BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004177
(770 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54R62|UCKC_DICDI Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3
SV=1
Length = 449
Score = 259 bits (661), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 234/381 (61%), Gaps = 10/381 (2%)
Query: 390 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANI 448
R T+K P+ D+ FD+G L+V+AIQ++ + ++G ++VGI GPSG+GKTS+A K+ ++
Sbjct: 17 RYTIK--PLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSV 74
Query: 449 VGCEV-VSLESYF-KSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506
+ + +SL++Y S Q+ + YDD+ +D LL KNISD+ + + T +P++D R
Sbjct: 75 LPKSILISLDNYLDSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGR 134
Query: 507 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-- 564
+K ++ E V++ EG+YALH EIR LDL +++ GGVH LI R+ RD R G
Sbjct: 135 YAYKRVQPPE-SKVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQP 193
Query: 565 FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDIL- 623
S I TV+PM++ IEP L A +++ N F+P + +++LKS KQ D++
Sbjct: 194 HESLQQITDTVYPMYKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIH 253
Query: 624 KILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFI 683
+L+ + + + D+YL +P T + D IRVR +G+++++ E ++EG FI
Sbjct: 254 SVLNKSTIQENTARYYDIYL-IPPNTTFANSSSCDWIRVRNADGQYSIMFSEEIKEGPFI 312
Query: 684 IQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGV 743
I P+VDF + ++ + GL++LGYQ VA I + I++DGKI+I D L++ ++QIKG
Sbjct: 313 ISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKIIISYDELEELGQTFVQIKGF 372
Query: 744 DKEAVAAAGSTLKLDGSYTTK 764
D +V AG L L+ +Y K
Sbjct: 373 DATSVQEAGKKLGLENNYLQK 393
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 175/318 (55%), Gaps = 25/318 (7%)
Query: 2 ENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVV 61
ENY +D +DF+ L +N+ DL K T +P++D+ + R K ++ S V+
Sbjct: 96 ENY-------DDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGRYAYKRVQPPESKVL 148
Query: 62 IVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-----SLDSLIDSIFPLF 116
+++G YAL +R LLD+RV++ GGVHF LI ++ D+ + SL + D+++P++
Sbjct: 149 LIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQPHESLQQITDTVYPMY 208
Query: 117 RKHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGACSI------SAFQGNEAQT 168
+ IEPDL A+I++ N+F IY LK + I S Q N A+
Sbjct: 209 KAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIHSVLNKSTIQENTAR- 267
Query: 169 DNFIEMYLRPPSAT-EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM 227
+ ++YL PP+ T + DWI++R + +Y + ++ I + FII P+ +F VG
Sbjct: 268 --YYDIYLIPPNTTFANSSSCDWIRVRNADGQYSIMFSEE-IKEGPFIISPRVDFVVGVN 324
Query: 228 TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRM 287
LGGL+ LGY +VA R ST G + +S++ ++ L +TF+ ++G + +V ++
Sbjct: 325 MLGGLMSLGYQMVAIIHRKSTIFKDGKIIISYDELEELGQTFVQIKGFDATSVQEAGKKL 384
Query: 288 GINGPWITKSYLEMVLEK 305
G+ ++ KSY+E+ +K
Sbjct: 385 GLENNYLQKSYIELYQDK 402
>sp|Q9GNF0|UCKD_DICDI Uridine-cytidine kinase D OS=Dictyostelium discoideum GN=udkD PE=2
SV=1
Length = 492
Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 117/373 (31%), Positives = 197/373 (52%), Gaps = 14/373 (3%)
Query: 398 MPDSYDFDRGLLLSVQAIQALLENKGLPVI-VGIGGPSGSGKTSLAHKMANIVGCEVVSL 456
+P FD+G + +AI+ L E +I +GI GP G+GKT+LA+K+ ++V ++SL
Sbjct: 82 VPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGVIISL 141
Query: 457 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP-IFDLETGARSGFKELEVS 515
+ + K E VKD YDD +D + +++++ + +P I + + +RS L S
Sbjct: 142 QDFVKLENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKIVNRKMESRS--ISLSTS 199
Query: 516 EDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN---DIM 572
+ VII EG YAL IR LD+ +A+ GGVH LI + R G S++ I
Sbjct: 200 K---VIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQIT 256
Query: 573 MTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFC 632
VFPMF+ +EP L A +KI + F+P+ ++V K+ Q + L
Sbjct: 257 NVVFPMFKAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNVV 316
Query: 633 SSAQNFIDMYLRLPGIPTNG--QLTESDCIRVRICE-GRFALLIREPLREGNFIIQPKVD 689
+NF DMYL P +G Q + + IR+R E G+F + + +G +P ++
Sbjct: 317 PVKKNFSDMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFYNEMMDGAVNTRPSLN 376
Query: 690 FDISISTVAGLLNLGYQAVAYIEASAFIYQDGK-ILIEVDHLQDAPSPYLQIKGVDKEAV 748
F+IS+ T+ GLL+LGYQ A + + ++ D ++I +++++ ++QIKG + V
Sbjct: 377 FEISVKTLGGLLSLGYQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIKGHSRREV 436
Query: 749 AAAGSTLKLDGSY 761
+ LK+ G++
Sbjct: 437 LDSAEKLKITGNH 449
Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 165/329 (50%), Gaps = 31/329 (9%)
Query: 17 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL 76
IDFD ++ L +L E K +IP ++ S+ I ++S V+I++G YAL AR+R L
Sbjct: 161 IDFDKVISTLNELKENKTVIIPKI---VNRKMESRSISLSTSKVIILEGAYALSARIRPL 217
Query: 77 LDIRVAVVGGVHFSLISKVQYDI---GDSCSLDSL---IDSIFPLFRKHIEPDLHHAQIR 130
LDI VA+ GGVH LI + I G + S D L + +FP+F+ +EPDL A+I+
Sbjct: 218 LDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQITNVVFPMFKAFVEPDLDQAKIK 277
Query: 131 INNRF--VSSFREAIYKLKCRSEAPGAC---SISAFQGNEAQTDNFIEMYLRPPS----A 181
I++ F +S E +Y K + + +S+ + NF +MYL PP
Sbjct: 278 IHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNVVPVKK-NFSDMYLYPPKYGVDG 336
Query: 182 TEEARINDWIKMRQS-----GIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLG 236
+A +WI++R+S I +Y ++D RP FE+ TLGGLL LG
Sbjct: 337 ISQADKRNWIRIRRSEHGQFNITFY-----NEMMDGAVNTRPSLNFEISVKTLGGLLSLG 391
Query: 237 YSVVASYKRA-STYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWIT 295
Y + A R + + ++ E I L++ F+ ++G +R+ V A ++ I G +
Sbjct: 392 YQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIKGHSRREVLDSAEKLKITGNHVP 451
Query: 296 KSYLEMVLEK-KGVPRLNTPPLFPNTPTT 323
+++L + +K K N L PN +
Sbjct: 452 QTFLYLYFKKLKKSKNPNYSKLKPNNTNS 480
>sp|B5ZBE2|URK_UREU1 Uridine kinase OS=Ureaplasma urealyticum serovar 10 (strain ATCC
33699 / Western) GN=udk PE=3 SV=1
Length = 207
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL----ESYFKSE------QVKDFKY 470
N P++V I G SGSGKT+ A+++ + S+ +SY+ S + + Y
Sbjct: 2 NAKSPILVLIAGASGSGKTTFANEIVARIPQNTTSVIICQDSYYISNSQLNKNERRLINY 61
Query: 471 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 530
D SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+FEG+YA++
Sbjct: 62 DHPSSFEWDLMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVFEGIYAIY 119
Query: 531 PE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHIEPHL 587
+ I + DL + + LI R+ RD R F S TV PM+ Q +EP
Sbjct: 120 DDVINQIADLKVFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSK 179
Query: 588 VHAHLKI 594
+A++ +
Sbjct: 180 KNANVSV 186
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
S ++D + + L D+ + K +P++DY+ + R+ K I + V++ +G YA+ D +
Sbjct: 66 SFEWDLMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVFEGIYAIYDDVIN 124
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+ D++V + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 125 QIADLKVFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANV 184
Query: 130 RI 131
+
Sbjct: 185 SV 186
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=udk PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 466
N P+++ I G SGSGKT+ A+++ ++V C+ +SY+ S ++ +
Sbjct: 2 NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57
Query: 467 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 526
YD SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+ EG+
Sbjct: 58 LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115
Query: 527 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 583
YA++ + I + DL I + LI R+ RD R F S TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175
Query: 584 EPHLVHAHLKI 594
EP +A++ +
Sbjct: 176 EPSKKNANVSV 186
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
S +++ + + L D+ + K +P++DY+ + R+ K I + V++++G YA+ D +
Sbjct: 66 SFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVIN 124
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+ D+++ + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 125 QIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANV 184
Query: 130 RI 131
+
Sbjct: 185 SV 186
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 /
27 / NCTC 11736) GN=udk PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 466
N P+++ I G SGSGKT+ A+++ ++V C+ +SY+ S ++ +
Sbjct: 2 NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57
Query: 467 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 526
YD SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+ EG+
Sbjct: 58 LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115
Query: 527 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 583
YA++ + I + DL I + LI R+ RD R F S TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175
Query: 584 EPHLVHAHLKI 594
EP +A++ +
Sbjct: 176 EPSKKNANVSV 186
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
S +++ + + L D+ + K +P++DY+ + R+ K I + V++++G YA+ D +
Sbjct: 66 SFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVIN 124
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+ D+++ + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 125 QIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANV 184
Query: 130 RI 131
+
Sbjct: 185 SV 186
>sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=udk PE=3 SV=1
Length = 222
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 429 GIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS------EQVKDFKYDDFSSLDLSL 480
GI G SG+GKT+L + I G V+ ++Y+K E+ + +D + D L
Sbjct: 10 GITGGSGAGKTTLTQNIKEIFGEDVSVICQDNYYKDRSHYTPEERANLIWDHPDAFDNDL 69
Query: 481 LSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDL 539
L +I ++N + P+FD G RS E+E VI+ EG+ + E+R +D+
Sbjct: 70 LISDIKRLKNNEIVQAPVFDFVLGNRSK-TEIETIYPSKVILVEGILVFENQELRDLMDI 128
Query: 540 WIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPH------LVH 589
I V ++ R+ RD G C MS+ + V PM ++ IEP +VH
Sbjct: 129 RIFVDTDADERILRRMVRDVQEQGDSVDCIMSR--YLSMVKPMHEKFIEPTRKYADIIVH 186
Query: 590 AHL-----------KIRNDFDPVLSPESSLFVLKS 613
+ KI+N + L + + +++ S
Sbjct: 187 GNYRQNVVTNILSQKIKNHLENALESDETYYMVNS 221
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-L 73
D+ D D L+ +++ L + P+FD+ NR +++ S V++V+G + + L
Sbjct: 63 DAFDNDLLISDIKRLKNNEIVQAPVFDFVLGNRSKTEIETIYPSKVILVEGILVFENQEL 122
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDI---GDS--CSLDSLIDSIFPLFRKHIEPDLHHAQ 128
R L+DIR+ V ++ ++ D+ GDS C + + + P+ K IEP +A
Sbjct: 123 RDLMDIRIFVDTDADERILRRMVRDVQEQGDSVDCIMSRYLSMVKPMHEKFIEPTRKYAD 182
Query: 129 IRINNRFVSSFREAIYKLKCRSEAPGA 155
I ++ + + I K ++ A
Sbjct: 183 IIVHGNYRQNVVTNILSQKIKNHLENA 209
>sp|Q38VV6|URK_LACSS Uridine kinase OS=Lactobacillus sakei subsp. sakei (strain 23K)
GN=udk PE=3 SV=1
Length = 211
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 418 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL---ESYFKS-----EQVKDFK 469
+ K P+I+G+ G SGSGKT+++ +A V L ++Y+K E+ ++
Sbjct: 1 MTSQKKAPIIIGVTGGSGSGKTTVSQAIAQKFANHSVMLLPQDAYYKHQDGSFEERQETN 60
Query: 470 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 529
YD + D LL + + ++N + + P++D + R+ E+ E VII EG+ L
Sbjct: 61 YDHPDAFDTDLLIEQATMLKNHQPIEQPVYDYKIHNRTD--EVVHVEPQDVIILEGILVL 118
Query: 530 -HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIE 584
+R +D+ + V L+ R+ RD G S +DI+M TV PMF + IE
Sbjct: 119 ADARLRDLMDIKVYVDTDDDIRLLRRMSRDMESRG--RSFDDIVMQYLKTVKPMFHEFIE 176
Query: 585 PHLVHAHL 592
P +A L
Sbjct: 177 PTKRYADL 184
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 11/130 (8%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
D+ D D L++ L + P++DY+ NR +V+ V+I++G L DARL
Sbjct: 65 DAFDTDLLIEQATMLKNHQPIEQPVYDYKIHNRT-DEVVHVEPQDVIILEGILVLADARL 123
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQ 128
R L+DI+V V L+ ++ D+ S D ++ ++ P+F + IEP +A
Sbjct: 124 RDLMDIKVYVDTDDDIRLLRRMSRDMESRGRSFDDIVMQYLKTVKPMFHEFIEPTKRYAD 183
Query: 129 IRI----NNR 134
+ + NNR
Sbjct: 184 LIVPEGGNNR 193
>sp|O74427|URK1_SCHPO Uridine kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=urk1 PE=3 SV=1
Length = 454
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 428 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFKS---EQVK-----DFKYDDFSSL 476
+GI GPSGSGKTS+A K N+ ++SL+S++KS EQ K D+ +D ++
Sbjct: 24 IGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAI 83
Query: 477 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 535
D LL + +++ GR+ +PI+ R E +II EG++AL+ E IR
Sbjct: 84 DWDLLFVKLLELKQGRKVDIPIYSFNEHNR--LPETNTLFGASIIILEGIFALYDEKIRS 141
Query: 536 SLDLWIAVVGGVHSHLISRVQRDKSRMG 563
LD+ + + L R+ RD + G
Sbjct: 142 LLDVSVFLDTDSDVCLSRRLNRDINYRG 169
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI-GSKVIKGASSGVVIVDGTYAL-DAR 72
++ID+D L L +L +G+ IP++ + + NR+ + + GAS ++I++G +AL D +
Sbjct: 81 EAIDWDLLFVKLLELKQGRKVDIPIYSFNEHNRLPETNTLFGAS--IIILEGIFALYDEK 138
Query: 73 LRSLLDIRV 81
+RSLLD+ V
Sbjct: 139 IRSLLDVSV 147
>sp|P44533|URK_HAEIN Uridine kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=udk PE=3 SV=1
Length = 213
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 426 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 531
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 532 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 589 HAHLKI 594
+A + I
Sbjct: 184 YADIVI 189
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L D R+
Sbjct: 68 NSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLTDERV 126
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP +A
Sbjct: 127 RQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQYAD 186
Query: 129 IRI 131
I I
Sbjct: 187 IVI 189
>sp|A5UFT8|URK_HAEIG Uridine kinase OS=Haemophilus influenzae (strain PittGG) GN=udk
PE=3 SV=1
Length = 213
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 426 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 531
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 532 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 589 HAHLKI 594
+A + I
Sbjct: 184 YADIVI 189
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L D R+
Sbjct: 68 NSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLTDERV 126
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP +A
Sbjct: 127 RQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQYAD 186
Query: 129 IRI 131
I I
Sbjct: 187 IVI 189
>sp|Q4QP55|URK_HAEI8 Uridine kinase OS=Haemophilus influenzae (strain 86-028NP) GN=udk
PE=3 SV=1
Length = 213
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 426 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 531
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 532 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 589 HAHLKI 594
+A + I
Sbjct: 184 YADIVI 189
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L D R+
Sbjct: 68 NSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLTDERV 126
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP +A
Sbjct: 127 RQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQYAD 186
Query: 129 IRI 131
I I
Sbjct: 187 IVI 189
>sp|Q55EL3|UCKA_DICDI Uridine-cytidine kinase A OS=Dictyostelium discoideum GN=udkA PE=3
SV=1
Length = 499
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 65/317 (20%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMA---NIVGCEVVSLESYFKS----EQVKDFKYDDFSSLD 477
P+++G+ G S SGKT++ K+ N+ ++S++S++K+ + +D ++ D
Sbjct: 71 PLVIGVCGGSASGKTTVCDKIIANLNVRWVVLLSMDSFYKNLSKDNDPSKYNFDHPNAFD 130
Query: 478 LSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKS 536
L+ K IS++R G++ +P + +T +R ++ D VII EG+ L+ E+R
Sbjct: 131 YDLMVKTISELRAGKKVNIPKYCFKTHSRLVHQDTVYGAD--VIILEGILTLYSKELRDL 188
Query: 537 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF--PMFQQHIEP--------- 585
+D+ I + L R++RD + G + F P F +I P
Sbjct: 189 MDIKIFIDTDDDVRLARRLKRDIAERGRTLESVLHQYNTFVKPSFDDYIIPLKKYADIIV 248
Query: 586 ----------HLVHAHLKIR---NDFDPVLSPE---------SSLFVLKSNKQV-AYQDI 622
+L+ H++++ FDP + + SS+ V+K Q+ A I
Sbjct: 249 PRGSDNIVAINLLTNHIRLKLKERGFDPEKTAQLDLEGLELPSSIHVIKETNQIKAMLSI 308
Query: 623 LKILDPA---------KFCS----SAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRF 669
L+ D + CS A ++ ++ PT G L + + RIC
Sbjct: 309 LRNKDTKVGDFVFYSDRLCSLIIEEALTYLPFTEKIVTTPT-GSLYHGEELNSRIC---- 363
Query: 670 ALLIREPLREGNFIIQP 686
AL++ LR G + QP
Sbjct: 364 ALVV---LRAGGCMEQP 377
>sp|Q91YL3|UCKL1_MOUSE Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1
Length = 548
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 428 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFK------SEQV--KDFKYDDFSSL 476
+G+GG S SGKT++A + ++ ++S++S++K EQ +F +D +
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAF 160
Query: 477 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 535
D L+ + ++ GR +VPI+D T +R K+ + VIIFEG+ A + + +
Sbjct: 161 DFDLIISTLKKLKQGRSVQVPIYDFTTHSRK--KDWKTLYGANVIIFEGIMAFADKTLLE 218
Query: 536 SLDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPHL 587
LD+ I V L+ R++RD S G + Q + V P F Q+I+P +
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKF--VKPAFDQYIQPTM 272
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS-KVIKGASSGVVIVDGTYAL-DAR 72
D+ DFD ++ L+ L +G+ +P++D+ +R K + GA+ V+I +G A D
Sbjct: 158 DAFDFDLIISTLKKLKQGRSVQVPIYDFTTHSRKKDWKTLYGAN--VIIFEGIMAFADKT 215
Query: 73 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHA 127
L LLD+++ V L+ +++ DI + ++ +I + P F ++I+P + A
Sbjct: 216 LLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMRLA 275
Query: 128 QI 129
I
Sbjct: 276 DI 277
>sp|Q9NWZ5|UCKL1_HUMAN Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2
Length = 548
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 428 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFK--SEQVKD------FKYDDFSSL 476
+G+GG S SGKT++A + ++ ++S++S++K +EQ ++ F +D +
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAF 160
Query: 477 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 535
D L+ + ++ G+ KVPI+D T +R K+ + VIIFEG+ A + + +
Sbjct: 161 DFDLIISTLKKLKQGKSVKVPIYDFTTHSRK--KDWKTLYGANVIIFEGIMAFADKTLLE 218
Query: 536 SLDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPHL 587
LD+ I V L+ R++RD S G + Q + V P F Q+I+P +
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKF--VKPSFDQYIQPTM 272
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS-KVIKGASSGVVIVDGTYAL-DAR 72
D+ DFD ++ L+ L +GK +P++D+ +R K + GA+ V+I +G A D
Sbjct: 158 DAFDFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGAN--VIIFEGIMAFADKT 215
Query: 73 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHA 127
L LLD+++ V L+ +++ DI + ++ +I + P F ++I+P + A
Sbjct: 216 LLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLA 275
Query: 128 QI 129
I
Sbjct: 276 DI 277
>sp|B2G882|URK_LACRJ Uridine kinase OS=Lactobacillus reuteri (strain JCM 1112) GN=udk
PE=3 SV=1
Length = 218
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 419 LENKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSE------QVKDFK 469
++ PV++G+ G SGSGKT++++K+ + + ++++ ++Y+ + + K
Sbjct: 3 IQQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVN 62
Query: 470 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 529
YD + D L K ++D+R+ + ++P++D RS K + V E VII EG+ L
Sbjct: 63 YDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTRSD-KTVHV-EPTDVIILEGILIL 120
Query: 530 HPE-IRKSLDLWIAV-----VGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI 583
E +R +D+ + V + + V+R +S + ++Q + TV PM+ Q +
Sbjct: 121 DDERLRDLMDIKVYVDTDDDIRIIRRIQRDMVERGRS-LDSIITQ--YLATVKPMYHQFV 177
Query: 584 EP 585
EP
Sbjct: 178 EP 179
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
+ D D L++ L DL K +P++DY Q R K + + V+I++G L D RLR
Sbjct: 68 AFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLR 126
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 129
L+DI+V V +I ++Q D+ + SLDS+I ++ P++ + +EP +A I
Sbjct: 127 DLMDIKVYVDTDDDIRIIRRIQRDMVERGRSLDSIITQYLATVKPMYHQFVEPTKRYADI 186
>sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (strain DSM 20016) GN=udk
PE=3 SV=1
Length = 218
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 419 LENKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSE------QVKDFK 469
++ PV++G+ G SGSGKT++++K+ + + ++++ ++Y+ + + K
Sbjct: 3 IQQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVN 62
Query: 470 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 529
YD + D L K ++D+R+ + ++P++D RS K + V E VII EG+ L
Sbjct: 63 YDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTRSD-KTVHV-EPTDVIILEGILIL 120
Query: 530 HPE-IRKSLDLWIAV-----VGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI 583
E +R +D+ + V + + V+R +S + ++Q + TV PM+ Q +
Sbjct: 121 DDERLRDLMDIKVYVDTDDDIRIIRRIQRDMVERGRS-LDSIITQ--YLATVKPMYHQFV 177
Query: 584 EP 585
EP
Sbjct: 178 EP 179
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
+ D D L++ L DL K +P++DY Q R K + + V+I++G L D RLR
Sbjct: 68 AFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLR 126
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 129
L+DI+V V +I ++Q D+ + SLDS+I ++ P++ + +EP +A I
Sbjct: 127 DLMDIKVYVDTDDDIRIIRRIQRDMVERGRSLDSIITQYLATVKPMYHQFVEPTKRYADI 186
>sp|Q8CSB2|URK_STAES Uridine kinase OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=udk PE=3 SV=1
Length = 207
Score = 63.5 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 457 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSE 516
+S+ E+ + YD + D LL N+ D+RNG+ +VP +D RS KE +
Sbjct: 45 QSHLTFEERLETNYDHPFAFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTRS--KETIAFD 102
Query: 517 DCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMM 573
VII EG++AL + +R +D+ I V ++ R+ RD G M N +
Sbjct: 103 PKDVIIVEGIFALENNTLRDMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLN 162
Query: 574 TVFPMFQQHIEPHLVHAHLKI 594
V PM +Q IEP HA + I
Sbjct: 163 VVRPMHEQFIEPTKKHADIII 183
Score = 57.4 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LR 74
+ D D L+ NL+DL GK +P +DY Q R + I V+IV+G +AL+ LR
Sbjct: 63 AFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTR-SKETIAFDPKDVIIVEGIFALENNTLR 121
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 129
++D+++ V ++ ++ D + +++S+I+ + P+ + IEP HA I
Sbjct: 122 DMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLNVVRPMHEQFIEPTKKHADI 181
Query: 130 RI 131
I
Sbjct: 182 II 183
>sp|Q5HNT9|URK_STAEQ Uridine kinase OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=udk PE=3 SV=1
Length = 207
Score = 63.5 bits (153), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 457 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSE 516
+S+ E+ + YD + D LL N+ D+RNG+ +VP +D RS KE +
Sbjct: 45 QSHLTFEERLETNYDHPFAFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTRS--KETIAFD 102
Query: 517 DCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMM 573
VII EG++AL + +R +D+ I V ++ R+ RD G M N +
Sbjct: 103 PKDVIIVEGIFALENNTLRDMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLN 162
Query: 574 TVFPMFQQHIEPHLVHAHLKI 594
V PM +Q IEP HA + I
Sbjct: 163 VVRPMHEQFIEPTKKHADIII 183
Score = 57.4 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LR 74
+ D D L+ NL+DL GK +P +DY Q R + I V+IV+G +AL+ LR
Sbjct: 63 AFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTR-SKETIAFDPKDVIIVEGIFALENNTLR 121
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 129
++D+++ V ++ ++ D + +++S+I+ + P+ + IEP HA I
Sbjct: 122 DMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLNVVRPMHEQFIEPTKKHADI 181
Query: 130 RI 131
I
Sbjct: 182 II 183
>sp|Q1WTY6|URK_LACS1 Uridine kinase OS=Lactobacillus salivarius (strain UCC118) GN=udk
PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 420 ENKGLPVIVGIGGPSGSGKTSLAHKM-ANIVGCEVVSLE--SYFKSEQVKDFK------Y 470
ENK PVI+G+ G SGSGKT+++ + + G ++ L+ SY+ + F+ Y
Sbjct: 5 ENK--PVIIGVTGGSGSGKTTVSRAIFEQLHGHSLLMLQEDSYYNDQSDMPFEERIKTNY 62
Query: 471 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 530
D ++ D LL K + D+ + + + PI+D RS E+E E VII EG+ L+
Sbjct: 63 DHPNAFDTELLVKQLKDLLDWKTIEKPIYDYTEHTRSS--EVEKVEPKEVIILEGILVLN 120
Query: 531 -PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
P +R +D+ I V +I R+QRD G + + TV PM+ Q IEP
Sbjct: 121 DPALRDLMDIKIFVDTDDDIRIIRRIQRDIEERGRSLQSVIDQYKSTVKPMYHQFIEP 178
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
++ D + LV+ L+DL + K P++DY + R S+V K V+I++G L D L
Sbjct: 66 NAFDTELLVKQLKDLLDWKTIEKPIYDYTEHTR-SSEVEKVEPKEVIILEGILVLNDPAL 124
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R L+DI++ V +I ++Q DI + SL S+ID ++ P++ + IEP +A
Sbjct: 125 RDLMDIKIFVDTDDDIRIIRRIQRDIEERGRSLQSVIDQYKSTVKPMYHQFIEPTKRYAD 184
Query: 129 I 129
I
Sbjct: 185 I 185
>sp|B1H116|UCK2_XENTR Uridine-cytidine kinase 2 OS=Xenopus tropicalis GN=uck2 PE=2 SV=1
Length = 261
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 411 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYF 460
S QA+ G P ++G+ G + SGK+S+ K+ ++G ++S +S++
Sbjct: 5 SEQALPKHSPQNGQPFLIGVSGGTASGKSSVCSKIVQLLGQNEVDHHQKQVVMLSQDSFY 64
Query: 461 -------KSEQVK-DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKEL 512
KS+ +K F +D + D L+ K + ++ G+ ++P++D T +R +E
Sbjct: 65 RILTPEQKSKALKGQFNFDHPDAFDNELILKTLKELMEGKTVQIPVYDFVTHSRK--EET 122
Query: 513 EVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 569
V V++FEG+ A + EIR + + V + L RV RD + G + Q
Sbjct: 123 LVVYPADVVLFEGILAFYMQEIRDMFQMKLFVDTDADTRLSRRVLRDINERGRDLEQVLT 182
Query: 570 DIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 603
+ V P F++ P +A + I D V++
Sbjct: 183 QYITFVKPAFEEFCLPTKKYADVIIPRGADNVVA 216
>sp|B6EIY7|URK_ALISL Uridine kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=udk
PE=3 SV=1
Length = 215
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 426 VIVGIGGPSGSGKTSLAHKMANIVGCEV-------VSLESYFK-------SEQVKDFKYD 471
+IVGI G S SGK+ +A + N + +V ++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
++LD LLS+++ + G +P + R+ ++EV VII EG+ L
Sbjct: 69 HPNALDHRLLSEHLEQLMRGEAVNIPTYSYTEHTRTS--DVEVMTPKKVIILEGILLLTD 126
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRAKRDVEERGRSMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 589 HA 590
HA
Sbjct: 187 HA 188
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+++D L ++L+ L G+ IP + Y + R S V V+I++G L D RL
Sbjct: 71 NALDHRLLSEHLEQLMRGEAVNIPTYSYTEHTRT-SDVEVMTPKKVIILEGILLLTDPRL 129
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R+L+ V + + L+ + + D+ + S++S+ + ++ P+F + I+P HA
Sbjct: 130 RNLMHASVFMDTPLDICLLRRAKRDVEERGRSMESVFEQYQKTVRPMFMQFIDPSKQHAD 189
Query: 129 I 129
I
Sbjct: 190 I 190
>sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=udk PE=3 SV=1
Length = 211
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 425 PVIVGIGGPSGSGKTSLAHKM---ANIVGCEVVSLESYFKS------EQVKDFKYDDFSS 475
P+I+G+ G +GSGKT++A ++ N ++ ++Y+K E+ YD +
Sbjct: 5 PIIIGVAGGTGSGKTTVAKEIFYQFNEKSIVLIEQDAYYKDQSQLSLEERLQTNYDHPLA 64
Query: 476 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IR 534
D LL +++ + NG+ + P++D + RS E+ + E VII EG+ L E +R
Sbjct: 65 FDNDLLIEHLHSLLNGQAIEKPVYDYKLHTRSN--EVILVEPKDVIILEGILLLEDERLR 122
Query: 535 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
+ +D+ + V +I R+ RD G + V PM Q IEP
Sbjct: 123 ELMDIKLFVDTDADIRIIRRMVRDIRERGRTLESVIEQYTKVVRPMHMQFIEP 175
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
+ D D L+++L L G+ P++DY+ R ++VI V+I++G L D RLR
Sbjct: 64 AFDNDLLIEHLHSLLNGQAIEKPVYDYKLHTR-SNEVILVEPKDVIILEGILLLEDERLR 122
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 129
L+DI++ V +I ++ DI + +L+S+I+ + P+ + IEP +A +
Sbjct: 123 ELMDIKLFVDTDADIRIIRRMVRDIRERGRTLESVIEQYTKVVRPMHMQFIEPTKRYADV 182
Query: 130 RI 131
I
Sbjct: 183 II 184
>sp|B9LED5|URK_CHLSY Uridine kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM
637 / Y-400-fl) GN=udk PE=3 SV=1
Length = 209
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS---LESYFKS------EQVKDFKYDDFSS 475
P+I+G+ G S SGKTS+A + VG + ++ + Y+K E+ F +D +
Sbjct: 5 PIIIGVAGGSASGKTSVAQAILQRVGADRIAHIDHDRYYKDLSHLPLEERAKFNFDHPDA 64
Query: 476 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIR 534
LD LL ++ + G+ +P +D T R + E E VI+ EG+ + P +R
Sbjct: 65 LDNDLLVAHLDALCAGQSVDLPTYDYATYVR--LPQTERIEPRPVILVEGILIFYEPVLR 122
Query: 535 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
+ + + + V I R++RD G + + TV PM + +EP
Sbjct: 123 RRMQIKLFVDTDADLRFIRRLRRDIVERGRSVESVIEQYLATVRPMHLEFVEP 175
>sp|A9WCC8|URK_CHLAA Uridine kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM
635 / J-10-fl) GN=udk PE=3 SV=1
Length = 209
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS---LESYFKS------EQVKDFKYDDFSS 475
P+I+G+ G S SGKTS+A + VG + ++ + Y+K E+ F +D +
Sbjct: 5 PIIIGVAGGSASGKTSVAQAILQRVGADRIAHIDHDRYYKDLSHLPLEERAKFNFDHPDA 64
Query: 476 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIR 534
LD LL ++ + G+ +P +D T R + E E VI+ EG+ + P +R
Sbjct: 65 LDNDLLVAHLDALCAGQSVDLPTYDYATYVR--LPQTERIEPRPVILVEGILIFYEPVLR 122
Query: 535 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
+ + + + V I R++RD G + + TV PM + +EP
Sbjct: 123 RRMQIKLFVDTDADLRFIRRLRRDIVERGRSVESVIEQYLATVRPMHLEFVEP 175
>sp|B9E6Y9|URK_MACCJ Uridine kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=udk
PE=3 SV=1
Length = 206
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 438 KTSLAHK-MANIVGCEVVSLES--YFKSEQVKDFK------YDDFSSLDLSLLSKNISDI 488
KTS+ K + N+ G V +E Y+K++ F+ YD + D LL +N+ D+
Sbjct: 17 KTSVTSKILKNLEGYSVALIEQDYYYKNQDHLTFEERLKTNYDHPFAFDNELLIQNLKDL 76
Query: 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGV 547
RNG+ +VP +D RS ++ E VII EG++AL + +R +D+ I V
Sbjct: 77 RNGKTVEVPTYDYSNHTRS--EKTITFEPKDVIIVEGIFALENSNLRDLMDVKIYVDTDA 134
Query: 548 HSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKI 594
++ R+ RD G M + + V PM Q IEP +A + I
Sbjct: 135 DLRILRRIVRDIEERGRTMESVIDQYLTVVRPMHNQFIEPTKKYADIII 183
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLR 74
+ D + L+QNL+DL GK +P +DY R K I V+IV+G +AL+ + LR
Sbjct: 63 AFDNELLIQNLKDLRNGKTVEVPTYDYSNHTR-SEKTITFEPKDVIIVEGIFALENSNLR 121
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 129
L+D+++ V ++ ++ DI + +++S+ID + P+ + IEP +A I
Sbjct: 122 DLMDVKIYVDTDADLRILRRIVRDIEERGRTMESVIDQYLTVVRPMHNQFIEPTKKYADI 181
Query: 130 RI 131
I
Sbjct: 182 II 183
>sp|B0UT65|URK_HAES2 Uridine kinase OS=Haemophilus somnus (strain 2336) GN=udk PE=3 SV=1
Length = 213
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 439 TSLAHKMANIVGCE---VVSLESYFKSEQVKDFK------YDDFSSLDLSLLSKNISDIR 489
+++ ++ N +GCE +V+ +SY+K + F+ YD +S+D LL +++ D++
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPNSMDRDLLIQHLCDLK 83
Query: 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVH 548
G+ +P++ R+ +E+ E VII EG+ L E IR+ +++ + V +
Sbjct: 84 KGKAVDIPVYSYVEHTRT--QEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTPLD 141
Query: 549 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
I R+QRD G + + TV PMF Q IEP
Sbjct: 142 ICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEP 180
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+S+D D L+Q+L DL +GK IP++ Y + R +V + V+I++G L D R+
Sbjct: 68 NSMDRDLLIQHLCDLKKGKAVDIPVYSYVEHTR-TQEVTRFEPKKVIILEGILLLTDERI 126
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R +++ V V + I ++Q D+ + SL S+ID ++ P+F + IEP +A
Sbjct: 127 RQEVNMSVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEPSKQYAD 186
Query: 129 I 129
I
Sbjct: 187 I 187
>sp|Q0I2Y9|URK_HAES1 Uridine kinase OS=Haemophilus somnus (strain 129Pt) GN=udk PE=3
SV=1
Length = 213
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 439 TSLAHKMANIVGCE---VVSLESYFKSEQVKDFK------YDDFSSLDLSLLSKNISDIR 489
+++ ++ N +GCE +V+ +SY+K + F+ YD +S+D LL +++ D++
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPNSMDRDLLIQHLCDLK 83
Query: 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVH 548
G+ +P++ R+ +E+ E VII EG+ L E IR+ +++ + V +
Sbjct: 84 KGKAVDIPVYSYVEHTRT--QEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTPLD 141
Query: 549 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
I R+QRD G + + TV PMF Q IEP
Sbjct: 142 ICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEP 180
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+S+D D L+Q+L DL +GK IP++ Y + R +V + V+I++G L D R+
Sbjct: 68 NSMDRDLLIQHLCDLKKGKAVDIPVYSYVEHTR-TQEVTRFEPKKVIILEGILLLTDERI 126
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R +++ V V + I ++Q D+ + SL S+ID ++ P+F + IEP +A
Sbjct: 127 RQEVNMSVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEPSKQYAD 186
Query: 129 I 129
I
Sbjct: 187 I 187
>sp|Q9BZX2|UCK2_HUMAN Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1
Length = 261
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 466
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK 75
Query: 467 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 522
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRK--EETVTVYPADVVL 133
Query: 523 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 579
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 580 QQHIEPHLVHAHLKI 594
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-L 73
D+ D + +++ L+++TEGK IP++D+ +R + + + VV+ +G A ++ +
Sbjct: 87 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVTVYPADVVLFEGILAFYSQEV 145
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDLHHAQ 128
R L +++ V L +V DI + L I + P F + P +A
Sbjct: 146 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 205
Query: 129 IRI 131
+ I
Sbjct: 206 VII 208
>sp|Q8T154|UCKB_DICDI Uridine-cytidine kinase B OS=Dictyostelium discoideum GN=udkB PE=3
SV=2
Length = 243
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFK------SEQVKDFKYDDFSS 475
P I+G+ G + SGKT++ ++ + + ++ L+S+++ E V + +D +
Sbjct: 15 PFIIGVTGGTASGKTTVCDEIMKRLENKRIAIICLDSFYRPLSKEDRETVASYNFDHPDA 74
Query: 476 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IR 534
D SL+ + D+++G+ ++P + ++ +R +E D VI+FEG+ + + + +R
Sbjct: 75 FDWSLVENALRDLKDGKDIEIPTYCFKSHSR--LEETVGLGDVDVILFEGILSFYTQSLR 132
Query: 535 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF--PMFQQHIEPHLVHAHL 592
+ +D+ I V + L RV RD + G + F P F +I P HA +
Sbjct: 133 EQMDIKIFVDTDSDTRLSRRVMRDIAERGRSLEGVLYQYEKFVKPAFDDYILPTKKHADV 192
Query: 593 KIRNDFDPVLS 603
I D V++
Sbjct: 193 IIPRGADNVVA 203
Score = 37.0 bits (84), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-L 73
D+ D+ + L+DL +GKD IP + ++ +R+ V G V++ +G + + L
Sbjct: 73 DAFDWSLVENALRDLKDGKDIEIPTYCFKSHSRLEETVGLG-DVDVILFEGILSFYTQSL 131
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQ 128
R +DI++ V L +V DI + SL+ ++ + P F +I P HA
Sbjct: 132 REQMDIKIFVDTDSDTRLSRRVMRDIAERGRSLEGVLYQYEKFVKPAFDDYILPTKKHAD 191
Query: 129 IRI 131
+ I
Sbjct: 192 VII 194
>sp|A6TBG6|URK_KLEP7 Uridine kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=udk PE=3 SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VIVGI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
SS+D SLL +++ +++G+ ++P++ R+ + V E VII EG+ L
Sbjct: 68 HPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHV-EPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
S+D L Q+LQ L G+ +P++ Y + R + I V+I++G L DARLR
Sbjct: 71 SMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPN-TIHVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+ L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 NELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|B5XPC8|URK_KLEP3 Uridine kinase OS=Klebsiella pneumoniae (strain 342) GN=udk PE=3
SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VIVGI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
SS+D SLL +++ +++G+ ++P++ R+ + V E VII EG+ L
Sbjct: 68 HPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHV-EPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
S+D L Q+LQ L G+ +P++ Y + R + I V+I++G L DARLR
Sbjct: 71 SMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPN-TIHVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+ L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 NELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|Q9QYG8|UCK2_RAT Uridine-cytidine kinase 2 OS=Rattus norvegicus GN=Uck2 PE=2 SV=2
Length = 261
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 466
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYRVLTSEQKAK 75
Query: 467 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 522
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRK--EETVTIYPADVVL 133
Query: 523 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 579
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 580 QQHIEPHLVHAHLKI 594
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-L 73
D+ D + + + L+++TEGK IP++D+ +R + + + VV+ +G A ++ +
Sbjct: 87 DAFDNELIFKTLKEITEGKTVQIPVYDFVSHSR-KEETVTIYPADVVLFEGILAFYSQEV 145
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDLHHAQ 128
R L +++ V L +V DI + L I + P F + P +A
Sbjct: 146 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 205
Query: 129 IRI 131
+ I
Sbjct: 206 VII 208
>sp|Q99PM9|UCK2_MOUSE Uridine-cytidine kinase 2 OS=Mus musculus GN=Uck2 PE=1 SV=1
Length = 261
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 466
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYRVLTSEQKAK 75
Query: 467 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 522
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRK--EETVTIYPADVVL 133
Query: 523 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 579
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 580 QQHIEPHLVHAHLKI 594
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 33.5 bits (75), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-L 73
D+ D + + + L+++TEGK IP++D+ +R + + + VV+ +G A ++ +
Sbjct: 87 DAFDNELIFKTLKEITEGKTVQIPVYDFVSHSR-KEETVTIYPADVVLFEGILAFYSQEV 145
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDLHHAQ 128
R L +++ V L +V DI + L I + P F + P +A
Sbjct: 146 RDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 205
Query: 129 IRI 131
+ I
Sbjct: 206 VII 208
>sp|Q6D7B4|URK_ERWCT Uridine kinase OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=udk PE=3 SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ + VG + V+S +SY+K E+VK YD
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
SS+D SLL K++ +++G+ +VP + R +E E VII EG+ L
Sbjct: 68 HPSSMDHSLLIKHLQMLKSGQAIEVPQYSYVEHTRK--QETVHIELKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
+R ++ I V + L+ R++RD + G M TV PMF Q IEP
Sbjct: 126 ARLRNEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEP 182
>sp|B5FG51|URK_VIBFM Uridine kinase OS=Vibrio fischeri (strain MJ11) GN=udk PE=3 SV=1
Length = 215
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 426 VIVGIGGPSGSGKTSLAHKMANIVGCE-------VVSLESYFK-------SEQVKDFKYD 471
+IVGI G S SGK+ +A + N + + V++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
++LD LL +++ + G +P + R+ E++V VII EG+ L
Sbjct: 69 HPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTS--EVDVMTPKKVIILEGILLLTD 126
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 589 HA 590
HA
Sbjct: 187 HA 188
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+++D + L ++L+ L G+ IP + Y + R S+V V+I++G L D RL
Sbjct: 71 NALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRT-SEVDVMTPKKVIILEGILLLTDPRL 129
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R+L+ V + + L+ + + D+ + +++S+ + ++ P+F + I+P HA
Sbjct: 130 RNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQHAD 189
Query: 129 I 129
I
Sbjct: 190 I 190
>sp|Q5E3Z9|URK_VIBF1 Uridine kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=udk PE=3 SV=1
Length = 215
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 426 VIVGIGGPSGSGKTSLAHKMANIVGCE-------VVSLESYFK-------SEQVKDFKYD 471
+IVGI G S SGK+ +A + N + + V++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
++LD LL +++ + G +P + R+ E++V VII EG+ L
Sbjct: 69 HPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTS--EVDVMTPKKVIILEGILLLTD 126
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 588
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 589 HA 590
HA
Sbjct: 187 HA 188
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+++D + L ++L+ L G+ IP + Y + R S+V V+I++G L D RL
Sbjct: 71 NALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRT-SEVDVMTPKKVIILEGILLLTDPRL 129
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 128
R+L+ V + + L+ + + D+ + +++S+ + ++ P+F + I+P HA
Sbjct: 130 RNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQHAD 189
Query: 129 I 129
I
Sbjct: 190 I 190
>sp|Q5SKR5|URK_THET8 Uridine kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 /
DSM 579) GN=udk PE=1 SV=1
Length = 211
Score = 60.8 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFKS------EQVKDFKYDDFSSL 476
P ++GI G + SGKT+LA +A +G V + ++ Y+K E+ YD +
Sbjct: 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65
Query: 477 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-EIRK 535
DL+L ++ + G ++P++D RS + V+I EG+ L+P E+R
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRR--TPVRPAPVVILEGILVLYPKELRD 123
Query: 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLK 593
+DL + V I R++RD G + + V PM +EP +A +
Sbjct: 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVI 183
Query: 594 I-RNDFDPV 601
+ R +PV
Sbjct: 184 VPRGGQNPV 192
>sp|Q72L53|URK_THET2 Uridine kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=udk PE=3 SV=1
Length = 211
Score = 60.8 bits (146), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFKS------EQVKDFKYDDFSSL 476
P ++GI G + SGKT+LA +A +G V + ++ Y+K E+ YD +
Sbjct: 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65
Query: 477 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-EIRK 535
DL+L ++ + G ++P++D RS + V+I EG+ L+P E+R
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRR--TPVRPAPVVILEGILVLYPKELRD 123
Query: 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLK 593
+DL + V I R++RD G + + V PM +EP +A +
Sbjct: 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVI 183
Query: 594 I-RNDFDPV 601
+ R +PV
Sbjct: 184 VPRGGQNPV 192
>sp|A4WCB6|URK_ENT38 Uridine kinase OS=Enterobacter sp. (strain 638) GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ + VG E V+ +SY+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELRDQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
+++D SLL +++ I+NG +P++ R+ ++ E VII EG+ L
Sbjct: 68 HPNAMDHSLLFQHLQMIKNGTPIDLPVYSYVDHTRT--QDTIHIEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R++++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLREAMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
>sp|P0A8F7|URK_SHIFL Uridine kinase OS=Shigella flexneri GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D L+++LQ L G +P++ Y + R+ + + V+I++G L DARLR
Sbjct: 71 AMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 DELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|P0A8F4|URK_ECOLI Uridine kinase OS=Escherichia coli (strain K12) GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D L+++LQ L G +P++ Y + R+ + + V+I++G L DARLR
Sbjct: 71 AMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 DELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|P0A8F5|URK_ECOL6 Uridine kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D L+++LQ L G +P++ Y + R+ + + V+I++G L DARLR
Sbjct: 71 AMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 DELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|P0A8F6|URK_ECO57 Uridine kinase OS=Escherichia coli O157:H7 GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D L+++LQ L G +P++ Y + R+ + + V+I++G L DARLR
Sbjct: 71 AMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 DELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|C0ZAS6|URK_BREBN Uridine kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=udk PE=3 SV=1
Length = 214
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL---ESYFKS------EQVKDFKYDDF 473
G PV++G+ G SGSGKT++A ++ + V++ +SY+K E+ YD
Sbjct: 2 GNPVLIGVAGGSGSGKTTVAKELYRQFQNDSVTMIEQDSYYKDQSHLSPEERALTNYDHP 61
Query: 474 SSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE- 532
+ D LL ++ ++ G+ + PI+D + R ++++V + VII EG+ L E
Sbjct: 62 FAFDNDLLLAHLQELMQGKAIQKPIYDFKVHNRKP-EQIQV-DPKDVIILEGMLILEDER 119
Query: 533 IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
IR +D+ + V + R+ RD G + + V PM Q IEP
Sbjct: 120 IRNLMDIKVYVDTDADVRIARRIVRDIEERGRSLDSVVTQYLNVVRPMHLQFIEP 174
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
+ D D L+ +LQ+L +GK P++D++ NR + I+ V+I++G L D R+R
Sbjct: 63 AFDNDLLLAHLQELMQGKAIQKPIYDFKVHNRKPEQ-IQVDPKDVIILEGMLILEDERIR 121
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
+L+DI+V V + ++ DI + SLDS++ + + P+ + IEP +A +
Sbjct: 122 NLMDIKVYVDTDADVRIARRIVRDIEERGRSLDSVVTQYLNVVRPMHLQFIEPTKRYADV 181
Query: 130 RI 131
I
Sbjct: 182 II 183
>sp|Q7SYM0|UCK2A_DANRE Uridine-cytidine kinase 2-A OS=Danio rerio GN=uck2a PE=2 SV=1
Length = 261
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 23/182 (12%)
Query: 425 PVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYF-------KSEQVK- 466
P ++G+ G + SGK+S+ K+ ++G ++S +S++ K++ +K
Sbjct: 22 PFLIGVAGGTASGKSSVCGKIMELLGQNKIDHHQRQVAILSQDSFYRVLTPEQKAKALKG 81
Query: 467 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 526
F +D + D L+ K + +I GR ++P++D T +R +E V++FEG+
Sbjct: 82 QFNFDHPDAFDNELIVKTLCEIMEGRTVQIPVYDFVTHSRK--EETVTVYPADVVLFEGI 139
Query: 527 YALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHI 583
+ EIR + + V + L RV RD S G + Q N + V P F++
Sbjct: 140 LMFYSQEIRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQVLNQYITFVKPAFEEFC 199
Query: 584 EP 585
P
Sbjct: 200 LP 201
>sp|C6DCI6|URK_PECCP Uridine kinase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=udk PE=3 SV=1
Length = 213
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ + VG + V+S +SY+K E+VK YD
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
SS+D SLL K++ ++ G+ +VP + R +E E VII EG+ L
Sbjct: 68 HPSSMDHSLLLKHLQMLKAGQAIEVPQYSYVEHTRK--QETVHIELKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 585
+R ++ I V + L+ R++RD + G M TV PMF Q IEP
Sbjct: 126 ARLRDEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEP 182
>sp|B5RBW3|URK_SALG2 Uridine kinase OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=udk PE=3 SV=1
Length = 213
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFKS------EQVKDFKYDD 472
VI+GI G S SGK+ +L ++ VG E V+ +SY+K E++ YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEELVKTNYDH 68
Query: 473 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HP 531
+++D SLL +++ ++ G ++P++ R +E E VII EG+ L
Sbjct: 69 PNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR--MQETVRVEPKKVIILEGILLLTDA 126
Query: 532 EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R+ ++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 127 RLREEMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+++D L Q+LQ L G +P++ Y + R+ + ++ V+I++G L DARL
Sbjct: 70 NAMDHSLLFQHLQALKRGSAIELPVYSYVEHTRM-QETVRVEPKKVIILEGILLLTDARL 128
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQ 128
R ++ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A
Sbjct: 129 REEMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYAD 188
Query: 129 I 129
I
Sbjct: 189 I 189
>sp|A8GC40|URK_SERP5 Uridine kinase OS=Serratia proteamaculans (strain 568) GN=udk PE=3
SV=1
Length = 213
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ + VG E V+ +SY+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELRDQVGDEHIGVIPEDSYYKDQTHLTMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 531
S++D +LL +++ +++G+ ++P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHNLLFQHLQMLKSGKAIELPLYSYTEHTRK--KETIHLEPKKVIILEGILLLTD 125
Query: 532 -EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R+ ++ I V + L+ R++RD + G S + +M TV PMF Q I+P
Sbjct: 126 IRLRQEMNFSIFVDTPLDICLMRRMKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIDP 182
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D + L Q+LQ L GK +P++ Y + R + I V+I++G L D RLR
Sbjct: 71 AMDHNLLFQHLQMLKSGKAIELPLYSYTEHTR-KKETIHLEPKKVIILEGILLLTDIRLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
++ + V + L+ +++ D+ + S+DS++ ++ P+F + I+P +A I
Sbjct: 130 QEMNFSIFVDTPLDICLMRRMKRDVNERGRSMDSVMAQYQKTVRPMFLQFIDPSKQYADI 189
>sp|B7LV30|URK_ESCF3 Uridine kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=udk PE=3 SV=1
Length = 213
Score = 59.7 bits (143), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVKVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 16 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLR 74
++D L+++LQ L G +P++ Y + R+ + +K V+I++G L DARLR
Sbjct: 71 AMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVKVEPKKVIILEGILLLTDARLR 129
Query: 75 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 129
L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A I
Sbjct: 130 DELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADI 189
>sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=udk PE=3 SV=1
Length = 213
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 426 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 471
VI+GI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 530
+++D SLL +++ ++ G ++P++ R +E E VII EG+ L
Sbjct: 68 HPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR--MQETVRVEPKKVIILEGILLLTD 125
Query: 531 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 585
+R+ ++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLREEMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 15 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 73
+++D L Q+LQ L G +P++ Y + R+ + ++ V+I++G L DARL
Sbjct: 70 NAMDHSLLFQHLQALKRGSAIELPVYSYVEHTRM-QETVRVEPKKVIILEGILLLTDARL 128
Query: 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQ 128
R ++ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP +A
Sbjct: 129 REEMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYAD 188
Query: 129 I 129
I
Sbjct: 189 I 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 280,923,999
Number of Sequences: 539616
Number of extensions: 12119582
Number of successful extensions: 41732
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 40960
Number of HSP's gapped (non-prelim): 681
length of query: 770
length of database: 191,569,459
effective HSP length: 125
effective length of query: 645
effective length of database: 124,117,459
effective search space: 80055761055
effective search space used: 80055761055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)