Query 004173
Match_columns 770
No_of_seqs 335 out of 1346
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 18:49:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906 Phosphatidylinositol 3 100.0 2E-181 4E-186 1482.5 58.4 746 1-770 1-843 (843)
2 KOG0904 Phosphatidylinositol 3 100.0 1E-132 3E-137 1123.5 47.5 644 12-765 339-1075(1076)
3 KOG0905 Phosphoinositide 3-kin 100.0 3E-120 7E-125 1039.9 48.7 613 50-768 653-1348(1639)
4 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1.5E-73 3.3E-78 616.4 30.2 287 472-767 2-354 (354)
5 cd00896 PI3Kc_III Phosphoinosi 100.0 1.1E-71 2.5E-76 606.6 31.7 298 472-769 2-350 (350)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.3E-70 2.8E-75 593.4 29.6 287 471-767 1-353 (353)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 2.3E-70 4.9E-75 594.0 28.9 287 472-767 2-354 (354)
8 cd05175 PI3Kc_IA_alpha Phospho 100.0 7.9E-69 1.7E-73 580.4 27.4 286 473-767 3-366 (366)
9 cd05165 PI3Kc_I Phosphoinositi 100.0 9.4E-69 2E-73 583.7 26.9 288 472-767 2-366 (366)
10 cd05174 PI3Kc_IA_delta Phospho 100.0 3.8E-68 8.3E-73 576.5 28.7 285 472-767 2-361 (361)
11 cd05173 PI3Kc_IA_beta Phosphoi 100.0 1.1E-67 2.4E-72 574.5 29.3 286 472-767 2-361 (362)
12 cd05166 PI3Kc_II Phosphoinosit 100.0 1.3E-67 2.9E-72 574.8 29.6 286 472-767 2-353 (353)
13 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.3E-67 2.8E-72 573.2 28.3 287 472-766 2-364 (365)
14 cd00891 PI3Kc Phosphoinositide 100.0 1.8E-66 3.9E-71 566.8 29.5 286 472-767 2-352 (352)
15 KOG0902 Phosphatidylinositol 4 100.0 5.5E-64 1.2E-68 586.7 36.5 436 310-768 1292-1800(1803)
16 cd05167 PI4Kc_III_alpha Phosph 100.0 1E-60 2.3E-65 511.7 25.0 240 524-768 1-309 (311)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 2.3E-52 4.9E-57 444.2 20.4 229 535-768 2-287 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 2.5E-50 5.5E-55 429.3 19.5 217 548-768 16-291 (293)
19 cd00872 PI3Ka_I Phosphoinositi 100.0 3.4E-49 7.3E-54 389.6 19.7 167 287-457 2-168 (171)
20 cd00870 PI3Ka_III Phosphoinosi 100.0 2.4E-49 5.2E-54 389.8 18.5 159 279-437 1-166 (166)
21 PF00613 PI3Ka: Phosphoinositi 100.0 2.3E-46 4.9E-51 375.6 18.5 176 280-459 1-176 (184)
22 cd00869 PI3Ka_II Phosphoinosit 100.0 6.2E-46 1.3E-50 364.4 19.2 165 287-456 2-167 (169)
23 smart00145 PI3Ka Phosphoinosit 100.0 4.4E-45 9.6E-50 365.4 20.5 169 285-457 4-173 (184)
24 cd00864 PI3Ka Phosphoinositide 100.0 1.1E-41 2.5E-46 331.6 17.4 151 287-437 2-152 (152)
25 KOG0903 Phosphatidylinositol 4 100.0 1.4E-39 3.1E-44 366.6 19.0 205 561-769 586-846 (847)
26 COG5032 TEL1 Phosphatidylinosi 100.0 4.3E-38 9.4E-43 404.7 29.5 477 279-768 1486-2098(2105)
27 cd08397 C2_PI3K_class_III C2 d 100.0 2.2E-38 4.8E-43 310.7 15.4 138 45-183 22-159 (159)
28 cd00892 PIKKc_ATR ATR (Ataxia 100.0 4.2E-37 9.1E-42 320.6 14.1 177 535-716 3-236 (237)
29 cd05172 PIKKc_DNA-PK DNA-depen 100.0 1.6E-36 3.4E-41 315.8 14.1 177 534-716 2-234 (235)
30 cd00142 PI3Kc_like Phosphoinos 100.0 6.6E-36 1.4E-40 308.6 14.2 164 536-709 3-218 (219)
31 cd05169 PIKKc_TOR TOR (Target 100.0 4.6E-35 9.9E-40 313.0 12.9 177 535-716 3-279 (280)
32 cd00871 PI4Ka Phosphoinositide 100.0 3.3E-34 7.2E-39 282.7 16.5 143 291-439 9-152 (175)
33 cd05164 PIKKc Phosphoinositide 100.0 1E-34 2.2E-39 300.1 13.0 164 535-709 3-221 (222)
34 cd05171 PIKKc_ATM Ataxia telan 100.0 4E-34 8.6E-39 305.3 13.8 174 539-716 6-278 (279)
35 cd05170 PIKKc_SMG1 Suppressor 100.0 2.5E-32 5.5E-37 294.9 13.7 177 535-716 3-306 (307)
36 KOG0890 Protein kinase of the 100.0 1.1E-30 2.5E-35 321.6 29.8 363 372-753 1875-2368(2382)
37 smart00146 PI3Kc Phosphoinosit 100.0 2.3E-32 4.9E-37 279.0 11.8 145 564-718 1-200 (202)
38 PTZ00303 phosphatidylinositol 100.0 2.7E-31 6E-36 296.8 14.3 227 519-764 934-1335(1374)
39 cd08398 C2_PI3K_class_I_alpha 100.0 1E-30 2.2E-35 256.0 16.0 117 12-148 4-124 (158)
40 PF00792 PI3K_C2: Phosphoinosi 100.0 8.6E-32 1.9E-36 260.0 5.6 132 53-195 2-142 (142)
41 cd08399 C2_PI3K_class_I_gamma 100.0 2.9E-29 6.2E-34 249.4 16.0 119 11-147 5-139 (178)
42 cd08693 C2_PI3K_class_I_beta_d 100.0 3.3E-29 7.2E-34 249.4 16.1 121 11-149 3-139 (173)
43 cd04012 C2A_PI3K_class_II C2 d 100.0 3.7E-29 8E-34 249.0 14.8 156 11-230 3-171 (171)
44 cd08380 C2_PI3K_like C2 domain 100.0 2.4E-28 5.2E-33 239.5 15.5 125 11-152 3-129 (156)
45 PF00454 PI3_PI4_kinase: Phosp 99.9 4.7E-28 1E-32 252.0 11.5 151 562-716 1-234 (235)
46 KOG0892 Protein kinase ATM/Tel 99.9 1E-25 2.2E-30 279.6 27.5 371 324-722 2240-2728(2806)
47 cd05163 TRRAP TRansformation/t 99.9 1.1E-26 2.4E-31 244.6 12.1 169 543-715 11-251 (253)
48 smart00142 PI3K_C2 Phosphoinos 99.8 3.8E-20 8.2E-25 168.6 8.0 88 20-116 1-95 (100)
49 KOG0891 DNA-dependent protein 99.6 8.7E-17 1.9E-21 205.2 1.5 190 524-718 1950-2238(2341)
50 cd08409 C2B_Synaptotagmin-15 C 97.2 0.0033 7.1E-08 60.5 10.6 76 52-129 34-109 (137)
51 cd08410 C2B_Synaptotagmin-17 C 97.0 0.0043 9.2E-08 59.5 10.1 79 52-132 34-112 (135)
52 cd08692 C2B_Tac2-N C2 domain s 97.0 0.0051 1.1E-07 59.3 10.0 74 53-129 35-109 (135)
53 cd08392 C2A_SLP-3 C2 domain fi 97.0 0.009 2E-07 56.9 11.5 76 52-129 36-111 (128)
54 cd08381 C2B_PI3K_class_II C2 d 97.0 0.0088 1.9E-07 56.4 11.3 104 6-129 4-108 (122)
55 smart00239 C2 Protein kinase C 96.9 0.0099 2.1E-07 51.6 10.1 74 52-131 20-93 (101)
56 cd08407 C2B_Synaptotagmin-13 C 96.9 0.0082 1.8E-07 58.1 10.4 74 53-128 38-111 (138)
57 cd08680 C2_Kibra C2 domain fou 96.9 0.014 3E-07 55.5 11.6 79 51-130 33-111 (124)
58 cd04029 C2A_SLP-4_5 C2 domain 96.8 0.013 2.8E-07 55.5 11.4 76 52-129 36-111 (125)
59 cd08393 C2A_SLP-1_2 C2 domain 96.8 0.012 2.7E-07 55.5 11.3 77 52-130 36-112 (125)
60 cd08405 C2B_Synaptotagmin-7 C2 96.8 0.013 2.9E-07 55.8 10.9 76 52-129 35-110 (136)
61 cd08402 C2B_Synaptotagmin-1 C2 96.7 0.022 4.9E-07 54.3 12.1 75 52-128 35-109 (136)
62 cd08685 C2_RGS-like C2 domain 96.6 0.02 4.3E-07 53.8 10.8 75 52-129 31-106 (119)
63 cd08388 C2A_Synaptotagmin-4-11 96.6 0.031 6.7E-07 53.1 12.0 118 5-145 6-124 (128)
64 cd08395 C2C_Munc13 C2 domain t 96.5 0.01 2.2E-07 56.2 8.2 91 52-147 19-110 (120)
65 cd08406 C2B_Synaptotagmin-12 C 96.5 0.025 5.4E-07 54.6 11.0 77 51-129 34-110 (136)
66 cd08408 C2B_Synaptotagmin-14_1 96.5 0.024 5.2E-07 54.8 10.9 76 52-129 35-111 (138)
67 cd00276 C2B_Synaptotagmin C2 d 96.5 0.024 5.2E-07 53.4 10.7 76 52-129 34-109 (134)
68 cd08677 C2A_Synaptotagmin-13 C 96.5 0.03 6.4E-07 52.9 10.9 74 52-128 31-104 (118)
69 cd08387 C2A_Synaptotagmin-8 C2 96.5 0.032 6.9E-07 52.3 11.2 74 52-129 36-109 (124)
70 cd08404 C2B_Synaptotagmin-4 C2 96.4 0.031 6.7E-07 53.4 11.1 76 52-129 35-110 (136)
71 cd08385 C2A_Synaptotagmin-1-5- 96.4 0.024 5.1E-07 53.1 9.9 74 52-129 36-109 (124)
72 cd08384 C2B_Rabphilin_Doc2 C2 96.4 0.024 5.3E-07 53.7 9.8 74 52-127 33-106 (133)
73 cd08696 C2_Dock-C C2 domains f 96.3 0.049 1.1E-06 55.1 12.3 66 80-147 64-135 (179)
74 cd04041 C2A_fungal C2 domain f 96.2 0.029 6.3E-07 51.7 9.3 75 52-129 22-96 (111)
75 cd08403 C2B_Synaptotagmin-3-5- 96.2 0.049 1.1E-06 51.9 11.1 75 52-128 34-108 (134)
76 cd04028 C2B_RIM1alpha C2 domai 96.2 0.016 3.5E-07 56.7 7.8 72 52-128 50-122 (146)
77 PF00168 C2: C2 domain; Inter 96.1 0.052 1.1E-06 46.1 9.9 67 52-124 19-85 (85)
78 cd08688 C2_KIAA0528-like C2 do 96.1 0.033 7.2E-07 51.2 9.2 71 52-129 20-91 (110)
79 cd08386 C2A_Synaptotagmin-7 C2 96.1 0.053 1.2E-06 50.7 10.7 74 52-129 36-110 (125)
80 cd08694 C2_Dock-A C2 domains f 96.1 0.025 5.5E-07 57.7 8.9 67 80-147 63-134 (196)
81 cd08390 C2A_Synaptotagmin-15-1 96.0 0.046 1E-06 50.9 9.8 74 52-129 35-108 (123)
82 cd04037 C2E_Ferlin C2 domain f 96.0 0.055 1.2E-06 51.0 10.2 71 52-129 20-90 (124)
83 cd04031 C2A_RIM1alpha C2 domai 96.0 0.049 1.1E-06 50.8 9.8 76 52-129 36-112 (125)
84 cd04009 C2B_Munc13-like C2 dom 96.0 0.092 2E-06 50.0 11.8 76 52-127 36-113 (133)
85 cd04030 C2C_KIAA1228 C2 domain 96.0 0.086 1.9E-06 49.3 11.3 76 52-129 36-113 (127)
86 cd08389 C2A_Synaptotagmin-14_1 95.9 0.073 1.6E-06 50.2 10.7 74 52-130 36-110 (124)
87 PF14429 DOCK-C2: C2 domain in 95.9 0.035 7.7E-07 56.1 8.8 64 81-146 70-137 (184)
88 cd08521 C2A_SLP C2 domain firs 95.8 0.066 1.4E-06 49.8 9.9 76 52-129 35-110 (123)
89 cd04032 C2_Perforin C2 domain 95.8 0.076 1.6E-06 50.7 10.4 69 52-128 47-115 (127)
90 cd08682 C2_Rab11-FIP_classI C2 95.8 0.063 1.4E-06 50.5 9.7 71 52-128 19-91 (126)
91 cd00275 C2_PLC_like C2 domain 95.7 0.18 3.8E-06 47.1 12.2 84 52-143 24-108 (128)
92 PLN02222 phosphoinositide phos 95.7 0.068 1.5E-06 63.0 11.1 85 51-144 477-562 (581)
93 cd04036 C2_cPLA2 C2 domain pre 95.6 0.08 1.7E-06 49.2 9.3 70 52-128 20-89 (119)
94 cd00030 C2 C2 domain. The C2 d 95.5 0.11 2.4E-06 44.4 9.5 72 52-131 19-90 (102)
95 cd08679 C2_DOCK180_related C2 95.5 0.083 1.8E-06 53.2 9.8 69 79-148 61-135 (178)
96 cd04044 C2A_Tricalbin-like C2 95.4 0.049 1.1E-06 50.6 7.1 69 53-129 24-92 (124)
97 cd04019 C2C_MCTP_PRT_plant C2 95.2 0.16 3.4E-06 49.9 10.3 70 51-129 19-89 (150)
98 cd08382 C2_Smurf-like C2 domai 95.2 0.16 3.5E-06 47.7 10.1 69 52-130 20-90 (123)
99 cd04045 C2C_Tricalbin-like C2 95.1 0.15 3.3E-06 47.9 9.6 69 52-129 21-89 (120)
100 cd04033 C2_NEDD4_NEDD4L C2 dom 95.1 0.17 3.8E-06 47.7 10.2 73 52-129 20-94 (133)
101 cd04035 C2A_Rabphilin_Doc2 C2 95.1 0.18 3.8E-06 47.2 10.1 73 52-127 35-108 (123)
102 cd04018 C2C_Ferlin C2 domain t 95.1 0.075 1.6E-06 52.3 7.8 70 52-129 34-103 (151)
103 cd04039 C2_PSD C2 domain prese 95.1 0.076 1.7E-06 49.0 7.4 69 53-129 26-94 (108)
104 cd04050 C2B_Synaptotagmin-like 95.1 0.14 3.1E-06 46.5 9.2 67 51-129 19-85 (105)
105 PLN02952 phosphoinositide phos 95.0 0.15 3.3E-06 60.3 11.4 85 51-144 495-580 (599)
106 cd04051 C2_SRC2_like C2 domain 95.0 0.14 3.1E-06 47.8 9.2 73 52-129 20-94 (125)
107 cd04042 C2A_MCTP_PRT C2 domain 95.0 0.18 3.8E-06 47.1 9.8 68 52-128 20-87 (121)
108 cd04022 C2A_MCTP_PRT_plant C2 95.0 0.13 2.7E-06 48.5 8.8 70 52-127 20-90 (127)
109 cd08375 C2_Intersectin C2 doma 94.9 0.21 4.5E-06 48.1 10.2 69 52-129 35-103 (136)
110 PLN02223 phosphoinositide phos 94.9 0.15 3.3E-06 59.3 10.7 85 51-144 433-518 (537)
111 PLN02230 phosphoinositide phos 94.8 0.15 3.2E-06 60.3 10.5 85 51-144 494-579 (598)
112 KOG0889 Histone acetyltransfer 94.8 0.038 8.1E-07 74.4 5.9 141 531-675 3192-3389(3550)
113 cd04020 C2B_SLP_1-2-3-4 C2 dom 94.7 0.22 4.8E-06 49.4 10.1 74 52-127 47-121 (162)
114 cd08376 C2B_MCTP_PRT C2 domain 94.7 0.28 6.1E-06 45.1 10.1 69 52-129 20-88 (116)
115 cd04026 C2_PKC_alpha_gamma C2 94.6 0.4 8.7E-06 45.2 11.1 73 52-127 33-105 (131)
116 cd04040 C2D_Tricalbin-like C2 94.5 0.32 6.9E-06 44.6 9.9 69 53-129 20-88 (115)
117 cd04025 C2B_RasA1_RasA4 C2 dom 94.5 0.27 5.9E-06 45.8 9.5 69 52-129 20-88 (123)
118 cd08373 C2A_Ferlin C2 domain f 94.4 0.31 6.8E-06 45.8 10.0 69 52-127 14-82 (127)
119 cd08379 C2D_MCTP_PRT_plant C2 94.4 0.35 7.6E-06 46.1 10.2 68 51-128 22-95 (126)
120 cd08697 C2_Dock-D C2 domains f 94.3 0.2 4.3E-06 51.0 8.8 66 79-145 65-139 (185)
121 cd08400 C2_Ras_p21A1 C2 domain 94.3 0.37 8E-06 45.5 10.1 70 52-130 21-90 (126)
122 PLN02228 Phosphoinositide phos 94.2 0.3 6.5E-06 57.6 11.1 85 51-144 456-542 (567)
123 cd04021 C2_E3_ubiquitin_ligase 94.2 0.2 4.3E-06 47.3 8.0 66 52-127 21-86 (125)
124 cd04014 C2_PKC_epsilon C2 doma 94.1 0.18 4E-06 47.7 7.7 68 52-129 34-101 (132)
125 cd04011 C2B_Ferlin C2 domain s 94.1 0.21 4.6E-06 45.8 7.9 72 52-129 20-92 (111)
126 cd08690 C2_Freud-1 C2 domain f 94.1 0.54 1.2E-05 46.6 11.1 77 51-129 23-106 (155)
127 cd04048 C2A_Copine C2 domain f 93.9 0.19 4E-06 46.9 7.1 75 52-129 20-99 (120)
128 cd04024 C2A_Synaptotagmin-like 93.8 0.45 9.8E-06 44.4 9.7 68 53-129 24-91 (128)
129 cd08678 C2_C21orf25-like C2 do 93.8 0.22 4.8E-06 46.8 7.6 70 52-129 17-86 (126)
130 cd04043 C2_Munc13_fungal C2 do 93.8 0.52 1.1E-05 44.0 10.0 70 52-127 21-90 (126)
131 cd08681 C2_fungal_Inn1p-like C 93.4 0.55 1.2E-05 43.3 9.4 68 52-129 21-89 (118)
132 cd04049 C2_putative_Elicitor-r 93.3 0.71 1.5E-05 43.1 10.1 72 52-129 21-93 (124)
133 cd04038 C2_ArfGAP C2 domain pr 93.2 0.3 6.5E-06 47.7 7.6 66 52-127 21-86 (145)
134 cd04010 C2B_RasA3 C2 domain se 93.2 0.3 6.4E-06 47.9 7.5 77 52-129 18-106 (148)
135 cd08378 C2B_MCTP_PRT_plant C2 93.2 0.66 1.4E-05 43.6 9.6 67 53-129 17-83 (121)
136 cd08695 C2_Dock-B C2 domains f 93.0 0.26 5.7E-06 50.2 6.9 67 80-147 63-132 (189)
137 cd04047 C2B_Copine C2 domain s 92.9 0.35 7.7E-06 44.1 7.2 74 52-129 20-97 (110)
138 cd08377 C2C_MCTP_PRT C2 domain 92.9 0.93 2E-05 41.7 10.1 68 52-129 21-88 (119)
139 cd08374 C2F_Ferlin C2 domain s 92.9 0.32 7E-06 46.9 7.1 77 51-128 23-119 (133)
140 cd04052 C2B_Tricalbin-like C2 92.7 0.41 8.8E-06 44.1 7.3 67 53-128 13-79 (111)
141 cd04016 C2_Tollip C2 domain pr 92.6 0.44 9.6E-06 45.1 7.5 80 52-145 21-101 (121)
142 cd08391 C2A_C2C_Synaptotagmin_ 92.6 0.45 9.7E-06 43.9 7.5 68 52-129 27-94 (121)
143 KOG0169 Phosphoinositide-speci 92.5 0.41 8.8E-06 57.3 8.6 106 18-144 618-725 (746)
144 cd08675 C2B_RasGAP C2 domain s 92.4 0.48 1E-05 45.6 7.6 75 52-128 18-104 (137)
145 cd08686 C2_ABR C2 domain in th 92.2 0.97 2.1E-05 42.8 9.2 69 53-127 15-90 (118)
146 cd08676 C2A_Munc13-like C2 dom 92.2 0.96 2.1E-05 44.6 9.6 50 73-129 92-141 (153)
147 cd04054 C2A_Rasal1_RasA4 C2 do 92.2 1.2 2.7E-05 41.5 10.0 68 52-128 20-87 (121)
148 cd04015 C2_plant_PLD C2 domain 92.1 0.57 1.2E-05 46.3 8.0 68 50-127 55-122 (158)
149 KOG1028 Ca2+-dependent phospho 92.0 0.6 1.3E-05 53.5 9.0 76 49-126 315-390 (421)
150 PF14186 Aida_C2: Cytoskeletal 91.6 0.9 1.9E-05 44.5 8.5 89 53-145 31-123 (147)
151 cd08691 C2_NEDL1-like C2 domai 91.2 0.88 1.9E-05 44.0 8.1 73 52-129 20-103 (137)
152 cd04046 C2_Calpain C2 domain p 90.6 2 4.4E-05 40.4 9.8 67 52-129 23-89 (126)
153 cd04017 C2D_Ferlin C2 domain f 90.4 1.4 3E-05 42.1 8.5 69 52-126 21-95 (135)
154 cd04027 C2B_Munc13 C2 domain s 88.9 3.1 6.7E-05 39.2 9.6 66 53-128 22-98 (127)
155 cd08401 C2A_RasA2_RasA3 C2 dom 88.5 1.7 3.7E-05 40.8 7.4 68 52-128 21-88 (121)
156 cd08383 C2A_RasGAP C2 domain ( 88.3 2.7 5.8E-05 38.5 8.5 71 52-129 17-87 (117)
157 cd04013 C2_SynGAP_like C2 doma 87.3 3.2 7E-05 40.7 8.7 67 54-129 28-98 (146)
158 PLN03008 Phospholipase D delta 84.6 2.4 5.3E-05 51.9 7.6 68 51-128 75-142 (868)
159 PF13575 DUF4135: Domain of un 83.5 3.2 7E-05 46.6 7.7 111 532-675 44-154 (370)
160 cd08394 C2A_Munc13 C2 domain f 81.0 5 0.00011 38.5 6.8 62 56-129 23-84 (127)
161 KOG1030 Predicted Ca2+-depende 79.4 4.3 9.4E-05 40.6 6.0 66 53-128 27-92 (168)
162 KOG1028 Ca2+-dependent phospho 78.0 13 0.00028 42.7 10.3 109 5-132 155-263 (421)
163 COG5038 Ca2+-dependent lipid-b 73.5 11 0.00023 47.7 8.3 87 18-127 438-524 (1227)
164 cd08684 C2A_Tac2-N C2 domain f 70.4 7.4 0.00016 35.2 4.4 72 51-128 19-90 (103)
165 KOG0696 Serine/threonine prote 62.2 17 0.00037 41.4 6.3 73 52-127 200-272 (683)
166 cd08689 C2_fungal_Pkc1p C2 dom 61.7 23 0.00051 33.0 6.1 71 51-135 21-91 (109)
167 PF10358 NT-C2: N-terminal C2 56.0 79 0.0017 30.0 9.2 93 17-132 8-106 (143)
168 PLN03200 cellulose synthase-in 55.1 21 0.00045 48.5 6.4 82 52-141 1998-2080(2102)
169 PF13646 HEAT_2: HEAT repeats; 50.5 39 0.00085 28.8 5.6 32 368-402 43-74 (88)
170 PF03130 HEAT_PBS: PBS lyase H 47.0 30 0.00066 23.8 3.4 26 372-400 1-26 (27)
171 PF07162 B9-C2: Ciliary basal 43.4 1.7E+02 0.0037 29.1 9.6 90 51-145 15-116 (168)
172 PF03701 UPF0181: Uncharacteri 30.4 79 0.0017 25.5 3.7 43 710-752 3-46 (51)
173 PF07035 Mic1: Colon cancer-as 29.1 1.2E+02 0.0025 30.7 5.7 78 355-432 60-147 (167)
174 PF10366 Vps39_1: Vacuolar sor 28.2 93 0.002 28.9 4.5 75 315-389 6-98 (108)
175 COG3140 Uncharacterized protei 27.5 79 0.0017 26.0 3.3 44 709-752 2-46 (60)
176 cd04792 LanM-like LanM-like pr 26.2 3.9E+02 0.0084 33.3 10.8 93 547-675 102-194 (825)
177 PRK05114 hypothetical protein; 25.6 1E+02 0.0022 25.6 3.6 44 710-753 3-47 (59)
178 KOG1242 Protein containing ada 25.1 5.9E+02 0.013 30.6 11.2 107 334-440 267-408 (569)
179 KOG1013 Synaptic vesicle prote 24.7 72 0.0016 35.4 3.5 77 50-128 251-327 (362)
180 PF12755 Vac14_Fab1_bd: Vacuol 24.4 86 0.0019 28.5 3.5 32 369-400 40-74 (97)
181 KOG1328 Synaptic vesicle prote 22.7 1.4E+02 0.003 36.6 5.4 93 74-175 181-324 (1103)
182 PLN02150 terpene synthase/cycl 22.3 76 0.0016 28.9 2.7 23 725-750 13-35 (96)
183 PF13646 HEAT_2: HEAT repeats; 21.6 1.2E+02 0.0027 25.6 3.8 30 368-400 12-41 (88)
184 cd08321 Pyrin_ASC-like Pyrin D 20.6 1.3E+02 0.0027 26.6 3.7 71 303-392 10-80 (82)
No 1
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-181 Score=1482.50 Aligned_cols=746 Identities=52% Similarity=0.854 Sum_probs=696.0
Q ss_pred CCCCceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCC
Q 004173 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (770)
Q Consensus 1 ~~~~~~~~~~s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~ 80 (770)
|+-+.|+||+||||+.||++||++|||..+ +.+|.++. .++++...+++||+||+|..|+|.+.|+.|+|++|.
T Consensus 1 M~~~~f~f~~Scdl~~~v~vKi~~leg~~~-~~~p~~~~-----~~l~~e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~ 74 (843)
T KOG0906|consen 1 MGAEKFSFCYSCDLDINVQVKIGSLEGKRP-LLNPMLKL-----IGLFQETSSDLYVTCQVFAEGKPFALPVRTSYKAFS 74 (843)
T ss_pred CCcceeEEEeeccCCcceEEEEEeeccccc-ccChHHHH-----HhhhcccchhhhheeeeeccCCcccCCccccccccC
Confidence 888999999999999999999999999999 67888887 888899999999999999999999999999999999
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCCCCC
Q 004173 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGK 160 (770)
Q Consensus 81 ~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~ 160 (770)
+.+.|||||+|||+|+||+++|+|++||||+++++...+||++++.||+++|.||+|.++|.+|+++++||+.+++.+
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~~~-- 152 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTSSS-- 152 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887622
Q ss_pred CCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCC--CceEEEEEeCCCCceeEeecCCCCCCC
Q 004173 161 VPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGN--SYLYLVVDFGRLEHRVVFQDSGANFLL 238 (770)
Q Consensus 161 ~~~~~~~~~~rle~l~~~~~~G~~~~~~wlD~l~~~~i~~~~~~~~~~~~~--~~~~L~iefp~f~~~vv~~~~~~~~~~ 238 (770)
..++||+||+|+++||++|++++++|||+++|++|+++++ ..+.+| +-.++.|+|-. .+||+|.+.. ..
T Consensus 153 ---~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~~--~~k~~Sm~~l~~v~id~~~-~~~v~~~~~~---~~ 223 (843)
T KOG0906|consen 153 ---TSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMINE--SWKHSSMLELPCVKIDFKE-YGPVYYEKSM---DV 223 (843)
T ss_pred ---chhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhhh--cccccceeEEeEEEeeccc-ceeeEEecCc---cc
Confidence 3789999999999999999999999999999999999973 334433 22355555544 6788888752 12
Q ss_pred CCCccCCCcceeecCCCCCCCCcchHHHHHHHhhhccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHH
Q 004173 239 PAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFS 318 (770)
Q Consensus 239 ~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~ 318 (770)
.+|+....++++++|||...+||+|.||++|+||+|+|++|||+|||.+.|++|+.|++|||+.+||-+||+++||||||
T Consensus 224 ~~p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~y 303 (843)
T KOG0906|consen 224 STPINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFRYY 303 (843)
T ss_pred ccccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhhHH
Confidence 44666677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHH
Q 004173 319 LMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQA 398 (770)
Q Consensus 319 l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQa 398 (770)
|+++++||+|||+||+|.+++|++||++||..|++|+++|||||||+.|.|+.||+|||++|++++|++|++||+|||||
T Consensus 304 L~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqa 383 (843)
T KOG0906|consen 304 LTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQA 383 (843)
T ss_pred HhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccC--------------CC-------------------------------chHHHHHHHHHhhhchhhHHHHHHHHHH
Q 004173 399 LRFER--------------SD-------------------------------KSRLSQFLVQRSSHNIELASFLRWYVSV 433 (770)
Q Consensus 399 LkyE~--------------~~-------------------------------~s~La~fLi~rA~~n~~i~~~l~W~L~~ 433 (770)
||||. .. .|+||+||++||+.|+++|++||||+++
T Consensus 384 l~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~ 463 (843)
T KOG0906|consen 384 LKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKV 463 (843)
T ss_pred HHHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEE
Confidence 99997 11 2479999999999999999999999999
Q ss_pred HccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhh
Q 004173 434 EFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLL 513 (770)
Q Consensus 434 e~~d~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~ 513 (770)
|++|..+.+||.+++..+++.+.+ . ..+..++..|.+|+.|++.|..|+++++..++++.+|+|+|+.+|.+..
T Consensus 464 e~Ed~~~~kry~si~~~f~~~l~K----~--~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~ 537 (843)
T KOG0906|consen 464 EIEDTPYSKRYLSIMSSFLEALSK----R--PDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHK 537 (843)
T ss_pred EecCChHHHHHHHHHHHHHHHhcc----C--cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccc
Confidence 999999888887666666665553 1 1234688999999999999999999999999999999999999998754
Q ss_pred -hhcccCCCCcccCCCCcEEEEEEecCcceecccCcceeEEEEEeCCCC-eEEEEEeeCcchhHHHHHHHHHHHHHHHHH
Q 004173 514 -SELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGG-TCKMIFKKGDDIRQDQLVVQMVSLMDRLLK 591 (770)
Q Consensus 514 -~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~-~~~~IfK~GDDLRQD~lvlQli~lmd~i~~ 591 (770)
..+..+ .++++|++|++.|+||+|+++++|+|++.|++|+|++.+|. .|++|||+||||||||+|+|||++||+|++
T Consensus 538 ~~~l~~~-~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLk 616 (843)
T KOG0906|consen 538 HMNLLDV-RLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLK 616 (843)
T ss_pred ccccccc-eeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhc
Confidence 223444 58999999999999999999999999999999999999987 999999999999999999999999999999
Q ss_pred hcCCCceeeeeEEEEecCCCCccceeccccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhhee
Q 004173 592 LENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 671 (770)
Q Consensus 592 ~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiL 671 (770)
++|+|++++||+|+|||+..|++|||++.+++.|+.++++|..|+++..|++.+++|+++++++||++||||||||||||
T Consensus 617 kenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYIL 696 (843)
T KOG0906|consen 617 KENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYIL 696 (843)
T ss_pred cccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC------------------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHH
Q 004173 672 GIGD------------------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNL 703 (770)
Q Consensus 672 GIGD------------------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L 703 (770)
|||| |+.|++|+.+|+.||++||+|+++|+||
T Consensus 697 GvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnL 776 (843)
T KOG0906|consen 697 GVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNL 776 (843)
T ss_pred cccCCCcCceEEccCCcEEEEeeeeeccCCCCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999 6689999999999999999999999999
Q ss_pred HHHhccCCCCCCCCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhhcC
Q 004173 704 FHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQYWR 770 (770)
Q Consensus 704 ~~lm~~s~ip~~~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~~r 770 (770)
|++|++++||||+.+|+++|.++++||+|+||||+|.+||+++|++|++|++|.+.|.||+||||||
T Consensus 777 f~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aqy~R 843 (843)
T KOG0906|consen 777 FSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQYWR 843 (843)
T ss_pred HHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-132 Score=1123.51 Aligned_cols=644 Identities=30% Similarity=0.517 Sum_probs=549.5
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEe
Q 004173 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (770)
Q Consensus 12 ~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (770)
=|++.|++|||.+..+- ..+......++|+++||||+++||..++|+.+++.+...||+|+.|
T Consensus 339 Wd~~~~frI~l~~is~~-----------------n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leF 401 (1076)
T KOG0904|consen 339 WDLDRPFRIKLVGISKV-----------------NLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEF 401 (1076)
T ss_pred HcCCCceEEEEeecccc-----------------CCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEe
Confidence 37788888888876653 2223334788999999999999999999999999999999999999
Q ss_pred cccccCcCccCceEEEEEeecC----------------CCCceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCC
Q 004173 92 STKYRDLTAHSQLALTVWDVSC----------------GKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPT 155 (770)
Q Consensus 92 pi~~~dLP~~a~L~~ti~~~~~----------------~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~ 155 (770)
+|+++||||+|+|||.||.+.. ++++.|+||+|+.|||++++||+|.+.|++||... ++.
T Consensus 402 DI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p-~~~--- 477 (1076)
T KOG0904|consen 402 DIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVP-DEL--- 477 (1076)
T ss_pred eeecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCCC-chh---
Confidence 9999999999999999999841 23456999999999999999999999999998632 211
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCC-ceeEeecCCC
Q 004173 156 STPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLE-HRVVFQDSGA 234 (770)
Q Consensus 156 ~~p~~~~~~~~~~~~rle~l~~~~~~G~~~~~~wlD~l~~~~i~~~~~~~~~~~~~~~~~L~iefp~f~-~~vv~~~~~~ 234 (770)
+.+++ +.|.+.. +++..+++.+.|.||... +||.|+..+
T Consensus 478 -----------------~e~l~--p~Gt~~~--------------------Np~ke~~~~~~i~f~~~~~~~~~yp~~~- 517 (1076)
T KOG0904|consen 478 -----------------GELLN--PKGTVRT--------------------NPNKENAASLSIKFPEYCPHPVYYPKLE- 517 (1076)
T ss_pred -----------------hhhcC--CCCcccC--------------------CCCcccchheeeeccccCCCCccCCchh-
Confidence 11222 2344333 233445688999999985 888887542
Q ss_pred CCCCCCCccCCCcceeecCCCCCCCCcchHHHHHHHhhhccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Q 004173 235 NFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWK 314 (770)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~ 314 (770)
++.++...+ ++ ....|++..-..+.+.+|++|+..+|+.+|+++||++||.
T Consensus 518 ---------------k~~~~~~~~-----------~~---~~~~~~~~~~~e~~~kqLk~i~~~d~l~el~e~ekd~lW~ 568 (1076)
T KOG0904|consen 518 ---------------KILEPAADR-----------ER---VNRLDRESCGREKLRKQLKEILARDPLSELTEQEKDLLWH 568 (1076)
T ss_pred ---------------hccchhhhh-----------hh---hccchhhhcccchhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 111111110 01 1112233322346789999999999999999999999999
Q ss_pred hHHHhhhc-hhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHH
Q 004173 315 FRFSLMSE-KRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLL 393 (770)
Q Consensus 315 ~R~~l~~~-~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLl 393 (770)
+|+++.++ |++||++|.||.|+.+++|+|.+.||..|++++|+.||||||.+|+|+.||+|||+||++++||+|+.||+
T Consensus 569 ~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLL 648 (1076)
T KOG0904|consen 569 LRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLL 648 (1076)
T ss_pred HHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHH
Confidence 99999765 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHH
Q 004173 394 QLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQS 473 (770)
Q Consensus 394 QLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 473 (770)
|||||||||+|++|.|++||++||++|.+|||+|||+|++|++.+..+.|| +.+++++++ | +. .+.+.
T Consensus 649 qLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~Rf----gllLEaYlR---G-c~----~hlk~ 716 (1076)
T KOG0904|consen 649 QLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQRF----GLLLEAYLR---G-CT----HHLKV 716 (1076)
T ss_pred HHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHHHH----HHHHHHHHh---c-cH----HHHHH
Confidence 999999999999999999999999999999999999999999999877776 667888874 3 22 67789
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 474 LVRQTELTAQLCSIMRDVGN--VRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 474 l~~Q~~~~~~L~~i~~~vk~--~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
|.+|++.+++|.+++..||. .+.++++-.+.|+..+++.. ....+ +.+..|+||+..+.++.+++|+||+||++|+
T Consensus 717 l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~-~~~~l-q~l~sPLdP~~~lgel~iekckvM~SkkrPL 794 (1076)
T KOG0904|consen 717 LTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLA-NSEAL-QNLQSPLDPSLKLGELIIEKCKVMDSKKRPL 794 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHH-HHHHH-HhccCCCChhhhhcchhhhhhhhhhccCCce
Confidence 99999999999999999983 23334444567777775431 11112 4789999999999999999999999999999
Q ss_pred EEEEEeCC---CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHh
Q 004173 552 RLTFRTAS---GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILS 627 (770)
Q Consensus 552 ~l~f~~~d---g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~ 627 (770)
|+.|.+.+ +....+|||+|||||||||++||+++||.||+.+|+|++|.||+|||||...||||+|+ |.|+++|+.
T Consensus 795 wl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~ 874 (1076)
T KOG0904|consen 795 WLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQL 874 (1076)
T ss_pred EEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhhhhhh
Confidence 99998765 22689999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred ccC-----------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC---------------------
Q 004173 628 EHR-----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD--------------------- 675 (770)
Q Consensus 628 ~~~-----------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD--------------------- 675 (770)
+.| .+.+|++.+||.+. .+ .+|++.|+.||||||||||||||||
T Consensus 875 ~~g~~~at~afn~~~L~~WLKekNp~e~-kl---d~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~GqlFHIDFGH 950 (1076)
T KOG0904|consen 875 NTGNMAATAAFNKDALLNWLKEKNPGED-KL---DAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKETGQLFHIDFGH 950 (1076)
T ss_pred ccccceeeccCCHHHHHHHHhhcCchHH-HH---HHHHHHHHHhhccceeeeeeecccccccCceEEeccCcEEEEEhhh
Confidence 743 58999999999864 23 5899999999999999999999999
Q ss_pred -----------------------------------chh-hhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCc
Q 004173 676 -----------------------------------SQY-YTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDP 719 (770)
Q Consensus 676 -----------------------------------s~~-~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~ 719 (770)
++. |++|+++|++||.+||+|+++|++||+||+.+|+|++++..
T Consensus 951 iLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss~~ 1030 (1076)
T KOG0904|consen 951 ILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSSKK 1030 (1076)
T ss_pred hhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccccHH
Confidence 334 99999999999999999999999999999999999999875
Q ss_pred hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHH
Q 004173 720 EKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRW 765 (770)
Q Consensus 720 d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~-s~~t~~~d~~H~~ 765 (770)
.|.|+++.|.++.|||||.+||...+++|++ +|.|+++..+|++
T Consensus 1031 --Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~~H~v 1075 (1076)
T KOG0904|consen 1031 --DIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWLFHNV 1075 (1076)
T ss_pred --HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhhhhhc
Confidence 5789999999999999999999999999995 7889999999975
No 3
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-120 Score=1039.88 Aligned_cols=613 Identities=31% Similarity=0.486 Sum_probs=539.8
Q ss_pred CCCCceEEEEEEEeCCcccccceeecccc----CCCCccccccEEecccccCcCccCceEEEEEeecCCC----------
Q 004173 50 ERRPELYVECALYIDGAPFGLPMRTRLES----MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK---------- 115 (770)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~----~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~---------- 115 (770)
+..+|+|..|+|+|||+.|+.|++|.... |.....|++||+||+.+|+|||+|+|++|+|++..+.
T Consensus 653 s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~e 732 (1639)
T KOG0905|consen 653 SQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKE 732 (1639)
T ss_pred hhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhccc
Confidence 45689999999999999999999986544 3445789999999999999999999999999985321
Q ss_pred --CceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhh
Q 004173 116 --DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRL 193 (770)
Q Consensus 116 --~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~G~~~~~~wlD~l 193 (770)
....+||+++||||++..+++|+.-|.+||........+..+++ +
T Consensus 733 rr~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~~~~l~~~~~~~----------------------~----------- 779 (1639)
T KOG0905|consen 733 RRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKKQNMLKPFGAYP----------------------Y----------- 779 (1639)
T ss_pred ccchhhhheeeccccchhhhhcccchhhccccCCCCcCCCCCCCCC----------------------c-----------
Confidence 12479999999999999999999999999976644332221111 0
Q ss_pred hHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEeecCCCCCCCCCCccCCCcceeecCCCCCCCCcchHHHHHHHhhh
Q 004173 194 TFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSL 273 (770)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~L~iefp~f~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~ 273 (770)
...+.+.|.|+||...+.|.|+++..+- +.+.-||-+
T Consensus 780 ---------------~qp~~~iLqidfp~~~~ei~fp~~~~d~----------~~~p~~df~------------------ 816 (1639)
T KOG0905|consen 780 ---------------HQPDDPILQIDFPIWGFEIYFPNPQEDR----------QCIPHYDFA------------------ 816 (1639)
T ss_pred ---------------cCCCCceEEEecCCCCceEecCCccccc----------ccccccchh------------------
Confidence 0123589999999999999999864221 111112211
Q ss_pred ccCCcccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccc-cCCCHHHHHHHHHHhcccC
Q 004173 274 TRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWE 352 (770)
Q Consensus 274 ~~~~~d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv-~W~~~~e~~~a~~LL~~W~ 352 (770)
.+..+.+.+|..|+....+..|++++|+++|.+|+||.++|.|||++|.|. +|+... +.+.|.||++|+
T Consensus 817 ---------tl~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~-l~~~y~lL~~Wa 886 (1639)
T KOG0905|consen 817 ---------TLDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGN-LMDVYQLLHQWA 886 (1639)
T ss_pred ---------hhhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhh-HHHHHHHHHhcc
Confidence 123577888999999999999999999999999999999999999999886 677655 566799999999
Q ss_pred CCCHhhhhhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHH
Q 004173 353 MIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVS 432 (770)
Q Consensus 353 ~i~~~dALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~ 432 (770)
++.|.+|||||.++|+|++||+.||++|.++++|||..||||||||||||.|.+|+|++|||+||+.|.++||++||.|+
T Consensus 887 ~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk 966 (1639)
T KOG0905|consen 887 PLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLK 966 (1639)
T ss_pred ccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhh
Q 004173 433 VEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGL 512 (770)
Q Consensus 433 ~e~~d~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~ 512 (770)
-.++|..+..| |+.++.+++.. +|..+++++.+|.++++.|..|++.||+.+++. +.+.|+..|..+
T Consensus 967 ~~l~d~qfs~r----Yq~ll~aLl~~-------~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~--Rq~vL~~~l~~v 1033 (1639)
T KOG0905|consen 967 DALDDSQFSLR----YQNLLAALLDC-------CGKNLREEFKKQHKLVNELGSIAEDVRSASGSA--RQHVLRTGLGRV 1033 (1639)
T ss_pred hccccceeehH----HHHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHhHHHH
Confidence 99999876544 67788888742 235789999999999999999999999988764 556788888766
Q ss_pred hhhcccCCCCcccCCCCcEEEEEEecCcceecccCcceeEEEEEeC--CCCeEEEEEeeCcchhHHHHHHHHHHHHHHHH
Q 004173 513 LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLL 590 (770)
Q Consensus 513 ~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~~l~f~~~--dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~ 590 (770)
.+.+..- +.++||+.|+..++||.+++|++|+|+..|++|+|.+. +|+.+++|||.|||||||||+||||++||+||
T Consensus 1034 ~~ff~~n-~tcrLPL~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIW 1112 (1639)
T KOG0905|consen 1034 DSFFLQN-NTCRLPLCPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIW 1112 (1639)
T ss_pred HHHHHhC-CceecccCchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHH
Confidence 5555432 36899999999999999999999999999999999994 58999999999999999999999999999999
Q ss_pred HhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhccC--------cHHHHHHhhCCCCCCCCcccHHHHhhhhccc
Q 004173 591 KLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSC 661 (770)
Q Consensus 591 ~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~ 661 (770)
.++|||++|.+|+|+|||.+.||||.|+ +.||++|+.++| .|.+||.++||++.+ | .+|.+||++||
T Consensus 1113 l~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp~e~e-Y---ekA~eNFiySC 1188 (1639)
T KOG0905|consen 1113 LQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNPSEFE-Y---EKAVENFIYSC 1188 (1639)
T ss_pred HhcCCceeEEEEEeecccccccceeecccHHHHHHHHHHhccccccccchHHHHHHhcCCCHHH-H---HHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999864 699999999999864 4 68999999999
Q ss_pred hhhhhhhheecccC-------------------------------------------------------chhhhhhHHHH
Q 004173 662 AGYSVITYILGIGD-------------------------------------------------------SQYYTRFKSYC 686 (770)
Q Consensus 662 AgysV~tYiLGIGD-------------------------------------------------------s~~~~~F~~~c 686 (770)
|||||||||||||| +..|+.|+++|
T Consensus 1189 AG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1189 AGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred ccceeeeEeeecccccCCceEEeccCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999 45799999999
Q ss_pred HHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 004173 687 CEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWA 766 (770)
Q Consensus 687 ~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~a 766 (770)
|+||+++|||+++++||+.+|+.+|||++++.. +++||++.|+++.||.||+.+|.++|++|+++++|++++++|++|
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~i~--dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLA 1346 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQ--DLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLA 1346 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccchh--hHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999854 578999999999999999999999999999999999999999999
Q ss_pred hh
Q 004173 767 QY 768 (770)
Q Consensus 767 q~ 768 (770)
|+
T Consensus 1347 Qm 1348 (1639)
T KOG0905|consen 1347 QM 1348 (1639)
T ss_pred HH
Confidence 97
No 4
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1.5e-73 Score=616.40 Aligned_cols=287 Identities=33% Similarity=0.606 Sum_probs=268.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
+++.+|++++++|.+++++||..+. .+|.+.|++.|++.. .+..++++++||+||++.|++|.+++|+||+|+++|+
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~-~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~Pl 78 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK-QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNAVPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh-hhccCCCCCcCCCCCCeEEEEEEcCceEEecccCCCe
Confidence 5799999999999999999998764 467789999998865 4445677899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhc
Q 004173 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (770)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (770)
+|+|++.| |..|.+|||.||||||||+++|+|++||+||+++|+|++|+||+|+|||+++||||||+ +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~ 158 (354)
T cd00895 79 KLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHH
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999 8999999986
Q ss_pred cC--------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------------
Q 004173 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------- 675 (770)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------- 675 (770)
+| +|.+||++++|++.++ .+|++||++|||||||+||||||||
T Consensus 159 ~g~~g~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg~ 234 (354)
T cd00895 159 HGVTGSFKDRPLADWLQKHNPTEDEY----EKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLGH 234 (354)
T ss_pred hCcCcccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcCC
Confidence 54 6999999999876543 6899999999999999999999999
Q ss_pred ------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHH
Q 004173 676 ------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 725 (770)
Q Consensus 676 ------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~ 725 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++||||++..+ ++.+
T Consensus 235 ~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~--~i~~ 312 (354)
T cd00895 235 AQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLE--DLKY 312 (354)
T ss_pred CcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcch--HHHH
Confidence 45689999999999999999999999999999999999999754 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHh
Q 004173 726 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 767 (770)
Q Consensus 726 l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq 767 (770)
+++||++++||+||.+||+++|++|+++|+|+++|++|++||
T Consensus 313 l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 313 VYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 5
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1.1e-71 Score=606.64 Aligned_cols=298 Identities=62% Similarity=1.022 Sum_probs=285.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
+.|.+|.+|+++|.+|++.+|..++++++|.+.|++.|++....+..++++++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~P~ 81 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALMPL 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccccCce
Confidence 46999999999999999999998888889999999999886554445667999999999999999999999999999999
Q ss_pred EEEEEeCCC---CeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceeccccHHHHHhc
Q 004173 552 RLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSE 628 (770)
Q Consensus 552 ~l~f~~~dg---~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~~~ 628 (770)
+++|.++|| +.|.+|||+||||||||+++|+|++||+||+++++|++|+||+|+|||+++|+||||++.|+++|+++
T Consensus 82 ~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~~~ 161 (350)
T cd00896 82 KLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASILKK 161 (350)
T ss_pred EEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHHHH
Confidence 999999999 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC---------------------------------
Q 004173 629 HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD--------------------------------- 675 (770)
Q Consensus 629 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD--------------------------------- 675 (770)
+++|.+||+++++++..++|+..+|++||++|||||||+||||||||
T Consensus 162 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~~~~P 241 (350)
T cd00896 162 YGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPP 241 (350)
T ss_pred HHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCCCCCC
Confidence 99999999999999888877778999999999999999999999999
Q ss_pred ---------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHHHHHHcCCCCCHHHHH
Q 004173 676 ---------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACV 740 (770)
Q Consensus 676 ---------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~l~~rl~l~lse~eA~ 740 (770)
|+.|+.|+.+|+.||++||+|+++|++++++|+++|+||++.+++.++.++++||++++||+||.
T Consensus 242 FrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~ 321 (350)
T cd00896 242 MKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAI 321 (350)
T ss_pred eeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHH
Confidence 56789999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHhhc
Q 004173 741 HFFQDLINESVSALFPQMVETIHRWAQYW 769 (770)
Q Consensus 741 ~~f~~lI~~S~~s~~t~~~d~~H~~aq~~ 769 (770)
+||+++|++|+++++|++||++|+|||||
T Consensus 322 ~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 322 KHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-70 Score=593.43 Aligned_cols=287 Identities=32% Similarity=0.563 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCcce
Q 004173 471 WQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (770)
Q Consensus 471 ~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P 550 (770)
|++|.+|.++++.|.+++++||..++++. .+.|++.++...+.+. +++++||+||++.+.++.+++|+||+|+++|
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~~--~~~l~~~~~~l~~~~~--~~~~~lPl~p~~~~~~~~~~~c~v~~S~~~P 76 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSSTR--QVVLQEGMERVQSFFQ--KNKCRLPLSPSLVAKELNIKVCSFFSSNAVP 76 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHhhcC--CCCCCCCCCcceeEccEehheeEEecccCCc
Confidence 35799999999999999999998765543 3557766655433332 3579999999999999999999999999999
Q ss_pred eEEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHh
Q 004173 551 LRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILS 627 (770)
Q Consensus 551 ~~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~ 627 (770)
++|+|++.| |+.|.+|||.||||||||+++|+|++||+||+++|+|++|+||+|+|||.++||||||+ |.|+++|++
T Consensus 77 l~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~ 156 (353)
T cd05176 77 LKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQV 156 (353)
T ss_pred eEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHH
Confidence 999999998 89999999999999999999999999999999999999999999999999999999999 999999998
Q ss_pred ccC--------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------------
Q 004173 628 EHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------ 675 (770)
Q Consensus 628 ~~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------ 675 (770)
++| +|.+|++++++++.+| .+|++||++|||||||+||||||||
T Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg 232 (353)
T cd05176 157 EYGVTGSFKDKPLAEWLRKYNPAEEEY----EKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLG 232 (353)
T ss_pred HhCcCCccccchHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcC
Confidence 753 6899999999876543 5899999999999999999999999
Q ss_pred -------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHH
Q 004173 676 -------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGIL 724 (770)
Q Consensus 676 -------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~ 724 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++||||++.++ ++.
T Consensus 233 ~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~--~i~ 310 (353)
T cd05176 233 HAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQ--DLK 310 (353)
T ss_pred CCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCch--HHH
Confidence 23689999999999999999999999999999999999999765 588
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHh
Q 004173 725 KLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 767 (770)
Q Consensus 725 ~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq 767 (770)
++++||++++||+||..||+++|++|+++|+|+++|++|++||
T Consensus 311 ~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 311 YVYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.3e-70 Score=594.03 Aligned_cols=287 Identities=31% Similarity=0.535 Sum_probs=264.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
++|.+|++++++|.+++++||..++++. .+.|++.|++....+. .+.+++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~~--~~~l~~~l~~~~~~~~-~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~Pl 78 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTRR--KEVLKREASRLEDFFQ-DVVSCCLPLNPALRVKGIDADACSYFTSNAAPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhHH--HHHHHHHHHHhhhhcc-CCCCCccCCCCCeEEEEEecCccEEehhhcCCC
Confidence 4799999999999999999998866543 3458888887433222 245899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhc
Q 004173 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (770)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (770)
+|+|++.| |+.|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ |.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~ 158 (354)
T cd05177 79 KISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHh
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred c--------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------------
Q 004173 629 H--------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------- 675 (770)
Q Consensus 629 ~--------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------- 675 (770)
. ++|.+||+.+++++..| .+|++||++|||||||+||||||||
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg~ 234 (354)
T cd05177 159 SGLIGPLKENTIEKWFHMHNKLKEDY----DKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLGH 234 (354)
T ss_pred hCCCcccchhhHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcCC
Confidence 4 36899999999876544 5899999999999999999999999
Q ss_pred ------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHH
Q 004173 676 ------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 725 (770)
Q Consensus 676 ------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~ 725 (770)
|+.|+.|+++|++||++||+|+++|+++|++|+++||||++..+ ++.+
T Consensus 235 ~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~--~i~~ 312 (354)
T cd05177 235 AQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQ--DLKY 312 (354)
T ss_pred CccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcch--HHHH
Confidence 45688999999999999999999999999999999999999765 4899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHh
Q 004173 726 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 767 (770)
Q Consensus 726 l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq 767 (770)
+++||+|++||+||.+||+++|++|+++++|+++|++|++||
T Consensus 313 l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 313 VYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 8
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=7.9e-69 Score=580.37 Aligned_cols=286 Identities=30% Similarity=0.531 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CChhHH-HHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCcce
Q 004173 473 SLVRQTELTAQLCSIMRDVGNVR-GNTQKK-IEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (770)
Q Consensus 473 ~l~~Q~~~~~~L~~i~~~vk~~~-~~~~~k-~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P 550 (770)
.|.+|++++++|.+++++||..+ +..+++ .+.|++.|++. ++....+++++|+||++.+.+|.+++|+||+|+++|
T Consensus 3 ~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~--~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~~P 80 (366)
T cd05175 3 HLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRP--DFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAKRP 80 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCc--hhhhccCCCCCCCCCceEEEEEEeccceeechhcCC
Confidence 68999999999999999999876 444344 67788888653 222223589999999999999999999999999999
Q ss_pred eEEEEEeCCC------CeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHH
Q 004173 551 LRLTFRTASG------GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLA 623 (770)
Q Consensus 551 ~~l~f~~~dg------~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~ 623 (770)
+||+|++.|+ ..|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ |.|++
T Consensus 81 l~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~ 160 (366)
T cd05175 81 LWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTIM 160 (366)
T ss_pred eEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhHH
Confidence 9999999987 4689999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhcc----------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------
Q 004173 624 QILSEH----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------ 675 (770)
Q Consensus 624 ~I~~~~----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------ 675 (770)
+|+++. .+|.+||+++++++ .+ .+|++||++|||||||+||||||||
T Consensus 161 ~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HID 235 (366)
T cd05175 161 QIQCKGGLKGALQFNSHTLHQWLKDKNKGE--MY---DAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHID 235 (366)
T ss_pred HHHhccccccccccCchhHHHHHhhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEEe
Confidence 998753 35899999988653 23 6899999999999999999999999
Q ss_pred ----------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCC
Q 004173 676 ----------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDI 715 (770)
Q Consensus 676 ----------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~ 715 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++||||+
T Consensus 236 FG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l 315 (366)
T cd05175 236 FGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPEL 315 (366)
T ss_pred hHHhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 2468999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHh
Q 004173 716 ASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 767 (770)
Q Consensus 716 ~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~-s~~t~~~d~~H~~aq 767 (770)
+..+ ++.+|++||+|++||+||.+||.++|++|++ +|+|++++++|++||
T Consensus 316 ~~~~--~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~~ 366 (366)
T cd05175 316 QSFD--DIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIKQ 366 (366)
T ss_pred CCcc--HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhcC
Confidence 9876 4789999999999999999999999999997 688999999999998
No 9
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=9.4e-69 Score=583.65 Aligned_cols=288 Identities=31% Similarity=0.555 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCc
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVR---GNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~---~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~ 548 (770)
+.|.+|++++++|.+++++||..+ +++++|.+.|++.|++... ..+++++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~ 79 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLAN--LDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK 79 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccch--hcccccCCCCCCCceeEeeeecCceEEehhhc
Confidence 368999999999999999999875 5678889999999977432 23457899999999999999999999999999
Q ss_pred ceeEEEEEeCC-----CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccH
Q 004173 549 HPLRLTFRTAS-----GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (770)
Q Consensus 549 ~P~~l~f~~~d-----g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl 622 (770)
+|++|+|++.| |+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ +.|+
T Consensus 80 ~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl 159 (366)
T cd05165 80 KPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTI 159 (366)
T ss_pred CCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhH
Confidence 99999999987 58999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhccC----------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-----------------
Q 004173 623 AQILSEHR----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD----------------- 675 (770)
Q Consensus 623 ~~I~~~~~----------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD----------------- 675 (770)
++|+++++ .|.+||+++++++.. | .+|++||++|||||||+||||||||
T Consensus 160 ~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~-~---~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~HI 235 (366)
T cd05165 160 ANIQQETGGNATAAFKKEALLHWLKEKNPTEEK-L---DAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFHI 235 (366)
T ss_pred HHHHHhcccccccccCcHHHHHHHHhhCCCHHH-H---HHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEEE
Confidence 99998753 489999999886543 3 5899999999999999999999999
Q ss_pred ----------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCC
Q 004173 676 ----------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDI 715 (770)
Q Consensus 676 ----------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~ 715 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++||||+
T Consensus 236 DFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~ 315 (366)
T cd05165 236 DFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPEL 315 (366)
T ss_pred ehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCccc
Confidence 3468999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHh
Q 004173 716 ASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 767 (770)
Q Consensus 716 ~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~-s~~t~~~d~~H~~aq 767 (770)
+.++ +|.++++||+|++||+||.+||+++|++|++ +|.|++++++|++|+
T Consensus 316 ~~~~--~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~~~~ 366 (366)
T cd05165 316 TSKE--DIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHLVLK 366 (366)
T ss_pred Cchh--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHHhcC
Confidence 9754 6899999999999999999999999999997 788999999999985
No 10
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3.8e-68 Score=576.51 Aligned_cols=285 Identities=33% Similarity=0.623 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC--CCChhHHHHHHHHHHHhh--hhhcccCCCCcccCCCCcEEEEEEecCcceecccC
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~--~~~~~~k~e~L~~~L~~~--~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~ 547 (770)
+.|.+|.+++++|..|++.||.. +++++++.|.|++.|++. ...+ .++++|+||++.+.++.+++|+||+|+
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~lPl~p~~~~~~~~~~~~~v~~Sk 77 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEAL----SHLQSPLSPSIILCEVCVDQCTFMDSK 77 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhh----ccCCCCCCCceEEEEEEcCcEEEEecc
Confidence 36999999999999999999987 467788899999999774 3332 368999999999999999999999999
Q ss_pred cceeEEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHH
Q 004173 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (770)
Q Consensus 548 ~~P~~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~ 624 (770)
++|++|+|++.| |+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++||||||+ |.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~ 157 (361)
T cd05174 78 MKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIAN 157 (361)
T ss_pred CCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHH
Confidence 999999999976 89999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhcc-----------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------
Q 004173 625 ILSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------ 675 (770)
Q Consensus 625 I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------ 675 (770)
|+++. ..+.+||++++|++ ++ .+|++||++|||||||+||||||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HID 232 (361)
T cd05174 158 IQLNKSNMAATAAFNKDALLNWLKSKNPGD--AL---DQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHID 232 (361)
T ss_pred HHHhhcccchhccccchHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEe
Confidence 98652 26899999998763 44 6899999999999999999999999
Q ss_pred --------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCC
Q 004173 676 --------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 717 (770)
Q Consensus 676 --------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~ 717 (770)
|+.|+.|+.+|++||++||+|+++|++||++|+++||||++.
T Consensus 233 FG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~ 312 (361)
T cd05174 233 FGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC 312 (361)
T ss_pred hHHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc
Confidence 346889999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh-hChhhHHHHHHHHHHh
Q 004173 718 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESV-SALFPQMVETIHRWAQ 767 (770)
Q Consensus 718 ~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~-~s~~t~~~d~~H~~aq 767 (770)
. .++.+|++||+|++||+||.+||+++|++|+ ++|+|++++++|++|+
T Consensus 313 ~--~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a~ 361 (361)
T cd05174 313 S--KDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVSK 361 (361)
T ss_pred h--hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhcC
Confidence 4 4689999999999999999999999999999 6899999999999985
No 11
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=1.1e-67 Score=574.51 Aligned_cols=286 Identities=31% Similarity=0.574 Sum_probs=262.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--ChhHHHHHHHHHHHhh-hhhcccCCCCcccCCCCcEEEEEEecCcceecccCc
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRG--NTQKKIEKLRQLLSGL-LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~--~~~~k~e~L~~~L~~~-~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~ 548 (770)
+.|.+|++++++|..++++||..++ ++++|+|.|++.|++. ..+.. +++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~lPldP~~~v~~i~~~~~~v~~S~~ 78 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREAL---SDLQSPLNPSIILSELNVEKCKYMDSKM 78 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcc---cCCCCCCCCceEEEEEEcCceEEecccC
Confidence 3689999999999999999998654 6778899999999875 33332 4899999999999999999999999999
Q ss_pred ceeEEEEEeC--CCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHH
Q 004173 549 HPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 625 (770)
Q Consensus 549 ~P~~l~f~~~--dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I 625 (770)
+|++|+|.+. +|+.|.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++|+||||+ |.|+++|
T Consensus 79 ~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I 158 (362)
T cd05173 79 KPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADI 158 (362)
T ss_pred CCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHH
Confidence 9999999875 688999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred Hhcc-----------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------
Q 004173 626 LSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------- 675 (770)
Q Consensus 626 ~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------- 675 (770)
+.+. .+|.+||+++++++ ++ .+|++||++||||||||||||||||
T Consensus 159 ~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~~---~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDF 233 (362)
T cd05173 159 QLNSSNVAAAAAFNKDALLNWLKEYNSGD--DL---ERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDF 233 (362)
T ss_pred HHhccccchhcccChhHHHHHHHhcCCcH--HH---HHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeh
Confidence 8642 35899999887653 33 5899999999999999999999999
Q ss_pred -------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCC
Q 004173 676 -------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 718 (770)
Q Consensus 676 -------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~ 718 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++|+||++..
T Consensus 234 G~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~ 313 (362)
T cd05173 234 GHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSV 313 (362)
T ss_pred HHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccch
Confidence 2358999999999999999999999999999999999999975
Q ss_pred chhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHh
Q 004173 719 PEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 767 (770)
Q Consensus 719 ~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~-s~~t~~~d~~H~~aq 767 (770)
.+|.++++||+|++||+||.++|+++|++|++ +|+|++++++|++|+
T Consensus 314 --~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~~ 361 (362)
T cd05173 314 --KDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVRK 361 (362)
T ss_pred --hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 36899999999999999999999999999995 889999999999986
No 12
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.3e-67 Score=574.76 Aligned_cols=286 Identities=37% Similarity=0.618 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
++|.+|.+++++|.+|+..||..++ .++.+.|++.|+...+.. .+.++++|+||++.+.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~--~~~~~~l~~~l~~~~~~~--~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~P~ 77 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE--SARQHVLRTGLGRVDSFL--LQNKCRLPLNPALDVKGIDVRECSYFNSNALPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhhhhhc--cCCCCccCCCCceEEEeEEcCceEEeccccCce
Confidence 3799999999999999999998754 367788999998754432 345899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhc
Q 004173 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (770)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (770)
+|+|.+.| |+.|.+|||+|||||||++++|+|++||+||+++|+|++|+||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05166 78 KISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVE 157 (353)
T ss_pred EEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred cC--------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------------
Q 004173 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------- 675 (770)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------- 675 (770)
+| .|.+||+++++++.+| .+|++||++|||||||+||||||||
T Consensus 158 ~g~~~~~~~~~l~~~l~~~~~~~~~~----~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~ 233 (353)
T cd05166 158 EGLTGSFKDRPIAKWLMKHNPSELEY----EKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGH 233 (353)
T ss_pred hCccccccchhHHHHHHHhCCChHHH----HHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhccc
Confidence 64 6899999999886554 5899999999999999999999999
Q ss_pred ------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHH
Q 004173 676 ------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 725 (770)
Q Consensus 676 ------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~ 725 (770)
|+.|+.|+++|+.||++||+|+++|++|+++|+++|||||+... ++.+
T Consensus 234 ~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~--~i~~ 311 (353)
T cd05166 234 AQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQ--DLKY 311 (353)
T ss_pred ccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchh--HHHH
Confidence 34578999999999999999999999999999999999999653 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHh
Q 004173 726 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 767 (770)
Q Consensus 726 l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq 767 (770)
+++||++++||+||.+||.++|++|+++++|+++|++|.+||
T Consensus 312 l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 312 VRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 13
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.3e-67 Score=573.15 Aligned_cols=287 Identities=29% Similarity=0.524 Sum_probs=261.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----ChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccC
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRG----NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~----~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~ 547 (770)
++|.+|++++++|..|+..||..+. .+.++.+.|++.|+.... + .+++++++|+||++.+.+|.+++|+||+|+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~ 79 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQN-L-NLPESFRVPYDPGLRAGALVIEKCKVMASK 79 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhh-c-cCCCCCCCCCCCceEEEEEEcCceEEEccc
Confidence 3689999999999999999998653 345667888988876432 2 467899999999999999999999999999
Q ss_pred cceeEEEEEeCCC-----CeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-ccc
Q 004173 548 LHPLRLTFRTASG-----GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (770)
Q Consensus 548 ~~P~~l~f~~~dg-----~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~t 621 (770)
++|++|+|++.|+ ..+.+|||+||||||||+++|+|++||+||+++|+|++|+||+|+|||+++||||||+ |.|
T Consensus 80 ~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~t 159 (365)
T cd00894 80 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 159 (365)
T ss_pred CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchh
Confidence 9999999999876 5799999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHhcc---------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-----------------
Q 004173 622 LAQILSEH---------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD----------------- 675 (770)
Q Consensus 622 l~~I~~~~---------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD----------------- 675 (770)
+++|+++. ..|.+||+++++++..+ .+|++||++|||||||+||||||||
T Consensus 160 l~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~----~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHI 235 (365)
T cd00894 160 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEKF----QAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHI 235 (365)
T ss_pred HHHHHHhcccccccccchhHHHHHHHhCCCHHHH----HHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEE
Confidence 99999863 24889999999876543 5899999999999999999999999
Q ss_pred ---------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 ---------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 ---------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
|+.|+.|+++|++||++||+|+++|++||++|+++||||++
T Consensus 236 DFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~ 315 (365)
T cd00894 236 DFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLT 315 (365)
T ss_pred eeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 45688999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHH
Q 004173 717 SDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSA-LFPQMVETIHRWA 766 (770)
Q Consensus 717 ~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s-~~t~~~d~~H~~a 766 (770)
..+ ++.++++||++++||+||.+||.++|++|+++ |+|++++++|++|
T Consensus 316 ~~~--~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~~~ 364 (365)
T cd00894 316 SKE--DIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHLVL 364 (365)
T ss_pred cch--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHHhc
Confidence 765 48999999999999999999999999999975 6789999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=1.8e-66 Score=566.77 Aligned_cols=286 Identities=38% Similarity=0.678 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecccCccee
Q 004173 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (770)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~S~~~P~ 551 (770)
++|.+|++|+++|.+|+..+|.. +++++|.+.|++.|++... .+++++++|+||++.|.+|++++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~~---~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 77 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLEN---NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKKKPL 77 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhhc---cCCCCccCCCCCceEEEEEeccceEEeccccCCc
Confidence 47999999999999999999987 4567888999999987543 2467899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhc
Q 004173 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (770)
Q Consensus 552 ~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~ 628 (770)
+|+|.+.| |+.|.+|||+|||||||++++|+|++||+||+++++|++|+||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (352)
T cd00891 78 WLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKK 157 (352)
T ss_pred EEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred cC---------cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------------
Q 004173 629 HR---------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------ 675 (770)
Q Consensus 629 ~~---------~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------ 675 (770)
++ +|.+||+++++++..| .+|++||++|||||||+||||||||
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg 233 (352)
T cd00891 158 AGGVGGAFKDNPLMNWLKKKNKGEEDY----EKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLG 233 (352)
T ss_pred cCccccccccchHHHHHHHhCCCHHHH----HHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhc
Confidence 54 5889999999886544 5899999999999999999999999
Q ss_pred -----------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhHHHHH
Q 004173 676 -----------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL 726 (770)
Q Consensus 676 -----------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~i~~l 726 (770)
|+.|+.|+.+|++||++||+|+++|++++++|+++|+||++.. .++.++
T Consensus 234 ~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~--~~i~~l 311 (352)
T cd00891 234 NFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSI--EDIEYL 311 (352)
T ss_pred cCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcH--HHHHHH
Confidence 3468999999999999999999999999999999999999954 468999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHh
Q 004173 727 QEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 767 (770)
Q Consensus 727 ~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq 767 (770)
++||++++||+||..+|.++|++|+++++|+++|++|++||
T Consensus 312 ~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 312 RDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997
No 15
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-64 Score=586.69 Aligned_cols=436 Identities=24% Similarity=0.382 Sum_probs=374.0
Q ss_pred HHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCC-CCHHHHHHHHHHHhcCChhHH
Q 004173 310 QLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVF-ESEEVRAYAVCILERADDDEL 388 (770)
Q Consensus 310 ~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f-~~~~VR~yAV~~L~~~~d~eL 388 (770)
.++-..-.-+...|+||+.|+. |....+-.--..-+..|+|.+|..+|.+|.+.. .||.+-+||+++|+..+.++.
T Consensus 1292 ~~v~~~~~~~~~i~~al~~~~~---~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~ 1368 (1803)
T KOG0902|consen 1292 RLVRFDPADLVHIPEALKLFVT---QKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEM 1368 (1803)
T ss_pred HHhhcChhhhhccHHHHHHHhc---cCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCChhhh
Confidence 3444456667788999998874 433322222233344699999999999999754 799999999999999999999
Q ss_pred HHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHcc--Cchhh-hhhHHHHHHHHHHHHhhCCCCCCC
Q 004173 389 QCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFH--DPVHA-KRFYSTHEILEESMMKLTPGVDGE 465 (770)
Q Consensus 389 ~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~--d~~~~-~r~~~~~~~l~~~~~~~l~~~~~~ 465 (770)
++|.||+||+|||+.. .....++|+-|.++.-+||++.|++++++. +.... ..+..+...+.+.++..+++
T Consensus 1369 ~fyvPQiVq~lryDkm--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~~~e~i~~~~s~---- 1442 (1803)
T KOG0902|consen 1369 LFYVPQIVQALRYDKM--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDRVREEITGSLSG---- 1442 (1803)
T ss_pred hhhhHHHHHHHhhcch--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHHHHHHHHhcCCc----
Confidence 9999999999999985 567889999999999999999999999974 22221 24555566677777766554
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHhhhhhcccCCCCcccCCCCcEEEEEEecCcceecc
Q 004173 466 DGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFK 545 (770)
Q Consensus 466 ~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPldP~~~i~~i~~~~~~v~~ 545 (770)
..++.+.|+.+|++++++|++.++..... ++|..++.+.|++++ + ..+++||.+|+..|.+|+.+..+.++
T Consensus 1443 ---~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik--~---~~~~YlPs~P~~~v~~i~~~Sg~plQ 1513 (1803)
T KOG0902|consen 1443 ---PARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK--V---QPGCYLPSNPDAVVLDIDYKSGTPLQ 1513 (1803)
T ss_pred ---hhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc--c---cCceecCCCCCceEEEeecCCCccch
Confidence 45678999999999999999999987543 455566777777643 2 34899999999999999999999999
Q ss_pred c-CcceeEEEEEe----CCCC----e------EEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCC
Q 004173 546 S-ALHPLRLTFRT----ASGG----T------CKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD 610 (770)
Q Consensus 546 S-~~~P~~l~f~~----~dg~----~------~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~ 610 (770)
| ++.|.+.+|+. .||. + ...|||.|||+|||+|++|+|.+|.+||+..|||+++-||+|+||++.
T Consensus 1514 S~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pG 1593 (1803)
T KOG0902|consen 1514 SAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPG 1593 (1803)
T ss_pred hhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCC
Confidence 9 59999999998 4553 1 258999999999999999999999999999999999999999999999
Q ss_pred CCccceec-cccHHHHHhc-cCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------
Q 004173 611 EGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------- 675 (770)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------- 675 (770)
||+||+|| +.|.+++.++ .+++++||+.+++++.+ .+. ++|+.||++|+|||||++|+|+++|
T Consensus 1594 cGVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s-~~f-q~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~ 1671 (1803)
T KOG0902|consen 1594 CGVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESS-EAF-QTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGH 1671 (1803)
T ss_pred CceEEeCCCCccHHHhcccccccHHHHHHHhcCccch-HHH-HHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCC
Confidence 99999999 8999998876 57899999999998753 222 6899999999999999999999999
Q ss_pred ---------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 ---------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 ---------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
+..|..|.++|++||+++|+|++-|++++.+|+++|+|||+
T Consensus 1672 ~iHIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1672 IIHIDFGFMFESSPGGNLGFEPPFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred EEEEeeeeEEecCCCCccCcCCCccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 44699999999999999999999999999999999999997
Q ss_pred CCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhh
Q 004173 717 SDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 768 (770)
Q Consensus 717 ~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~ 768 (770)
+. +|.+++.||+++|||.||+.++..+|.+|.++++|..||.+|+++|.
T Consensus 1752 g~---~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~YD~~Q~~~n~ 1800 (1803)
T KOG0902|consen 1752 GQ---TIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMYDQIQYLQNG 1800 (1803)
T ss_pred cc---hHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 79999999999999999999999999999999999999999999874
No 16
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1e-60 Score=511.67 Aligned_cols=240 Identities=30% Similarity=0.479 Sum_probs=223.6
Q ss_pred ccCCCCcEEEEEEecCcceecccC-cceeEEEEEeCCCC-------------eEEEEEeeCcchhHHHHHHHHHHHHHHH
Q 004173 524 RSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTASGG-------------TCKMIFKKGDDIRQDQLVVQMVSLMDRL 589 (770)
Q Consensus 524 ~lPldP~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~dg~-------------~~~~IfK~GDDLRQD~lvlQli~lmd~i 589 (770)
+||+||++.|.+|++++|+||+|+ ++|++++|++.|+. .+.+|||+|||||||++++|+|++||+|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 689999999999999999999997 78999999998753 4899999999999999999999999999
Q ss_pred HHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhc-cCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhh
Q 004173 590 LKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVI 667 (770)
Q Consensus 590 ~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~ 667 (770)
|+++|+|++|+||+|+|||+++||||||+ +.|+++|.+. .+++.+||.++++++... .+.+|++||++|||||||+
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~--~~~~a~~nF~~S~Agysv~ 158 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSL--AFQKARENFIRSMAAYSLI 158 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999886 468999999988764321 1258999999999999999
Q ss_pred hheecccC-----------------------------------------------------chhhhhhHHHHHHHHHHHH
Q 004173 668 TYILGIGD-----------------------------------------------------SQYYTRFKSYCCEAYNILR 694 (770)
Q Consensus 668 tYiLGIGD-----------------------------------------------------s~~~~~F~~~c~~af~~LR 694 (770)
|||||||| |+.|+.|+++|++||++||
T Consensus 159 tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR 238 (311)
T cd05167 159 SYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVR 238 (311)
T ss_pred HHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999 4568999999999999999
Q ss_pred cChhhHHHHHHHhccCCCCCCCCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhh
Q 004173 695 KSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 768 (770)
Q Consensus 695 k~~~lil~L~~lm~~s~ip~~~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~ 768 (770)
+|+++|++|+++|+++|+||++ ..++.++++||++++||+||.++|.++|++|+++|+|++||.+|+++|.
T Consensus 239 ~~~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~g 309 (311)
T cd05167 239 PYMDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQNG 309 (311)
T ss_pred cCHHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC
Confidence 9999999999999999999999 3478999999999999999999999999999999999999999999874
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=2.3e-52 Score=444.18 Aligned_cols=229 Identities=27% Similarity=0.461 Sum_probs=211.1
Q ss_pred EEecCcceecccC-cceeEEEEEeCCCC--eEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCC
Q 004173 535 GIVPSESSIFKSA-LHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (770)
Q Consensus 535 ~i~~~~~~v~~S~-~~P~~l~f~~~dg~--~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~ 611 (770)
+|.+-++++++|+ +.|.++.|...||. .+.+|||+|||||||++++|+|++||+||+++++|++|+||+|+|||+++
T Consensus 2 ~~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~ 81 (289)
T cd00893 2 SKIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTG 81 (289)
T ss_pred CcccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCc
Confidence 3566778999998 58999999988775 89999999999999999999999999999999999999999999999999
Q ss_pred Cccceec-cccHHHHHhcc-CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC--------------
Q 004173 612 GLLEFIP-SRSLAQILSEH-RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD-------------- 675 (770)
Q Consensus 612 GlIE~V~-s~tl~~I~~~~-~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD-------------- 675 (770)
|+||||+ +.|+++|++++ +++.+||.+.++++... .+.+|++||++|||||||+||||||||
T Consensus 82 GlIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~l 159 (289)
T cd00893 82 GIIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTE--AFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHI 159 (289)
T ss_pred eeEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCE
Confidence 9999999 99999999885 57999999888764321 124899999999999999999999999
Q ss_pred --------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCC
Q 004173 676 --------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 717 (770)
Q Consensus 676 --------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~ 717 (770)
|+.|+.|+++|+.||++||+|++.|++++++|+++|+||++.
T Consensus 160 iHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~ 239 (289)
T cd00893 160 IHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRG 239 (289)
T ss_pred EEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCH
Confidence 456899999999999999999999999999999999999992
Q ss_pred CchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhh
Q 004173 718 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 768 (770)
Q Consensus 718 ~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~ 768 (770)
.++.++++||++++||+||.++|.++|++|+++++|++||.+|+++|.
T Consensus 240 ---~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~g 287 (289)
T cd00893 240 ---STIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQNG 287 (289)
T ss_pred ---HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 378999999999999999999999999999999999999999999985
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=2.5e-50 Score=429.28 Aligned_cols=217 Identities=29% Similarity=0.481 Sum_probs=197.5
Q ss_pred cceeEEEEEeCC--CCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHH
Q 004173 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (770)
Q Consensus 548 ~~P~~l~f~~~d--g~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~ 624 (770)
.+|...+..+.. .+.+.+|||+|||||||+++||+|++||.||+++++|++|+||+|+|||+++||||||+ +.|+++
T Consensus 16 ~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~~ 95 (293)
T cd05168 16 ERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSIDS 95 (293)
T ss_pred HHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHHH
Confidence 455555444443 45899999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHhccC----cHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------------
Q 004173 625 ILSEHR----SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------- 675 (770)
Q Consensus 625 I~~~~~----~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------- 675 (770)
|+++++ +|.+||.++++++...+ .+|++||++|||||||+||||||||
T Consensus 96 i~k~~~~~~~~l~~~f~~~~~~~~~~~---~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg~ 172 (293)
T cd05168 96 LKKKLTSKFKSLLDFFKKTFGDPSERF---REAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLSN 172 (293)
T ss_pred HHHHhccCCchHHHHHHHHcCCCcHHH---HHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhcc
Confidence 998864 79999999988753333 5899999999999999999999999
Q ss_pred --------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccC-CCCCCCCCchhHHHHHHH
Q 004173 676 --------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS-NIPDIASDPEKGILKLQE 728 (770)
Q Consensus 676 --------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s-~ip~~~~~~d~~i~~l~~ 728 (770)
|+.|+.|+.+|+.||++||+|++.|++++++|+++ |+||++. +..++.++++
T Consensus 173 ~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~~ 251 (293)
T cd05168 173 SPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLRD 251 (293)
T ss_pred cccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHHH
Confidence 45689999999999999999999999999999988 9999996 4567899999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhh
Q 004173 729 KFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 768 (770)
Q Consensus 729 rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~ 768 (770)
||++++||++|.+||+++|++|+++++|++||.+|+++|.
T Consensus 252 r~~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~g 291 (293)
T cd05168 252 RFMLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTNG 291 (293)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999984
No 19
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=3.4e-49 Score=389.58 Aligned_cols=167 Identities=38% Similarity=0.662 Sum_probs=160.8
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCC
Q 004173 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (770)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~ 366 (770)
++|++|+.|+.+||++.||++||++||+||+++.++|+|||+||+||+|+++.++.+|+++|..|++++|+|||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCchhhhhhHH
Q 004173 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYS 446 (770)
Q Consensus 367 f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~~~~r~~~ 446 (770)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..||
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~~~R~-- 159 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSVSQRF-- 159 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877765
Q ss_pred HHHHHHHHHHh
Q 004173 447 THEILEESMMK 457 (770)
Q Consensus 447 ~~~~l~~~~~~ 457 (770)
+.+++.++.
T Consensus 160 --~~~le~~l~ 168 (171)
T cd00872 160 --GLLLEAYLR 168 (171)
T ss_pred --HHHHHHHHh
Confidence 667777764
No 20
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=2.4e-49 Score=389.81 Aligned_cols=159 Identities=58% Similarity=0.953 Sum_probs=156.9
Q ss_pred ccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhh
Q 004173 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCD 358 (770)
Q Consensus 279 d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~d 358 (770)
|+++||+++++++|+.|+.+||++.||++||++||+||+++.++|+|||+||+||+|+++.++++|+++|..|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCC-------CchHHHHHHHHHhhhchhhHHHHHHHH
Q 004173 359 ALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERS-------DKSRLSQFLVQRSSHNIELASFLRWYV 431 (770)
Q Consensus 359 ALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~-------~~s~La~fLi~rA~~n~~i~~~l~W~L 431 (770)
|||||++.|+|+.||+|||++|++++|++|.+||||||||||||++ ++|+|++|||+||++|++|||+|||+|
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred HHHccC
Q 004173 432 SVEFHD 437 (770)
Q Consensus 432 ~~e~~d 437 (770)
++|+||
T Consensus 161 k~E~~d 166 (166)
T cd00870 161 KVELED 166 (166)
T ss_pred hhhccC
Confidence 999986
No 21
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=2.3e-46 Score=375.61 Aligned_cols=176 Identities=43% Similarity=0.727 Sum_probs=157.6
Q ss_pred cCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhh
Q 004173 280 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDA 359 (770)
Q Consensus 280 ~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dA 359 (770)
+|+||+.+++++|+.|+++||+..||++||+++|+||+++.++|+|||+||+||+|+++.++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCch
Q 004173 360 LELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (770)
Q Consensus 360 LeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~ 439 (770)
|+||+++|+|+.||+|||++|++++|++|..||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~ 160 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE 160 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhhC
Q 004173 440 HAKRFYSTHEILEESMMKLT 459 (770)
Q Consensus 440 ~~~r~~~~~~~l~~~~~~~l 459 (770)
+..|+ ..+.+.++..+
T Consensus 161 ~~~r~----~~~~~~~l~~~ 176 (184)
T PF00613_consen 161 YSERY----QLLLEAFLDGC 176 (184)
T ss_dssp HHHHH----HHHHHHHHHHS
T ss_pred HHHHH----HHHHHHHHHHH
Confidence 76665 56677777643
No 22
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=6.2e-46 Score=364.37 Aligned_cols=165 Identities=35% Similarity=0.478 Sum_probs=154.2
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccc-cCCCHHHHHHHHHHhcccCCCCHhhhhhccCC
Q 004173 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSP 365 (770)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv-~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~ 365 (770)
+++++|+.|+.+||+..||++||++||++|++|.++|+|||+||+|| +|+ ..++.++++||+.|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~-~~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWD-WANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCc-HHHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999987 676 4679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCchhhhhhH
Q 004173 366 VFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFY 445 (770)
Q Consensus 366 ~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~~~~r~~ 445 (770)
.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||+.|++|||+|||+|++|++++.+..+
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~~~~~-- 158 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCYFSSA-- 158 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCchHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987554
Q ss_pred HHHHHHHHHHH
Q 004173 446 STHEILEESMM 456 (770)
Q Consensus 446 ~~~~~l~~~~~ 456 (770)
|+.+.+.+.
T Consensus 159 --~~~l~~a~~ 167 (169)
T cd00869 159 --YQDLGAALR 167 (169)
T ss_pred --HHHHHHHHh
Confidence 455655543
No 23
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=4.4e-45 Score=365.42 Aligned_cols=169 Identities=47% Similarity=0.753 Sum_probs=160.5
Q ss_pred ChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHh-hhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhcc
Q 004173 285 SNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSL-MSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELL 363 (770)
Q Consensus 285 ~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l-~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL 363 (770)
+.+++++|+.|+++||++.|+++||++||+||+++ .++|+|||+||+||+|+++.|+++++++|..|++++|++|||||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 67889999999999999999999999999999776 58999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCchhhhh
Q 004173 364 SPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKR 443 (770)
Q Consensus 364 ~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~~~~r 443 (770)
++.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++|+.+..|
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~~~r 163 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHYSIR 163 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHh
Q 004173 444 FYSTHEILEESMMK 457 (770)
Q Consensus 444 ~~~~~~~l~~~~~~ 457 (770)
+ +.+++.++.
T Consensus 164 ~----~~~le~~l~ 173 (184)
T smart00145 164 F----GLLLEAYLR 173 (184)
T ss_pred H----HHHHHHHHH
Confidence 5 566777765
No 24
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=1.1e-41 Score=331.60 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCC
Q 004173 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (770)
Q Consensus 287 ~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~ 366 (770)
.+++.+..|+.++|++.|+++||+++|++|+++.++|++||+||+||+|+++.++.+++++|..|++++|++||+||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccC
Q 004173 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHD 437 (770)
Q Consensus 367 f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d 437 (770)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|+.|||+|||+|++|+++
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 25
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-39 Score=366.58 Aligned_cols=205 Identities=27% Similarity=0.503 Sum_probs=189.2
Q ss_pred CeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhccC---cHHHHH
Q 004173 561 GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR---SIISYL 636 (770)
Q Consensus 561 ~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~---~l~~~l 636 (770)
...+||+|.||||||+.++.|+|.-|.+||.++|+++|++||+|+.||.++||||.|+ ++|+|+|.+... .+.+||
T Consensus 586 dL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~ 665 (847)
T KOG0903|consen 586 DLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFF 665 (847)
T ss_pred ceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999 999999999743 466777
Q ss_pred HhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-----------------------------------------
Q 004173 637 QKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD----------------------------------------- 675 (770)
Q Consensus 637 ~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD----------------------------------------- 675 (770)
..+++.....| ..|+.||+.||||||+|||+|+|+|
T Consensus 666 ~~~g~~NS~~y---k~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~ 742 (847)
T KOG0903|consen 666 AAFGKPNSEKY---KSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTT 742 (847)
T ss_pred HHhCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHH
Confidence 77665544455 5799999999999999999999999
Q ss_pred ----------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhcc-CCCCCCCCCchhHHHHHHHHcCCCCCHHHHHHHHH
Q 004173 676 ----------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG-SNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQ 744 (770)
Q Consensus 676 ----------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~-s~ip~~~~~~d~~i~~l~~rl~l~lse~eA~~~f~ 744 (770)
|+.|..|+.+|.++|.++|||++.|+.|+++|-+ +|+|||+..+ .++.++++||+|++|||++..++.
T Consensus 743 EylEvmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~-~Ti~nL~~RFhLslTEeq~~~lV~ 821 (847)
T KOG0903|consen 743 EYLEVMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGE-RTIQNLRQRFHLSLTEEQCQDLVL 821 (847)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCh-HHHHHHHHHhcccccHHHHHHHHH
Confidence 5779999999999999999999999999999986 9999999865 479999999999999999999999
Q ss_pred HHHHHHhhChhhHHHHHHHHHHhhc
Q 004173 745 DLINESVSALFPQMVETIHRWAQYW 769 (770)
Q Consensus 745 ~lI~~S~~s~~t~~~d~~H~~aq~~ 769 (770)
.||+.|++|++|++||.+|++++..
T Consensus 822 ~LI~kS~~S~~TrlYD~fQyitnGI 846 (847)
T KOG0903|consen 822 SLISKSLDSITTRLYDSFQYITNGI 846 (847)
T ss_pred HHHhhcccchhhhhhHHHHHHhccc
Confidence 9999999999999999999998753
No 26
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.3e-38 Score=404.67 Aligned_cols=477 Identities=24% Similarity=0.315 Sum_probs=324.5
Q ss_pred ccCCCCChHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCC--HHHHHHHHHHhcccCCCCH
Q 004173 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSD--VQEAKQALELMGRWEMIDV 356 (770)
Q Consensus 279 d~~lkp~~~~~~~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~--~~e~~~a~~LL~~W~~i~~ 356 (770)
...+...+.....+..+...+.+..-+...+...|...-.......+.......+.+.+ .....+..+++..+...+-
T Consensus 1486 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 1565 (2105)
T COG5032 1486 LKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLDL 1565 (2105)
T ss_pred hHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhhhcchhHH
Confidence 34444445555666666666666555666677777776665555556666555554433 3335566778888888888
Q ss_pred hhhhhccCC-CCCCHHHHHHHHH---------HHhcCCh-------------hHHHHhHHHHHH---HhhccCCCchHHH
Q 004173 357 CDALELLSP-VFESEEVRAYAVC---------ILERADD-------------DELQCYLLQLVQ---ALRFERSDKSRLS 410 (770)
Q Consensus 357 ~dALeLL~~-~f~~~~VR~yAV~---------~L~~~~d-------------~eL~~yLlQLVQ---aLkyE~~~~s~La 410 (770)
.+|.+++.. .+.++.-+.|..+ .-..+.+ .+-..|..-... +|..+.. ...|.
T Consensus 1566 ~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~-~~~l~ 1644 (2105)
T COG5032 1566 NSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLF-EPILA 1644 (2105)
T ss_pred HHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhH-HHHHH
Confidence 888888887 5555433333222 1111100 000000000000 1111110 11266
Q ss_pred HHHHHHhhhch--hhHHHHHHHHHHHccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 004173 411 QFLVQRSSHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIM 488 (770)
Q Consensus 411 ~fLi~rA~~n~--~i~~~l~W~L~~e~~d~~~~~r~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~ 488 (770)
.++-+++..+. .++.-..|.+..+..+-.........-......+.+.. +...+..+..+....+.-.++.
T Consensus 1645 q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~ 1717 (2105)
T COG5032 1645 QLLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKS-------PRKIRKKFKIDISLLNLSRKLY 1717 (2105)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhhhhHHHH
Confidence 77777777777 57788888887776543311000000011122222211 0123334445555544444444
Q ss_pred -HHhccCCCChhHHHHHHHHHHHhh---hhhcccCCCCcccCCC-CcEEEEEEecCcceeccc-CcceeEEEEEeCCCCe
Q 004173 489 -RDVGNVRGNTQKKIEKLRQLLSGL---LSELTYFEEPIRSPLA-PNILITGIVPSESSIFKS-ALHPLRLTFRTASGGT 562 (770)
Q Consensus 489 -~~vk~~~~~~~~k~e~L~~~L~~~---~~~l~~~~~~~~lPld-P~~~i~~i~~~~~~v~~S-~~~P~~l~f~~~dg~~ 562 (770)
..++..++..++..+......... .++.....-|...+.+ |.+.|.++.|+ ..+++| .++|.+++++++||+.
T Consensus 1718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~-~~~~~~~~~~p~rl~~rgsdG~~ 1796 (2105)
T COG5032 1718 ISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPE-VSVVKSHLQRPRRLTIRGSDGKL 1796 (2105)
T ss_pred HHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCc-eeeeecccccceEEEEEecCCcE
Confidence 333322211111111111110000 1111111224455555 89999999987 566666 8999999999999999
Q ss_pred EEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCC----CceeeeeEEEEecCCCCccceec-cccHHHHHhcc--------
Q 004173 563 CKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENL----DLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEH-------- 629 (770)
Q Consensus 563 ~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~l----dl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~-------- 629 (770)
|++++|+|||||||+++||++++||++|++++. |++++||+|+|||+++|+||||| +.|+++|.+++
T Consensus 1797 y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~ 1876 (2105)
T COG5032 1797 YSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISI 1876 (2105)
T ss_pred EEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCCh
Confidence 999999999999999999999999999999987 99999999999999999999999 89999998752
Q ss_pred ------------------------------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC----
Q 004173 630 ------------------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD---- 675 (770)
Q Consensus 630 ------------------------------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD---- 675 (770)
..+++||...++++.+|. .+|+||++|||||||+|||||+||
T Consensus 1877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~----~aR~Ny~~SlA~ySvigYiLglgDRH~~ 1952 (2105)
T COG5032 1877 DQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWL----TARTNFARSLAVYSVIGYILGLGDRHPG 1952 (2105)
T ss_pred hHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHH----HHHHHHHHHHHHHHHHHHHccCCCcCCc
Confidence 136788888888877764 799999999999999999999999
Q ss_pred -----------------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhc
Q 004173 676 -----------------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMA 708 (770)
Q Consensus 676 -----------------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~ 708 (770)
+..-|.|+.+|+.+|.+||+|++.|++++++|+
T Consensus 1953 NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~ 2032 (2105)
T COG5032 1953 NILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALRKNADSLMNVLELFV 2032 (2105)
T ss_pred eEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 222356999999999999999999999999999
Q ss_pred cC------CCCCCCCCchhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHhh
Q 004173 709 GS------NIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 768 (770)
Q Consensus 709 ~s------~ip~~~~~~d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s~~t~~~d~~H~~aq~ 768 (770)
++ +.||++..+..++.++.+||++++++.++..++.-+|++|+.++.|+.+|..|..++|
T Consensus 2033 ~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~y 2098 (2105)
T COG5032 2033 RDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMY 2098 (2105)
T ss_pred cCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhc
Confidence 99 9999995556678899999999999999999999999999999999999999999998
No 27
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=100.00 E-value=2.2e-38 Score=310.75 Aligned_cols=138 Identities=49% Similarity=0.832 Sum_probs=129.7
Q ss_pred CCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEE
Q 004173 45 SSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 124 (770)
Q Consensus 45 ~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~ 124 (770)
.+++.++.+++||+|||||||+|||.|++|+|++|++.+.|||||+|||+|+|||++|+||||||++.+++++.+|||+|
T Consensus 22 ~~~~~~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~ 101 (159)
T cd08397 22 SGSNVSPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTT 101 (159)
T ss_pred hccccCCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEE
Confidence 77778889999999999999999999999999999999999999999999999999999999999998877789999999
Q ss_pred EeeecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhccc
Q 004173 125 ILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQ 183 (770)
Q Consensus 125 ~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~G~ 183 (770)
++|||++|+||+|++.|++||+.++|+..+++ |++.+++..+||+||||++|||++|+
T Consensus 102 ~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~-~~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 102 LSLFNKDGTLRRGRQKLRVWPDVEADGSIPTS-TGKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred EeeECCCCcEecCCEEEEEEeCCCCCCccccC-CCCccCcchhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999998887 44455667899999999999999995
No 28
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=4.2e-37 Score=320.64 Aligned_cols=177 Identities=23% Similarity=0.450 Sum_probs=163.3
Q ss_pred EEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCC
Q 004173 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (770)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~~ 610 (770)
++. ++++|++|+++|++++|.++||+.|.+|+|+|||||||++++|++++||.+|+++ +++++++||+|+|+|++
T Consensus 3 ~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~~ 81 (237)
T cd00892 3 GFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNEE 81 (237)
T ss_pred ccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCCC
Confidence 444 5699999999999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred CCccceec-cccHHHHHhcc--CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------
Q 004173 611 EGLLEFIP-SRSLAQILSEH--RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------ 675 (770)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~--~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------ 675 (770)
+|+||||+ +.|+++|++++ ..+.+||.++++++..|+ ++++||+.|||||||+||||||||
T Consensus 82 ~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~t 157 (237)
T cd00892 82 CGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAWL----KARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNT 157 (237)
T ss_pred CceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCC
Confidence 99999999 89999999974 368899999999877664 689999999999999999999999
Q ss_pred --------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 --------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 --------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
....+.|+..|+.++.+||+|++.|++++++|+.+++-+|+
T Consensus 158 G~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 158 GDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEGLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCCchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 11258999999999999999999999999999998876664
No 29
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=1.6e-36 Score=315.81 Aligned_cols=177 Identities=25% Similarity=0.396 Sum_probs=162.6
Q ss_pred EEEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecC
Q 004173 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (770)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~ 609 (770)
.++. +.++||+|+++|++++|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|+
T Consensus 2 ~~~~-~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 2 VGFD-ERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCcC-CceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 4555 4699999999999999999999999999999999999999999999999999975 7899999999999999
Q ss_pred CCCccceec-cccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------
Q 004173 610 DEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------- 675 (770)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------- 675 (770)
++|+||||+ +.|+++|+++ ..+.+||.+.++++.+|+ ++++||++|||+||++||||||||
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-~~l~~~~~~~~~~~~~~~----~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG 155 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-DLLRRALVEMSASPEAFL----SLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETG 155 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-HHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCC
Confidence 999999999 9999999986 678999999988877765 789999999999999999999999
Q ss_pred --------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 --------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 --------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
....+.|+..|+.++.+||+|++.|++++++++..++-+|+
T Consensus 156 ~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 156 GLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKADGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred cEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCCChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 12458999999999999999999999999999988775553
No 30
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=6.6e-36 Score=308.59 Aligned_cols=164 Identities=42% Similarity=0.683 Sum_probs=154.0
Q ss_pred EecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhc-CCCceeeeeEEEEecCCCCcc
Q 004173 536 IVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE-NLDLHLTPYNVLATGQDEGLL 614 (770)
Q Consensus 536 i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~-~ldl~l~~Y~Vl~t~~~~GlI 614 (770)
+..++++||+|+++|+++.|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++++++|+|+|+|+++|+|
T Consensus 3 ~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlI 82 (219)
T cd00142 3 IDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLI 82 (219)
T ss_pred ccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEE
Confidence 4457899999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ceec-cccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------
Q 004173 615 EFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------ 675 (770)
Q Consensus 615 E~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------ 675 (770)
|||+ +.|++ ..+.+||...+++++.|+ ++++||++|||+||++||||||||
T Consensus 83 E~v~~~~sl~------~~l~~~~~~~~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hI 152 (219)
T cd00142 83 EVVPGSVTLE------DDLSKWLKRKSPDEDEWQ----EARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHI 152 (219)
T ss_pred EEeCCCchhH------HHHHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEE
Confidence 9999 99999 457789999999877664 799999999999999999999999
Q ss_pred --------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhcc
Q 004173 676 --------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG 709 (770)
Q Consensus 676 --------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~ 709 (770)
.+.++.|+..|+.+|.+||+|++.|++++++|+.
T Consensus 153 Dfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~ 218 (219)
T cd00142 153 DFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFGPFRSLCVKAMLILRRHAGLLLNLLSLMLR 218 (219)
T ss_pred eeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhhhHHHHHHHHHHHHHhChHHHHHHHHHhcc
Confidence 2357999999999999999999999999999985
No 31
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=4.6e-35 Score=313.00 Aligned_cols=177 Identities=25% Similarity=0.440 Sum_probs=157.3
Q ss_pred EEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecCC
Q 004173 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQD 610 (770)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~----ldl~l~~Y~Vl~t~~~ 610 (770)
++. ++++|++|+++|++|+|.++||+.|.+|+|+|||||||++++|++++||.+|++++ .++.++||.|+|+|++
T Consensus 3 ~f~-~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~~ 81 (280)
T cd05169 3 SFD-PVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSPN 81 (280)
T ss_pred ccc-CeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCCC
Confidence 445 45999999999999999999999999999999999999999999999999999974 8999999999999999
Q ss_pred CCccceec-cccHHHHHhccC--------------------------------------------cHHHHHHhhCCCCCC
Q 004173 611 EGLLEFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDEHG 645 (770)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~~ 645 (770)
+||||||+ +.|+.+|++++. .+.+||...++++..
T Consensus 82 ~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 161 (280)
T cd05169 82 VGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSSEA 161 (280)
T ss_pred cceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHH
Confidence 99999999 899999976410 245566666676666
Q ss_pred CCcccHHHHhhhhccchhhhhhhheecccC--------------------------------------------------
Q 004173 646 PFGITATCLETFIKSCAGYSVITYILGIGD-------------------------------------------------- 675 (770)
Q Consensus 646 ~~~~~~~a~~nFi~S~AgysV~tYiLGIGD-------------------------------------------------- 675 (770)
|+ +++.||++|||+|||+||||||||
T Consensus 162 w~----~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG 237 (280)
T cd05169 162 WL----ERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALG 237 (280)
T ss_pred HH----HHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhC
Confidence 64 789999999999999999999999
Q ss_pred -chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 -SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 -s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
....+.|+..|+.++.+||+|++.|++++++|+.+++-+|+
T Consensus 238 ~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 238 VSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred CCCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 12347899999999999999999999999999999887764
No 32
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=3.3e-34 Score=282.75 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=134.0
Q ss_pred HHHHHHcCCCCCCCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCCC-C
Q 004173 291 SIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFE-S 369 (770)
Q Consensus 291 ~L~~i~~~~p~~~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~-~ 369 (770)
.+..+.+++ +..|+.+++++||+||+++.++|+||++|| +|++..++.++++.|..|+|++|++|||||++.|+ |
T Consensus 9 av~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~ 84 (175)
T cd00871 9 AIHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGH 84 (175)
T ss_pred HHHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCC
Confidence 356666776 889999999999999999999999999997 69999999888888889999999999999999998 7
Q ss_pred HHHHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhchhhHHHHHHHHHHHccCch
Q 004173 370 EEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (770)
Q Consensus 370 ~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~~i~~~l~W~L~~e~~d~~ 439 (770)
+.||+|||++|+++++|++.+||||||||||||. ++.|++|||+||..|..|||+|||+|++|++.++
T Consensus 85 ~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~--~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 85 PLVLQYAVRVLESYPVETVFFYIPQIVQALRYDK--MGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999998 5899999999999999999999999999997554
No 33
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1e-34 Score=300.12 Aligned_cols=164 Identities=23% Similarity=0.472 Sum_probs=151.6
Q ss_pred EEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecCC
Q 004173 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQD 610 (770)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~----ldl~l~~Y~Vl~t~~~ 610 (770)
++. +.++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|++++ ++++++||+|+|+|++
T Consensus 3 ~~~-~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~~ 81 (222)
T cd05164 3 SFD-DAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNSR 81 (222)
T ss_pred ccc-CeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCCC
Confidence 455 45999999999999999999999999999999999999999999999999999987 9999999999999999
Q ss_pred CCccceec-cccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC--------------
Q 004173 611 EGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD-------------- 675 (770)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD-------------- 675 (770)
+|+||||+ +.|++++ +.+|+...++++.+|+ ++++||+.|||+||++||||||||
T Consensus 82 ~GliE~v~~~~sl~~~------l~~~~~~~~~~~~~~~----~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~ 151 (222)
T cd05164 82 SGLIEWVEGTTTLKPV------LKKWFWLQFPDPEQWF----AARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGE 151 (222)
T ss_pred CceEEEcCCcchHHHH------HHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCc
Confidence 99999999 9999965 5678999999887765 689999999999999999999999
Q ss_pred ------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhcc
Q 004173 676 ------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG 709 (770)
Q Consensus 676 ------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~ 709 (770)
...++.|+..|+.++.+||+|++.|++++++|+.
T Consensus 152 v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~ 221 (222)
T cd05164 152 VVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEGLFRKICEQTLEVFRKHRDTLIAFLEVFVY 221 (222)
T ss_pred EEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCChHHHHHHHHHHHHHhCHHHHHHHHHHHhc
Confidence 1235899999999999999999999999999974
No 34
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=4e-34 Score=305.28 Aligned_cols=174 Identities=23% Similarity=0.372 Sum_probs=156.9
Q ss_pred CcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCCcc
Q 004173 539 SESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLL 614 (770)
Q Consensus 539 ~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~~~GlI 614 (770)
+++.|+.|+++|++|++.++||+.|.+|+|+|||||||+++||++++||++|+++ ++++.+++|.|+|+|+++|||
T Consensus 6 ~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~~GLI 85 (279)
T cd05171 6 DVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPRAGIL 85 (279)
T ss_pred CeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCCceEE
Confidence 4589999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ceec-cccHHHHHhccC--------------------------------------------cHHHHHHhhCCCCCCCCcc
Q 004173 615 EFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDEHGPFGI 649 (770)
Q Consensus 615 E~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~~~~~~ 649 (770)
|||+ +.|+.+|++++. .+.+||.+.++++..|+
T Consensus 86 e~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~~~~-- 163 (279)
T cd05171 86 EWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQDWF-- 163 (279)
T ss_pred EECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHHHHH--
Confidence 9999 999999976420 13567777788776665
Q ss_pred cHHHHhhhhccchhhhhhhheecccC--------------------------------------------------chhh
Q 004173 650 TATCLETFIKSCAGYSVITYILGIGD--------------------------------------------------SQYY 679 (770)
Q Consensus 650 ~~~a~~nFi~S~AgysV~tYiLGIGD--------------------------------------------------s~~~ 679 (770)
+++.||++|||+|||+|||||||| ....
T Consensus 164 --~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g~~ 241 (279)
T cd05171 164 --ERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITGVE 241 (279)
T ss_pred --HHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCCCc
Confidence 789999999999999999999999 1225
Q ss_pred hhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 680 TRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 680 ~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
+.|+..|+.++.+||+|++.|++++++|+.+++-+|+
T Consensus 242 g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 242 GVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred chHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 8999999999999999999999999999999886664
No 35
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=99.98 E-value=2.5e-32 Score=294.91 Aligned_cols=177 Identities=20% Similarity=0.380 Sum_probs=150.4
Q ss_pred EEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCC
Q 004173 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (770)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~~ 610 (770)
++. ++++|++|+++|++|+|.++||+.|.+|+|+|||||||++++|++++||.+|+++ ..++.++||.|+|++++
T Consensus 3 ~f~-~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~~ 81 (307)
T cd05170 3 SVG-STVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGPR 81 (307)
T ss_pred ccc-CeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCCC
Confidence 344 4689999999999999999999999999999999999999999999999999995 57999999999999999
Q ss_pred CCccceec-cccHHHHHhccC---------------------------------cHHHHH--------------------
Q 004173 611 EGLLEFIP-SRSLAQILSEHR---------------------------------SIISYL-------------------- 636 (770)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~~---------------------------------~l~~~l-------------------- 636 (770)
+||||||+ +.|+.+|++++. .+...+
T Consensus 82 ~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 161 (307)
T cd05170 82 SGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVLR 161 (307)
T ss_pred cceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHHH
Confidence 99999999 899999865310 001111
Q ss_pred -------------------HhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC----------------------
Q 004173 637 -------------------QKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD---------------------- 675 (770)
Q Consensus 637 -------------------~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD---------------------- 675 (770)
...++++..|+ .++++|++|||+||++||||||||
T Consensus 162 ~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~----~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~ 237 (307)
T cd05170 162 QVLDELMQETPKDLLARELWCSSTTSSEWW----SVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNV 237 (307)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHh
Confidence 11233333443 678999999999999999999999
Q ss_pred ----------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 ----------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 ----------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
....+.|+..|+.++.+||+|++.|++++++++..++-+|+
T Consensus 238 ~f~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 238 CFEKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred hhcccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 22368999999999999999999999999999999887765
No 36
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.1e-30 Score=321.61 Aligned_cols=363 Identities=18% Similarity=0.298 Sum_probs=259.4
Q ss_pred HHHHHHHHHhcCChhHHHHhHHHHHHHhhccCCCchHHHHHHHHHhhhch--hhHHHHHHHHHHHccCchhhhhhHHHHH
Q 004173 372 VRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHE 449 (770)
Q Consensus 372 VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE~~~~s~La~fLi~rA~~n~--~i~~~l~W~L~~e~~d~~~~~r~~~~~~ 449 (770)
+-+.--+++..+|......-++||+..+.+-.. ..++-| ++.+.+- ...++-+|++.+-...... .|. +++.
T Consensus 1875 in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~---dV~~vl-~~II~~l~~~YPqq~lW~~~a~~kS~~p-~R~-~R~k 1948 (2382)
T KOG0890|consen 1875 INSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ---DVARVL-KHIIAKLVLAYPQQTLWQSAALSKSNVP-SRV-ERCK 1948 (2382)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch---HHHHHH-HHHHHHHHHhCchHHHHHHHHHHhcccH-HHH-HHHH
Confidence 344444688899999999999999999998763 333322 2223332 4557999999887765332 221 2234
Q ss_pred HHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHh-----h----hhhc----
Q 004173 450 ILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSG-----L----LSEL---- 516 (770)
Q Consensus 450 ~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~-----~----~~~l---- 516 (770)
.++..-+. .+. ...+.+..+..+-++|.+++..=...+.+...=...++++... . ...+
T Consensus 1949 eIL~k~~~----~~~----~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptl 2020 (2382)
T KOG0890|consen 1949 EILTKSRR----QKP----DYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTL 2020 (2382)
T ss_pred HHHHHHHh----cCc----cHHHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhccccc
Confidence 44443331 111 1223456888888999998874322211100001223322211 0 0000
Q ss_pred ccCCC--CcccCCCCcE----EEEEEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHH
Q 004173 517 TYFEE--PIRSPLAPNI----LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLL 590 (770)
Q Consensus 517 ~~~~~--~~~lPldP~~----~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~ 590 (770)
+.++. .-..|.+|-. .|.|+. ++++||.|.++|++|.++|+||+.|.+|+|..||||+|.+.|++-.+||+++
T Consensus 2021 P~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL 2099 (2382)
T KOG0890|consen 2021 PLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLL 2099 (2382)
T ss_pred ccccCcccccCCCCCCCCcchhhhcch-HHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHH
Confidence 00000 0112222322 367776 6799999999999999999999999999999999999999999999999999
Q ss_pred Hhc----CCCceeeeeEEEEecCCCCccceec-cccHHHHHhc-c-----------------------------------
Q 004173 591 KLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-H----------------------------------- 629 (770)
Q Consensus 591 ~~~----~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~-~----------------------------------- 629 (770)
+++ ...|.++||.|||++.+||+||||| ..++.+|+.+ |
T Consensus 2100 ~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~~~~~~~~~~~~~~~~~F~~~~l 2179 (2382)
T KOG0890|consen 2100 RKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLRSVHLKKQMAKEEKGKVFREKLL 2179 (2382)
T ss_pred hhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHHHhcCcHhhcccchhhhhHHhhc
Confidence 995 5789999999999999999999999 7889988764 1
Q ss_pred ----CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------------------------------
Q 004173 630 ----RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------------ 675 (770)
Q Consensus 630 ----~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------------ 675 (770)
...++||...||+|.+|| .+|.||+||.|++||||||||+||
T Consensus 2180 pkfPPVFheWFl~~FPeP~sW~----~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetl 2255 (2382)
T KOG0890|consen 2180 PKFPPVFHEWFLESFPEPGSWF----ASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETL 2255 (2382)
T ss_pred ccCCcHHHHHHHHhCCCchHHH----HHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCccc
Confidence 136799999999999998 799999999999999999999999
Q ss_pred --------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCC----------c-hhHHH
Q 004173 676 --------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD----------P-EKGIL 724 (770)
Q Consensus 676 --------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~----------~-d~~i~ 724 (770)
....|.|++.|+.++.++|+|.+.++++++.+++.++-+++.. + ...|.
T Consensus 2256 evPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~~~~i~ 2335 (2382)
T KOG0890|consen 2256 EVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINEDRLVIG 2335 (2382)
T ss_pred CCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccchHHHHh
Confidence 2246999999999999999999999999999999877666532 1 23466
Q ss_pred HHHHHcCCCC----CHHHHHHHHHHHHHHHhhC
Q 004173 725 KLQEKFRLDL----DDEACVHFFQDLINESVSA 753 (770)
Q Consensus 725 ~l~~rl~l~l----se~eA~~~f~~lI~~S~~s 753 (770)
.+++|++--+ -.-....+...||++|++-
T Consensus 2336 ~i~~rlqG~~~~~glPLSveGq~~~LI~eATse 2368 (2382)
T KOG0890|consen 2336 RIRGRLQGAMKVDGLPLSVEGQASSLIEEATSE 2368 (2382)
T ss_pred HHHHHHhccCcCCCCccchhhHHHHHHHHhcCH
Confidence 7888887522 1223445889999999874
No 37
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=99.97 E-value=2.3e-32 Score=279.00 Aligned_cols=145 Identities=48% Similarity=0.857 Sum_probs=137.0
Q ss_pred EEEEeeCcchhHHHHHHHHHHHHHHHHHhcC----CCceeeeeEEEEecCCCCccceec-cccHHHHHhccCcHHHHHHh
Q 004173 564 KMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHRSIISYLQK 638 (770)
Q Consensus 564 ~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~----ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~ 638 (770)
.+|||+|||||||++++|++++||.+|++++ ++++++||+|+|+|+++|+||||+ +.|+++| +.+||.+
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------l~~~~~~ 74 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------LYDWFKK 74 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------HHHHHHH
Confidence 3799999999999999999999999999987 999999999999999999999999 9999999 8899999
Q ss_pred hCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC-------------------------------------------
Q 004173 639 FHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------------------------------------------- 675 (770)
Q Consensus 639 ~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------------------------------------------- 675 (770)
.++++..|+ ++++||++|||+|||+||||||||
T Consensus 75 ~~~~~~~~~----~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~ 150 (202)
T smart00146 75 KFPDPEDYF----EARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 150 (202)
T ss_pred HCcCHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHH
Confidence 999877654 799999999999999999999999
Q ss_pred -------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCC
Q 004173 676 -------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 718 (770)
Q Consensus 676 -------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~ 718 (770)
+..++.|+..|+.++.+||+|++.|++++++|+.+++|||...
T Consensus 151 ~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 151 MVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 2357999999999999999999999999999999999999864
No 38
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.97 E-value=2.7e-31 Score=296.81 Aligned_cols=227 Identities=25% Similarity=0.398 Sum_probs=183.8
Q ss_pred CCCCcccCCCCcEEEEEEecCcceecccC-cceeEEEEEeC---------------------------------------
Q 004173 519 FEEPIRSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTA--------------------------------------- 558 (770)
Q Consensus 519 ~~~~~~lPldP~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~--------------------------------------- 558 (770)
.+.|+-.|++|++.++.|+...++|+.|+ ++|-|+.|.+.
T Consensus 934 ~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1374)
T PTZ00303 934 LPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKG 1013 (1374)
T ss_pred CCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhcccccccc
Confidence 45689999999999999999999999997 88988888642
Q ss_pred -----------------------CCC-----------eEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEE
Q 004173 559 -----------------------SGG-----------TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNV 604 (770)
Q Consensus 559 -----------------------dg~-----------~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~V 604 (770)
+|. .+.+|||.| |||||||++|||++||+||+++|+|++|+||+|
T Consensus 1014 ~~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRV 1092 (1374)
T PTZ00303 1014 TGAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSV 1092 (1374)
T ss_pred cCCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEE
Confidence 111 489999996 999999999999999999999999999999999
Q ss_pred EEecCCCCccceeccccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC---------
Q 004173 605 LATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD--------- 675 (770)
Q Consensus 605 l~t~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD--------- 675 (770)
||||.+.||||+|++.++++|.+ +.|.+||+..+ ..+++||++|||||||+||||||||
T Consensus 1093 LATG~dsGLIEfVps~tLAsI~~--~~Il~YLr~~~----------t~~~~NFi~S~AGYsViTYILgIgDRHngNILId 1160 (1374)
T PTZ00303 1093 LPLSCDSGLIEKAEGRELSNLDN--MDIASYVLYRG----------TRSCINFLASAKLFLLLNYIFSIGDRHKGNVLIG 1160 (1374)
T ss_pred EeccCCcccEEEecchHHHHhhh--hHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHhccCcccCCceeEc
Confidence 99999999999999889999975 45999998422 2357899999999999999999999
Q ss_pred -----------------------------------------------------------------------------c--
Q 004173 676 -----------------------------------------------------------------------------S-- 676 (770)
Q Consensus 676 -----------------------------------------------------------------------------s-- 676 (770)
+
T Consensus 1161 ~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa 1240 (1374)
T PTZ00303 1161 TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPA 1240 (1374)
T ss_pred CCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCC
Confidence 0
Q ss_pred -----------hhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCC-CCCCCCCchhHHHH-HHHHcCCCCCHHHHHHHH
Q 004173 677 -----------QYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSN-IPDIASDPEKGILK-LQEKFRLDLDDEACVHFF 743 (770)
Q Consensus 677 -----------~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~-ip~~~~~~d~~i~~-l~~rl~l~lse~eA~~~f 743 (770)
+.-..|..-....|..+|.++..+.-|+.-.+.-. +| .. + ..+.. +.--|.-+.+++.+...|
T Consensus 1241 ~p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~-~~-~--~e~~~~~nt~f~r~as~~s~~~~f 1316 (1374)
T PTZ00303 1241 SPTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVP-YN-D--AEMLNMLNTLFDRHASQTSSASKF 1316 (1374)
T ss_pred CcccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCC-cc-H--HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 12367888888899999999999998888777433 44 22 2 22333 334456678888888899
Q ss_pred HHHHHHHhhChhhHHHHHHHH
Q 004173 744 QDLINESVSALFPQMVETIHR 764 (770)
Q Consensus 744 ~~lI~~S~~s~~t~~~d~~H~ 764 (770)
..-+++|.+-. .+-|..|.
T Consensus 1317 ~~~~k~s~~~~--~lkdvth~ 1335 (1374)
T PTZ00303 1317 STTMKESVNVC--RLKDVTHS 1335 (1374)
T ss_pred HHHHHHhcCce--eecccccc
Confidence 99999988743 33344443
No 39
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.97 E-value=1e-30 Score=255.97 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=104.0
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEe
Q 004173 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (770)
Q Consensus 12 ~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (770)
=|++.|++|||.++++- |..+.+++||+|||||||++||.|++|++++| +.+.|||||+|
T Consensus 4 wd~~~~~~v~i~~~~~~-------------------~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f 63 (158)
T cd08398 4 WKINSNLRIKILCATYV-------------------NVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY 63 (158)
T ss_pred eeCCCCeEEEEEeeccC-------------------CCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc
Confidence 38899999999997663 22345899999999999999999999999998 66789999999
Q ss_pred cccccCcCccCceEEEEEeecCCC----CceeEeEEEEeeecccccccccceeEEeecCCC
Q 004173 92 STKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 148 (770)
Q Consensus 92 pi~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~ 148 (770)
||+|+||||+|+||||||++.+.+ +..+|||+|++|||++|+||+|.++|++||..+
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCc
Confidence 999999999999999999997532 347999999999999999999999999999643
No 40
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.97 E-value=8.6e-32 Score=259.98 Aligned_cols=132 Identities=42% Similarity=0.720 Sum_probs=105.6
Q ss_pred CceEEEEEEEeCCcccccce-eeccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCc----eeEeEEEEe
Q 004173 53 PELYVECALYIDGAPFGLPM-RTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE----RLVGGTTIL 126 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~-~T~~~~~~-~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~----~~vG~~~~~ 126 (770)
++++|+|+|||||++||.|+ .|++++++ ....|||||+|||.|+||||+|+|||+||++...... .+|||++++
T Consensus 2 ~~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 2 SKLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred CeEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 57999999999999999999 89999988 7889999999999999999999999999999876555 899999999
Q ss_pred eecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccc---cchhhhhhH
Q 004173 127 LFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQR---VDWLDRLTF 195 (770)
Q Consensus 127 LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l~~~~~~G~~~~---~~wlD~l~~ 195 (770)
|||+++.||+|.+.|++||..++++..++ +|++|+++++++|++|++++ ++|||++||
T Consensus 82 lFd~~~~L~~G~~~L~lW~~~~~~~~~~~-----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 82 LFDYRGQLRQGPQKLSLWPDEEPDPSGPT-----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp SB-TTSBBEEEEEEEE-EET-TTSS---------------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred eECCCCcccCCCEEEEEEcCCCCcccccc-----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 99999999999999999998877655332 58899999999999999999 999999986
No 41
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.96 E-value=2.9e-29 Score=249.37 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=101.6
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEE
Q 004173 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (770)
Q Consensus 11 s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (770)
.-|++.|++|||.+++- +. + .......++|+|+||||++++| |++|++++|++.+.|||||+
T Consensus 5 lwdi~~~friki~~~~~--~~---~------------~~~~~~~l~V~~~Ly~g~~~l~-~~~T~~~~~~~~~~WnEwL~ 66 (178)
T cd08399 5 LWDCDRKFRVKILGIDI--PV---L------------PRNTDLTVFVEANIQHGQQVLC-QRRTSPKPFTEEVLWNTWLE 66 (178)
T ss_pred eEecCCCEEEEEEeecc--cC---c------------CCCCceEEEEEEEEEECCeecc-cceeeccCCCCCccccccEE
Confidence 45999999999998872 21 1 1223468999999999888887 55899999999999999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEeeecccccccccceeEEeecCC
Q 004173 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (770)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~ 147 (770)
|||+|+|||++|+|||+||++.+++ ++.||||+|++|||++++||+|.+.|++||..
T Consensus 67 f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 67 FDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred CccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 9999999999999999999985421 36799999999999999999999999999954
No 42
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.96 E-value=3.3e-29 Score=249.36 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=108.0
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEE
Q 004173 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (770)
Q Consensus 11 s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (770)
+-|++.+++|+|.++++-.. ....++++|+|+|||||++||.|++|++++|.+.+.|||||+
T Consensus 3 ~w~~~~~f~i~i~~~~~~~~------------------~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~ 64 (173)
T cd08693 3 LWDIEEKFSITLHKISNLNA------------------AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLE 64 (173)
T ss_pred eeccCCCEEEEEEEeccCcc------------------CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEE
Confidence 34899999999999987421 235689999999999999999999999999988899999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEeeecccccccccceeEEeecCCCC
Q 004173 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEA 149 (770)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~ 149 (770)
|||+|+||||+|+|||+||++.... +..+|||+|++|||+++.||+|.+.|+|||..+.
T Consensus 65 F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~~~~ 139 (173)
T cd08693 65 FDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTYAED 139 (173)
T ss_pred cccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCCCcc
Confidence 9999999999999999999986432 2579999999999999999999999999997664
No 43
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.96 E-value=3.7e-29 Score=248.97 Aligned_cols=156 Identities=23% Similarity=0.409 Sum_probs=130.3
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeec----cccCCCCcccc
Q 004173 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTR----LESMGPMYCWN 86 (770)
Q Consensus 11 s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~----~~~~~~~~~Wn 86 (770)
+.|++.+++|+|.++.+..+.. .+..+++||+|+|||||++||.|+.|+ +++|...+.||
T Consensus 3 ~~~v~~~~~i~v~~~h~~~~~~----------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wn 66 (171)
T cd04012 3 ASTVTDLLSVTVSSLHRIPPTW----------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWD 66 (171)
T ss_pred cccccccEEEEEEEeecCChHH----------------hhccccEEEEEEEEECCEECcCceeccccccccCcccccccc
Confidence 5689999999999999975532 223588999999999999999999996 67787778899
Q ss_pred ccEEecccccCcCccCceEEEEEeecCCC---------CceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCC
Q 004173 87 EPITLSTKYRDLTAHSQLALTVWDVSCGK---------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTST 157 (770)
Q Consensus 87 ewl~fpi~~~dLP~~a~L~~ti~~~~~~~---------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~ 157 (770)
|||+|||+|+||||+|+|||+||++.... ++.+|||+|++|||++|.||+|.+.|+|||..++++..+.++
T Consensus 67 ewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~~~~~~~ 146 (171)
T cd04012 67 EWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNPLGPAPP 146 (171)
T ss_pred ceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCcCCCCCc
Confidence 99999999999999999999999987654 468999999999999999999999999999877765432211
Q ss_pred CCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEee
Q 004173 158 PGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQ 230 (770)
Q Consensus 158 p~~~~~~~~~~~~rle~l~~~~~~G~~~~~~wlD~l~~~~i~~~~~~~~~~~~~~~~~L~iefp~f~~~vv~~ 230 (770)
+ +....+++.|.|+||.+..+|+|+
T Consensus 147 ~------------------------------------------------~~~~~~~~~l~i~fp~~~~~v~f~ 171 (171)
T cd04012 147 P------------------------------------------------LFEQPDRVILQIDFPSSAFDVIFP 171 (171)
T ss_pred C------------------------------------------------CcCCCCccEEEEeCCCccccccCC
Confidence 0 112335789999999999998874
No 44
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.96 E-value=2.4e-28 Score=239.46 Aligned_cols=125 Identities=29% Similarity=0.493 Sum_probs=108.1
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEE
Q 004173 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (770)
Q Consensus 11 s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (770)
.-|++.+++|||.++.|... +....++++|+|+|||||+++|.+..|...++...+.|||||+
T Consensus 3 l~di~~~~~i~i~~~~~~~~-----------------~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~ 65 (156)
T cd08380 3 LWDINFNLRIKIHGITNINL-----------------LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65 (156)
T ss_pred eeecCCCeEEEEEeeccccc-----------------cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeE
Confidence 35899999999999999633 2334689999999999999987776665554446788999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC--CceeEeEEEEeeecccccccccceeEEeecCCCCCCC
Q 004173 91 LSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 152 (770)
Q Consensus 91 fpi~~~dLP~~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~~~d~~ 152 (770)
|||.|+||||+|+|||+||++..+. ++.+|||+|++|||++|.||+|.+.|++||..++++.
T Consensus 66 F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~ 129 (156)
T cd08380 66 FDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPR 129 (156)
T ss_pred ccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCcc
Confidence 9999999999999999999998654 5789999999999999999999999999998887754
No 45
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.95 E-value=4.7e-28 Score=252.00 Aligned_cols=151 Identities=32% Similarity=0.569 Sum_probs=125.9
Q ss_pred eEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceec-cccHHHHHhcc-----------
Q 004173 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEH----------- 629 (770)
Q Consensus 562 ~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~----------- 629 (770)
+|++|||+|||||||++++|++++||.+|++++...++++|.|+|+++++|+||||+ +.|+.+|.+++
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999999999 89999999863
Q ss_pred ------------------CcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC----------------
Q 004173 630 ------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD---------------- 675 (770)
Q Consensus 630 ------------------~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD---------------- 675 (770)
..+.+||...+++.+.|+ +++.+|++|+|+|||++||||+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~ 156 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWF----EARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELI 156 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHHH----HHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEE
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhhH----hhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceee
Confidence 136789999988876553 689999999999999999999999
Q ss_pred -------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCC
Q 004173 676 -------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 716 (770)
Q Consensus 676 -------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~ 716 (770)
+..++.|+..|+.++.+||+|.+.|++++++|+.+++++|+
T Consensus 157 hIDfg~~f~~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 157 HIDFGFIFGGKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp E--HSSCTTHHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eEEeHHhhhccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 12468999999999999999999999999999999999986
No 46
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1e-25 Score=279.63 Aligned_cols=371 Identities=19% Similarity=0.233 Sum_probs=262.6
Q ss_pred hhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCCCCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhh-cc
Q 004173 324 RALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALR-FE 402 (770)
Q Consensus 324 ~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLk-yE 402 (770)
.||+-.+.|..-.+..++.-..++-..|=. ++....|-.---+-+...|....+...-||--.|. -|
T Consensus 2240 ~Alt~Yl~cl~~~~~~D~~~i~R~cslWfs------------ns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~ 2307 (2806)
T KOG0892|consen 2240 LALTNYLNCLSESDEYDVDLIFRCCSLWFS------------NSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSE 2307 (2806)
T ss_pred HHHHhHHHHHhhcccccHHHHHHHhhhhcc------------ccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhcccc
Confidence 477778888888888887777788888821 23345666666666778899999999999999998 23
Q ss_pred -CCCchHHHHHHHHHhhhchh-hHHHHHHHHHHHccCchhh--hhh-HHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHH
Q 004173 403 -RSDKSRLSQFLVQRSSHNIE-LASFLRWYVSVEFHDPVHA--KRF-YSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQ 477 (770)
Q Consensus 403 -~~~~s~La~fLi~rA~~n~~-i~~~l~W~L~~e~~d~~~~--~r~-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q 477 (770)
..-..+|.+.+-+++...|- -++.++=.+..+-. ++.. .|- ..+...+.+.++- ...++ .+..+.+|
T Consensus 2308 ~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd-~e~~n~sr~sl~~~rki~a~l~~--~~v~~-----~~~~~v~~ 2379 (2806)
T KOG0892|consen 2308 NNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRD-NEDENRSRGSIDRDRKIAAELDL--CDVNQ-----GAGNMVRQ 2379 (2806)
T ss_pred CchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcC-hhhhhhcccccchhHHHHHHHhh--hHhhc-----cchhHHHH
Confidence 33357888888888888884 44555544444331 2211 121 1233444443321 01111 11245555
Q ss_pred H-HHHHHHHHHHHHhccCCCChhHHHHHHH---HHHHhhhhhcccCC-CCcccCCCCc------EEEEEEecCcceeccc
Q 004173 478 T-ELTAQLCSIMRDVGNVRGNTQKKIEKLR---QLLSGLLSELTYFE-EPIRSPLAPN------ILITGIVPSESSIFKS 546 (770)
Q Consensus 478 ~-~~~~~L~~i~~~vk~~~~~~~~k~e~L~---~~L~~~~~~l~~~~-~~~~lPldP~------~~i~~i~~~~~~v~~S 546 (770)
+ .+.+....+|. .+........|.-++. ..+... ++...+ +...++.+++ ..|.+.. +++.+..-
T Consensus 2380 v~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~~--nl~~v~~pT~ev~v~~s~~~~~~p~i~s~~-~~v~~~~G 2455 (2806)
T KOG0892|consen 2380 LECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQL--NLEGVPPPTMNVKVNDSGDYGNIPTVVSFD-DTVTFAGG 2455 (2806)
T ss_pred HHHHHHHHHHHhc-CcccccchhhhhhcCccccHHHhhh--hccCCCCCCCCccccCCcccCCCceEEecc-cceeeecC
Confidence 5 46677777777 5443221122211111 111111 111111 1233444544 3466666 55777775
Q ss_pred CcceeEEEEEeCCCCeEEEEEe-eCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCCccceec-cc
Q 004173 547 ALHPLRLTFRTASGGTCKMIFK-KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SR 620 (770)
Q Consensus 547 ~~~P~~l~f~~~dg~~~~~IfK-~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~~~GlIE~V~-s~ 620 (770)
-..|++|++.++||+.+.-++| +|||||||..|.|+|...|.+++.. +++|.|+||+|+|+|+.+|+||||. ++
T Consensus 2456 inaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~ti 2535 (2806)
T KOG0892|consen 2456 INAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTI 2535 (2806)
T ss_pred ccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCe
Confidence 6899999999999999999999 7799999999999999999999986 6899999999999999999999999 99
Q ss_pred cHHHHHhc--------cC-------------------------------------cHHHHHHhhCCCCCCCCcccHHHHh
Q 004173 621 SLAQILSE--------HR-------------------------------------SIISYLQKFHPDEHGPFGITATCLE 655 (770)
Q Consensus 621 tl~~I~~~--------~~-------------------------------------~l~~~l~~~~~~~~~~~~~~~~a~~ 655 (770)
++++++.. |+ .++.||.++|++|..|| +++.
T Consensus 2536 plgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WF----ekrl 2611 (2806)
T KOG0892|consen 2536 PLGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWF----EKRL 2611 (2806)
T ss_pred ehhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHH----HHHH
Confidence 99998871 11 24567789999998887 8999
Q ss_pred hhhccchhhhhhhheecccC--------------------------------------------------chhhhhhHHH
Q 004173 656 TFIKSCAGYSVITYILGIGD--------------------------------------------------SQYYTRFKSY 685 (770)
Q Consensus 656 nFi~S~AgysV~tYiLGIGD--------------------------------------------------s~~~~~F~~~ 685 (770)
+|+||.|+-||+|||||+|| ++..|.||..
T Consensus 2612 aYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrRc 2691 (2806)
T KOG0892|consen 2612 AYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRC 2691 (2806)
T ss_pred HHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCchHHHHHH
Confidence 99999999999999999999 3457999999
Q ss_pred HHHHHHHHHcChhhHHHHHHHhccCCCCCCCCCchhH
Q 004173 686 CCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKG 722 (770)
Q Consensus 686 c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~~d~~ 722 (770)
|+.++.+||++...++++++.++..++=.|...|-++
T Consensus 2692 cE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~ 2728 (2806)
T KOG0892|consen 2692 CEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKA 2728 (2806)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHH
Confidence 9999999999999999999999998887776555433
No 47
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=99.94 E-value=1.1e-26 Score=244.61 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=152.5
Q ss_pred ecccCcceeEEEEEeCCCCeEEEEEe--eCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEEEEecCCCCccce
Q 004173 543 IFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEF 616 (770)
Q Consensus 543 v~~S~~~P~~l~f~~~dg~~~~~IfK--~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~Vl~t~~~~GlIE~ 616 (770)
|..|+++|.+|++.++||+.|.+++| .|+|+|+|++++|++++||.+++++ ..++.+++|.|+|+++++|+|||
T Consensus 11 v~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPLs~~~gLie~ 90 (253)
T cd05163 11 VRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPLSPQIRLVED 90 (253)
T ss_pred EccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEcCCccceEEE
Confidence 56788999999999999999999999 5789999999999999999999864 56899999999999999999999
Q ss_pred ec-cccHHHHHhc--------------cCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC------
Q 004173 617 IP-SRSLAQILSE--------------HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD------ 675 (770)
Q Consensus 617 V~-s~tl~~I~~~--------------~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD------ 675 (770)
|+ +.|+.+|..+ ...+.+||.+.++++..|+ .++.+|++|+|++|++|||||+||
T Consensus 91 ~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~----~~r~~ft~s~A~~s~~gYilglgdRh~~ni 166 (253)
T cd05163 91 DPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYW----LFRKQFTYQLALLSFMTYILSINNRNPDKI 166 (253)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCCchhE
Confidence 99 8999998752 1148899999999988776 689999999999999999999999
Q ss_pred ---------------------------------------------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccC
Q 004173 676 ---------------------------------------------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 710 (770)
Q Consensus 676 ---------------------------------------------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s 710 (770)
....|.|+..|+.+..+||++...+++++++++..
T Consensus 167 li~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~D 246 (253)
T cd05163 167 FISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRD 246 (253)
T ss_pred EEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcC
Confidence 12359999999999999999999999999999988
Q ss_pred CCCCC
Q 004173 711 NIPDI 715 (770)
Q Consensus 711 ~ip~~ 715 (770)
++-+|
T Consensus 247 pl~~W 251 (253)
T cd05163 247 ELIAW 251 (253)
T ss_pred hhhhh
Confidence 87555
No 48
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=99.81 E-value=3.8e-20 Score=168.55 Aligned_cols=88 Identities=25% Similarity=0.387 Sum_probs=71.9
Q ss_pred EEEEeecCCCCCC-------CCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEec
Q 004173 20 FRVDRLEGTLPSI-------KSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS 92 (770)
Q Consensus 20 ~ki~~l~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp 92 (770)
+||++|+|....+ ++|.+.+ .+++ ++++|+|||||||++||.|++|++++|.+.+.|||||+||
T Consensus 1 ~ki~sL~~~~~~~~~~~~~~~~~~l~~-----~~~~----~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~ 71 (100)
T smart00142 1 VKIESLWDCDRNLVITIALIHGIPLNW-----SRDY----SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP 71 (100)
T ss_pred CcEEEeecCCCceEEEEEEeeCCCccc-----ccCc----ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc
Confidence 3677777755421 3444332 2222 7999999999999999999999999999999999999999
Q ss_pred ccccCcCccCceEEEEEeecCCCC
Q 004173 93 TKYRDLTAHSQLALTVWDVSCGKD 116 (770)
Q Consensus 93 i~~~dLP~~a~L~~ti~~~~~~~~ 116 (770)
|+|+||||+|+|||+||++.++.+
T Consensus 72 i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 72 IQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred CchhcCChhhEEEEEEEEeeCCcc
Confidence 999999999999999999876544
No 49
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.61 E-value=8.7e-17 Score=205.17 Aligned_cols=190 Identities=23% Similarity=0.422 Sum_probs=158.8
Q ss_pred ccCCCCcEEEEEEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcC----CCcee
Q 004173 524 RSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHL 599 (770)
Q Consensus 524 ~lPldP~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~----ldl~l 599 (770)
+-|--|.+.|.++. .+..|+.|+++|.++..+++||+.|.++.|++.|+|||+++||++.+||.++..+. ..+.+
T Consensus 1950 y~~~~~~i~i~~f~-~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~i 2028 (2341)
T KOG0891|consen 1950 YDPGKPIIRIQSFE-PKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTI 2028 (2341)
T ss_pred cCCCceEEehhhcc-HHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 33445556666665 45899999999999999999999999999999999999999999999999999874 67889
Q ss_pred eeeEEEEecCCCCccceec-cccHHHHHhccC-------------------------------------------cHHHH
Q 004173 600 TPYNVLATGQDEGLLEFIP-SRSLAQILSEHR-------------------------------------------SIISY 635 (770)
Q Consensus 600 ~~Y~Vl~t~~~~GlIE~V~-s~tl~~I~~~~~-------------------------------------------~l~~~ 635 (770)
..|.++|.+++.|+|+||+ +.|++.+++++. .++.-
T Consensus 2029 q~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~ 2108 (2341)
T KOG0891|consen 2029 QRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKV 2108 (2341)
T ss_pred HHhhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHH
Confidence 9999999999999999999 999998887521 11122
Q ss_pred HHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC----------------------------------------
Q 004173 636 LQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD---------------------------------------- 675 (770)
Q Consensus 636 l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD---------------------------------------- 675 (770)
+.-+.++...|+ ..+.||++|.|++|+++||+|+||
T Consensus 2109 lwlkS~ssEaw~----~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfR 2184 (2341)
T KOG0891|consen 2109 LWLKSPSSEAWL----DRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFR 2184 (2341)
T ss_pred HHHhCCChhHHH----HHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHH
Confidence 222344444554 678999999999999999999999
Q ss_pred -----------chhhhhhHHHHHHHHHHHHcChhhHHHHHHHhccCCCCCCCCC
Q 004173 676 -----------SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 718 (770)
Q Consensus 676 -----------s~~~~~F~~~c~~af~~LRk~~~lil~L~~lm~~s~ip~~~~~ 718 (770)
++.-+.|+..|..+..++|.+-+..++.++.++.+++-+++..
T Consensus 2185 lTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~ 2238 (2341)
T KOG0891|consen 2185 LTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLD 2238 (2341)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcc
Confidence 3345899999999999999999999999999998877666654
No 50
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.16 E-value=0.0033 Score=60.53 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|.||++.+..+++.+.. ..|.-+.-..++.|||.+.|+|.-.+|+. +.|.|+||+.....+...||.+.++.+.
T Consensus 34 ~~d~yVkv~l~~~~~~~~~-~kT~v~~~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 34 HTSVYVKVSLMIHNKVVKT-KKTEVVDGAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCeEEEEEEEECCEEeee-eecccEeCCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 4788999999988776533 25655544566889999999998888875 8899999998876677899999999764
No 51
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=97.03 E-value=0.0043 Score=59.48 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (770)
.+|-||.+++.+|++... ...|..+.-+..+.|||.+.|+|.-.++. ++.|.|+|||.....+...||.+.+..+...
T Consensus 34 ~~DPyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 34 GSDPFVKIQLVHGLKLIK-TKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCeEEEEEEEcCCcccc-eEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 478899999987776542 23454444445688999999999877776 5689999999877677789999988776544
Q ss_pred c
Q 004173 132 M 132 (770)
Q Consensus 132 ~ 132 (770)
+
T Consensus 112 ~ 112 (135)
T cd08410 112 P 112 (135)
T ss_pred c
Confidence 3
No 52
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=96.98 E-value=0.0051 Score=59.33 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=57.9
Q ss_pred CceEEEEEEEeCCcccccceeeccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~-~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
+|-||.+.|+.+++.+..- .|+.+--+ +++.|||-+.|+|...++ +.+|.+++||....++...||++.++.-.
T Consensus 35 ~dpYVKV~L~~~~k~~~Kk-KT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 35 LSFFVKVGMFSTGGLLYKK-KTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCcEEEEEEEECCCcceee-cCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 4689999999999988543 45544333 457799999999998653 68999999998766666789999887753
No 53
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.96 E-value=0.009 Score=56.93 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.|..+..... ..+|+.+.-...+.|||.+.|+|.-.+|+. ..|.|+||+...-++...+|.+.++|=+
T Consensus 36 ~~dpYVkv~llp~~~~~~-k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 36 KCHPYVKVCLLPDKSHNS-KRKTAVKKGTVNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCeEEEEEEEeCCcccc-eeecccccCCCCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 467799999986654332 235655544556889999999988777764 6799999998765567799999999843
No 54
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.96 E-value=0.0088 Score=56.38 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=69.7
Q ss_pred eEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccc
Q 004173 6 FRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCW 85 (770)
Q Consensus 6 ~~~~~s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~W 85 (770)
+.|.++.+ .-.+.|+|..-.+-.+. . ...+|-||.+.+..+.+.. ...+|..+.-+.++.|
T Consensus 4 l~~~l~y~-~~~L~V~Vi~A~~L~~~----------------~-~~~~DpyVkv~l~~~~~~~-~~~kT~v~~~~~nP~w 64 (122)
T cd08381 4 VKLSISYK-NGTLFVMVMHAKNLPLL----------------D-GSDPDPYVKTYLLPDPQKT-TKRKTKVVRKTRNPTF 64 (122)
T ss_pred EEEEEEEe-CCEEEEEEEEeeCCCCC----------------C-CCCCCCEEEEEEeeCCccC-CceeCCccCCCCCCCc
Confidence 44555555 55567776655543211 1 2346779999998654332 2335655544566889
Q ss_pred cccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 86 NEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 86 newl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
||.+.|++ ...++ .++.|.|+|||.....+...+|.+.++|=+
T Consensus 65 nE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 65 NEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred ccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 99999997 55555 467899999998765567799999999943
No 55
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.86 E-value=0.0099 Score=51.62 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (770)
..+.||.+.+...+ ....+|....-...+.|||-+.|++.-.+ ...|.|+||+....++...+|++.+++.+-.
T Consensus 20 ~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 20 KSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHcc
Confidence 46779999887555 23345555554557889998888876655 8999999999876656789999999988753
No 56
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=96.86 E-value=0.0082 Score=58.12 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=59.2
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
+|-||.+.|..+++.+.. ..|+.+.-..++.|||.++|+|.-.+|... .|.|+|||....++...+|++.+++-
T Consensus 38 ~DpYVKv~l~~~~~k~~k-kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~-~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 38 IDVSVKVTLKHQNAKLKK-KQTKRAKHKINPVWNEMIMFELPSELLAAS-SVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCeEEEEEEEcCCcccce-eccceeeCCCCCccccEEEEECCHHHhCcc-EEEEEEEeCCCCcCcceeceEEecCc
Confidence 688999999998877633 356555445568899999999997777654 59999999987667779999999884
No 57
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.85 E-value=0.014 Score=55.51 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
..++.||.+.|..+++....-.+|+-+.-..++.|||.++|||...+|. +..|.|+||+....++...+|++.++|=+.
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 3578899999997765433333555443455688999999999988876 468999999987656677999999998543
No 58
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.84 E-value=0.013 Score=55.53 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=57.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+..++..... .+|+.+.-+..+.|||.+.|+|...+|.. ..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~DpyVkv~l~p~~~~~~~-~kT~v~~~t~nP~wnE~f~f~i~~~~l~~-~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 36 RSNPYVKTYLLPDKSRQSK-RKTSIKRNTTNPVYNETLKYSISHSQLET-RTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred CCCcEEEEEEEcCCccccc-eEeeeeeCCCCCcccceEEEECCHHHhCC-CEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 4677999999866643322 25655444456889999999999888844 5699999998766677799999999843
No 59
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.84 E-value=0.012 Score=55.50 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.+|-||.+.+..++.... ..+|..+.-...+.|||.+.|++.-.+|. +..|.|+|||...-.+...+|.+.++|=+.
T Consensus 36 ~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 36 RSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 467799999986654321 22566555455688999999999887874 357999999987655677999999998443
No 60
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.75 E-value=0.013 Score=55.84 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|.||.+.+..+++... ..+|..+.-+..+.|||...|++...++. ++.|.|+|||....++...+|.+.+++-.
T Consensus 35 ~~dpyV~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 35 TSDPYVKVWLMYKDKRVE-KKKTVIKKRTLNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCceEEEEEEeCCCccc-cccCcceeCCCCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 467899999887665442 23555444445688999999998776654 67899999998765566789999998754
No 61
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.71 E-value=0.022 Score=54.31 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||++.+-.+++... ..+|..+.-+..+.|||.+.|++...+|. ++.|.|+|||...-++...+|.+.+++=
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 35 LSDPYVKIHLMQNGKRLK-KKKTTIKKRTLNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CCCCeEEEEEEECCcccc-eeeccceeCCCCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 467799999876665442 23455444345688999999998877764 4679999999876566779999999983
No 62
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.61 E-value=0.02 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.213 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~LFd 129 (770)
.+|-||.+.|..+++... ..+|+.+.-+..+.|||.+.|++.-.++.. .|.|+||+..... +...+|++.++|=+
T Consensus 31 ~~dpYVkv~l~p~~~~~~-~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 31 TCNSYVKISLSPDKEVRF-RQKTSTVPDSANPLFHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKS 106 (119)
T ss_pred CCCeeEEEEEEeCCCCcc-eEeCccccCCCCCccccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHH
Confidence 467799999987664432 225655544556889999999998888753 6889999976543 35799999999944
No 63
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.57 E-value=0.031 Score=53.11 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred ceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCcc
Q 004173 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (770)
Q Consensus 5 ~~~~~~s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (770)
.|++.|..+- ..++|+|.+-.+-.+. ... ...+|-||.+.+..+.+. ..+|..+.-+.++.
T Consensus 6 ~~~l~y~~~~-~~L~V~Vi~a~~L~~~--------------~~~-~~~~DpyV~v~l~~~~~~---~~kT~v~~~t~nP~ 66 (128)
T cd08388 6 FFSLRYNSEK-KALLVNIIECRDLPAM--------------DEQ-SGTSDPYVKLQLLPEKEH---KVKTRVLRKTRNPV 66 (128)
T ss_pred EEEEEEECCC-CEEEEEEEEeECCCCC--------------CCC-CCCcCCEEEEEEeCCcCc---eeeccEEcCCCCCc
Confidence 3445554443 3567777766553221 001 134677999998754332 23555444455688
Q ss_pred ccccEEe-cccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEeec
Q 004173 85 WNEPITL-STKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (770)
Q Consensus 85 Wnewl~f-pi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp 145 (770)
|||...| .+...++... .|.|+|||...-++...+|.+.++|=+-. +. |...+.+|.
T Consensus 67 wnE~F~f~~~~~~~~~~~-~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--~~-~~~~~~~~~ 124 (128)
T cd08388 67 YDETFTFYGIPYNQLQDL-SLHFAVLSFDRYSRDDVIGEVVCPLAGAD--LL-NEGELLVSR 124 (128)
T ss_pred eeeEEEEcccCHHHhCCC-EEEEEEEEcCCCCCCceeEEEEEeccccC--CC-CCceEEEEE
Confidence 9999999 5777776654 59999999876556779999999995432 22 233377885
No 64
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.54 E-value=0.01 Score=56.16 Aligned_cols=91 Identities=21% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCceEEEEEEEeCCcccccc-eeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLP-MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p-~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.+|-||.+.|.....+-... .+|..+.-+-++.|||.++|+|.-.+.+..+.|.|+|||....++..+||.+.++|=+-
T Consensus 19 ~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~ 98 (120)
T cd08395 19 MFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDI 98 (120)
T ss_pred CCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHC
Confidence 46789999997322222222 24554433346889999999998777888999999999986555567999999997432
Q ss_pred cccccccceeEEeecCC
Q 004173 131 KMQLKTGKQKLRLWPGK 147 (770)
Q Consensus 131 ~~~Lr~G~~~L~lwp~~ 147 (770)
. .+|. ..+|..-
T Consensus 99 ~---~~~~--~~~w~~L 110 (120)
T cd08395 99 A---QAGS--CACWLPL 110 (120)
T ss_pred c---CCCc--EEEEEEC
Confidence 2 3332 4678643
No 65
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.52 E-value=0.025 Score=54.60 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=58.6
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..+|-||.+.|..+++....- .|+-+.-+.++.|||.+.|+|.-.+|+ ++.|.|+||+....++...+|.+.+....
T Consensus 34 g~~DpyVkv~l~~~~~~~~k~-kT~v~k~t~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 34 TTADPFVKVYLLQDGRKISKK-KTSVKRDDTNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCeEEEEEEEeCCcccccc-CCccccCCCCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 347889999999888765432 454444445688999999998777755 47899999998766667789999986653
No 66
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.51 E-value=0.024 Score=54.75 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=58.3
Q ss_pred CCceEEEEEEEeC-CcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYID-GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~-~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|.||.++|..+ ++.++. ..|+.+.-...+.|||.+.|+|.-.+|+ +..|.|+||+.....+...+|.+.+++..
T Consensus 35 ~~dpyVkv~llp~~~~~~~~-~kT~v~~~t~nPvfnEtF~f~i~~~~l~-~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 35 APDTYVKLTLLNSDGQEISK-SKTSIRRGQPDPEFKETFVFQVALFQLS-EVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCeeEEEEEEeCCCcceee-ccceeecCCCCCcEeeeEEEECCHHHhC-ccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 4788999999864 555443 3565555456788999999999877754 56799999998876677899998888764
No 67
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.50 E-value=0.024 Score=53.43 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=57.8
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|.||++.+..++... ...+|..+.-+..+.|||.+.|++.-.+| ....|.|+|||.....+...+|.+++++-+
T Consensus 34 ~~dpyv~v~l~~~~~~~-~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 34 LSDPYVKVSLLQGGKKL-KKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCcEEEEEEEcCCeEe-eeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 47889999998766443 22345444445568899999999877666 467899999998765667899999999977
No 68
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=96.47 E-value=0.03 Score=52.89 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=59.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|=||.+.|..+++. ...+|+-+.-+-++.|||.+.|+|...+|+. ..|.|+|||...-++..+||.+.+++=
T Consensus 31 ~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 31 GCECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred CCCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 3677999999876552 2446766655566889999999999999875 579999999987767789999999883
No 69
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.47 E-value=0.032 Score=52.28 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=55.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+..++.. .-+|..+.-...+.|||.+.|++...+|+ +..|.|+|||...-.+...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~---~~kT~v~~~t~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 109 (124)
T cd08387 36 TADPYCKVRLLPDRSN---TKQSKIHKKTLNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAE 109 (124)
T ss_pred CCCCeEEEEEecCCCC---cEeCceEcCCCCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEeccc
Confidence 3677999988655433 23565554456688999999999888874 56799999998665566789999998854
No 70
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.44 E-value=0.031 Score=53.42 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+..+++.+. ..+|..+.-+..+.|||...|++.-.++ .+..|.|+|||...-++...||.+.+++.+
T Consensus 35 ~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 35 LADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 468899999987765542 2345444334568899999999887777 567799999998765567799999998876
No 71
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.40 E-value=0.024 Score=53.07 Aligned_cols=74 Identities=22% Similarity=0.344 Sum_probs=55.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+..+++ ...+|....-+..+.|||.+.|++...++. +..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 36 TSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred CCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 367799998864432 234566555456789999999998776664 46899999998765566799999999954
No 72
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.36 E-value=0.024 Score=53.72 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=55.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+..++... ....|..+.-+..+.|||.+.|++.-.+++ ...|.|+|||.....+...+|.+.+++
T Consensus 33 ~~DpyV~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 33 YSDPFVKLYLKPDAGKK-SKHKTQVKKKTLNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCcEEEEEEEcCCCcc-CCceeeeEeccCCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 46779999987554332 223565555556689999999998877764 567999999987655677999999988
No 73
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.35 E-value=0.049 Score=55.08 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=53.7
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCCCC------ceeEeEEEEeeecccccccccceeEEeecCC
Q 004173 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD------ERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (770)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~------~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp~~ 147 (770)
.+.+.|+|-|+..+. .+|....-|.||+|.++...+ +.++|-+-+||+. +|+|+.|.+.|.+-...
T Consensus 64 nk~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~~~ 135 (179)
T cd08696 64 NKSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSLEK 135 (179)
T ss_pred CCCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEecC
Confidence 456789999888777 467889999999999875322 4789999999996 77899999999886543
No 74
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.23 E-value=0.029 Score=51.69 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+-..++. ..+|..+.-+..+.|||.+.|++...++-.++.|.|+|||...-.+...+|.+.+++=+
T Consensus 22 ~~Dpyv~v~~~~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 22 SSDPYVTASFAKFGKP---LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCccEEEEEccCCCc---cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 3577999887654432 24566655556789999999998877776778999999998765556789999998843
No 75
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.22 E-value=0.049 Score=51.85 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||++.+..+|+.. ..-+|..+.-+..+.|||-+.|++.-.++. +..|.|+|||....++...||.+.+++.
T Consensus 34 ~~dpyvkv~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 34 FSDPYVKVSLMCEGRRL-KKKKTSVKKNTLNPTYNEALVFDVPPENVD-NVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCceEEEEEEeCCccc-ceecCCcccCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 46789999998776543 223454443345688999999998766664 3568999999877666779999999876
No 76
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.21 E-value=0.016 Score=56.69 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=54.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEE-eecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVW-DVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~-~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||.+.|..+++... --+|..+.-+.++.|||.++|+|. +.+..|.|+|| +.....+...+|.+.++|=
T Consensus 50 ~sDPYVKv~Llp~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~ 122 (146)
T cd04028 50 LPAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILLD 122 (146)
T ss_pred CcCCeEEEEEECCCcccc-ceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEcc
Confidence 356799999998776653 235655555566889999999987 57889999999 4544445678999999993
No 77
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.15 E-value=0.052 Score=46.07 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEE
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 124 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~ 124 (770)
.++.||++.+-..+. .-..|..+.-...+.|||-+.|++...++.. |.|.|||....++...+|.+.
T Consensus 19 ~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 19 KPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEEE
T ss_pred cccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEEC
Confidence 477888887765444 2345666666677899999999977666666 999999988766678899763
No 78
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=96.14 E-value=0.033 Score=51.23 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+ ++ ...+|+...-...+.| ||.++|++.-.+| .++.|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~Dpyv~v~~--~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 20 LTDAFVEVKF--GS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCceEEEEE--CC----eeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 4677998876 33 3345655544456889 9999999887775 367899999997765566789999998854
No 79
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.13 E-value=0.053 Score=50.68 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+..++.. ..+|+.+.-+..+.|||.+.|++ ...++ .+..|.|+|||...-++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~~~~~~~~---~~kT~v~~~t~~P~Wne~f~f~~~~~~~l-~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 36 TSDPFVKIYLLPDKKH---KLETKVKRKNLNPHWNETFLFEGFPYEKL-QQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CCCceEEEEECCCCCc---ceeeeeecCCCCCccceeEEEcccCHHHh-CCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 3577999988543322 24565555556788999999984 33333 456899999998765566789999999843
No 80
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.11 E-value=0.025 Score=57.68 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=55.4
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCC----CCceeEeEEEEeeecccc-cccccceeEEeecCC
Q 004173 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----KDERLVGGTTILLFNSKM-QLKTGKQKLRLWPGK 147 (770)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~----~~~~~vG~~~~~LFd~~~-~Lr~G~~~L~lwp~~ 147 (770)
.+.+.|+|.|.+.|...+. ..+-|.|+++-++.. +.+.|||-+=++|+..+| +|+.|.+.|.||...
T Consensus 63 ~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d 134 (196)
T cd08694 63 VDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVD 134 (196)
T ss_pred cCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEec
Confidence 4567899999999998777 578999999987632 234799999999997766 999999999999643
No 81
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.03 E-value=0.046 Score=50.88 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=55.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+..+++.. .+|..+.-...+.|||.++|+|.-.++. ...|.|+|||....++...+|.+.++|=+
T Consensus 35 ~~dpyV~v~l~~~~~~~---~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 35 HCDPFVKVCLLPDERRS---LQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCCcEEEEEEeeCCCCc---eEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 36779999987655432 3555554455688999999998777774 35799999998776667899999999954
No 82
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.01 E-value=0.055 Score=51.02 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ ++... ..+|..+.-+..+.|||.+.|++ ..|.++.|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~DPYv~v~~--~~~~~--~~kT~~v~~t~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 90 (124)
T cd04037 20 KSDPYLKIKL--GKKKI--NDRDNYIPNTLNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLED 90 (124)
T ss_pred CCCcEEEEEE--CCeec--cceeeEEECCCCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeecc
Confidence 4667888776 44432 12343333345688999999986 457789999999998765566799999998843
No 83
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.00 E-value=0.049 Score=50.81 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+-.++... ...+|....-+..+.|||.+.|++ .-.++ .++.|.|+|||....++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 36 LRNPYVKVYLLPDRSEK-SKRRTKTVKKTLNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCEEEEEEccCCCcc-ccccccccCCCCCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 46779999886544322 222455554456688999999994 44554 467899999998765667799999999865
No 84
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=95.99 E-value=0.092 Score=50.02 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred CCceEEEEEEEeCCc-ccccceeeccccCCCCccccccEEeccccc-CcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGA-PFGLPMRTRLESMGPMYCWNEPITLSTKYR-DLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~-~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~-dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.++-||.+.+-.+++ +-....+|..+.-+..+.|||.+.|++.-. ....++.|.|+|||....++...+|.+.++|
T Consensus 36 ~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 36 SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 467799888764432 112234555544445688999999997643 3346789999999987655667899998887
No 85
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=95.96 E-value=0.086 Score=49.35 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=56.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+..++... ..-.|..+.-...+.|||.+.|++.-.++. +..|.|+||+...- ++...+|.+.++|-+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~~~nP~wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 36 IPDPYVRLYLLPDKSKS-TRRKTSVKKDNLNPVFDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCceEEEEEEcCCCCC-ceEecccccCCCCCEECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 46779999987655422 233565544455688999999998877764 56899999997642 456799999999966
No 86
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.94 E-value=0.073 Score=50.22 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=54.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-i~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.++.||.+.+..+++. ..+|.-+.. .++.|||...|+ +.-.+|. +..|.|+||+...-++...+|.+.++|=+-
T Consensus 36 ~~d~yVk~~llp~~~~---~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 36 ASSWQVHLVLLPSKKQ---RAKTKVQRG-PNPVFNETFTFSRVEPEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred CCCcEEEEEEccCCcc---eeecccccC-CCCcccCEEEECCCCHHHhc-cCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 4677998776654432 235544444 678899999999 7777766 677999999987656677999999999654
No 87
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.88 E-value=0.035 Score=56.11 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=45.1
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCC---ceeEeEEEEeeeccccc-ccccceeEEeecC
Q 004173 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFNSKMQ-LKTGKQKLRLWPG 146 (770)
Q Consensus 81 ~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~---~~~vG~~~~~LFd~~~~-Lr~G~~~L~lwp~ 146 (770)
+.+.|+|.+.+.+. -+|..++.|.||++.+....+ ..++|.+-++|++ +|+ +..|.+.|.++..
T Consensus 70 k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 70 KNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 56889999988777 467888999999999875431 2799999999999 776 9999999999854
No 88
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.84 E-value=0.066 Score=49.75 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=56.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+..++.... ..+|..+.-+..+.|||.+.|++.-.+|. ...|.|.|||....++...+|.+.++|=+
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 35 RSNPYVKVYLLPDKSKQS-KRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcEEEEEEecCCCcCc-eeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 467799999986554322 33565554455688999999998877774 56899999997755566789999998843
No 89
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.84 E-value=0.076 Score=50.73 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||++.+ +|+ ..+|....-...+.|||.+.|++ ..++....|.|+|||.....+...||.+.++|=
T Consensus 47 ~~DPYVkV~~--~~~----~~kT~vi~~t~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 47 STDGYVKVFF--GGQ----EKRTEVIWNNNNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCeEEEEEE--CCc----cccCceecCCCCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 4677988865 554 33555444344688999999973 344678899999999876666778999988773
No 90
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.81 E-value=0.063 Score=50.50 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEeccccc--CcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR--DLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~--dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||++.+ +++ ..+|..+.-+..+.|||.+.|++.-. +-+.+..|.|+|||...-++...+|.+.++|=
T Consensus 19 ~~dpYv~v~l--~~~----~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~ 91 (126)
T cd08682 19 TNDAYVIIQL--GKE----KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91 (126)
T ss_pred CCCceEEEEE--CCe----eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHH
Confidence 4677999887 332 23555444445688999999987542 22567789999999865455678999999983
No 91
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.69 E-value=0.18 Score=47.08 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=57.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCC-CccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGP-MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~-~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.++.||++.+...+.+-.....|....-.. .+.|||-++|++. .|..+.|.|.|||.... +...+|++.++|
T Consensus 24 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l--- 96 (128)
T cd00275 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL--- 96 (128)
T ss_pred ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh---
Confidence 467799999875442111233454433333 6889999999988 45567899999998765 667899999988
Q ss_pred cccccccceeEEe
Q 004173 131 KMQLKTGKQKLRL 143 (770)
Q Consensus 131 ~~~Lr~G~~~L~l 143 (770)
..|..|...+.+
T Consensus 97 -~~l~~g~~~~~l 108 (128)
T cd00275 97 -DSLRQGYRHVPL 108 (128)
T ss_pred -HHhcCceEEEEe
Confidence 345666655443
No 92
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.67 E-value=0.068 Score=63.03 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=62.6
Q ss_pred CCCceEEEEEEEeCCccc-ccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
...|.||+|+|+ |-|- +...+|..+.-...+.|||.++|+|.+ |.=|.|.|+|||.........+|++++|+
T Consensus 477 ~~~dpyV~Vei~--G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~---PeLAllRf~V~d~D~~~~ddfigq~~lPv-- 549 (581)
T PLN02222 477 SPPDFYTRVGIA--GVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTV---PELALLRLEVHEYDMSEKDDFGGQTCLPV-- 549 (581)
T ss_pred CCCCeeEEEEEe--ccCCCcceeeeEecCCCCCcccCCeeEEEEEc---CceeEEEEEEEECCCCCCCcEEEEEEcch--
Confidence 467889999997 2121 122345444322347899999999864 66699999999975544566899999999
Q ss_pred ccccccccceeEEee
Q 004173 130 SKMQLKTGKQKLRLW 144 (770)
Q Consensus 130 ~~~~Lr~G~~~L~lw 144 (770)
..||+|...+.|.
T Consensus 550 --~~Lr~GyR~V~L~ 562 (581)
T PLN02222 550 --WELSQGIRAFPLH 562 (581)
T ss_pred --hhhhCccceEEcc
Confidence 4899999999885
No 93
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=95.58 E-value=0.08 Score=49.24 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||.+.+..++ ....+|....-+.++.|||.+.|++.-. ..+.|.|+|||.... +...+|.+.+++=
T Consensus 20 ~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 20 TPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 46779888874222 1233565544445689999999987542 456799999997655 5678999999994
No 94
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.53 E-value=0.11 Score=44.42 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=53.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (770)
..+.||++.+.. ....+|....-...+.|||.+.|++.-. ....|.|.||+.........+|.+.+++.+-.
T Consensus 19 ~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 19 KSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 567788888775 1233454444345678999999997665 67889999999877656789999999987644
No 95
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.49 E-value=0.083 Score=53.22 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=54.6
Q ss_pred CCCCccccccEEecccccCcCccCceEEEEEeecCCC-----CceeEeEEEEeeeccc-ccccccceeEEeecCCC
Q 004173 79 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-----DERLVGGTTILLFNSK-MQLKTGKQKLRLWPGKE 148 (770)
Q Consensus 79 ~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-----~~~~vG~~~~~LFd~~-~~Lr~G~~~L~lwp~~~ 148 (770)
..+.+.|+|-+.+.+.. ++..++.|.||+|.+.... .+.++|.+-+||++++ ..++.|.+.|.+.....
T Consensus 61 ~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~ 135 (178)
T cd08679 61 YHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDK 135 (178)
T ss_pred cCCCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecCC
Confidence 34568899999887744 4556899999999987433 3679999999999954 55788999999987543
No 96
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.37 E-value=0.049 Score=50.60 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=51.7
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
++-||.+.+-.+ ....+|....-...+.|||.+.|++. +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 24 ~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 24 VDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 566888877432 23345555554567899999999876 5678999999998766667899999999754
No 97
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=95.20 E-value=0.16 Score=49.88 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=50.6
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..+|-||.+.+ |++ ..+|....- +..+.|||.++|++. + |.++.|+|+|||.........+|.+.++|=+
T Consensus 19 g~sDPYV~v~l--~~~----~~kTk~~~~~t~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 19 RVPEVFVKAQL--GNQ----VLRTRPSQTRNGNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCCeEEEEEE--CCE----EeeeEeccCCCCCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 35777998887 443 224433322 356889999999874 2 5568999999998765556799999999875
No 98
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=95.19 E-value=0.16 Score=47.67 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCC--ceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD--ERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~--~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +|. ...+|....-+..+.|||.++|++.. +..|.|+|||....+. ...+|.+.+++=+
T Consensus 20 ~~dpyv~v~~--~~~---~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 20 LPDPFAVITV--DGG---QTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred CCCcEEEEEE--CCc---cceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHH
Confidence 4666888775 442 23355544444568899999999853 6799999999765432 4689999998865
Q ss_pred c
Q 004173 130 S 130 (770)
Q Consensus 130 ~ 130 (770)
-
T Consensus 90 l 90 (123)
T cd08382 90 V 90 (123)
T ss_pred c
Confidence 3
No 99
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.13 E-value=0.15 Score=47.85 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=48.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +++.. .+|....-..++.|||.+.|++.- .+..|.|+|||....+....||.+.++|=+
T Consensus 21 ~~DPYv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~ 89 (120)
T cd04045 21 KIDPYVRVLV--NGIVK---GRTVTISNTLNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSD 89 (120)
T ss_pred CcCCEEEEEE--CCEEe---eceeEECCCcCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHH
Confidence 4566888876 44322 234443445568999999998653 246899999998765566789999999644
No 100
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.12 E-value=0.17 Score=47.74 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=50.9
Q ss_pred CCceEEEEEEEeC--CcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYID--GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~--~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+... ++... ..+|....-+..+.|||.+.|++. +.+..|.|+|||....++...+|.+.+++=+
T Consensus 20 ~~Dpyv~v~~~~~~~~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 20 ASDPYVKISLYDPDGNGEID-SVQTKTIKKTLNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CcCcEEEEEEECCCCCCccc-ceeeeEEcCCCCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4667999988742 22222 235554443456889999999874 3357899999998765566789999999744
No 101
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.11 E-value=0.18 Score=47.16 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=51.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-i~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.++.||++.+..++... ...+|....-+..+.|||.+.|+ +.-.++ .+..|.|+|||.... +...+|.+.++|
T Consensus 35 ~~dpyv~v~~~~~~~~~-~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~-~~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 35 LSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYGITEEDI-QRKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCceEEEEEecCCCCC-CceeeeeecCCCCCCccceEEEcCCCHHHh-CCCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 46789999986554422 23466655545568899999996 333332 245899999998765 667899999988
No 102
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.11 E-value=0.075 Score=52.29 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=53.2
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||++.+ +|+. .+|+.+.-...+.|||-+.||+...++ +..|.|+|||.....+...+|.+.++|-+
T Consensus 34 ~~DPYV~V~~--~g~~----~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 34 LVDPYVEVSF--AGQK----VKTSVKKNSYNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CcCcEEEEEE--CCEe----eecceEcCCCCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 4577999874 5553 466655545568999999999876543 46899999998766567799999999875
No 103
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=95.10 E-value=0.076 Score=49.03 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=50.3
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
+|-||.+.+ +++. .+|....-...+.|||.+.|++. +...+..|.|.|||....+....+|.+.++|=.
T Consensus 26 ~DPYv~v~~--~~~~----~kT~v~~~t~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 26 MDPFVIISF--GRRV----FRTSWRRHTLNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred cCceEEEEE--CCEe----EeeeeecCCCCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHHH
Confidence 466888875 4332 25665554567889999999875 333456899999998766667889999999853
No 104
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.10 E-value=0.14 Score=46.51 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=48.9
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..++-||.+++ +|+ ...|+.+.-+..+.|||.+.|++.- |..+.|.|+|||... ...+|.+.++|-+
T Consensus 19 ~~~dpyv~v~~--~~~----~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 19 KEPSPYVELTV--GKT----TQKSKVKERTNNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCCcEEEEEE--CCE----EEeCccccCCCCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 34777888877 442 3355554445568899999999853 566789999999654 4579999999854
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=95.03 E-value=0.15 Score=60.31 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=61.4
Q ss_pred CCCceEEEEEEEeCCccc-ccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..+|.||+++++ |-|. +...+|..+.-...+.|||.++|+|.. |.-|.|.|.|||.........+|++++|+
T Consensus 495 ~~~D~yV~V~i~--G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv-- 567 (599)
T PLN02952 495 SPPDFYTKMYIV--GVPADNAKKKTKIIEDNWYPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPV-- 567 (599)
T ss_pred CCCCceEEEEEe--ccCCCCcceeeeeccCCCCcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcch--
Confidence 456899999988 2221 122345433222347799999999885 66699999999976555567899999999
Q ss_pred ccccccccceeEEee
Q 004173 130 SKMQLKTGKQKLRLW 144 (770)
Q Consensus 130 ~~~~Lr~G~~~L~lw 144 (770)
..||+|...+.|.
T Consensus 568 --~~Lr~GyR~VpL~ 580 (599)
T PLN02952 568 --SELRPGIRSVPLH 580 (599)
T ss_pred --hHhcCCceeEeCc
Confidence 4899999887764
No 106
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=95.02 E-value=0.14 Score=47.81 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=50.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccc-cCCCCccccccEEecccccCc-CccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLE-SMGPMYCWNEPITLSTKYRDL-TAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~-~~~~~~~Wnewl~fpi~~~dL-P~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..+-||.+.+.. ....+|... .-...+.|||.+.|++.-..| ...+.|.|.|||....++...+|++.++|=+
T Consensus 20 ~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 20 KMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 467788877642 112244332 223568899999998865544 4578899999997654456789999999865
No 107
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=95.02 E-value=0.18 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||.+.+ +|+.. .+|....-+..+.|||.+.|++. + .+..|.|+|||.....+...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~--~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~--~~~~l~~~v~D~d~~~~~~~iG~~~~~l~ 87 (121)
T cd04042 20 TSDPYVKFKY--GGKTV---YKSKTIYKNLNPVWDEKFTLPIE--D--VTQPLYIKVFDYDRGLTDDFMGSAFVDLS 87 (121)
T ss_pred CCCCeEEEEE--CCEEE---EEeeeccCCCCCccceeEEEEec--C--CCCeEEEEEEeCCCCCCCcceEEEEEEHH
Confidence 3566888764 44322 23333333446889999999874 3 25789999999876656779999999983
No 108
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.98 E-value=0.13 Score=48.52 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~-~~~~vG~~~~~L 127 (770)
.+|-||.+.+ +++ ..+|+.+.-+.++.|||.+.|++.-..-..+..|.|+|||..... +...+|.+.+++
T Consensus 20 ~~dpyv~v~~--~~~----~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l 90 (127)
T cd04022 20 SSSAYVELDF--DGQ----KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISG 90 (127)
T ss_pred CcCcEEEEEE--CCE----EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcH
Confidence 4667877754 443 234554443456889999999976444334678999999975543 566899999988
No 109
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.95 E-value=0.21 Score=48.11 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=50.2
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +++. .+|..+.-+.++.|||.+.|++. + +.+..|.|.|||.....+...+|.++++|=+
T Consensus 35 ~~DPYv~v~~--~~~~----~kT~vi~~t~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 35 KSDPYCEVSM--GSQE----HKTKVVSDTLNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CcCcEEEEEE--CCEe----eeccccCCCCCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4677888775 4432 35555444556899999999874 3 4467999999998755556799999999954
No 110
>PLN02223 phosphoinositide phospholipase C
Probab=94.89 E-value=0.15 Score=59.31 Aligned_cols=85 Identities=22% Similarity=0.446 Sum_probs=60.9
Q ss_pred CCCceEEEEEEEeCCccc-ccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
..+|.||+++|+ |-|- +.-.+|....=.-.+.|||..+|+|.. |--|.|.|.|||.....+...+|.+++|+
T Consensus 433 s~~DpyV~VeI~--Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv-- 505 (537)
T PLN02223 433 SKPDLYVRISIA--GVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV-- 505 (537)
T ss_pred CCCCeEEEEEEe--eccCCcceeEEEeCCCCcCceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch--
Confidence 357889999997 2221 112234321111237799999999864 77899999999987655567899999998
Q ss_pred ccccccccceeEEee
Q 004173 130 SKMQLKTGKQKLRLW 144 (770)
Q Consensus 130 ~~~~Lr~G~~~L~lw 144 (770)
..||+|...+.|.
T Consensus 506 --~~Lr~GyR~VpL~ 518 (537)
T PLN02223 506 --SELIEGIRAVPLY 518 (537)
T ss_pred --HHhcCCceeEecc
Confidence 5899999988775
No 111
>PLN02230 phosphoinositide phospholipase C 4
Probab=94.80 E-value=0.15 Score=60.34 Aligned_cols=85 Identities=16% Similarity=0.316 Sum_probs=62.1
Q ss_pred CCCceEEEEEEEeCCccc-ccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
...|.||+|+|+- .|- +...+|....=.-.+.|||-.+||+. +|.=|.|.|.|||.....+...+|++++|+-
T Consensus 494 s~~DpyV~Vei~G--vp~D~~~~kT~v~~n~~nP~Wneef~F~l~---vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~- 567 (598)
T PLN02230 494 SPPDFFVRVGIAG--APVDEVMEKTKIEYDTWTPIWNKEFIFPLA---VPELALLRVEVHEHDINEKDDFGGQTCLPVS- 567 (598)
T ss_pred CCCCceEEEEEEE--CCCCCcccceeccCCCCCCccCCeeEEEEE---cCceeEEEEEEEECCCCCCCCEEEEEEcchH-
Confidence 3578899999983 221 11224432111224779999999987 4778999999999766556678999999994
Q ss_pred ccccccccceeEEee
Q 004173 130 SKMQLKTGKQKLRLW 144 (770)
Q Consensus 130 ~~~~Lr~G~~~L~lw 144 (770)
.||+|...+.|.
T Consensus 568 ---~Lr~GyR~V~L~ 579 (598)
T PLN02230 568 ---EIRQGIHAVPLF 579 (598)
T ss_pred ---HhhCccceEecc
Confidence 899999998875
No 112
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.038 Score=74.40 Aligned_cols=141 Identities=20% Similarity=0.263 Sum_probs=116.3
Q ss_pred EEEEEEecCcceecccCcceeEEEEEeCCCCeE--EEEEeeCcchhHHHHHHHHHHHHHHHHHhc----CCCceeeeeEE
Q 004173 531 ILITGIVPSESSIFKSALHPLRLTFRTASGGTC--KMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNV 604 (770)
Q Consensus 531 ~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~--~~IfK~GDDLRQD~lvlQli~lmd~i~~~~----~ldl~l~~Y~V 604 (770)
+.|..+.|.--.|.+..++-.++..++.||+.| .+-.|+-=+=|-+.+|+|+++++|..+.+. ...+.+..-.+
T Consensus 3192 v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ 3271 (3550)
T KOG0889|consen 3192 VKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIV 3271 (3550)
T ss_pred hhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCcee
Confidence 344555666667777888999999999999988 555666567799999999999999999986 46788999999
Q ss_pred EEecCCCCccceec-cccHHHHHhcc----C----------------------------------------------cHH
Q 004173 605 LATGQDEGLLEFIP-SRSLAQILSEH----R----------------------------------------------SII 633 (770)
Q Consensus 605 l~t~~~~GlIE~V~-s~tl~~I~~~~----~----------------------------------------------~l~ 633 (770)
+|.|+..-++|-.| +.|+++|.+++ + .+.
T Consensus 3272 ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~ 3351 (3550)
T KOG0889|consen 3272 IPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILK 3351 (3550)
T ss_pred eeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 99999999999999 89999998751 0 245
Q ss_pred HHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC
Q 004173 634 SYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD 675 (770)
Q Consensus 634 ~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD 675 (770)
+|+.+.|+.... ++ --+.+|+..+|..+.++|.+.+|-
T Consensus 3352 dy~~~tf~~~~d---~w-~frk~f~~qla~~~~~~~~lni~~ 3389 (3550)
T KOG0889|consen 3352 DYFYKTFTNYSD---FW-TFRKQFTDQLAVFSFMEYMLNING 3389 (3550)
T ss_pred HHHHHhcCChhh---hh-hhHhHHHHHHHHHHHHHHHHhcCC
Confidence 788888877543 12 358999999999999999999998
No 113
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=94.74 E-value=0.22 Score=49.44 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=52.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+..++... ...+|..+.-+.++.|||.+.|++ ...++ .+..|.|+|||...-++...+|.+.+++
T Consensus 47 ~~DPYVkv~l~~~~~~~-~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l 121 (162)
T cd04020 47 TSDSFVKCYLLPDKSKK-SKQKTPVVKKSVNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGL 121 (162)
T ss_pred CCCCEEEEEEEcCCCCC-cceeCCccCCCCCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence 46679999987554332 123454433344688999999984 45666 3568999999977655677899999887
No 114
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.67 E-value=0.28 Score=45.15 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +++. .+|....-+..+.|||.+.|++.- +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 20 ~~dPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 20 LSDPYVKFRL--GNEK----YKSKVCSKTLNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCcEEEEEE--CCEe----EecccccCCCCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 3566888876 4432 345544445568899999998752 2478999999998765567899999999844
No 115
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=94.58 E-value=0.4 Score=45.23 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=51.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
..+-||++.+-..+.. ...-+|....-...+.|||.+.|++.-.+ .+..|.|+|||.....+...+|.+.++|
T Consensus 33 ~~dpyv~v~~~~~~~~-~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l 105 (131)
T cd04026 33 LSDPYVKLKLIPDPKN-ETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGV 105 (131)
T ss_pred CCCCcEEEEEEcCCCC-CceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeH
Confidence 3577899888643321 12234544444456899999999976444 3578999999976555667999999997
No 116
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.46 E-value=0.32 Score=44.63 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=50.0
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
++-||.+.+ +|+. .-+|..+.-...+.|||.+.|++.-. .+..|.|.|||....++...+|.+.+++=+
T Consensus 20 ~dpyv~v~~--~~~~---~~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 20 SDPFVKFYL--NGEK---VFKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCeEEEEE--CCCc---ceeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 566888876 3322 23555544455689999999987532 567899999998766566789999999865
No 117
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=94.45 E-value=0.27 Score=45.85 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=49.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ ++.. .+|....-+..+.|||.+.|++.-. .++.|.|+|||....++...+|.+.++|=+
T Consensus 20 ~~DPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 20 TSDPFVRVFY--NGQT----LETSVVKKSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred CcCceEEEEE--CCEE----EeceeecCCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 3566887765 4432 2454444345688999999997653 378899999997665566789999999843
No 118
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.44 E-value=0.31 Score=45.76 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+ ++. +.+|....-...+.|||.+.|++.-.. ..+..|.|+|||.....+...+|.+.++|
T Consensus 14 ~~Dpyv~v~~--~~~----~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 14 KGDRIAKVTF--RGV----KKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred CCCCEEEEEE--CCE----eeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 3556887775 443 345555443456889999999975433 46788999999987655566888887765
No 119
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=94.41 E-value=0.35 Score=46.14 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=49.1
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCC------CCceeEeEEE
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG------KDERLVGGTT 124 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~------~~~~~vG~~~ 124 (770)
..+|-||.+.+ |++. .+|+-..-+.++.|||...|++.- .++.|.|+|||...- .+...+|-+.
T Consensus 22 g~sDPYv~i~~--g~~~----~rTk~~~~~~nP~WnE~f~f~v~~----~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~ 91 (126)
T cd08379 22 GSTDAYCVAKY--GPKW----VRTRTVEDSSNPRWNEQYTWPVYD----PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVR 91 (126)
T ss_pred CCCCeeEEEEE--CCEE----eEcCcccCCCCCcceeEEEEEecC----CCCEEEEEEEECCCccccccCCCCceEEEEE
Confidence 35777999985 5553 356555545678999999999852 235899999997653 2567899999
Q ss_pred Eeee
Q 004173 125 ILLF 128 (770)
Q Consensus 125 ~~LF 128 (770)
++|=
T Consensus 92 i~l~ 95 (126)
T cd08379 92 IRLS 95 (126)
T ss_pred EEHH
Confidence 9864
No 120
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=94.34 E-value=0.2 Score=50.97 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.3
Q ss_pred CCCCccccccEEecccccCcCccCceEEEEEeecCC---------CCceeEeEEEEeeecccccccccceeEEeec
Q 004173 79 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------KDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (770)
Q Consensus 79 ~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~---------~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lwp 145 (770)
..+.+.|+|-|.+.+.. +|....-|-||+|.++.. ..+.++|-+-+||+...++|..|.+.|.+-.
T Consensus 65 h~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~ 139 (185)
T cd08697 65 HNQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVAN 139 (185)
T ss_pred cCCCCccceeEEEecCC-cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEe
Confidence 34568899988876665 456788999999998721 1246899999999998899999999999864
No 121
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=94.26 E-value=0.37 Score=45.52 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.+|-||.+.+ ++... .+|..+. +..+.|||.+.|++.-.++ ..+.|.|||-....+...||.+.++|-+-
T Consensus 21 ~~DPYv~v~l--~~~~~---~kT~v~~-~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 21 VPHPYCVISL--NEVKV---ARTKVRE-GPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCCeeEEEEE--CCEeE---EEeecCC-CCCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhHc
Confidence 3577998888 44332 2344333 4568899999998533222 46889999976656678999999998753
No 122
>PLN02228 Phosphoinositide phospholipase C
Probab=94.21 E-value=0.3 Score=57.59 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=61.2
Q ss_pred CCCceEEEEEEEeCCcccc-cceeeccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 51 RRPELYVECALYIDGAPFG-LPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~-~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
...|.||+++|+- -|.. ...+|....-...+.| ||.++|++. +|.=|.|.|+|+|.........+|+.++|+
T Consensus 456 ~~~DpyV~Vei~G--~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv- 529 (567)
T PLN02228 456 SPPDFFVKIGIAG--VPRDTVSYRTETAVDQWFPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPL- 529 (567)
T ss_pred CCCCcEEEEEEEe--cCCCCCcceeeccCCCCCceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcch-
Confidence 3478899999972 2211 1124433211124789 999999986 477799999999976544566889999999
Q ss_pred cccccccccceeEEee
Q 004173 129 NSKMQLKTGKQKLRLW 144 (770)
Q Consensus 129 d~~~~Lr~G~~~L~lw 144 (770)
..||+|...+.|.
T Consensus 530 ---~~Lr~GYR~VpL~ 542 (567)
T PLN02228 530 ---PELKSGVRAVRLH 542 (567)
T ss_pred ---hHhhCCeeEEEcc
Confidence 4899999999884
No 123
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=94.17 E-value=0.2 Score=47.32 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=48.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+ +|+ ...+|....-...+.|||.+.|++. ....|.|+|||....+....+|.+.++|
T Consensus 21 ~~dPyv~v~~--~~~---~~~kT~v~~~t~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l 86 (125)
T cd04021 21 KPDPYVEVTV--DGQ---PPKKTEVSKKTSNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDL 86 (125)
T ss_pred CCCeEEEEEE--CCc---ccEEeeeeCCCCCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEH
Confidence 3566888776 454 2334544444456889999999864 4578999999987666678999999997
No 124
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=94.13 E-value=0.18 Score=47.75 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=48.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +++.. -+|+.+.-+..+.|||-++|++. ..+.|.|.||+-........+|.+.++|=+
T Consensus 34 ~~dpyv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 34 LLDPYVSIDV--DDTHI---GKTSTKPKTNSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred CcCcEEEEEE--CCEEE---eEEeEcCCCCCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 4677988876 45432 13333333456889999999985 568999999986544455689999999843
No 125
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.11 E-value=0.21 Score=45.84 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccC-cCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD-LTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~d-LP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+- ++ ..+|..+.-+..+.|||.+.|++.... -..++.|.|+|||....++...+|.++++|=+
T Consensus 20 ~~dpyv~v~~~--~~----~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 20 NIDPVVKVEVG--GQ----KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCEEEEEEC--CE----eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 35668887764 43 234554443456889999999976533 22367899999997765556789999999864
No 126
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=94.09 E-value=0.54 Score=46.57 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEeccccc------CcCccCceEEEEEeecCC-CCceeEeEE
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------DLTAHSQLALTVWDVSCG-KDERLVGGT 123 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~------dLP~~a~L~~ti~~~~~~-~~~~~vG~~ 123 (770)
..+|-||...+...+.. ....+|+.+.-+.++.|||-.+|+|.-. .+++.+ |.|+||+..+- .+...+|.+
T Consensus 23 ~~~DpYVk~~l~~p~~~-~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 23 KDLDTYVKFEFPYPNEE-PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCeEEEEEEecCCCC-CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEEE
Confidence 35788999997544321 1234676666667789999999998655 477655 99999997642 356789999
Q ss_pred EEeeec
Q 004173 124 TILLFN 129 (770)
Q Consensus 124 ~~~LFd 129 (770)
.++|=+
T Consensus 101 ~i~L~~ 106 (155)
T cd08690 101 QVKLEP 106 (155)
T ss_pred EEEccc
Confidence 888844
No 127
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=93.87 E-value=0.19 Score=46.89 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCceEEEEEEEeCC-cccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecC----CCCceeEeEEEEe
Q 004173 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----GKDERLVGGTTIL 126 (770)
Q Consensus 52 ~~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~----~~~~~~vG~~~~~ 126 (770)
.+|-||.+.+..+. .......+|..+.-...+.|||.+.|++.. +....|.|.|||... .++...+|.+.++
T Consensus 20 ~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 20 KSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 35668888877543 112233467666555678899999999654 445689999999875 4566789999999
Q ss_pred eec
Q 004173 127 LFN 129 (770)
Q Consensus 127 LFd 129 (770)
+=+
T Consensus 97 l~~ 99 (120)
T cd04048 97 LGE 99 (120)
T ss_pred HHH
Confidence 865
No 128
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=93.83 E-value=0.45 Score=44.39 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=49.0
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
+|-||.+.+ ++.. .+|+...-+..+.|||.+.|++.- +.+..|.|+|||....++...+|.++++|=+
T Consensus 24 ~dPyv~v~~--~~~~----~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 24 SDPYAILSV--GAQR----FKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCeEEEEE--CCEE----EecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 455776654 4432 355544445568899999998754 5678999999997765566789999999854
No 129
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=93.81 E-value=0.22 Score=46.84 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ ++. . ...+|..+.-...+.|||-+.|++. +.+..|.|.|||....++...+|.+.++|=+
T Consensus 17 ~~dpyv~v~~--~~~-~-~~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 17 SSNPYCVLEM--DEP-P-QKYQSSTQKNTSNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CcCCEEEEEE--CCC-C-cEEEeEEEecCCCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 4667888886 221 1 2235555444456889999999974 3467899999998876667899999999854
No 130
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=93.76 E-value=0.52 Score=44.04 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|.||.+.+ ++.. ....+|....-+..+.|||-+.|++.-. ....|.|+|||....++...+|.+.++|
T Consensus 21 ~~Dpyv~v~~--~~~~-~~~~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 21 LSDPYVTLVD--TNGK-RRIAKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCceEEEEE--CCCC-eeeecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 4566887753 2211 0122444433345688999999997553 4678999999987655677899999987
No 131
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=93.43 E-value=0.55 Score=43.34 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=46.9
Q ss_pred CCceEEEEEEEeCCcccccceeecccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ +++ ..+|.... -...+.|||-++|++.. +.+..|.|+|||....+ ...+|.+.+++=+
T Consensus 21 ~~dpyv~v~~--~~~----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 21 KQDPYCVLRI--GGV----TKKTKTDFRGGQHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCceEEEEE--CCC----ccccccccCCCCCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 3566888875 331 12343321 12368899999999865 35678999999976543 6789999999854
No 132
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=93.31 E-value=0.71 Score=43.10 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=50.6
Q ss_pred CCceEEEEEEEeCCcccccceeecccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.++-||.+.+ ++.. ..|+... -...+.|||-+.|++.-.+...+..|.|.|||.....+...+|.+.++|=+
T Consensus 21 ~~dpyv~v~~--~~~~----~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 21 KIDPYVIIQC--RTQE----RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred CcCceEEEEE--CCEe----eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 3566888875 3332 2333322 134688999999998776655678899999997655556789999999844
No 133
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=93.24 E-value=0.3 Score=47.70 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=48.8
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+ |++ +.+|+...-+..+.|||-++|++.- | ...|.|+|||.........+|.+.+++
T Consensus 21 ~sDPYV~v~~--g~~----~~kT~vvk~t~nP~WnE~f~f~i~~---~-~~~l~~~V~D~d~~~~dd~iG~a~i~l 86 (145)
T cd04038 21 SSDPYVVLTL--GNQ----KVKTRVIKKNLNPVWNEELTLSVPN---P-MAPLKLEVFDKDTFSKDDSMGEAEIDL 86 (145)
T ss_pred CcCcEEEEEE--CCE----EEEeeeEcCCCCCeecccEEEEecC---C-CCEEEEEEEECCCCCCCCEEEEEEEEH
Confidence 4677888876 443 3456655445568999999999752 2 778999999987655667899999877
No 134
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=93.18 E-value=0.3 Score=47.92 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=51.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccc--------cCcC----ccCceEEEEEeecCCCCcee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKY--------RDLT----AHSQLALTVWDVSCGKDERL 119 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~--------~dLP----~~a~L~~ti~~~~~~~~~~~ 119 (770)
.+|-||.+.+..+.+.- ...+|+-+.-+..+.|||.+.|++.. -++| ....|.|+||+.........
T Consensus 18 ~sDPYV~V~l~~~~~k~-~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 18 TCDPYASVTLIYSNKKQ-DTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCceEEEEEeCCcccC-cccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 46779999887543321 12245444434568899999999852 1233 24679999999876556679
Q ss_pred EeEEEEeeec
Q 004173 120 VGGTTILLFN 129 (770)
Q Consensus 120 vG~~~~~LFd 129 (770)
+|.+.++|=+
T Consensus 97 LG~v~i~l~~ 106 (148)
T cd04010 97 LGEVRIPLRG 106 (148)
T ss_pred eEEEEEeccc
Confidence 9999999744
No 135
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=93.15 E-value=0.66 Score=43.58 Aligned_cols=67 Identities=22% Similarity=0.309 Sum_probs=47.1
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
+|-||.+.+ +++ ..+|.-..-+.++.|||.+.|++. + +.+..|.|+|||.... +...+|.++++|=+
T Consensus 17 ~Dpyv~v~l--~~~----~~kT~v~~~t~nP~Wne~F~f~~~--~-~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 17 NDPVVEVKL--GNY----KGSTKAIERTSNPEWNQVFAFSKD--R-LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred CCCEEEEEE--CCc----cccccccCCCCCCccceEEEEEcC--C-CcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 566888886 332 334544333456889999999853 2 3678899999997643 55689999988754
No 136
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.97 E-value=0.26 Score=50.22 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=55.1
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEeeeccc-ccccccceeEEeecCC
Q 004173 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFNSK-MQLKTGKQKLRLWPGK 147 (770)
Q Consensus 80 ~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd~~-~~Lr~G~~~L~lwp~~ 147 (770)
.+.+.|||.|.+.|...+.+ .+-|.|+++-++.. +++.|||-+=++|++.+ -+|+.|.+.|.+|...
T Consensus 63 ~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d 132 (189)
T cd08695 63 NNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCD 132 (189)
T ss_pred CCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecc
Confidence 45678999999999987765 67999999987643 23479999999999985 6899999999999643
No 137
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=92.93 E-value=0.35 Score=44.10 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCceEEEEEEEeCC-cccccceeeccccCCCCccccccEEecccccCcC---ccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLT---AHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP---~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
.+|-||.+.+..++ +.. ...+|....-...+.|| +|.+.+.+|. .+..|.|.|||....++...+|.+++++
T Consensus 20 ~~DPyv~v~~~~~~~~~~-~~~kT~vi~~t~nP~Wn---~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 20 KSDPFLEISRQSEDGTWV-LVYRTEVIKNTLNPVWK---PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCeeEEEEEECCCCCEE-EEEeeeEeccCCCCceE---EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 46778888765332 222 23355555445568899 3555555554 3689999999988766678999999988
Q ss_pred ec
Q 004173 128 FN 129 (770)
Q Consensus 128 Fd 129 (770)
=+
T Consensus 96 ~~ 97 (110)
T cd04047 96 DE 97 (110)
T ss_pred HH
Confidence 54
No 138
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=92.92 E-value=0.93 Score=41.74 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=47.7
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ ++.. .+|....-+.++.|||.+.|++. ++ ...|.|+|||.....+...+|.+.+++-+
T Consensus 21 ~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 21 KSDPFCVLEL--VNAR----LQTHTIYKTLNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCCcEEEEEE--CCEe----eecceecCCcCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 3566888876 3322 34544333456889999999864 32 57899999997654566799999999855
No 139
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.88 E-value=0.32 Score=46.92 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCc--------------------CccCceEEEEEe
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDL--------------------TAHSQLALTVWD 110 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dL--------------------P~~a~L~~ti~~ 110 (770)
..+|+||.+.|-.. +.-..-+.+-|.+......||+.+.||+.|... =..+.|.++|||
T Consensus 23 ~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 23 KMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred cccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 35999999988754 233334455666666568899999999888321 245789999998
Q ss_pred ecCCCCceeEeEEEEeee
Q 004173 111 VSCGKDERLVGGTTILLF 128 (770)
Q Consensus 111 ~~~~~~~~~vG~~~~~LF 128 (770)
...-.....+|.+.++|=
T Consensus 102 ~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 102 NDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CcccCCCCcceEEEEEhh
Confidence 775445557888877763
No 140
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.68 E-value=0.41 Score=44.11 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=47.5
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
++-||.+.+ +++. ..+|+.+.-...+.|||.+.|++. + +.+..|.|+|||-..- +...+|.+.++|=
T Consensus 13 ~dPYv~v~v--~~~~---~~kT~v~~~t~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 13 LSPYAELYL--NGKL---VYTTRVKKKTNNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLN 79 (111)
T ss_pred CCceEEEEE--CCEE---EEEEeeeccCCCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence 566888887 4432 224444333456889999999874 2 2567799999997654 5678999999973
No 141
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=92.61 E-value=0.44 Score=45.08 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCceEEEEEEEeCCcccccceeeccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
.+|-||.+.+ |++. .+|+...- ..++.|||.+.|++.- -...|.|+|||-..-++..++|.+.++|=+
T Consensus 21 ~sDPYv~i~l--g~~~----~kT~v~~~~~~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~- 89 (121)
T cd04016 21 RMDPYCRIRV--GHAV----YETPTAYNGAKNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIPE- 89 (121)
T ss_pred CCCceEEEEE--CCEE----EEeEEccCCCCCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECch-
Confidence 4777999988 4432 24443322 3468899999999742 135699999997765566799999999852
Q ss_pred cccccccceeEEeec
Q 004173 131 KMQLKTGKQKLRLWP 145 (770)
Q Consensus 131 ~~~Lr~G~~~L~lwp 145 (770)
.+..|.. ...|-
T Consensus 90 --~~~~g~~-~~~W~ 101 (121)
T cd04016 90 --SVFNGET-LDDWY 101 (121)
T ss_pred --hccCCCC-ccccE
Confidence 2344532 35553
No 142
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=92.57 E-value=0.45 Score=43.88 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=48.9
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+.+ ++ ...+|....-+..+.|||.+.|++.- +.+..|.|+|||.... +...+|.+.++|-+
T Consensus 27 ~~dPyv~v~~--~~----~~~kT~~~~~t~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 27 KSDPYVIVRV--GA----QTFKSKVIKENLNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred CcCCEEEEEE--CC----EeEEccccCCCCCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHH
Confidence 4566888876 33 23355554445568899999988632 3578999999997655 56789999999855
No 143
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.53 E-value=0.41 Score=57.27 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=70.3
Q ss_pred eEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCccc-ccceeeccccC-CCCccccccEEecccc
Q 004173 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPF-GLPMRTRLESM-GPMYCWNEPITLSTKY 95 (770)
Q Consensus 18 ~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~-~~~~~Wnewl~fpi~~ 95 (770)
++|||.+=+|..+.... +.......++++|++ + |-|. |.--+|.++.- .-.+.|+|.++|++.+
T Consensus 618 L~IkI~sGq~~~~~~~~----------~~~~~~~dP~v~VeI---~-Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~v 683 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGK----------TKFGEISDPDVYVEI---A-GVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSV 683 (746)
T ss_pred eEEEEEecCcccCCCCC----------CcccccCCCCEEEEE---c-ccccchhhhhceeeccCCcCcccCCeEEEEEec
Confidence 66666665554332110 112233457777772 2 3332 22234553321 1236799999999988
Q ss_pred cCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEee
Q 004173 96 RDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLW 144 (770)
Q Consensus 96 ~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lw 144 (770)
.+| |.|.|.|+|....++.-.+|-+++|+ ..|++|...+++.
T Consensus 684 PEL---AliRF~V~d~d~~~~ddF~GQ~tlP~----~~L~~GyRhVpL~ 725 (746)
T KOG0169|consen 684 PEL---ALIRFEVHDYDYIGKDDFIGQTTLPV----SELRQGYRHVPLL 725 (746)
T ss_pred cce---eEEEEEEEecCCCCcccccceeeccH----HHhhCceeeeeec
Confidence 776 88999999988777778899999998 5899999999875
No 144
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.37 E-value=0.48 Score=45.59 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEeccccc------------CcCccCceEEEEEeecCCCCcee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------------DLTAHSQLALTVWDVSCGKDERL 119 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~------------dLP~~a~L~~ti~~~~~~~~~~~ 119 (770)
.++-||++.+-...+. ..-+|+.+.-+..+.|||-+.|++.-. +-.....|.|+|||.....+...
T Consensus 18 ~~dPyv~v~~~~~~~~--~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 18 TCDPFARVTLNYSSKT--DTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCcEEEEEEecCCcC--CeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 4677998877532111 123455544455688999999997654 34467789999999876556788
Q ss_pred EeEEEEeee
Q 004173 120 VGGTTILLF 128 (770)
Q Consensus 120 vG~~~~~LF 128 (770)
+|.+.++|=
T Consensus 96 IG~~~i~l~ 104 (137)
T cd08675 96 LGEVRIPLQ 104 (137)
T ss_pred EEEEEEehh
Confidence 999999853
No 145
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=92.24 E-value=0.97 Score=42.75 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=45.2
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeec-------CCCCceeEeEEEE
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS-------CGKDERLVGGTTI 125 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~-------~~~~~~~vG~~~~ 125 (770)
+|-||+..+-.+++.- ....|.-..-+..+.|||-.+|+|. ..-.|.|++||.. ..+....+|.+.+
T Consensus 15 sDPYV~l~v~~~~~~~-~~~KTk~i~~TlnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 15 ANLYCTLEVDSFGYFV-KKAKTRVCRDTTEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCEEEEEEcCccccc-eeeeeeeecCCCCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 5669888765544321 2334544433456889999999875 2448999999974 2234567888877
Q ss_pred ee
Q 004173 126 LL 127 (770)
Q Consensus 126 ~L 127 (770)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 76
No 146
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=92.20 E-value=0.96 Score=44.65 Aligned_cols=50 Identities=26% Similarity=0.508 Sum_probs=38.2
Q ss_pred eeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 73 RTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 73 ~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
+|..+.-+..+.|||.+.|++. ++ .+..|.|+|||.. ...+|.+.+++=+
T Consensus 92 kT~v~~~tlnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 92 VTEVKPQTLNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred ecceecCCCCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 4555544556899999999973 33 4688999999975 5689999999844
No 147
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=92.15 E-value=1.2 Score=41.52 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||.+.+ +++.+ -+|....-+.++.|||-..|++.- -...|.|.|||...-++...+|.+.+++-
T Consensus 20 ~~DPYv~v~~--~~~~~---~kT~v~~~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 20 SSDPYCIVKV--DNEVI---IRTATVWKTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCCceEEEEE--CCEee---eeeeeEcCCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 3566888765 45443 245444445568899999998742 23789999999775556678999999864
No 148
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=92.10 E-value=0.57 Score=46.26 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=47.7
Q ss_pred CCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
...+|-||++++ ++... .+|.-..-..++.|||...|++. ...+.|.|+|||-..- +...||.+++++
T Consensus 55 ~g~sDPYv~V~l--~~~~~---~rT~v~~~~~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l 122 (158)
T cd04015 55 KITSDPYATVDL--AGARV---ARTRVIENSENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPV 122 (158)
T ss_pred CCCcCeEEEEEE--CCeEe---eEEEEeCCCCCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEh
Confidence 345789999987 44433 24544433456889999999874 2346899999996543 346899999998
No 149
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.95 E-value=0.6 Score=53.50 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=58.6
Q ss_pred cCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEe
Q 004173 49 EERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTIL 126 (770)
Q Consensus 49 ~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~ 126 (770)
....+|-||++.+.++++.+.. ..|+.+.-..++.|||.+.|.|.-.+|-. +.|.|+|||...-+....||+..+.
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~k-kkT~~~~~~~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSK-KKTSVKKKTLNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCILG 390 (421)
T ss_pred CCCCCCccEEEEEecCCceeee-eeeecccCCCCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEec
Confidence 3345678999999999977744 35665555566789999999999889987 8999999998876555578855443
No 150
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=91.64 E-value=0.9 Score=44.53 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=57.7
Q ss_pred CceEEEEEEEe-CCcccccceeeccccC--CCCccccccEEecccccCcCccCceEEEEEeecCCCCce-eEeEEEEeee
Q 004173 53 PELYVECALYI-DGAPFGLPMRTRLESM--GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDER-LVGGTTILLF 128 (770)
Q Consensus 53 ~~l~V~~~l~~-~~~~l~~p~~T~~~~~--~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~-~vG~~~~~LF 128 (770)
.+=+++++|.+ +|++++.+-.|+...- .+...||..+.+...+.+||.+|.+.|.+-.+...++.. .-+|+-+.+
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~- 109 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL- 109 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG-
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh-
Confidence 45589999995 8888988877766422 234668999999999999999999999999987655544 457776666
Q ss_pred cccccccccceeEEeec
Q 004173 129 NSKMQLKTGKQKLRLWP 145 (770)
Q Consensus 129 d~~~~Lr~G~~~L~lwp 145 (770)
..++.|...+.+|.
T Consensus 110 ---dei~~g~~~lely~ 123 (147)
T PF14186_consen 110 ---DEIKPGPVVLELYK 123 (147)
T ss_dssp ---GG--SEEEEE--EE
T ss_pred ---hhccCCceeeehhc
Confidence 78899999999984
No 151
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=91.24 E-value=0.88 Score=44.00 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeCCccc-------ccceeeccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCC---ceeE
Q 004173 52 RPELYVECALYIDGAPF-------GLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLV 120 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l-------~~p~~T~~~~~~~~~~W-newl~fpi~~~dLP~~a~L~~ti~~~~~~~~---~~~v 120 (770)
.+|=||.+.+..+++.+ ...-+|..+.-.-++.| ||-+.|++.. +..|.|+|||....+. ...+
T Consensus 20 ~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 20 NPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceE
Confidence 46669999987655542 12345655544456889 9999999853 4479999999654322 4689
Q ss_pred eEEEEeeec
Q 004173 121 GGTTILLFN 129 (770)
Q Consensus 121 G~~~~~LFd 129 (770)
|.+.++|=+
T Consensus 95 G~~~i~l~~ 103 (137)
T cd08691 95 GKLSIPVQR 103 (137)
T ss_pred EEEEEEHHH
Confidence 999998743
No 152
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=90.58 E-value=2 Score=40.36 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=47.0
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.+|-||.+. .+++ ...|+...-...+.|||-+.|.+. + .+..|.|+|||.... ....+|.+++++-.
T Consensus 23 ~~dPyv~v~--~~~~----~~kT~v~~~t~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 23 GADPYVIIK--CEGE----SVRSPVQKDTLSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred CcCccEEEE--ECCE----EEEeCccCCCCCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 355677774 3454 346665554556899999988754 2 367899999996543 35789999999843
No 153
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=90.39 E-value=1.4 Score=42.09 Aligned_cols=69 Identities=6% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecc-ccc----CcCc-cCceEEEEEeecCCCCceeEeEEEE
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYR----DLTA-HSQLALTVWDVSCGKDERLVGGTTI 125 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi-~~~----dLP~-~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (770)
.+|-||.+.+. +. ..+|..+.-+.++.|||.+.|++ .+. ++.. ...|.|+|||....++...+|.+.+
T Consensus 21 ~~dpyv~v~~~--~~----~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 21 LSDPFARVSFL--NQ----SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred CCCCEEEEEEC--Ce----eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEe
Confidence 46668888763 32 33555444445688999999984 332 2322 3569999999876656679999986
Q ss_pred e
Q 004173 126 L 126 (770)
Q Consensus 126 ~ 126 (770)
.
T Consensus 95 ~ 95 (135)
T cd04017 95 K 95 (135)
T ss_pred e
Confidence 3
No 154
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=88.87 E-value=3.1 Score=39.19 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=43.9
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCC-----------CCceeEe
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG-----------KDERLVG 121 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~-----------~~~~~vG 121 (770)
+|-||.+.+ +++ ..+|..+.-...+.|||...|++.- | ...|.|.|||.... +....+|
T Consensus 22 ~DPyv~v~~--~~~----~~kT~~v~~t~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 22 SDPYVTVQV--GKT----KKRTKTIPQNLNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred cCcEEEEEE--CCE----eeecceecCCCCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 455887765 332 2345444334568899999998742 2 45799999997531 2456899
Q ss_pred EEEEeee
Q 004173 122 GTTILLF 128 (770)
Q Consensus 122 ~~~~~LF 128 (770)
.+.+++=
T Consensus 92 ~~~i~l~ 98 (127)
T cd04027 92 QTIIEVR 98 (127)
T ss_pred EEEEEhH
Confidence 9999873
No 155
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=88.49 E-value=1.7 Score=40.79 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=47.0
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
.+|-||.+.+ +++.. -+|.-+.-+..+.|||-.+|++.-. ...|.|+||+...-.+...+|.+.++|=
T Consensus 21 ~sDpYv~v~l--~~~~~---~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~ 88 (121)
T cd08401 21 MRDCYCTVNL--DQEEV---FRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKE 88 (121)
T ss_pred CcCcEEEEEE--CCccE---EEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence 4566988877 44432 2333222244678999999997621 3589999999876556678999999973
No 156
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=88.29 E-value=2.7 Score=38.48 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
.++-||.+.+ +++.. -+|+-+.- ..+.|||...|++.=.++ ....|.|.+||.....+...+|.+.+....
T Consensus 17 ~~dpyv~v~~--~~~~~---~kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 17 TRDPYCTVSL--DQVEV---ARTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCceEEEEE--CCEEe---EecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 4667888876 44332 23433333 568899999999865444 235777888886543344567777665544
No 157
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=87.30 E-value=3.2 Score=40.69 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=48.2
Q ss_pred ceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC----CceeEeEEEEeeec
Q 004173 54 ELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFN 129 (770)
Q Consensus 54 ~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd 129 (770)
+.|++++| ||... .+|+-+.-...+.|+|-..|+ ++|.-+.|+|+||...+.. +...||-+.|++-+
T Consensus 28 ~~Y~~i~L--d~~~v---aRT~v~~~~~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 28 RYYCELCL--DKTLY---ARTTSKLKTDTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CceEEEEE--CCEEE---EEEEEEcCCCCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 45777654 44333 245555545567899999996 8888788999999765432 45799999999876
No 158
>PLN03008 Phospholipase D delta
Probab=84.62 E-value=2.4 Score=51.93 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=48.7
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
..+|.||++.| ++..+. +|..+.-..++.|||.++|++.- ..+.|.|+|||...-+ ..+||-+.++|=
T Consensus 75 ~tSDPYV~I~L--g~~rv~---RTrVi~n~~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~g-aD~IG~a~IPL~ 142 (868)
T PLN03008 75 ITSDPYVTVVV--PQATLA---RTRVLKNSQEPLWDEKFNISIAH----PFAYLEFQVKDDDVFG-AQIIGTAKIPVR 142 (868)
T ss_pred CCCCceEEEEE--CCccee---eEEeCCCCCCCCcceeEEEEecC----CCceEEEEEEcCCccC-CceeEEEEEEHH
Confidence 46799999999 443332 56544334468899999999764 3578999999965433 467888888763
No 159
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=83.49 E-value=3.2 Score=46.62 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=79.2
Q ss_pred EEEEEecCcceecccCcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCC
Q 004173 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (770)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~ 611 (770)
.|.+|.....-.-+..+.-.+++|.+ | ..+++|. -+++-|.....++..++.-... -++.+...+|+.-|.+.
T Consensus 44 ~i~~I~~~~GD~H~~Gr~V~~l~f~~--g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Y 116 (370)
T PF13575_consen 44 KITSIEFGLGDTHNGGRSVAILEFSS--G--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGY 116 (370)
T ss_pred CceEecCCCCCcCCCCceEEEEEECC--C--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcc
Confidence 46667654444444457888888863 3 3799999 5899999988888877764221 23567788999998889
Q ss_pred CccceeccccHHHHHhccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC
Q 004173 612 GLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD 675 (770)
Q Consensus 612 GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD 675 (770)
|..|||+..+..+ .+..++|-+-+.+..-+.|+||..|
T Consensus 117 gW~EfI~~~~c~~--------------------------~~ev~~yY~r~G~llal~y~L~~~D 154 (370)
T PF13575_consen 117 GWQEFIEHEPCNS--------------------------EEEVERYYYRLGVLLALLYLLNGTD 154 (370)
T ss_pred eeEEEecCCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999998433110 2446667677777888899999999
No 160
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=80.97 E-value=5 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=43.4
Q ss_pred EEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 004173 56 YVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (770)
Q Consensus 56 ~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (770)
||.+++ |++ -..|....- +.+.|||-..|.+. + +. +.|.|.|||-.. .....+|.+.++|=+
T Consensus 23 YV~Ik~--g~~----k~kT~v~~~-~nP~WnE~F~F~~~--~-~~-~~L~v~V~dkd~-~~DD~lG~v~i~L~~ 84 (127)
T cd08394 23 YVTLKV--QNV----KSTTIAVRG-SQPCWEQDFMFEIN--R-LD-LGLVIELWNKGL-IWDTLVGTVWIPLST 84 (127)
T ss_pred eEEEEE--CCE----EeEeeECCC-CCCceeeEEEEEEc--C-CC-CEEEEEEEeCCC-cCCCceEEEEEEhHH
Confidence 888877 553 334555443 46889999999973 3 33 339999999543 355689999999854
No 161
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=79.36 E-value=4.3 Score=40.59 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=45.4
Q ss_pred CceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
||=||.+.+ |++.+ +|.-.--..++.|||-++|+|+=.. .-|.++|||...-...-.+|-++|+|=
T Consensus 27 SDPyVVl~l--g~q~l----kT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~fs~dD~mG~A~I~l~ 92 (168)
T KOG1030|consen 27 SDPYVVLEL--GNQKL----KTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTFSSDDFMGEATIPLK 92 (168)
T ss_pred CCCeEEEEE--CCeee----eeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCCCcccccceeeeccH
Confidence 444666543 45444 4442222345889999999987544 457899999877666678999999874
No 162
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.00 E-value=13 Score=42.72 Aligned_cols=109 Identities=20% Similarity=0.280 Sum_probs=72.8
Q ss_pred ceEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCcc
Q 004173 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (770)
Q Consensus 5 ~~~~~~s~dl~~~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (770)
.+.|...+|... ..+.|.-+++.. .|... ....+|=||.+.+.-+- -.-.+|.-+--...+.
T Consensus 155 ~l~fsl~Yd~~~-~~L~V~V~qa~~----Lp~~d----------~~g~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~ 216 (421)
T KOG1028|consen 155 NLQFSLQYDFEL-NLLTVRVIQAHD----LPAKD----------RGGTSDPYVKVYLLPDK---KGKFKTRVHRKTLNPV 216 (421)
T ss_pred eEEEEEEecccC-CEEEEEEEEecC----CCccc----------CCCCCCCeeEEEEcCCC---CCcceeeeeecCcCCc
Confidence 356777777663 344445555531 22111 11246669999887443 1234565555555688
Q ss_pred ccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecccc
Q 004173 85 WNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKM 132 (770)
Q Consensus 85 Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~ 132 (770)
|||.+.|+|.+.+|.. ..|.|+||+...=.....+|-+.++|.+-+-
T Consensus 217 fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~~ 263 (421)
T KOG1028|consen 217 FNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVDL 263 (421)
T ss_pred cccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCccccc
Confidence 9999999999999985 5899999998764566799999999776543
No 163
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=73.50 E-value=11 Score=47.74 Aligned_cols=87 Identities=24% Similarity=0.418 Sum_probs=61.6
Q ss_pred eEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccC
Q 004173 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD 97 (770)
Q Consensus 18 ~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~d 97 (770)
|.|+|.+.+|.+.. .+-.....|=||+++ +++-- .+ .|+-+.-..++.|||.+-.||.
T Consensus 438 v~vkI~sa~~lk~~--------------d~~i~~~vDpyit~~-~~~r~-~g---kT~v~~nt~nPvwNEt~Yi~ln--- 495 (1227)
T COG5038 438 VEVKIKSAEGLKKS--------------DSTINGTVDPYITVT-FSDRV-IG---KTRVKKNTLNPVWNETFYILLN--- 495 (1227)
T ss_pred EEEEEeeccCcccc--------------cccccCCCCceEEEE-ecccc-CC---ccceeeccCCccccceEEEEec---
Confidence 67899999996542 222334566699988 44321 11 4444433345789999999988
Q ss_pred cCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 98 LTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 98 LP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
..+..|.+.+||....+....+|.+-+.|
T Consensus 496 -s~~d~L~LslyD~n~~~sd~vvG~~~l~L 524 (1227)
T COG5038 496 -SFTDPLNLSLYDFNSFKSDKVVGSTQLDL 524 (1227)
T ss_pred -ccCCceeEEEEeccccCCcceeeeEEech
Confidence 78889999999987777778899997765
No 164
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=70.43 E-value=7.4 Score=35.19 Aligned_cols=72 Identities=15% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
+++.+||..-+- =.||. +..|+-+-..+.+.+.|...|.|+.-+|+. ..|.|.|+. .- ++...+||.++++=
T Consensus 19 e~~~i~ikg~~t-l~kpv--~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~-~~-~RKe~iG~~sL~l~ 90 (103)
T cd08684 19 ENPTIYIKGILT-LPKPV--HFKSSAKEGSNDIEFMETFVFAIKLQNLQT-VRLVFKIQT-QT-PRKRTIGECSLSLR 90 (103)
T ss_pred cCCeeEEEEEEe-cCCCc--cccchhhcCCCChhHHHHHHHHHHHhhccc-eEEEEEeec-cC-CccceeeEEEeecc
Confidence 457778876443 12222 345676667777899999999999999985 679999998 22 34458999999874
No 165
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.16 E-value=17 Score=41.42 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (770)
-||=||.++|.-+.+-.+... |.-..-.-++.|||..+|.++=.| .+-||.+.|||-......-..|..++.+
T Consensus 200 lSDPYvk~kliPD~~~~sKqK-TkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgi 272 (683)
T KOG0696|consen 200 LSDPYVKLKLIPDPKNESKQK-TKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGI 272 (683)
T ss_pred CCCcceeEEeccCCcchhhhh-hhhhhhhcCccccceeEEeccccc--ccceeEEEEecccccccccccceecccH
Confidence 377799999996655554431 211111234679999999988877 4668999999987765555667666554
No 166
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=61.74 E-value=23 Score=33.04 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=44.9
Q ss_pred CCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 004173 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (770)
..++-||.+-+= +... .+|. + +.+..|||-..||| | ..-.+.|+|||..+ ....|||-.=++|.|=
T Consensus 21 ~~~etyV~IKve--d~~k---aRTr--~-srnd~WnE~F~i~V---d--k~nEiel~VyDk~~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 21 KRPETYVSIKVE--DVER---ARTK--P-SRNDRWNEDFEIPV---E--KNNEEEVIVYDKGG-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred cCCCcEEEEEEC--CEEE---Eecc--C-CCCCcccceEEEEe---c--CCcEEEEEEEeCCC-CeecceeeehhhHHHH
Confidence 345667776543 2211 1222 1 24567999988887 3 47789999999744 4678999877777774
Q ss_pred ccccc
Q 004173 131 KMQLK 135 (770)
Q Consensus 131 ~~~Lr 135 (770)
=..+|
T Consensus 87 ~Ee~R 91 (109)
T cd08689 87 AEEIR 91 (109)
T ss_pred HHHHH
Confidence 33333
No 167
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=56.00 E-value=79 Score=30.02 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=55.4
Q ss_pred CeEEEEEeecCCCCCCCCCCCcCCCCCCCCCCcCCCCceEEEEEEEeCCcccccceeeccccC-CCCccccccEEecccc
Q 004173 17 PVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKY 95 (770)
Q Consensus 17 ~~~~ki~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpi~~ 95 (770)
.+.|.|..|+|... ... .|.+..--|++..+ ...|...+. .....|||-+.+++.+
T Consensus 8 ~~~l~i~~l~~~p~--------------------~~~--~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl 64 (143)
T PF10358_consen 8 QFDLTIHELENLPS--------------------SNG--KVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTL 64 (143)
T ss_pred EEEEEEEEeECcCC--------------------CCC--EEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEE
Confidence 46788888888422 123 33343333444332 223333333 3347899999999655
Q ss_pred cCc-----CccCceEEEEEeecCCCCceeEeEEEEeeecccc
Q 004173 96 RDL-----TAHSQLALTVWDVSCGKDERLVGGTTILLFNSKM 132 (770)
Q Consensus 96 ~dL-----P~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~ 132 (770)
--= -..-.+.|+|+...+.++...+|.+++.|=++=+
T Consensus 65 ~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 65 YRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 331 3445788999988543333689999998866533
No 168
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=55.08 E-value=21 Score=48.49 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred CCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc-
Q 004173 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS- 130 (770)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~- 130 (770)
.+|=||.+.+=. | .+.+|+.+.-..++.|||-++|.+ .+-|.+-.|.|.|||.+.-+++ .+|-++++|=+-
T Consensus 1998 ~sdPyv~l~~g~-~----~~~kTkvvk~~~nP~Wne~f~~~~--~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv 2069 (2102)
T PLN03200 1998 NTNAFCKLTLGN-G----PPRQTKVVSHSSSPEWKEGFTWAF--DSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVV 2069 (2102)
T ss_pred CCCCeEEEEECC-C----CcccccccCCCCCCCcccceeeee--cCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHh
Confidence 355577775432 2 244666666566789999999754 3557788899999997644343 899999999663
Q ss_pred cccccccceeE
Q 004173 131 KMQLKTGKQKL 141 (770)
Q Consensus 131 ~~~Lr~G~~~L 141 (770)
.+.-.+|.+.|
T Consensus 2070 ~~~~~~~~~~L 2080 (2102)
T PLN03200 2070 MEGTYSGEYSL 2080 (2102)
T ss_pred cCceeeeeeec
Confidence 23334455554
No 169
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=50.46 E-value=39 Score=28.80 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhhcc
Q 004173 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALRFE 402 (770)
Q Consensus 368 ~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLkyE 402 (770)
.|+.||..|+..|..+.+++ .+++|++++.-+
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 55677777777777776544 555566666554
No 170
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=46.96 E-value=30 Score=23.76 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHhHHHHHHHhh
Q 004173 372 VRAYAVCILERADDDELQCYLLQLVQALR 400 (770)
Q Consensus 372 VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 400 (770)
||.+|+..|-++.|+ ..++-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~---~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP---RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH---HHHHHHHHHhc
Confidence 799999999999885 45566666664
No 171
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=43.37 E-value=1.7e+02 Score=29.14 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=60.3
Q ss_pred CCCceEEEEEEEeCCc-------ccccceeeccccC---CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeE
Q 004173 51 RRPELYVECALYIDGA-------PFGLPMRTRLESM---GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLV 120 (770)
Q Consensus 51 ~~~~l~V~~~l~~~~~-------~l~~p~~T~~~~~---~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~v 120 (770)
..+.||++-++.+|.. .+.--.|+.+..- .+...||--+++-.+.....-=-+|.|+||..+.-+...+.
T Consensus 15 ~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~ 94 (168)
T PF07162_consen 15 EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVE 94 (168)
T ss_pred CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEe
Confidence 3568999999987442 2111223333222 34467999999999988886556999999998876667777
Q ss_pred eEEEEeeecccccccccceeE--Eeec
Q 004173 121 GGTTILLFNSKMQLKTGKQKL--RLWP 145 (770)
Q Consensus 121 G~~~~~LFd~~~~Lr~G~~~L--~lwp 145 (770)
|-..+.| -+.-|.+.+ .+|.
T Consensus 95 GYG~~~l-----P~~pG~h~~~v~~wr 116 (168)
T PF07162_consen 95 GYGFCHL-----PTQPGRHEVEVPTWR 116 (168)
T ss_pred EEeEEEe-----CCCCceEEEEEEEEe
Confidence 7766666 345677655 4674
No 172
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=30.44 E-value=79 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.340 Sum_probs=35.7
Q ss_pred CCCCCCCCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 004173 710 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVS 752 (770)
Q Consensus 710 s~ip~~~~~~-d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~ 752 (770)
+++|.++.+. ..+|.++++-..-++|..||+..+.+-|++...
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 6889888654 357889998888999999999999999987643
No 173
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=29.13 E-value=1.2e+02 Score=30.67 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=49.8
Q ss_pred CHhhhhhccCCCCCCHHHHHHHHHHHhcCC--hhHHHHhHHH---HHHHhhccC---CCchHHHHHHHHHhhh--chhhH
Q 004173 355 DVCDALELLSPVFESEEVRAYAVCILERAD--DDELQCYLLQ---LVQALRFER---SDKSRLSQFLVQRSSH--NIELA 424 (770)
Q Consensus 355 ~~~dALeLL~~~f~~~~VR~yAV~~L~~~~--d~eL~~yLlQ---LVQaLkyE~---~~~s~La~fLi~rA~~--n~~i~ 424 (770)
+..-|..||+-.=.+|.+++.|++.|+.+. .+++..-|++ .++||||=. ..++.-++-+++-|.+ |+.+=
T Consensus 60 Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 60 SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 344455555554457999999999998876 4445444554 899999852 2345556667777654 34555
Q ss_pred HHHHHHHH
Q 004173 425 SFLRWYVS 432 (770)
Q Consensus 425 ~~l~W~L~ 432 (770)
+..|+++.
T Consensus 140 ~~V~~ff~ 147 (167)
T PF07035_consen 140 YAVFRFFE 147 (167)
T ss_pred HHHHHHHH
Confidence 55666554
No 174
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.20 E-value=93 Score=28.88 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=49.3
Q ss_pred hHHHhhhchhhHhhhhccccCCCHHHHHHHHH-------Hhccc-CCCCHhhhhhccCCCCC-------C---HHHHHHH
Q 004173 315 FRFSLMSEKRALTKFLRSVEWSDVQEAKQALE-------LMGRW-EMIDVCDALELLSPVFE-------S---EEVRAYA 376 (770)
Q Consensus 315 ~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~-------LL~~W-~~i~~~dALeLL~~~f~-------~---~~VR~yA 376 (770)
++-|+..+|..+..||+.-||.+.+++.+.+. |+.-| ..=-...||+||..--. + ..+...+
T Consensus 6 lk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~i 85 (108)
T PF10366_consen 6 LKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETI 85 (108)
T ss_pred HHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHH
Confidence 35566668999999999889999999987654 22222 34467888888753222 1 2344556
Q ss_pred HHHHhcCChhHHH
Q 004173 377 VCILERADDDELQ 389 (770)
Q Consensus 377 V~~L~~~~d~eL~ 389 (770)
|+-|++++.+++-
T Consensus 86 v~yL~~L~~~~~d 98 (108)
T PF10366_consen 86 VQYLQKLGNEDLD 98 (108)
T ss_pred HHHHHhCChhhhH
Confidence 7777777655543
No 175
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.55 E-value=79 Score=25.96 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=35.9
Q ss_pred cCCCCCCCCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Q 004173 709 GSNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVS 752 (770)
Q Consensus 709 ~s~ip~~~~~~-d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~ 752 (770)
.+++|.++.+. .++|.++++-..-++|.-||+..+.+-|++--.
T Consensus 2 ~~~lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 2 FAGLPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred CCccccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 46889888654 357899999888999999999999888877543
No 176
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=26.18 E-value=3.9e+02 Score=33.34 Aligned_cols=93 Identities=26% Similarity=0.385 Sum_probs=65.2
Q ss_pred CcceeEEEEEeCCCCeEEEEEeeCcchhHHHHHHHHHHHHHHHHHhcCCCceeeeeEEEEecCCCCccceeccccHHHHH
Q 004173 547 ALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQIL 626 (770)
Q Consensus 547 ~~~P~~l~f~~~dg~~~~~IfK~GDDLRQD~lvlQli~lmd~i~~~~~ldl~l~~Y~Vl~t~~~~GlIE~V~s~tl~~I~ 626 (770)
.+.=.++.|. +| .++++|. -+|+-|+...+++..++.- +....+...+|+.-+ +.|..|||+..+
T Consensus 102 g~~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~----~~~~~~~~~~~l~~~-~ygw~EfI~~~~----- 166 (825)
T cd04792 102 GRVVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSF----LGALPLRTPKVLDRG-DYGWEEFIEHQP----- 166 (825)
T ss_pred CceEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhc----CCccccccceeeecC-CcceEEeecCCC-----
Confidence 3445556664 33 3689999 5899999999998888763 222334777888766 589999997322
Q ss_pred hccCcHHHHHHhhCCCCCCCCcccHHHHhhhhccchhhhhhhheecccC
Q 004173 627 SEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGD 675 (770)
Q Consensus 627 ~~~~~l~~~l~~~~~~~~~~~~~~~~a~~nFi~S~AgysV~tYiLGIGD 675 (770)
.. ..+..++|-+-+.++.-+.|+||.-|
T Consensus 167 ---------------c~------~~~e~~~fY~r~G~llal~y~L~~tD 194 (825)
T cd04792 167 ---------------CQ------SKEEVERYYYRLGGLLALLYLLNATD 194 (825)
T ss_pred ---------------CC------CHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 11 03456677777778888899999999
No 177
>PRK05114 hypothetical protein; Provisional
Probab=25.56 E-value=1e+02 Score=25.59 Aligned_cols=44 Identities=9% Similarity=0.329 Sum_probs=36.8
Q ss_pred CCCCCCCCCc-hhHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhC
Q 004173 710 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVSA 753 (770)
Q Consensus 710 s~ip~~~~~~-d~~i~~l~~rl~l~lse~eA~~~f~~lI~~S~~s 753 (770)
+++|.++.+. ..+|.++++-..-++|--||+..+.+-|++....
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 4889898654 3578999998889999999999999999987643
No 178
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=25.07 E-value=5.9e+02 Score=30.62 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=72.4
Q ss_pred cCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCC------CCHHHHHHHHHHHhcC----ChhHHHHhHHHHHHHhhccC
Q 004173 334 EWSDVQEAKQALELMGRWEMIDVCDALELLSPVF------ESEEVRAYAVCILERA----DDDELQCYLLQLVQALRFER 403 (770)
Q Consensus 334 ~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f------~~~~VR~yAV~~L~~~----~d~eL~~yLlQLVQaLkyE~ 403 (770)
.|.....+-|.+..|..-+|...+..+.=+-|.- ++++||+-|..+|.++ +..++..|+|-|++++-.=.
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 6777776666666555556655555554444432 3689999999999664 67889999999999986532
Q ss_pred -C-----------------Cch--HHHHHHHHHhhhc-----hhhHHHHHHHHHHHccCchh
Q 004173 404 -S-----------------DKS--RLSQFLVQRSSHN-----IELASFLRWYVSVEFHDPVH 440 (770)
Q Consensus 404 -~-----------------~~s--~La~fLi~rA~~n-----~~i~~~l~W~L~~e~~d~~~ 440 (770)
+ ... +|.-=|++|++.. .+-+-..+|++-.+.+|+.-
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence 1 011 2233455665543 36777899999999988764
No 179
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.75 E-value=72 Score=35.42 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCceEEEEEEEeCCcccccceeeccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 004173 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (770)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (770)
...+|+||+.-+-.+...-. --.|+.+.-.-.+.+|+-..+.|.-.|| ..-++.+++||....+...++|+.-..+.
T Consensus 251 ng~sDpyvS~~l~pdv~~~f-kkKt~~~K~t~~p~fd~~~~~~i~pgdL-a~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKF-KKKTQQKKKTLNPEFDEEFFYDIGPGDL-AYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCCCccceeecCCCcchhh-cccCcchhccCCccccccccccCCccch-hcceEEEeecccCCCcCccCCCccccccc
Confidence 34567777776552221111 1112221112346689999999999999 89999999999866555566777655444
No 180
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.45 E-value=86 Score=28.53 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhcC---ChhHHHHhHHHHHHHhh
Q 004173 369 SEEVRAYAVCILERA---DDDELQCYLLQLVQALR 400 (770)
Q Consensus 369 ~~~VR~yAV~~L~~~---~d~eL~~yLlQLVQaLk 400 (770)
|.+||-||.+.|-++ .-++++.|+.++..+|.
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999543 34566667777666554
No 181
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.67 E-value=1.4e+02 Score=36.60 Aligned_cols=93 Identities=25% Similarity=0.461 Sum_probs=0.0
Q ss_pred eccccCCCCccccccEEecccccCcCccCceEEEEEeec---------------------------------CCCC---c
Q 004173 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS---------------------------------CGKD---E 117 (770)
Q Consensus 74 T~~~~~~~~~~Wnewl~fpi~~~dLP~~a~L~~ti~~~~---------------------------------~~~~---~ 117 (770)
|+.++-+=+++|+|...|.|. |+..+ ++.+-|||.. .++. .
T Consensus 181 tsvk~~TLnPkW~EkF~F~Ie--Dv~tD-qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTIE--DVQTD-QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred cccccccCCcchhhheeeehh--ccccc-eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Q ss_pred eeEeEEEEee-----------ec----ccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHH
Q 004173 118 RLVGGTTILL-----------FN----SKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKL 175 (770)
Q Consensus 118 ~~vG~~~~~L-----------Fd----~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p~~~~~~~~~~~~rle~l 175 (770)
-.+|+.|||| |. .+..=.||..+|++|-.+..++...+ ..+..+.+..+|-|
T Consensus 258 DFLGciNipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a~s------e~~~~~~~~hielL 324 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRAGS------EDETLDVKEHIELL 324 (1103)
T ss_pred ccccccccchhcCCcchHHHHhccCcccccccccceEEEEEEEeeeccccccC------ccchhhHHHHHHHH
No 182
>PLN02150 terpene synthase/cyclase family protein
Probab=22.34 E-value=76 Score=28.90 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHH
Q 004173 725 KLQEKFRLDLDDEACVHFFQDLINES 750 (770)
Q Consensus 725 ~l~~rl~l~lse~eA~~~f~~lI~~S 750 (770)
|+++. +.|++||.++++++|+++
T Consensus 13 YMke~---g~seeeA~~~i~~li~~~ 35 (96)
T PLN02150 13 YMKQH---GVTKEEAVSELKKMIRDN 35 (96)
T ss_pred HhccC---CCCHHHHHHHHHHHHHHH
Confidence 66665 999999999999999888
No 183
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=21.61 E-value=1.2e+02 Score=25.62 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHhcCChhHHHHhHHHHHHHhh
Q 004173 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALR 400 (770)
Q Consensus 368 ~~~~VR~yAV~~L~~~~d~eL~~yLlQLVQaLk 400 (770)
+++.||..|+.+|.++.+.+. ++.|+++++
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~---~~~L~~~l~ 41 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEA---IPALIELLK 41 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhH---HHHHHHHHc
Confidence 468999999999999988866 555556664
No 184
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=20.65 E-value=1.3e+02 Score=26.65 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHhHHHhhhchhhHhhhhccccCCCHHHHHHHHHHhcccCCCCHhhhhhccCCCCCCHHHHHHHHHHHhc
Q 004173 303 TLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILER 382 (770)
Q Consensus 303 ~Lt~~ek~llW~~R~~l~~~~~aL~k~L~sv~W~~~~e~~~a~~LL~~W~~i~~~dALeLL~~~f~~~~VR~yAV~~L~~ 382 (770)
.|+++| +++|+++|.+.+.- =+.+|.|...+ ..|+.|--.+|-..|.-..-...+++.|++
T Consensus 10 ~L~~~E---lkkFK~~L~~~~~~---g~~~Ip~~~le-------------~ad~~dla~lLv~~y~~~~A~~vt~~il~~ 70 (82)
T cd08321 10 DLEEDE---LKKFKWKLRDIPLE---GFPRIPRGELE-------------NADRVDLVDKMVQFYGEEYAVEVTVKILRK 70 (82)
T ss_pred HhCHHH---HHHHHHHHhhhhhc---cCCCCChHhhc-------------cCCHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 566666 89999999875322 34567776542 235566666777777777777889999999
Q ss_pred CChhHHHHhH
Q 004173 383 ADDDELQCYL 392 (770)
Q Consensus 383 ~~d~eL~~yL 392 (770)
++-.++.-.|
T Consensus 71 in~~~lae~L 80 (82)
T cd08321 71 MNQNELAEKL 80 (82)
T ss_pred hcchHHHHHH
Confidence 8877776544
Done!