Query 004172
Match_columns 770
No_of_seqs 167 out of 225
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 100.0 2.1E-28 7.3E-33 237.6 15.9 168 242-453 4-174 (203)
2 4aq1_A SBSB protein; structura 99.9 2.6E-23 8.8E-28 236.8 0.0 164 242-453 3-167 (892)
3 3pyw_A S-layer protein SAP; SL 99.8 2.8E-20 9.6E-25 180.7 10.5 161 319-507 3-169 (203)
4 4aq1_A SBSB protein; structura 99.6 2.5E-16 8.7E-21 180.0 0.0 159 319-507 2-162 (892)
5 1i84_S Smooth muscle myosin he 93.5 0.17 5.7E-06 61.2 9.3 16 175-191 247-262 (1184)
6 2no2_A HIP-I, huntingtin-inter 90.5 9.6 0.00033 34.7 15.0 100 479-604 3-102 (107)
7 3oja_B Anopheles plasmodium-re 88.6 5.8 0.0002 43.3 14.3 37 570-606 527-563 (597)
8 2fxo_A Myosin heavy chain, car 86.9 13 0.00043 34.4 13.5 75 521-602 34-108 (129)
9 3vkg_A Dynein heavy chain, cyt 86.4 19 0.00064 48.6 19.4 67 502-568 1933-1999(3245)
10 3vkg_A Dynein heavy chain, cyt 85.8 47 0.0016 45.0 22.5 52 549-600 1931-1982(3245)
11 2dfs_A Myosin-5A; myosin-V, in 85.1 9.5 0.00032 46.3 14.8 33 572-604 1011-1043(1080)
12 3oja_B Anopheles plasmodium-re 84.9 12 0.0004 40.9 14.2 57 541-597 473-529 (597)
13 3na7_A HP0958; flagellar bioge 84.3 37 0.0013 34.2 23.3 49 501-549 51-104 (256)
14 1i84_S Smooth muscle myosin he 84.2 2.5 8.5E-05 51.2 9.3 10 156-165 236-245 (1184)
15 2dfs_A Myosin-5A; myosin-V, in 82.9 8.6 0.0003 46.6 13.1 58 540-597 965-1022(1080)
16 3ghg_A Fibrinogen alpha chain; 77.8 10 0.00035 43.0 10.6 36 550-585 122-157 (562)
17 1x79_B RAB GTPase binding effe 75.1 12 0.0004 34.7 8.5 33 544-576 65-97 (112)
18 2i1j_A Moesin; FERM, coiled-co 74.2 4.7 0.00016 45.6 6.9 91 501-591 326-426 (575)
19 3k29_A Putative uncharacterize 73.7 73 0.0025 31.5 17.1 68 496-569 9-76 (169)
20 3mpc_A FN3-like protein; fibro 68.4 2.3 8E-05 37.1 2.3 59 151-209 3-78 (103)
21 3tnu_A Keratin, type I cytoske 67.4 57 0.002 30.0 11.4 32 573-604 91-125 (131)
22 1u5p_A Spectrin alpha chain, b 63.5 98 0.0033 29.0 19.4 57 666-723 140-203 (216)
23 3hnw_A Uncharacterized protein 61.3 1.1E+02 0.0038 28.8 12.6 27 571-597 108-134 (138)
24 1fio_A SSO1 protein; four heli 60.8 63 0.0022 30.5 10.8 97 661-762 12-116 (196)
25 1eq1_A Apolp-III, apolipophori 59.5 26 0.0009 33.8 7.7 90 675-764 59-148 (166)
26 3na7_A HP0958; flagellar bioge 55.1 1.8E+02 0.006 29.2 17.6 10 629-639 185-194 (256)
27 1jcd_A Major outer membrane li 54.0 49 0.0017 26.9 7.3 44 574-621 5-48 (52)
28 3oja_A Leucine-rich immune mol 49.5 1.9E+02 0.0066 30.8 13.4 115 512-626 358-484 (487)
29 3c98_B Syntaxin-1A; protein co 47.1 2E+02 0.0068 27.6 12.0 106 663-768 52-168 (279)
30 2b5u_A Colicin E3; high resolu 47.1 3.7E+02 0.013 30.7 16.5 40 577-616 399-441 (551)
31 3bas_A Myosin heavy chain, str 44.0 1.4E+02 0.0049 25.9 9.3 23 579-601 58-80 (89)
32 1u4q_A Spectrin alpha chain, b 43.7 2.5E+02 0.0085 27.7 15.8 161 528-727 36-207 (322)
33 1t6f_A Geminin; coiled-coil, c 41.7 22 0.00076 27.2 3.3 22 576-597 10-31 (37)
34 1f5n_A Interferon-induced guan 40.7 1.4E+02 0.0046 34.2 11.0 13 281-293 286-298 (592)
35 2xhe_B Syntaxin1; exocytosis, 38.4 2.2E+02 0.0076 28.7 11.2 96 660-759 50-167 (279)
36 3vem_A Helicase protein MOM1; 38.4 96 0.0033 29.0 7.6 47 516-563 38-86 (115)
37 3v6i_A V-type ATP synthase sub 37.8 2.7E+02 0.0092 26.4 14.8 52 526-581 58-109 (187)
38 2i1j_A Moesin; FERM, coiled-co 37.5 60 0.002 36.7 7.5 15 671-685 514-528 (575)
39 2no2_A HIP-I, huntingtin-inter 36.2 1.7E+02 0.0058 26.5 8.9 28 570-597 51-78 (107)
40 1fxk_C Protein (prefoldin); ar 36.1 2.4E+02 0.0082 25.3 11.3 26 653-678 72-97 (133)
41 2ocy_A RAB guanine nucleotide 35.6 2.2E+02 0.0074 27.7 9.9 42 565-606 53-94 (154)
42 3ghg_A Fibrinogen alpha chain; 34.8 2.8E+02 0.0094 31.8 11.9 70 528-600 88-158 (562)
43 3i00_A HIP-I, huntingtin-inter 32.6 1.5E+02 0.0052 27.4 8.1 43 504-546 16-58 (120)
44 2inr_A DNA topoisomerase 4 sub 32.2 2.8E+02 0.0096 31.4 11.6 57 555-612 437-493 (514)
45 3qh9_A Liprin-beta-2; coiled-c 32.2 1.2E+02 0.0039 26.9 6.7 51 545-596 26-77 (81)
46 3lay_A Zinc resistance-associa 32.1 1.7E+02 0.0059 28.6 8.8 65 498-590 66-130 (175)
47 3r2p_A Apolipoprotein A-I; amp 31.9 2.7E+02 0.0092 26.6 10.1 20 728-747 109-128 (185)
48 3g9g_A Suppressor of yeast pro 31.5 4.7E+02 0.016 27.3 18.6 46 668-713 202-247 (287)
49 3mov_A Lamin-B1; LMNB1, B-type 30.8 2.8E+02 0.0097 24.6 9.4 74 525-604 9-85 (95)
50 3zrx_A AF1503 protein, osmolar 30.7 1.4E+02 0.0049 23.7 6.9 25 688-712 35-59 (115)
51 2p22_A Suppressor protein STP2 30.6 2E+02 0.007 28.3 9.0 120 477-597 8-135 (174)
52 1sjj_A Actinin; 3-helix bundle 30.6 6.6E+02 0.023 28.7 17.5 80 599-685 449-535 (863)
53 3q8t_A Beclin-1; autophagy, AT 30.3 2.9E+02 0.0098 24.5 10.8 34 514-547 11-44 (96)
54 3swk_A Vimentin; cytoskeleton, 29.4 1.4E+02 0.0046 26.1 6.8 48 556-603 7-54 (86)
55 2p22_A Suppressor protein STP2 29.2 2E+02 0.0069 28.3 8.7 64 542-605 9-77 (174)
56 3q8t_A Beclin-1; autophagy, AT 29.1 3E+02 0.01 24.3 10.6 33 548-580 63-95 (96)
57 2spc_A Spectrin; cytoskeleton; 29.0 74 0.0025 27.0 5.1 58 666-724 34-98 (107)
58 3tnu_B Keratin, type II cytosk 28.9 3.3E+02 0.011 24.8 12.3 32 573-604 89-123 (129)
59 1f5n_A Interferon-induced guan 28.7 5.3E+02 0.018 29.3 13.3 64 496-562 487-554 (592)
60 1cun_A Protein (alpha spectrin 28.5 3.5E+02 0.012 24.9 16.4 57 666-723 137-200 (213)
61 1ud0_A HSC70, 70 kDa heat-shoc 27.7 1.9E+02 0.0064 25.2 7.5 44 665-711 4-49 (113)
62 1yvi_A Histidine-containing ph 27.1 3.7E+02 0.013 24.7 9.9 58 674-731 27-93 (149)
63 1x8y_A Lamin A/C; structural p 26.3 3.2E+02 0.011 23.6 8.9 39 572-613 41-82 (86)
64 2eqb_B RAB guanine nucleotide 25.8 3.8E+02 0.013 24.3 10.6 60 501-567 10-69 (97)
65 4aj5_K Spindle and kinetochore 25.5 3.9E+02 0.013 25.2 9.5 105 505-610 7-120 (123)
66 2p2u_A HOST-nuclease inhibitor 25.3 2.8E+02 0.0096 26.7 8.9 102 574-680 17-119 (171)
67 3ol1_A Vimentin; structural ge 25.2 3.9E+02 0.013 24.3 14.2 51 536-603 63-113 (119)
68 2a01_A Apolipoprotein A-I; fou 25.0 5.1E+02 0.017 25.9 11.1 42 727-768 195-236 (243)
69 4etp_A Kinesin-like protein KA 24.7 2.8E+02 0.0096 30.0 9.7 63 566-640 3-65 (403)
70 2jee_A YIIU; FTSZ, septum, coi 24.1 3.4E+02 0.012 23.9 8.3 37 545-581 6-42 (81)
71 2a01_A Apolipoprotein A-I; fou 23.7 2.2E+02 0.0074 28.6 8.1 42 728-769 174-215 (243)
72 1nfn_A Apolipoprotein E3; lipi 22.9 3.6E+02 0.012 26.3 9.3 28 680-707 85-112 (191)
73 2xnx_M M protein, M1-BC1; cell 22.5 1.6E+02 0.0056 28.4 6.5 25 538-562 69-93 (146)
74 2wq1_A General control protein 22.5 1.3E+02 0.0044 22.7 4.5 26 580-605 3-28 (33)
75 3d2f_A Heat shock protein homo 22.2 6.4E+02 0.022 28.8 12.5 14 281-294 299-312 (675)
76 3mq9_A Bone marrow stromal ant 22.1 7.2E+02 0.025 26.3 13.6 96 481-600 373-470 (471)
77 3opc_A Uncharacterized protein 22.0 4.6E+02 0.016 24.0 12.8 120 575-708 6-131 (154)
78 3c3g_A Alpha/beta peptide with 21.4 1.4E+02 0.0048 22.5 4.5 25 580-604 3-27 (33)
79 3i00_A HIP-I, huntingtin-inter 20.7 3.5E+02 0.012 25.0 8.2 11 515-525 20-30 (120)
80 1gk4_A Vimentin; intermediate 20.6 4E+02 0.014 22.8 9.2 33 572-604 39-74 (84)
81 1gmj_A ATPase inhibitor; coile 20.3 1.9E+02 0.0066 25.6 6.0 36 571-606 38-77 (84)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.96 E-value=2.1e-28 Score=237.60 Aligned_cols=168 Identities=20% Similarity=0.205 Sum_probs=132.2
Q ss_pred ccccC-CCccccccccchhhHHHHHhcccccccC-CCcCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCCC
Q 004172 242 ALQVL-PGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDL 319 (770)
Q Consensus 242 a~~v~-~~rv~VPaa~D~~qIeaLaaLGILkgiE-~~F~Pn~pITRaEFArwLVRAln~L~R~p~~kI~P~~~i~~st~~ 319 (770)
+|.|. .++ -+.+ .|+.|..+|+++|++ ++|+|+++|||+||+.||+++++. + .......
T Consensus 4 ~F~Dv~~~~----wa~~--~I~~l~~~gii~G~~dg~F~P~~~iTR~e~a~~l~r~~~~----------~---~~~~~~~ 64 (203)
T 3pyw_A 4 TFPDVPADH----WGID--SINYLVEKGAVKGNDKGMFEPGKELTRAEAATMMAQILNL----------P---IDKDAKP 64 (203)
T ss_dssp CBTTBCTTS----TTHH--HHHHHHHTTSCCCCTTSCCCTTCBCBHHHHHHHHHHHTTC----------C---CCTTCCC
T ss_pred CCcCCCCCc----HHHH--HHHHHHHCcCEecCCCCeECCCCCchHHHHHHHHHHHhCC----------C---CCcCCCC
Confidence 45444 666 3444 899999999999997 699999999999999999999871 1 1123456
Q ss_pred CccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHH-HhccCCchhhHhhhhcccC
Q 004172 320 AFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMA-LEKRQLPEANKKILYQLSG 398 (770)
Q Consensus 320 AF~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAawkva-Le~~~Lp~ad~k~l~~~~~ 398 (770)
.|+||+ +||++.+|+.|+++|||.|+ +++ |+|+++|||+||+.|+++ +.+.. .. . ......
T Consensus 65 ~F~Dv~-~~w~~~~i~~a~~~Gii~g~-----------~~~-F~P~~~iTR~e~a~~l~r~~~~~~---~~-~-~~~~~~ 126 (203)
T 3pyw_A 65 SFADSQ-GQWYTPFIAAVEKAGVIKGT-----------GNG-FEPNGKIDRVSMASLLVEAYKLDT---KV-N-GTPATK 126 (203)
T ss_dssp SCGGGC-SSTTHHHHHHHHHTTSSCCC-----------SSC-CCTTSBCBHHHHHHHHHHHHTGGG---GS-S-SCCCCC
T ss_pred CCCCCC-cHHHHHHHHHHHHCcCeecC-----------CCC-CCCCCcccHHHHHHHHHHHhcccc---cc-c-cccCCC
Confidence 899995 89999999999999999987 234 999999999999998874 43321 10 0 112457
Q ss_pred ccccCCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcc
Q 004172 399 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 453 (770)
Q Consensus 399 F~DadkIs~~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAAAaL~sG 453 (770)
|.|...| .|+.++|......| |+ .|..+.|+|++++||+|+|++|++-
T Consensus 127 f~D~~~i-~wa~~~v~~~~~~G---i~---~g~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 127 FKDLETL-NWGKEKANILVELG---IS---VGTGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp CHHHHTC-SSSHHHHHHHHHTT---CS---CCCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred CCCCCcc-HHHHHHHHHHHHCc---CE---eCCCCCcCCCCCCcHHHHHHHHHHH
Confidence 9999999 89999998777654 55 3444589999999999999999954
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.86 E-value=2.6e-23 Score=236.81 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=0.0
Q ss_pred ccccCCCccccccccchhhHHHHHhcccccccC-CCcCCCCCccHHHHHHHHHHhcccccccccccccccccccCCCCCC
Q 004172 242 ALQVLPGKVLVPAVVDQVQGQALSALQVLKVIE-ADVKPGDLCIRREYARWLVSASSTLTRSTMSKVYPAMYIENVTDLA 320 (770)
Q Consensus 242 a~~v~~~rv~VPaa~D~~qIeaLaaLGILkgiE-~~F~Pn~pITRaEFArwLVRAln~L~R~p~~kI~P~~~i~~st~~A 320 (770)
+|.|++++ . .+ .|+.|+.+|+++|++ +.|+|+++|||+|||.||+|+++. +. .....+.
T Consensus 3 SFsDV~gH----W-ke--aIe~LaekGIIkGY~DGTFrPdkpITRAEFAaMLvRALGL----------e~---~saas~s 62 (892)
T 4aq1_A 3 SFTDVAPQ----Y-KD--AIDFLVSTGATKGKTETKFGVYDEITRLDAAVILARVLKL----------DV---GNAKDAG 62 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCCCHH----H-HH--HHHHHHHCCCEeeCCCCcCCCCcchhHHHHHHHHHHHhCC----------Cc---ccccCCC
Confidence 57777776 2 44 899999999999997 689999999999999999999861 11 1223578
Q ss_pred ccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhccCCchhhHhhhhcccCcc
Q 004172 321 FDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSGFI 400 (770)
Q Consensus 321 F~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAawkvaLe~~~Lp~ad~k~l~~~~~F~ 400 (770)
|.||+. |++.||+.|+++|||.|+. +++|+|+++|||+||+.|++++- +++... ....|.
T Consensus 63 FSDVp~--Wya~yIaaAveaGIIsGy~-----------DGTFrPnqpITRAEaAvMLvRAL--gL~~~~-----~~ssFk 122 (892)
T 4aq1_A 63 FTDVPK--DRAKYVNALVEAGVLNGKA-----------PGKFGAYDPLTRVEMAKIIANAH--KLKADD-----VKLPFT 122 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCCH--HHHHHHHHHHHCCCEecCC-----------CCcCCCCCCccHHHHHHHHHHHh--CCCCcc-----ccCCcc
Confidence 999975 6789999999999999883 23899999999999999876422 222211 235799
Q ss_pred ccCCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHcc
Q 004172 401 DIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIG 453 (770)
Q Consensus 401 DadkIs~~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAAAaL~sG 453 (770)
|...+ |+ ++|...... ||+.+. .++.|+|++++||+|||+||++.
T Consensus 123 DV~s~--WA-eaIaaAve~---GIIsGy--~DGtFrPn~~ITRAEAAvmL~RA 167 (892)
T 4aq1_A 123 DVNDT--WA-PYVKALYKY---EVTKGK--TPTSFGAYQNITRGDFAQFVYRA 167 (892)
T ss_dssp -----------------------------------------------------
T ss_pred CCcHH--HH-HHHHHHHHc---CCeecC--CCCcCCCCCcccHHHHHHHHHHH
Confidence 99865 77 777665544 455332 34689999999999999999965
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.82 E-value=2.8e-20 Score=180.67 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=122.8
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhccCCchhhHhhhhcccC
Q 004172 319 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 398 (770)
Q Consensus 319 ~AF~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAawkvaLe~~~Lp~ad~k~l~~~~~ 398 (770)
..|+||+.+||++.+|+.|++.|||.|+. + ++|+|+++|||+|++.|++++- +++... .....
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~~---------d--g~F~P~~~iTR~e~a~~l~r~~--~~~~~~----~~~~~ 65 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGND---------K--GMFEPGKELTRAEAATMMAQIL--NLPIDK----DAKPS 65 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCCT---------T--SCCCTTCBCBHHHHHHHHHHHT--TCCCCT----TCCCS
T ss_pred CCCcCCCCCcHHHHHHHHHHHCcCEecCC---------C--CeECCCCCchHHHHHHHHHHHh--CCCCCc----CCCCC
Confidence 47999999999999999999999999883 2 3899999999999999977543 222211 12357
Q ss_pred ccccCCcCcchHHHHHHHHhcCcccceecccCC-CccccCCCCCcHHHHHHHHHccccch-hh--HHhhhHHHHHHHHHh
Q 004172 399 FIDIDKINPDAWPALLADLTAGEQGIIALAFGC-TRLFQPDKPVTNAQAAVALAIGEASD-AV--NEELQRIEAESAAEN 474 (770)
Q Consensus 399 F~DadkIs~~A~~AVa~dL~aGd~gII~~vfG~-t~~FqPnkPVTRAEAAAaL~sG~~~e-~v--~eEl~r~EAe~~A~~ 474 (770)
|.|+. +.|+.++|......| || .|+ ++ |+|+++|||+|+|++|++.-.-+ .. .....+.|...+ .|
T Consensus 66 F~Dv~--~~w~~~~i~~a~~~G---ii---~g~~~~-F~P~~~iTR~e~a~~l~r~~~~~~~~~~~~~~~f~D~~~i-~w 135 (203)
T 3pyw_A 66 FADSQ--GQWYTPFIAAVEKAG---VI---KGTGNG-FEPNGKIDRVSMASLLVEAYKLDTKVNGTPATKFKDLETL-NW 135 (203)
T ss_dssp CGGGC--SSTTHHHHHHHHHTT---SS---CCCSSC-CCTTSBCBHHHHHHHHHHHHTGGGGSSSCCCCCCHHHHTC-SS
T ss_pred CCCCC--cHHHHHHHHHHHHCc---Ce---ecCCCC-CCCCCcccHHHHHHHHHHHhccccccccccCCCCCCCCcc-HH
Confidence 99985 789999998777654 55 343 45 99999999999999998431111 00 112467888888 89
Q ss_pred HHHHHHHHHHHH--hhhhhhccchhhhHHHhhHHH
Q 004172 475 AVSEHSALVAEV--EKEINESFEKELSMEREKIDV 507 (770)
Q Consensus 475 Av~a~~~l~~~~--~gdi~~~F~~~~~~eR~~~~~ 507 (770)
+..++..+...+ .|+- +.|.|...++|...-.
T Consensus 136 a~~~v~~~~~~Gi~~g~~-~~f~P~~~iTRaE~A~ 169 (203)
T 3pyw_A 136 GKEKANILVELGISVGTG-DQWEPKKTVTKAEAAQ 169 (203)
T ss_dssp SHHHHHHHHHTTCSCCCS-SCCCTTSBCBHHHHHH
T ss_pred HHHHHHHHHHCcCEeCCC-CCcCCCCCCcHHHHHH
Confidence 999999999887 6665 4899999999976544
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.56 E-value=2.5e-16 Score=180.02 Aligned_cols=159 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCccCCCCCCCChHHHHHHHHcCCcccccccccCCCCCCCCcccCCCCcCcHHHHHHHHHHHhccCCchhhHhhhhcccC
Q 004172 319 LAFDDITPEDPDFSSIQGLAEAGLISSKLSHRDLLNEEPGPIFFLPESPLSRQDLVSWKMALEKRQLPEANKKILYQLSG 398 (770)
Q Consensus 319 ~AF~DV~~sdPyf~yIQaAAEAGIIsGklSG~~~~~~~dG~~tF~PD~PITRQELAawkvaLe~~~Lp~ad~k~l~~~~~ 398 (770)
+.|.||+. || +.+|+.|++.|||.|+. +++|+|+++|||+|++.|++++- +++... .....
T Consensus 2 ASFsDV~g-HW-keaIe~LaekGIIkGY~-----------DGTFrPdkpITRAEFAaMLvRAL--GLe~~s----aas~s 62 (892)
T 4aq1_A 2 ASFTDVAP-QY-KDAIDFLVSTGATKGKT-----------ETKFGVYDEITRLDAAVILARVL--KLDVGN----AKDAG 62 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCCH-HH-HHHHHHHHHCCCEeeCC-----------CCcCCCCcchhHHHHHHHHHHHh--CCCccc----ccCCC
Confidence 47999975 77 99999999999999883 23899999999999999876432 222211 12357
Q ss_pred ccccCCcCcchHHHHHHHHhcCcccceecccCCCccccCCCCCcHHHHHHHHHccccchhhHHhhhHHHHHHHHHhHHHH
Q 004172 399 FIDIDKINPDAWPALLADLTAGEQGIIALAFGCTRLFQPDKPVTNAQAAVALAIGEASDAVNEELQRIEAESAAENAVSE 478 (770)
Q Consensus 399 F~DadkIs~~A~~AVa~dL~aGd~gII~~vfG~t~~FqPnkPVTRAEAAAaL~sG~~~e~v~eEl~r~EAe~~A~~Av~a 478 (770)
|.|+ ++|++++|...... |||.+. .++.|+|++++||+|+|+||++.-.-........+.|... .|| .+
T Consensus 63 FSDV---p~Wya~yIaaAvea---GIIsGy--~DGTFrPnqpITRAEaAvMLvRALgL~~~~~~ssFkDV~s--~WA-ea 131 (892)
T 4aq1_A 63 FTDV---PKDRAKYVNALVEA---GVLNGK--APGKFGAYDPLTRVEMAKIIANAHKLKADDVKLPFTDVND--TWA-PY 131 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcC---CHHHHHHHHHHHHC---CCEecC--CCCcCCCCCCccHHHHHHHHHHHhCCCCccccCCccCCcH--HHH-HH
Confidence 9985 57888887665543 455332 2578999999999999999995522222223455666654 488 77
Q ss_pred HHHHHHHH--hhhhhhccchhhhHHHhhHHH
Q 004172 479 HSALVAEV--EKEINESFEKELSMEREKIDV 507 (770)
Q Consensus 479 ~~~l~~~~--~gdi~~~F~~~~~~eR~~~~~ 507 (770)
+..+.+.+ .|.-++.|+|...++|...-.
T Consensus 132 IaaAve~GIIsGy~DGtFrPn~~ITRAEAAv 162 (892)
T 4aq1_A 132 VKALYKYEVTKGKTPTSFGAYQNITRGDFAQ 162 (892)
T ss_dssp -------------------------------
T ss_pred HHHHHHcCCeecCCCCcCCCCCcccHHHHHH
Confidence 77777776 777778999999999975433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.50 E-value=0.17 Score=61.22 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=10.5
Q ss_pred CCCceeEeeccCCCCcc
Q 004172 175 SSSSMEVHDLNKNGSSG 191 (770)
Q Consensus 175 ~~s~~~v~~~~~~gs~~ 191 (770)
---|+.|| ||.+|.+.
T Consensus 247 fgk~~~i~-f~~~g~i~ 262 (1184)
T 1i84_S 247 FGKFIRIN-FDVTGYIV 262 (1184)
T ss_dssp SCEEEEEE-ECSSSCEE
T ss_pred cceeEEEE-ECCCCCEe
Confidence 34577776 77777654
No 6
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=90.52 E-value=9.6 Score=34.70 Aligned_cols=100 Identities=24% Similarity=0.332 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 004172 479 HSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL 558 (770)
Q Consensus 479 ~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~ 558 (770)
|..|+.+. +|+ .+.+...|.--.++++.-.+.-.++++++ ...-.-++.|+..|-.|+.|+..-.
T Consensus 3 Hi~LLRK~-aE~----~KqL~~~~q~~~e~e~~k~eL~~~~~~~~----------~~~~~k~~eq~~~le~lk~eL~~~~ 67 (107)
T 2no2_A 3 HADLLRKN-AEV----TKQVSMARQAQVDLEREKKELEDSLERIS----------DQGQRKTQEQLEVLESLKQELATSQ 67 (107)
T ss_dssp HHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555552 455 34556667767777777777777776666 2223345667788888888888776
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004172 559 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 559 q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
+-|-. |+.-+...+.....++.....|+.||.+|.
T Consensus 68 ~el~~-----------lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 68 RELQV-----------LQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544 555555555666667777788888888875
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.58 E-value=5.8 Score=43.30 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004172 570 YEKERINMLRKEAENENQEIARLQYELEVERKALSMA 606 (770)
Q Consensus 570 ~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~ 606 (770)
..++.++++..+++.-.+++.+++-.++..|+.+.-+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 3444444444444444444445555555555544433
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.91 E-value=13 Score=34.37 Aligned_cols=75 Identities=19% Similarity=0.324 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004172 521 RLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 521 ~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
..|.+-+..+..|+.++..+--+.+.=..+-.+.++++.+|...+.+.- .-..+++.+.+...+.-..|.++|
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe-------~~l~el~~rleeeee~~~~L~~~k 106 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE-------AKVKEMNKRLEDEEEMNAELTAKK 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667788888888777777777777888999999987766544 333344444444444444444444
Q ss_pred HH
Q 004172 601 KA 602 (770)
Q Consensus 601 ~A 602 (770)
+=
T Consensus 107 kk 108 (129)
T 2fxo_A 107 RK 108 (129)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.43 E-value=19 Score=48.57 Aligned_cols=67 Identities=10% Similarity=0.177 Sum_probs=34.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceeh
Q 004172 502 REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEI 568 (770)
Q Consensus 502 R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~ 568 (770)
.+...++.+-+.+-..+|++-..+-++-+..+.++++..+.+++.....+.++.++-+.+...|.++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~ 1999 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555544445555555556666666666555555555555555444444433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.79 E-value=47 Score=44.97 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004172 549 KLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 549 ~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
.-..+|++|-+.|+..+.++..=+..-+++..+++.+.+++.+.|.+.+.++
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~ 1982 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQ 1982 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444444444444444444555544444444444443333
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.13 E-value=9.5 Score=46.28 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004172 572 KERINMLRKEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 572 ~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
++++++++.+++.+...+...+..|+.+...|.
T Consensus 1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444444444444444443333
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.94 E-value=12 Score=40.91 Aligned_cols=57 Identities=12% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004172 541 ESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 541 e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
..+.+.+..++.++++..+.+...+.+....++++.+...+++.+++.+.+..-.++
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 529 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 345667778888888888888877777777777777777777666665554433333
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.26 E-value=37 Score=34.18 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=21.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHH
Q 004172 501 EREKIDVVEKMAEEARQELERLRAEREVDKIAL-----MKERAAIESEMEILSK 549 (770)
Q Consensus 501 eR~~~~~vek~~~~~~~ele~~r~~re~e~~~l-----lKeraa~e~e~~~L~~ 549 (770)
-+..+..+++.......+++..+....+....+ -||-.++..|.+.+..
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~ 104 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKE 104 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344444455555455555554444333333322 2444455555444443
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=84.18 E-value=2.5 Score=51.22 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=4.5
Q ss_pred Cccccccccc
Q 004172 156 PSTIKNVEQS 165 (770)
Q Consensus 156 ~~~~~~~~~~ 165 (770)
+++++|+|.+
T Consensus 236 AkT~rN~NSS 245 (1184)
T 1i84_S 236 AKTVKNDNSS 245 (1184)
T ss_dssp EEETTEEEEE
T ss_pred CcCCCCcccc
Confidence 4444444443
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.89 E-value=8.6 Score=46.62 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004172 540 IESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 540 ~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
++.+.+.|..+..|....-+.+.+..-++...++.++++.++.+.-.+.+.+++.+|+
T Consensus 965 L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444555555555666666666666665555555555555
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.77 E-value=10 Score=43.04 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHH
Q 004172 550 LRREVEEQLESLMSNKVEISYEKERINMLRKEAENE 585 (770)
Q Consensus 550 lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~ 585 (770)
|+.+|+.|+++|...+-.|-.=...||||..+|.-+
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444433
No 17
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=75.10 E-value=12 Score=34.74 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHHHHHHHhhhcceehhhHHHHHH
Q 004172 544 MEILSKLRREVEEQLESLMSNKVEISYEKERIN 576 (770)
Q Consensus 544 ~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~ 576 (770)
.+.++.++.+|-++|..|+-.+-.|.+|=.+|+
T Consensus 65 qq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ 97 (112)
T 1x79_B 65 QQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888999888887777777655554
No 18
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=74.18 E-value=4.7 Score=45.58 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHhh-hhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhh
Q 004172 501 EREKIDVVEKMAEEARQELERLRAERE---------VDKIALMK-ERAAIESEMEILSKLRREVEEQLESLMSNKVEISY 570 (770)
Q Consensus 501 eR~~~~~vek~~~~~~~ele~~r~~re---------~e~~~llK-eraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~ 570 (770)
||....++|+--++...-|..+..+-. .+.+.+|- ++.-.+.|.++|.+-+.|.+++.++|......-..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~ 405 (575)
T 2i1j_A 326 EIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAA 405 (575)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444455555544444444444333332 23333333 34456788899999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004172 571 EKERINMLRKEAENENQEIAR 591 (770)
Q Consensus 571 E~~~l~kl~~~~e~~~~~~~~ 591 (770)
|+++|+.-..+.+.+-..+.+
T Consensus 406 e~~~l~~~~~~~~~~~~~~~~ 426 (575)
T 2i1j_A 406 ERQKLEDEIRAKQEEVSRIQQ 426 (575)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888876555555544444433
No 19
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=73.72 E-value=73 Score=31.45 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=44.8
Q ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehh
Q 004172 496 KELSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEIS 569 (770)
Q Consensus 496 ~~~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~ 569 (770)
+-+.+-+.+.++.||.+-+.+-.||.++..-.+..+++=|- ..+-++=+.-||+++|. .-.|+++-.|
T Consensus 9 ~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~---~~h~~~k~~qlre~~d~---gtt~~~i~~m 76 (169)
T 3k29_A 9 PVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKV---KNHYMQKIRQLREQLDD---GTTSDAILKM 76 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc---CCCcHHHHHH
Confidence 44567788899999999999999999887654444443332 23444557778877764 4444444444
No 20
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum}
Probab=68.43 E-value=2.3 Score=37.06 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=39.3
Q ss_pred cccCCCcccccccc--cCCCc--cccCCCCCceeEeeccCCCC-cc---c------cc---cCCcccccccccccc
Q 004172 151 ETVASPSTIKNVEQ--SEKPL--LSGEDSSSSMEVHDLNKNGS-SG---T------SV---SPSIFPFSNEKETCD 209 (770)
Q Consensus 151 e~~~a~~~~~~~~~--~~~~~--~~~~d~~s~~~v~~~~~~gs-~~---t------~~---~~~~~~~ty~~~~~d 209 (770)
.+|.+|..+.+... ...+. |...++..+|.|||-...|. .. + |. -..+-.|.|.++++|
T Consensus 3 ~~P~aP~~l~a~~~~~~~~v~LsW~~~~~~~~Y~VyR~~~~~~~~~~i~~~~~~tsy~d~~l~~g~~Y~Y~V~Avn 78 (103)
T 3mpc_A 3 SAPAFPTGLSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAVS 78 (103)
T ss_dssp CCCCCCEEEEEEECTTSCCEEEEEECCTTCSEEEEEEESSTTCCCEEEEEEECSSEEEETTCCTTCCCEEEEEEEE
T ss_pred cCCCCCceeEEEEeCCCCEEEEEEECCCCCCEEEEEEecCCCCCcEEEeecCCCCEEEECCCCCCCEEEEEEEEEe
Confidence 35788988888753 23555 99999999999999876332 11 1 11 112223888888888
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.43 E-value=57 Score=30.00 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Q 004172 573 ERINMLRKEAEN---ENQEIARLQYELEVERKALS 604 (770)
Q Consensus 573 ~~l~kl~~~~e~---~~~~~~~~k~~LE~Ek~AL~ 604 (770)
..|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 91 ~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYR 125 (131)
T 3tnu_A 91 EQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666664 56789999999999987654
No 22
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=63.48 E-value=98 Score=28.96 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHH
Q 004172 666 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFIS-------NLKKWASKASMRAAELKDA 723 (770)
Q Consensus 666 ~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~-------~~~~~~~~~~~~~~~~~~~ 723 (770)
.+.-++.|+.|.+.+..++...- ..|..|+..-..||. .|++++..+..+...|.+.
T Consensus 140 dl~~v~~ll~kh~~~~~el~~~~-~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~ 203 (216)
T 1u5p_A 140 DLTGVQNLRKKHKRLEAELAAHE-PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQL 203 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999888887543 356677777777764 4555555555555555554
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.27 E-value=1.1e+02 Score=28.81 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004172 571 EKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 571 E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
=+..+++|+.++..-+..+.+|+.+|+
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544444
No 24
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=60.78 E-value=63 Score=30.55 Aligned_cols=97 Identities=8% Similarity=0.129 Sum_probs=60.6
Q ss_pred cchHHHHHhHHHHHHHHHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhH
Q 004172 661 FSVDQTVSRAQSLVDKLKAMANDVSG--------KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSV 732 (770)
Q Consensus 661 ~~~~~~~~ra~~~~~k~~~~~~~~~~--------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (770)
..+..-|.+....+.+|+.+-..+.+ ..++-|+.+++.|..++..++..+..+.....+... .........
T Consensus 12 ~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~~~r~-~k~~~~~L~ 90 (196)
T 1fio_A 12 SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTN-KQAQAENSR 90 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhH-HHHHHHHHH
Confidence 34566678888888888888776442 345667777777777777777777766654422111 122334455
Q ss_pred HHHHHhHHHHhhhhcccchhhhhhhhhhHH
Q 004172 733 QELQQSTAEFRSNLTEGAKRVAGDCREGVE 762 (770)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~ 762 (770)
+.++....+|...- ....+.||.-+.
T Consensus 91 ~~f~~~~~~fq~~Q----~~~~~~~k~~~~ 116 (196)
T 1fio_A 91 QRFLKLIQDYRIVD----SNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 66666666666555 556666766554
No 25
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=59.50 E-value=26 Score=33.78 Aligned_cols=90 Identities=23% Similarity=0.308 Sum_probs=76.2
Q ss_pred HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhhcccchhhh
Q 004172 675 DKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDATILKAKGSVQELQQSTAEFRSNLTEGAKRVA 754 (770)
Q Consensus 675 ~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 754 (770)
.-|+.--.|.+||.++.|..--+.|..--.-||.---.+.+++..|+|.-..-+...+++.|.-+-++++.+-+--++++
T Consensus 59 ~slq~al~dangkakeALEq~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLa 138 (166)
T 1eq1_A 59 SSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLA 138 (166)
T ss_dssp HHHHHHHTTCSSTHHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhh
Confidence 34444556788999999999999998888889888888899999999988888888999999999999999999989888
Q ss_pred hhhhhhHHhh
Q 004172 755 GDCREGVEKL 764 (770)
Q Consensus 755 ~~c~~~v~k~ 764 (770)
--.++..+.|
T Consensus 139 PkiK~Ay~dF 148 (166)
T 1eq1_A 139 PKIKQAYDDF 148 (166)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8777765554
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.08 E-value=1.8e+02 Score=29.24 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=4.7
Q ss_pred HHHhhcCcEEE
Q 004172 629 DRWERQGIKVV 639 (770)
Q Consensus 629 ~rW~~~gi~v~ 639 (770)
|+|. +|+=||
T Consensus 185 r~~~-~g~avv 194 (256)
T 3na7_A 185 RRWA-KNTSIV 194 (256)
T ss_dssp HHHH-GGGSEE
T ss_pred HHhC-CCceEE
Confidence 3455 555433
No 27
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.01 E-value=49 Score=26.91 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004172 574 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQA 621 (770)
Q Consensus 574 ~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A 621 (770)
.+++|..+++.=...|..|++ +..+|.-.-.=+.+||.|+.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777666666666666 33344433346789999998874
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.50 E-value=1.9e+02 Score=30.83 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH------------HHHHHHHhhhcceehhhHHHHHHHHH
Q 004172 512 AEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRRE------------VEEQLESLMSNKVEISYEKERINMLR 579 (770)
Q Consensus 512 ~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~e------------vde~~q~l~s~~~~~~~E~~~l~kl~ 579 (770)
++..+-.|++.+.+-++.....-++.+.++.+++.+..--+. +.....+.-....+.-.|++++..+.
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW 437 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004172 580 KEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEG 626 (770)
Q Consensus 580 ~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLee 626 (770)
+.+..+.+.+.+-+..|+-|-.=+...=.=+.+.-+-+-.|..+|.+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
No 29
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=47.13 E-value=2e+02 Score=27.58 Aligned_cols=106 Identities=10% Similarity=0.138 Sum_probs=52.4
Q ss_pred hHHHHHhHHHHHHHHHHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHhhhh
Q 004172 663 VDQTVSRAQSLVDKLKAMANDVS------GKSKEIINTIIHKILLFISNLKKWASKASMRAAELKDAT-----ILKAKGS 731 (770)
Q Consensus 663 ~~~~~~ra~~~~~k~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 731 (770)
+...|..-...++.|..++..+. ....+-++.+++.|..++..++..+..+........... +.-....
T Consensus 52 i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~i~~~~~q 131 (279)
T 3c98_B 52 IRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQ 131 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHH
Confidence 33444444555555555544432 234455677777777777666665555544333222110 0000111
Q ss_pred HHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhc
Q 004172 732 VQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF 768 (770)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~k~~~~f 768 (770)
..-|............+--++++.-|++-|.+++++.
T Consensus 132 tn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~ 168 (279)
T 3c98_B 132 HSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEIT 168 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122223333333344444667778888888888765
No 30
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=47.08 E-value=3.7e+02 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHhHHHHHHH
Q 004172 577 MLRKEAENENQEIARLQYELEVERKALSMA---RAWAEDEAKR 616 (770)
Q Consensus 577 kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~---R~W~EdEA~~ 616 (770)
..+.|+.+++-....++-++---+-||+.+ |-=.||+.|-
T Consensus 399 ~~~~dv~~~~a~~d~~~~~~s~~~~~ls~~me~Rkq~e~k~k~ 441 (551)
T 2b5u_A 399 RAQTDVNNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRS 441 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhhhhhhcccchhhhhhh
Confidence 333444444444444444555555566665 5555555554
No 31
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.99 E-value=1.4e+02 Score=25.90 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 004172 579 RKEAENENQEIARLQYELEVERK 601 (770)
Q Consensus 579 ~~~~e~~~~~~~~~k~~LE~Ek~ 601 (770)
..+++.....+...|.+||...+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 32
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=43.70 E-value=2.5e+02 Score=27.67 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 004172 528 VDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMAR 607 (770)
Q Consensus 528 ~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R 607 (770)
.....+|++--.++.+......--.+|..+-+.|.... -++...|......+...-+.+..+
T Consensus 36 ~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~---~~~~~~i~~~~~~l~~~w~~L~~~--------------- 97 (322)
T 1u4q_A 36 ASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSS---AFDTSQVKDKRETINGRFQRIKSM--------------- 97 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCC---SSCTHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcCCccccccccchhhhc----ccccchHHHHHhHHHHHHHHHHhhhh
Q 004172 608 AWAEDEAKRAREQAKALEGARDRWERQGIKVVVDKDLREESDAAVMWVNA----GKQFSVDQTVSRAQSLVDKLKAMAND 683 (770)
Q Consensus 608 ~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~~~~~~~~~~~~w~~~----~~~~~~~~~~~ra~~~~~k~~~~~~~ 683 (770)
+.+|-..||++..-|. |..+...-..|+.. -...++-..+..++.++.|.+.+..+
T Consensus 98 ---------~~~R~~~Le~~~~l~~-----------f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~e 157 (322)
T 1u4q_A 98 ---------AAARRAKLNESHRLHQ-----------FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAE 157 (322)
T ss_dssp ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Q ss_pred cccchHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHH
Q 004172 684 VSGKSKEIINTIIHKILLFI-------SNLKKWASKASMRAAELKDATILK 727 (770)
Q Consensus 684 ~~~~~~~~~~~~~~~i~~~i-------~~~~~~~~~~~~~~~~~~~~~~~~ 727 (770)
|..... .|..+...-..|+ ..|+++...+..+...|.+.+..+
T Consensus 158 l~~~~~-~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R 207 (322)
T 1u4q_A 158 LAAHEP-AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAAR 207 (322)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 33
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.67 E-value=22 Score=27.21 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 004172 576 NMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 576 ~kl~~~~e~~~~~~~~~k~~LE 597 (770)
+||.++++.|.++|.+||.+-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 6899999999999999998644
No 34
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=40.75 E-value=1.4e+02 Score=34.15 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=7.3
Q ss_pred CCccHHHHHHHHH
Q 004172 281 DLCIRREYARWLV 293 (770)
Q Consensus 281 ~pITRaEFArwLV 293 (770)
.++|=..|+.++-
T Consensus 286 ~~vtG~~L~~l~~ 298 (592)
T 1f5n_A 286 IQVNGPRLESLVL 298 (592)
T ss_dssp EECBHHHHHHHHH
T ss_pred ccccHHHHHHHHH
Confidence 4666665655543
No 35
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=38.44 E-value=2.2e+02 Score=28.68 Aligned_cols=96 Identities=3% Similarity=0.063 Sum_probs=62.4
Q ss_pred ccchHHHHHhHHHHHHHHHHhhhhccc--------chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------
Q 004172 660 QFSVDQTVSRAQSLVDKLKAMANDVSG--------KSKEIINTIIHKILLFISNLKKWASKASMRAAELKDA-------- 723 (770)
Q Consensus 660 ~~~~~~~~~ra~~~~~k~~~~~~~~~~--------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-------- 723 (770)
...+..-|.+-...|.+|+.+.....+ ..+.-|+.+++.|..++..++..+..+...+..+...
T Consensus 50 ~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~ 129 (279)
T 2xhe_B 50 VKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTV 129 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Confidence 345667788888889999999876543 3466788888888888888888888887766543221
Q ss_pred ------HHHHhhhhHHHHHHhHHHHhhhhcccchhhhhhhhh
Q 004172 724 ------TILKAKGSVQELQQSTAEFRSNLTEGAKRVAGDCRE 759 (770)
Q Consensus 724 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~ 759 (770)
...........++....+|...- +...+.||.
T Consensus 130 ~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q----~~y~e~~k~ 167 (279)
T 2xhe_B 130 STDLRIRQSQHSSLSRKFVKVMTRYNDVQ----AENKRRYGE 167 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 12223344456666666665544 334455554
No 36
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=38.36 E-value=96 Score=28.98 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 004172 516 RQELERLRAEREVDKI--ALMKERAAIESEMEILSKLRREVEEQLESLMS 563 (770)
Q Consensus 516 ~~ele~~r~~re~e~~--~llKeraa~e~e~~~L~~lr~evde~~q~l~s 563 (770)
.+||+|+|-+.+.-.- +-.|-+--.||+++ +-.+|++-|.++|.+-+
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E-~ae~k~KYD~~lqe~es 86 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERK-MAEVQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5677777776654433 44455556677776 67788888888877643
No 37
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=37.84 E-value=2.7e+02 Score=26.40 Aligned_cols=52 Identities=31% Similarity=0.387 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 004172 526 REVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 526 re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
|..-.+.+-..+.-+..+.+++..+..++.+.|..+..+ -+ | ++-|.+|..+
T Consensus 58 r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~L~~~~~~-~~--Y-~~~L~~Li~e 109 (187)
T 3v6i_A 58 RAESAGELLVATARTQARGEVLEEVRRRVREALEALPQK-PE--W-PEVVRKLALE 109 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGS-TT--H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-cc--H-HHHHHHHHHH
Confidence 444445555666777888899999999999999998876 12 2 4566666655
No 38
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.49 E-value=60 Score=36.72 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhhcc
Q 004172 671 QSLVDKLKAMANDVS 685 (770)
Q Consensus 671 ~~~~~k~~~~~~~~~ 685 (770)
+.|-++|+.|..++.
T Consensus 514 ~~lq~qL~~L~~el~ 528 (575)
T 2i1j_A 514 ERLHNQLKALKQDLA 528 (575)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777776654
No 39
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=36.21 E-value=1.7e+02 Score=26.52 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004172 570 YEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 570 ~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
...+.|++|+.+++.+..+|..+|..|+
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~ 78 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888877776554
No 40
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.11 E-value=2.4e+02 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=19.6
Q ss_pred hhhhcccccchHHHHHhHHHHHHHHH
Q 004172 653 MWVNAGKQFSVDQTVSRAQSLVDKLK 678 (770)
Q Consensus 653 ~w~~~~~~~~~~~~~~ra~~~~~k~~ 678 (770)
-.++-|...-|+.++.-|..++++=.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~ 97 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQK 97 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHH
Confidence 44557888999999999977776533
No 41
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=35.63 E-value=2.2e+02 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=23.8
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004172 565 KVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMA 606 (770)
Q Consensus 565 ~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~ 606 (770)
+..+..|..+|..-..+-......+..-+..++.|-+-|+-.
T Consensus 53 ~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 53 LSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555554444444445555566667777777777644
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.79 E-value=2.8e+02 Score=31.85 Aligned_cols=70 Identities=11% Similarity=0.334 Sum_probs=46.0
Q ss_pred HHHHHHhhhhhHHHHHHHH-HHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004172 528 VDKIALMKERAAIESEMEI-LSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 528 ~e~~~llKeraa~e~e~~~-L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
+.+.++||+|.....+++- ...+-+|++.+++.| |.+|-.-..+|+.|++-|+..+.+|.+|...+.+-.
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyL---KekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVL---KRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778887776665543 223333555555544 556666668899999999999999988766655433
No 43
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.59 E-value=1.5e+02 Score=27.44 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004172 504 KIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEI 546 (770)
Q Consensus 504 ~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~ 546 (770)
.|+.+-+-.+..+.||++++.+.......|...=..|++|...
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556667777777777666666555544445544443
No 44
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=32.20 E-value=2.8e+02 Score=31.44 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHH
Q 004172 555 EEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAED 612 (770)
Q Consensus 555 de~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~Ed 612 (770)
+.|.+.|..-++-=.. +...+||.++.+...+++.+++..|..+.+-..+.+.+.++
T Consensus 437 e~qa~~IL~m~L~rLT-~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~ 493 (514)
T 2inr_A 437 EEQAEAIVMLQLYRLT-NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNE 493 (514)
T ss_dssp HHHHHHHHTCCGGGGS-TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4567777766654333 44678999999999999999999999998888887777654
No 45
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.16 E-value=1.2e+02 Score=26.93 Aligned_cols=51 Identities=25% Similarity=0.310 Sum_probs=31.6
Q ss_pred HHHHHhHHHHHHHH-HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004172 545 EILSKLRREVEEQL-ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYEL 596 (770)
Q Consensus 545 ~~L~~lr~evde~~-q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~L 596 (770)
|.+..||.-|.||= ++|-.++ ..-.=|+-|.-|+..++.+..+|.+++.+|
T Consensus 26 qEi~~Lr~kv~elEnErlQyEk-KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEW-KLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44556666665541 2222222 111223678888899999999999998876
No 46
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=32.14 E-value=1.7e+02 Score=28.60 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=33.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHH
Q 004172 498 LSMEREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINM 577 (770)
Q Consensus 498 ~~~eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~k 577 (770)
+..+-++...+.++.++.+.+...+ ++-|..+|.|+ +.|.+.. .+++..|.+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~L---------------------r~ql~akr~EL----~aL~~a~---~~DeakI~a 117 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSAL---------------------RQQLISKRYEY----NALLTAS---SPDTAKINA 117 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH----HHHHTSS---SCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH----HHHHhCC---CCCHHHHHH
Confidence 4567777777777776655543221 23344444443 3343321 256667777
Q ss_pred HHHHHHHHHHHHH
Q 004172 578 LRKEAENENQEIA 590 (770)
Q Consensus 578 l~~~~e~~~~~~~ 590 (770)
|.+++...++.+.
T Consensus 118 L~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 118 VAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766655554443
No 47
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=31.89 E-value=2.7e+02 Score=26.62 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=7.5
Q ss_pred hhhhHHHHHHhHHHHhhhhc
Q 004172 728 AKGSVQELQQSTAEFRSNLT 747 (770)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~ 747 (770)
....+.+++....-+...+.
T Consensus 109 ~~~~~e~lr~~l~Py~~el~ 128 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQ 128 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 33333334333333333333
No 48
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=31.54 E-value=4.7e+02 Score=27.28 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004172 668 SRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKKWASKA 713 (770)
Q Consensus 668 ~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 713 (770)
.+|-.+.++++.+-..=---.+++|.++-..+...+....+-..+.
T Consensus 202 s~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~ 247 (287)
T 3g9g_A 202 QQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETV 247 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888777655444455666666655555555544444333
No 49
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.80 E-value=2.8e+02 Score=24.56 Aligned_cols=74 Identities=15% Similarity=0.251 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHH
Q 004172 525 EREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAEN---ENQEIARLQYELEVERK 601 (770)
Q Consensus 525 ~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~---~~~~~~~~k~~LE~Ek~ 601 (770)
-|+.....|-+.++++|++...+-.--..--+++|...+. =...|..++.+++. +.|.+.+.|--|+.|..
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~------lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD------KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777778888877665544322222233332221 13345566666654 45789999999999976
Q ss_pred HHH
Q 004172 602 ALS 604 (770)
Q Consensus 602 AL~ 604 (770)
+-+
T Consensus 83 tYr 85 (95)
T 3mov_A 83 AYR 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 50
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=30.70 E-value=1.4e+02 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004172 688 SKEIINTIIHKILLFISNLKKWASK 712 (770)
Q Consensus 688 ~~~~~~~~~~~i~~~i~~~~~~~~~ 712 (770)
..+=|..+...+..++..|++...+
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~ 59 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADD 59 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554444
No 51
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.64 E-value=2e+02 Score=28.27 Aligned_cols=120 Identities=11% Similarity=0.157 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhhhhccchhhhHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHH
Q 004172 477 SEHSALVAEVEKEINESFEKELSMEREKIDVVEKMAEEA----RQELERLRAEREVDKIALMKERAAIESEMEILSKLRR 552 (770)
Q Consensus 477 ~a~~~l~~~~~gdi~~~F~~~~~~eR~~~~~vek~~~~~----~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~ 552 (770)
..|.++++.++--|+.+++.......++++..+..++.+ ..+|..-...-+.....|-+++..++.+.+.|..=..
T Consensus 8 ~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 8 TNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888887777766666666666655554332 3444444444444444555555555555555544222
Q ss_pred HHHHHHHHhh-hcc---eehhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004172 553 EVEEQLESLM-SNK---VEISYEKERINMLRKEAENENQEIARLQYELE 597 (770)
Q Consensus 553 evde~~q~l~-s~~---~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE 597 (770)
++++.... . ++. =+++.+..-+.+..=++-.+..+|.++=|.|.
T Consensus 88 k~~e~~~~-~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~ 135 (174)
T 2p22_A 88 KVQQFSST-SHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS 135 (174)
T ss_dssp HHHHHTTS-SCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222211 1 011 12344555666777778888888888888886
No 52
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=30.63 E-value=6.6e+02 Score=28.73 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEEcC---Cccccccccchhhhccccc----chHHHHHhHH
Q 004172 599 ERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVVDK---DLREESDAAVMWVNAGKQF----SVDQTVSRAQ 671 (770)
Q Consensus 599 Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~vd~---~~~~~~~~~~~w~~~~~~~----~~~~~~~ra~ 671 (770)
....-.+-+.|-.=. ..+.+|...|+++...++. +|. .|..++..-..|+...... .+-+.+.-++
T Consensus 449 ~~~~~~l~~~W~~L~-~~~~~R~~~L~~~l~~~q~------~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve 521 (863)
T 1sjj_A 449 NARCQKICDQWDNLG-ALTQKRREALERTEKLLET------IDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQ 521 (863)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHH
Confidence 334444556674333 3455667777777766642 111 2334444455565432211 1112223356
Q ss_pred HHHHHHHHhhhhcc
Q 004172 672 SLVDKLKAMANDVS 685 (770)
Q Consensus 672 ~~~~k~~~~~~~~~ 685 (770)
.|+.|.+.+..++.
T Consensus 522 ~ll~kh~~~~~~l~ 535 (863)
T 1sjj_A 522 GLTTAHEQFKATLP 535 (863)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhHHH
Confidence 66666666666654
No 53
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=30.32 E-value=2.9e+02 Score=24.46 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 004172 514 EARQELERLRAEREVDKIALMKERAAIESEMEIL 547 (770)
Q Consensus 514 ~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L 547 (770)
..+..|......-..++..+.|++++++.+...|
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~l 44 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKV 44 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344455555555556666666666666665544
No 54
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.36 E-value=1.4e+02 Score=26.07 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=31.7
Q ss_pred HHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004172 556 EQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 603 (770)
Q Consensus 556 e~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL 603 (770)
.|++.+..++..+.-|.++++....+...|-+.=..++..+|.+--+|
T Consensus 7 ~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 7 RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777667666666666666665544
No 55
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.19 E-value=2e+02 Score=28.31 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcceehhhHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004172 542 SEMEILSKLRREVEEQLESLMSNKVEISYEKER-----INMLRKEAENENQEIARLQYELEVERKALSM 605 (770)
Q Consensus 542 ~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~-----l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m 605 (770)
..+++|.+|++.+.++++.+.-.-.+..+..+- |.+-..++....+.+.+.+..||.|+..|.+
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~ 77 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNA 77 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999988877555444443322 2333344444444455555555555544443
No 56
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.08 E-value=3e+02 Score=24.31 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHhhhcceehhhHHHHHHHHHH
Q 004172 548 SKLRREVEEQLESLMSNKVEISYEKERINMLRK 580 (770)
Q Consensus 548 ~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~ 580 (770)
+.++.++-+..+-+-|-...|.|-+..|+||++
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555666667777777777764
No 57
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=29.00 E-value=74 Score=26.97 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.6
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHH
Q 004172 666 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDAT 724 (770)
Q Consensus 666 ~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-------~~~~~~~~~~~~~~~~~~~ 724 (770)
.+..++.|+.|.+.+-.++... .+-|..|++.-..||.. |+++..++..+...|++.+
T Consensus 34 ~l~~v~~Llkkh~~fe~~~~~~-~~~i~~l~~~a~~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~ 98 (107)
T 2spc_A 34 AGGNVEALIKKHEDFDKAINGH-EQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98 (107)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888777643 45666677766777654 6666666666666666553
No 58
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.92 E-value=3.3e+02 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Q 004172 573 ERINMLRKEAEN---ENQEIARLQYELEVERKALS 604 (770)
Q Consensus 573 ~~l~kl~~~~e~---~~~~~~~~k~~LE~Ek~AL~ 604 (770)
..|+.++.+++. +.|.+.++|--|+.|..+-+
T Consensus 89 ~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 89 EALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666654 45789999999999987654
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.65 E-value=5.3e+02 Score=29.35 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=33.6
Q ss_pred hhhhHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHhHHHHHHHHHHhh
Q 004172 496 KELSMEREKIDVVEK---MAEEARQELERLRAEREVDKIALMKE-RAAIESEMEILSKLRREVEEQLESLM 562 (770)
Q Consensus 496 ~~~~~eR~~~~~vek---~~~~~~~ele~~r~~re~e~~~llKe-raa~e~e~~~L~~lr~evde~~q~l~ 562 (770)
.++..||.|.+++|+ ++++-..++++....+++...+-++. +.-||.|++-+ ..|.+.+++.=+
T Consensus 487 k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~---~~e~~~~~~~~~ 554 (592)
T 1f5n_A 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL---LKEQERTLALKL 554 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344566777776663 44445566666666666555444433 22466665533 245454444433
No 60
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=28.45 E-value=3.5e+02 Score=24.90 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=40.6
Q ss_pred HHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHH
Q 004172 666 TVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISN-------LKKWASKASMRAAELKDA 723 (770)
Q Consensus 666 ~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~-------~~~~~~~~~~~~~~~~~~ 723 (770)
.+..++.|+.+.+.+..++... ...|..+...-..||.. |+.+..++..+...|...
T Consensus 137 ~~~~v~~ll~~h~~~~~el~~~-~~~i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~ 200 (213)
T 1cun_A 137 TLAAIQGLLKKHEAFETDFTVH-KDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKA 200 (213)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556688888888888887654 46677777777777763 666777777666666665
No 61
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=27.66 E-value=1.9e+02 Score=25.16 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHHHhhh--hcccchHHHHHHHHHHHHHHHHHHHHHHH
Q 004172 665 QTVSRAQSLVDKLKAMAN--DVSGKSKEIINTIIHKILLFISNLKKWAS 711 (770)
Q Consensus 665 ~~~~ra~~~~~k~~~~~~--~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 711 (770)
++-|.|++++-.++..-. +...+. -..-..+|...|..|++|+.
T Consensus 4 EarN~aE~~iy~~e~~L~~~e~~~kl---~~~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 4 RGSHMLESYAFNMKATVEDEKLQGKI---NDEDKQKILDKCNEIISWLD 49 (113)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGTTTS---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhccC---CHHHHHHHHHHHHHHHHHHH
Confidence 455677777777665443 333221 12223445555566666664
No 62
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=27.09 E-value=3.7e+02 Score=24.67 Aligned_cols=58 Identities=12% Similarity=0.183 Sum_probs=39.7
Q ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHhhhh
Q 004172 674 VDKLKAMANDVS--GKSKEIINTIIHKILLFISNLKKWAS-------KASMRAAELKDATILKAKGS 731 (770)
Q Consensus 674 ~~k~~~~~~~~~--~~~~~~~~~~~~~i~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 731 (770)
++.|..|.++-+ ....++|..|++-...+|..|++-+. .+..-+|.||-++.+.-...
T Consensus 27 ~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~lGa~~ 93 (149)
T 1yvi_A 27 FQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQK 93 (149)
T ss_dssp HHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHHhHHH
Confidence 678888865554 67789999999999999998887653 44556677776655543333
No 63
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.25 E-value=3.2e+02 Score=23.60 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHhHHHH
Q 004172 572 KERINMLRKEAEN---ENQEIARLQYELEVERKALSMARAWAEDE 613 (770)
Q Consensus 572 ~~~l~kl~~~~e~---~~~~~~~~k~~LE~Ek~AL~m~R~W~EdE 613 (770)
..-|.+++.+++. +.|.+.++|--||.|..+- |.+.|.|
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatY---RkLLEGE 82 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY---RKLLEGE 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHcCC
Confidence 3455666666664 5577999999999998665 4555544
No 64
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.78 E-value=3.8e+02 Score=24.32 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=32.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhccee
Q 004172 501 EREKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVE 567 (770)
Q Consensus 501 eR~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~ 567 (770)
=|+++..++.-..++..|+.+|..+-.++.. -|..+|++ +..+..||++..-.|-.+==+
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~----~R~~aE~~---~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENE----LRTKAEEE---ADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555566666665543333322 23344443 345667777777777654333
No 65
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.48 E-value=3.9e+02 Score=25.19 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHH-HHHHHHHHHHH
Q 004172 505 IDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEK-ERINMLRKEAE 583 (770)
Q Consensus 505 ~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~-~~l~kl~~~~e 583 (770)
.+.+|.|++.|.++|+=..-.=|.|...-.-+-|+-+.=..+|.+|+ -|.+-++.|-..=-.|+.|| +-+.+.+.-+.
T Consensus 7 vdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~Ls-aIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~ 85 (123)
T 4aj5_K 7 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELS-VIKSRYQTLYARFKPVAVEQKESKSRICATVK 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888876554444443322222232222233333332 23334444444333566666 66666666666
Q ss_pred HHHHHHHHhHHHH--------HHHHHHHHHHHHhH
Q 004172 584 NENQEIARLQYEL--------EVERKALSMARAWA 610 (770)
Q Consensus 584 ~~~~~~~~~k~~L--------E~Ek~AL~m~R~W~ 610 (770)
.-..-|-++|... |.|+.|...|++..
T Consensus 86 ~tm~miQ~LQ~~td~el~plteeE~~a~~~l~~~~ 120 (123)
T 4aj5_K 86 KTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKFHM 120 (123)
T ss_dssp HHHHHHHHHHHHHCCCCCCCHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHhhC
Confidence 6655555555443 56676766666544
No 66
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.28 E-value=2.8e+02 Score=26.68 Aligned_cols=102 Identities=9% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEE-EcCCccccccccc
Q 004172 574 RINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVV-VDKDLREESDAAV 652 (770)
Q Consensus 574 ~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~-vd~~~~~~~~~~~ 652 (770)
-++--..++-.-+.++.++...+..|+.++ ..|...+++..+++.+.|+.+-..|-...-.-- -..-..+-....+
T Consensus 17 ~~~~alr~ia~l~r~~~~i~~~~n~eI~~i---k~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~elf~k~Kt~~l~~G~v 93 (171)
T 2p2u_A 17 QAEGALAEIATIDRKVGEIEAQMNEAIDAA---KARASQKSAPLLARRKELEDGVATFATLNKTEMFKDRKSLDLGFGTI 93 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC---CCBCSSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCeEEEeCCEEE
Confidence 355566666666677777777777777664 689999999999999999999999986542100 1222334445677
Q ss_pred hhhhcccccchHHHHHhHHHHHHHHHHh
Q 004172 653 MWVNAGKQFSVDQTVSRAQSLVDKLKAM 680 (770)
Q Consensus 653 ~w~~~~~~~~~~~~~~ra~~~~~k~~~~ 680 (770)
.|+.......+.+. -.+.|++.||.+
T Consensus 94 ~~R~~~~~v~~~~~--~~~~vle~Lk~~ 119 (171)
T 2p2u_A 94 GFRLSTQIVQMSKI--TKDMTLERLRQF 119 (171)
T ss_dssp CCCCCCCCCCCTTC--CHHHHHHHHHHT
T ss_pred EEEeCCCccccccC--CHHHHHHHHHHC
Confidence 89987665543111 236677777775
No 67
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.24 E-value=3.9e+02 Score=24.28 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004172 536 ERAAIESEMEILSKLRREVEEQLESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVERKAL 603 (770)
Q Consensus 536 eraa~e~e~~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL 603 (770)
.|..+|.+ |..||..||+..= .|+ .|..+++.=.++|.=+|.--|.|.+.|
T Consensus 63 ~r~~~E~d---i~~lrK~lD~~~l----~r~----------dLE~~iesL~eEl~FLKk~heeEl~eL 113 (119)
T 3ol1_A 63 QREEAENT---LQSFRQDVDNASL----ARL----------DLERKVESLQEEIAFLKKLHEEEIQEL 113 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhcccHHHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666654 4566777765431 111 134444444455555555555555554
No 68
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=25.00 E-value=5.1e+02 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=27.3
Q ss_pred HhhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhc
Q 004172 727 KAKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRF 768 (770)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~k~~~~f 768 (770)
+....+.+++.....+...++.+---++++.+..+..+.+.|
T Consensus 195 kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~ 236 (243)
T 2a01_A 195 KATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEY 236 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444456667766666777777776777777777666655544
No 69
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.69 E-value=2.8e+02 Score=29.97 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=41.2
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhhcCcEEEE
Q 004172 566 VEISYEKERINMLRKEAENENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEGARDRWERQGIKVVV 640 (770)
Q Consensus 566 ~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m~R~W~EdEA~~~~e~A~vLeea~~rW~~~gi~v~v 640 (770)
.++...++.|.+|+.+++...+.+.+++.+++.-++= ..++|..|.+-|-.+.|- +..|+|+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~rr~l~n~~~el------kgnIrV~v 65 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEI------LIKEETVRRTLHNELQEL------RGNIRVYL 65 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH------HCSEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHc------CCCeEEEE
Confidence 3456667777788887777777777777666544332 345666666666666664 56788886
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.14 E-value=3.4e+02 Score=23.89 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHHHHhhhcceehhhHHHHHHHHHHH
Q 004172 545 EILSKLRREVEEQLESLMSNKVEISYEKERINMLRKE 581 (770)
Q Consensus 545 ~~L~~lr~evde~~q~l~s~~~~~~~E~~~l~kl~~~ 581 (770)
++|.+|-..|...++.+..-+.+|-.-|+.-..|..+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888887777777666555554444433
No 71
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=23.68 E-value=2.2e+02 Score=28.55 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=23.7
Q ss_pred hhhhHHHHHHhHHHHhhhhcccchhhhhhhhhhHHhhhhhcc
Q 004172 728 AKGSVQELQQSTAEFRSNLTEGAKRVAGDCREGVEKLTQRFK 769 (770)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~c~~~v~k~~~~fk 769 (770)
+.+.+.+++....-....+.+.....+++.|..+.-+++.+|
T Consensus 174 l~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~p~~e~lk 215 (243)
T 2a01_A 174 LAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLR 215 (243)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555666555555555555555666666666655555544
No 72
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.92 E-value=3.6e+02 Score=26.26 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=7.7
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHH
Q 004172 680 MANDVSGKSKEIINTIIHKILLFISNLK 707 (770)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 707 (770)
++.++..+.-+-+..+-++|..=+..||
T Consensus 85 ~~~e~~~~l~~~~e~lr~~l~kdlEelr 112 (191)
T 1nfn_A 85 VAEETRARLSKELQAAQARLGADMEDVC 112 (191)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 73
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=22.49 E-value=1.6e+02 Score=28.41 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhh
Q 004172 538 AAIESEMEILSKLRREVEEQLESLM 562 (770)
Q Consensus 538 aa~e~e~~~L~~lr~evde~~q~l~ 562 (770)
..+....+.....+.+|+..++.|.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~ 93 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLS 93 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4444444444444444444444443
No 74
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.49 E-value=1.3e+02 Score=22.68 Aligned_cols=26 Identities=19% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004172 580 KEAENENQEIARLQYELEVERKALSM 605 (770)
Q Consensus 580 ~~~e~~~~~~~~~k~~LE~Ek~AL~m 605 (770)
+++|.|-+++..-+|+||.|..-|+-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46788888888999999988776653
No 75
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=22.15 E-value=6.4e+02 Score=28.78 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=10.5
Q ss_pred CCccHHHHHHHHHH
Q 004172 281 DLCIRREYARWLVS 294 (770)
Q Consensus 281 ~pITRaEFArwLVR 294 (770)
-.|||.+|..++--
T Consensus 299 ~~itr~~fe~l~~~ 312 (675)
T 3d2f_A 299 SQLSREELEELVKP 312 (675)
T ss_dssp EEEEHHHHHHHTHH
T ss_pred EEEeHHHHHHHHHH
Confidence 47899999877543
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.11 E-value=7.2e+02 Score=26.28 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhccchhhhHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHH
Q 004172 481 ALVAEVEKEINESFEKELSME--REKIDVVEKMAEEARQELERLRAEREVDKIALMKERAAIESEMEILSKLRREVEEQL 558 (770)
Q Consensus 481 ~l~~~~~gdi~~~F~~~~~~e--R~~~~~vek~~~~~~~ele~~r~~re~e~~~llKeraa~e~e~~~L~~lr~evde~~ 558 (770)
+.+...+..++..+....... |.....++|-+.+++..|-++|+.---++...+-=++.+|.++ .
T Consensus 373 eal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 439 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK-------------A 439 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH-------------H
Q ss_pred HHhhhcceehhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004172 559 ESLMSNKVEISYEKERINMLRKEAENENQEIARLQYELEVER 600 (770)
Q Consensus 559 q~l~s~~~~~~~E~~~l~kl~~~~e~~~~~~~~~k~~LE~Ek 600 (770)
|.+. ||++|..++...++++.++..++|.-|
T Consensus 440 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 440 QGQK-----------KVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
No 77
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=22.02 E-value=4.6e+02 Score=23.95 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH-HhHHHHHHHHHH---HHHHHHHHhHHHhh-cCcEEEEcCCccccc
Q 004172 575 INMLRKEAENENQEIARLQYELEVERKALSM-AR-AWAEDEAKRARE---QAKALEGARDRWER-QGIKVVVDKDLREES 648 (770)
Q Consensus 575 l~kl~~~~e~~~~~~~~~k~~LE~Ek~AL~m-~R-~W~EdEA~~~~e---~A~vLeea~~rW~~-~gi~v~vd~~~~~~~ 648 (770)
+++|..-++.+.+.+..+..-|+.|+.||.- -. .+.+.=+.+.++ +-.-++..|++|.. .|+. .+.
T Consensus 6 ~~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~--------~~~ 77 (154)
T 3opc_A 6 SAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLA--------SGP 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------CCh
Confidence 3667788888888888888889999998877 32 233332333333 23345566666653 3432 121
Q ss_pred cccchhhhcccccchHHHHHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 004172 649 DAAVMWVNAGKQFSVDQTVSRAQSLVDKLKAMANDVSGKSKEIINTIIHKILLFISNLKK 708 (770)
Q Consensus 649 ~~~~~w~~~~~~~~~~~~~~ra~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 708 (770)
..-..|+.. ...+.....+...++.+++.+- +.| -.+|..-+.++..+|..|+.
T Consensus 78 ~g~~~~~~~--~~~l~~~w~~l~~l~~~c~~~N-~~N---g~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 78 AGTDAAAAA--HPELGPLWQALQANAAQAREHN-QRN---GTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp HHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHh
Confidence 111234432 1244555555566666665542 333 35666777777778887774
No 78
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.39 E-value=1.4e+02 Score=22.49 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 004172 580 KEAENENQEIARLQYELEVERKALS 604 (770)
Q Consensus 580 ~~~e~~~~~~~~~k~~LE~Ek~AL~ 604 (770)
+++|.|-+++..-+++||.|..-|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5678888889999999998876664
No 79
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.75 E-value=3.5e+02 Score=25.02 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 004172 515 ARQELERLRAE 525 (770)
Q Consensus 515 ~~~ele~~r~~ 525 (770)
...|++.+|.+
T Consensus 20 Lkreie~lk~e 30 (120)
T 3i00_A 20 LYREISGLKAQ 30 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.62 E-value=4e+02 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Q 004172 572 KERINMLRKEAEN---ENQEIARLQYELEVERKALS 604 (770)
Q Consensus 572 ~~~l~kl~~~~e~---~~~~~~~~k~~LE~Ek~AL~ 604 (770)
...|++++.+++. +.|.+.++|--|+.|..+-+
T Consensus 39 E~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 39 QDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3456667777764 56789999999999986654
No 81
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.29 E-value=1.9e+02 Score=25.64 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=0.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004172 571 EKERINMLR----KEAENENQEIARLQYELEVERKALSMA 606 (770)
Q Consensus 571 E~~~l~kl~----~~~e~~~~~~~~~k~~LE~Ek~AL~m~ 606 (770)
|++.|.+|. .+++...++|.+++..++.-++.|.-+
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!