30.3 11.8 85 473-559 29-117 (155)
75 KOG0976 Rho/Rac1-interacting s 60.5 4.5E+02 0.0098 33.4 25.7 263 464-741 319-632 (1265)
76 TIGR02680 conserved hypothetic 60.4 5.2E+02 0.011 34.0 29.7 60 655-717 1076-1140(1353)
77 KOG4673 Transcription factor T 60.3 4.3E+02 0.0092 33.0 27.3 60 508-571 400-468 (961)
78 PRK10361 DNA recombination pro 59.8 3.6E+02 0.0077 31.9 23.7 12 591-602 85-96 (475)
79 KOG0976 Rho/Rac1-interacting s 59.8 4.7E+02 0.01 33.3 24.6 72 527-601 322-396 (1265)
80 KOG0933 Structural maintenance 58.9 5.2E+02 0.011 33.5 28.8 71 663-733 960-1036(1174)
81 PF07464 ApoLp-III: Apolipopho 58.9 60 0.0013 32.7 8.8 102 665-766 38-146 (155)
82 PF04156 IncA: IncA protein; 58.1 2E+02 0.0043 28.5 14.5 26 504-529 96-121 (191)
83 PRK11281 hypothetical protein; 57.3 5.6E+02 0.012 33.4 21.6 26 607-632 229-254 (1113)
84 PF07780 Spb1_C: Spb1 C-termin 57.0 54 0.0012 34.7 8.5 103 392-516 62-164 (215)
85 COG2433 Uncharacterized conser 57.0 90 0.0019 37.7 11.1 33 568-600 476-508 (652)
86 TIGR03545 conserved hypothetic 56.6 63 0.0014 38.3 9.9 46 539-584 213-258 (555)
87 KOG2129 Uncharacterized conser 56.5 34 0.00074 39.6 7.4 126 522-666 92-246 (552)
88 PF07246 Phlebovirus_NSM: Phle 56.3 1.2E+02 0.0026 33.2 11.1 40 586-625 197-236 (264)
89 KOG0995 Centromere-associated 55.9 4.5E+02 0.0097 31.9 31.6 126 509-641 275-400 (581)
90 KOG0999 Microtubule-associated 55.8 3.7E+02 0.008 32.8 15.4 78 503-583 107-190 (772)
91 PF14362 DUF4407: Domain of un 55.6 2.9E+02 0.0063 29.6 15.6 22 576-597 192-213 (301)
92 PRK03918 chromosome segregatio 55.5 4.6E+02 0.01 31.9 32.3 16 507-522 204-219 (880)
93 TIGR03185 DNA_S_dndD DNA sulfu 54.8 4.4E+02 0.0096 31.5 25.7 29 559-587 251-279 (650)
94 PF12128 DUF3584: Protein of u 54.4 6E+02 0.013 32.9 32.6 17 363-379 218-234 (1201)
95 KOG1899 LAR transmembrane tyro 54.3 1.9E+02 0.0042 35.4 13.1 57 455-513 105-163 (861)
96 PF05701 WEMBL: Weak chloropla 54.0 4.3E+02 0.0093 31.1 20.3 85 503-587 274-358 (522)
97 COG4372 Uncharacterized protei 53.6 4.3E+02 0.0093 31.0 18.0 22 507-528 99-120 (499)
98 PRK02224 chromosome segregatio 53.3 5.1E+02 0.011 31.7 32.6 16 567-582 259-274 (880)
99 PHA02562 46 endonuclease subun 52.8 4.1E+02 0.0088 30.5 22.1 14 435-448 144-157 (562)
100 PRK00247 putative inner membra 52.5 1.3E+02 0.0027 35.0 11.2 59 574-632 321-381 (429)
101 TIGR03545 conserved hypothetic 52.3 1.6E+02 0.0034 35.2 12.2 61 544-604 190-250 (555)
102 PF04111 APG6: Autophagy prote 51.9 1E+02 0.0023 33.8 10.1 31 516-546 52-82 (314)
103 KOG0241 Kinesin-like protein [ 51.7 1.1E+02 0.0024 39.0 11.0 77 546-642 365-445 (1714)
104 KOG4403 Cell surface glycoprot 51.7 3E+02 0.0065 32.5 13.7 75 543-626 291-375 (575)
105 KOG4809 Rab6 GTPase-interactin 51.6 3.1E+02 0.0066 33.3 14.0 154 468-629 406-567 (654)
106 cd07671 F-BAR_PSTPIP1 The F-BA 51.2 2.5E+02 0.0055 29.8 12.4 97 527-634 21-118 (242)
107 KOG3850 Predicted membrane pro 50.8 4.7E+02 0.01 30.6 15.0 54 456-512 262-315 (455)
108 KOG0161 Myosin class II heavy 50.7 8.7E+02 0.019 33.7 33.9 42 527-568 921-962 (1930)
109 PF12072 DUF3552: Domain of un 49.9 3.1E+02 0.0066 28.2 22.3 35 597-631 162-197 (201)
110 PF01442 Apolipoprotein: Apoli 49.2 2.4E+02 0.0051 26.7 20.2 9 751-759 187-195 (202)
111 PRK04863 mukB cell division pr 48.7 8.3E+02 0.018 32.9 26.9 56 569-628 372-427 (1486)
112 TIGR02169 SMC_prok_A chromosom 48.3 6.3E+02 0.014 31.3 33.5 16 361-376 110-125 (1164)
113 PTZ00266 NIMA-related protein 48.3 2.7E+02 0.0059 35.8 13.9 6 500-505 435-440 (1021)
114 TIGR02231 conserved hypothetic 47.9 1.3E+02 0.0029 34.6 10.6 96 503-613 71-167 (525)
115 KOG4286 Dystrophin-like protei 47.1 6.5E+02 0.014 31.8 16.0 188 502-725 91-293 (966)
116 PF00521 DNA_topoisoIV: DNA gy 46.6 1.8E+02 0.004 33.1 11.2 50 556-612 375-424 (426)
117 PF07798 DUF1640: Protein of u 46.5 3.2E+02 0.007 27.5 17.1 22 564-585 107-128 (177)
118 PF03962 Mnd1: Mnd1 family; I 46.2 3.1E+02 0.0068 28.2 11.8 48 578-632 108-155 (188)
119 PF10146 zf-C4H2: Zinc finger- 46.1 4E+02 0.0087 28.5 14.9 90 524-631 11-100 (230)
120 KOG2010 Double stranded RNA bi 46.0 2.1E+02 0.0046 32.5 11.2 77 562-645 139-219 (405)
121 KOG0612 Rho-associated, coiled 44.6 9E+02 0.019 32.1 20.4 171 460-630 444-631 (1317)
122 KOG0995 Centromere-associated 44.3 6.7E+02 0.014 30.5 29.3 58 569-626 442-499 (581)
123 PF14362 DUF4407: Domain of un 44.3 4.3E+02 0.0093 28.3 14.4 34 575-608 184-217 (301)
124 KOG4661 Hsp27-ERE-TATA-binding 44.2 92 0.002 37.6 8.5 36 535-574 653-688 (940)
125 PF10481 CENP-F_N: Cenp-F N-te 44.1 2.7E+02 0.0059 31.0 11.4 62 538-599 63-128 (307)
126 KOG0979 Structural maintenance 43.6 2E+02 0.0044 36.7 11.6 15 616-630 777-791 (1072)
127 PF13870 DUF4201: Domain of un 43.4 3.5E+02 0.0075 27.0 11.4 46 512-557 44-89 (177)
128 PF15290 Syntaphilin: Golgi-lo 43.3 87 0.0019 34.7 7.7 62 561-629 63-124 (305)
129 smart00787 Spc7 Spc7 kinetocho 43.2 5.1E+02 0.011 28.8 16.7 114 479-597 125-242 (312)
130 KOG2129 Uncharacterized conser 42.9 4.8E+02 0.01 30.8 13.5 59 537-595 259-317 (552)
131 PF10498 IFT57: Intra-flagella 42.7 5.6E+02 0.012 29.1 14.2 46 488-534 213-258 (359)
132 KOG0977 Nuclear envelope prote 42.6 6.9E+02 0.015 30.2 17.5 28 572-599 203-234 (546)
133 PF10191 COG7: Golgi complex c 42.2 1.7E+02 0.0037 36.0 10.7 114 643-762 4-125 (766)
134 PF02601 Exonuc_VII_L: Exonucl 42.0 4.7E+02 0.01 28.1 15.0 10 633-642 280-289 (319)
135 PF04111 APG6: Autophagy prote 41.4 3.3E+02 0.0071 30.1 11.8 15 696-710 242-256 (314)
136 PRK10884 SH3 domain-containing 41.3 1.5E+02 0.0032 31.1 8.7 13 513-525 96-108 (206)
137 PF07352 Phage_Mu_Gam: Bacteri 41.0 1.5E+02 0.0032 29.0 8.3 98 576-680 6-103 (149)
138 TIGR00606 rad50 rad50. This fa 40.9 9.6E+02 0.021 31.4 33.3 62 502-563 750-817 (1311)
139 KOG2685 Cystoskeletal protein 40.8 5.9E+02 0.013 29.8 13.9 123 455-589 45-194 (421)
140 PF06637 PV-1: PV-1 protein (P 40.8 3.9E+02 0.0084 31.1 12.3 67 534-604 321-387 (442)
141 PF02841 GBP_C: Guanylate-bind 40.7 3.8E+02 0.0082 29.0 12.0 9 283-291 5-13 (297)
142 KOG2264 Exostosin EXT1L [Signa 40.4 1.3E+02 0.0029 36.3 9.0 26 573-598 114-139 (907)
143 PRK03918 chromosome segregatio 40.0 7.7E+02 0.017 30.0 29.1 64 532-595 204-267 (880)
144 PF05262 Borrelia_P83: Borreli 39.8 7.2E+02 0.016 29.6 16.2 86 464-560 170-256 (489)
145 PRK10404 hypothetical protein; 39.7 1.5E+02 0.0032 28.0 7.6 58 659-716 3-60 (101)
146 KOG0239 Kinesin (KAR3 subfamil 39.2 8.3E+02 0.018 30.1 18.6 70 554-626 243-312 (670)
147 PF06160 EzrA: Septation ring 39.0 7.3E+02 0.016 29.5 26.2 170 456-631 180-360 (560)
148 TIGR02680 conserved hypothetic 38.9 1.1E+03 0.023 31.3 27.8 14 279-292 139-152 (1353)
149 COG2433 Uncharacterized conser 38.3 4.7E+02 0.01 32.1 13.0 62 276-375 268-329 (652)
150 PF12325 TMF_TATA_bd: TATA ele 38.3 2.4E+02 0.0053 27.4 9.1 73 511-583 34-106 (120)
151 COG4575 ElaB Uncharacterized c 38.2 1.4E+02 0.003 28.8 7.2 63 693-755 11-73 (104)
152 PF08614 ATG16: Autophagy prot 37.8 2.2E+02 0.0048 28.9 9.3 45 572-620 129-173 (194)
153 PF04728 LPP: Lipoprotein leuc 37.7 1.8E+02 0.004 25.2 7.2 44 574-621 4-47 (56)
154 KOG2391 Vacuolar sorting prote 37.7 1.1E+02 0.0024 34.8 7.5 11 602-612 268-278 (365)
155 PF04576 Zein-binding: Zein-bi 37.6 1.2E+02 0.0027 28.6 6.7 82 503-597 6-94 (94)
156 cd00179 SynN Syntaxin N-termin 37.3 3.6E+02 0.0079 25.4 12.1 97 662-762 10-120 (151)
157 PF05335 DUF745: Protein of un 37.2 5E+02 0.011 27.1 12.8 93 538-630 60-152 (188)
158 COG4768 Uncharacterized protei 37.1 2.9E+02 0.0063 27.9 9.5 43 659-702 43-85 (139)
159 PF14992 TMCO5: TMCO5 family 36.6 3.4E+02 0.0074 30.1 10.8 93 518-610 53-153 (280)
160 PF00038 Filament: Intermediat 36.0 5.6E+02 0.012 27.3 24.7 20 604-623 116-135 (312)
161 PF12777 MT: Microtubule-bindi 35.9 2.5E+02 0.0055 31.0 10.0 57 541-597 25-81 (344)
162 PRK10869 recombination and rep 35.7 6.9E+02 0.015 29.7 14.0 27 456-482 207-234 (553)
163 KOG0971 Microtubule-associated 34.7 1.1E+03 0.025 30.5 21.6 25 573-597 325-349 (1243)
164 PF09537 DUF2383: Domain of un 34.1 1.6E+02 0.0034 26.8 6.9 98 664-769 7-106 (111)
165 TIGR00634 recN DNA repair prot 34.0 8.5E+02 0.018 28.7 17.1 26 497-522 213-238 (563)
166 KOG0163 Myosin class VI heavy 33.6 9.3E+02 0.02 30.8 14.5 63 507-574 900-962 (1259)
167 PF04094 DUF390: Protein of un 33.5 3.6E+02 0.0078 33.6 11.2 79 531-619 392-485 (828)
168 PRK15396 murein lipoprotein; P 33.5 1.6E+02 0.0034 26.9 6.6 44 574-621 26-69 (78)
169 PF10168 Nup88: Nuclear pore c 33.3 8.5E+02 0.018 30.2 14.6 29 549-577 611-640 (717)
170 PF02841 GBP_C: Guanylate-bind 32.0 5.5E+02 0.012 27.7 11.6 15 283-297 36-50 (297)
171 PF00015 MCPsignal: Methyl-acc 32.0 4.7E+02 0.01 25.5 10.2 10 760-769 202-211 (213)
172 PF01991 vATP-synt_E: ATP synt 31.7 5E+02 0.011 25.4 13.6 57 508-565 36-92 (198)
173 PRK10807 paraquat-inducible pr 31.2 3.4E+02 0.0074 32.3 10.6 79 660-748 412-491 (547)
174 PF05917 DUF874: Helicobacter 31.1 2.9E+02 0.0062 31.2 9.2 63 541-603 151-213 (398)
175 PF00210 Ferritin: Ferritin-li 31.1 4E+02 0.0086 24.0 10.4 130 575-714 1-140 (142)
176 PF10211 Ax_dynein_light: Axon 31.0 6E+02 0.013 26.1 14.5 13 478-490 81-93 (189)
177 PF03938 OmpH: Outer membrane 31.0 4.8E+02 0.01 24.9 13.4 51 547-599 52-102 (158)
178 TIGR01843 type_I_hlyD type I s 30.6 7.3E+02 0.016 27.0 18.5 27 572-598 202-228 (423)
179 KOG4403 Cell surface glycoprot 30.2 5.3E+02 0.012 30.6 11.4 61 658-721 354-421 (575)
180 PRK10404 hypothetical protein; 29.9 4.8E+02 0.01 24.6 10.5 51 671-721 8-58 (101)
181 PF00816 Histone_HNS: H-NS his 29.6 54 0.0012 29.4 3.1 52 610-661 12-80 (93)
182 PF15642 Tox-ODYAM1: Toxin in 29.5 2.3E+02 0.005 31.7 8.1 71 487-563 95-166 (385)
183 PF12126 DUF3583: Protein of u 29.4 6.3E+02 0.014 28.6 11.4 82 511-607 28-121 (324)
184 COG1318 Predicted transcriptio 29.2 5.3E+02 0.011 27.1 10.2 102 437-546 38-155 (182)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 28.9 5.3E+02 0.011 24.8 14.6 90 502-591 30-119 (132)
186 PF05911 DUF869: Plant protein 28.8 1.3E+03 0.027 29.2 16.6 78 517-597 81-158 (769)
187 PF06637 PV-1: PV-1 protein (P 28.7 5.1E+02 0.011 30.2 10.9 46 505-550 319-364 (442)
188 KOG1103 Predicted coiled-coil 28.6 4.9E+02 0.011 30.2 10.6 50 480-529 209-264 (561)
189 KOG4429 Uncharacterized conser 28.2 7E+02 0.015 28.4 11.5 39 479-518 38-82 (421)
190 PRK06800 fliH flagellar assemb 27.7 4.6E+02 0.01 28.0 9.6 18 616-633 81-98 (228)
191 TIGR03007 pepcterm_ChnLen poly 27.5 9.6E+02 0.021 27.3 20.1 38 547-584 256-293 (498)
192 KOG2896 UV radiation resistanc 27.3 1E+03 0.022 27.6 13.8 103 528-630 52-170 (377)
193 PRK05689 fliJ flagellar biosyn 27.3 5.6E+02 0.012 24.5 16.2 74 531-604 23-102 (147)
194 KOG0239 Kinesin (KAR3 subfamil 27.2 1.3E+03 0.027 28.6 15.8 22 687-708 416-437 (670)
195 PRK10132 hypothetical protein; 27.1 3.3E+02 0.0071 26.1 7.8 45 671-715 22-66 (108)
196 KOG4657 Uncharacterized conser 27.0 8.6E+02 0.019 26.6 16.2 56 573-632 100-155 (246)
197 PF04624 Dec-1: Dec-1 repeat; 26.6 70 0.0015 24.1 2.6 14 607-620 9-22 (27)
198 COG4877 Uncharacterized protei 26.4 64 0.0014 28.3 2.8 33 597-629 12-45 (63)
199 KOG0971 Microtubule-associated 26.4 1.6E+03 0.034 29.4 25.9 40 567-606 390-429 (1243)
200 KOG4466 Component of histone d 26.3 8.1E+02 0.018 27.5 11.5 90 493-597 32-122 (291)
201 KOG0243 Kinesin-like protein [ 26.3 1.6E+03 0.034 29.4 23.5 23 687-709 625-647 (1041)
202 cd02684 MIT_2 MIT: domain cont 26.3 3.3E+02 0.0072 24.1 7.3 40 666-707 2-41 (75)
203 PF09304 Cortex-I_coil: Cortex 25.9 6.2E+02 0.014 24.6 11.1 27 541-567 54-80 (107)
204 PF10174 Cast: RIM-binding pro 25.4 1.4E+03 0.031 28.7 30.3 95 502-596 328-422 (775)
205 KOG0448 Mitofusin 1 GTPase, in 25.4 3.3E+02 0.0071 33.8 9.2 79 663-741 358-436 (749)
206 PHA02940 hypothetical protein; 25.1 3.7E+02 0.008 29.8 8.7 88 547-637 9-96 (315)
207 TIGR00996 Mtu_fam_mce virulenc 25.1 5.1E+02 0.011 27.4 9.7 21 692-712 190-210 (291)
208 PF05837 CENP-H: Centromere pr 24.9 5.3E+02 0.011 24.2 8.7 30 587-616 58-99 (106)
209 smart00503 SynN Syntaxin N-ter 24.6 3.5E+02 0.0075 24.3 7.3 24 662-685 12-35 (117)
210 PF08702 Fib_alpha: Fibrinogen 24.6 7.1E+02 0.015 24.8 13.1 67 528-596 60-127 (146)
211 PF08703 PLC-beta_C: PLC-beta 24.5 6E+02 0.013 26.6 9.8 48 493-540 88-135 (185)
212 PF04568 IATP: Mitochondrial A 24.5 1.2E+02 0.0026 28.8 4.4 15 542-556 69-83 (100)
213 KOG4661 Hsp27-ERE-TATA-binding 24.5 8.4E+02 0.018 30.1 11.9 13 608-620 680-692 (940)
214 KOG2264 Exostosin EXT1L [Signa 24.0 2.8E+02 0.0061 33.8 8.1 62 572-643 99-160 (907)
215 PTZ00421 coronin; Provisional 24.0 1.2E+02 0.0026 35.3 5.2 33 572-605 452-484 (493)
216 PF04576 Zein-binding: Zein-bi 23.9 3.7E+02 0.008 25.6 7.4 50 576-629 2-56 (94)
217 PRK03963 V-type ATP synthase s 23.6 7.5E+02 0.016 24.8 14.6 68 507-580 44-111 (198)
218 PRK10780 periplasmic chaperone 23.5 7.3E+02 0.016 24.6 13.0 31 506-536 46-76 (165)
219 PF00901 Orbi_VP5: Orbivirus o 23.3 1.4E+03 0.029 27.6 13.4 141 447-604 66-207 (508)
220 TIGR01061 parC_Gpos DNA topois 23.0 7.6E+02 0.017 30.6 11.8 57 555-612 410-466 (738)
221 cd07683 F-BAR_srGAP1 The F-BAR 23.0 1E+03 0.023 26.2 14.4 119 487-607 21-147 (253)
222 smart00434 TOP4c DNA Topoisome 22.8 3.8E+02 0.0082 31.1 8.8 45 555-600 398-442 (445)
223 cd08779 Death_PIDD Death Domai 22.7 1E+02 0.0022 27.9 3.4 33 598-630 41-76 (86)
224 KOG4744 Uncharacterized conser 22.5 6.3E+02 0.014 28.5 10.0 94 669-762 178-271 (308)
225 PF13747 DUF4164: Domain of un 22.5 5E+02 0.011 23.9 7.9 56 573-629 15-70 (89)
226 PF10473 CENP-F_leu_zip: Leuci 22.5 8E+02 0.017 24.6 17.0 51 506-560 41-91 (140)
227 cd07652 F-BAR_Rgd1 The F-BAR ( 22.2 9.4E+02 0.02 25.4 14.4 44 586-632 92-135 (234)
228 KOG0964 Structural maintenance 22.2 1.9E+03 0.041 28.9 25.3 128 464-592 665-804 (1200)
229 PHA02592 52 DNA topisomerase I 22.1 5.4E+02 0.012 30.1 9.8 49 555-612 385-433 (439)
230 smart00503 SynN Syntaxin N-ter 22.0 5.8E+02 0.013 22.9 10.8 25 690-714 46-70 (117)
231 PF07851 TMPIT: TMPIT-like pro 22.0 9.2E+02 0.02 27.4 11.3 53 538-596 39-91 (330)
232 PF12072 DUF3552: Domain of un 21.3 9.1E+02 0.02 24.8 19.1 55 539-593 93-147 (201)
233 PF14523 Syntaxin_2: Syntaxin- 21.1 5.9E+02 0.013 22.6 10.9 77 670-746 8-91 (102)
234 KOG0288 WD40 repeat protein Ti 21.0 1.3E+03 0.029 27.3 12.4 18 563-580 104-121 (459)
235 PRK13182 racA polar chromosome 20.8 3.9E+02 0.0084 27.5 7.5 66 508-575 83-148 (175)
236 PF10174 Cast: RIM-binding pro 20.8 1.8E+03 0.038 28.0 23.6 21 487-507 30-50 (775)
237 PF06428 Sec2p: GDP/GTP exchan 20.7 2.3E+02 0.0049 26.9 5.4 60 497-556 2-65 (100)
238 COG1579 Zn-ribbon protein, pos 20.6 1.1E+03 0.024 25.6 19.5 13 535-547 89-101 (239)
239 KOG0982 Centrosomal protein Nu 20.6 1.5E+03 0.032 27.1 21.3 29 579-607 362-390 (502)
240 PF00769 ERM: Ezrin/radixin/mo 20.6 1.1E+03 0.023 25.3 14.9 27 671-697 185-214 (246)
241 cd00187 TOP4c DNA Topoisomeras 20.5 1.1E+03 0.024 27.5 12.0 51 556-607 389-439 (445)
242 COG4942 Membrane-bound metallo 20.5 1.4E+03 0.031 26.8 22.1 62 557-618 169-244 (420)
243 KOG4364 Chromatin assembly fac 20.4 1.8E+03 0.038 27.9 14.0 14 500-513 264-277 (811)
244 COG3879 Uncharacterized protei 20.3 9.5E+02 0.021 26.4 10.6 88 562-649 39-128 (247)
245 PF13945 NST1: Salt tolerance 20.3 2.4E+02 0.0052 29.6 6.0 69 488-561 105-175 (190)
246 KOG0240 Kinesin (SMY1 subfamil 20.0 1.7E+03 0.036 27.5 19.6 24 744-767 571-594 (607)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.92 E-value=1.1e-09 Score=84.86 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=31.4
Q ss_pred CccCCCCCCCCh-HHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHH
Q 004170 320 AFDDITPEDPDF-SSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLV 374 (770)
Q Consensus 320 AF~DV~~sdPyf-~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELA 374 (770)
.|+||+..+|+| .+|+.|++.|||.|+. +++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~~-----------~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGYS-----------DGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS---T-----------TS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccCC-----------CCeECCCCCcCHHHhC
Confidence 599999999955 9999999999999883 2379999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=97.70 E-value=3.7e-05 Score=59.73 Aligned_cols=44 Identities=34% Similarity=0.392 Sum_probs=27.3
Q ss_pred CccccCCcCc-chHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHH
Q 004170 398 GFIDIDKINP-DAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAA 447 (770)
Q Consensus 398 ~F~DadkIs~-~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAA 447 (770)
.|.|+..+++ |+ .+|...+..| ||.+. ..+.|+|++++||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~~~g---i~~G~--~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLYQLG---IISGY--SDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHHHTT---SS-----TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHHHcC---CcccC--CCCeECCCCCcCHHHhC
Confidence 4899999988 77 8886666543 55332 24679999999999997
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.92 E-value=0.32 Score=52.58 Aligned_cols=92 Identities=29% Similarity=0.418 Sum_probs=71.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 542 SEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 621 (770)
Q Consensus 542 ~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A 621 (770)
|-.+.|..||.|+.++-..|...|-++..=+..++.+..+++.-.+.+.+++.++..=.+-+.--|.|-..|..+-+++-
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77888889998888888888887777777777777777777666666666666665555555567899999999999999
Q ss_pred HHHHHHhHHHhhcCcEEE
Q 004170 622 KALEGARDRWERQGIKVV 639 (770)
Q Consensus 622 ~vLeea~~rW~~~gi~v~ 639 (770)
+.||. .+|++++
T Consensus 286 ~~Le~------~~gw~~~ 297 (325)
T PF08317_consen 286 DALEK------LTGWKIV 297 (325)
T ss_pred HHHHH------HHCcEEE
Confidence 99997 4565554
No 4
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=4.7 Score=50.35 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=118.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHH
Q 004170 528 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER---KALS 604 (770)
Q Consensus 528 ~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek---~AL~ 604 (770)
++....+++-+.++.. +......|-+ ...|..=++.+...+.+|.+.+++++.........+.+++..+ +|+.
T Consensus 262 ~e~~ki~re~~~~Dk~---i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~ 337 (1141)
T KOG0018|consen 262 KERGKIRRELQKVDKK---ISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVE 337 (1141)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555555555543 2333333333 4567788889999999999999999999999999998877654 4555
Q ss_pred HHHHhHHHHHHHHHH-HH---HHHHHHhHHHhhcCcEEEEcCCcccccccc-------chhhhcccccchHHHHHhHHHH
Q 004170 605 MARAWAEDEAKRARE-QA---KALEGARDRWERQGIKVVVDKDLREESDAA-------VMWVNAGKQFSVDQTVSRAQSL 673 (770)
Q Consensus 605 m~R~W~EdEA~~~~e-~A---~vLeea~~rW~~~gi~v~vd~~~~~~~~~~-------~~w~~~~~~~~~~~~~~ra~~~ 673 (770)
-++.-.|+|-++.+. +- ..++.+.+-+. .|.+++... .-----.++-.++.+.+|-..|
T Consensus 338 ~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~----------rlk~ea~~~~~~el~~ln~~~r~~~~~ld~~~~~~~el 407 (1141)
T KOG0018|consen 338 GAKEEFEKEIEERSQERGSELNLKDDQVEEYE----------RLKEEACKEALEELEVLNRNMRSDQDTLDHELERRAEL 407 (1141)
T ss_pred HHHHHHHHHHHHHHhhccccCCcchHHHHHHH----------HHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555433221 11 01111111111 122222211 1111124555667777777777
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhhhhH
Q 004170 674 VDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR---------------------AAELKDATILKAKGSV 732 (770)
Q Consensus 674 ~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 732 (770)
-.+++.+...| .++..-++.+..+|.++...+.+.......- .+.+.|+++-...++=
T Consensus 408 E~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR 486 (1141)
T KOG0018|consen 408 EARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSR 486 (1141)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHH
Confidence 77777777666 3444444444444444444333333222111 1344455444444444
Q ss_pred HHHHHhHHHHhhhhcccch-hhhhhhhhh
Q 004170 733 QELQQSTAEFRSNLTEGAK-RVAGDCREG 760 (770)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~k-~~~~~c~~~ 760 (770)
+...+.+.+.=-...-|.+ ||.+.|+--
T Consensus 487 ~~~~~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 487 RSRKQEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHHHHHHHHHhCCCccchhhhccccc
Confidence 4444555555555566777 899999753
No 5
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.55 E-value=1.4 Score=48.22 Aligned_cols=125 Identities=17% Similarity=0.261 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 004170 509 EKMAEEARQELERLRAEREVDKIALMKERAAI-ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ 587 (770)
Q Consensus 509 ek~~~~~~~ele~~r~~re~e~~~llKeraa~-e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~ 587 (770)
+.++..++.+|.+....=..+...|.+....| .|--..|..||.++.++.+.+...+-++..=++.++++...++...+
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444344444444444444 46677888888888888888877777776666677777777766666
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEE
Q 004170 588 EIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVV 639 (770)
Q Consensus 588 ~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~ 639 (770)
...+++.++-.-.+=+-.-|.|-..|+.+=+++-+.||. -+|++++
T Consensus 247 ~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~------l~g~~~~ 292 (312)
T smart00787 247 KKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS------LTGWKIT 292 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------HhCCeeE
Confidence 666666655544444555689999999999999999987 4565543
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.89 E-value=11 Score=45.53 Aligned_cols=91 Identities=29% Similarity=0.280 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----------------------
Q 004170 545 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKA---------------------- 602 (770)
Q Consensus 545 ~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~A---------------------- 602 (770)
..|..||.|.|++--+|.+-.-.--.||+.|+-|.+.+..++..-..+...|..||+|
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~ 539 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQEC 539 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchh
Confidence 3455555555555545554444445566666666666666666666666666666655
Q ss_pred ---HHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcC
Q 004170 603 ---LSMARAWAEDEAKRAREQAKALEGARDRWERQG 635 (770)
Q Consensus 603 ---L~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~g 635 (770)
+..-|.=.|.|.++-|..-+..||.-+.|+..+
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567777777777777888888887765
No 7
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.73 E-value=16 Score=46.56 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhHHHHHHHH----------HHhhhc--ceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--
Q 004170 539 AIESEMEILSKLRREVEEQL----------ESLMSN--KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS-- 604 (770)
Q Consensus 539 a~e~e~~~L~~lr~evde~~----------q~l~s~--~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~-- 604 (770)
.|+.-+++|.+|-.+|-+.| +.||.+ .+++..+-+.|+.|-.+|...-..|.++..+|-.=|--+.
T Consensus 1465 q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1465 QMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 45666667777766665433 334432 4566677777888887777776666665555433222111
Q ss_pred --------HHHHhHHHHHHHHHHHHHHHHHHhHH
Q 004170 605 --------MARAWAEDEAKRAREQAKALEGARDR 630 (770)
Q Consensus 605 --------m~R~W~EdEA~~~~e~A~vLeea~~r 630 (770)
-+|+||||+-..+..--.+||+|-+-
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~A 1578 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVA 1578 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 24677777776666666677776544
No 8
>PRK00106 hypothetical protein; Provisional
Probab=91.69 E-value=20 Score=42.20 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHH
Q 004170 540 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARL-----------QYELEVERKALSMARA 608 (770)
Q Consensus 540 ~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~-----------k~~LE~Ek~AL~m~R~ 608 (770)
++...+.|.+...+++.+.+.|...+-++-.-+..++++..+...+.+.++.+ +-+-|+..++-.++|.
T Consensus 113 LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~ 192 (535)
T PRK00106 113 LDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATRIRE 192 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444343333444444444444444443322 2233455556666665
Q ss_pred hHHHHHHH-HHHH-HHHHHHHhHHHh
Q 004170 609 WAEDEAKR-AREQ-AKALEGARDRWE 632 (770)
Q Consensus 609 W~EdEA~~-~~e~-A~vLeea~~rW~ 632 (770)
. |+||+. +... -++|-.|-+|..
T Consensus 193 ~-e~~a~~~a~~~a~~ii~~aiqr~a 217 (535)
T PRK00106 193 A-EREVKDRSDKMAKDLLAQAMQRLA 217 (535)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 334433 2222 346777777743
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=30 Score=42.66 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004170 545 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEV 598 (770)
Q Consensus 545 ~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~ 598 (770)
+.|.-|........++|.--|+.|..-|..|+.+.+.++...-+|.+||..|.-
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE 497 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE 497 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666667777777777777777777666666666665543
No 10
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.05 E-value=21 Score=36.89 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=15.6
Q ss_pred cccchhhhcccccch-HHHHHhHHHHHHHHHHh
Q 004170 649 DAAVMWVNAGKQFSV-DQTVSRAQSLVDKLKAM 680 (770)
Q Consensus 649 ~~~~~w~~~~~~~~~-~~~~~ra~~~~~k~~~~ 680 (770)
..|+.+.|...-... +..++-|=..+-.|=.|
T Consensus 178 I~~~~lp~~~~~~~~~~~~isaALgyvahlv~l 210 (302)
T PF10186_consen 178 ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSL 210 (302)
T ss_pred ecCcccCCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 356666665433332 34556664444444333
No 11
>PRK00106 hypothetical protein; Provisional
Probab=90.89 E-value=22 Score=41.95 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=8.1
Q ss_pred cCcEEEEcCCc
Q 004170 634 QGIKVVVDKDL 644 (770)
Q Consensus 634 ~gi~v~vd~~~ 644 (770)
-|+.++||+.-
T Consensus 255 tGvdliiddtp 265 (535)
T PRK00106 255 TGIDVIIDDTP 265 (535)
T ss_pred hCceEEEcCCC
Confidence 48888888653
No 12
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.15 E-value=41 Score=38.78 Aligned_cols=109 Identities=22% Similarity=0.172 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHH
Q 004170 507 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENEN 586 (770)
Q Consensus 507 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~ 586 (770)
..-.+|.+...++.+.-..-.+....|-..|+.|+.|++.|..+..|..++.++|.....| =+..+.+|.++++.++
T Consensus 147 R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E---~kk~~~~l~~~l~~~q 223 (420)
T COG4942 147 RLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKKTLAQLNSELSADQ 223 (420)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3455677778888888888888888999999999999999999999999999988765432 2445566777776666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004170 587 QEIARLQYELEVERKALSMARAWAEDEAKRAREQAK 622 (770)
Q Consensus 587 ~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~ 622 (770)
+.+..|+ ....+|.-.=+=+|.+|.++||.+.
T Consensus 224 ~~l~eL~----~~~~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 224 KKLEELR----ANESRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544 3333444333334434444444433
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.64 E-value=40 Score=41.01 Aligned_cols=136 Identities=21% Similarity=0.289 Sum_probs=70.9
Q ss_pred hhHHhhhHHHHHHHHH-hHHHH-HHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 004170 458 AVNEELQRIEAESAAE-NAVSE-HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLR---AEREVDKIA 532 (770)
Q Consensus 458 ~v~eEl~r~EAe~~A~-~Av~a-~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r---~~re~e~~~ 532 (770)
-...|+.++.+|-.+. ..... ++.+..... ..+....++..-|..-+.++.-+.++..-....| ..=|+-+.+
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~--~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN--NERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777774332 22222 122111111 1134455555555556666655555544444444 234556677
Q ss_pred HhhhhhHHHHHHHHHHHhHHHHHHHHHHh----hhcceehhhHHHH---------HHHHHHHHHHHHHHHHHhHHHH
Q 004170 533 LMKERAAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKER---------INMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 533 llKeraa~e~e~~~L~~lr~evde~~q~l----~s~~~~~~~E~~~---------l~kl~~~~e~~~~~~~~~k~~L 596 (770)
..+-|+.+|.|-....+=|.+-++...+= .+.|. -..|..| +.+|+.|+..+.+.+..++.++
T Consensus 500 E~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 500 ERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888777776666655544332 11122 2233222 6667777777766666655544
No 14
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.42 E-value=53 Score=38.99 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=73.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
..+...++..++++..++++++.+....-..++.+|..++.++..|..-+.+....+-.++++..=...=..-|+.++..
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q 308 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ 308 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHH
Confidence 34566777777888888888888888888899999999999999999999999999999999998777777888888888
Q ss_pred HHHHHHHH
Q 004170 582 AENENQEI 589 (770)
Q Consensus 582 ~e~~~~~~ 589 (770)
++.+++..
T Consensus 309 ~~~e~~~~ 316 (650)
T TIGR03185 309 LQKEEQSQ 316 (650)
T ss_pred HHHHHHHH
Confidence 88776433
No 15
>PRK12704 phosphodiesterase; Provisional
Probab=89.21 E-value=41 Score=39.41 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HHH-HHHHHHHhHHHh
Q 004170 594 YELEVERKALSMARAWAEDEAKRA-REQ-AKALEGARDRWE 632 (770)
Q Consensus 594 ~~LE~Ek~AL~m~R~W~EdEA~~~-~e~-A~vLeea~~rW~ 632 (770)
-+-|+.+++-.+.|. .|+||+.. ... -++|-.|-+|..
T Consensus 163 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~i~~~a~qr~a 202 (520)
T PRK12704 163 VEEEARHEAAVLIKE-IEEEAKEEADKKAKEILAQAIQRCA 202 (520)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556667777776 34455432 222 346777878743
No 16
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.95 E-value=59 Score=38.92 Aligned_cols=93 Identities=28% Similarity=0.377 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhH-HHHHHHHHHHHHH
Q 004170 506 DVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYE-KERINMLRKEAEN 584 (770)
Q Consensus 506 ~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E-~~~l~kl~~~~e~ 584 (770)
.++++.++++..+++.++.+.+.....+ ..|+.+.+.......+.++++. |...=+++..+ ..+|.||..-++.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~----~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSL----KQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3455555555555555555544443332 2233333333333334444433 22222233333 4788899998888
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 004170 585 ENQEIARLQYELEVERKAL 603 (770)
Q Consensus 585 ~~~~~~~~k~~LE~Ek~AL 603 (770)
..+.+..|+...|.=|.-|
T Consensus 406 s~~rl~~L~~qWe~~R~pL 424 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPL 424 (594)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 8888888877766544444
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.50 E-value=61 Score=38.55 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=5.2
Q ss_pred cccCCCCC
Q 004170 434 LFQPDKPV 441 (770)
Q Consensus 434 ~FqPnkPV 441 (770)
.|+|.+|+
T Consensus 109 qf~~~~p~ 116 (546)
T PF07888_consen 109 QFRAPKPL 116 (546)
T ss_pred ccCCCCcc
Confidence 47776664
No 18
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.43 E-value=4.5 Score=49.09 Aligned_cols=64 Identities=22% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHH
Q 004170 510 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE 573 (770)
Q Consensus 510 k~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~ 573 (770)
...+.|+.-+...+.+-++-+..|-.+|..++.+++.+.+++.|++++.++|-.+.-+.-.+++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666677777777777777777777777777766655554444433
No 19
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=88.31 E-value=70 Score=39.00 Aligned_cols=8 Identities=50% Similarity=0.875 Sum_probs=3.9
Q ss_pred CCcccccc
Q 004170 66 GSDSILDA 73 (770)
Q Consensus 66 ~~~~~~~~ 73 (770)
|--+||||
T Consensus 35 GKS~ll~a 42 (1179)
T TIGR02168 35 GKSNIVDA 42 (1179)
T ss_pred ChhHHHHH
Confidence 44455544
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.94 E-value=31 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004170 689 KEIINTIIHKILLFISNL 706 (770)
Q Consensus 689 ~~~~~~~~~~i~~~i~~~ 706 (770)
.+.|..-+-.+-+|+..|
T Consensus 194 ~~~isaALgyvahlv~ll 211 (302)
T PF10186_consen 194 DEEISAALGYVAHLVSLL 211 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 21
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.31 E-value=64 Score=37.80 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHH-HHHHHHHhHHHh
Q 004170 593 QYELEVERKALSMARAWAEDEAKR-AREQ-AKALEGARDRWE 632 (770)
Q Consensus 593 k~~LE~Ek~AL~m~R~W~EdEA~~-~~e~-A~vLeea~~rW~ 632 (770)
+-+-++..++-.|.|-. |+||+. +... -++|-.|-+|..
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~a~~i~~~aiqr~a 196 (514)
T TIGR03319 156 EVEEEARHEAAKLIKEI-EEEAKEEADKKAKEILATAIQRYA 196 (514)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556666777654 333432 2222 356778888743
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=86.95 E-value=98 Score=39.45 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=17.2
Q ss_pred CCcCCCCCccHHHHHHHHHHh
Q 004170 275 ADVKPGDLCIRREYARWLVSA 295 (770)
Q Consensus 275 ~~F~Pn~pITRaEFArwLVRA 295 (770)
.+|-=+..|+..++..+|..+
T Consensus 111 ~Y~INg~~~~~~dI~~l~~~~ 131 (1163)
T COG1196 111 EYYINGEKVRLKDIQDLLADS 131 (1163)
T ss_pred EEEECCcEeeHHHHHHHHHhc
Confidence 467788999999998888665
No 23
>PRK11637 AmiB activator; Provisional
Probab=86.24 E-value=17 Score=40.82 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 004170 516 RQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 561 (770)
Q Consensus 516 ~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l 561 (770)
+.+|+..+.+-++.+..+-..++.++.++..|...+.|-...++.|
T Consensus 179 ~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L 224 (428)
T PRK11637 179 REELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGL 224 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444
No 24
>PRK12704 phosphodiesterase; Provisional
Probab=86.15 E-value=62 Score=37.98 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHhhcCcEEEEcCC
Q 004170 620 QAKALEGARDRWERQGIKVVVDKD 643 (770)
Q Consensus 620 ~A~vLeea~~rW~~~gi~v~vd~~ 643 (770)
.=|+||.+ -|+.|+||+.
T Consensus 232 nir~~e~~------tgvd~iiddt 249 (520)
T PRK12704 232 NIRALETL------TGVDLIIDDT 249 (520)
T ss_pred hHHHHHHH------hCCeEEEcCC
Confidence 34556654 4999999876
No 25
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.79 E-value=42 Score=35.58 Aligned_cols=101 Identities=27% Similarity=0.307 Sum_probs=53.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhh-hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHH
Q 004170 500 MEREKIDVVEKMAEEARQELERLRA--EREVDKIALMKE-RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERIN 576 (770)
Q Consensus 500 ~eR~~~~~vek~~~~~~~ele~~r~--~re~e~~~llKe-raa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~ 576 (770)
+||++.+-.++|. ....+..+-+. .+-.+.+.+|-+ +--.+.+.+.|-.-+.+.+++.++|......-..|+..|.
T Consensus 3 aEr~k~Ele~rL~-q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 3 AEREKQELEERLR-QMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555444443 22222222222 233445555544 4456788999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 004170 577 MLRKEAENENQEIARLQYELEVERK 601 (770)
Q Consensus 577 kl~~~~e~~~~~~~~~k~~LE~Ek~ 601 (770)
.-..+++.+...+.......+.|.+
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666555555544444443
No 26
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=85.60 E-value=64 Score=37.82 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=12.5
Q ss_pred HHHHHHHHhHHHhhcCcEEEEcCC
Q 004170 620 QAKALEGARDRWERQGIKVVVDKD 643 (770)
Q Consensus 620 ~A~vLeea~~rW~~~gi~v~vd~~ 643 (770)
.=|+||.+ -|+.|.||+.
T Consensus 226 nir~~e~~------tgvd~iiddt 243 (514)
T TIGR03319 226 NIRALETL------TGVDLIIDDT 243 (514)
T ss_pred hHHHHHHH------hCceEEEcCC
Confidence 34556654 4999999876
No 27
>PLN03188 kinesin-12 family protein; Provisional
Probab=83.49 E-value=23 Score=45.50 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhhhhhccchhhhHH---HhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhhhh
Q 004170 475 AVSEHSALVAEVEKEINESFEKELSME---REKIDVVEKMAEE-------------ARQELERLRAEREVDKIALMKERA 538 (770)
Q Consensus 475 Av~a~~~l~~~~~gdi~~~F~~~~~~e---R~~~~~vek~~~~-------------~~~ele~~r~~re~e~~~llKera 538 (770)
|+-.|..|+++- -|++..+-.-+.+- ++=|.+|-|-+.. .-.||--||.+||||..-|.+|--
T Consensus 1105 am~ghar~~e~y-a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk 1183 (1320)
T PLN03188 1105 AMEGHARMLEQY-ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENK 1183 (1320)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455577777775 23333333333333 3556666665543 347999999999999988887754
Q ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHhhhcceeh-hhHHHHHHHHHHHHHHHH-HHHHHhHHHH
Q 004170 539 -----------AIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENEN-QEIARLQYEL 596 (770)
Q Consensus 539 -----------a~e~e~~~L~~lr~evde~~q~l~s~~~~~-~~E~~~l~kl~~~~e~~~-~~~~~~k~~L 596 (770)
||..-=+||.+||+= |.--.++-+|... -+|-+++-|...++..|| .+|+-++-.|
T Consensus 1184 ~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1184 SLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556899999863 3344566666543 355666666666777788 7888887776
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.51 E-value=1.6e+02 Score=37.88 Aligned_cols=185 Identities=21% Similarity=0.260 Sum_probs=93.9
Q ss_pred hhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHH---HHHHHHhhhcc
Q 004170 489 EINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREV---EEQLESLMSNK 565 (770)
Q Consensus 489 di~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~ev---de~~q~l~s~~ 565 (770)
+.++.|......-..++..+.+..+.+..+.+..+.+-+++...=|+++-.=.. .|..|+.++ +..++.....+
T Consensus 718 e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~---~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPE---RIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444455555555666655555555555555555544444422111 222222222 23333333333
Q ss_pred eehh-hHH-------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 004170 566 VEIS-YEK-------------ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRW 631 (770)
Q Consensus 566 ~~~~-~E~-------------~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW 631 (770)
-.|. |++ .+..+|..++..-.+++.+++..|+.-++.+.-.|.=.+.+.+...++..-|++-.++=
T Consensus 795 ~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l 874 (1201)
T PF12128_consen 795 AEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRL 874 (1201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 111 12333444444445555555666666666666666666666666666666666655543
Q ss_pred hhcCcEEEEcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcc
Q 004170 632 ERQGIKVVVDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVS 685 (770)
Q Consensus 632 ~~~gi~v~vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~ 685 (770)
+....++ .++ ...|-...-..++.+.+...++++..++.+..+++
T Consensus 875 ~~~~~~l---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 919 (1201)
T PF12128_consen 875 RDLLEKL---AEL------SEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELK 919 (1201)
T ss_pred HHHHhhh---hhc------CCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 111 12222333337788888888888888877777766
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.85 E-value=1.7e+02 Score=37.89 Aligned_cols=106 Identities=23% Similarity=0.225 Sum_probs=57.7
Q ss_pred HHHHHhh-hhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHH-----------HHHHHHHHHHHHHHHHHHhHHHH
Q 004170 529 DKIALMK-ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKE-----------RINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 529 e~~~llK-eraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~-----------~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
+++.++| .+-..-.+.+-|..-.-.+.|.|.++.+..-+...|.+ ..++.+.+++.-+.++.+|+-.+
T Consensus 377 e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~ 456 (1293)
T KOG0996|consen 377 ERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELL 456 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHH
Confidence 3334444 33333334444444444455555555444333332222 23344455555666677777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 004170 597 EVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQ 634 (770)
Q Consensus 597 E~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~ 634 (770)
+.|.+-|.=-+.=...+...-++--.-+|+.--.|..+
T Consensus 457 ~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 457 EKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777777666667777766666666666666666543
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.80 E-value=79 Score=34.61 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=16.4
Q ss_pred hhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004170 488 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRA 524 (770)
Q Consensus 488 gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~ 524 (770)
++| --|+- .....-...++..++....+.+.+..
T Consensus 137 ~~W-YeWR~--~ll~gl~~~L~~~~~~L~~D~~~L~~ 170 (325)
T PF08317_consen 137 KMW-YEWRM--QLLEGLKEGLEENLELLQEDYAKLDK 170 (325)
T ss_pred HHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 34552 23344445555555555555555544
No 31
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=80.96 E-value=33 Score=37.79 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhh
Q 004170 577 MLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVN 656 (770)
Q Consensus 577 kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~~ 656 (770)
.|...+-..+.++.+...+||..|.++..++.=..+=-...++|-..| ++|||-++=| .-..+.+.++.|.-
T Consensus 123 e~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli-------~khGlVlv~~-~~ngd~~~~~~~~~ 194 (302)
T PF09738_consen 123 ELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELI-------EKHGLVLVPD-ATNGDTSDEPNNVG 194 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCeeeCCC-CCCCccccCccccC
Confidence 333333333344445556677777777777654332222233444444 5799988766 55556666666665
Q ss_pred cccccch
Q 004170 657 AGKQFSV 663 (770)
Q Consensus 657 ~~~~~~~ 663 (770)
.++..-|
T Consensus 195 ~~~~~~v 201 (302)
T PF09738_consen 195 HPKRALV 201 (302)
T ss_pred CCccccc
Confidence 5554444
No 32
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.27 E-value=66 Score=32.03 Aligned_cols=85 Identities=24% Similarity=0.324 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHH
Q 004170 503 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIES---EMEILSKLRREVEEQLESLMSNKVEISYEKERINMLR 579 (770)
Q Consensus 503 ~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~---e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~ 579 (770)
.+..-++..++....||+...++++.-....-..|+.++| |.+++..=+.....-|.. ++-|++.|.+.+
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~-------l~sEk~~L~k~l 89 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDT-------LRSEKENLDKEL 89 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3333344444444455554444444333333333333333 333322222223333333 344555555544
Q ss_pred HHHHHHHHHHHHhHH
Q 004170 580 KEAENENQEIARLQY 594 (770)
Q Consensus 580 ~~~e~~~~~~~~~k~ 594 (770)
.+.+.+-.++.-..+
T Consensus 90 q~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 90 QKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHhH
Confidence 444444444433333
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.79 E-value=1.6e+02 Score=36.24 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.1
Q ss_pred CcCCCCCccHHHHHHHHHH
Q 004170 276 DVKPGDLCIRREYARWLVS 294 (770)
Q Consensus 276 ~F~Pn~pITRaEFArwLVR 294 (770)
+|--+.+||+.++...|-.
T Consensus 110 ~~~n~~~~~~~~~~~~l~~ 128 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDFLAA 128 (1164)
T ss_pred EEECCccccHHHHHHHHHH
Confidence 3445667888887666544
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=79.39 E-value=96 Score=33.40 Aligned_cols=59 Identities=27% Similarity=0.286 Sum_probs=26.8
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 605 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m 605 (770)
+..|..|++-.=+++.+-.-++..=.+++++|+.+++..++.+.+++-.+...++++.-
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333444555555555555555555555555554443
No 35
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.11 E-value=15 Score=44.81 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 004170 510 KMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 568 (770)
Q Consensus 510 k~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~ 568 (770)
.+.+.|+.-+.....+-++-...|-++|..++.+++.+..++.|++++.+.|-.++-++
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555556666666666666666666666666666655554444
No 36
>PTZ00121 MAEBL; Provisional
Probab=78.90 E-value=1.8e+02 Score=38.73 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHccccchhhHHhhhHHHHHHHHHhH
Q 004170 443 NAQAAVALAIGEASDAVNEELQRIEAESAAENA 475 (770)
Q Consensus 443 RAEAAAaL~sG~~~e~v~eEl~r~EAe~~A~~A 475 (770)
|+.-|.--..|...++-.+|-.|.|+++.+..+
T Consensus 1088 ~~~~~~~~~~~~~e~~r~~et~r~ee~r~~ee~ 1120 (2084)
T PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEA 1120 (2084)
T ss_pred cchhhhHHHhhhHHHhhhhhhhhhHHHHHHHHH
Confidence 444444445666666666666666666655554
No 37
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=77.91 E-value=1.5e+02 Score=34.86 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH--HHhhhhHHHHHHh-HHHHhhhhccc
Q 004170 699 ILLFISNLKKWASKASMRAAELKDATI--LKAKGSVQELQQS-TAEFRSNLTEG 749 (770)
Q Consensus 699 i~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 749 (770)
+..-|..|.+.-.++.+.|..|-.|-. +|+.|.|-|+|.. +.+. +++.+|
T Consensus 170 L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~-sGL~~~ 222 (475)
T PRK10361 170 LAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEA-SGLREG 222 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHH-hCCCcC
Confidence 334455555666666777777766653 4788999888753 4443 355444
No 38
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.78 E-value=2.3e+02 Score=36.88 Aligned_cols=79 Identities=28% Similarity=0.312 Sum_probs=34.2
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004170 544 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKA 623 (770)
Q Consensus 544 ~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~v 623 (770)
.+++..++++.|+++..|--+..-|..|...+ ++++.-....+.++++++.+=..=|.|+-.-.++.-++.-+--.-
T Consensus 453 ~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~---ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~ 529 (1293)
T KOG0996|consen 453 EELLEKEERELDEILDSLKQETEGIREEIEKL---EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK 529 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444443332 233333334444444444444444444444444444444333333
Q ss_pred HH
Q 004170 624 LE 625 (770)
Q Consensus 624 Le 625 (770)
|+
T Consensus 530 L~ 531 (1293)
T KOG0996|consen 530 LL 531 (1293)
T ss_pred HH
Confidence 33
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.69 E-value=53 Score=41.70 Aligned_cols=123 Identities=26% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004170 467 EAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEI 546 (770)
Q Consensus 467 EAe~~A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~ 546 (770)
+|-.-.+.+...++++.++ .+++..+.+.....=+.....+...=++.-.++..++.+++.++.-|=+|...++. +
T Consensus 341 ~~r~~~~~~~re~~~~~~~-~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~ 416 (1074)
T KOG0250|consen 341 EARKDLDDLRREVNDLKEE-IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---Q 416 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 593 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k 593 (770)
+..|+.|.++..+.+....-+-...+..+-.|++.+++....|.+++
T Consensus 417 ~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 417 INSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.41 E-value=47 Score=40.67 Aligned_cols=49 Identities=29% Similarity=0.363 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHhHHHHHHHHHHh
Q 004170 513 EEARQELERLRAEREVDKIALMKERAAIESEM-EILSKLRREVEEQLESL 561 (770)
Q Consensus 513 ~~~~~ele~~r~~re~e~~~llKeraa~e~e~-~~L~~lr~evde~~q~l 561 (770)
++.+.++++++.+.++.+..|-+++..++.++ +++..+++|..++++..
T Consensus 528 e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a 577 (771)
T TIGR01069 528 EQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333322 23344455544444443
No 41
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.22 E-value=1.4e+02 Score=36.87 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=69.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH---HHhhhcceehhhHHHHHHHH
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL---ESLMSNKVEISYEKERINML 578 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~---q~l~s~~~~~~~E~~~l~kl 578 (770)
..++.++|.-+-.++++|.|.++|.+.=....-.-+.+.++--..-.+||.|+.|.= +||+.+-.++-.|--.|||.
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356777777777888888888887775544433334444443344456788887764 46777777777777777776
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Q 004170 579 RKEAENENQEIARLQYELEVERKALSMARAWAEDEAK 615 (770)
Q Consensus 579 ~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~ 615 (770)
-+-+-.-+=+..-+|-++..=.+=..++++=+||-++
T Consensus 113 vs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 113 VSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444444444454444444444555555554443
No 42
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.21 E-value=93 Score=38.39 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=48.7
Q ss_pred hccchhh-hHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HhhhhhHH-----------------------
Q 004170 492 ESFEKEL-SMEREKIDVVEKMAE----EARQELERLRAEREVDKIA---LMKERAAI----------------------- 540 (770)
Q Consensus 492 ~~F~~~~-~~eR~~~~~vek~~~----~~~~ele~~r~~re~e~~~---llKeraa~----------------------- 540 (770)
+.|+-++ .+||....++|++-+ +.|.|-.|+|.|+|++... .||.+--.
T Consensus 837 r~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq 916 (1187)
T KOG0579|consen 837 RTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQ 916 (1187)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444443 578888888887755 4566777889999988753 34433222
Q ss_pred ---HH---HHHHHHHhHHHHHHHHHHhhhcc
Q 004170 541 ---ES---EMEILSKLRREVEEQLESLMSNK 565 (770)
Q Consensus 541 ---e~---e~~~L~~lr~evde~~q~l~s~~ 565 (770)
++ +++.+.+++.++|.||++++...
T Consensus 917 ~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~ 947 (1187)
T KOG0579|consen 917 IEIEHQLKEKDFVMKQQQNLEAMLKRMAEKH 947 (1187)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23567788888888888887654
No 43
>PTZ00121 MAEBL; Provisional
Probab=76.03 E-value=2.3e+02 Score=37.92 Aligned_cols=51 Identities=27% Similarity=0.223 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH--hhhhhhccchhhhHHHhhHHHHHHHHHHHH
Q 004170 466 IEAESAAENAVSEHSALVAEV--EKEINESFEKELSMEREKIDVVEKMAEEAR 516 (770)
Q Consensus 466 ~EAe~~A~~Av~a~~~l~~~~--~gdi~~~F~~~~~~eR~~~~~vek~~~~~~ 516 (770)
.|+...++.|.....+.-++. +-+--+.++.....|+++..+-.+.+++++
T Consensus 1136 ae~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~EEaRraEE~R 1188 (2084)
T PTZ00121 1136 AEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVR 1188 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555433322222 111223444444555555444445555544
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=75.08 E-value=1.6e+02 Score=33.67 Aligned_cols=17 Identities=6% Similarity=0.262 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhHHHh
Q 004170 616 RAREQAKALEGARDRWE 632 (770)
Q Consensus 616 ~~~e~A~vLeea~~rW~ 632 (770)
+++..-.-++....-|+
T Consensus 266 ~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 266 KIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33333444444444454
No 45
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=75.03 E-value=87 Score=38.32 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHhhcCcEEE
Q 004170 618 REQAKALEGARDRWERQGIKVV 639 (770)
Q Consensus 618 ~e~A~vLeea~~rW~~~gi~v~ 639 (770)
+.-+.-|+++..+|.+++.++.
T Consensus 649 ~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 649 QDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556777888887766544
No 46
>PRK09039 hypothetical protein; Validated
Probab=74.62 E-value=1.5e+02 Score=33.08 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=58.9
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 004170 498 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 577 (770)
Q Consensus 498 ~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~k 577 (770)
+.++|.+...++..+.+.+.+++-.+..|+. +...+.+.+. ....+...+...-+.|...+.+|...+-.++.
T Consensus 69 L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~-Le~~~~~~~~------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~ 141 (343)
T PRK09039 69 LSLERQGNQDLQDSVANLRASLSAAEAERSR-LQALLAELAG------AGAAAEGRAGELAQELDSEKQVSARALAQVEL 141 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh------hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3456666666666666666655544444331 1111111111 11122222333346777778888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004170 578 LRKEAENENQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 578 l~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
|+.+++.=...+..++..|.+=++-..-++
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887778888887776555544443
No 47
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=73.36 E-value=2.7e+02 Score=35.63 Aligned_cols=16 Identities=6% Similarity=0.368 Sum_probs=9.8
Q ss_pred ccCCCCcCcHHHHHHH
Q 004170 361 FFLPESPLSRQDLVSW 376 (770)
Q Consensus 361 tF~PD~PITRQELAaw 376 (770)
||==+..++..|....
T Consensus 112 Y~INg~~~~~~dI~~l 127 (1163)
T COG1196 112 YYINGEKVRLKDIQDL 127 (1163)
T ss_pred EEECCcEeeHHHHHHH
Confidence 5555666666666654
No 48
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=73.33 E-value=87 Score=33.33 Aligned_cols=46 Identities=28% Similarity=0.173 Sum_probs=31.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004170 499 SMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 545 (770)
Q Consensus 499 ~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~ 545 (770)
..=|.|..++||+..+.+.|++.++.+. +-+.+|-||+..+..|+-
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3348888999999988888888877665 555555555555555443
No 49
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.02 E-value=1.9e+02 Score=33.71 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004170 512 AEEARQELERLRAEREVDKIALMKERA 538 (770)
Q Consensus 512 ~~~~~~ele~~r~~re~e~~~llKera 538 (770)
+.....+|..++++.++....-|+++.
T Consensus 260 i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 260 IDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555544
No 50
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.89 E-value=36 Score=35.48 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=22.1
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004170 499 SMEREKIDVVEKMAEEARQELERLRAE 525 (770)
Q Consensus 499 ~~eR~~~~~vek~~~~~~~ele~~r~~ 525 (770)
+.-|.+..++|+-+++++.+|++.+.+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456788889999999999999887755
No 51
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=72.77 E-value=47 Score=33.05 Aligned_cols=79 Identities=28% Similarity=0.377 Sum_probs=57.7
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLee 626 (770)
|..|..+..+.++.+-.+-..--.=.+.|+-+..+++.|-+.+..+--.||++.+|+ ..|++|-++|++.++.
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~-------k~E~krL~~rkk~~e~ 75 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAI-------KAEIKRLQERKKSIEN 75 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344555555555444343222112246788889999999999999999999988764 6899999999999999
Q ss_pred HhHHHh
Q 004170 627 ARDRWE 632 (770)
Q Consensus 627 a~~rW~ 632 (770)
-..|++
T Consensus 76 ~~~~Lk 81 (162)
T PF05565_consen 76 RIDRLK 81 (162)
T ss_pred HHHHHH
Confidence 888877
No 52
>PLN03188 kinesin-12 family protein; Provisional
Probab=72.68 E-value=3.1e+02 Score=36.01 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchh
Q 004170 577 MLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA--KRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMW 654 (770)
Q Consensus 577 kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA--~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w 654 (770)
.|+-|+|.-..-..+++.||+.||+.---| +|| +.++=|||.||.=-+==++|
T Consensus 1069 elr~eles~r~l~Ekl~~EL~~eK~c~eel-----~~a~q~am~ghar~~e~ya~l~ek~-------------------- 1123 (1320)
T PLN03188 1069 ELRTELDASRALAEKQKHELDTEKRCAEEL-----KEAMQMAMEGHARMLEQYADLEEKH-------------------- 1123 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 567778887777788999999998642222 111 12455777777633222222
Q ss_pred hhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 004170 655 VNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 708 (770)
Q Consensus 655 ~~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 708 (770)
..+-.--.|-+.=|+-.|.-|++...|-++ .+||.-+--=||.||-
T Consensus 1124 ------~~ll~~hr~i~egi~dvkkaaakag~kg~~--~~f~~alaae~s~l~~ 1169 (1320)
T PLN03188 1124 ------IQLLARHRRIQEGIDDVKKAAARAGVRGAE--SKFINALAAEISALKV 1169 (1320)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHH
Confidence 122222233366677777777777766666 6777777777777763
No 53
>PRK12705 hypothetical protein; Provisional
Probab=72.56 E-value=2e+02 Score=34.03 Aligned_cols=14 Identities=14% Similarity=0.461 Sum_probs=9.5
Q ss_pred hcCcEEEEcCCccc
Q 004170 633 RQGIKVVVDKDLRE 646 (770)
Q Consensus 633 ~~gi~v~vd~~~~~ 646 (770)
..|+.|+||+.-..
T Consensus 227 ~tGvdliiddtp~~ 240 (508)
T PRK12705 227 LTGVDLIIDDTPEA 240 (508)
T ss_pred hhCCceEecCCccc
Confidence 45888888865443
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.49 E-value=2.7e+02 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHhhhhcc
Q 004170 669 RAQSLVDKLKAMANDVS 685 (770)
Q Consensus 669 ra~~~~~k~~~~~~~~~ 685 (770)
+-+.|-+|++.+..++-
T Consensus 445 eletLn~k~qqls~kl~ 461 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQ 461 (1118)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 34677788888776654
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=72.35 E-value=1.4e+02 Score=31.75 Aligned_cols=121 Identities=21% Similarity=0.336 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHhHHHHHH
Q 004170 480 SALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAER---EVDKIALMKERAAIESEMEILSKLRREVEE 556 (770)
Q Consensus 480 ~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~r---e~e~~~llKeraa~e~e~~~L~~lr~evde 556 (770)
..+..+.+.+....|..++..=+........-+..++.|+.++|..- ..++..|-...++++.+...|- .+.+.
T Consensus 179 e~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le---~~~~~ 255 (312)
T PF00038_consen 179 EEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE---QRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH---HHHHH
Confidence 34444445566666666655555555555555556666666665532 2333344444444444443332 22222
Q ss_pred HHHHhhhcceehhhHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHH
Q 004170 557 QLESLMSNKVEISYEKERINMLRKEAE---NENQEIARLQYELEVERKALSMA 606 (770)
Q Consensus 557 ~~q~l~s~~~~~~~E~~~l~kl~~~~e---~~~~~~~~~k~~LE~Ek~AL~m~ 606 (770)
..+.+-.. |..=...|.+|+.+++ .+.+.+.++|--|+.|..+.+-|
T Consensus 256 ~~~~~~~~---i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 256 EREEYQAE---IAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---hhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22211111 1111233455555554 34588999999999998876543
No 56
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=71.66 E-value=1.1e+02 Score=35.92 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=71.6
Q ss_pred cchhhHHhhhHHH-HHHHHHhHHHHHHHHHHH--------------HhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHH
Q 004170 455 ASDAVNEELQRIE-AESAAENAVSEHSALVAE--------------VEKEINESFEKELSMEREKIDVVEKMAEEARQEL 519 (770)
Q Consensus 455 ~~e~v~eEl~r~E-Ae~~A~~Av~a~~~l~~~--------------~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~el 519 (770)
--+.+.+|..++. ++.+.+....+...|... ....+...|++....=.++...+.-.++++..+|
T Consensus 210 E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l 289 (563)
T TIGR00634 210 EDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATREL 289 (563)
T ss_pred cHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677765 666666655554444210 0111111134333333334444444444444444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004170 520 ERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVE 599 (770)
Q Consensus 520 e~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~E 599 (770)
.+....-+-+-.. -..++.....+.+|++.--..++.|...+-++..|-+.++....+++.-.+++..++..++.=
T Consensus 290 ~~~~~~l~~dp~~----L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 290 QNYLDELEFDPER----LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4433321111111 133555555666666555555555555555555555556666666666666666666655544
Q ss_pred HHHHHHHH
Q 004170 600 RKALSMAR 607 (770)
Q Consensus 600 k~AL~m~R 607 (770)
-+.|+..|
T Consensus 366 a~~Ls~~R 373 (563)
T TIGR00634 366 AVALSLIR 373 (563)
T ss_pred HHHHHHHH
Confidence 55555553
No 57
>PRK12705 hypothetical protein; Provisional
Probab=70.89 E-value=91 Score=36.80 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004170 553 EVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 619 (770)
Q Consensus 553 evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e 619 (770)
.++..-+.|...+-.+...++.|+++..+...+.+.++.+.. -+|-.++-.=+|+|+++.-+
T Consensus 99 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~-----~eak~~l~~~~~~~~~~e~~ 160 (508)
T PRK12705 99 KLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTP-----EQARKLLLKLLDAELEEEKA 160 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555554444444444444332 24666777777887775433
No 58
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.83 E-value=4.1e+02 Score=36.53 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004170 540 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRARE 619 (770)
Q Consensus 540 ~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e 619 (770)
+|.+...|..-=.+++.+...|+..+...+.|-..+.+...+.+.+...+++.++.++.+.+=| +.=.++|.|+...
T Consensus 1243 ~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle~e~r~k~~ 1319 (1930)
T KOG0161|consen 1243 LEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLEEETREKSA 1319 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3333333333334555556667888999999999999999999999999999999999886654 7888999999988
Q ss_pred HHHHHHHHhHH
Q 004170 620 QAKALEGARDR 630 (770)
Q Consensus 620 ~A~vLeea~~r 630 (770)
.+..|-.+.+-
T Consensus 1320 l~~~l~~l~~e 1330 (1930)
T KOG0161|consen 1320 LENALRQLEHE 1330 (1930)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
No 59
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=70.10 E-value=2.7e+02 Score=34.18 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhHHHhhcCcEEE-----EcCCccccccccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHH
Q 004170 616 RAREQAKALEGARDRWERQGIKVV-----VDKDLREESDAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKE 690 (770)
Q Consensus 616 ~~~e~A~vLeea~~rW~~~gi~v~-----vd~~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~ 690 (770)
|-+.--...++...-|.--|++.- |..+|.+..... ...-.++|+.|-..++.+|+.+..+- .+
T Consensus 179 Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~-------~~~is~etl~~L~~~v~~l~~~k~qr----~~ 247 (660)
T KOG4302|consen 179 RLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQ-------SRSISDETLDRLDKMVKKLKEEKKQR----LQ 247 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcc-------cccCCHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 344444455666777888888654 333333332111 15566889999988888888776543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhh
Q 004170 691 IINTIIHKILLFISNLKKWASKASMRA----AELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLT 765 (770)
Q Consensus 691 ~~~~~~~~i~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~k~~ 765 (770)
.+..+..+|+.|-..|.-=.-+..... .|+-+. .+-....|..++.-+.-...-=...-|.++.+||..++.|-
T Consensus 248 kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~-~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~ 325 (660)
T KOG4302|consen 248 KLQDLRTKLLELWNLLDTSDEERQRFVHVTESEATEP-NSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELW 325 (660)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHccccHHHhhcc-ccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466666666666666543222222211 122222 22223344444433333333333445888888888777654
No 60
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=69.83 E-value=24 Score=31.68 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 004170 671 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRA 717 (770)
Q Consensus 671 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 717 (770)
+.|++.+..+...+...+.+.++.+-+++...+..+|+.+.++..++
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555565555555555555555555555555555555444433
No 61
>PRK09039 hypothetical protein; Validated
Probab=69.04 E-value=2e+02 Score=32.14 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=13.7
Q ss_pred ccchhhHHhhhHHHHHHHHHhH
Q 004170 454 EASDAVNEELQRIEAESAAENA 475 (770)
Q Consensus 454 ~~~e~v~eEl~r~EAe~~A~~A 475 (770)
..-.+..+||.++++. |++.+
T Consensus 46 ~~i~~~~~eL~~L~~q-Ia~L~ 66 (343)
T PRK09039 46 REISGKDSALDRLNSQ-IAELA 66 (343)
T ss_pred HHHhhHHHHHHHHHHH-HHHHH
Confidence 3456667778888776 55544
No 62
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.73 E-value=3.6e+02 Score=35.08 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 004170 592 LQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRW 631 (770)
Q Consensus 592 ~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW 631 (770)
++.+++.-.+-|..++.=.++--.....+.+-|.+...++
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555444443333333334444444444
No 63
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=66.60 E-value=50 Score=33.84 Aligned_cols=87 Identities=24% Similarity=0.371 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 004170 508 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ 587 (770)
Q Consensus 508 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~ 587 (770)
+++-..+...+|+.++..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|++|..++..-++
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHH
Confidence 3334444455555555555444 4555544444444443344444444222 1356778888887777777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhHHH
Q 004170 588 EIARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 588 ~~~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
++.+-.-- +-++++|+..
T Consensus 150 ~anrwTDN-------I~~l~~~~~~ 167 (188)
T PF03962_consen 150 AANRWTDN-------IFSLKSYLKK 167 (188)
T ss_pred HHHHHHhh-------HHHHHHHHHH
Confidence 77665433 4467777754
No 64
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.75 E-value=3.4e+02 Score=33.74 Aligned_cols=240 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 004170 505 IDVVEKMAE--EARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 582 (770)
Q Consensus 505 ~~~vek~~~--~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~ 582 (770)
...+++-+. +-..+|..+..+-.+++..+.+.+ ....+....+..+.++.++.|.....++-.-+.+++ ..++
T Consensus 483 l~~l~~~i~~~~~~~~l~~e~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~--~~~l 557 (908)
T COG0419 483 LEELEEELSREKEEAELREEIEELEKELRELEEEL---IELLELEEALKEELEEKLEKLENLLEELEELKEKLQ--LQQL 557 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhcccccc
Q 004170 583 ENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGKQFS 662 (770)
Q Consensus 583 e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~~~~~~~~ 662 (770)
..+.+.+.+...+|....+.+...+ |...+.+..|++.+-+..-...|...=..+--.-... .-.-....
T Consensus 558 ~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~---------~~~~~~~e 627 (908)
T COG0419 558 KEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL---------ELSEAENE 627 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHH
Q ss_pred hHHHHHhHHHHHHHHHHhhh------------hcccchHHHHHHHH-------------------HHHHHHHHHHHHHHH
Q 004170 663 VDQTVSRAQSLVDKLKAMAN------------DVSGKSKEIINTII-------------------HKILLFISNLKKWAS 711 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~------------~~~~~~~~~~~~~~-------------------~~i~~~i~~~~~~~~ 711 (770)
++....+..+.+++++ .. ++..+...+-..+. +.+..-+..+++...
T Consensus 628 ~~~~~~~l~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~ 705 (908)
T COG0419 628 LEEAEEELESELEKLN--LQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE 705 (908)
T ss_pred HHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhh
Q 004170 712 KASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKL 764 (770)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~k~ 764 (770)
.+..+...+. ..+.+...........-.++...- .+...++.+++-+++.
T Consensus 706 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 755 (908)
T COG0419 706 ELLKKLGEIE-QLIEELESRKAELEELKKELEKLE--KALELLEELREKLGKA 755 (908)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHH
No 65
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.95 E-value=4e+02 Score=34.29 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhc
Q 004170 518 ELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSN 564 (770)
Q Consensus 518 ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~ 564 (770)
.+-++|.+-+.+...+...++.+|++...|...++|++.....+.-.
T Consensus 675 ~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~~I~~ 721 (1072)
T KOG0979|consen 675 LLKRERTKLNSELKSYQQRKERIENLVVDLDRQEEEYAASEAKKILD 721 (1072)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556888889999999999999999999887776543
No 66
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.59 E-value=24 Score=39.76 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 004170 519 LERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESL 561 (770)
Q Consensus 519 le~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l 561 (770)
.+++|..++++...+.+++++|..-.|.|..-..|+++|.++|
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 3556677777777888888888777777777777777666655
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.32 E-value=2e+02 Score=34.56 Aligned_cols=124 Identities=25% Similarity=0.302 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHH----hhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004170 463 LQRIEAESAAENAVSEHSALVAEV----EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERA 538 (770)
Q Consensus 463 l~r~EAe~~A~~Av~a~~~l~~~~----~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKera 538 (770)
+..|||+|-.-. ..-.++..+ -|.|+..|+-++..-|.-+.+..+--..+..|+.+++.+-++-+.-+.|
T Consensus 58 VR~LEaqN~~L~---~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~--- 131 (546)
T KOG0977|consen 58 VRFLEAQNRKLE---HDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEK--- 131 (546)
T ss_pred HHHHHHHHHHHH---HHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---
Confidence 455777773322 222333333 3678889999998888888877777777777777766654443333222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004170 539 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 539 a~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
.-+.+.--|.++++.+-+|..-..++.+=+.++.+|..++..=..+..++..+|
T Consensus 132 ----~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 132 ----AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred ----HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 222333445556666666666666666655555555555444444444444333
No 68
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.19 E-value=1.1e+02 Score=27.36 Aligned_cols=81 Identities=11% Similarity=0.162 Sum_probs=59.1
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 004170 663 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 742 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (770)
+.......++.+..|..+...+......+-..|-..+..|+..|.+.-..+..+..+...............++......
T Consensus 12 l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 12 LRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888888888888888888888888889999999888888888777766665555555555555554444
Q ss_pred h
Q 004170 743 R 743 (770)
Q Consensus 743 ~ 743 (770)
.
T Consensus 92 ~ 92 (127)
T smart00502 92 S 92 (127)
T ss_pred H
Confidence 3
No 69
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=64.13 E-value=3.3e+02 Score=32.94 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=21.9
Q ss_pred hHHHHHhcccccccC--CCcCCCCCccHHHHHHHH
Q 004170 260 QGQALSALQVLKVIE--ADVKPGDLCIRREYARWL 292 (770)
Q Consensus 260 qIeaLaaLGILkgiE--~~F~Pn~pITRaEFArwL 292 (770)
--+++..+|.-..++ ..-.|+..=+|.=|.-++
T Consensus 71 lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLi 105 (594)
T PF05667_consen 71 LAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLI 105 (594)
T ss_pred HHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHH
Confidence 456667788655444 567888888888765443
No 70
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=63.90 E-value=78 Score=40.26 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=5.2
Q ss_pred HHHHHHHHHhc
Q 004170 286 REYARWLVSAS 296 (770)
Q Consensus 286 aEFArwLVRAl 296 (770)
.++..+|.+.+
T Consensus 269 ~eL~dLI~~~L 279 (1021)
T PTZ00266 269 KELNILIKNLL 279 (1021)
T ss_pred HHHHHHHHHHh
Confidence 34555554443
No 71
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=63.75 E-value=2.8e+02 Score=32.06 Aligned_cols=259 Identities=17% Similarity=0.199 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHhHHHHHHHHHHhhh-----cceehhhHHHHHH
Q 004170 506 DVVEKMAEEARQELERLRAEREVDKIALMK----ERAAIESEMEILSKLRREVEEQLESLMS-----NKVEISYEKERIN 576 (770)
Q Consensus 506 ~~vek~~~~~~~ele~~r~~re~e~~~llK----eraa~e~e~~~L~~lr~evde~~q~l~s-----~~~~~~~E~~~l~ 576 (770)
.+||..+.++...|..--.+-+++...++. ..+-++..++-|..|..+|.+.++.=.. ..-=-..|++|..
T Consensus 25 ~e~e~~i~~~~~~l~~~l~~~d~~i~~~~~~l~~d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~ 104 (473)
T PF14643_consen 25 EEVEPLILEAGEDLKQKLAESDEEIEEIFSKLEDDSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERAD 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666655554444444444333 2345566677777777666664332111 0111246777777
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH------HHHHHHH--------------HhHHHHHHHHHHHHHHHHHHhHHHhhcCc
Q 004170 577 MLRKEAENENQEIARLQYELEVER------KALSMAR--------------AWAEDEAKRAREQAKALEGARDRWERQGI 636 (770)
Q Consensus 577 kl~~~~e~~~~~~~~~k~~LE~Ek------~AL~m~R--------------~W~EdEA~~~~e~A~vLeea~~rW~~~gi 636 (770)
+|.+-+..-...+.+.=+.+..+. +|..|=. .-.+.+-++-+....-.+...++|+..--
T Consensus 105 ~l~~~l~~~~~~L~~ia~~~~~dv~rli~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~ 184 (473)
T PF14643_consen 105 KLKKVLRKYVEILEKIAHLLPPDVERLIEKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRRRWQDRVDDWRALRH 184 (473)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 777777776666666655554433 2222211 11222222223333445666677775443
Q ss_pred EEEEcC---CccccccccchhhhcccccchHHHHHhHHHH----HHHHHHhhhhc-ccchHHHHHHHHHHHHHHHHHHHH
Q 004170 637 KVVVDK---DLREESDAAVMWVNAGKQFSVDQTVSRAQSL----VDKLKAMANDV-SGKSKEIINTIIHKILLFISNLKK 708 (770)
Q Consensus 637 ~v~vd~---~~~~~~~~~~~w~~~~~~~~~~~~~~ra~~~----~~k~~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~~~ 708 (770)
.-.|.. .+.-+....|..+- .-++.-...-..| ++-|..+..-. ...+..-+.+....+..+-..+-+
T Consensus 185 ~~~i~~f~~~~~s~~~~~P~~~~----~~~e~~~~~Q~~l~~~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~ 260 (473)
T PF14643_consen 185 ERAIQEFREFMASEEFQNPPERK----QLLEQMRKEQVDLHEKRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDE 260 (473)
T ss_pred HHHHHHHHHHhCccccCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333321 11111111111111 1111111111222 22222222211 245566677777777777777767
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchh-hhhhhhhhHHhhhhhc
Q 004170 709 WASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKR-VAGDCREGVEKLTQRF 768 (770)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~c~~~v~k~~~~f 768 (770)
+......+.....+.....+...++.+++...+++..-.+.+-. |...|-.-|+++-++|
T Consensus 261 ~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~ 321 (473)
T PF14643_consen 261 YHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEF 321 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888888888888887655555544 3456666666655544
No 72
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=63.23 E-value=3.1e+02 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHH
Q 004170 328 DPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSW 376 (770)
Q Consensus 328 dPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAaw 376 (770)
+..+++|..+.. ||.|||.+ ..-|.+.+.-|=..++..
T Consensus 75 ~a~vdhI~nlrr--Iiagyl~~---------aygY~~~~a~~lA~fit~ 112 (489)
T PF05262_consen 75 NARVDHINNLRR--IIAGYLEA---------AYGYSDEDAETLATFITI 112 (489)
T ss_pred CCCccHHHHHHH--HHHHHHHH---------hcCCChhhHHHHHHHHHH
Confidence 456888887754 78888743 223767666555555543
No 73
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=62.63 E-value=1.7e+02 Score=29.19 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 004170 526 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 582 (770)
Q Consensus 526 re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~ 582 (770)
|..-.+.+...|..+..+.++|..+..++.+.|..+..+ + -+.-|.+|..+.
T Consensus 61 r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--~---y~~~l~~li~~~ 112 (188)
T PRK02292 61 QELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--K---REELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--h---HHHHHHHHHHhc
Confidence 444455667777899999999999999999999998875 2 256777777765
No 74
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=61.77 E-value=1.4e+02 Score=30.34 Aligned_cols=85 Identities=8% Similarity=0.230 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHHHhhhhhhccchhhhHH---HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHH
Q 004170 473 ENAVSEHSALVAEVEKEINESFEKELSME---REKIDVVEKMAEEARQELERLRAE-REVDKIALMKERAAIESEMEILS 548 (770)
Q Consensus 473 ~~Av~a~~~l~~~~~gdi~~~F~~~~~~e---R~~~~~vek~~~~~~~ele~~r~~-re~e~~~llKeraa~e~e~~~L~ 548 (770)
..++.-+..+++.-+..|.+.++.-.... .+...+.|+.+.+|+.|..+++.+ |++-.++...+|+++|.+-- .
T Consensus 29 kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~--~ 106 (155)
T PRK06569 29 KFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK--N 106 (155)
T ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 33444444555544444444444221111 122334777888899999999998 99999999999999987644 3
Q ss_pred HhHHHHHHHHH
Q 004170 549 KLRREVEEQLE 559 (770)
Q Consensus 549 ~lr~evde~~q 559 (770)
-|.+|+.+|.-
T Consensus 107 ~~~~~~~~~~~ 117 (155)
T PRK06569 107 SINQNIEDINL 117 (155)
T ss_pred HHHHHHHHHHH
Confidence 45677777653
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=60.54 E-value=4.5e+02 Score=33.39 Aligned_cols=263 Identities=18% Similarity=0.230 Sum_probs=127.8
Q ss_pred hHHHHHHHHHhHHHH--HHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhh
Q 004170 464 QRIEAESAAENAVSE--HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELE---RLRAEREVDKIALMKERA 538 (770)
Q Consensus 464 ~r~EAe~~A~~Av~a--~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele---~~r~~re~e~~~llKera 538 (770)
.|++++++-..+..+ .-+|+++-++ . ..|+++ .+++||--..|..+.- +.+..-+.++..|+-+.|
T Consensus 319 kylh~enmkltrqkadirc~LlEarrk-~-egfddk-------~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~a 389 (1265)
T KOG0976|consen 319 KYLHLENMKLTRQKADIRCALLEARRK-A-EGFDDK-------LNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQA 389 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cchhHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655544444 2344444222 2 244433 3334443333333322 222333456667777788
Q ss_pred HHHHHHHHHHH--------------hHHHHHHHHHHh---hhcceehhhHHHHHHHHHHHHH--------HHHHHHHHhH
Q 004170 539 AIESEMEILSK--------------LRREVEEQLESL---MSNKVEISYEKERINMLRKEAE--------NENQEIARLQ 593 (770)
Q Consensus 539 a~e~e~~~L~~--------------lr~evde~~q~l---~s~~~~~~~E~~~l~kl~~~~e--------~~~~~~~~~k 593 (770)
..+.|+++|.+ .+.|+.+-+++| -+.++..-|--++++-|-+-.+ ..++-|.+++
T Consensus 390 erqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir 469 (1265)
T KOG0976|consen 390 ERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR 469 (1265)
T ss_pred HHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence 77878777653 233444444443 3333332233334444443333 3333333322
Q ss_pred ---HHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEc--CCccccccccchhhhcccccchHH
Q 004170 594 ---YELEVERK---ALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD--KDLREESDAAVMWVNAGKQFSVDQ 665 (770)
Q Consensus 594 ---~~LE~Ek~---AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd--~~~~~~~~~~~~w~~~~~~~~~~~ 665 (770)
.-||.-|| -+-|+.+--+.||+|-.+--+.|.+.+=-++..--+..-- +|-.-++++ ....+-+--+
T Consensus 470 ~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~ag~h~adssq-----rdselrsAkk 544 (1265)
T KOG0976|consen 470 ALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKAGDHPADSSQ-----RDSELRSAKK 544 (1265)
T ss_pred HHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc-----ccHHHHHHHH
Confidence 22232222 1346666667777776655555544432222100000000 111111111 1233444556
Q ss_pred HHHhHHHHHHHHHHhhhhcc----------cchHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhhhhH
Q 004170 666 TVSRAQSLVDKLKAMANDVS----------GKSKEIINTIIHKILLFIS---NLKKWASKASMRAAELKDATILKAKGSV 732 (770)
Q Consensus 666 ~~~ra~~~~~k~~~~~~~~~----------~~~~~~~~~~~~~i~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (770)
||.|...=--|+.+|-..++ .++|.-..+.+++|-+.-. ..|+--+.++..+..++|. ..|..+.+
T Consensus 545 tIqevkadn~k~q~lL~evrq~q~k~leenv~lRkgma~a~~kIee~kr~w~nsret~erl~let~~~e~k-~~k~eeel 623 (1265)
T KOG0976|consen 545 TIQEVKADNPKAQSLLAEVRQRQKKSLEENVFLRKGMARAHHKIEERKRVWLNSRETKERLCLETVHFEDK-LDKLEEEL 623 (1265)
T ss_pred HHHhccccCHHHHHHhhchhhhhhhccChHHHHHHHHHHHHhhhHHHHhhhhhhHHHHHHHHHHhhhhhhh-hHHHHHHH
Confidence 77665333334445544444 5666666777777766543 3566666777777888888 78888888
Q ss_pred HHHHHhHHH
Q 004170 733 QELQQSTAE 741 (770)
Q Consensus 733 ~~~~~~~~~ 741 (770)
++..+-|.+
T Consensus 624 qek~~qVme 632 (1265)
T KOG0976|consen 624 QEKECQVME 632 (1265)
T ss_pred HHHHHHHhc
Confidence 888776654
No 76
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=60.36 E-value=5.2e+02 Score=34.04 Aligned_cols=60 Identities=8% Similarity=0.202 Sum_probs=33.3
Q ss_pred hhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHH-----HHHHHHHHHHHHHHHHHhhHH
Q 004170 655 VNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTII-----HKILLFISNLKKWASKASMRA 717 (770)
Q Consensus 655 ~~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~-----~~i~~~i~~~~~~~~~~~~~~ 717 (770)
.+.|+..++-+.+.+-+.-++.. ..-++.+=|+++..|+ .||+..|..=++|+..+-...
T Consensus 1076 ~~~g~~~~~~~l~~~l~~~i~~~---~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l 1140 (1353)
T TIGR02680 1076 VYQGRPVTPAGLLARLEQEIAQR---RELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTEL 1140 (1353)
T ss_pred EeCCcccCHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666554444333 3345566666665554 556666666666665554443
No 77
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=60.31 E-value=4.3e+02 Score=33.01 Aligned_cols=60 Identities=30% Similarity=0.355 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------HHHHhHHHHHHHHHHhhhcceehhhH
Q 004170 508 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEME---------ILSKLRREVEEQLESLMSNKVEISYE 571 (770)
Q Consensus 508 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~---------~L~~lr~evde~~q~l~s~~~~~~~E 571 (770)
|.-+.+++.+-+.. -|+....+.|||-|+..|+. ++..+-.|-|||.-.|+.+--+.+-+
T Consensus 400 ~ssl~~e~~QRva~----lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 400 VSSLREEYHQRVAT----LEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred ccchHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555544433 34555678888888877766 34445566889999888876666544
No 78
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.79 E-value=3.6e+02 Score=31.94 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHH
Q 004170 591 RLQYELEVERKA 602 (770)
Q Consensus 591 ~~k~~LE~Ek~A 602 (770)
+++..||.|+++
T Consensus 85 ~l~~~le~~~~~ 96 (475)
T PRK10361 85 EVTTRMEAAQQH 96 (475)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=59.78 E-value=4.7e+02 Score=33.29 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHH---HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004170 527 EVDKIALMKERAAIESEMEILSKLRRE---VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERK 601 (770)
Q Consensus 527 e~e~~~llKeraa~e~e~~~L~~lr~e---vde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~ 601 (770)
+.++-.+-.++|+|.|.. ..-|.. .|+.++.|--.+-+....-.+|+.+.+..+.+.|.+..++.+++--..
T Consensus 322 h~enmkltrqkadirc~L---lEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCAL---LEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777753 333333 344444454445444455556666666666666666666666554433
No 80
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.93 E-value=5.2e+02 Score=33.54 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=52.5
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHhhhhHH
Q 004170 663 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNL------KKWASKASMRAAELKDATILKAKGSVQ 733 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (770)
+-++=+|-+.|-+|...|-..|+-+.-.+|++.=.++..|.+.. |..+.+.....++.+-.+..||+.++.
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN 1036 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVN 1036 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666778888888888889999999998887777665544 455666666778888888888876653
No 81
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=58.93 E-value=60 Score=32.71 Aligned_cols=102 Identities=19% Similarity=0.223 Sum_probs=71.2
Q ss_pred HHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhh
Q 004170 665 QTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRS 744 (770)
Q Consensus 665 ~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (770)
..++...++.++|+.=..+-+++..+++..+..+|.+--..||..--++-+++.+|++.--+-+...++++|-.+.+++.
T Consensus 38 ~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~ 117 (155)
T PF07464_consen 38 SVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSE 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666656666789999999999999999999999888999999999988777788888888888888776
Q ss_pred hhcc-------cchhhhhhhhhhHHhhhh
Q 004170 745 NLTE-------GAKRVAGDCREGVEKLTQ 766 (770)
Q Consensus 745 ~~~~-------~~k~~~~~c~~~v~k~~~ 766 (770)
.+.. ..|.+.|+.-..+.++..
T Consensus 118 ~~~~~~e~l~~~~K~~~D~~~k~~~~~~~ 146 (155)
T PF07464_consen 118 NSEGANEKLQPAIKQAYDDAVKAAQKVQK 146 (155)
T ss_dssp ---SS-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433 344455555555554443
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.07 E-value=2e+02 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004170 504 KIDVVEKMAEEARQELERLRAEREVD 529 (770)
Q Consensus 504 ~~~~vek~~~~~~~ele~~r~~re~e 529 (770)
+..+.++...+...++..++.+....
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444333
No 83
>PRK11281 hypothetical protein; Provisional
Probab=57.28 E-value=5.6e+02 Score=33.39 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHh
Q 004170 607 RAWAEDEAKRAREQAKALEGARDRWE 632 (770)
Q Consensus 607 R~W~EdEA~~~~e~A~vLeea~~rW~ 632 (770)
|.+...+-.+-+++-+.|.++-..++
T Consensus 229 ~d~~~~~~~~~~~~~~~lq~~in~kr 254 (1113)
T PRK11281 229 RDYLTARIQRLEHQLQLLQEAINSKR 254 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666555554
No 84
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=57.01 E-value=54 Score=34.75 Aligned_cols=103 Identities=20% Similarity=0.140 Sum_probs=61.0
Q ss_pred hhhcccCccccCCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHccccchhhHHhhhHHHHHHH
Q 004170 392 ILYQLSGFIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESA 471 (770)
Q Consensus 392 ~l~~~~~F~DadkIs~~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAAAaL~sG~~~e~v~eEl~r~EAe~~ 471 (770)
..+.-..|.|.+.+|.|+..-= ...++|+-|||+++++.+=-.-+.-++- .-.--||.-
T Consensus 62 ~~yNRyaf~D~d~LP~WF~eDE------------------~kH~k~~~Pvtke~v~~~k~k~~einaR---PIKKV~EAk 120 (215)
T PF07780_consen 62 DSYNRYAFNDDDGLPDWFVEDE------------------KKHNKPQLPVTKEEVAEYKEKLREINAR---PIKKVAEAK 120 (215)
T ss_pred hhccccccCCCCCCchhHHHHH------------------HhhcCCCCCCCHHHHHHHHHHHHHHcCC---chHHHHHHH
Confidence 3455567999989999998642 1247899999999988754321111110 122335555
Q ss_pred HHhHHHHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHH
Q 004170 472 AENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEAR 516 (770)
Q Consensus 472 A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~ 516 (770)
|+.=.-+.-. +++.+.=...--+...-.||++...++++|--+.
T Consensus 121 aRKK~Ra~kk-lek~kkKa~~I~~~~d~se~eK~~~i~kl~kka~ 164 (215)
T PF07780_consen 121 ARKKRRAAKK-LEKAKKKAEAIADDEDMSEREKAKQIKKLYKKAK 164 (215)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhcCcCCChHHHHHHHHHHHHHhh
Confidence 5554443222 2222222223445555568999999999996554
No 85
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.00 E-value=90 Score=37.74 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004170 568 ISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 568 ~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
|-.=..+|.+|..+++++...+.+|+-.|+-=+
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456788889999998888888888876544
No 86
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.57 E-value=63 Score=38.32 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH
Q 004170 539 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 584 (770)
Q Consensus 539 a~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~ 584 (770)
++..-++.|-.|+.|...+.+.+.+-+-++..+++.++....+++.
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3334444555555555555555555555555555555555544443
No 87
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.52 E-value=34 Score=39.56 Aligned_cols=126 Identities=29% Similarity=0.340 Sum_probs=61.9
Q ss_pred HHHHHHHHHHH--HhhhhhHHHHHHHHHHH-------------------hHH------HHHHHHHHhhhcceehhhHHHH
Q 004170 522 LRAEREVDKIA--LMKERAAIESEMEILSK-------------------LRR------EVEEQLESLMSNKVEISYEKER 574 (770)
Q Consensus 522 ~r~~re~e~~~--llKeraa~e~e~~~L~~-------------------lr~------evde~~q~l~s~~~~~~~E~~~ 574 (770)
.|+++|+|.+. |||+.-|+-.+++-|.. ||+ ..++|.|-..-+|..-..+|-.
T Consensus 92 araeqeeEfisntLlkkiqal~keketla~~Ye~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Kle 171 (552)
T KOG2129|consen 92 ARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLE 171 (552)
T ss_pred hccchHHHHHHHHHHHHHHHhhccccccchhhhhhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777664 77777777666655443 332 1333444333333322222222
Q ss_pred HHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccc
Q 004170 575 INMLRKEA--ENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAV 652 (770)
Q Consensus 575 l~kl~~~~--e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~ 652 (770)
-..+++.. |.-.-+..++...||-|.|||+- +-|-. .+ -||.- .|. .-+-|++..++-+
T Consensus 172 n~t~~kq~~leQLRre~V~lentlEQEqEalvN-~LwKr-----md----kLe~e-kr~--------Lq~KlDqpvs~p~ 232 (552)
T KOG2129|consen 172 NKTLLKQNTLEQLRREAVQLENTLEQEQEALVN-SLWKR-----MD----KLEQE-KRY--------LQKKLDQPVSTPS 232 (552)
T ss_pred hhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHH-HHHHH-----HH----HHHHH-HHH--------HHHHhcCcccCCC
Confidence 22222222 33334556667777777777753 45521 11 11111 111 1112466667777
Q ss_pred hhhhcccccchHHH
Q 004170 653 MWVNAGKQFSVDQT 666 (770)
Q Consensus 653 ~w~~~~~~~~~~~~ 666 (770)
+-++..+.+.|.+-
T Consensus 233 ~prdia~~~~~~gD 246 (552)
T KOG2129|consen 233 LPRDIAKIPDVHGD 246 (552)
T ss_pred chhhhhcCccccCc
Confidence 77777777766653
No 88
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=56.33 E-value=1.2e+02 Score=33.23 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=29.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004170 586 NQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALE 625 (770)
Q Consensus 586 ~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLe 625 (770)
+.....+-.++++..+-|+.-.-|.++|.+++.+....|-
T Consensus 197 ~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~ 236 (264)
T PF07246_consen 197 REDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLR 236 (264)
T ss_pred hhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556777777788887899999999888776654
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.88 E-value=4.5e+02 Score=31.89 Aligned_cols=126 Identities=20% Similarity=0.137 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHH
Q 004170 509 EKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQE 588 (770)
Q Consensus 509 ek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~ 588 (770)
...|+....+++--+...++.+..+=+|-...|.|.|.|..-..++--|++. . .|+.+ -++++..+.+.-.+.
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~---Q--~iS~~--dve~mn~Er~~l~r~ 347 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL---Q--GISGE--DVERMNLERNKLKRE 347 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c--CCCHH--HHHHHHHHHHHHHHH
Confidence 3567778888888888888888888889999999988776544433333321 1 33333 244455555555666
Q ss_pred HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEc
Q 004170 589 IARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVD 641 (770)
Q Consensus 589 ~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd 641 (770)
+.+.+++++...+-+-=+-.-+++=.+-..-...-|-...+|-...++..-++
T Consensus 348 l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 348 LNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666665554433333334444444445555666667766665555555
No 90
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.76 E-value=3.7e+02 Score=32.76 Aligned_cols=78 Identities=27% Similarity=0.307 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHHHHHH---HHHhhhcceehhhHHHHHH
Q 004170 503 EKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVEEQ---LESLMSNKVEISYEKERIN 576 (770)
Q Consensus 503 ~~~~~vek~~~~~~~ele~~r~~re~---e~~~llKeraa~e~e~~~L~~lr~evde~---~q~l~s~~~~~~~E~~~l~ 576 (770)
.||.++|.-+-..++||++.+.|+|. ....+..-.+++|.|+- +||.|+.|- =+||.++-.|.--|-=-||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46778888888888888888887664 33456666788888874 566666553 4677777666655555566
Q ss_pred HHHHHHH
Q 004170 577 MLRKEAE 583 (770)
Q Consensus 577 kl~~~~e 583 (770)
|+-+-+-
T Consensus 184 KqVs~LR 190 (772)
T KOG0999|consen 184 KQVSNLR 190 (772)
T ss_pred HHHHHHh
Confidence 6655443
No 91
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.63 E-value=2.9e+02 Score=29.60 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 004170 576 NMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE 597 (770)
+.++.+++.-+..+...+..|+
T Consensus 192 ~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 192 DAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 3333333333333444444444
No 92
>PRK03918 chromosome segregation protein; Provisional
Probab=55.55 E-value=4.6e+02 Score=31.90 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 004170 507 VVEKMAEEARQELERL 522 (770)
Q Consensus 507 ~vek~~~~~~~ele~~ 522 (770)
.+++-+.....+++++
T Consensus 204 ~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 204 EVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 93
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.77 E-value=4.4e+02 Score=31.51 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=13.0
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 004170 559 ESLMSNKVEISYEKERINMLRKEAENENQ 587 (770)
Q Consensus 559 q~l~s~~~~~~~E~~~l~kl~~~~e~~~~ 587 (770)
+.+.++--....|++.|++-...++.+..
T Consensus 251 ~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 251 KKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444445555544444444433
No 94
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.37 E-value=6e+02 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=11.2
Q ss_pred CCCCcCcHHHHHHHHHH
Q 004170 363 LPESPLSRQDLVSWKMA 379 (770)
Q Consensus 363 ~PD~PITRQELAawkva 379 (770)
.|...+-+.++..|...
T Consensus 218 ~~~~~~~~~~i~~W~~~ 234 (1201)
T PF12128_consen 218 PPKSRLKKNDIDDWLRD 234 (1201)
T ss_pred chhhhcchhhHHHHHHH
Confidence 35555777788888653
No 95
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=54.26 E-value=1.9e+02 Score=35.39 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=28.5
Q ss_pred cchhhHHhhhHHHHHHHHHhHHHHHHHHHHHH--hhhhhhccchhhhHHHhhHHHHHHHHH
Q 004170 455 ASDAVNEELQRIEAESAAENAVSEHSALVAEV--EKEINESFEKELSMEREKIDVVEKMAE 513 (770)
Q Consensus 455 ~~e~v~eEl~r~EAe~~A~~Av~a~~~l~~~~--~gdi~~~F~~~~~~eR~~~~~vek~~~ 513 (770)
..+...|-|+|+|-..-+- +--++-|.+|+ ||+--+-.+--+..-|.+-.+-|.|++
T Consensus 105 ~~~~yQerLaRLe~dkesL--~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ 163 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESL--QLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ 163 (861)
T ss_pred cchHHHHHHHHHhcchhhh--eehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH
Confidence 3455667778877433110 11256677776 454333333333444555555555554
No 96
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=54.02 E-value=4.3e+02 Score=31.10 Aligned_cols=85 Identities=28% Similarity=0.256 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHH
Q 004170 503 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEA 582 (770)
Q Consensus 503 ~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~ 582 (770)
.....+...+..+..||+..+..-++-+.+...=|..+++=+-.|.+.|.|+..+-+++....+.|..=+..|++++.++
T Consensus 274 ~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 274 EKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 33344445566666666666666666666666666666666666666666666666666666666555555555555555
Q ss_pred HHHHH
Q 004170 583 ENENQ 587 (770)
Q Consensus 583 e~~~~ 587 (770)
+.-+.
T Consensus 354 ea~~~ 358 (522)
T PF05701_consen 354 EAAKA 358 (522)
T ss_pred HHHHh
Confidence 44333
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=53.60 E-value=4.3e+02 Score=30.96 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004170 507 VVEKMAEEARQELERLRAEREV 528 (770)
Q Consensus 507 ~vek~~~~~~~ele~~r~~re~ 528 (770)
++|---+.|++||+.-++||+.
T Consensus 99 ~~e~er~~~~~El~~~r~e~~~ 120 (499)
T COG4372 99 AAETEREAARSELQKARQEREA 120 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455566555555543
No 98
>PRK02224 chromosome segregation protein; Provisional
Probab=53.29 E-value=5.1e+02 Score=31.72 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=6.4
Q ss_pred ehhhHHHHHHHHHHHH
Q 004170 567 EISYEKERINMLRKEA 582 (770)
Q Consensus 567 ~~~~E~~~l~kl~~~~ 582 (770)
.+-..+.+++++.+++
T Consensus 259 ~~~~l~~~i~~~e~~~ 274 (880)
T PRK02224 259 EIEDLRETIAETERER 274 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444443333
No 99
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.78 E-value=4.1e+02 Score=30.47 Aligned_cols=14 Identities=7% Similarity=-0.016 Sum_probs=6.4
Q ss_pred ccCCCCCcHHHHHH
Q 004170 435 FQPDKPVTNAQAAV 448 (770)
Q Consensus 435 FqPnkPVTRAEAAA 448 (770)
|-+.++-.|.+.--
T Consensus 144 f~~~~~~er~~il~ 157 (562)
T PHA02562 144 FMQLSAPARRKLVE 157 (562)
T ss_pred HhcCChHhHHHHHH
Confidence 44445555544433
No 100
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=52.47 E-value=1.3e+02 Score=35.00 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhHHHh
Q 004170 574 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKR--AREQAKALEGARDRWE 632 (770)
Q Consensus 574 ~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~--~~e~A~vLeea~~rW~ 632 (770)
++-.|+.+.-..+++-.+-+-+-.++||++.-.|.=++.|.++ .+||++..++++.|-+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRA 381 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666677777777777777777889999999999999999988 7778888888777653
No 101
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=52.35 E-value=1.6e+02 Score=35.18 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 544 MEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 544 ~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
++-+..++.-|++.-+.=...=..+..=++.+++|.++++.+.+.+..++.+|+.+++.+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444445555554444211111233344566777777777777777777777777776653
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.94 E-value=1e+02 Score=33.83 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004170 516 RQELERLRAEREVDKIALMKERAAIESEMEI 546 (770)
Q Consensus 516 ~~ele~~r~~re~e~~~llKeraa~e~e~~~ 546 (770)
...|++++.+-.+++..|-+|++.++.|...
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555666665555443
No 103
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=51.74 E-value=1.1e+02 Score=38.98 Aligned_cols=77 Identities=29% Similarity=0.384 Sum_probs=50.9
Q ss_pred HHHHhHHHHHHHHHHhhh-cceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH---HHHHHHHH
Q 004170 546 ILSKLRREVEEQLESLMS-NKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDE---AKRAREQA 621 (770)
Q Consensus 546 ~L~~lr~evde~~q~l~s-~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdE---A~~~~e~A 621 (770)
+...||+|||.....|.+ ++.+.-.=+++++++.+-++. |--+|-|.= -.-.+||-
T Consensus 365 virElReEve~lr~qL~~ae~~~~~el~e~l~esekli~e--------------------i~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 365 VIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKE--------------------ITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHH--------------------HHhHHHHHHHHHHHHHHHHH
Confidence 456689999999988887 555555555555555444332 112332211 12357888
Q ss_pred HHHHHHhHHHhhcCcEEEEcC
Q 004170 622 KALEGARDRWERQGIKVVVDK 642 (770)
Q Consensus 622 ~vLeea~~rW~~~gi~v~vd~ 642 (770)
+-||.++...+--||||-=|+
T Consensus 425 ~~L~~~gis~~~sgikv~dDK 445 (1714)
T KOG0241|consen 425 AQLESMGISLENSGIKVGDDK 445 (1714)
T ss_pred HHHHHHHHHHhcccccccccc
Confidence 899999999999999986655
No 104
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=51.65 E-value=3e+02 Score=32.51 Aligned_cols=75 Identities=35% Similarity=0.357 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHhHHH
Q 004170 543 EMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEI----------ARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 543 e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~----------~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
|-+-|+.||+-|+-+..+ | |-++|-.-++++|.+.+.- .=||+.-|+|-+=+.+=|.=+|.
T Consensus 291 ea~rl~elreg~e~e~~r----k-----elE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaek 361 (575)
T KOG4403|consen 291 EAPRLSELREGVENETSR----K-----ELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEK 361 (575)
T ss_pred hhhhhhhhhcchhHHHHH----H-----HHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344566666655544433 1 3344444444444444332 12566677888888999999998
Q ss_pred HHHHHHHHHHHHHH
Q 004170 613 EAKRAREQAKALEG 626 (770)
Q Consensus 613 EA~~~~e~A~vLee 626 (770)
+-+-++|-|.-|..
T Consensus 362 ql~~Ake~~eklkK 375 (575)
T KOG4403|consen 362 QLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766554
No 105
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=3.1e+02 Score=33.25 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=81.5
Q ss_pred HHHHHHhHHHH--HHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 004170 468 AESAAENAVSE--HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEME 545 (770)
Q Consensus 468 Ae~~A~~Av~a--~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~ 545 (770)
|-++++.|.+- .+....+++|.++ +++.+. .+.-+.++-+.+...|.+++|-+..+..+++- |- +-.|+.
T Consensus 406 Ah~~~ddar~~pe~~d~i~~le~e~~-~y~de~----~kaqaevdrlLeilkeveneKnDkdkkiaele--r~-~kdqnk 477 (654)
T KOG4809|consen 406 AHNIEDDARMNPEFADQIKQLEKEAS-YYRDEC----GKAQAEVDRLLEILKEVENEKNDKDKKIAELE--RH-MKDQNK 477 (654)
T ss_pred HHHhhHhhhcChhhHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHhhhccccchhhhcC--ch-hhhhhh
Confidence 34444444432 4555556677774 444433 34445566667788888998887777666553 22 222233
Q ss_pred HHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHH-HhHHHHHHHH---HH
Q 004170 546 ILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE--AENENQEIARLQYELEVERKALSMAR-AWAEDEAKRA---RE 619 (770)
Q Consensus 546 ~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~--~e~~~~~~~~~k~~LE~Ek~AL~m~R-~W~EdEA~~~---~e 619 (770)
-..+|++.--+-+..-+-.-++|-.+.+.+-.-+.. ++...-++.++|.+|++=+--|++.| +-+|.|+--+ ++
T Consensus 478 kvaNlkHk~q~Ekkk~aq~lee~rrred~~~d~sqhlq~eel~~alektkQel~~tkarl~stqqslaEke~HL~nLr~e 557 (654)
T KOG4809|consen 478 KVANLKHKQQLEKKKNAQLLEEVRRREDSMADNSQHLQIEELMNALEKTKQELDATKARLASTQQSLAEKEAHLANLRIE 557 (654)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444332222333333344555555544222221 44445566666777776666666664 5566665443 35
Q ss_pred HHHHHHHHhH
Q 004170 620 QAKALEGARD 629 (770)
Q Consensus 620 ~A~vLeea~~ 629 (770)
|-+.||++-.
T Consensus 558 rrk~Lee~le 567 (654)
T KOG4809|consen 558 RRKQLEEILE 567 (654)
T ss_pred HHHHHHHHHH
Confidence 6677777643
No 106
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=51.18 E-value=2.5e+02 Score=29.83 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=59.8
Q ss_pred HHHHHHHhhhhhHHHHHH-HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004170 527 EVDKIALMKERAAIESEM-EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSM 605 (770)
Q Consensus 527 e~e~~~llKeraa~e~e~-~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m 605 (770)
-+++..++||||.||.+- .-|.+|-.... ...++-.=+.-++.++.+++..-..=..+...|..|-+-|.-
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~--------~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~ 92 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAG--------GQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEE 92 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999998763 23333333332 223444445667777777776655555556666666555888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHhhc
Q 004170 606 ARAWAEDEAKRAREQAKALEGARDRWERQ 634 (770)
Q Consensus 606 ~R~W~EdEA~~~~e~A~vLeea~~rW~~~ 634 (770)
.+.|-.++-|+... ..+.+...|..+
T Consensus 93 f~~~qke~rK~~e~---~~eK~qk~~~~~ 118 (242)
T cd07671 93 FRERQKEQRKKYEA---VMERVQKSKVSL 118 (242)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 89999887666553 345555555543
No 107
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.75 E-value=4.7e+02 Score=30.57 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=31.7
Q ss_pred chhhHHhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHH
Q 004170 456 SDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMA 512 (770)
Q Consensus 456 ~e~v~eEl~r~EAe~~A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~ 512 (770)
-+++-+||.-+- +-.+...... -.|.++.+.|+ .+.-..+..||=|-+-+|..+
T Consensus 262 l~aileeL~eIk-~~q~~Leesy-e~Lke~~krdy-~fi~etLQEERyR~erLEEqL 315 (455)
T KOG3850|consen 262 LDAILEELREIK-ETQALLEESY-ERLKEQIKRDY-KFIAETLQEERYRYERLEEQL 315 (455)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 678878876543 2222332222 34555557777 577777777777766655544
No 108
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.66 E-value=8.7e+02 Score=33.66 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 004170 527 EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 568 (770)
Q Consensus 527 e~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~ 568 (770)
++.+..+=+++-.++.+.+.|.....+++.+++.|..++...
T Consensus 921 ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~ 962 (1930)
T KOG0161|consen 921 EEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAA 962 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666777777777777777777665544
No 109
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.93 E-value=3.1e+02 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHhHHH
Q 004170 597 EVERKALSMARAWAEDEAKRAREQA-KALEGARDRW 631 (770)
Q Consensus 597 E~Ek~AL~m~R~W~EdEA~~~~e~A-~vLeea~~rW 631 (770)
++..++-.+.|-.-++=-..+..+| .+|-.|-+|.
T Consensus 162 e~~~e~a~~ir~~eeeak~~A~~~Ar~Ii~~AiQR~ 197 (201)
T PF12072_consen 162 EARREAAALIRRIEEEAKEEADKKARRIIATAIQRY 197 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555543322222233333 2455555543
No 110
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=49.17 E-value=2.4e+02 Score=26.72 Aligned_cols=9 Identities=33% Similarity=0.601 Sum_probs=3.6
Q ss_pred hhhhhhhhh
Q 004170 751 KRVAGDCRE 759 (770)
Q Consensus 751 k~~~~~c~~ 759 (770)
.+++++...
T Consensus 187 ~~~~~~~~~ 195 (202)
T PF01442_consen 187 DRISEDIEE 195 (202)
T ss_dssp CCHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444333
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.66 E-value=8.3e+02 Score=32.87 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 004170 569 SYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGAR 628 (770)
Q Consensus 569 ~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~ 628 (770)
..-++.+.++..+++.-.+++..++..+.....++..+ +.++..-+.....|+.|.
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqLaelqqel~el----Q~el~q~qq~i~~Le~~~ 427 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQ----QTRAIQYQQAVQALERAK 427 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544444444333 334444455555566653
No 112
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=48.34 E-value=6.3e+02 Score=31.34 Aligned_cols=16 Identities=6% Similarity=0.397 Sum_probs=10.4
Q ss_pred ccCCCCcCcHHHHHHH
Q 004170 361 FFLPESPLSRQDLVSW 376 (770)
Q Consensus 361 tF~PD~PITRQELAaw 376 (770)
+|--+.++|+.++...
T Consensus 110 ~~~n~~~~~~~~~~~~ 125 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHDF 125 (1164)
T ss_pred EEECCccccHHHHHHH
Confidence 4555667887776654
No 113
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=48.29 E-value=2.7e+02 Score=35.76 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=2.7
Q ss_pred HHHhhH
Q 004170 500 MEREKI 505 (770)
Q Consensus 500 ~eR~~~ 505 (770)
.||++.
T Consensus 435 ~ER~r~ 440 (1021)
T PTZ00266 435 AERARI 440 (1021)
T ss_pred HHHHHH
Confidence 344443
No 114
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.92 E-value=1.3e+02 Score=34.64 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHH-HhhhcceehhhHHHHHHHHHHH
Q 004170 503 EKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLE-SLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 503 ~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q-~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
+++.++++.+.++..++++++. ++++++.+..+|..++.-..+... .+..+.. .=..+.++..-
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 135 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLED-----------RGDALKALAKFLEDIREGLTEPIKDSAKRNEP----DLKEWFQAFDF 135 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhccccccccccCCC----CHHHHHHHHHH
Confidence 3444455555444444444443 566777777777777642211100 0000000 11235555555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 004170 582 AENENQEIARLQYELEVERKALSMARAWAEDE 613 (770)
Q Consensus 582 ~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdE 613 (770)
+..+..++.....+|+.+.+.|.--...+++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666655555444444
No 115
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=47.14 E-value=6.5e+02 Score=31.80 Aligned_cols=188 Identities=19% Similarity=0.290 Sum_probs=105.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKER------AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 575 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKer------aa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l 575 (770)
|.+-++.+..-.....-|+++-.=-+....+|+++. +|+.-|+..-.-|++||.+---...| .-|.-++
T Consensus 91 r~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~~~~s-----~~e~a~~ 165 (966)
T KOG4286|consen 91 RSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEPVIMS-----TLETARI 165 (966)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcccHHHH-----HHHHHHH
Confidence 444444444444444444444333333334555553 68888889889999998764222211 2244444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhh
Q 004170 576 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 655 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~ 655 (770)
-=.+-.+|...+ .+-.++++-|-.|-.+.| -.+-+| |++..-|++-||.++ .|
T Consensus 166 fl~~~p~e~~e~--~~~~~e~~p~~r~q~~~r--------~~~kqa---~~~~~~we~l~~~~~-------------~w- 218 (966)
T KOG4286|consen 166 FLTEQPLEGLEK--YQEPRELPPEERAQNVTR--------LLRKQA---EEVNTEWEKLNLHSA-------------DW- 218 (966)
T ss_pred HHhcCCCcchhh--cCCcccCCHHHHHHHHHH--------HHHHHH---HHHHHHHHHhCcchh-------------hH-
Confidence 444444444433 445566665554444333 233344 677789999998763 34
Q ss_pred hcccccchHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 004170 656 NAGKQFSVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIH---KILLFISNLKKWASKASMRAAELKDATI 725 (770)
Q Consensus 656 ~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~------~~~~~~~~~~~~---~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 725 (770)
+-.|+.|+.|-+.|-..+..+..+++ +--+-|=+-+|. --++-|..+|+.++.+...++.+.|.+.
T Consensus 219 ----~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ 293 (966)
T KOG4286|consen 219 ----QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLAR 293 (966)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHH
Confidence 45688888888777776666666554 111112122222 2233455677777777777777777654
No 116
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=46.63 E-value=1.8e+02 Score=33.07 Aligned_cols=50 Identities=32% Similarity=0.442 Sum_probs=40.6
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 004170 556 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 556 e~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
+|++.|++-++ ..-=++.++||+++++..++++..++..+.. |.--|.+|
T Consensus 375 ~q~~yLL~m~L-~~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~------~~~l~~~d 424 (426)
T PF00521_consen 375 EQADYLLSMPL-RRLTKEEIEKLQKEIKELEKEIEELEKILPK------IKDLWKKD 424 (426)
T ss_dssp HHHHHHHTSBG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC------HHHHHHHH
T ss_pred HHHHHHHhchH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 88999998888 4444688899999999999999999998877 55556654
No 117
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.50 E-value=3.2e+02 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=12.6
Q ss_pred cceehhhHHHHHHHHHHHHHHH
Q 004170 564 NKVEISYEKERINMLRKEAENE 585 (770)
Q Consensus 564 ~~~~~~~E~~~l~kl~~~~e~~ 585 (770)
-|+.+-.||.++..+...++.+
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~k 128 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELK 128 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3555556666666555555555
No 118
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.25 E-value=3.1e+02 Score=28.18 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 004170 578 LRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 632 (770)
Q Consensus 578 l~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~ 632 (770)
|+.+++.-.+++.+++.+|+ -.+.|=-+.-.+.++....+-+|-.||.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~-------~~~~~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE-------KYSENDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555444 2344544555566666777777888886
No 119
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=46.09 E-value=4e+02 Score=28.49 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004170 524 AEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 603 (770)
Q Consensus 524 ~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL 603 (770)
.+=++-+..++++=..++.|-..|..++.|.+..++ |+.+..+-+.++..+...|..+-..++.|+..
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~-----------Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~- 78 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQ-----------ERMAHVEELRQINQDINTLENIIKQAESERNK- 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 355666778899999999999999999999887654 44444444555555555544444444444443
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 004170 604 SMARAWAEDEAKRAREQAKALEGARDRW 631 (770)
Q Consensus 604 ~m~R~W~EdEA~~~~e~A~vLeea~~rW 631 (770)
.++.+.+.++.-.-|..-.++=
T Consensus 79 ------~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 79 ------RQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444433333
No 120
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=46.00 E-value=2.1e+02 Score=32.54 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=46.4
Q ss_pred hhcceehhhHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcE
Q 004170 562 MSNKVEISYEKERINMLRKEAENEN----QEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIK 637 (770)
Q Consensus 562 ~s~~~~~~~E~~~l~kl~~~~e~~~----~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~ 637 (770)
-.+|...+|+-+.|...+.+.+... -+-.++-+++|++|-+.++|-.=.+.=-.--+.|-..||+ +|..
T Consensus 139 DNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee-------~Gl~ 211 (405)
T KOG2010|consen 139 DNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE-------HGLV 211 (405)
T ss_pred cccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCeE
Confidence 3566666776665555555444332 3345677889999999999865443322222334455655 8887
Q ss_pred EEEcCCcc
Q 004170 638 VVVDKDLR 645 (770)
Q Consensus 638 v~vd~~~~ 645 (770)
++-++--+
T Consensus 212 ~I~~~t~~ 219 (405)
T KOG2010|consen 212 IIPDGTPN 219 (405)
T ss_pred eccCCCCC
Confidence 77765443
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.56 E-value=9e+02 Score=32.08 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhccchhhhHHH-------hhHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 004170 460 NEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMER-------EKIDVVEKMAEEARQELERLRA---EREVD 529 (770)
Q Consensus 460 ~eEl~r~EAe~~A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR-------~~~~~vek~~~~~~~ele~~r~---~re~e 529 (770)
..|+..+++-.-=-.|++...++..+.+..|...=......-| ....+++..+.+...++.++.+ +-+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~ee 523 (1317)
T KOG0612|consen 444 VNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEE 523 (1317)
T ss_pred hhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHH
Q 004170 530 KIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ---EIARLQYELEVERKALSMA 606 (770)
Q Consensus 530 ~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~---~~~~~k~~LE~Ek~AL~m~ 606 (770)
+..+.+....+--.++-+..||.+++++.+.+-.+-...-.=......+.+.++...+ .+.+.-..||-.+..|+-.
T Consensus 524 le~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~ 603 (1317)
T KOG0612|consen 524 LEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKE 603 (1317)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHhHHHHHHHHHHHHHHHHHHhHH
Q 004170 607 ----RAWAEDEAKRAREQAKALEGARDR 630 (770)
Q Consensus 607 ----R~W~EdEA~~~~e~A~vLeea~~r 630 (770)
|+-+|.+.+.-.+.-....++..+
T Consensus 604 ~~~~~~~~e~~~~~~~~~~e~~~~l~~~ 631 (1317)
T KOG0612|consen 604 NKKLRSELEKERRQRTEISEIIAELKEE 631 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
No 122
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.35 E-value=6.7e+02 Score=30.53 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004170 569 SYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 569 ~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLee 626 (770)
+..++.+..+-..++.+++.+..++.+|--=-+=..|.|-=+|+|-++.+.+++-||+
T Consensus 442 ~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~ 499 (581)
T KOG0995|consen 442 ETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEE 499 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443211111234566677777777777777766
No 123
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=44.32 E-value=4.3e+02 Score=28.31 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004170 575 INMLRKEAENENQEIARLQYELEVERKALSMARA 608 (770)
Q Consensus 575 l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~ 608 (770)
-+..+.+++....++..++..+......|.-.+.
T Consensus 184 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~ 217 (301)
T PF14362_consen 184 YKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIA 217 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3344445555556666666666666666654444
No 124
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=44.20 E-value=92 Score=37.57 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHH
Q 004170 535 KERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 574 (770)
Q Consensus 535 Keraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~ 574 (770)
.||-.|+||+|-|-+-|-| +++|--+|+.|+.|+.+
T Consensus 653 ~erlrle~qRQrLERErmE----rERLEreRM~ve~eRr~ 688 (940)
T KOG4661|consen 653 AERLRLERQRQRLERERME----RERLERERMKVEEERRD 688 (940)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 3555689999988776655 45777788888776543
No 125
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=44.14 E-value=2.7e+02 Score=31.04 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHh----hhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004170 538 AAIESEMEILSKLRREVEEQLESL----MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVE 599 (770)
Q Consensus 538 aa~e~e~~~L~~lr~evde~~q~l----~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~E 599 (770)
++|..|++-|+.....++-.-|+| ...-..|.+=...|....+.++.-.+++.++|++||-=
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444443333332 23344444555556666666666666677777766643
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.60 E-value=2e+02 Score=36.73 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhHH
Q 004170 616 RAREQAKALEGARDR 630 (770)
Q Consensus 616 ~~~e~A~vLeea~~r 630 (770)
-..+++.+|..|.+.
T Consensus 777 ~~~~~~~~lk~a~~~ 791 (1072)
T KOG0979|consen 777 FLEAREDLLKTALED 791 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334556666665543
No 127
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=43.37 E-value=3.5e+02 Score=26.95 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Q 004170 512 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ 557 (770)
Q Consensus 512 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~ 557 (770)
|+....|-..+...-|+-+.+|++=|..+-.-.++|.++|+.....
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~ 89 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555566666666666666666666555433
No 128
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=43.35 E-value=87 Score=34.72 Aligned_cols=62 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred hhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 004170 561 LMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 629 (770)
Q Consensus 561 l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~ 629 (770)
|--..|-|-.=|-+|-.-...++...-+|.+||+.|- +|=-.|+|+|.-|+.+|- +|.|||.
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~------RMrEDWIEEECHRVEAQL-ALKEARk 124 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLA------RMREDWIEEECHRVEAQL-ALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHH
No 129
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.17 E-value=5.1e+02 Score=28.83 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=52.9
Q ss_pred HHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhHHHHH
Q 004170 479 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREV---DKIALMKERAAIESEMEILSKLRREVE 555 (770)
Q Consensus 479 ~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~---e~~~llKeraa~e~e~~~L~~lr~evd 555 (770)
++.+.++ +++ =-|+-++ -.--...+++.++....+.+.|...-+. -+..+.+..+.+..|...|..+..|++
T Consensus 125 ~aRl~ak--~~W-YeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 125 FARLEAK--KMW-YEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHH--HHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444443 566 3455443 3334444555555555555555432222 222455556666666666666666553
Q ss_pred HHH-HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004170 556 EQL-ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 556 e~~-q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
.-= .-|..-|-++......++..+++++..++++.++...++
T Consensus 200 ~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 200 DCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 310 011112233444444444444444444444444444444
No 130
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.93 E-value=4.8e+02 Score=30.80 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004170 537 RAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYE 595 (770)
Q Consensus 537 raa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~ 595 (770)
|+.||.=+--|++-..+--|-+++++-+++-+--|-.|+|.++..-=.+.+++++.-++
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445545555555555556666666666666666666665444433445555554443
No 131
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.66 E-value=5.6e+02 Score=29.14 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=36.5
Q ss_pred hhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004170 488 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALM 534 (770)
Q Consensus 488 gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~ll 534 (770)
-|. +-|+--+..-+.....++..+.+++..|+++..+..+.+..+-
T Consensus 213 ~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 213 ADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred CCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344 6777777778888999999999999999999888777665443
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=42.57 E-value=6.9e+02 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHhHHHHHHH
Q 004170 572 KERINMLRKEAENEN----QEIARLQYELEVE 599 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~----~~~~~~k~~LE~E 599 (770)
+.++|.|+.+|++.. ++|.+++.....+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRD 234 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 344555555555544 5555555444443
No 133
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=42.19 E-value=1.7e+02 Score=35.99 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=65.9
Q ss_pred Cccccccccchhhhcc-----cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 004170 643 DLREESDAAVMWVNAG-----KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIH---KILLFISNLKKWASKAS 714 (770)
Q Consensus 643 ~~~~~~~~~~~w~~~~-----~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~---~i~~~i~~~~~~~~~~~ 714 (770)
.|.+++-.-..|.|+. +.-+.+++=.++-+|+-||+....+++.-..+.+..+++ ++..=|..||.-+..+.
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3555665677898872 222234444578999999999999999776666666655 33334555666666666
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 004170 715 MRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 762 (770)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~ 762 (770)
.+...++... .++..... +++. ...-.+..|+=++.|++.+.
T Consensus 84 ~~~~~v~~~~-~~~e~~t~---~s~~--~L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 84 EQMASVQEEI-KAVEQDTA---QSMA--QLAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHHHH-hhhhccHH---HHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6665555542 22222111 1111 12224555666777776654
No 134
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=42.03 E-value=4.7e+02 Score=28.13 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=6.4
Q ss_pred hcCcEEEEcC
Q 004170 633 RQGIKVVVDK 642 (770)
Q Consensus 633 ~~gi~v~vd~ 642 (770)
++|.-+|-|+
T Consensus 280 ~RGYaiv~~~ 289 (319)
T PF02601_consen 280 KRGYAIVRDK 289 (319)
T ss_pred hCceEEEECC
Confidence 5677776643
No 135
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.36 E-value=3.3e+02 Score=30.09 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 004170 696 IHKILLFISNLKKWA 710 (770)
Q Consensus 696 ~~~i~~~i~~~~~~~ 710 (770)
|..++..+..|.+++
T Consensus 242 m~~~L~~~~q~~~~~ 256 (314)
T PF04111_consen 242 MVAFLDCLQQLAEFV 256 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.33 E-value=1.5e+02 Score=31.15 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 004170 513 EEARQELERLRAE 525 (770)
Q Consensus 513 ~~~~~ele~~r~~ 525 (770)
.++..||++++++
T Consensus 96 p~le~el~~l~~~ 108 (206)
T PRK10884 96 PDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666643
No 137
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=41.01 E-value=1.5e+02 Score=29.02 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhh
Q 004170 576 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWV 655 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~ 655 (770)
..-..++-.-+.++.++...+..|..+ ++.|.+.+++.-+.+-+.|+..-..|-.....--...-.-+-...-+.|+
T Consensus 6 ~~al~ki~~l~~~~~~i~~~~~~~I~~---i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~e~~k~Ks~~l~~G~v~~R 82 (149)
T PF07352_consen 6 DWALRKIAELQREIARIEAEANDEIAR---IKEWYEAEIAPLQNRIEYLEGLLQAYAEANRDELTKKKSLKLPFGTVGFR 82 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHCTHHHH-----EE-SS-EE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHhcccceEEEcCCeeEEEE
Confidence 334445555566666666777666554 46899999999999999999999999865542222333344445678888
Q ss_pred hcccccchHHHHHhHHHHHHHHHHh
Q 004170 656 NAGKQFSVDQTVSRAQSLVDKLKAM 680 (770)
Q Consensus 656 ~~~~~~~~~~~~~ra~~~~~k~~~~ 680 (770)
.......+. --+.|++.||.+
T Consensus 83 ~~~~~~~~~----~~~~vl~~Lk~~ 103 (149)
T PF07352_consen 83 KSTPKVKVR----DEEKVLEWLKEN 103 (149)
T ss_dssp --------T-----HHHHHHHHHHC
T ss_pred ecCCcccCC----CHHHHHHHHHHc
Confidence 776655441 456778888776
No 138
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.89 E-value=9.6e+02 Score=31.38 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=29.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKI------ALMKERAAIESEMEILSKLRREVEEQLESLMS 563 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~------~llKeraa~e~e~~~L~~lr~evde~~q~l~s 563 (770)
+++...++.-++++..+|+++....++-.. .|++.=..|..-.+-+..|+..|++....+..
T Consensus 750 ~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~ 817 (1311)
T TIGR00606 750 RNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG 817 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555555555555544443332111 12222223344455566667777766665553
No 139
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=40.82 E-value=5.9e+02 Score=29.82 Aligned_cols=123 Identities=21% Similarity=0.248 Sum_probs=65.9
Q ss_pred cchhhHHh--hhHHHHHHHHHhHHHHHH-HHHHHHhhhhhhccchhhhHHHhhHHH----HHHHHHHHHHHHHHHH---H
Q 004170 455 ASDAVNEE--LQRIEAESAAENAVSEHS-ALVAEVEKEINESFEKELSMEREKIDV----VEKMAEEARQELERLR---A 524 (770)
Q Consensus 455 ~~e~v~eE--l~r~EAe~~A~~Av~a~~-~l~~~~~gdi~~~F~~~~~~eR~~~~~----vek~~~~~~~ele~~r---~ 524 (770)
.++.+..| +.+.|....++|.-.... .|.++ -.|+ ++|..++..|=+...+ ++........+|+-+. .
T Consensus 45 ~s~~ir~~sr~l~~e~~~~t~~~q~dtt~~L~~R-~~di-~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ 122 (421)
T KOG2685|consen 45 QSERIRRESRLLVNETNALTDKMQRDTTEKLGQR-LDDV-NFWKGELDRELEDLAAEIDDLLHEKRRLERALNALALPLS 122 (421)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 34444444 445677778888776643 34444 4778 6888777665443332 2222222222222110 0
Q ss_pred H-------HHHH----------HHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHH
Q 004170 525 E-------REVD----------KIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQ 587 (770)
Q Consensus 525 ~-------re~e----------~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~ 587 (770)
. |++- -.+|+||-..|++=+++|.+.=.++.+|+..+-+ -=++|..|++.|.+
T Consensus 123 ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~~a~~Ql~~nr~----------ar~~Le~Dl~dK~e 192 (421)
T KOG2685|consen 123 IAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLERAEEQLRLNRE----------ARQNLERDLSDKQE 192 (421)
T ss_pred HHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHhhhhhhhhh
Confidence 1 2111 1367777777777777777777777777655422 23455566666655
Q ss_pred HH
Q 004170 588 EI 589 (770)
Q Consensus 588 ~~ 589 (770)
++
T Consensus 193 A~ 194 (421)
T KOG2685|consen 193 AY 194 (421)
T ss_pred hh
Confidence 43
No 140
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=40.82 E-value=3.9e+02 Score=31.14 Aligned_cols=67 Identities=28% Similarity=0.432 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 534 MKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 534 lKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
.|||+.-|.|-..- +|+-|-.-|-|...-+|+-.-.|++.|. +++|.+..++.+++-.+.+--.||.
T Consensus 321 akek~~KEAqarea-klqaec~rQ~qlaLEEKaaLrkerd~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 321 AKEKAGKEAQAREA-KLQAECARQTQLALEEKAALRKERDSLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45555555554332 7888888888888888877777777654 5677777888888888888777775
No 141
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=40.74 E-value=3.8e+02 Score=28.96 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=3.0
Q ss_pred ccHHHHHHH
Q 004170 283 CIRREYARW 291 (770)
Q Consensus 283 ITRaEFArw 291 (770)
||=..|+.+
T Consensus 5 vtG~~L~~L 13 (297)
T PF02841_consen 5 VTGPMLAEL 13 (297)
T ss_dssp -BHHHHHHH
T ss_pred cccHHHHHH
Confidence 333333333
No 142
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.35 E-value=1.3e+02 Score=36.32 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004170 573 ERINMLRKEAENENQEIARLQYELEV 598 (770)
Q Consensus 573 ~~l~kl~~~~e~~~~~~~~~k~~LE~ 598 (770)
.+++.|++.+.++++++++||-++|.
T Consensus 114 ~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 114 TKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 45677777888888888888777664
No 143
>PRK03918 chromosome segregation protein; Provisional
Probab=39.99 E-value=7.7e+02 Score=30.03 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004170 532 ALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYE 595 (770)
Q Consensus 532 ~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~ 595 (770)
.+.++...++.+.+.|......+..+++.|-..+-++..-+..+++|..+++.-.+.+.+++.+
T Consensus 204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~e 267 (880)
T PRK03918 204 EVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444333333344444444433333333333333
No 144
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=39.77 E-value=7.2e+02 Score=29.61 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 004170 464 QRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEK-MAEEARQELERLRAEREVDKIALMKERAAIES 542 (770)
Q Consensus 464 ~r~EAe~~A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek-~~~~~~~ele~~r~~re~e~~~llKeraa~e~ 542 (770)
+.++...|.+.-|.. +|.....+++ -++..|--.+++...-+. .+++++.++++...+.. +++...+.
T Consensus 170 s~vdt~~i~~~~vv~--~l~~~~dk~~--~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~-------k~kkkae~ 238 (489)
T PF05262_consen 170 SDVDTDEISDEKVVQ--ELREDKDKGI--DKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEAD-------KEKKKAEK 238 (489)
T ss_pred cccchhhcccHHHHH--HHhhccccCh--hhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 444555555443322 4444433334 234444433333333222 23444444443333322 22233344
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 004170 543 EMEILSKLRREVEEQLES 560 (770)
Q Consensus 543 e~~~L~~lr~evde~~q~ 560 (770)
+.+.+-.-|.++++.+|.
T Consensus 239 ~q~e~dkqr~~ae~kqqe 256 (489)
T PF05262_consen 239 KQQELDKQRDEAEQKQQE 256 (489)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 444444444444444444
No 145
>PRK10404 hypothetical protein; Provisional
Probab=39.72 E-value=1.5e+02 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=36.5
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 004170 659 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMR 716 (770)
Q Consensus 659 ~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 716 (770)
+++.-+....--+.|++-++.|.......+.+-+..+-.++...+...|.+.+++...
T Consensus 3 ~~~~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~ 60 (101)
T PRK10404 3 NQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDS 60 (101)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555555556777777777666666666666666666666666666665555443
No 146
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=39.15 E-value=8.3e+02 Score=30.12 Aligned_cols=70 Identities=20% Similarity=0.297 Sum_probs=43.4
Q ss_pred HHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004170 554 VEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 554 vde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLee 626 (770)
++..-+.|...+-+...-++.+.++..+++...+.+-.++..|+.+.+-|.--. +++..|.+-|.+++|-
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~---~e~~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK---KEKEERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 333334444444445555666677777777777777777777777766665443 3445556778888876
No 147
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.95 E-value=7.3e+02 Score=29.46 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=105.6
Q ss_pred chhhHHhhhHHHHHHHHHhHHHHHHHHHHHH------hhhhhhccchhhhHHHhhHHHHHHH---HH--HHHHHHHHHHH
Q 004170 456 SDAVNEELQRIEAESAAENAVSEHSALVAEV------EKEINESFEKELSMEREKIDVVEKM---AE--EARQELERLRA 524 (770)
Q Consensus 456 ~e~v~eEl~r~EAe~~A~~Av~a~~~l~~~~------~gdi~~~F~~~~~~eR~~~~~vek~---~~--~~~~ele~~r~ 524 (770)
.+...+...+++|..+..........+.... -.+++.-|+.++..=+.-...+.+- +. ..-.++++++.
T Consensus 180 f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~ 259 (560)
T PF06160_consen 180 FEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEE 259 (560)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence 3444444556667776666666544444432 2333344444433223222221111 11 24556667766
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 525 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 525 ~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
..+..+..| ..-.++.=.+.+..+..++|.+|+.|-.+- .=+..+++....+....+.+.+--..|..|-+-|+
T Consensus 260 ~l~~~~~~L--~~l~l~~~~~~~~~i~~~Id~lYd~le~E~----~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~ 333 (560)
T PF06160_consen 260 QLEEALALL--KNLELDEVEEENEEIEERIDQLYDILEKEV----EAKKYVEKNLKELYEYLEHAKEQNKELKEELERVS 333 (560)
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554 556777778888999999999999886542 22556777777777777888888888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHH
Q 004170 605 MARAWAEDEAKRAREQAKALEGARDRW 631 (770)
Q Consensus 605 m~R~W~EdEA~~~~e~A~vLeea~~rW 631 (770)
.-=.+-++|..+.+.-.+=|+....+.
T Consensus 334 ~sY~L~~~e~~~~~~l~~~l~~l~~~~ 360 (560)
T PF06160_consen 334 QSYTLNHNELEIVRELEKQLKELEKRY 360 (560)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 887777778777777666665555444
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.89 E-value=1.1e+03 Score=31.33 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=10.9
Q ss_pred CCCCccHHHHHHHH
Q 004170 279 PGDLCIRREYARWL 292 (770)
Q Consensus 279 Pn~pITRaEFArwL 292 (770)
.+.|+||.+|..+|
T Consensus 139 ~~~plt~~~l~~~l 152 (1353)
T TIGR02680 139 AGIPLTRDRLKEAL 152 (1353)
T ss_pred CCccCCHHHHHHHh
Confidence 37888998888765
No 149
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=38.33 E-value=4.7e+02 Score=32.07 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=39.3
Q ss_pred CcCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCCCCccCCCCCCCChHHHHHHHHcCCcccccccccCCCC
Q 004170 276 DVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNE 355 (770)
Q Consensus 276 ~F~Pn~pITRaEFArwLVRAln~L~R~p~~kI~P~~~i~~st~~AF~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~ 355 (770)
+....+-+.|+|.++|+... + .|. ..=+||+| -| ..+..++. +.
T Consensus 268 ~~~S~r~~~~~eVve~I~~l-G----------~Pv--------vVAtDVtp-~P--~~V~KiAa-----sf--------- 311 (652)
T COG2433 268 DLESRRGIDRSEVVEFISEL-G----------KPV--------VVATDVTP-AP--ETVKKIAA-----SF--------- 311 (652)
T ss_pred eeeccccCCHHHHHHHHHHc-C----------Cce--------EEEccCCC-Ch--HHHHHHHH-----Hc---------
Confidence 45677788899999988663 2 132 23468855 34 45555443 22
Q ss_pred CCCCcccCCCCcCcHHHHHH
Q 004170 356 EPGPIFFLPESPLSRQDLVS 375 (770)
Q Consensus 356 ~dG~~tF~PD~PITRQELAa 375 (770)
|...|-|++-||=+|=..
T Consensus 312 --~A~ly~P~~dLsveEK~~ 329 (652)
T COG2433 312 --NAVLYTPDRDLSVEEKQE 329 (652)
T ss_pred --CCcccCCcccCCHHHHHH
Confidence 345799999999888553
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.26 E-value=2.4e+02 Score=27.38 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHH
Q 004170 511 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAE 583 (770)
Q Consensus 511 ~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e 583 (770)
.+.+-..-|+..|..-..|+..|+++-..+......+..|+.++.+.-++.-+--.-+=-=-+.++.|+.|++
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
No 151
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.16 E-value=1.4e+02 Score=28.80 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhhh
Q 004170 693 NTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVAG 755 (770)
Q Consensus 693 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 755 (770)
+.++.-++.|++.+-+-....+.-+++=-+...+++...+.+++....+-+..+..++|-.++
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~ 73 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAAD 73 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444444455554443333333333333333345666667777777777777777777766554
No 152
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=37.84 E-value=2.2e+02 Score=28.88 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004170 572 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQ 620 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~ 620 (770)
+.++..|..++..+...+..++ -|--||.|--.=+|+..++.++-
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~----DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQ----DELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333 33344555445555555554443
No 153
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.71 E-value=1.8e+02 Score=25.21 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 574 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 621 (770)
Q Consensus 574 ~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A 621 (770)
+|++|.++++.=+..|.+|..+.- +|+-.-.=+.+||.|+.+|-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~----~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN----ALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 566777776666666655555444 44433345678999998874
No 154
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.66 E-value=1.1e+02 Score=34.76 Aligned_cols=11 Identities=0% Similarity=0.238 Sum_probs=6.9
Q ss_pred HHHHHHHhHHH
Q 004170 602 ALSMARAWAED 612 (770)
Q Consensus 602 AL~m~R~W~Ed 612 (770)
...+|-+|+++
T Consensus 268 niDIL~~k~~e 278 (365)
T KOG2391|consen 268 NIDILKSKVRE 278 (365)
T ss_pred hhHHHHHHHHH
Confidence 34566777765
No 155
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=37.56 E-value=1.2e+02 Score=28.61 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 004170 503 EKIDVVEKMAEEARQELERLRAEREV-------DKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 575 (770)
Q Consensus 503 ~~~~~vek~~~~~~~ele~~r~~re~-------e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l 575 (770)
+....=.+.+..+..|||++|.--.- =..-|=+|||+++-| --|++|++-+|.. |+.+-|
T Consensus 6 ~~v~~er~~~~~L~~ELEeER~AaAsAA~EAMaMI~RLQ~EKAa~~mE-----------A~Qy~Rm~EEk~~--yD~e~i 72 (94)
T PF04576_consen 6 RAVEAERKALAALYAELEEERSAAASAASEAMAMILRLQEEKAAVEME-----------ARQYQRMAEEKAE--YDQEAI 72 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHh--hHHHHH
Confidence 33344445566666777776642211 111233444444322 1478888888765 566778
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 004170 576 NMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE 597 (770)
+.|..-+-.+..++..|..+||
T Consensus 73 e~L~~~l~~rE~e~~~Le~ele 94 (94)
T PF04576_consen 73 ESLKDILYKREKEIQSLEAELE 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8888777777777777766653
No 156
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=37.33 E-value=3.6e+02 Score=25.44 Aligned_cols=97 Identities=9% Similarity=0.201 Sum_probs=54.6
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HH-HHH
Q 004170 662 SVDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKD-------AT-ILK 727 (770)
Q Consensus 662 ~~~~~~~ra~~~~~k~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~-------~~-~~~ 727 (770)
.|...|.+-.+.++.|..+-..+. ...+.-|+.++..|..++..++..+..+......... .+ ..-
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q 89 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQ 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 455556666666666666655544 2246666777777777777777777666655433210 00 122
Q ss_pred hhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 004170 728 AKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVE 762 (770)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~ 762 (770)
.....+.++....+|...= .++.+.||+-+.
T Consensus 90 ~~~L~~~f~~~m~~fq~~Q----~~~~~~~k~~i~ 120 (151)
T cd00179 90 HSGLSKKFVEVMTEFNKAQ----RKYRERYKERIQ 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 2333455555566665554 566677776443
No 157
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=37.23 E-value=5e+02 Score=27.08 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004170 538 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRA 617 (770)
Q Consensus 538 aa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~ 617 (770)
|+|.--.++|..|..||-|-=.-+-.++..+..=+.+++--..-...-++.+..|+.-|+.=+.-|..++.=++-=-...
T Consensus 60 AaL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el 139 (188)
T PF05335_consen 60 AALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQEL 139 (188)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665555544444444445555555555555555555555555555555555555444444444
Q ss_pred HHHHHHHHHHhHH
Q 004170 618 REQAKALEGARDR 630 (770)
Q Consensus 618 ~e~A~vLeea~~r 630 (770)
.|.-..||.|++|
T Consensus 140 ~eK~qLLeaAk~R 152 (188)
T PF05335_consen 140 AEKTQLLEAAKRR 152 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555555
No 158
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=37.14 E-value=2.9e+02 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=33.7
Q ss_pred cccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Q 004170 659 KQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLF 702 (770)
Q Consensus 659 ~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~ 702 (770)
=+..|+++.+..+.|+.|-+.++.||+||.- -|+.+..-|..+
T Consensus 43 l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~-tld~vf~aV~dl 85 (139)
T COG4768 43 LTSQVDGITHETEELLHKTNTLAEDVQGKVA-TLDPVFDAVKDL 85 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-hHhHHHHHHHHH
Confidence 3567899999999999999999999999974 455555554443
No 159
>PF14992 TMCO5: TMCO5 family
Probab=36.55 E-value=3.4e+02 Score=30.13 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHhHHHHHHHHHHhhhccee----hhhHHHHHHHHHHHHHHHHHHH
Q 004170 518 ELERLRAEREVDKIALMKERAAIESEMEIL----SKLRREVEEQLESLMSNKVE----ISYEKERINMLRKEAENENQEI 589 (770)
Q Consensus 518 ele~~r~~re~e~~~llKeraa~e~e~~~L----~~lr~evde~~q~l~s~~~~----~~~E~~~l~kl~~~~e~~~~~~ 589 (770)
++...-.+++.++-.|-.+.+-+|.+++.| ..|.++++++...+-.++-. .-.=+.++|+++..+......+
T Consensus 53 ~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei 132 (280)
T PF14992_consen 53 EEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEI 132 (280)
T ss_pred HHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHH
Confidence 333344467777777778889999999999 89999999998886444321 1222478899998888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHhH
Q 004170 590 ARLQYELEVERKALSMARAWA 610 (770)
Q Consensus 590 ~~~k~~LE~Ek~AL~m~R~W~ 610 (770)
..+.+...--.....=+..|+
T Consensus 133 ~kve~d~~~v~~l~eDq~~~i 153 (280)
T PF14992_consen 133 AKVEDDYQQVHQLCEDQANEI 153 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 877654433333333333333
No 160
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=36.04 E-value=5.6e+02 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 004170 604 SMARAWAEDEAKRAREQAKA 623 (770)
Q Consensus 604 ~m~R~W~EdEA~~~~e~A~v 623 (770)
+++|.+.+.+...-++.-..
T Consensus 116 ~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 116 TLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHH
Confidence 34555555555555553333
No 161
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.88 E-value=2.5e+02 Score=30.96 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004170 541 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 541 e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
..++..|..-+.|++++++.+..++-++..++...++....++.++.++...+-+.+
T Consensus 25 ~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~ 81 (344)
T PF12777_consen 25 EEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAE 81 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544444444444444444455555544444443333
No 162
>PRK10869 recombination and repair protein; Provisional
Probab=35.68 E-value=6.9e+02 Score=29.70 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=14.6
Q ss_pred chhhHHhhhHHH-HHHHHHhHHHHHHHH
Q 004170 456 SDAVNEELQRIE-AESAAENAVSEHSAL 482 (770)
Q Consensus 456 ~e~v~eEl~r~E-Ae~~A~~Av~a~~~l 482 (770)
-+.+.+|..++. ++.+...+-.+...|
T Consensus 207 ~eeL~~e~~~L~n~e~i~~~~~~~~~~L 234 (553)
T PRK10869 207 FEQIDEEYKRLANSGQLLTTSQNALQLL 234 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666655 666665555554444
No 163
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.74 E-value=1.1e+03 Score=30.48 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 004170 573 ERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 573 ~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
+|.+-|+.++|.-.+.+..+..+||
T Consensus 325 ERaesLQ~eve~lkEr~deletdlE 349 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554444
No 164
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=34.10 E-value=1.6e+02 Score=26.76 Aligned_cols=98 Identities=9% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHhHHHHHHHHHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 004170 664 DQTVSRAQSLVDKLKAMANDVS-GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEF 742 (770)
Q Consensus 664 ~~~~~ra~~~~~k~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (770)
+..+..-.+-++-.+.++.++. ...+.++.++++.=..++..|...+.+.+-...+-+.. ...+......+
T Consensus 7 n~Ll~~~~d~~~~Y~~a~~~~~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~--------~g~~~r~~~~i 78 (111)
T PF09537_consen 7 NDLLKGLHDGIEGYEKAAEKAEDPELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSF--------KGALHRAWMDI 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HH--------CHHHH-TTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCH--------HHHHHHHHHHH
Confidence 3444444455555566666666 66677777777777777777777777777554433222 12233334455
Q ss_pred hhhhcccchh-hhhhhhhhHHhhhhhcc
Q 004170 743 RSNLTEGAKR-VAGDCREGVEKLTQRFK 769 (770)
Q Consensus 743 ~~~~~~~~k~-~~~~c~~~v~k~~~~fk 769 (770)
.+.+...... +.+.|..|=.++-+.|+
T Consensus 79 k~~~~~~d~~aiL~~~~~gE~~~~~~y~ 106 (111)
T PF09537_consen 79 KSALGGDDDEAILEECERGEDMALEAYE 106 (111)
T ss_dssp HHS-----H-------------------
T ss_pred HHHhcCCCccchhhhhhhhhhhhhhhcc
Confidence 5555555554 88899888888777765
No 165
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.05 E-value=8.5e+02 Score=28.74 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=16.0
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHH
Q 004170 497 ELSMEREKIDVVEKMAEEARQELERL 522 (770)
Q Consensus 497 ~~~~eR~~~~~vek~~~~~~~ele~~ 522 (770)
++..++.+..-.||+.+.+..=++-+
T Consensus 213 ~L~~e~~~L~n~e~i~~~~~~~~~~L 238 (563)
T TIGR00634 213 ALEAEQQRLSNLEKLRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 35566666666777766655555544
No 166
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=33.63 E-value=9.3e+02 Score=30.76 Aligned_cols=63 Identities=25% Similarity=0.171 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHH
Q 004170 507 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKER 574 (770)
Q Consensus 507 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~ 574 (770)
.+.|.+++....|.--+..+.+|..-+.|-+-.+|.|+ -|.|-||+-++=.-++-..-.|.+.
T Consensus 900 ~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER-----~rrEaeek~rre~ee~k~~k~e~e~ 962 (1259)
T KOG0163|consen 900 VAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAER-----KRREAEEKRRREEEEKKRAKAEMET 962 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555454433344555555555555555443 4666666666555444444444433
No 167
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=33.53 E-value=3.6e+02 Score=33.64 Aligned_cols=79 Identities=32% Similarity=0.362 Sum_probs=48.1
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---
Q 004170 531 IALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR--- 607 (770)
Q Consensus 531 ~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R--- 607 (770)
..|--|||+++.+-.-+-.=|.-||.|.+- -...-+.-..+|+...+.+-.+--+.|-|+.|--|+-
T Consensus 392 ~al~~era~l~a~w~rv~egrr~v~~mv~~----------grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l 461 (828)
T PF04094_consen 392 QALAAERAALDAEWARVDEGRRAVDAMVEV----------GRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVL 461 (828)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788887776666666666666542 2222333455556666666666666666665544432
Q ss_pred ------------HhHHHHHHHHHH
Q 004170 608 ------------AWAEDEAKRARE 619 (770)
Q Consensus 608 ------------~W~EdEA~~~~e 619 (770)
+|+||=+||...
T Consensus 462 ~ea~~~irlqy~~~~~~l~k~~~~ 485 (828)
T PF04094_consen 462 DEALGDIRLQYEAHAEDLAKRVDD 485 (828)
T ss_pred HhhccccccccchHHHHHHHHHHh
Confidence 799888887655
No 168
>PRK15396 murein lipoprotein; Provisional
Probab=33.51 E-value=1.6e+02 Score=26.89 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 574 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 621 (770)
Q Consensus 574 ~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A 621 (770)
.+++|+++++.=+..+.++ ..+..+++..--=+.+||.|+.+|=
T Consensus 26 kvd~LssqV~~L~~kvdql----~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQL----SNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666655544444444 4444455554445889999998873
No 169
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.32 E-value=8.5e+02 Score=30.20 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHhhhcceeh-hhHHHHHHH
Q 004170 549 KLRREVEEQLESLMSNKVEI-SYEKERINM 577 (770)
Q Consensus 549 ~lr~evde~~q~l~s~~~~~-~~E~~~l~k 577 (770)
.|..-++.+++.+....=.. .+|++..++
T Consensus 611 ~L~~R~~~vl~~l~~~~P~LS~AEr~~~~E 640 (717)
T PF10168_consen 611 KLMKRVDRVLQLLNSQLPVLSEAEREFKKE 640 (717)
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 44555777888775433323 335444333
No 170
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.00 E-value=5.5e+02 Score=27.73 Aligned_cols=15 Identities=13% Similarity=-0.042 Sum_probs=6.9
Q ss_pred ccHHHHHHHHHHhcc
Q 004170 283 CIRREYARWLVSASS 297 (770)
Q Consensus 283 ITRaEFArwLVRAln 297 (770)
+...|-.+.+-+|..
T Consensus 36 ~~e~e~~~A~~~A~~ 50 (297)
T PF02841_consen 36 VAEAENRAAVEKAVE 50 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455444443
No 171
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=31.96 E-value=4.7e+02 Score=25.48 Aligned_cols=10 Identities=40% Similarity=0.790 Sum_probs=5.2
Q ss_pred hHHhhhhhcc
Q 004170 760 GVEKLTQRFK 769 (770)
Q Consensus 760 ~v~k~~~~fk 769 (770)
.+..+.+|||
T Consensus 202 ~L~~~v~~Fk 211 (213)
T PF00015_consen 202 ELQELVDRFK 211 (213)
T ss_dssp CCCHHCHHHC
T ss_pred HHHHHHHhcc
Confidence 3344556665
No 172
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=31.74 E-value=5e+02 Score=25.43 Aligned_cols=57 Identities=32% Similarity=0.514 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcc
Q 004170 508 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNK 565 (770)
Q Consensus 508 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~ 565 (770)
++...+.+..+++..+. |..-.+.+-..+.-+....+++..+..+|.+.|..+....
T Consensus 36 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~~~~~ 92 (198)
T PF01991_consen 36 IEEIIEKAEKEAEQEKE-REISKAELEARRELLEAKQEIIDEVFEEVKEKLKSFSKDP 92 (198)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34444555555544443 2223333444455666666777777777766666666554
No 173
>PRK10807 paraquat-inducible protein B; Provisional
Probab=31.21 E-value=3.4e+02 Score=32.25 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=44.4
Q ss_pred ccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH-HHHHHh
Q 004170 660 QFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSV-QELQQS 738 (770)
Q Consensus 660 ~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 738 (770)
...+++...++..+++|+..|. |+.++..+...+..+++-+.++.+.+.++...+.+.+...+ .++++.
T Consensus 412 ps~l~~l~~~~~~il~kin~lp----------le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~T 481 (547)
T PRK10807 412 SGGLAQIQQKLMEALDKINNLP----------LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKT 481 (547)
T ss_pred CCCHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Confidence 3445777777788888877765 45555555555555555555555555555544444333333 555555
Q ss_pred HHHHhhhhcc
Q 004170 739 TAEFRSNLTE 748 (770)
Q Consensus 739 ~~~~~~~~~~ 748 (770)
..++...+.+
T Consensus 482 L~~l~~~l~~ 491 (547)
T PRK10807 482 LRELNRSMQG 491 (547)
T ss_pred HHHHHHHHhh
Confidence 5555444433
No 174
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=31.12 E-value=2.9e+02 Score=31.16 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004170 541 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 603 (770)
Q Consensus 541 e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL 603 (770)
|.|+|--++-+-|..-.-+.+--+|-....|+++..+-+-++|.++|.-.+.|-.|--|-+-|
T Consensus 151 EQErQKT~q~~~e~~n~qiK~EQEKQKTeqEkQk~~ksqIklEQEkQKT~qeqqkliKeQKDf 213 (398)
T PF05917_consen 151 EQERQKTEQEGIETTNNQIKVEQEKQKTEQEKQKENKSQIKLEQEKQKTEQEQQKLIKEQKDF 213 (398)
T ss_pred HHHHHHHHHHhhhhhHhHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555556666677777777777777777666666555544
No 175
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=31.06 E-value=4e+02 Score=23.99 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcC-Cccccccccc
Q 004170 575 INMLRKEAENENQEIARLQYELE-VERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDK-DLREESDAAV 652 (770)
Q Consensus 575 l~kl~~~~e~~~~~~~~~k~~LE-~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~-~~~~~~~~~~ 652 (770)
|+.|..-+..+++.....++.-- +....+.=+..+..+.|...++|+.-+.+ |=...|..+.... ++.+ .+.+
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e---~i~~lgg~p~~~~~~~~~--~~~~ 75 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAE---RILMLGGKPSGSPVEIPE--IPKP 75 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTS-SSTSHHHHHH--HHSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHH---HHhcCCCCCCCcHHHhhh--hhcc
Confidence 45566666666666655544322 22334444567788888888888877765 3334443222211 1111 1111
Q ss_pred hhhhcccccchHHHHHhH----HHHHHHHHHhhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004170 653 MWVNAGKQFSVDQTVSRA----QSLVDKLKAMANDVS----GKSKEIINTIIHKILLFISNLKKWASKAS 714 (770)
Q Consensus 653 ~w~~~~~~~~~~~~~~ra----~~~~~k~~~~~~~~~----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 714 (770)
.+ -.++.+.+..+ +.+++.++.+..... -...+.+..++.....-+..|+.+..++.
T Consensus 76 ~~-----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~l~ 140 (142)
T PF00210_consen 76 PE-----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLTNLK 140 (142)
T ss_dssp SS-----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 13555555544 555555555555443 35666777777777777777777766554
No 176
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.04 E-value=6e+02 Score=26.13 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhh
Q 004170 478 EHSALVAEVEKEI 490 (770)
Q Consensus 478 a~~~l~~~~~gdi 490 (770)
++|.|+.+++..+
T Consensus 81 ERGlLL~rvrde~ 93 (189)
T PF10211_consen 81 ERGLLLLRVRDEY 93 (189)
T ss_pred HHhHHHHHHHHHH
Confidence 3567777665444
No 177
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.97 E-value=4.8e+02 Score=24.95 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=25.6
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVE 599 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~E 599 (770)
|..++.|+..+.+.|.+.+-..+.+ ..+++..+++.+.+++.+.+..+..+
T Consensus 52 l~~~~~el~~~~~~l~~~~~~ls~~--~~~~~~~~l~~~~~~l~~~~~~~~~~ 102 (158)
T PF03938_consen 52 LQAKQKELQKLQQKLQSQKATLSEE--ERQKRQQELQQKEQELQQFQQQAQQQ 102 (158)
T ss_dssp HHHHHHHHHHHHHHHTTS----SSH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665544433 23444555555555555555444433
No 178
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.64 E-value=7.3e+02 Score=26.95 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004170 572 KERINMLRKEAENENQEIARLQYELEV 598 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~~~~~~~k~~LE~ 598 (770)
+..+..++.++..-+.++.+++..++.
T Consensus 202 ~~~~~~~~~~l~~~~~~l~~~~~~l~~ 228 (423)
T TIGR01843 202 ERERAEAQGELGRLEAELEVLKRQIDE 228 (423)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444555555444455554444443
No 179
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.16 E-value=5.3e+02 Score=30.59 Aligned_cols=61 Identities=25% Similarity=0.310 Sum_probs=42.0
Q ss_pred ccccchHHHHHhHHHHHHHHHHhhhhcc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004170 658 GKQFSVDQTVSRAQSLVDKLKAMANDVS-------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELK 721 (770)
Q Consensus 658 ~~~~~~~~~~~ra~~~~~k~~~~~~~~~-------~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 721 (770)
.|...-++-+.-|....+|||.--..|- |+| |+.|=+||.+.-+.|-+--..++.+.++.+
T Consensus 354 kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss---lDdVD~kIleak~al~evtt~lrErl~RWq 421 (575)
T KOG4403|consen 354 KKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS---LDDVDHKILEAKSALSEVTTLLRERLHRWQ 421 (575)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677888888888888887655544 455 777778888877777666665655555544
No 180
>PRK10404 hypothetical protein; Provisional
Probab=29.86 E-value=4.8e+02 Score=24.62 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 004170 671 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELK 721 (770)
Q Consensus 671 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~ 721 (770)
++|.+-|+.+.+++....+..=+.--.++..|-+.+......+..+..++.
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~ 58 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQAS 58 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555555555544444443333333333333333333333333333333
No 181
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=29.61 E-value=54 Score=29.41 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCcEE-----------------EEcCCccccccccchhhhccccc
Q 004170 610 AEDEAKRAREQAKALEGARDRWERQGIKV-----------------VVDKDLREESDAAVMWVNAGKQF 661 (770)
Q Consensus 610 ~EdEA~~~~e~A~vLeea~~rW~~~gi~v-----------------~vd~~~~~~~~~~~~w~~~~~~~ 661 (770)
.+-+.++.+++..+|.+++..=..+||.+ .|---++...++|-||.--|+.-
T Consensus 12 ~~~~~~~~~e~~~~~~~i~~~~~~~Gis~~el~~~~~~~~~~~~~~~~~~KYr~p~~~g~tWsGrGr~P 80 (93)
T PF00816_consen 12 KEIEERRKQEREEAIAEIRELMAEYGISPEELAFGSAKKKKKRKRAKVPPKYRNPENPGETWSGRGRRP 80 (93)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTT--HHHCHHCCS-----EEEECSSESEEECSSSSEEECSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHhhhhhhccccccccCCCCCeEeecCCCCCEeeccCCCC
Confidence 44566677788889999998888889764 11222344455577998777654
No 182
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=29.46 E-value=2.3e+02 Score=31.68 Aligned_cols=71 Identities=23% Similarity=0.481 Sum_probs=50.7
Q ss_pred hhhhhhccchh-hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 004170 487 EKEINESFEKE-LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMS 563 (770)
Q Consensus 487 ~gdi~~~F~~~-~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s 563 (770)
|.++|+-|-.+ +..-|-| +|++++|.+.++--.-..+++ .|-++|-.|-+|.++..++|-|+-.+++-|+.
T Consensus 95 Qq~vn~aY~sEv~kL~~~~---~ERn~~Er~~~iTt~~qq~ee---~Le~k~~~is~qL~~~~~~r~EL~~~~~~l~~ 166 (385)
T PF15642_consen 95 QQKVNGAYGSEVIKLDRGR---SERNHEERRKKITTSHQQHEE---ALEKKKEDISRQLQVIPKHRVELKQKQDDLTK 166 (385)
T ss_pred HHHHHhhhhHHHHHHHHhH---HHhhHHHHHhhhhhHHHHHHH---HHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 56676666655 5554443 678888888777666655554 45678888889988888888888777776654
No 183
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=29.35 E-value=6.3e+02 Score=28.56 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH-----
Q 004170 511 MAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENE----- 585 (770)
Q Consensus 511 ~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~----- 585 (770)
++..++.+.+++=..|.....+++.. .|++|| +.|+.+||+ +.-++..+..+|+..+.-|..=
T Consensus 28 qL~~~r~~teelIr~rVrq~V~hVqa-----qEreLL----e~v~~rYqR---~y~ema~~L~~LeavLqRir~G~~LVe 95 (324)
T PF12126_consen 28 QLGRARADTEELIRARVRQVVAHVQA-----QERELL----EAVEARYQR---DYEEMAGQLGRLEAVLQRIRTGGALVE 95 (324)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH-----HHHHHH----HHHHHHHHH---HHHHHHHHHhHHHHHHHHHHhHHHHHH
Confidence 34444555555444444444444332 234444 455666654 3444555555555554444322
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHHH
Q 004170 586 -------NQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 586 -------~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
.|++++.+..| |+||.-||
T Consensus 96 kM~~YASDQEVLdMh~Fl---reAL~rLr 121 (324)
T PF12126_consen 96 KMKLYASDQEVLDMHGFL---REALERLR 121 (324)
T ss_pred HHHHhcchHHHHHHHHHH---HHHHHHhh
Confidence 35556666555 56776666
No 184
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=29.25 E-value=5.3e+02 Score=27.13 Aligned_cols=102 Identities=25% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCCCCc----HHHHHHHHH---ccccchhhHHhhhHHHH--HHHHHhHHHH---HHHHHHHH-hhhhhhccchhhhHHHh
Q 004170 437 PDKPVT----NAQAAVALA---IGEASDAVNEELQRIEA--ESAAENAVSE---HSALVAEV-EKEINESFEKELSMERE 503 (770)
Q Consensus 437 PnkPVT----RAEAAAaL~---sG~~~e~v~eEl~r~EA--e~~A~~Av~a---~~~l~~~~-~gdi~~~F~~~~~~eR~ 503 (770)
|..++| +|.||.++. .|..-+-|-+||-|.++ -++..-..-| +.+.-... +|...+-|. +
T Consensus 38 ~~~~lTWvdSLavAAga~arekag~Ti~EIAeelG~TeqTir~hlkgetkAG~lv~etY~~lK~G~~~~~~~-----~-- 110 (182)
T COG1318 38 PYERLTWVDSLAVAAGALAREKAGMTISEIAEELGRTEQTVRNHLKGETKAGQLVRETYEKLKEGGLDAVEV-----E-- 110 (182)
T ss_pred cccccchhhHHHHHHHHHHHHHccCcHHHHHHHhCCCHHHHHHHHhcchhhhhHHHHHHHHHHccCcchHHH-----H--
Confidence 455555 688888887 55556666778888764 3333333222 11111111 222111111 0
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004170 504 KIDVVEKMA---EEARQELERLRAEREVDKIALMKERAAIESEMEI 546 (770)
Q Consensus 504 ~~~~vek~~---~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~ 546 (770)
+.-+++-. .-|..+|.+++.+...-+-++++++..++-=+..
T Consensus 111 -~~~~~~e~l~i~wa~~~l~ki~~~~~~~~ke~~e~k~K~~~~k~~ 155 (182)
T COG1318 111 -IEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGE 155 (182)
T ss_pred -HHHHHhhhhhhHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhc
Confidence 00111111 1256677777777777777777777776654444
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.89 E-value=5.3e+02 Score=24.77 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=61.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
|+-....-+.+.+|....+++=.-+-.....|-+=|+.+..-...+..|+.+++..-..|...+.....++..|++=..+
T Consensus 30 ~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 30 REDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444555555555555555555556666666667777777788888888888888887777777788888777777
Q ss_pred HHHHHHHHHH
Q 004170 582 AENENQEIAR 591 (770)
Q Consensus 582 ~e~~~~~~~~ 591 (770)
++.+.+.+..
T Consensus 110 ~~~r~~dL~~ 119 (132)
T PF07926_consen 110 LEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 186
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=28.84 E-value=1.3e+03 Score=29.17 Aligned_cols=78 Identities=31% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004170 517 QELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 517 ~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
.|.++.|.+-|..+.++-|+=+....|+-.|++-=.+=+.++..|.-.|...-.| +..|...++.-..+..-|||+|
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~---~~~l~~~l~~~eken~~Lkye~ 157 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAE---IEDLMARLESTEKENSSLKYEL 157 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444444444555555555544444444444444333333222 2233334444444444445544
Q ss_pred H
Q 004170 597 E 597 (770)
Q Consensus 597 E 597 (770)
-
T Consensus 158 ~ 158 (769)
T PF05911_consen 158 H 158 (769)
T ss_pred H
Confidence 3
No 187
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=28.72 E-value=5.1e+02 Score=30.22 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 004170 505 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKL 550 (770)
Q Consensus 505 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~l 550 (770)
.++-||.-.||.....+++++....-.-.|-|+||+..|++.|.+-
T Consensus 319 qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 319 QEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777889988888888888999998888877653
No 188
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=28.62 E-value=4.9e+02 Score=30.16 Aligned_cols=50 Identities=38% Similarity=0.375 Sum_probs=35.3
Q ss_pred HHHHHHHhhhh--hhccchhhhHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 004170 480 SALVAEVEKEI--NESFEKELSMEREKIDV----VEKMAEEARQELERLRAEREVD 529 (770)
Q Consensus 480 ~~l~~~~~gdi--~~~F~~~~~~eR~~~~~----vek~~~~~~~ele~~r~~re~e 529 (770)
.+++-++++|- -..-+.+...||+|+.. |||+++|..-|.+.||++++.+
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~re 264 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELERE 264 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554 23456777889998764 8889988888888888866543
No 189
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=28.19 E-value=7e+02 Score=28.36 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhhhccchhhhHHH------hhHHHHHHHHHHHHHH
Q 004170 479 HSALVAEVEKEINESFEKELSMER------EKIDVVEKMAEEARQE 518 (770)
Q Consensus 479 ~~~l~~~~~gdi~~~F~~~~~~eR------~~~~~vek~~~~~~~e 518 (770)
.+++....+.-| ..|+.+.++.| .+-+++||+-+.+.+|
T Consensus 38 DNeVEkean~li-dk~deqiKaKkkLmV~aKkheaL~kl~eSaeqe 82 (421)
T KOG4429|consen 38 DNEVEKEANKLI-DKKDEQIKAKKKLMVLAKKHEALEKLEESAEQE 82 (421)
T ss_pred hhHHHHHHHHHh-hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHh
Confidence 334443334444 56777777776 3455666666665443
No 190
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=27.67 E-value=4.6e+02 Score=27.96 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHhh
Q 004170 616 RAREQAKALEGARDRWER 633 (770)
Q Consensus 616 ~~~e~A~vLeea~~rW~~ 633 (770)
..+++..-.|-+|..|++
T Consensus 81 ~~~e~~~~~e~~r~~fek 98 (228)
T PRK06800 81 HVQQQMKEIEAARQQFQK 98 (228)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566667777777775
No 191
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.52 E-value=9.6e+02 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN 584 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~ 584 (770)
|..|+.++.++..+...+--.|..=+..|+.|+..+..
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 55666666666666655555555555555555555433
No 192
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=27.32 E-value=1e+03 Score=27.61 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHh-------HHHHHHHHHHhhhcceehhhHHHHHH-H--------HHHHHHHHHHHHHH
Q 004170 528 VDKIALMKERAAIESEMEILSKL-------RREVEEQLESLMSNKVEISYEKERIN-M--------LRKEAENENQEIAR 591 (770)
Q Consensus 528 ~e~~~llKeraa~e~e~~~L~~l-------r~evde~~q~l~s~~~~~~~E~~~l~-k--------l~~~~e~~~~~~~~ 591 (770)
+++--.++..+..+|..+.+-.- -+..--|-+.+--+-.++.-|+.|++ + +...++..++++++
T Consensus 52 ~~lqk~i~~~k~~~c~r~~~r~~~~~~~~~~q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk 131 (377)
T KOG2896|consen 52 LELQKSIRLKKDVECKRTELRVKILERLHVEQCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSK 131 (377)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH
Q 004170 592 LQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDR 630 (770)
Q Consensus 592 ~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~r 630 (770)
.++-+|-=+..|...|.=.+-+--+-+-+-+-|.+++.+
T Consensus 132 ~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~ 170 (377)
T KOG2896|consen 132 KRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNE 170 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 193
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=27.30 E-value=5.6e+02 Score=24.52 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=46.2
Q ss_pred HHHhhhhhHHHHHHHHHHHh---HHHHHHHHHHhhhcceehhhH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 531 IALMKERAAIESEMEILSKL---RREVEEQLESLMSNKVEISYE---KERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 531 ~~llKeraa~e~e~~~L~~l---r~evde~~q~l~s~~~~~~~E---~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
..|-+-+..++.+.+-|..| +.+....+.......+.+..= ..-|..|...+....+.|..++..++.-++.+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555 555555454444444443322 344888888888888888888888887666554
No 194
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=27.21 E-value=1.3e+03 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 004170 687 KSKEIINTIIHKILLFISNLKK 708 (770)
Q Consensus 687 ~~~~~~~~~~~~i~~~i~~~~~ 708 (770)
-...||.|.++++-..|..++.
T Consensus 416 ~~~Giipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 416 EDPGIIPRALEKLFRTITSLKS 437 (670)
T ss_pred ccCCccHHHHHHHHHHHHhhcc
Confidence 4788999999999888888875
No 195
>PRK10132 hypothetical protein; Provisional
Probab=27.05 E-value=3.3e+02 Score=26.08 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004170 671 QSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASM 715 (770)
Q Consensus 671 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 715 (770)
..|++-++.|.......+.+=+..+-.++...+...|+..+.+..
T Consensus 22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455555555544444555555566666666666666666664433
No 196
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=8.6e+02 Score=26.63 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 004170 573 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 632 (770)
Q Consensus 573 ~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~ 632 (770)
++|+-|+.-++-..++..+++-.+-.-+.||. ++ .|.+++| -++..-.++|-.=|+
T Consensus 100 ~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~--Ka-~e~~~kR-kQdsa~~~e~a~wy~ 155 (246)
T KOG4657|consen 100 SELEVLRRNLQLLKEEKDDSKEIISQKRQALS--KA-KENAGKR-KQDSADIHEAASWYN 155 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HH-HHHHHHH-HhhhhccHHHHHHHH
Confidence 34444444444444555555555544454541 11 2344555 444444566666676
No 197
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=26.60 E-value=70 Score=24.11 Aligned_cols=14 Identities=43% Similarity=0.833 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHH
Q 004170 607 RAWAEDEAKRAREQ 620 (770)
Q Consensus 607 R~W~EdEA~~~~e~ 620 (770)
|-|.||.||--+++
T Consensus 9 RQwsEeqAk~qq~q 22 (27)
T PF04624_consen 9 RQWSEEQAKIQQAQ 22 (27)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999977664
No 198
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.44 E-value=64 Score=28.28 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhH
Q 004170 597 EVERKALSMARAWAEDEAKRAREQAKAL-EGARD 629 (770)
Q Consensus 597 E~Ek~AL~m~R~W~EdEA~~~~e~A~vL-eea~~ 629 (770)
--|-+-+--++.|++||+|-..+|-+.| -|+.+
T Consensus 12 Rl~paiy~Aia~wA~de~RSiNaQIE~lL~E~lr 45 (63)
T COG4877 12 RLEPAIYAAIAQWAEDEFRSINAQIEILLKEALR 45 (63)
T ss_pred ecCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3344556667999999999999998865 44433
No 199
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.37 E-value=1.6e+03 Score=29.40 Aligned_cols=40 Identities=30% Similarity=0.317 Sum_probs=29.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004170 567 EISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 606 (770)
Q Consensus 567 ~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~ 606 (770)
--+.||+-.|||++++|.+|.++.+|+..-|-=+.=+..+
T Consensus 390 lsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~a 429 (1243)
T KOG0971|consen 390 LSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQA 429 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999998877655433333333
No 200
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=26.31 E-value=8.1e+02 Score=27.47 Aligned_cols=90 Identities=27% Similarity=0.261 Sum_probs=51.8
Q ss_pred ccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHH
Q 004170 493 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK 572 (770)
Q Consensus 493 ~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~ 572 (770)
|.+-+..+=|.|-..+++.++++.+.-..+=.++.++ ++.++ ++|-+|-+.+..+..++|+.-||.
T Consensus 32 f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~----------L~~~~----kerl~~aely~e~~~e~v~~eYe~ 97 (291)
T KOG4466|consen 32 FSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKK----------LDESR----KERLRVAELYREYCVERVEREYEC 97 (291)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH----------HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444556666666665555554444333333333 44443 346678888999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHH
Q 004170 573 ERINMLRKEAENENQEIA-RLQYELE 597 (770)
Q Consensus 573 ~~l~kl~~~~e~~~~~~~-~~k~~LE 597 (770)
+ ++.-.++.|.+...+- +|+++||
T Consensus 98 E-~~aAk~e~E~~~~lLke~l~sele 122 (291)
T KOG4466|consen 98 E-IKAAKKEYESKKKLLKENLISELE 122 (291)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4555555555544332 3445554
No 201
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.29 E-value=1.6e+03 Score=29.44 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=16.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 004170 687 KSKEIINTIIHKILLFISNLKKW 709 (770)
Q Consensus 687 ~~~~~~~~~~~~i~~~i~~~~~~ 709 (770)
+.+++++.+|+-.+.++..|+.-
T Consensus 625 ~~r~~~~~~~e~~q~~~~~~k~~ 647 (1041)
T KOG0243|consen 625 KDRDILSEVLESLQQLQEVLKKD 647 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 56777888888887777777654
No 202
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.29 E-value=3.3e+02 Score=24.08 Aligned_cols=40 Identities=18% Similarity=0.340 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Q 004170 666 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLK 707 (770)
Q Consensus 666 ~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 707 (770)
++++|..|+.+. +..|-.|...+.+...++-|..|+-.++
T Consensus 2 ~l~~Ai~lv~~A--v~~D~~g~y~eA~~lY~~ale~~~~~~k 41 (75)
T cd02684 2 SLEKAIALVVQA--VKKDQRGDAAAALSLYCSALQYFVPALH 41 (75)
T ss_pred cHHHHHHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 567788888776 7788889999999988888888876553
No 203
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=25.93 E-value=6.2e+02 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhccee
Q 004170 541 ESEMEILSKLRREVEEQLESLMSNKVE 567 (770)
Q Consensus 541 e~e~~~L~~lr~evde~~q~l~s~~~~ 567 (770)
++..+-+..|+.+|+|.+..|-.+|+-
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666655554443
No 204
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.43 E-value=1.4e+03 Score=28.70 Aligned_cols=95 Identities=24% Similarity=0.315 Sum_probs=71.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 004170 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
++-..+.|..++-...+++++|.+-+.-...+=|-.+.++.=.+.+.++..||.+|.+.+=--..+|.-=+.+|++|...
T Consensus 328 kesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 328 KESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445678888888999999999999999999999999999999999999999999988766655555555556666655
Q ss_pred HHHHHHHHHHhHHHH
Q 004170 582 AENENQEIARLQYEL 596 (770)
Q Consensus 582 ~e~~~~~~~~~k~~L 596 (770)
+..+-..+..++.-|
T Consensus 408 l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 408 LREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 554444444433333
No 205
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=25.37 E-value=3.3e+02 Score=33.80 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=68.2
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHH
Q 004170 663 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAE 741 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (770)
.+.-+.||..++.+++.+-..|.......++-++.++.+.+..|+.-.-++.+.+.+++.....-+.+...-+.+.+.+
T Consensus 358 f~~h~~rak~~l~~v~~~idsv~~~~~~~~~~~~~~~ne~~~~l~~~~~~~~~~~~~~k~kv~q~~eev~~~vs~~~~e 436 (749)
T KOG0448|consen 358 FEQHLHRAKQYLSKVKLDIDSVSESAEKFRSVIQNELNERLETLKPTVINALLGKRDLKEKVEQLTEEVTFKVSSDLEE 436 (749)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456789999999999999999999999999999999999999999999999999999988777777777666655543
No 206
>PHA02940 hypothetical protein; Provisional
Probab=25.15 E-value=3.7e+02 Score=29.82 Aligned_cols=88 Identities=23% Similarity=0.292 Sum_probs=70.3
Q ss_pred HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004170 547 LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 547 L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLee 626 (770)
|..||+.+-|-...|.--|.-|---.=....|+++++-=+++|.+.-+.--.=|+|+.+.-|-.++-=-.++|++++|--
T Consensus 9 lieL~eKI~eyIkDLedlk~dyd~~dfdaddLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~ 88 (315)
T PHA02940 9 LIELKEKIGEYIKDLEDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSD 88 (315)
T ss_pred hHHHHHHHHHHHHhHHHhhccCCCCcCchhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55688888888888887777776444456788999998889988887777777888888888888888899999999987
Q ss_pred HhHHHhhcCcE
Q 004170 627 ARDRWERQGIK 637 (770)
Q Consensus 627 a~~rW~~~gi~ 637 (770)
| +.++||+
T Consensus 89 A---y~kN~i~ 96 (315)
T PHA02940 89 A---YNKNAIK 96 (315)
T ss_pred H---HhhccHH
Confidence 6 4566665
No 207
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=25.12 E-value=5.1e+02 Score=27.36 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004170 692 INTIIHKILLFISNLKKWASK 712 (770)
Q Consensus 692 ~~~~~~~i~~~i~~~~~~~~~ 712 (770)
|..++..+..+++.|.+...+
T Consensus 190 i~~ll~~l~~l~~~l~~~~~~ 210 (291)
T TIGR00996 190 IGALIDNLNRVLDVLADRSDQ 210 (291)
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 333444444444444433333
No 208
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.86 E-value=5.3e+02 Score=24.22 Aligned_cols=30 Identities=30% Similarity=0.600 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHH------------HhHHHHHHH
Q 004170 587 QEIARLQYELEVERKALSMAR------------AWAEDEAKR 616 (770)
Q Consensus 587 ~~~~~~k~~LE~Ek~AL~m~R------------~W~EdEA~~ 616 (770)
+.+..++.+|+.+|.=.++++ .|++|++=+
T Consensus 58 ~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdWa~D~~L~ 99 (106)
T PF05837_consen 58 EKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDWAEDPKLR 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 344455555555555555554 799998754
No 209
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=24.61 E-value=3.5e+02 Score=24.31 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=13.0
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcc
Q 004170 662 SVDQTVSRAQSLVDKLKAMANDVS 685 (770)
Q Consensus 662 ~~~~~~~ra~~~~~k~~~~~~~~~ 685 (770)
.+...|.+-...++.|+.|-..+.
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l 35 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELL 35 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555566655555554
No 210
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=24.59 E-value=7.1e+02 Score=24.82 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=46.7
Q ss_pred HHHHHHhhhhhHHHHHH-HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004170 528 VDKIALMKERAAIESEM-EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 528 ~e~~~llKeraa~e~e~-~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
+.....++++-.-...+ ........+|+.|+ +.-.+..|..=-++|.-|++-+++-++.|.+|+...
T Consensus 60 ~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~--~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i 127 (146)
T PF08702_consen 60 KNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI--IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDI 127 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCcccHHHHHHHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566665544444 56677788888888 444444555556789999999999999999987654
No 211
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=24.52 E-value=6e+02 Score=26.63 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=36.4
Q ss_pred ccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 004170 493 SFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 540 (770)
Q Consensus 493 ~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~ 540 (770)
.=.+++..+|.+.+---++.++++++.-+|...+++.-..|++..+++
T Consensus 88 ~~~dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~ 135 (185)
T PF08703_consen 88 KTKDKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEV 135 (185)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888889999999999999998888877777655543
No 212
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=24.47 E-value=1.2e+02 Score=28.77 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=9.0
Q ss_pred HHHHHHHHhHHHHHH
Q 004170 542 SEMEILSKLRREVEE 556 (770)
Q Consensus 542 ~e~~~L~~lr~evde 556 (770)
.|++-|.+||..+++
T Consensus 69 ~EkEqL~~Lk~kl~~ 83 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666665544
No 213
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=24.47 E-value=8.4e+02 Score=30.05 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=5.9
Q ss_pred HhHHHHHHHHHHH
Q 004170 608 AWAEDEAKRAREQ 620 (770)
Q Consensus 608 ~W~EdEA~~~~e~ 620 (770)
--||.|-++-|+|
T Consensus 680 M~ve~eRr~eqeR 692 (940)
T KOG4661|consen 680 MKVEEERRDEQER 692 (940)
T ss_pred HHHHHhhcchhhh
Confidence 3445554444443
No 214
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.03 E-value=2.8e+02 Score=33.83 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCC
Q 004170 572 KERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKD 643 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~ 643 (770)
+-+-|+|++|++.-++.|.++|-.++.++--|+.|.--+|. |. +.++|++. ++.-|+...-+
T Consensus 99 e~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq-aq------~~~~El~~---~n~pkl~LP~s 160 (907)
T KOG2264|consen 99 EVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ-AQ------RQLEELRE---TNNPKLFLPFS 160 (907)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH-HH------HHHHHHHh---hcCCceeeccc
Confidence 44668899999999999999999988888777777654442 22 23555554 34555555444
No 215
>PTZ00421 coronin; Provisional
Probab=24.00 E-value=1.2e+02 Score=35.29 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004170 572 KERINMLRKEAENENQEIARLQYELEVERKALSM 605 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m 605 (770)
+.+|+.|..++...|++|.+++-.|+ ||+++.|
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 484 (493)
T PTZ00421 452 LGRLQALSEKLRTQHEEIKRCREALQ-KKESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35778888888888999999888886 6777666
No 216
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=23.90 E-value=3.7e+02 Score=25.56 Aligned_cols=50 Identities=38% Similarity=0.414 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhH
Q 004170 576 NMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEA-----KRAREQAKALEGARD 629 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA-----~~~~e~A~vLeea~~ 629 (770)
..|+..+..+++.+..|..+||.||.|-..| -+|| |=-.|.|.+-.||++
T Consensus 2 ~~Lr~~v~~er~~~~~L~~ELEeER~AaAsA----A~EAMaMI~RLQ~EKAa~~mEA~Q 56 (94)
T PF04576_consen 2 ERLRRAVEAERKALAALYAELEEERSAAASA----ASEAMAMILRLQEEKAAVEMEARQ 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4577778888888888888888888765443 2333 233455666666654
No 217
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=23.59 E-value=7.5e+02 Score=24.77 Aligned_cols=68 Identities=24% Similarity=0.301 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHH
Q 004170 507 VVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRK 580 (770)
Q Consensus 507 ~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~ 580 (770)
+.+++.+.|..+.+..+. |..-.+.+-..+.-+..+.+++..+-.++.+.|..|..+ +| +.-|.+|..
T Consensus 44 ~~~~i~~~a~~~ae~ek~-r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y---~~~l~~li~ 111 (198)
T PRK03963 44 KAEWILRKAKTQAELEKQ-RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPED--EY---FETLKALTK 111 (198)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hH---HHHHHHHHH
Confidence 344555556555555443 333333444455566677888888888888888887765 22 245555544
No 218
>PRK10780 periplasmic chaperone; Provisional
Probab=23.52 E-value=7.3e+02 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004170 506 DVVEKMAEEARQELERLRAEREVDKIALMKE 536 (770)
Q Consensus 506 ~~vek~~~~~~~ele~~r~~re~e~~~llKe 536 (770)
..+|+.+.....||+.+..+-.+....|-++
T Consensus 46 ~~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 46 KQLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666665555555544444
No 219
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=23.30 E-value=1.4e+03 Score=27.64 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=65.2
Q ss_pred HHHHHccccchhhHHhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004170 447 AVALAIGEASDAVNEELQRIEAESAAENAVSEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAER 526 (770)
Q Consensus 447 AAaL~sG~~~e~v~eEl~r~EAe~~A~~Av~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~r 526 (770)
|++|.--...+.+-+=|+.-|-.-... ..+|.+..++|. -+=.-...++++-+.++++.+.-+..+...+..+.
T Consensus 66 AVilNVlG~~d~~pDPLsPgE~~l~~K-----l~eLE~e~k~d~-v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~ 139 (508)
T PF00901_consen 66 AVILNVLGTGDEPPDPLSPGEQGLQRK-----LKELEDEQKEDE-VREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEE 139 (508)
T ss_pred HHHHHhccCCCCCCCCCCHhHHHHHHH-----HHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHH
Confidence 455552235666656677766443222 334444444443 22222334566777778888877776655444332
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh-hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004170 527 EVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI-SYEKERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 527 e~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~-~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
.+- .+| | .|+++=..++.+=+..++.....|..+...= ..|...+... .+.+.-|+.-+|+||+||.
T Consensus 140 ~q~--~~L-e-kAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~y-------r~ki~aL~~aIe~Er~~m~ 207 (508)
T PF00901_consen 140 NQI--EIL-E-KALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEY-------RQKIDALKNAIEVEREGMQ 207 (508)
T ss_pred HHH--HHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHH
Confidence 211 111 1 1233322222222222222222332222211 2333333333 3445567777888888874
No 220
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=23.04 E-value=7.6e+02 Score=30.62 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=44.8
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 004170 555 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 555 de~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
++|.+.|+.-++.-.. +..++||++|++...+++.+++..|..|.+=+.+.+.+.++
T Consensus 410 ~~q~~~il~m~l~~lt-~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ 466 (738)
T TIGR01061 410 ENQAEAIVSLRLYRLT-NTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEE 466 (738)
T ss_pred HHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4577777766665544 34577999999999999999999999999888887776654
No 221
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=23.00 E-value=1e+03 Score=26.18 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred hhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH------HH-
Q 004170 487 EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQ------LE- 559 (770)
Q Consensus 487 ~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~------~q- 559 (770)
-.|++.||+..-.+|++=...++||+..-..--..-+..+.-....+ +++.+-|=.++|...+.+-.+- |.
T Consensus 21 LqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~--~~S~~~~W~~lL~qT~~~sk~h~~LSd~y~~ 98 (253)
T cd07683 21 LQDLQDFFRKKAEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQN--LLSPVNCWYLLLNQVRRESKDHATLSDIYLN 98 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35999999999888888888888888665542210000101111222 5788888888888887765441 11
Q ss_pred HhhhcceehhhHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 004170 560 SLMSNKVEISYEKERINMLRKEAENE-NQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 560 ~l~s~~~~~~~E~~~l~kl~~~~e~~-~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
.|+..=..+..+-.||.|-.+|+..+ |+++.++..||.-=.|--.|-.
T Consensus 99 ~~~~r~~~~~ed~~ri~kkskEi~~~~~eeLlkV~~EL~t~mKtY~~y~ 147 (253)
T cd07683 99 NVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYH 147 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223777889999999998875 6789999999987555444443
No 222
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=22.84 E-value=3.8e+02 Score=31.12 Aligned_cols=45 Identities=27% Similarity=0.317 Sum_probs=34.1
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004170 555 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 555 de~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
++|++.|..-++-=.. +..++||++++....+++.+++..|..+.
T Consensus 398 ~~q~~~IL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~l~~~~ 442 (445)
T smart00434 398 EEQADAILDMRLRRLT-KLEVEKLEKELKELEKEIEDLEKILASEL 442 (445)
T ss_pred HHHHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 5677777776665333 66788999999999999999988887654
No 223
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=22.68 E-value=1e+02 Score=27.86 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhHH
Q 004170 598 VERKALSMARAWAEDEA---KRAREQAKALEGARDR 630 (770)
Q Consensus 598 ~Ek~AL~m~R~W~EdEA---~~~~e~A~vLeea~~r 630 (770)
....++.||+.|.+.+. .....-.++|.+++++
T Consensus 41 l~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~ 76 (86)
T cd08779 41 LDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ 76 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH
Confidence 45678999999999882 3355677777776654
No 224
>KOG4744 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=6.3e+02 Score=28.51 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcc
Q 004170 669 RAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTE 748 (770)
Q Consensus 669 ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (770)
.|.+.-+.-++.+.+..-+..+.-...-.+..+..+..|+.++.+-..+.+.-.....++.....-....+.++-...++
T Consensus 178 kA~dake~Ak~~A~d~~d~a~e~~~~A~dk~~et~e~~Kdka~d~~e~A~d~a~~~k~~a~~~~~~~~dk~~d~~esak~ 257 (308)
T KOG4744|consen 178 KAADAKESAKNKAEDTKDSAPEAAGSAKDKAAETAEKAKDKAQDAKEKAKDKAQTVKEKAGEAAEKTKEKAKDAWESAKE 257 (308)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 33444444455555555555555555666666666666666666666665555555555555555555555555555555
Q ss_pred cchhhhhhhhhhHH
Q 004170 749 GAKRVAGDCREGVE 762 (770)
Q Consensus 749 ~~k~~~~~c~~~v~ 762 (770)
++++.++.-.++|+
T Consensus 258 ~a~~~~~~A~~~~~ 271 (308)
T KOG4744|consen 258 GADQMAEGASDAVK 271 (308)
T ss_pred HHHHHHHHHHhhhh
Confidence 55555555444443
No 225
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.47 E-value=5e+02 Score=23.90 Aligned_cols=56 Identities=27% Similarity=0.280 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH
Q 004170 573 ERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARD 629 (770)
Q Consensus 573 ~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~ 629 (770)
.-|.+|.+.++.+.+..... .+||.|...|.--|+=...|=-++..|+.-||++-+
T Consensus 15 ~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~ 70 (89)
T PF13747_consen 15 AAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANR 70 (89)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777777777654444 888888888888888888888888888888887644
No 226
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.45 E-value=8e+02 Score=24.63 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHH
Q 004170 506 DVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLES 560 (770)
Q Consensus 506 ~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~ 560 (770)
..+++-++.++.+++.+++ ++..+-+++..++.+-.-|..=+..++.+||.
T Consensus 41 e~~~~daEn~k~eie~L~~----el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 41 ECLILDAENSKAEIETLEE----ELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555544443 44567777777877766666666666666654
No 227
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=22.25 E-value=9.4e+02 Score=25.37 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHh
Q 004170 586 NQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWE 632 (770)
Q Consensus 586 ~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~ 632 (770)
.+.+..+..++|..||-+ --.|.. ..++..+.-..|+.|..+|.
T Consensus 92 ~~eL~~l~~~~e~~RK~~--ke~~~k-~~k~~~~a~~~leKAK~~Y~ 135 (234)
T cd07652 92 SDELSSLAKTVEKSRKSI--KETGKR-AEKKVQDAEAAAEKAKARYD 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHH--HHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777752 223332 23445555667788888876
No 228
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.16 E-value=1.9e+03 Score=28.88 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=61.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHH---hhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 004170 464 QRIEAESAAENAVSEHSALVAEV---EKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAI 540 (770)
Q Consensus 464 ~r~EAe~~A~~Av~a~~~l~~~~---~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~ 540 (770)
+|+|+-.--..+...+++|.+.+ +..| ..|+.++.-=+....-+|........+.+.++.+-..-+.....=.-++
T Consensus 665 srLe~~k~~~~~~~~~~~l~~~L~~~r~~i-~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 665 SRLELLKNVNESRSELKELQESLDEVRNEI-EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 46666666666666666665554 4455 2343333333333333444444444444444444333333222223333
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceeh---h------hHHHHHHHHHHHHHHHHHHHHHh
Q 004170 541 ESEMEILSKLRREVEEQLESLMSNKVEI---S------YEKERINMLRKEAENENQEIARL 592 (770)
Q Consensus 541 e~e~~~L~~lr~evde~~q~l~s~~~~~---~------~E~~~l~kl~~~~e~~~~~~~~~ 592 (770)
+.-...|..++-..+.+.+..-+.+.++ + .|++++.+|..++..=++.+-.+
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~ 804 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRAL 804 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3333444444444443333333332222 2 46788888888877666555443
No 229
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=22.09 E-value=5.4e+02 Score=30.09 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 004170 555 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 555 de~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
++|++.|.+-++--.+ +..++||+++++...+++..++.. +...-|.+|
T Consensus 385 ~~q~~~lL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~--------t~~~~w~~D 433 (439)
T PHA02592 385 GEYADKLVAMNIYSMT-SDEREKLQKEAEELEKEHEYWKKT--------TAKKEYIKD 433 (439)
T ss_pred HHHHHHHHHhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 4577777776655444 677888888888888888887763 555667766
No 230
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.03 E-value=5.8e+02 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004170 690 EIINTIIHKILLFISNLKKWASKAS 714 (770)
Q Consensus 690 ~~~~~~~~~i~~~i~~~~~~~~~~~ 714 (770)
+-|+.++..|..+...++..+..+.
T Consensus 46 ~~l~~~~~~~~~~~~~i~~~lk~l~ 70 (117)
T smart00503 46 EKLERLIDDIKRLAKEIRAKLKELE 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 231
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.96 E-value=9.2e+02 Score=27.41 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004170 538 AAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 538 aa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
.+|.+|+.-|..|+..+.. +-.. .=..|.+.+++|.+++...+..+.+....|
T Consensus 39 ssI~~QkkrLk~L~~sLk~----~~~~--~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 39 SSISHQKKRLKELKKSLKR----CKKS--LSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHH----hccC--CChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3455565555544443322 2111 122467777788777777666666555443
No 232
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=21.26 E-value=9.1e+02 Score=24.83 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhH
Q 004170 539 AIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQ 593 (770)
Q Consensus 539 a~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k 593 (770)
.++.+.+.|.+...+++..-+.|...+-.+-.-+..++.|..+...+.+.|+.+.
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT 147 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLT 147 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344444444444444444444443333333334444444444444444444443
No 233
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=21.09 E-value=5.9e+02 Score=22.62 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhhcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhhhhHHHHHHhHHHH
Q 004170 670 AQSLVDKLKAMANDVS-----GKSKEIINTIIHKILLFISNLKKWASKASMRA--AELKDATILKAKGSVQELQQSTAEF 742 (770)
Q Consensus 670 a~~~~~k~~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (770)
-.+.+..|+.|...++ ...|+=|..+++++..++..+.+.+.++...+ ................+.+....+|
T Consensus 8 in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~f 87 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEF 87 (102)
T ss_dssp HHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554 34555566667777777777777777666651 1111112233334445555555555
Q ss_pred hhhh
Q 004170 743 RSNL 746 (770)
Q Consensus 743 ~~~~ 746 (770)
....
T Consensus 88 q~~q 91 (102)
T PF14523_consen 88 QKAQ 91 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 234
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.99 E-value=1.3e+03 Score=27.26 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=7.3
Q ss_pred hcceehhhHHHHHHHHHH
Q 004170 563 SNKVEISYEKERINMLRK 580 (770)
Q Consensus 563 s~~~~~~~E~~~l~kl~~ 580 (770)
-.+++++.=..-|+..+.
T Consensus 104 ~q~~e~~n~~~~l~~~~~ 121 (459)
T KOG0288|consen 104 EQKAEFENAELALREMRR 121 (459)
T ss_pred HhhhhhccchhhHHHHHH
Confidence 334444443333433333
No 235
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.81 E-value=3.9e+02 Score=27.48 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHH
Q 004170 508 VEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERI 575 (770)
Q Consensus 508 vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l 575 (770)
++..++-....++++.. |-+++...|.-+|.---=-|||.| |+|+|||+++|-+--.-|..+.+..
T Consensus 83 ~~~R~~lLe~~~~~l~~-ri~eLe~~l~~kad~vvsYqll~h-r~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 83 SSVDFEQLEAQLNTITR-RLDELERQLQQKADDVVSYQLLQH-RREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHh-HHHHHHHHHHHHHHHHHHHHHHhhc
No 236
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.75 E-value=1.8e+03 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=16.8
Q ss_pred hhhhhhccchhhhHHHhhHHH
Q 004170 487 EKEINESFEKELSMEREKIDV 507 (770)
Q Consensus 487 ~gdi~~~F~~~~~~eR~~~~~ 507 (770)
.-+|+.||.|++..+|....+
T Consensus 30 ~~~i~~fwspElkrer~~rke 50 (775)
T PF10174_consen 30 MNSIKTFWSPELKRERALRKE 50 (775)
T ss_pred HHhHhcccchhhHHHHHHHHH
Confidence 568888999999999866553
No 237
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=20.71 E-value=2.3e+02 Score=26.85 Aligned_cols=60 Identities=37% Similarity=0.382 Sum_probs=34.1
Q ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHhHHHHHH
Q 004170 497 ELSMEREKIDVVEKMAEEARQELERLRAEREVD----KIALMKERAAIESEMEILSKLRREVEE 556 (770)
Q Consensus 497 ~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e----~~~llKeraa~e~e~~~L~~lr~evde 556 (770)
++..|+.+...+|+-....-.||+.|-+.==.+ -+.--++|++++.....|-.--.|.+.
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~ 65 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA 65 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777643111 123335566666655544443334433
No 238
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.64 E-value=1.1e+03 Score=25.62 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHHH
Q 004170 535 KERAAIESEMEIL 547 (770)
Q Consensus 535 Keraa~e~e~~~L 547 (770)
++..|+..|++.+
T Consensus 89 ~e~~aL~~E~~~a 101 (239)
T COG1579 89 RELRALNIEIQIA 101 (239)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 239
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.57 E-value=1.5e+03 Score=27.07 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004170 579 RKEAENENQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 579 ~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
+...+.++++..++--+|--|++-|+|.-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33356666666666666666666665543
No 240
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.57 E-value=1.1e+03 Score=25.34 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhcc---cchHHHHHHHHH
Q 004170 671 QSLVDKLKAMANDVS---GKSKEIINTIIH 697 (770)
Q Consensus 671 ~~~~~k~~~~~~~~~---~~~~~~~~~~~~ 697 (770)
+.|-++|+.|..++. ...+..=.-+||
T Consensus 185 k~lq~QL~~L~~EL~~~kde~k~T~~D~~h 214 (246)
T PF00769_consen 185 KRLQEQLKELKSELEQLKDEEKQTQLDIIH 214 (246)
T ss_dssp HHHHHHHHHHHHHHHTTB-CCG--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 678888988888774 334444444444
No 241
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.50 E-value=1.1e+03 Score=27.51 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004170 556 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 556 e~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
.|.+.|.+-++--.. +..++||+++++..++++.+++..|..+.+...|..
T Consensus 389 ~qa~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~ 439 (445)
T cd00187 389 IQADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDLWK 439 (445)
T ss_pred HHHHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 366666665554444 567889999999999999999999988888766643
No 242
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.49 E-value=1.4e+03 Score=26.84 Aligned_cols=62 Identities=26% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHhhhcceehhhHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 004170 557 QLESLMSNKVEISYEKERINMLR-----------KEAENENQEIARLQYELEVERKALSMAR---AWAEDEAKRAR 618 (770)
Q Consensus 557 ~~q~l~s~~~~~~~E~~~l~kl~-----------~~~e~~~~~~~~~k~~LE~Ek~AL~m~R---~W~EdEA~~~~ 618 (770)
.+..|+-.+..|..|+..+..++ ..++.+++-+.++.++|+.+.+=|.-|+ +=++++-.+..
T Consensus 169 ~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 169 TLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455666777777777766444 3444555555666666766666666665 33444444444
No 243
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.44 E-value=1.8e+03 Score=27.89 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=5.9
Q ss_pred HHHhhHHHHHHHHH
Q 004170 500 MEREKIDVVEKMAE 513 (770)
Q Consensus 500 ~eR~~~~~vek~~~ 513 (770)
++|++....||+++
T Consensus 264 ~erEr~~leeKrlk 277 (811)
T KOG4364|consen 264 KERERQVLEEKRLK 277 (811)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 244
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=9.5e+02 Score=26.39 Aligned_cols=88 Identities=18% Similarity=0.097 Sum_probs=42.2
Q ss_pred hhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHh-HHHhhcCcEEE
Q 004170 562 MSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA-RAWAEDEAKRAREQAKALEGAR-DRWERQGIKVV 639 (770)
Q Consensus 562 ~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~-R~W~EdEA~~~~e~A~vLeea~-~rW~~~gi~v~ 639 (770)
....-....+..+..+|+.++.+.++.+.+|+++.+.=-+.+.-. |+=.++.+.=.++-++.=+.|+ --=-+.||-|.
T Consensus 39 ~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~IT 118 (247)
T COG3879 39 FQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVIT 118 (247)
T ss_pred HhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEE
Confidence 333333444455555777777777776666665544322222222 2222222222221111111111 01237899999
Q ss_pred EcCCcccccc
Q 004170 640 VDKDLREESD 649 (770)
Q Consensus 640 vd~~~~~~~~ 649 (770)
+|+.....+.
T Consensus 119 i~d~~~~~~~ 128 (247)
T COG3879 119 IDDPGYSPNG 128 (247)
T ss_pred ecCCCCCccc
Confidence 9987776655
No 245
>PF13945 NST1: Salt tolerance down-regulator
Probab=20.34 E-value=2.4e+02 Score=29.58 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=46.4
Q ss_pred hhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 004170 488 KEINESFEKELSMEREKIDVVEKMAEEARQELERLRAERE-VDK-IALMKERAAIESEMEILSKLRREVEEQLESL 561 (770)
Q Consensus 488 gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re-~e~-~~llKeraa~e~e~~~L~~lr~evde~~q~l 561 (770)
--|+.||..--..||..++-|||-.. |..+|..+. -+. .+-=+-|.|||.|++.|.....|--+++...
T Consensus 105 e~LkeFW~SL~eeERr~LVkIEKe~V-----LkkmKeqq~h~C~C~vCgr~~~~ie~ele~ly~~~y~~l~~~~~~ 175 (190)
T PF13945_consen 105 EKLKEFWESLSEEERRSLVKIEKEAV-----LKKMKEQQKHSCSCSVCGRKRTAIEEELERLYDAYYEELEQYANH 175 (190)
T ss_pred HHHHHHHHccCHHHHHHHHHhhHHHH-----HHHHHHHhccCcccHHHhchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777888877888999999998542 334443221 111 2344567899999999998887766666543
No 246
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=20.02 E-value=1.7e+03 Score=27.45 Aligned_cols=24 Identities=8% Similarity=0.200 Sum_probs=14.3
Q ss_pred hhhcccchhhhhhhhhhHHhhhhh
Q 004170 744 SNLTEGAKRVAGDCREGVEKLTQR 767 (770)
Q Consensus 744 ~~~~~~~k~~~~~c~~~v~k~~~~ 767 (770)
...++-.-+.+..|+-+.-..+-+
T Consensus 571 ~~~~~~~~~~~~~~k~~~s~hs~~ 594 (607)
T KOG0240|consen 571 NTKMEQEEKELRPCKLLISQHSAK 594 (607)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344455557777888776544443
Done!