Query 004170
Match_columns 770
No_of_seqs 167 out of 225
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004170.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004170hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 58.2 6.3 0.00046 34.2 5.4 24 662-685 4-27 (144)
2 d1gs9a_ a.24.1.1 (A:) Apolipop 37.2 17 0.0013 31.3 4.8 75 670-744 43-121 (144)
3 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 37.2 1.1E+02 0.0082 25.6 10.6 94 663-761 14-115 (196)
4 d1y74a1 a.194.1.1 (A:17-73) Li 34.9 26 0.0019 27.2 4.8 45 662-709 2-46 (57)
5 d2efla1 a.238.1.4 (A:1-288) Fo 31.5 1.7E+02 0.012 25.8 18.1 56 571-626 165-221 (288)
6 d2efla1 a.238.1.4 (A:1-288) Fo 29.9 1.8E+02 0.013 25.6 20.0 34 672-705 211-244 (288)
7 d1gqea_ e.38.1.1 (A:) Polypept 27.4 2.1E+02 0.015 28.3 11.7 30 530-559 50-79 (362)
8 d2fupa1 a.47.5.1 (A:1-130) Hyp 27.0 1.3E+02 0.0091 24.7 8.6 53 621-680 54-107 (130)
9 d1eq1a_ a.63.1.1 (A:) Apolipop 24.2 97 0.0071 27.9 7.7 92 669-760 53-144 (166)
10 d1zl8a1 a.194.1.1 (A:4-53) Lin 18.2 35 0.0025 25.9 2.6 43 663-708 2-44 (50)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=58.20 E-value=6.3 Score=34.25 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=15.9
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcc
Q 004170 662 SVDQTVSRAQSLVDKLKAMANDVS 685 (770)
Q Consensus 662 ~~~~~~~ra~~~~~k~~~~~~~~~ 685 (770)
.+++++++.-+-+++++.++.++-
T Consensus 4 ~~e~~~d~f~~y~~~l~~~a~~~~ 27 (144)
T d1gs9a_ 4 RWELALGRFWDYLRWVQTLSEQVQ 27 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHH
Confidence 356677777777777777666553
No 2
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=37.21 E-value=17 Score=31.27 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhh
Q 004170 670 AQSLVDKLKAMANDVSGK----SKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRS 744 (770)
Q Consensus 670 a~~~~~k~~~~~~~~~~~----~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (770)
...+++.+.....+++++ +.++-.++.+.+..|=..|...+.++..+....-+-...++...+.++++.+.....
T Consensus 43 l~e~~~~l~~~~~~l~~~l~p~~~e~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~e 121 (144)
T d1gs9a_ 43 MDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLR 121 (144)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555533333332 333333333333333333333344444333322233233333444444444444333
No 3
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.17 E-value=1.1e+02 Score=25.61 Aligned_cols=94 Identities=9% Similarity=0.141 Sum_probs=45.0
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHH
Q 004170 663 VDQTVSRAQSLVDKLKAMANDVS--------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQE 734 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (770)
+...|.+-...+++|..+..... .+.++-|+.+...|..++..+++.+..+......-+.. ..-.......
T Consensus 14 I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~~~~~~l~~~ 92 (196)
T d1fioa_ 14 INRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNK-QAQAENSRQR 92 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHH-HHHHHHHHHH
Confidence 44455555666666766655432 23444556666666666666666555443332211111 1112233344
Q ss_pred HHHhHHHHhhhhcccchhhhhhhhhhH
Q 004170 735 LQQSTAEFRSNLTEGAKRVAGDCREGV 761 (770)
Q Consensus 735 ~~~~~~~~~~~~~~~~k~~~~~c~~~v 761 (770)
++..+..|...- ....+.||..+
T Consensus 93 l~~~~~~f~~~q----~~~~~~~k~~~ 115 (196)
T d1fioa_ 93 FLKLIQDYRIVD----SNYKEENKEQA 115 (196)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 554555554443 34444555543
No 4
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.94 E-value=26 Score=27.20 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=31.8
Q ss_pred chHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Q 004170 662 SVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKW 709 (770)
Q Consensus 662 ~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 709 (770)
.++.-|+||-.|+|||+. .+.+..--...|.+|.| ..|.+.+||-
T Consensus 2 ~L~rDv~RaieLle~LQ~-~gevp~~KL~aLqkVLq--SdF~~avREV 46 (57)
T d1y74a1 2 GLERDVSRAVELLERLQR-SGELPPQKLQALQRVLQ--SRFCSAIREV 46 (57)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHH--SHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHH--HHHHHHHHHH
Confidence 467789999999999987 56666555666666665 3566666553
No 5
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.45 E-value=1.7e+02 Score=25.82 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q 004170 571 EKERINMLRKEAENENQEIARLQYELEVERKALSMAR-AWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 571 E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R-~W~EdEA~~~~e~A~vLee 626 (770)
-+..++|+....+...+.+.+++.++..-..++..+| .|-+.+....-..-.-||+
T Consensus 165 ~~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~ 221 (288)
T d2efla1 165 TKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEE 221 (288)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888777777766666665553 4544444444444444444
No 6
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.92 E-value=1.8e+02 Score=25.64 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=14.4
Q ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH
Q 004170 672 SLVDKLKAMANDVSGKSKEIINTIIHKILLFISN 705 (770)
Q Consensus 672 ~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 705 (770)
.+++.++.|-...-...+++|.++...+..++..
T Consensus 211 ~~~~~~q~~e~~r~~~~k~~l~~~~~~~~~~~~~ 244 (288)
T d2efla1 211 NIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPI 244 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444444444433333333
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=27.41 E-value=2.1e+02 Score=28.28 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHHHHH
Q 004170 530 KIALMKERAAIESEMEILSKLRREVEEQLE 559 (770)
Q Consensus 530 ~~~llKeraa~e~e~~~L~~lr~evde~~q 559 (770)
...++||++.++...+.+..|+..+++.-+
T Consensus 50 Aqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 50 AQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988877644
No 8
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.02 E-value=1.3e+02 Score=24.75 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhccc-ccchHHHHHhHHHHHHHHHHh
Q 004170 621 AKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNAGK-QFSVDQTVSRAQSLVDKLKAM 680 (770)
Q Consensus 621 A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~~~~~-~~~~~~~~~ra~~~~~k~~~~ 680 (770)
...++++|++|-.. -++..+...-..|..... ...+....++-..++.++|.+
T Consensus 54 l~~~~~~R~~~l~~-------~g~~~~~~~~~~l~~~~~~~~~l~~~~~~L~~l~~~~k~~ 107 (130)
T d2fupa1 54 LERNGRARAEILRE-------AGVSLDREGLARYARERADGAELLARGDELGELLERCQQA 107 (130)
T ss_dssp HHHHHHHHHHHHHH-------TTCCSSHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCCCCcchHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777644 233333333333443321 222444445555555555544
No 9
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=24.20 E-value=97 Score=27.91 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcc
Q 004170 669 RAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTE 748 (770)
Q Consensus 669 ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (770)
....++.-|..-..+-.+++.+.+...=+.|..+-.-||+-.-.+.+.+.++...+-..+...+++++....+.+..+.+
T Consensus 53 ~~~~~~~~l~~~~~Ea~~~a~dav~qa~~nle~~Aeelrk~~e~ikq~a~d~~~~~~~~~~~~vqe~~~~ake~~~~l~E 132 (166)
T d1eq1a_ 53 QLSAFSSSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEE 132 (166)
T ss_dssp HHHHHHHHHHHHHTTCSSTHHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555677888999998888888888888888888888877777777777777888999988899999988
Q ss_pred cchhhhhhhhhh
Q 004170 749 GAKRVAGDCREG 760 (770)
Q Consensus 749 ~~k~~~~~c~~~ 760 (770)
.-++++.+-++-
T Consensus 133 ~n~kl~~~~K~~ 144 (166)
T d1eq1a_ 133 TNKKLAPKIKQA 144 (166)
T ss_dssp SCGGGHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877665554
No 10
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=18.25 E-value=35 Score=25.85 Aligned_cols=43 Identities=12% Similarity=0.370 Sum_probs=29.0
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 004170 663 VDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 708 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 708 (770)
++.-|+||-.|+|||+. .++|..--...|.+|.| ..|.+.+||
T Consensus 2 L~rDv~RaieLle~Lq~-sgevp~~KL~aLqkVLq--SdF~~avRE 44 (50)
T d1zl8a1 2 LERDVQRILELMEHVQK-TGEVNNAKLASLQQVLQ--SEFFGAVRE 44 (50)
T ss_dssp HHHHHHHHHHHHHHHGG-GSSSTHHHHHHHHHHHS--CSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHH--HHHHHHHHH
Confidence 56779999999999976 35666555566666554 245555554
Done!