Query 004177
Match_columns 770
No_of_seqs 628 out of 3554
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 18:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 9.4E-77 2E-81 667.9 27.7 376 390-770 30-408 (656)
2 PLN02318 phosphoribulokinase/u 100.0 3.6E-57 7.8E-62 509.6 24.0 327 1-335 97-440 (656)
3 COG1437 CyaB Adenylate cyclase 100.0 1.1E-32 2.4E-37 269.1 14.6 141 156-305 22-177 (178)
4 COG0572 Udk Uridine kinase [Nu 100.0 7.7E-33 1.7E-37 280.8 13.9 175 423-599 6-192 (218)
5 KOG2878 Predicted kinase [Gene 100.0 1.2E-31 2.5E-36 263.6 6.0 223 423-672 29-280 (282)
6 TIGR00318 cyaB adenylyl cyclas 100.0 1.7E-28 3.8E-33 244.7 15.6 138 157-303 23-173 (174)
7 PTZ00301 uridine kinase; Provi 100.0 1.5E-28 3.1E-33 252.1 14.5 174 424-599 2-191 (210)
8 PF00485 PRK: Phosphoribulokin 100.0 2.1E-28 4.5E-33 248.0 12.0 170 427-599 1-190 (194)
9 COG0572 Udk Uridine kinase [Nu 100.0 1.5E-28 3.2E-33 249.6 10.8 134 1-135 42-191 (218)
10 PLN03046 D-glycerate 3-kinase; 99.9 1.7E-28 3.7E-33 268.6 8.9 232 410-672 192-458 (460)
11 PLN02348 phosphoribulokinase 99.9 1E-26 2.2E-31 254.7 18.4 231 418-666 42-305 (395)
12 PLN02796 D-glycerate 3-kinase 99.9 1.3E-27 2.9E-32 258.4 8.0 231 410-671 80-345 (347)
13 cd02029 PRK_like Phosphoribulo 99.9 2.5E-26 5.4E-31 240.1 12.9 168 427-597 1-202 (277)
14 cd02028 UMPK_like Uridine mono 99.9 5.2E-25 1.1E-29 220.7 12.4 168 427-595 1-178 (179)
15 PRK05439 pantothenate kinase; 99.9 1.5E-24 3.3E-29 233.3 14.7 230 365-602 14-303 (311)
16 PTZ00301 uridine kinase; Provi 99.9 1.1E-24 2.4E-29 223.5 12.3 135 1-136 41-191 (210)
17 COG4240 Predicted kinase [Gene 99.9 8.7E-26 1.9E-30 226.5 4.1 222 421-668 46-292 (300)
18 PRK15453 phosphoribulokinase; 99.9 2.8E-24 6.1E-29 226.3 14.3 173 423-596 3-207 (290)
19 cd02025 PanK Pantothenate kina 99.9 1.8E-24 3.9E-29 223.7 11.8 172 427-599 1-212 (220)
20 PRK05480 uridine/cytidine kina 99.9 1.2E-23 2.5E-28 215.4 14.4 175 422-598 3-189 (209)
21 PF00485 PRK: Phosphoribulokin 99.9 5.1E-24 1.1E-28 215.9 9.8 126 9-135 59-189 (194)
22 cd07890 CYTH-like_AC_IV-like A 99.9 2.4E-23 5.1E-28 206.8 14.1 136 157-301 21-169 (169)
23 TIGR00554 panK_bact pantothena 99.9 5.2E-23 1.1E-27 220.1 14.4 179 422-601 59-282 (290)
24 PRK07429 phosphoribulokinase; 99.9 2.1E-22 4.6E-27 219.2 16.0 209 421-647 4-222 (327)
25 TIGR00235 udk uridine kinase. 99.9 6E-22 1.3E-26 202.8 14.6 175 422-598 3-189 (207)
26 cd02023 UMPK Uridine monophosp 99.9 6.2E-22 1.3E-26 200.9 13.5 172 427-600 1-184 (198)
27 cd02029 PRK_like Phosphoribulo 99.9 3.1E-22 6.7E-27 209.4 10.8 124 9-133 58-201 (277)
28 cd02026 PRK Phosphoribulokinas 99.9 9.9E-22 2.1E-26 209.5 14.1 169 427-598 1-178 (273)
29 PRK06696 uridine kinase; Valid 99.8 1.3E-20 2.8E-25 195.2 15.1 177 421-598 18-211 (223)
30 cd02028 UMPK_like Uridine mono 99.8 1.1E-20 2.4E-25 189.5 10.1 132 1-132 35-178 (179)
31 cd02024 NRK1 Nicotinamide ribo 99.8 2.5E-20 5.4E-25 187.8 11.7 156 427-582 1-179 (187)
32 PRK15453 phosphoribulokinase; 99.8 7.7E-20 1.7E-24 192.9 11.3 124 10-133 65-207 (290)
33 PLN02348 phosphoribulokinase 99.8 6.5E-20 1.4E-24 201.4 10.8 131 1-133 100-243 (395)
34 PRK07667 uridine kinase; Provi 99.8 2.2E-19 4.7E-24 182.2 12.7 172 416-595 8-193 (193)
35 cd02025 PanK Pantothenate kina 99.8 2.1E-19 4.5E-24 186.0 9.9 136 1-136 37-212 (220)
36 PRK09270 nucleoside triphospha 99.8 1.8E-18 3.8E-23 180.0 15.6 181 415-598 23-222 (229)
37 PRK05439 pantothenate kinase; 99.8 1E-18 2.3E-23 188.3 11.7 136 1-136 124-300 (311)
38 TIGR00554 panK_bact pantothena 99.7 3.8E-18 8.2E-23 182.8 10.5 136 1-136 100-280 (290)
39 PRK06547 hypothetical protein; 99.7 4.6E-17 1E-21 162.3 15.3 153 422-595 12-171 (172)
40 PRK05480 uridine/cytidine kina 99.7 1.7E-16 3.6E-21 162.6 12.2 126 9-135 58-189 (209)
41 COG1072 CoaA Panthothenate kin 99.7 1.8E-16 3.8E-21 165.3 12.3 190 365-562 10-236 (283)
42 PF01928 CYTH: CYTH domain; I 99.7 2.6E-16 5.6E-21 157.8 11.3 141 156-303 24-184 (185)
43 KOG4203 Armadillo/beta-Catenin 99.7 5.6E-17 1.2E-21 184.0 6.8 175 422-597 41-236 (473)
44 cd07758 ThTPase Thiamine Triph 99.7 4.1E-16 8.8E-21 158.7 12.1 125 157-292 20-180 (196)
45 cd07762 CYTH-like_Pase_1 Uncha 99.7 4.4E-16 9.4E-21 156.4 11.9 119 163-293 25-171 (180)
46 TIGR00235 udk uridine kinase. 99.6 1.1E-15 2.5E-20 156.5 12.3 127 9-136 58-190 (207)
47 cd02026 PRK Phosphoribulokinas 99.6 1.3E-15 2.8E-20 162.7 10.2 121 11-133 51-176 (273)
48 cd02023 UMPK Uridine monophosp 99.6 2.9E-15 6.4E-20 152.0 12.4 127 9-136 51-183 (198)
49 PRK07429 phosphoribulokinase; 99.6 6E-15 1.3E-19 161.0 10.3 120 12-133 61-185 (327)
50 KOG4203 Armadillo/beta-Catenin 99.6 2.6E-15 5.5E-20 170.6 6.4 129 8-136 104-238 (473)
51 PRK08233 hypothetical protein; 99.5 3.7E-13 7.9E-18 133.9 13.0 150 424-597 2-161 (182)
52 cd02024 NRK1 Nicotinamide ribo 99.4 1.5E-13 3.3E-18 138.7 7.2 119 1-119 31-179 (187)
53 TIGR00318 cyaB adenylyl cyclas 99.4 1.1E-12 2.4E-17 131.2 10.9 129 638-770 33-172 (174)
54 PRK06696 uridine kinase; Valid 99.4 9.1E-13 2E-17 136.7 10.4 135 1-135 58-211 (223)
55 COG1072 CoaA Panthothenate kin 99.4 1.3E-12 2.8E-17 136.7 7.9 91 12-102 140-236 (283)
56 KOG3308 Uncharacterized protei 99.3 1.6E-12 3.4E-17 129.6 7.5 155 424-587 3-175 (225)
57 PRK09270 nucleoside triphospha 99.3 7.2E-12 1.6E-16 130.5 12.3 127 10-137 88-224 (229)
58 cd02022 DPCK Dephospho-coenzym 99.3 5.8E-13 1.3E-17 133.5 3.4 158 427-599 1-176 (179)
59 PF01121 CoaE: Dephospho-CoA k 99.3 2E-12 4.2E-17 130.0 4.8 158 426-598 1-176 (180)
60 PRK14730 coaE dephospho-CoA ki 99.3 5E-12 1.1E-16 128.7 6.7 160 426-599 2-180 (195)
61 PRK07667 uridine kinase; Provi 99.2 1.9E-11 4E-16 124.2 9.0 113 15-132 77-193 (193)
62 PRK00081 coaE dephospho-CoA ki 99.2 1.6E-11 3.5E-16 124.8 6.8 159 425-598 2-178 (194)
63 PRK14733 coaE dephospho-CoA ki 99.2 2.5E-11 5.3E-16 124.3 7.9 161 423-598 4-182 (204)
64 KOG2702 Predicted panthothenat 99.2 2.4E-11 5.2E-16 123.2 7.3 139 422-561 116-283 (323)
65 PRK14734 coaE dephospho-CoA ki 99.2 3.3E-11 7.2E-16 123.2 7.4 161 426-599 2-180 (200)
66 PRK14732 coaE dephospho-CoA ki 99.1 2.8E-11 6E-16 123.4 5.0 158 427-599 1-176 (196)
67 PLN02422 dephospho-CoA kinase 99.1 6.4E-11 1.4E-15 123.4 7.0 161 426-599 2-180 (232)
68 cd07756 CYTH-like_Pase_CHAD Un 99.1 3.2E-10 7E-15 115.6 10.1 126 164-296 32-190 (197)
69 KOG2702 Predicted panthothenat 99.1 9E-11 1.9E-15 119.1 5.4 125 8-133 183-320 (323)
70 PTZ00451 dephospho-CoA kinase; 99.1 1.4E-10 2.9E-15 122.0 6.6 164 425-597 1-189 (244)
71 PRK14731 coaE dephospho-CoA ki 99.1 2.4E-10 5.3E-15 117.5 7.6 164 423-599 3-188 (208)
72 COG1120 FepC ABC-type cobalami 99.1 1.9E-11 4.1E-16 128.6 -0.8 172 424-634 27-235 (258)
73 PF13207 AAA_17: AAA domain; P 99.0 4.7E-10 1E-14 104.3 6.9 115 427-565 1-118 (121)
74 cd07374 CYTH-like_Pase CYTH-li 99.0 1.2E-09 2.7E-14 108.8 9.6 105 160-276 27-157 (174)
75 TIGR00152 dephospho-CoA kinase 99.0 5.4E-10 1.2E-14 112.8 6.4 160 427-599 1-178 (188)
76 COG0237 CoaE Dephospho-CoA kin 99.0 4.8E-10 1E-14 114.5 5.6 160 425-600 2-179 (201)
77 PRK06217 hypothetical protein; 99.0 1.7E-09 3.7E-14 108.7 9.5 106 426-561 2-108 (183)
78 PRK06547 hypothetical protein; 99.0 3.3E-09 7.1E-14 106.1 10.7 106 18-132 59-171 (172)
79 cd02020 CMPK Cytidine monophos 98.9 3.5E-09 7.6E-14 101.3 9.5 142 427-596 1-146 (147)
80 cd07891 CYTH-like_CthTTM-like_ 98.9 5.3E-09 1.2E-13 102.0 9.9 91 168-278 25-120 (148)
81 KOG3220 Similar to bacterial d 98.9 2.1E-09 4.5E-14 107.7 6.2 166 425-602 1-183 (225)
82 COG1102 Cmk Cytidylate kinase 98.9 7.1E-10 1.5E-14 107.6 2.2 112 426-559 1-113 (179)
83 PRK08118 topology modulation p 98.9 7.6E-09 1.6E-13 102.9 9.1 103 427-564 3-106 (167)
84 PRK03333 coaE dephospho-CoA ki 98.9 3.5E-09 7.6E-14 119.0 7.2 159 426-599 2-178 (395)
85 PRK07261 topology modulation p 98.8 1.2E-08 2.5E-13 101.9 9.6 105 427-566 2-108 (171)
86 PRK13477 bifunctional pantoate 98.8 5.5E-09 1.2E-13 120.1 6.9 131 424-558 283-442 (512)
87 COG1437 CyaB Adenylate cyclase 98.8 3.5E-08 7.5E-13 97.6 10.2 115 655-770 47-174 (178)
88 cd07761 CYTH-like_CthTTM-like 98.7 5.1E-08 1.1E-12 95.0 10.4 80 183-277 32-117 (146)
89 TIGR02173 cyt_kin_arch cytidyl 98.6 5.1E-08 1.1E-12 95.9 7.1 114 426-559 1-114 (171)
90 PRK01184 hypothetical protein; 98.6 6.1E-08 1.3E-12 97.2 6.9 121 425-559 1-126 (184)
91 COG3954 PrkB Phosphoribulokina 98.6 1.8E-07 3.9E-12 93.0 9.8 169 424-594 4-205 (289)
92 cd07890 CYTH-like_AC_IV-like A 98.6 2.2E-07 4.8E-12 92.5 10.1 114 655-769 45-169 (169)
93 PRK04182 cytidylate kinase; Pr 98.6 1.1E-07 2.3E-12 94.3 6.8 112 427-558 2-113 (180)
94 PRK06762 hypothetical protein; 98.5 3.7E-07 8E-12 89.9 8.8 106 425-559 2-118 (166)
95 TIGR00017 cmk cytidylate kinas 98.5 1.2E-07 2.6E-12 98.3 5.3 127 425-560 2-161 (217)
96 PRK00023 cmk cytidylate kinase 98.5 2E-07 4.3E-12 97.2 6.2 38 425-462 4-41 (225)
97 COG4604 CeuD ABC-type enteroch 98.4 1.1E-07 2.4E-12 95.4 2.9 172 424-634 26-232 (252)
98 PRK03839 putative kinase; Prov 98.4 1.1E-06 2.4E-11 87.9 9.2 100 427-558 2-101 (180)
99 PRK04040 adenylate kinase; Pro 98.3 1.3E-06 2.9E-11 88.6 8.7 38 425-462 2-41 (188)
100 PRK05541 adenylylsulfate kinas 98.3 1.1E-06 2.4E-11 87.5 7.4 38 422-459 4-46 (176)
101 PRK00131 aroK shikimate kinase 98.3 1E-06 2.2E-11 86.6 6.7 38 424-461 3-40 (175)
102 TIGR01359 UMP_CMP_kin_fam UMP- 98.3 2.3E-06 5.1E-11 85.5 8.5 117 427-559 1-126 (183)
103 PRK08356 hypothetical protein; 98.2 1.8E-06 4E-11 87.7 6.7 38 424-462 4-41 (195)
104 cd02019 NK Nucleoside/nucleoti 98.2 1.8E-06 3.8E-11 73.2 5.3 23 427-449 1-23 (69)
105 PRK13949 shikimate kinase; Pro 98.2 2.9E-06 6.3E-11 84.6 7.7 35 427-461 3-37 (169)
106 PRK00625 shikimate kinase; Pro 98.2 3E-06 6.6E-11 84.9 7.8 36 427-462 2-37 (173)
107 PLN02200 adenylate kinase fami 98.2 2.4E-06 5.1E-11 89.7 7.0 120 423-558 41-167 (234)
108 PRK09518 bifunctional cytidyla 98.2 2.9E-06 6.3E-11 102.6 8.4 131 426-560 2-178 (712)
109 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 8E-07 1.7E-11 93.5 2.6 167 424-632 29-232 (254)
110 PF13238 AAA_18: AAA domain; P 98.2 1.2E-06 2.6E-11 81.5 3.1 110 428-560 1-115 (129)
111 COG3638 ABC-type phosphate/pho 98.1 4.5E-07 9.8E-12 93.5 0.2 169 424-632 29-241 (258)
112 PLN03046 D-glycerate 3-kinase; 98.1 6.1E-06 1.3E-10 92.2 8.4 110 13-122 276-431 (460)
113 cd00464 SK Shikimate kinase (S 98.1 9.5E-06 2.1E-10 78.4 8.8 34 428-461 2-35 (154)
114 PRK14737 gmk guanylate kinase; 98.1 1E-05 2.3E-10 81.9 9.3 158 424-597 3-169 (186)
115 COG4559 ABC-type hemin transpo 98.1 9.9E-07 2.2E-11 89.6 1.6 44 590-633 193-236 (259)
116 TIGR01360 aden_kin_iso1 adenyl 98.1 1E-05 2.2E-10 80.9 8.6 117 425-558 3-128 (188)
117 PRK14527 adenylate kinase; Pro 98.0 1.3E-05 2.9E-10 81.1 8.4 120 423-559 4-134 (191)
118 COG0283 Cmk Cytidylate kinase 98.0 7.3E-06 1.6E-10 83.8 6.2 135 425-561 4-162 (222)
119 PRK11860 bifunctional 3-phosph 98.0 5.2E-06 1.1E-10 99.6 6.0 129 424-559 441-596 (661)
120 PRK08154 anaerobic benzoate ca 98.0 1.2E-05 2.6E-10 87.8 8.1 40 422-461 130-169 (309)
121 PRK08233 hypothetical protein; 98.0 1.9E-05 4.1E-10 78.4 8.7 99 13-134 56-161 (182)
122 PRK14530 adenylate kinase; Pro 98.0 1.1E-05 2.4E-10 83.2 7.0 118 427-558 5-127 (215)
123 cd01428 ADK Adenylate kinase ( 98.0 1.1E-05 2.5E-10 81.0 6.7 117 428-559 2-127 (194)
124 PRK05057 aroK shikimate kinase 98.0 3.1E-05 6.7E-10 77.4 9.5 37 425-461 4-40 (172)
125 TIGR03263 guanyl_kin guanylate 98.0 3.7E-05 8.1E-10 76.6 9.8 26 426-451 2-27 (180)
126 cd02021 GntK Gluconate kinase 97.9 6.5E-05 1.4E-09 72.6 10.9 36 427-462 1-36 (150)
127 PRK14528 adenylate kinase; Pro 97.9 3.3E-05 7.1E-10 78.2 9.1 118 427-559 3-130 (186)
128 PRK03731 aroL shikimate kinase 97.9 2.2E-05 4.9E-10 77.6 7.0 36 427-462 4-39 (171)
129 PRK12338 hypothetical protein; 97.9 4.9E-05 1.1E-09 82.9 10.0 39 424-462 3-41 (319)
130 PLN02796 D-glycerate 3-kinase 97.9 3.2E-05 6.9E-10 85.0 8.6 108 13-120 164-317 (347)
131 PF13671 AAA_33: AAA domain; P 97.9 1.1E-05 2.5E-10 76.8 4.3 36 427-462 1-36 (143)
132 PRK02496 adk adenylate kinase; 97.9 3.6E-05 7.7E-10 77.3 8.0 37 426-462 2-38 (184)
133 COG1428 Deoxynucleoside kinase 97.9 1.9E-05 4.2E-10 80.5 5.9 66 536-606 126-198 (216)
134 TIGR01313 therm_gnt_kin carboh 97.9 3.4E-05 7.4E-10 75.7 7.4 35 428-462 1-35 (163)
135 COG3842 PotA ABC-type spermidi 97.8 1.8E-06 4E-11 95.0 -2.2 177 426-642 32-240 (352)
136 TIGR01351 adk adenylate kinase 97.8 4.5E-05 9.7E-10 78.4 8.1 116 428-558 2-125 (210)
137 COG1122 CbiO ABC-type cobalt t 97.8 7E-06 1.5E-10 86.1 1.8 167 425-628 30-229 (235)
138 PRK14532 adenylate kinase; Pro 97.8 5.4E-05 1.2E-09 76.1 8.2 35 428-462 3-37 (188)
139 PRK00279 adk adenylate kinase; 97.8 5.6E-05 1.2E-09 78.0 8.4 36 427-462 2-37 (215)
140 COG4608 AppF ABC-type oligopep 97.8 3.4E-06 7.4E-11 89.0 -0.7 103 424-539 38-142 (268)
141 PRK13946 shikimate kinase; Pro 97.8 6.1E-05 1.3E-09 76.0 8.1 37 424-460 9-45 (184)
142 PRK14531 adenylate kinase; Pro 97.8 7.9E-05 1.7E-09 75.0 8.8 37 427-463 4-40 (183)
143 PTZ00088 adenylate kinase 1; P 97.8 4.9E-05 1.1E-09 79.6 7.4 123 423-558 4-131 (229)
144 PRK09536 btuD corrinoid ABC tr 97.8 4.3E-06 9.4E-11 94.3 -0.7 44 590-633 191-234 (402)
145 COG3839 MalK ABC-type sugar tr 97.8 2.3E-06 4.9E-11 93.8 -2.9 37 426-464 30-66 (338)
146 COG0411 LivG ABC-type branched 97.7 2.7E-06 5.9E-11 88.3 -2.7 43 590-632 202-244 (250)
147 COG4619 ABC-type uncharacteriz 97.7 3.1E-05 6.7E-10 76.4 4.5 81 425-507 29-140 (223)
148 PRK00300 gmk guanylate kinase; 97.7 0.00022 4.8E-09 72.6 10.8 27 424-450 4-30 (205)
149 PRK12339 2-phosphoglycerate ki 97.7 0.00013 2.8E-09 74.7 8.8 39 424-462 2-40 (197)
150 TIGR02322 phosphon_PhnN phosph 97.7 0.00015 3.3E-09 72.2 8.8 25 427-451 3-27 (179)
151 PRK10078 ribose 1,5-bisphospho 97.7 6.8E-05 1.5E-09 75.6 6.3 33 426-458 3-35 (186)
152 PF01928 CYTH: CYTH domain; I 97.7 0.00015 3.2E-09 72.7 8.5 127 638-770 35-183 (185)
153 COG1124 DppF ABC-type dipeptid 97.7 4E-06 8.6E-11 87.1 -3.0 37 424-462 32-68 (252)
154 PRK03846 adenylylsulfate kinas 97.6 0.00025 5.4E-09 72.3 10.0 40 421-460 20-64 (198)
155 cd00227 CPT Chloramphenicol (C 97.6 0.00013 2.9E-09 72.7 7.7 37 426-462 3-41 (175)
156 PRK09825 idnK D-gluconate kina 97.6 0.00024 5.1E-09 71.4 9.4 37 426-462 4-40 (176)
157 COG0563 Adk Adenylate kinase a 97.6 3.5E-05 7.6E-10 77.6 2.8 37 427-463 2-38 (178)
158 PRK13808 adenylate kinase; Pro 97.5 0.00022 4.8E-09 78.3 8.4 35 428-462 3-37 (333)
159 PRK11650 ugpC glycerol-3-phosp 97.5 1E-05 2.2E-10 90.0 -2.3 28 425-452 30-57 (356)
160 COG1118 CysA ABC-type sulfate/ 97.5 2.7E-05 5.9E-10 83.2 1.0 56 590-646 190-245 (345)
161 TIGR02314 ABC_MetN D-methionin 97.5 2.2E-05 4.9E-10 86.9 0.3 29 424-452 30-58 (343)
162 COG1136 SalX ABC-type antimicr 97.5 2.8E-05 6E-10 80.8 0.8 29 424-452 30-58 (226)
163 KOG3354 Gluconate kinase [Carb 97.5 6.8E-05 1.5E-09 72.8 3.2 48 422-469 9-56 (191)
164 KOG3079 Uridylate kinase/adeny 97.5 0.0003 6.4E-09 70.4 7.1 125 422-560 5-136 (195)
165 PLN02674 adenylate kinase 97.4 0.00063 1.4E-08 71.9 10.0 121 423-558 29-159 (244)
166 COG3265 GntK Gluconate kinase 97.4 0.00041 8.8E-09 67.2 7.6 43 431-473 1-43 (161)
167 COG1127 Ttg2A ABC-type transpo 97.4 3.7E-05 8.1E-10 79.8 0.4 37 590-626 198-234 (263)
168 PHA02530 pseT polynucleotide k 97.4 0.00023 5E-09 76.9 6.6 37 425-461 2-39 (300)
169 PRK10938 putative molybdenum t 97.4 3E-05 6.4E-10 89.8 -0.7 28 424-451 28-55 (490)
170 COG1936 Predicted nucleotide k 97.4 0.00044 9.6E-09 68.7 7.4 105 427-567 2-108 (180)
171 PRK11000 maltose/maltodextrin 97.4 1.8E-05 3.9E-10 88.5 -2.6 27 425-451 29-55 (369)
172 COG4172 ABC-type uncharacteriz 97.4 2.1E-05 4.6E-10 86.6 -2.1 162 426-627 314-516 (534)
173 cd03218 ABC_YhbG The ABC trans 97.4 3.4E-05 7.4E-10 80.2 -0.6 28 424-451 25-52 (232)
174 TIGR03265 PhnT2 putative 2-ami 97.4 2E-05 4.3E-10 87.7 -2.6 27 425-451 30-56 (353)
175 cd02030 NDUO42 NADH:Ubiquinone 97.4 0.00078 1.7E-08 69.9 9.4 57 537-595 143-200 (219)
176 PRK11432 fbpC ferric transport 97.4 2.1E-05 4.5E-10 87.5 -2.5 28 425-452 32-59 (351)
177 COG0194 Gmk Guanylate kinase [ 97.4 0.00074 1.6E-08 67.9 8.6 130 424-559 3-136 (191)
178 COG0703 AroK Shikimate kinase 97.4 0.00037 8E-09 69.5 6.5 35 428-462 5-39 (172)
179 PRK10851 sulfate/thiosulfate t 97.3 2.4E-05 5.1E-10 87.1 -2.3 28 425-452 28-55 (353)
180 PRK09452 potA putrescine/sperm 97.3 2.4E-05 5.2E-10 87.7 -2.7 27 425-451 40-66 (375)
181 PRK05537 bifunctional sulfate 97.3 0.00081 1.8E-08 79.3 9.8 60 396-459 366-432 (568)
182 TIGR00455 apsK adenylylsulfate 97.3 0.0017 3.7E-08 65.2 10.5 39 421-459 14-57 (184)
183 COG1123 ATPase components of v 97.3 3.3E-05 7.1E-10 89.0 -2.2 37 590-626 482-518 (539)
184 PF01583 APS_kinase: Adenylyls 97.3 0.00058 1.3E-08 67.3 6.7 38 424-461 1-43 (156)
185 COG1131 CcmA ABC-type multidru 97.3 5.9E-05 1.3E-09 81.8 -0.3 28 424-451 30-57 (293)
186 PRK11144 modC molybdate transp 97.3 4.8E-05 1E-09 84.6 -1.1 27 425-451 24-50 (352)
187 cd02027 APSK Adenosine 5'-phos 97.2 0.00058 1.3E-08 66.6 6.5 23 427-449 1-23 (149)
188 cd01673 dNK Deoxyribonucleosid 97.2 0.00044 9.5E-09 69.8 5.8 48 536-585 124-171 (193)
189 smart00072 GuKc Guanylate kina 97.2 0.0014 3E-08 66.0 9.4 123 426-556 3-133 (184)
190 TIGR00041 DTMP_kinase thymidyl 97.2 0.0024 5.1E-08 64.4 11.1 26 425-450 3-28 (195)
191 PRK00091 miaA tRNA delta(2)-is 97.2 0.00031 6.6E-09 76.7 4.6 40 424-463 3-44 (307)
192 PF06414 Zeta_toxin: Zeta toxi 97.2 0.00054 1.2E-08 69.9 6.0 41 421-461 11-54 (199)
193 TIGR03258 PhnT 2-aminoethylpho 97.2 4E-05 8.8E-10 85.5 -2.5 28 425-452 31-58 (362)
194 COG3954 PrkB Phosphoribulokina 97.2 0.0014 3E-08 65.8 8.4 123 9-132 66-206 (289)
195 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00064 1.4E-08 71.8 6.5 24 427-450 1-24 (249)
196 PRK09544 znuC high-affinity zi 97.2 5.8E-05 1.2E-09 80.0 -1.5 28 424-451 29-56 (251)
197 PRK13536 nodulation factor exp 97.2 5.2E-05 1.1E-09 83.9 -2.0 28 425-452 67-94 (340)
198 PLN02459 probable adenylate ki 97.2 0.0014 2.9E-08 69.9 8.6 122 424-558 28-154 (261)
199 PRK04220 2-phosphoglycerate ki 97.2 0.00034 7.3E-09 75.8 4.1 38 423-460 90-128 (301)
200 PRK14526 adenylate kinase; Pro 97.1 0.0014 3.1E-08 67.8 8.4 35 428-462 3-37 (211)
201 COG3025 Uncharacterized conser 97.1 0.00047 1E-08 76.8 5.0 117 165-289 34-180 (432)
202 PHA00729 NTP-binding motif con 97.1 0.003 6.5E-08 65.9 10.7 38 411-450 5-42 (226)
203 PRK13537 nodulation ABC transp 97.1 8.7E-05 1.9E-09 81.0 -0.8 27 425-451 33-59 (306)
204 PRK15439 autoinducer 2 ABC tra 97.1 9.1E-05 2E-09 86.4 -0.7 27 425-451 37-63 (510)
205 PRK09700 D-allose transporter 97.1 0.00016 3.6E-09 84.1 1.2 27 425-451 289-315 (510)
206 PF13189 Cytidylate_kin2: Cyti 97.1 0.00029 6.2E-09 70.9 2.8 130 427-559 1-136 (179)
207 PRK14529 adenylate kinase; Pro 97.1 0.0019 4.2E-08 67.3 8.9 116 428-559 3-128 (223)
208 PRK11288 araG L-arabinose tran 97.1 0.00017 3.8E-09 83.8 1.1 27 424-450 278-304 (501)
209 PRK14738 gmk guanylate kinase; 97.1 0.0019 4.1E-08 66.5 8.5 28 421-448 9-36 (206)
210 PF00406 ADK: Adenylate kinase 97.1 0.0006 1.3E-08 66.2 4.5 112 430-556 1-122 (151)
211 cd03214 ABC_Iron-Siderophores_ 97.1 0.00011 2.3E-09 73.7 -0.8 37 424-462 24-60 (180)
212 COG1116 TauB ABC-type nitrate/ 97.1 0.00022 4.8E-09 74.6 1.5 29 424-452 28-56 (248)
213 PLN02165 adenylate isopentenyl 97.0 0.00048 1E-08 75.6 4.1 42 422-463 40-83 (334)
214 COG0410 LivF ABC-type branched 97.0 5.3E-05 1.2E-09 78.3 -3.1 43 590-632 189-231 (237)
215 PRK11607 potG putrescine trans 97.0 6.7E-05 1.4E-09 84.2 -2.7 27 425-451 45-71 (377)
216 TIGR03575 selen_PSTK_euk L-ser 97.0 0.00052 1.1E-08 75.8 4.3 35 428-462 2-42 (340)
217 PRK14021 bifunctional shikimat 97.0 0.0008 1.7E-08 79.1 6.0 39 424-462 5-43 (542)
218 COG1137 YhbG ABC-type (unclass 97.0 2.7E-05 5.9E-10 78.8 -5.4 42 592-633 193-234 (243)
219 PRK09700 D-allose transporter 97.0 0.00014 3.1E-09 84.7 -0.4 28 424-451 30-57 (510)
220 PF00625 Guanylate_kin: Guanyl 97.0 0.001 2.2E-08 66.8 5.8 126 426-557 3-134 (183)
221 KOG3308 Uncharacterized protei 97.0 0.0004 8.6E-09 70.3 2.7 120 8-134 53-187 (225)
222 PRK10762 D-ribose transporter 97.0 0.00019 4.2E-09 83.4 0.4 28 424-451 29-56 (501)
223 PRK13549 xylose transporter AT 97.0 0.00018 3.9E-09 83.7 -0.1 28 424-451 30-57 (506)
224 PRK15439 autoinducer 2 ABC tra 97.0 0.00024 5.3E-09 82.8 0.8 26 425-450 289-314 (510)
225 COG1126 GlnQ ABC-type polar am 96.9 0.00059 1.3E-08 70.1 3.3 27 424-450 27-53 (240)
226 PRK09435 membrane ATPase/prote 96.9 0.0011 2.3E-08 73.3 5.5 38 421-458 52-94 (332)
227 PRK13947 shikimate kinase; Pro 96.9 0.00063 1.4E-08 67.2 3.4 35 427-461 3-37 (171)
228 KOG3347 Predicted nucleotide k 96.9 0.0035 7.6E-08 60.9 7.9 103 427-558 9-114 (176)
229 PLN02840 tRNA dimethylallyltra 96.9 0.00084 1.8E-08 75.9 4.3 40 423-462 19-60 (421)
230 PF07931 CPT: Chloramphenicol 96.9 0.0019 4E-08 64.9 6.2 37 426-462 2-40 (174)
231 PLN02842 nucleotide kinase 96.8 0.0015 3.2E-08 75.5 5.9 33 430-462 2-34 (505)
232 PRK13948 shikimate kinase; Pro 96.8 0.0009 2E-08 67.7 3.5 40 422-461 7-46 (182)
233 PRK05416 glmZ(sRNA)-inactivati 96.8 0.0039 8.4E-08 67.6 8.5 28 424-452 5-32 (288)
234 PLN02748 tRNA dimethylallyltra 96.8 0.00099 2.1E-08 76.4 4.1 42 422-463 19-62 (468)
235 cd02022 DPCK Dephospho-coenzym 96.8 0.0019 4.2E-08 64.7 5.7 113 15-136 60-176 (179)
236 PF03308 ArgK: ArgK protein; 96.8 0.0013 2.7E-08 69.6 4.4 37 413-449 17-53 (266)
237 COG1134 TagH ABC-type polysacc 96.8 0.0006 1.3E-08 71.2 1.8 28 425-452 53-80 (249)
238 PF01202 SKI: Shikimate kinase 96.8 0.00078 1.7E-08 66.2 2.5 29 434-462 1-29 (158)
239 PF00004 AAA: ATPase family as 96.7 0.0012 2.7E-08 61.4 3.5 30 428-457 1-30 (132)
240 PRK10751 molybdopterin-guanine 96.7 0.0013 2.8E-08 66.0 3.8 28 423-450 4-31 (173)
241 PRK13549 xylose transporter AT 96.7 0.0005 1.1E-08 80.1 0.8 27 424-450 287-313 (506)
242 COG0396 sufC Cysteine desulfur 96.7 0.001 2.2E-08 68.9 2.9 43 424-466 29-71 (251)
243 TIGR01663 PNK-3'Pase polynucle 96.7 0.0022 4.7E-08 74.8 5.9 38 422-459 366-403 (526)
244 COG1117 PstB ABC-type phosphat 96.7 0.0014 3.1E-08 67.2 3.8 41 422-462 30-73 (253)
245 PF00448 SRP54: SRP54-type pro 96.7 0.0012 2.6E-08 67.6 3.2 38 425-462 1-43 (196)
246 PRK11545 gntK gluconate kinase 96.7 0.0011 2.4E-08 65.7 2.8 31 431-461 1-31 (163)
247 COG3840 ThiQ ABC-type thiamine 96.7 0.001 2.2E-08 66.7 2.6 27 424-450 24-50 (231)
248 PRK00889 adenylylsulfate kinas 96.7 0.0015 3.3E-08 65.0 3.8 36 424-459 3-43 (175)
249 TIGR01166 cbiO cobalt transpor 96.7 0.0012 2.6E-08 66.6 3.1 27 425-451 18-44 (190)
250 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0013 2.7E-08 67.8 3.2 27 425-451 30-56 (218)
251 TIGR00174 miaA tRNA isopenteny 96.6 0.0014 3E-08 70.9 3.5 37 427-463 1-39 (287)
252 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0028 6E-08 60.9 5.2 30 423-452 20-49 (133)
253 COG4639 Predicted kinase [Gene 96.6 0.0023 4.9E-08 62.6 4.6 35 425-461 2-36 (168)
254 COG1703 ArgK Putative periplas 96.6 0.0022 4.8E-08 68.8 4.9 119 411-546 37-174 (323)
255 COG0529 CysC Adenylylsulfate k 96.6 0.0021 4.6E-08 64.1 4.4 41 421-461 19-64 (197)
256 TIGR00960 3a0501s02 Type II (G 96.6 0.0013 2.9E-08 67.6 3.2 27 425-451 29-55 (216)
257 PRK12269 bifunctional cytidyla 96.6 0.0013 2.8E-08 80.7 3.4 39 425-463 34-72 (863)
258 TIGR02673 FtsE cell division A 96.6 0.0015 3.4E-08 66.9 3.5 27 425-451 28-54 (214)
259 PRK11629 lolD lipoprotein tran 96.6 0.0016 3.5E-08 67.9 3.5 27 425-451 35-61 (233)
260 TIGR02211 LolD_lipo_ex lipopro 96.6 0.0016 3.4E-08 67.2 3.4 28 424-451 30-57 (221)
261 cd03256 ABC_PhnC_transporter A 96.6 0.0016 3.5E-08 68.0 3.5 28 424-451 26-53 (241)
262 cd03263 ABC_subfamily_A The AB 96.5 0.0016 3.5E-08 67.1 3.2 28 424-451 27-54 (220)
263 cd03219 ABC_Mj1267_LivG_branch 96.5 0.0016 3.5E-08 67.8 3.2 28 424-451 25-52 (236)
264 cd03259 ABC_Carb_Solutes_like 96.5 0.0016 3.5E-08 66.8 3.2 28 424-451 25-52 (213)
265 cd03261 ABC_Org_Solvent_Resist 96.5 0.0016 3.4E-08 68.0 3.1 27 425-451 26-52 (235)
266 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0018 3.8E-08 65.3 3.2 36 424-461 24-59 (177)
267 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0018 3.9E-08 66.3 3.3 28 424-451 26-53 (211)
268 cd03226 ABC_cobalt_CbiO_domain 96.5 0.0018 3.8E-08 66.2 3.2 27 425-451 26-52 (205)
269 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0017 3.7E-08 67.0 3.2 27 425-451 30-56 (220)
270 TIGR03608 L_ocin_972_ABC putat 96.5 0.0018 4E-08 65.9 3.3 27 425-451 24-50 (206)
271 cd03224 ABC_TM1139_LivF_branch 96.5 0.0018 4E-08 66.7 3.3 28 424-451 25-52 (222)
272 TIGR01187 potA spermidine/putr 96.5 0.00023 5E-09 78.3 -3.6 22 430-451 1-22 (325)
273 cd03269 ABC_putative_ATPase Th 96.5 0.0018 3.9E-08 66.3 3.2 28 424-451 25-52 (210)
274 PRK10584 putative ABC transpor 96.5 0.0021 4.4E-08 66.7 3.6 28 424-451 35-62 (228)
275 cd03292 ABC_FtsE_transporter F 96.5 0.0019 4E-08 66.3 3.2 28 424-451 26-53 (214)
276 cd03235 ABC_Metallic_Cations A 96.5 0.0017 3.7E-08 66.6 2.9 28 424-451 24-51 (213)
277 cd03301 ABC_MalK_N The N-termi 96.5 0.0019 4.2E-08 66.2 3.2 28 424-451 25-52 (213)
278 cd03257 ABC_NikE_OppD_transpor 96.5 0.002 4.3E-08 66.6 3.3 28 424-451 30-57 (228)
279 cd03258 ABC_MetN_methionine_tr 96.5 0.002 4.3E-08 67.1 3.3 28 424-451 30-57 (233)
280 cd03296 ABC_CysA_sulfate_impor 96.5 0.0019 4.2E-08 67.6 3.2 28 424-451 27-54 (239)
281 TIGR02315 ABC_phnC phosphonate 96.5 0.002 4.3E-08 67.5 3.2 28 424-451 27-54 (243)
282 cd03260 ABC_PstB_phosphate_tra 96.5 0.0025 5.4E-08 66.1 3.9 26 424-449 25-50 (227)
283 PRK13541 cytochrome c biogenes 96.4 0.0021 4.6E-08 65.2 3.3 35 425-461 26-60 (195)
284 cd03265 ABC_DrrA DrrA is the A 96.4 0.0021 4.5E-08 66.4 3.2 28 424-451 25-52 (220)
285 cd03229 ABC_Class3 This class 96.4 0.0022 4.9E-08 64.1 3.2 28 424-451 25-52 (178)
286 cd03264 ABC_drug_resistance_li 96.4 0.002 4.4E-08 66.0 2.9 25 427-451 27-51 (211)
287 COG4618 ArpD ABC-type protease 96.4 0.0021 4.6E-08 73.1 3.1 27 426-452 363-389 (580)
288 PRK13973 thymidylate kinase; P 96.4 0.0087 1.9E-07 61.8 7.5 25 425-449 3-27 (213)
289 COG1123 ATPase components of v 96.4 0.00073 1.6E-08 78.1 -0.6 107 590-701 207-337 (539)
290 PRK13951 bifunctional shikimat 96.4 0.0039 8.5E-08 72.4 5.4 36 427-462 2-37 (488)
291 cd03266 ABC_NatA_sodium_export 96.4 0.0023 5E-08 65.8 3.2 27 425-451 31-57 (218)
292 PRK11248 tauB taurine transpor 96.4 0.0024 5.2E-08 67.8 3.2 28 424-451 26-53 (255)
293 cd03262 ABC_HisP_GlnQ_permease 96.4 0.0025 5.4E-08 65.3 3.3 28 424-451 25-52 (213)
294 TIGR01184 ntrCD nitrate transp 96.4 0.0024 5.2E-08 66.6 3.2 27 425-451 11-37 (230)
295 TIGR03864 PQQ_ABC_ATP ABC tran 96.4 0.0024 5.2E-08 66.7 3.2 28 424-451 26-53 (236)
296 PF00005 ABC_tran: ABC transpo 96.3 0.0014 3E-08 62.1 1.2 26 425-450 11-36 (137)
297 PF13555 AAA_29: P-loop contai 96.3 0.0035 7.6E-08 52.2 3.4 23 427-449 25-47 (62)
298 TIGR03410 urea_trans_UrtE urea 96.3 0.0026 5.7E-08 66.0 3.4 28 424-451 25-52 (230)
299 cd03246 ABCC_Protease_Secretio 96.3 0.0034 7.3E-08 62.5 4.0 29 424-452 27-55 (173)
300 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0026 5.7E-08 65.2 3.2 27 425-451 24-50 (211)
301 cd03215 ABC_Carb_Monos_II This 96.3 0.0028 6.1E-08 63.6 3.3 29 424-452 25-53 (182)
302 PRK13540 cytochrome c biogenes 96.3 0.0028 6.1E-08 64.5 3.4 28 424-451 26-53 (200)
303 cd03248 ABCC_TAP TAP, the Tran 96.3 0.003 6.4E-08 65.5 3.6 37 424-462 39-75 (226)
304 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0027 5.9E-08 63.2 3.1 36 424-461 25-60 (173)
305 PRK13538 cytochrome c biogenes 96.3 0.0027 5.9E-08 64.8 3.2 29 424-452 26-54 (204)
306 PF08433 KTI12: Chromatin asso 96.3 0.0079 1.7E-07 64.7 6.7 105 427-559 3-121 (270)
307 PRK10247 putative ABC transpor 96.3 0.0033 7.2E-08 65.3 3.8 28 424-451 32-59 (225)
308 TIGR01188 drrA daunorubicin re 96.3 0.0026 5.7E-08 69.2 3.1 29 424-452 18-46 (302)
309 smart00382 AAA ATPases associa 96.3 0.0031 6.8E-08 57.8 3.2 28 425-452 2-29 (148)
310 TIGR01189 ccmA heme ABC export 96.3 0.0029 6.3E-08 64.3 3.2 28 424-451 25-52 (198)
311 cd03294 ABC_Pro_Gly_Bertaine T 96.3 0.0031 6.6E-08 67.5 3.5 28 424-451 49-76 (269)
312 cd03228 ABCC_MRP_Like The MRP 96.3 0.0033 7.1E-08 62.5 3.5 37 424-462 27-63 (171)
313 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0032 7E-08 66.0 3.6 28 424-451 26-53 (242)
314 cd03268 ABC_BcrA_bacitracin_re 96.3 0.0029 6.4E-08 64.6 3.2 28 424-451 25-52 (208)
315 PRK11124 artP arginine transpo 96.3 0.003 6.5E-08 66.2 3.2 28 424-451 27-54 (242)
316 COG4138 BtuD ABC-type cobalami 96.2 0.0085 1.8E-07 59.8 6.0 42 590-631 184-225 (248)
317 PRK10908 cell division protein 96.2 0.003 6.6E-08 65.2 3.1 28 424-451 27-54 (222)
318 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0034 7.5E-08 64.5 3.5 28 423-451 22-49 (214)
319 PRK11614 livF leucine/isoleuci 96.2 0.0031 6.7E-08 65.9 3.2 28 424-451 30-57 (237)
320 PRK10575 iron-hydroxamate tran 96.2 0.0029 6.3E-08 67.4 2.9 27 424-450 36-62 (265)
321 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0034 7.5E-08 65.3 3.4 28 424-451 27-54 (234)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0032 6.9E-08 61.0 2.9 29 424-452 25-53 (144)
323 cd03252 ABCC_Hemolysin The ABC 96.2 0.0034 7.4E-08 65.5 3.3 28 424-451 27-54 (237)
324 PRK13539 cytochrome c biogenes 96.2 0.0034 7.3E-08 64.4 3.2 27 424-450 27-53 (207)
325 cd03245 ABCC_bacteriocin_expor 96.2 0.0035 7.6E-08 64.6 3.4 28 424-451 29-56 (220)
326 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.2 0.0034 7.4E-08 65.5 3.3 28 424-451 28-55 (238)
327 TIGR02769 nickel_nikE nickel i 96.2 0.0035 7.5E-08 66.8 3.4 28 424-451 36-63 (265)
328 PRK13649 cbiO cobalt transport 96.2 0.0031 6.7E-08 67.7 3.0 27 425-451 33-59 (280)
329 PRK11701 phnK phosphonate C-P 96.2 0.0034 7.4E-08 66.5 3.3 28 424-451 31-58 (258)
330 cd03216 ABC_Carb_Monos_I This 96.2 0.0038 8.3E-08 61.7 3.4 36 424-461 25-60 (163)
331 PRK13648 cbiO cobalt transport 96.2 0.0037 8E-08 66.8 3.5 28 424-451 34-61 (269)
332 PRK10895 lipopolysaccharide AB 96.2 0.0033 7.2E-08 65.8 3.1 28 424-451 28-55 (241)
333 PRK14250 phosphate ABC transpo 96.2 0.0034 7.4E-08 65.9 3.2 28 424-451 28-55 (241)
334 cd03254 ABCC_Glucan_exporter_l 96.2 0.0036 7.9E-08 64.9 3.3 28 424-451 28-55 (229)
335 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0038 8.2E-08 64.4 3.4 28 424-451 29-56 (221)
336 PRK11153 metN DL-methionine tr 96.2 0.0036 7.8E-08 69.5 3.5 27 425-451 31-57 (343)
337 PRK13638 cbiO cobalt transport 96.2 0.0032 7E-08 67.3 3.0 27 425-451 27-53 (271)
338 COG0378 HypB Ni2+-binding GTPa 96.2 0.0048 1E-07 62.6 3.9 41 422-462 9-54 (202)
339 TIGR03771 anch_rpt_ABC anchore 96.2 0.0036 7.9E-08 64.9 3.3 26 425-450 6-31 (223)
340 TIGR03411 urea_trans_UrtD urea 96.2 0.0038 8.3E-08 65.3 3.5 28 424-451 27-54 (242)
341 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.0034 7.3E-08 65.3 3.0 28 424-451 47-74 (224)
342 PRK11831 putative ABC transpor 96.2 0.0034 7.4E-08 67.1 3.1 27 425-451 33-59 (269)
343 PRK13548 hmuV hemin importer A 96.2 0.0038 8.2E-08 66.3 3.4 28 424-451 27-54 (258)
344 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0035 7.6E-08 66.3 3.2 28 424-451 24-51 (246)
345 TIGR02324 CP_lyasePhnL phospho 96.2 0.0036 7.8E-08 64.7 3.2 27 425-451 34-60 (224)
346 COG1125 OpuBA ABC-type proline 96.2 0.0044 9.6E-08 65.2 3.8 37 426-464 28-64 (309)
347 PRK10416 signal recognition pa 96.2 0.0044 9.4E-08 68.2 4.0 27 423-449 112-138 (318)
348 TIGR02770 nickel_nikD nickel i 96.1 0.0037 7.9E-08 65.1 3.2 28 424-451 11-38 (230)
349 cd01672 TMPK Thymidine monopho 96.1 0.0038 8.3E-08 62.4 3.3 24 426-449 1-24 (200)
350 PRK13645 cbiO cobalt transport 96.1 0.0037 8E-08 67.5 3.3 27 425-451 37-63 (289)
351 PRK11247 ssuB aliphatic sulfon 96.1 0.0037 8E-08 66.6 3.2 28 424-451 37-64 (257)
352 TIGR01277 thiQ thiamine ABC tr 96.1 0.0039 8.5E-08 64.1 3.3 28 424-451 23-50 (213)
353 PRK10771 thiQ thiamine transpo 96.1 0.0037 8E-08 65.1 3.1 27 424-450 24-50 (232)
354 cd03247 ABCC_cytochrome_bd The 96.1 0.0042 9.2E-08 62.0 3.4 28 424-451 27-54 (178)
355 PRK09493 glnQ glutamine ABC tr 96.1 0.0038 8.3E-08 65.3 3.2 27 424-450 26-52 (240)
356 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0042 9.1E-08 61.5 3.3 29 424-452 26-54 (166)
357 PRK15177 Vi polysaccharide exp 96.1 0.0032 7E-08 65.0 2.6 28 424-451 12-39 (213)
358 PRK15056 manganese/iron transp 96.1 0.0037 8.1E-08 66.9 3.1 27 425-451 33-59 (272)
359 PRK10522 multidrug transporter 96.1 0.0018 4E-08 76.2 0.8 27 425-451 349-375 (547)
360 cd03253 ABCC_ATM1_transporter 96.1 0.0042 9.2E-08 64.7 3.4 28 424-451 26-53 (236)
361 cd02020 CMPK Cytidine monophos 96.1 0.012 2.7E-07 55.9 6.3 74 59-133 66-146 (147)
362 PRK11300 livG leucine/isoleuci 96.1 0.0038 8.2E-08 65.9 3.0 28 424-451 30-57 (255)
363 PRK13632 cbiO cobalt transport 96.1 0.0042 9.1E-08 66.5 3.4 28 424-451 34-61 (271)
364 PRK06761 hypothetical protein; 96.1 0.0092 2E-07 64.4 6.0 35 426-460 4-38 (282)
365 TIGR01978 sufC FeS assembly AT 96.1 0.0042 9.1E-08 64.9 3.3 26 424-449 25-50 (243)
366 cd00071 GMPK Guanosine monopho 96.1 0.0037 8E-08 60.1 2.7 24 427-450 1-24 (137)
367 PRK11264 putative amino-acid A 96.1 0.0042 9E-08 65.4 3.3 27 424-450 28-54 (250)
368 PRK13637 cbiO cobalt transport 96.1 0.0041 8.9E-08 67.2 3.3 28 424-451 32-59 (287)
369 PRK13646 cbiO cobalt transport 96.1 0.0042 9.1E-08 67.1 3.3 27 425-451 33-59 (286)
370 PRK14730 coaE dephospho-CoA ki 96.1 0.012 2.7E-07 60.0 6.6 74 58-136 107-180 (195)
371 TIGR01288 nodI ATP-binding ABC 96.1 0.004 8.7E-08 67.8 3.2 28 424-451 29-56 (303)
372 PRK13647 cbiO cobalt transport 96.1 0.0042 9.1E-08 66.6 3.2 27 425-451 31-57 (274)
373 TIGR02323 CP_lyasePhnK phospho 96.1 0.0041 8.9E-08 65.6 3.1 28 424-451 28-55 (253)
374 TIGR00101 ureG urease accessor 96.1 0.0053 1.1E-07 63.0 3.8 26 425-450 1-26 (199)
375 PRK15112 antimicrobial peptide 96.1 0.0043 9.3E-08 66.2 3.2 28 424-451 38-65 (267)
376 PRK13543 cytochrome c biogenes 96.0 0.0043 9.2E-08 64.0 3.1 27 425-451 37-63 (214)
377 TIGR03005 ectoine_ehuA ectoine 96.0 0.0042 9.1E-08 65.5 3.1 28 424-451 25-52 (252)
378 cd03234 ABCG_White The White s 96.0 0.0045 9.8E-08 64.2 3.3 27 424-450 32-58 (226)
379 cd00820 PEPCK_HprK Phosphoenol 96.0 0.0044 9.6E-08 57.3 2.8 22 425-446 15-36 (107)
380 PRK14732 coaE dephospho-CoA ki 96.0 0.0099 2.1E-07 60.8 5.6 74 58-136 103-176 (196)
381 PRK13635 cbiO cobalt transport 96.0 0.0045 9.8E-08 66.6 3.3 29 424-452 32-60 (279)
382 cd03233 ABC_PDR_domain1 The pl 96.0 0.0043 9.4E-08 63.4 3.0 27 424-450 32-58 (202)
383 COG4525 TauB ABC-type taurine 96.0 0.0039 8.5E-08 63.3 2.6 106 427-538 33-164 (259)
384 TIGR03873 F420-0_ABC_ATP propo 96.0 0.0046 1E-07 65.4 3.3 28 424-451 26-53 (256)
385 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.0054 1.2E-07 62.7 3.6 28 424-451 33-60 (207)
386 PRK13650 cbiO cobalt transport 96.0 0.0048 1E-07 66.4 3.4 29 424-452 32-60 (279)
387 TIGR01425 SRP54_euk signal rec 96.0 0.0061 1.3E-07 69.4 4.3 38 423-460 98-140 (429)
388 cd03250 ABCC_MRP_domain1 Domai 96.0 0.0049 1.1E-07 62.9 3.3 28 424-451 30-57 (204)
389 PRK11308 dppF dipeptide transp 96.0 0.0051 1.1E-07 67.9 3.6 27 425-451 41-67 (327)
390 PRK14269 phosphate ABC transpo 96.0 0.0057 1.2E-07 64.3 3.8 26 425-450 28-53 (246)
391 cd03238 ABC_UvrA The excision 96.0 0.0049 1.1E-07 62.1 3.1 23 424-446 20-42 (176)
392 PF02367 UPF0079: Uncharacteri 96.0 0.0087 1.9E-07 56.8 4.6 29 423-451 13-41 (123)
393 PF13521 AAA_28: AAA domain; P 96.0 0.0047 1E-07 60.7 3.0 26 428-454 2-27 (163)
394 cd03267 ABC_NatA_like Similar 96.0 0.0046 1E-07 64.7 3.1 28 424-451 46-73 (236)
395 PRK13652 cbiO cobalt transport 96.0 0.0048 1E-07 66.3 3.3 29 424-452 29-57 (277)
396 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0087 1.9E-07 66.5 5.2 28 423-450 76-103 (361)
397 PRK12337 2-phosphoglycerate ki 96.0 0.0058 1.3E-07 69.8 3.9 38 423-460 253-291 (475)
398 PRK15079 oligopeptide ABC tran 96.0 0.0052 1.1E-07 67.9 3.5 37 424-462 46-82 (331)
399 PRK13639 cbiO cobalt transport 96.0 0.0048 1.1E-07 66.2 3.2 28 424-451 27-54 (275)
400 cd03232 ABC_PDR_domain2 The pl 96.0 0.005 1.1E-07 62.4 3.1 26 424-449 32-57 (192)
401 PRK13641 cbiO cobalt transport 95.9 0.0051 1.1E-07 66.5 3.3 27 425-451 33-59 (287)
402 cd03231 ABC_CcmA_heme_exporter 95.9 0.0052 1.1E-07 62.7 3.2 28 424-451 25-52 (201)
403 TIGR03740 galliderm_ABC gallid 95.9 0.0052 1.1E-07 63.5 3.2 27 424-450 25-51 (223)
404 TIGR00750 lao LAO/AO transport 95.9 0.007 1.5E-07 65.9 4.3 40 421-460 30-74 (300)
405 PRK13644 cbiO cobalt transport 95.9 0.0054 1.2E-07 65.8 3.3 27 425-451 28-54 (274)
406 cd01130 VirB11-like_ATPase Typ 95.9 0.0075 1.6E-07 60.9 4.2 26 425-450 25-50 (186)
407 cd03290 ABCC_SUR1_N The SUR do 95.9 0.0057 1.2E-07 63.0 3.4 28 424-451 26-53 (218)
408 TIGR01186 proV glycine betaine 95.9 0.0055 1.2E-07 68.6 3.4 28 425-452 19-46 (363)
409 PRK14242 phosphate transporter 95.9 0.0054 1.2E-07 64.7 3.2 27 424-450 31-57 (253)
410 PRK00698 tmk thymidylate kinas 95.9 0.0068 1.5E-07 61.4 3.8 26 425-450 3-28 (205)
411 cd03213 ABCG_EPDR ABCG transpo 95.9 0.0054 1.2E-07 62.3 3.1 26 424-449 34-59 (194)
412 TIGR03499 FlhF flagellar biosy 95.9 0.0068 1.5E-07 65.5 4.0 37 424-460 193-236 (282)
413 PRK14247 phosphate ABC transpo 95.9 0.0048 1E-07 65.0 2.7 27 424-450 28-54 (250)
414 PRK13643 cbiO cobalt transport 95.9 0.0055 1.2E-07 66.2 3.3 28 424-451 31-58 (288)
415 PRK14267 phosphate ABC transpo 95.9 0.0051 1.1E-07 64.9 2.8 28 424-451 29-56 (253)
416 PRK13651 cobalt transporter AT 95.9 0.0056 1.2E-07 66.9 3.2 29 424-452 32-60 (305)
417 PRK11231 fecE iron-dicitrate t 95.9 0.0055 1.2E-07 64.8 3.1 28 424-451 27-54 (255)
418 TIGR00972 3a0107s01c2 phosphat 95.9 0.0053 1.1E-07 64.6 2.9 28 424-451 26-53 (247)
419 PRK10619 histidine/lysine/argi 95.9 0.0058 1.3E-07 64.7 3.2 27 424-450 30-56 (257)
420 TIGR02982 heterocyst_DevA ABC 95.8 0.006 1.3E-07 63.0 3.2 27 425-451 31-57 (220)
421 PRK13631 cbiO cobalt transport 95.8 0.0062 1.3E-07 67.0 3.4 28 425-452 52-79 (320)
422 cd00009 AAA The AAA+ (ATPases 95.8 0.017 3.7E-07 53.6 6.0 25 425-449 19-43 (151)
423 PRK11022 dppD dipeptide transp 95.8 0.0067 1.5E-07 66.9 3.7 27 424-450 32-58 (326)
424 PRK10070 glycine betaine trans 95.8 0.0061 1.3E-07 69.1 3.5 29 424-452 53-81 (400)
425 PRK10418 nikD nickel transport 95.8 0.0063 1.4E-07 64.4 3.3 28 424-451 28-55 (254)
426 PRK14241 phosphate transporter 95.8 0.0055 1.2E-07 65.0 2.8 27 424-450 29-55 (258)
427 PRK13975 thymidylate kinase; P 95.8 0.0078 1.7E-07 60.7 3.8 26 426-451 3-28 (196)
428 PRK13546 teichoic acids export 95.8 0.006 1.3E-07 65.3 3.1 28 424-451 49-76 (264)
429 PRK13636 cbiO cobalt transport 95.8 0.0063 1.4E-07 65.6 3.3 28 424-451 31-58 (283)
430 COG1129 MglA ABC-type sugar tr 95.8 0.0035 7.5E-08 72.2 1.3 36 424-461 33-68 (500)
431 CHL00131 ycf16 sulfate ABC tra 95.8 0.0062 1.3E-07 64.2 3.1 25 424-448 32-56 (252)
432 cd03299 ABC_ModC_like Archeal 95.8 0.0064 1.4E-07 63.6 3.2 28 424-451 24-51 (235)
433 PRK10253 iron-enterobactin tra 95.8 0.0058 1.3E-07 65.1 2.9 28 424-451 32-59 (265)
434 cd00267 ABC_ATPase ABC (ATP-bi 95.8 0.0068 1.5E-07 59.2 3.1 36 425-462 25-60 (157)
435 PRK14274 phosphate ABC transpo 95.8 0.0065 1.4E-07 64.4 3.3 27 424-450 37-63 (259)
436 PLN02199 shikimate kinase 95.8 0.01 2.2E-07 64.3 4.6 38 425-462 102-139 (303)
437 TIGR02142 modC_ABC molybdenum 95.8 0.0062 1.3E-07 67.9 3.2 26 426-451 24-49 (354)
438 PRK11889 flhF flagellar biosyn 95.8 0.0077 1.7E-07 67.6 3.9 37 423-459 239-280 (436)
439 PRK10744 pstB phosphate transp 95.8 0.0058 1.3E-07 64.9 2.8 27 424-450 38-64 (260)
440 cd03236 ABC_RNaseL_inhibitor_d 95.8 0.0059 1.3E-07 65.0 2.8 28 424-451 25-52 (255)
441 COG0324 MiaA tRNA delta(2)-iso 95.8 0.0081 1.8E-07 65.3 3.8 41 424-464 2-44 (308)
442 PRK13642 cbiO cobalt transport 95.7 0.0072 1.6E-07 64.9 3.4 28 424-451 32-59 (277)
443 TIGR00968 3a0106s01 sulfate AB 95.7 0.0072 1.6E-07 63.3 3.3 27 424-450 25-51 (237)
444 PRK15093 antimicrobial peptide 95.7 0.0079 1.7E-07 66.4 3.7 27 424-450 32-58 (330)
445 cd03283 ABC_MutS-like MutS-lik 95.7 0.0077 1.7E-07 61.7 3.4 23 426-448 26-48 (199)
446 cd03288 ABCC_SUR2 The SUR doma 95.7 0.0082 1.8E-07 63.7 3.7 35 424-460 46-80 (257)
447 PRK14245 phosphate ABC transpo 95.7 0.0071 1.5E-07 63.7 3.2 26 424-449 28-53 (250)
448 PRK13640 cbiO cobalt transport 95.7 0.0066 1.4E-07 65.4 3.0 28 424-451 32-59 (282)
449 PRK14262 phosphate ABC transpo 95.7 0.0065 1.4E-07 64.0 2.9 27 424-450 28-54 (250)
450 cd01131 PilT Pilus retraction 95.7 0.008 1.7E-07 61.4 3.4 24 427-450 3-26 (198)
451 PRK09580 sufC cysteine desulfu 95.7 0.0072 1.6E-07 63.4 3.1 26 424-449 26-51 (248)
452 cd03274 ABC_SMC4_euk Eukaryoti 95.7 0.0082 1.8E-07 62.1 3.5 25 426-450 26-50 (212)
453 PRK14251 phosphate ABC transpo 95.7 0.0067 1.5E-07 63.9 2.9 27 424-450 29-55 (251)
454 PRK10419 nikE nickel transport 95.7 0.0073 1.6E-07 64.6 3.1 27 424-450 37-63 (268)
455 TIGR00064 ftsY signal recognit 95.7 0.0091 2E-07 64.2 3.9 37 423-459 70-111 (272)
456 PRK14256 phosphate ABC transpo 95.7 0.007 1.5E-07 63.9 3.0 27 424-450 29-55 (252)
457 PRK14974 cell division protein 95.7 0.0097 2.1E-07 65.9 4.1 27 423-449 138-164 (336)
458 PRK13634 cbiO cobalt transport 95.7 0.0077 1.7E-07 65.2 3.3 27 425-451 33-59 (290)
459 PRK13633 cobalt transporter AT 95.7 0.0075 1.6E-07 64.9 3.2 28 424-451 35-62 (280)
460 PRK14248 phosphate ABC transpo 95.7 0.0074 1.6E-07 64.4 3.1 25 425-449 47-71 (268)
461 cd03273 ABC_SMC2_euk Eukaryoti 95.7 0.0088 1.9E-07 63.2 3.6 27 425-451 25-51 (251)
462 PRK09473 oppD oligopeptide tra 95.7 0.0084 1.8E-07 66.3 3.6 38 425-462 42-80 (330)
463 PLN00020 ribulose bisphosphate 95.7 0.017 3.6E-07 64.3 5.8 35 422-456 145-179 (413)
464 PRK14235 phosphate transporter 95.6 0.008 1.7E-07 64.2 3.2 27 424-450 44-70 (267)
465 TIGR03522 GldA_ABC_ATP gliding 95.6 0.0079 1.7E-07 65.5 3.2 28 424-451 27-54 (301)
466 PRK13547 hmuV hemin importer A 95.6 0.0067 1.4E-07 65.2 2.6 27 425-451 27-53 (272)
467 PRK14253 phosphate ABC transpo 95.6 0.0084 1.8E-07 63.1 3.3 27 424-450 28-54 (249)
468 PRK14238 phosphate transporter 95.6 0.008 1.7E-07 64.4 3.1 27 424-450 49-75 (271)
469 PRK14273 phosphate ABC transpo 95.6 0.0072 1.6E-07 63.8 2.8 27 425-451 33-59 (254)
470 cd03291 ABCC_CFTR1 The CFTR su 95.6 0.0082 1.8E-07 64.9 3.2 28 424-451 62-89 (282)
471 cd03272 ABC_SMC3_euk Eukaryoti 95.6 0.0084 1.8E-07 62.7 3.2 26 425-450 23-48 (243)
472 PRK14261 phosphate ABC transpo 95.6 0.0072 1.6E-07 63.8 2.7 27 424-450 31-57 (253)
473 cd03278 ABC_SMC_barmotin Barmo 95.6 0.0099 2.2E-07 60.7 3.6 24 427-450 24-47 (197)
474 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.0093 2E-07 60.8 3.4 26 424-449 25-50 (200)
475 PRK14244 phosphate ABC transpo 95.6 0.0084 1.8E-07 63.2 3.2 27 424-450 30-56 (251)
476 PRK14237 phosphate transporter 95.6 0.008 1.7E-07 64.2 3.0 27 424-450 45-71 (267)
477 PRK14240 phosphate transporter 95.6 0.0077 1.7E-07 63.4 2.8 27 424-450 28-54 (250)
478 PRK14270 phosphate ABC transpo 95.6 0.0082 1.8E-07 63.3 3.0 27 424-450 29-55 (251)
479 COG0488 Uup ATPase components 95.6 0.0037 8.1E-08 73.1 0.4 27 424-450 28-54 (530)
480 PRK14249 phosphate ABC transpo 95.6 0.008 1.7E-07 63.4 2.9 27 424-450 29-55 (251)
481 cd03300 ABC_PotA_N PotA is an 95.6 0.0093 2E-07 62.2 3.3 28 424-451 25-52 (232)
482 COG2954 Uncharacterized protei 95.6 0.025 5.3E-07 54.2 5.7 90 191-289 39-133 (156)
483 PRK14268 phosphate ABC transpo 95.6 0.0075 1.6E-07 64.0 2.6 27 424-450 37-63 (258)
484 PRK09984 phosphonate/organopho 95.6 0.0079 1.7E-07 63.9 2.8 28 424-451 29-56 (262)
485 PRK14729 miaA tRNA delta(2)-is 95.5 0.01 2.2E-07 64.7 3.6 38 426-464 5-44 (300)
486 cd03116 MobB Molybdenum is an 95.5 0.012 2.6E-07 58.3 3.7 25 426-450 2-26 (159)
487 PRK11176 lipid transporter ATP 95.5 0.01 2.2E-07 70.4 3.9 28 425-452 369-396 (582)
488 COG2274 SunT ABC-type bacterio 95.5 0.0086 1.9E-07 72.4 3.3 29 424-452 498-526 (709)
489 PRK14239 phosphate transporter 95.5 0.0082 1.8E-07 63.2 2.7 25 425-449 31-55 (252)
490 COG0444 DppD ABC-type dipeptid 95.5 0.012 2.6E-07 64.0 3.9 40 424-463 30-72 (316)
491 PF03205 MobB: Molybdopterin g 95.5 0.011 2.3E-07 57.3 3.2 23 427-449 2-24 (140)
492 PRK14243 phosphate transporter 95.5 0.0099 2.2E-07 63.4 3.3 27 424-450 35-61 (264)
493 PF03029 ATP_bind_1: Conserved 95.5 0.0071 1.5E-07 63.8 2.1 21 430-450 1-21 (238)
494 PRK14255 phosphate ABC transpo 95.5 0.0089 1.9E-07 63.0 2.8 25 425-449 31-55 (252)
495 PRK14259 phosphate ABC transpo 95.5 0.0086 1.9E-07 64.1 2.7 27 424-450 38-64 (269)
496 PRK14265 phosphate ABC transpo 95.5 0.0087 1.9E-07 64.2 2.8 27 424-450 45-71 (274)
497 PRK14272 phosphate ABC transpo 95.4 0.0094 2E-07 62.8 2.9 27 424-450 29-55 (252)
498 COG1618 Predicted nucleotide k 95.4 0.014 3.1E-07 57.6 3.8 38 424-461 4-41 (179)
499 PRK14490 putative bifunctional 95.4 0.011 2.5E-07 66.2 3.7 28 423-450 3-30 (369)
500 COG1763 MobB Molybdopterin-gua 95.4 0.011 2.3E-07 58.7 3.0 26 425-450 2-27 (161)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=9.4e-77 Score=667.92 Aligned_cols=376 Identities=32% Similarity=0.622 Sum_probs=351.2
Q ss_pred ccceeeecCCCCcccchhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCccccccceecccccccc
Q 004177 390 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF 468 (770)
Q Consensus 390 ~~~~~~~~~~~~~~~~e~~~~~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy~~~~~~~~ 468 (770)
+++++++|+|+.++|++||+++++++|.+.++.+++++|||+||||||||||++.|++.+ ++.+|++|+|+.......+
T Consensus 30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~ 109 (656)
T PLN02318 30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG 109 (656)
T ss_pred CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence 478999999999999999999999999999888889999999999999999999999988 4568999999865444557
Q ss_pred CccccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChh
Q 004177 469 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 548 (770)
Q Consensus 469 n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d 548 (770)
++++|.++|.+.+.++|..|++|+.+.+|.||+.++++.+.... ...+.+|||+||+|++++.+++++|++|||+++.+
T Consensus 110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i-~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTL-EVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCcee-ecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 88999999999999999999999999999999999987643233 34578999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCcCcch--hhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCC
Q 004177 549 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 626 (770)
Q Consensus 549 ~rL~Rri~RD~~~rG~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~m 626 (770)
.++.||+.||..++|++.+. .+|...++|+|.+||+|++++||++|.|+|+++...+++.+++++.+.+..+.+...|
T Consensus 189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L 268 (656)
T PLN02318 189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL 268 (656)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence 99999999999999998875 6888899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhccccccceeeecCCCCCCCCCCCCCCeEEEEEeCceeeEEeeeeccccCeeeccccceEEehhhHHHHHhhhhh
Q 004177 627 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ 706 (770)
Q Consensus 627 t~e~v~~fv~~y~~~Yl~~~~~~~~~~~~~~~~i~~r~~~~r~~l~~~~~~~~~~~~~~p~~~f~~~~~~~~gl~~lgy~ 706 (770)
.. ...+.+++|+|+||.+|+.+. .+|++|||||+|+|||+|||+|||+||||||+||++|||+|+++||||+||||
T Consensus 269 ~~-~~~~~~~~~~DiYl~~P~~d~---~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 269 SE-DHTETTEETYDIYLLPPGEDP---ETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred hh-ccccccceeeEEEecCCCCCc---hhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 86 477888999999999998764 47899999999999999999999999999999999999999999999999999
Q ss_pred hhhheeeeeeEEecCeEEEEEeccccCCCceEEEecCCHHHHHHhhhhcccccccccchhhccC
Q 004177 707 AVAYIEASAFIYQDGKILIEVDHLQDAPSPYLQIKGVDKEAVAAAGSTLKLDGSYTTKVMSLAL 770 (770)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 770 (770)
++|++||++++|++|+|+|++|||++|+++|+||+|.+|+.|.++|++|||+|+||||||||.+
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i 408 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQI 408 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999963
No 2
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.6e-57 Score=509.64 Aligned_cols=327 Identities=30% Similarity=0.563 Sum_probs=290.3
Q ss_pred CCcccCC----CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhc
Q 004177 1 MENYRVG----VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL 76 (770)
Q Consensus 1 md~y~~~----~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l 76 (770)
||+|++. ..+|++|+++|++.+.++|..|++|+++.+|.|||.++.+.+...+.+++.+||||||+|+|+++++++
T Consensus 97 mDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~L 176 (656)
T PLN02318 97 MDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPL 176 (656)
T ss_pred EcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhh
Confidence 6787653 246789999999999999999999999999999999999876656778999999999999999999999
Q ss_pred CCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC--ccchhhhcccccC
Q 004177 77 LDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCR 149 (770)
Q Consensus 77 ~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~--~~~~~~~~~lk~~ 149 (770)
+|++|||++|.++++.||+.||+.+| +++++++++| +|+|..||+|++++||+||.|+|+ +++.+|.||||+.
T Consensus 177 lDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~ 256 (656)
T PLN02318 177 LDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSS 256 (656)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCC
Confidence 99999999999999999999999999 8999999876 899999999999999999999998 4999999999999
Q ss_pred CCCCCccccccc----ccc-cceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEE
Q 004177 150 SEAPGACSISAF----QGN-EAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEV 224 (770)
Q Consensus 150 ~~~~~~~~g~~~----~~~-~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev 224 (770)
+++..|++-..+ .++ +.-+|+||++|++||+++|+++ |||.++++++|||| +|+.+++|+|.++.++||
T Consensus 257 ~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~L-----RvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv 330 (656)
T PLN02318 257 RSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYL-----RMRNRDGKYSLMFE-EWVTDEPFIISPRITFEV 330 (656)
T ss_pred ccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceE-----EEEecCCEEEEEEe-cccccCCeecCcceeEEE
Confidence 999988754432 222 2346999999999998887666 99999999999999 999999999999999999
Q ss_pred ehhHHHHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecChhHHHHHHHHcCCCCCcccchHHHHHHh
Q 004177 225 GRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMVLE 304 (770)
Q Consensus 225 ~v~~~~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~~~~~i~~~a~~Lgl~~~~~~~sYleL~l~ 304 (770)
+|.+.++|++|||++++.++|.|++|++|+++|++|+|+|||.+|+|||+.+++.|.++|++|||+++++++|||||++.
T Consensus 331 ~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~ 410 (656)
T PLN02318 331 SVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQL 410 (656)
T ss_pred eeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -hcCCCCCCCCCCCCCCCcccccceeeecCCC
Q 004177 305 -KKGVPRLNTPPLFPNTPTTSNQESVIAAPRP 335 (770)
Q Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (770)
+.-..-++-|.-|.+. ...+|-.+.+|++
T Consensus 411 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 440 (656)
T PLN02318 411 EKLVNEVMALPEDLKTK--LSLDDDLVSSPKE 440 (656)
T ss_pred HHhHHHHhhccHHhhhh--cccccccccCcHH
Confidence 5444445555555543 3345555566655
No 3
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=269.11 Aligned_cols=141 Identities=23% Similarity=0.393 Sum_probs=132.4
Q ss_pred ccccccccccceeeeeccCCCCCCcchhhhccCCeeeeE-EeCCEEEEEecceeecCCCcccCceeEEEEeh----hHHH
Q 004177 156 CSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG 230 (770)
Q Consensus 156 ~~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR-~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~~ 230 (770)
.+|+.|+..+.|+|+||++|||||+.||+|+ ||| ..++++++|||||+++..+ |+|+|+|+.| ++..
T Consensus 22 ~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~~ 93 (178)
T COG1437 22 SLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKALE 93 (178)
T ss_pred hccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHHH
Confidence 5788999999999999999999999999999 999 7789999999999999888 9999999999 9999
Q ss_pred HHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCC-CCcccchHHH
Q 004177 231 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGIN-GPWITKSYLE 300 (770)
Q Consensus 231 iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~~-------~~i~~~a~~Lgl~-~~~~~~sYle 300 (770)
+|++|||.++++++|.|++|..++++|+||.|+|||. |+|||.+ +. +.+.+++++|||+ ++.+++||+|
T Consensus 94 il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlE 172 (178)
T COG1437 94 ILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLE 172 (178)
T ss_pred HHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHH
Confidence 9999999999999999999999999999999999999 9999999 22 5689999999997 5679999999
Q ss_pred HHHhh
Q 004177 301 MVLEK 305 (770)
Q Consensus 301 L~l~~ 305 (770)
|+..+
T Consensus 173 Ll~~~ 177 (178)
T COG1437 173 LLLEK 177 (178)
T ss_pred HHhcc
Confidence 99865
No 4
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.7e-33 Score=280.81 Aligned_cols=175 Identities=33% Similarity=0.534 Sum_probs=158.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC---ccccccceecccc------ccccCccccccccHHHHHHHHHHHhcCCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 493 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~---~vis~Ddfy~~~~------~~~~n~d~p~t~D~~ll~~~L~~L~~g~~ 493 (770)
.++++|||+|+|||||||+|+.|...++. .+|+.|+||+... ....||++|.++|++++.+.|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45699999999999999999999999984 4899999999743 35678999999999999999999999999
Q ss_pred ccccccccccCccCCccceeeccCccEEEEEccccchh-hhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch--hh
Q 004177 494 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 570 (770)
Q Consensus 494 v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~-~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~--~q 570 (770)
+.+|.||+.+|.|.. +.....|.+|||+||+|++.+ .+++++|++|||+++.|.|+.||+.||..+||++++. .|
T Consensus 86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999985 222346789999999999985 8999999999999999999999999999999999986 79
Q ss_pred HHhhccchhhhccccccCcccEEEcCCCC
Q 004177 571 IMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 571 ~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
|.+.++|+|.+||+|+++.||++|+....
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~~ 192 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGGK 192 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCCc
Confidence 99999999999999999999999986653
No 5
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.97 E-value=1.2e-31 Score=263.58 Aligned_cols=223 Identities=23% Similarity=0.348 Sum_probs=166.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh--------CCccccccceeccccc----ccc--------CccccccccHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSLLS 482 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L--------~~~vis~Ddfy~~~~~----~~~--------n~d~p~t~D~~ll~ 482 (770)
+-|++||++||+||||||++.+|...+ ....+|.||||.+++. .+. .++.+++||+.++.
T Consensus 29 ~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 29 DVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 349999999999999999999988655 2557899999998541 111 24679999999999
Q ss_pred HHHHHHhcC----CCcccccccccc----CccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHH
Q 004177 483 KNISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 554 (770)
Q Consensus 483 ~~L~~L~~g----~~v~~P~yD~s~----g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rr 554 (770)
++|+.+..+ ..+.+|.||++. |+|.+...|...+|.+++|+|||++++..+. +|..-.++.
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~--------- 177 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP--------- 177 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------
Confidence 999998764 358999999996 6888888887777899999999999874432 111111111
Q ss_pred HHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhcc
Q 004177 555 VQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSS 634 (770)
Q Consensus 555 i~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~f 634 (770)
++-|..-. +.-+..+.+.+.++|...-...---|+++|.|||+|||+|+ +++.+|||||+|.+|
T Consensus 178 l~Gdl~~V------N~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~----------~~~~kGMsDEeV~~F 241 (282)
T KOG2878|consen 178 LQGDLEVV------NKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALR----------QDGQKGMSDEEVNDF 241 (282)
T ss_pred ccccHHHH------hhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHH----------HhhccCCCHHHHHHH
Confidence 00011111 22233455666677654211111123678999999999987 456689999999999
Q ss_pred ccccceee-ecCCCCCCCCCCCCCCeEEEEEeCceeeEE
Q 004177 635 AQNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFALL 672 (770)
Q Consensus 635 v~~y~~~Y-l~~~~~~~~~~~~~~~~i~~r~~~~r~~l~ 672 (770)
|+||||+| +|++.+.+++++....||.+-++++||++.
T Consensus 242 V~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~~ 280 (282)
T KOG2878|consen 242 VSRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPIL 280 (282)
T ss_pred HHhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCccccc
Confidence 99999999 999999999998778999999999999874
No 6
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.96 E-value=1.7e-28 Score=244.74 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=127.2
Q ss_pred cccccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh----hHHHHH
Q 004177 157 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL 232 (770)
Q Consensus 157 ~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~~iL 232 (770)
+|+.+.....|+|+||++|+++|..++.+| |||+.++++.||||||+.++.. |.|.|+|+.| +|.++|
T Consensus 23 ~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL 94 (174)
T TIGR00318 23 KGFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQIL 94 (174)
T ss_pred cCcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHH
Confidence 567888999999999999999999998776 9999888999999999876554 9999999999 899999
Q ss_pred HhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCh---------hHHHHHHHHcCCCCCcccchHHHHHH
Q 004177 233 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL 303 (770)
Q Consensus 233 ~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~~~---------~~i~~~a~~Lgl~~~~~~~sYleL~l 303 (770)
.+|||+++++++|.|++|++++++|+||.|+|||. |||||++.+ +.|.++|++||+.++.+++||+||++
T Consensus 95 ~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 95 KKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred HHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 99999999999999999999999999999999999 999999832 58999999999966679999999985
No 7
>PTZ00301 uridine kinase; Provisional
Probab=99.96 E-value=1.5e-28 Score=252.05 Aligned_cols=174 Identities=28% Similarity=0.462 Sum_probs=151.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C---Cccccccceecccc------ccccCccccccccHHHHHHHHHHHhc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRN 490 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L----~---~~vis~Ddfy~~~~------~~~~n~d~p~t~D~~ll~~~L~~L~~ 490 (770)
+.++|||+|||||||||||+.|++.+ + +.++++|+||++.. .+..+|++|.++|++++.+.|..|+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~ 81 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKS 81 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHc
Confidence 35899999999999999999998765 2 34889999998742 23468999999999999999999999
Q ss_pred CCCccccccccccCccCCccceeeccCccEEEEEccccc-hhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-
Q 004177 491 GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 568 (770)
Q Consensus 491 g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l-~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~- 568 (770)
|+.+..|.||+..+++.. ..+.+ .+.+|||+||+|++ .+++++++|++|||+++.++++.||+.||..++|++.+.
T Consensus 82 g~~i~~P~yd~~~~~~~~-~~~~i-~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v 159 (210)
T PTZ00301 82 GKTVQIPQYDYVHHTRSD-TAVTM-TPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESV 159 (210)
T ss_pred CCcccCCCcccccCCcCC-ceEEe-CCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHH
Confidence 999999999999998874 23333 56799999999998 489999999999999999999999999999999998875
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
.+|...+.|++.+||+|++.+||+||.+.-+
T Consensus 160 ~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 160 IEQYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 5677789999999999999999999976543
No 8
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=2.1e-28 Score=247.96 Aligned_cols=170 Identities=31% Similarity=0.564 Sum_probs=142.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---------Cccccccceecccc--------ccccCccccccccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR 489 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~---------~~vis~Ddfy~~~~--------~~~~n~d~p~t~D~~ll~~~L~~L~ 489 (770)
||||+|||||||||||+.|+..|+ ..++++|+||.... ...+++++|.++|++++.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999996 23667899987622 1346788999999999999999999
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
+|+.+..|.||+.++++.++ .....+.+|||+||+|+++ +.+++++|++||++++.++++.|++.||..+||++.+.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~--~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPW--IIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEE--EEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred CCCcccccccccccccceee--eeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 99999999999999988752 2334578999999999987 57999999999999999999999999999999998875
Q ss_pred --hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 --NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 --~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
.+|. .++|+|.+||+|++++||+||++...
T Consensus 159 ~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~ 190 (194)
T PF00485_consen 159 VIAQYE-RVRPGYERYIEPQKERADIVIPSGPT 190 (194)
T ss_dssp HHHHHH-THHHHHHHCTGGGGGG-SEEEESCTS
T ss_pred EEEEee-cCChhhhhheeccccccEEEECCCCC
Confidence 3444 89999999999999999999997654
No 9
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.5e-28 Score=249.62 Aligned_cols=134 Identities=30% Similarity=0.520 Sum_probs=126.1
Q ss_pred CCcccCC----------CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch
Q 004177 1 MENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 70 (770)
Q Consensus 1 md~y~~~----------~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~ 70 (770)
.|||+.+ ..|||||+|||+++|.++|..|++|++|.+|.|||.+|.+... .+.+.|.+||||||+|+|+
T Consensus 42 ~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~-~i~~~p~~VVIvEGi~~l~ 120 (218)
T COG0572 42 LDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPE-TIKVEPNDVVIVEGILLLY 120 (218)
T ss_pred ccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCcccccccchhcccccCC-ccccCCCcEEEEecccccc
Confidence 4788874 4799999999999999999999999999999999999999864 5678999999999999999
Q ss_pred -HHhhhcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCC
Q 004177 71 -ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 71 -~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
++|++++|+|||||+|.|+|+.||+.||+.+| +++++++++| +|+|+.||+|++++||+|||.+-
T Consensus 121 d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 121 DERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred cHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecCC
Confidence 79999999999999999999999999999999 9999999986 79999999999999999999864
No 10
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.95 E-value=1.7e-28 Score=268.60 Aligned_cols=232 Identities=16% Similarity=0.225 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHcC-----CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceeccccc-cc---c-------
Q 004177 410 LSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---F------- 468 (770)
Q Consensus 410 ~~~~~i~~l~~~~-----~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~-~~---~------- 468 (770)
||.+.+..+.+.. .+|++|||+|++|||||||++.|...+. +.+|++||||.+.+. .. .
T Consensus 192 w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL 271 (460)
T PLN03046 192 WCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALL 271 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhh
Confidence 5666677776532 2799999999999999999999998873 567899999986321 11 1
Q ss_pred -CccccccccHHHHHHHHHHH----hcCCCcccccccccc----CccCCcccee-eccCccEEEEEccccch-hhhhhcC
Q 004177 469 -KYDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLET----GARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKSL 537 (770)
Q Consensus 469 -n~d~p~t~D~~ll~~~L~~L----~~g~~v~~P~yD~s~----g~r~~~~~~~-~~~~~~VVIvEG~~~l~-~~l~~~l 537 (770)
.++.|++||+.++.+++..| +.|+.+.+|+||++. |+|.+.+.|. +..|.+||||||||+++ +...+.+
T Consensus 272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l 351 (460)
T PLN03046 272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVV 351 (460)
T ss_pred cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHh
Confidence 23568999999999999988 578899999999998 4576554553 45788999999999987 3222222
Q ss_pred CeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhcccccc
Q 004177 538 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 617 (770)
Q Consensus 538 D~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~ 617 (770)
+.. +.+. + ..+..+.. |...+...++.+|.-.. -| ++++|.||++||+.|+...+
T Consensus 352 ~~~-----D~~l---~-------~VN~~L~~--Y~~~w~~~~D~li~L~a--~d--~~~Vy~WRlqQE~kLr~~gg---- 406 (460)
T PLN03046 352 KAV-----DPQL---E-------VVNKNLEA--YYDAWDKFIDAWVVIKI--QD--PSCVYQWRLQAEIAMRADGK---- 406 (460)
T ss_pred hcc-----ChhH---H-------HHHHHHHH--HHHHHHHhhceeEEeeC--CC--hhHHHHHHHHHHHHHHHcCC----
Confidence 211 1111 1 11222211 21111112222221110 11 25679999999999984422
Q ss_pred chhhhccCCChhhhhccccccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeeEE
Q 004177 618 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFALL 672 (770)
Q Consensus 618 ~~~~~~~~mt~e~v~~fv~~y~~~Y-l~~~~~~~~~~~--~~~~~i~~r~~~~r~~l~ 672 (770)
.|||+|+|++||++|||+| +|+|++..++++ ..+..|+|.++..|..+.
T Consensus 407 ------~GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~~~ 458 (460)
T PLN03046 407 ------PGMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPIL 458 (460)
T ss_pred ------CCCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCccC
Confidence 3899999999999999999 999999887764 346789999999998653
No 11
>PLN02348 phosphoribulokinase
Probab=99.94 E-value=1e-26 Score=254.69 Aligned_cols=231 Identities=21% Similarity=0.321 Sum_probs=177.0
Q ss_pred HHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC--------------------Cccccccceecccc----ccccCcccc
Q 004177 418 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQ----VKDFKYDDF 473 (770)
Q Consensus 418 l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~--------------------~~vis~Ddfy~~~~----~~~~n~d~p 473 (770)
...+.++|++|||+|+||||||||++.|++.|+ +.+|++||||.... ....+..+|
T Consensus 42 ~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP 121 (395)
T PLN02348 42 ALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDP 121 (395)
T ss_pred hhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCc
Confidence 344567899999999999999999999999985 24899999986422 112345678
Q ss_pred ccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHH
Q 004177 474 SSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLI 552 (770)
Q Consensus 474 ~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~ 552 (770)
.++|++++.+.|..|++|+.+..|.||+.++...+.. ...+.++||+||+|+++ +.+++++|++|||+++.++++.
T Consensus 122 ~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e---~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~ 198 (395)
T PLN02348 122 RANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE---LIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFA 198 (395)
T ss_pred ccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE---EcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHH
Confidence 9999999999999999999999999999999766432 34568999999999987 4689999999999999999999
Q ss_pred HHHHhcccccCcCcch-hhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhh-
Q 004177 553 SRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAK- 630 (770)
Q Consensus 553 Rri~RD~~~rG~~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~- 630 (770)
|+++||..++|.+.+. .+.+..+.|.|.+||+|.+++||+||+- +...+.+.+. ..+.|...-
T Consensus 199 RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v-~p~~l~~~~~--------------~~~~l~vrli 263 (395)
T PLN02348 199 WKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV-LPTQLIPDDN--------------EGKVLRVRLI 263 (395)
T ss_pred HHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe-cCCcCCCCCC--------------CCceEEEEEE
Confidence 9999999999998775 4556678999999999999999999864 3333332111 111222222
Q ss_pred hhccccccceeeecCCCCCC-----CCCCCCC-CeEEEEEeC
Q 004177 631 FCSSAQNFIDMYLRLPGIPT-----NGQLTES-DCIRVRICE 666 (770)
Q Consensus 631 v~~fv~~y~~~Yl~~~~~~~-----~~~~~~~-~~i~~r~~~ 666 (770)
.++-+..|-|.||+.+|-+- ...++|+ ..|++...-
T Consensus 264 ~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (395)
T PLN02348 264 MKEGVKNFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGP 305 (395)
T ss_pred ecCCCCCCCcceeeccCCccccccccccccCCCCCeEEEeec
Confidence 24457788899999887521 2234453 567766643
No 12
>PLN02796 D-glycerate 3-kinase
Probab=99.94 E-value=1.3e-27 Score=258.39 Aligned_cols=231 Identities=18% Similarity=0.265 Sum_probs=161.0
Q ss_pred HHHHHHHHHHH-----cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceeccccc-ccc----------
Q 004177 410 LSVQAIQALLE-----NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDF---------- 468 (770)
Q Consensus 410 ~~~~~i~~l~~-----~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~-~~~---------- 468 (770)
++.+.+..+.+ ...+|++|||+|++|||||||++.|...+. +..+++|+||.+... ...
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 45555555542 124789999999999999999999999885 457899999987421 111
Q ss_pred -CccccccccHHHHHHHHHHHh----cCCCcccccccccc----CccCCcccee-eccCccEEEEEccccch-hhhhhcC
Q 004177 469 -KYDDFSSLDLSLLSKNISDIR----NGRRTKVPIFDLET----GARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKSL 537 (770)
Q Consensus 469 -n~d~p~t~D~~ll~~~L~~L~----~g~~v~~P~yD~s~----g~r~~~~~~~-~~~~~~VVIvEG~~~l~-~~l~~~l 537 (770)
.++.|++||++++.++|..|+ .|+.+.+|.||++. |+|.+.+.|. +..+.+|||+||||+++ +...+.+
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l 239 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAV 239 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHh
Confidence 135689999999999999998 67889999999998 4566544543 34678999999999987 3222222
Q ss_pred CeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhcccccc
Q 004177 538 DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQV 617 (770)
Q Consensus 538 D~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~ 617 (770)
+. .+.+.. ..+..+.. |...++..++.+|.-.. - -++++|.||++||+.|+..+++
T Consensus 240 ~~-----~~~~l~----------~vN~~L~~--y~~~w~~~~d~~i~L~a--~--~~~~v~~WR~qQE~~l~~~~~~--- 295 (347)
T PLN02796 240 KA-----VDPQLE----------VVNKNLEA--YYDAWDKLVDSWIVIKV--D--DPSWVYEWRLQAEIAMRAKGKP--- 295 (347)
T ss_pred hc-----cChhHH----------HHHHHHHH--HHHHHHHhhceEEEEeC--C--CchHHHHHHHHHHHHHHHhCCC---
Confidence 21 111111 11222221 21111222333332111 1 1357899999999999855443
Q ss_pred chhhhccCCChhhhhccccccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeeE
Q 004177 618 AYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFAL 671 (770)
Q Consensus 618 ~~~~~~~~mt~e~v~~fv~~y~~~Y-l~~~~~~~~~~~--~~~~~i~~r~~~~r~~l 671 (770)
+||+++|++||++|||+| +|+|++..+++. .....|+|.++..|..+
T Consensus 296 -------gMsde~v~~FV~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~~ 345 (347)
T PLN02796 296 -------GMSDEEVADFVSRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNPL 345 (347)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCcc
Confidence 899999999999999999 999999887664 33678999999998654
No 13
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.93 E-value=2.5e-26 Score=240.09 Aligned_cols=168 Identities=18% Similarity=0.331 Sum_probs=144.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecccc-----------ccccCccc--cccccHHHHHHHHHHH
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-----------VKDFKYDD--FSSLDLSLLSKNISDI 488 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~-----------~~~~n~d~--p~t~D~~ll~~~L~~L 488 (770)
+|||+|+|||||||++++|++.++ +.+|++|+||+... ....|+++ |.++|+++|.+.+..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998874 56899999999411 12368888 9999999999999999
Q ss_pred hcCCCccccccccc----------cCccCCccceeeccCccEEEEEccccch----hhhhhcCCeEEEEEcChhHHHHHH
Q 004177 489 RNGRRTKVPIFDLE----------TGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISR 554 (770)
Q Consensus 489 ~~g~~v~~P~yD~s----------~g~r~~~~~~~~~~~~~VVIvEG~~~l~----~~l~~~lD~~I~Vd~~~d~rL~Rr 554 (770)
++|+.+..|.|+++ .|.+.++.. ...+.++||+||++.+. .++++++|++|||+++.++++.||
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~--~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irR 158 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWED--LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQK 158 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCccc--ccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHH
Confidence 99999999999884 344443322 24679999999999543 689999999999999999999999
Q ss_pred HHhcccccCcCcch--hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 555 VQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 555 i~RD~~~rG~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
++||..+||++.+. .+|...+ |+|.+||.|++++||++|+..
T Consensus 159 I~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~ 202 (277)
T cd02029 159 IHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEecc
Confidence 99999999999986 6888777 999999999999999998754
No 14
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.92 E-value=5.2e-25 Score=220.73 Aligned_cols=168 Identities=41% Similarity=0.663 Sum_probs=140.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-----CCccccccceeccc---cccccCccccccccHHHHHHHHHHHhcCCCccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 498 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L-----~~~vis~Ddfy~~~---~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 498 (770)
+|||+|++||||||||+.|+..+ ++.++++|+||++. .....+++.+..+|++++.+.|..|++|+.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 36789999999854 12234567777799999999999999999999999
Q ss_pred cccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhH-HHHHHHHhcccccCcCcchhhHHhhccc
Q 004177 499 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQNDIMMTVFP 577 (770)
Q Consensus 499 yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~-rL~Rri~RD~~~rG~~l~~~q~~~~v~p 577 (770)
||+.++.+...... ...+.+|||+||++++++.+++++|++||++++.+. |+.||+.||..+||++.+..-..+.+.|
T Consensus 81 yd~~~~~~~~~~~~-~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~ 159 (179)
T cd02028 81 YDFRTGKRRGYRKL-KLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVP 159 (179)
T ss_pred ceeECCccCCCceE-EeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhccccc
Confidence 99999988753222 345789999999999999999999999999999998 9999999999999998875222244566
Q ss_pred hhhhcc-ccccCcccEEEc
Q 004177 578 MFQQHI-EPHLVHAHLKIR 595 (770)
Q Consensus 578 ~~~~~I-~p~~~~ADivI~ 595 (770)
++..|+ .|.++.||++++
T Consensus 160 ~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 160 SGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CchhhcCCCchhccceecc
Confidence 666665 567899998865
No 15
>PRK05439 pantothenate kinase; Provisional
Probab=99.92 E-value=1.5e-24 Score=233.33 Aligned_cols=230 Identities=16% Similarity=0.222 Sum_probs=169.7
Q ss_pred cccceeecccCCCCCCCccccCCccccceeeecCCCCcccchhhHHHH---HHHH--------------HHHH--cCCCC
Q 004177 365 VLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSV---QAIQ--------------ALLE--NKGLP 425 (770)
Q Consensus 365 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~i~--------------~l~~--~~~~p 425 (770)
.-.+|+.+..+.+.+|++ ..-..+.++-+.++..|..-.-. +.|. .... ..+.|
T Consensus 14 ~r~~w~~l~~~~~~~l~~-------~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~ 86 (311)
T PRK05439 14 SREQWAALRDSTPLTLTE-------EELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVP 86 (311)
T ss_pred CHHHHHHHHhcCCCCCCH-------HHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCC
Confidence 457899778888888877 23333555555555444322111 1111 1111 35689
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceeccccc----ccc-CccccccccHHHHHHHHHHHhcCCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR 493 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~----~~~-n~d~p~t~D~~ll~~~L~~L~~g~~ 493 (770)
++|||+|++||||||+|+.|+..++ +.++++|+||.+... +.+ .++.|.++|++++.+.|..|+.|+.
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998763 568999999987532 222 3678999999999999999999997
Q ss_pred -ccccccccccCccCCccceeeccCccEEEEEccccch-hhh------hhcCCeEEEEEcChhHHHHHHHHhccccc---
Q 004177 494 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEI------RKSLDLWIAVVGGVHSHLISRVQRDKSRM--- 562 (770)
Q Consensus 494 -v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l------~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r--- 562 (770)
+..|.||+..+++.+... ....+.+|||+||++++. ++. ++.+|++|||+++.+....|++.|....+
T Consensus 167 ~v~~P~Yd~~~~d~~~~~~-~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~ 245 (311)
T PRK05439 167 NVTAPVYSHLIYDIVPGEK-QTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETA 245 (311)
T ss_pred eEEeeeEEeecCCcCCCce-EEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999875332 334578999999999985 444 89999999999999998888877776422
Q ss_pred ------------CcCcch------hhHHhhccchhhhccccccCcccEEEcCCCCCCC
Q 004177 563 ------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 602 (770)
Q Consensus 563 ------------G~~l~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l 602 (770)
|.+.++ .+|.....|++.+||.|++.+||+||..+.+...
T Consensus 246 ~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 246 FSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred hcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 211111 2334456799999999999999999987765433
No 16
>PTZ00301 uridine kinase; Provisional
Probab=99.91 E-value=1.1e-24 Score=223.47 Aligned_cols=135 Identities=24% Similarity=0.391 Sum_probs=124.3
Q ss_pred CCcccCC----------CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch
Q 004177 1 MENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 70 (770)
Q Consensus 1 md~y~~~----------~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~ 70 (770)
||+|+.+ ..+|++|+|||+++|.++|..|++|+++.+|.|||..+.+... ...+++.+||||||+|+|+
T Consensus 41 ~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~ 119 (210)
T PTZ00301 41 EDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFT 119 (210)
T ss_pred CCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcCCcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhC
Confidence 6888864 3588999999999999999999999999999999999998754 5678888999999999997
Q ss_pred -HHhhhcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC
Q 004177 71 -ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 71 -~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
+++++++|++|||++|.++++.||+.||+.+| +++++++.+| +|++..||+|++.+||+||+++-+
T Consensus 120 ~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 120 NAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred CHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 99999999999999999999999999999998 9999999876 799999999999999999987654
No 17
>COG4240 Predicted kinase [General function prediction only]
Probab=99.91 E-value=8.7e-26 Score=226.49 Aligned_cols=222 Identities=21% Similarity=0.319 Sum_probs=149.1
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C---Cccccccceeccccc-----ccc-----CccccccccHHHHHHH
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G---CEVVSLESYFKSEQV-----KDF-----KYDDFSSLDLSLLSKN 484 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L---~---~~vis~Ddfy~~~~~-----~~~-----n~d~p~t~D~~ll~~~ 484 (770)
..++|+++||+||+||||||++..|...| + ...+|+||||+++.. .+. .++-|++||..++.++
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 46789999999999999999999998876 2 456899999998541 111 2578999999999999
Q ss_pred HHHHhcCCC-cccccccccc----CccCCccceeeccCccEEEEEccccchhhh-hhcCCeEE-EEEcChhHHHHHHHHh
Q 004177 485 ISDIRNGRR-TKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEI-RKSLDLWI-AVVGGVHSHLISRVQR 557 (770)
Q Consensus 485 L~~L~~g~~-v~~P~yD~s~----g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l-~~~lD~~I-~Vd~~~d~rL~Rri~R 557 (770)
|+.+.+|+. |.+|.||+|. |+|.+..+|.. .+.+++|+||||+++..+ ..++.+.. -+.+..+....+-
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik-~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~d--- 201 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIK-FEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRAD--- 201 (300)
T ss_pred HHHHhcCCCCcccccccchhccCCCCCCCccccee-cceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHH---
Confidence 999988764 7999999975 68876555544 348999999999986322 11121110 0001111111000
Q ss_pred cccccCcCcchhhHHhhccchhhhccccc-cCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhcccc
Q 004177 558 DKSRMGCFMSQNDIMMTVFPMFQQHIEPH-LVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQ 636 (770)
Q Consensus 558 D~~~rG~~l~~~q~~~~v~p~~~~~I~p~-~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~fv~ 636 (770)
.+.-+..+.|.|++ |..- .-.|+ -|+++|.||++||+.|+. .+.+|||||||.+||+
T Consensus 202 ----------vN~kLa~Y~pL~~r-IdsLillta~-din~vy~WRlQqEhkliA----------r~~kgmsdeqv~efvn 259 (300)
T COG4240 202 ----------VNDKLAPYRPLFDR-IDSLILLTAP-DINTVYAWRLQQEHKLIA----------RLAKGMSDEQVSEFVN 259 (300)
T ss_pred ----------HHhhhhhhHHHHHH-hhheeEeccc-chHHHHHHHHHHHHHHHH----------HHhccCcHHHHHHHHH
Confidence 11122234444444 2211 00111 246889999999999873 3457999999999999
Q ss_pred ccceee-ecCCCCCCCCCCCCCCeEEEEEeCce
Q 004177 637 NFIDMY-LRLPGIPTNGQLTESDCIRVRICEGR 668 (770)
Q Consensus 637 ~y~~~Y-l~~~~~~~~~~~~~~~~i~~r~~~~r 668 (770)
+||+.| ||+..+..-..+.--.|+.+-.+.+|
T Consensus 260 ~ymrsl~lylq~ls~~~al~~~a~leI~~d~nr 292 (300)
T COG4240 260 AYMRSLELYLQRLSEWIALDLPAILEIAVDLNR 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcceeEEeecccc
Confidence 999999 99887664322333467777776544
No 18
>PRK15453 phosphoribulokinase; Provisional
Probab=99.91 E-value=2.8e-24 Score=226.34 Aligned_cols=173 Identities=18% Similarity=0.293 Sum_probs=144.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceec-ccc----------ccccCccc--cccccHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ----------VKDFKYDD--FSSLDLSLLSKN 484 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~-~~~----------~~~~n~d~--p~t~D~~ll~~~ 484 (770)
.++.+|||+|+|||||||+++.|+..++ +.++++|+||+ ++. ....|+++ |.+.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999999999999999998774 56899999997 321 12237888 999999999999
Q ss_pred HHHHhcCCCcccccccccc-----CccCCc--ccee-eccCccEEEEEccccch----hhhhhcCCeEEEEEcChhHHHH
Q 004177 485 ISDIRNGRRTKVPIFDLET-----GARSGF--KELE-VSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 552 (770)
Q Consensus 485 L~~L~~g~~v~~P~yD~s~-----g~r~~~--~~~~-~~~~~~VVIvEG~~~l~----~~l~~~lD~~I~Vd~~~d~rL~ 552 (770)
|..|++++....|.|+++. +.+.+. ..|+ +.++.++||+||++.+. ..++.++|++|||+++.++++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 9999999999999997432 333321 1232 33578999999999874 5689999999999999999999
Q ss_pred HHHHhcccccCcCcch--hhHHhhccchhhhccccccCcccEEEcC
Q 004177 553 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 596 (770)
Q Consensus 553 Rri~RD~~~rG~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n 596 (770)
||++||..+||++.+. .++... .|.|.+||.|+.++||+++.-
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrr-mPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRR-MPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHh-CChHhhhCCCCcccCcEEEEe
Confidence 9999999999999986 677776 499999999999999997653
No 19
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.91 E-value=1.8e-24 Score=223.72 Aligned_cols=172 Identities=18% Similarity=0.242 Sum_probs=140.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceeccccc----ccc-CccccccccHHHHHHHHHHHhc-CCC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRN-GRR 493 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~----~~~-n~d~p~t~D~~ll~~~L~~L~~-g~~ 493 (770)
+|||+||||||||||++.|+..+. +.++++|+||.+... +.. .++.|+++|.+++.+.|..|+. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999883 458999999987432 112 3467899999999999999999 478
Q ss_pred ccccccccccCccCCccceeeccCccEEEEEccccchhh------hhhcCCeEEEEEcChhHH---HHHHHHhcccccCc
Q 004177 494 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE------IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC 564 (770)
Q Consensus 494 v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~------l~~~lD~~I~Vd~~~d~r---L~Rri~RD~~~rG~ 564 (770)
+.+|.||+..+++.+.. .....+.+|||+||+++++++ +++++|++|||+++.+.+ +.+|..|+..++|+
T Consensus 81 v~~P~yd~~~~~~~~~~-~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPGE-KQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCCC-ceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887542 233456799999999999854 899999999999999986 66666666667776
Q ss_pred Ccch------------------hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 565 FMSQ------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 565 ~l~~------------------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
.... .+|...+.|++.+||.|++..||++|..+.+
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~ 212 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGAD 212 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCC
Confidence 5541 1355678999999999999999999986644
No 20
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.90 E-value=1.2e-23 Score=215.42 Aligned_cols=175 Identities=31% Similarity=0.495 Sum_probs=151.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceecccc------ccccCccccccccHHHHHHHHHHHhcCC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 492 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~~~------~~~~n~d~p~t~D~~ll~~~L~~L~~g~ 492 (770)
..++.+|||+|+||||||||++.|+..++ +.++++|+||.... ....+++.|.++|++.+.+.|..|+.|+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 45799999999999999999999999983 56789999998642 2345678899999999999999999999
Q ss_pred CccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch--h
Q 004177 493 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 569 (770)
Q Consensus 493 ~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~--~ 569 (770)
.+..|.||++++.+... ... ..+.+++|+||+++++ +++.+.+|.+|||+++.++++.|++.||...+|.+.+. .
T Consensus 83 ~v~~p~~d~~~~~~~~~-~~~-~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~ 160 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKE-TIR-VEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN 160 (209)
T ss_pred ccccCcccccccccCCC-eEE-eCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence 99999999999987642 222 3557899999999997 78999999999999999999999999999888887664 4
Q ss_pred hHHhhccchhhhccccccCcccEEEcCCC
Q 004177 570 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 570 q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
.|...+.|.|..|++|.++.||++|+|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 161 QYLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 56666789999999999999999999864
No 21
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.90 E-value=5.1e-24 Score=215.86 Aligned_cols=126 Identities=29% Similarity=0.464 Sum_probs=112.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGV 87 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~ 87 (770)
.+|++|+|+|+++|.++|..|++|+++.+|.|||.++.+.+. .....+.+||||||+|+|+ +++++++|++|||+++.
T Consensus 59 ~~~~~p~a~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~~-~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~ 137 (194)
T PF00485_consen 59 YNFDHPDAFDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDPW-IIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADE 137 (194)
T ss_dssp SSTTSGGGBSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEEE-EEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-H
T ss_pred cCCCCccccCHHHHHHHHHHHhCCCcccccccccccccceee-eeecCCCCEEEEcccceeeeeeecccceeEEEecccH
Confidence 578899999999999999999999999999999999999874 4456788999999999999 78999999999999999
Q ss_pred hhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeCCC
Q 004177 88 HFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 88 d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
++++.||+.||+.+| +++++++++| +|+|.+||+|++++||+||++.-
T Consensus 138 ~~~l~Rri~RD~~~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 138 DLRLERRIQRDVAERGRSPEEVIAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHHHHHHS-S-HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHHHHHHhhhhccccCCcceeEEEEeecCChhhhhheeccccccEEEECCCC
Confidence 999999999999999 9999999987 79999999999999999999863
No 22
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.90 E-value=2.4e-23 Score=206.79 Aligned_cols=136 Identities=24% Similarity=0.293 Sum_probs=123.0
Q ss_pred cccccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeC--CEEEEEecceeecCCCcccCceeEEEEeh----hHHH
Q 004177 157 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG 230 (770)
Q Consensus 157 ~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~--~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~~ 230 (770)
+|+.+.....|+|+|||+|+++|+.++.+| |||..+ +++.+|||||...+.. |.+.|+|+.| +|.+
T Consensus 21 l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~~~---~~~~E~e~~v~~~~~~~~ 92 (169)
T cd07890 21 LGGAEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDGGP---KVREEIETEVADPEAMKE 92 (169)
T ss_pred cccccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCCCc---cceEEEEEecCCHHHHHH
Confidence 345566789999999999999999998888 999988 8999999998765433 8999999999 8999
Q ss_pred HHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec------ChhHHHHHHHHcCCCC-CcccchHHHH
Q 004177 231 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGING-PWITKSYLEM 301 (770)
Q Consensus 231 iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~------~~~~i~~~a~~Lgl~~-~~~~~sYleL 301 (770)
+|.+|||.+.++++|.|.+|.+++++|+||+|+|||. |+|||++ ..+.+..+++.||+.+ ..+++||++|
T Consensus 93 iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 93 ILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 9999999999999999999999999999999999999 9999999 4588999999999976 5599999975
No 23
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=5.2e-23 Score=220.07 Aligned_cols=179 Identities=19% Similarity=0.207 Sum_probs=142.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceecccccc-----ccCccccccccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQVK-----DFKYDDFSSLDLSLLSKNISDIR 489 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~~-----~~n~d~p~t~D~~ll~~~L~~L~ 489 (770)
.+.|++|||+||+||||||+++.|...+. +.++++|+||.+.... ..+++.|.++|.+++.+.+..|+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 46799999999999999999999988774 4578999999874321 12457899999999999999999
Q ss_pred cCCC-ccccccccccCccCCccceeeccCccEEEEEccccch-hh----------hhhcCCeEEEEEcChhHHHHHHHHh
Q 004177 490 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 490 ~g~~-v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~----------l~~~lD~~I~Vd~~~d~rL~Rri~R 557 (770)
.|+. +.+|.||+.++++.+.. .....+.+|||+||++++. ++ +++++|++|||++|.+.+..|+++|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~-~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDG-FKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCCC-eEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 9986 99999999999988643 3344678999999999985 33 4699999999999999999998888
Q ss_pred cccc--cC-------------cCcch------hhHHhhccchhhhccccccCcccEEEcCCCCCC
Q 004177 558 DKSR--MG-------------CFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 601 (770)
Q Consensus 558 D~~~--rG-------------~~l~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~ 601 (770)
...- ++ -+.+. ..|.....|++.+||.|++.+||+|+..+-+..
T Consensus 218 ~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~ 282 (290)
T TIGR00554 218 FLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHA 282 (290)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCc
Confidence 6322 22 11111 123445789999999999999999998776543
No 24
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=2.1e-22 Score=219.22 Aligned_cols=209 Identities=22% Similarity=0.305 Sum_probs=163.1
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceeccc-c-cccc--CccccccccHHHHHHHHHHHhcCCC
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE-Q-VKDF--KYDDFSSLDLSLLSKNISDIRNGRR 493 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~~-~-~~~~--n~d~p~t~D~~ll~~~L~~L~~g~~ 493 (770)
+.+++++|||+|+||||||||++.|++.++ +.++++|+|+... . .... ..-+|.+.|++++.+.+..|+.|+.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 356899999999999999999999999987 5688999997531 1 1112 2235788999999999999999999
Q ss_pred ccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-hhH
Q 004177 494 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI 571 (770)
Q Consensus 494 v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~-~q~ 571 (770)
+..|.||+.++...+. ....+.++||+||+++++ ..+++.+|++|||+++.++++.|+++|+..++|.+.+. .+.
T Consensus 84 I~~P~yd~~~g~~~~~---~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 84 ILKPIYNHETGTFDPP---EYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred eecceeecCCCCcCCc---EecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 9999999999876532 223467899999999765 66789999999999999999999999999999987664 455
Q ss_pred HhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhh-hccccccceeeecCCC
Q 004177 572 MMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKF-CSSAQNFIDMYLRLPG 647 (770)
Q Consensus 572 ~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v-~~fv~~y~~~Yl~~~~ 647 (770)
+....|.+.+||+|.+..||+||++...- +...+. ..+.|+-.-+ ++-+..|-+.|++.++
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~p~~-~~~~~~--------------~~~~l~v~li~~~~~~~~~~~~~~d~~ 222 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFLPTQ-LIDNDE--------------ENKVLRVRLVLRPGIPHPDPAYLFDEG 222 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcCCCc-CCCCCC--------------CCcEEEEEEEecCCCCCCCcceeeccc
Confidence 66789999999999999999999875432 221110 0112222222 3447788899988887
No 25
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.87 E-value=6e-22 Score=202.76 Aligned_cols=175 Identities=32% Similarity=0.522 Sum_probs=149.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceecccc------ccccCccccccccHHHHHHHHHHHhcCC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 492 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~~~------~~~~n~d~p~t~D~~ll~~~L~~L~~g~ 492 (770)
.++..+|||+||||||||||++.|+..++ +.++++|+|+.... ....+++.|.++|.+++.+.|..|..|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999999885 56899999987532 2345677899999999999999999999
Q ss_pred CccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch--h
Q 004177 493 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 569 (770)
Q Consensus 493 ~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~--~ 569 (770)
.+..|.||+.++++.. .... ..+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.|+...+|+..+. .
T Consensus 83 ~v~~p~yd~~~~~~~~-~~~~-~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK-ETVH-IEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CEecccceeecCCCCC-ceEE-eCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999999887743 2233 3567999999999976 66888999999999999999999999999888887663 4
Q ss_pred hHHhhccchhhhccccccCcccEEEcCCC
Q 004177 570 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 570 q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
+|....+|.|..|++|.+..||+||+++-
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 66667889999999999999999998754
No 26
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.87 E-value=6.2e-22 Score=200.87 Aligned_cols=172 Identities=34% Similarity=0.517 Sum_probs=146.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCccccccceecccc------ccccCccccccccHHHHHHHHHHHhcCCCcccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 497 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L---~~~vis~Ddfy~~~~------~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P 497 (770)
+|||+||+|||||||+++|+..+ ++.++++|+||.... .....++.|.++|++++.+.|..++.++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 367999999997532 123356778899999999999999999999999
Q ss_pred ccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch--hhHHhh
Q 004177 498 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT 574 (770)
Q Consensus 498 ~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~--~q~~~~ 574 (770)
.||++++.+... .. ...+.+++|+||++++. +.+.+.+|..|||+++.+.++.|++.||..+||.+.+. ..+...
T Consensus 81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 999999987632 22 34567899999999987 67889999999999999999999999999888877654 455567
Q ss_pred ccchhhhccccccCcccEEEcCCCCC
Q 004177 575 VFPMFQQHIEPHLVHAHLKIRNDFDP 600 (770)
Q Consensus 575 v~p~~~~~I~p~~~~ADivI~n~~~~ 600 (770)
..+.+..|++|.++.||++|+|+-+.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCc
Confidence 88999999999999999999986544
No 27
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.87 E-value=3.1e-22 Score=209.43 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=112.0
Q ss_pred CCCCC--cccccHHHHHHHHHHHhCCCCcccccccc----------ccCcccCCeEEEcCCCcEEEEEecccch----HH
Q 004177 9 DEGND--LDSIDFDALVQNLQDLTEGKDTLIPMFDY----------QQKNRIGSKVIKGASSGVVIVDGTYALD----AR 72 (770)
Q Consensus 9 ~d~d~--Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~----------~~~~r~~~~~~~~~~~~VVIVEGi~~l~----~~ 72 (770)
.+||| |+|+|+++|.++|++|++|++++.|.||| ..+.+.+++ ....+++|||+||+|.++ ++
T Consensus 58 ~nfdHf~PeAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~ 136 (277)
T cd02029 58 RNFSHFGPEANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYN 136 (277)
T ss_pred CCCCCCCcccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHH
Confidence 37888 99999999999999999999999999988 345555543 346899999999999554 79
Q ss_pred hhhcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 73 LRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 73 l~~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
+++++|+|||||++.++++.||+.||+.+| +|.|+|++++ .|+|..||.|++.+|||+++.
T Consensus 137 lr~~~DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 137 VAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HHHhCCeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEec
Confidence 999999999999999999999999999999 9999999987 599999999999999999976
No 28
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.87 E-value=9.9e-22 Score=209.46 Aligned_cols=169 Identities=21% Similarity=0.362 Sum_probs=141.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---Cccccccceecccc--c--cccCccccccccHHHHHHHHHHHhcCCCcccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ--V--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 499 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~~~--~--~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y 499 (770)
+|||+|+||||||||++.|++.++ ..++++|+|++... . .....-+|.+.+++++.+.+..|+.|+.+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999884 56899999986421 1 1123345778889999999999999999999999
Q ss_pred ccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-hhHHhhccc
Q 004177 500 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 577 (770)
Q Consensus 500 D~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~-~q~~~~v~p 577 (770)
++.++...+. ....+.++||+||+++++ +.+++.+|++|||+++.+.++.|+++|+..++|.+.+. .+.+..+.|
T Consensus 81 ~~~~~~~~~~---~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~ 157 (273)
T cd02026 81 NHVTGLIDPP---ELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP 157 (273)
T ss_pred cccCCCcCCc---EEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence 9999865432 223557999999999875 58999999999999999999999999999999987764 345556799
Q ss_pred hhhhccccccCcccEEEcCCC
Q 004177 578 MFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 578 ~~~~~I~p~~~~ADivI~n~~ 598 (770)
.+.+||+|.+.+||+||+...
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~p 178 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVLP 178 (273)
T ss_pred hHHHHhccccccCcEEEEccC
Confidence 999999999999999997543
No 29
>PRK06696 uridine kinase; Validated
Probab=99.84 E-value=1.3e-20 Score=195.18 Aligned_cols=177 Identities=20% Similarity=0.257 Sum_probs=138.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--cccccceeccccc-cccCcccc-----ccccHHHHHHHHHHHh
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDIR 489 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L---~~~--vis~Ddfy~~~~~-~~~n~d~p-----~t~D~~ll~~~L~~L~ 489 (770)
..++|++|||+|++||||||||+.|++.| |.. ++|+|+||.+... ...++.++ +++|.++|.+.+..+.
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45689999999999999999999999998 433 5679999998543 22233333 6899999999887743
Q ss_pred -cCC--CccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 490 -NGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 490 -~g~--~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
.+. .+..|.||+..+.+... ......+.++||+||++++.+++...+|.+|||+++.++++.|++.||...+|...
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~ 176 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE 176 (223)
T ss_pred cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence 433 46778899988765422 22223457899999999998999999999999999999999999999988888633
Q ss_pred ch-hhHHhhccchhhhccccc--cCcccEEEcCCC
Q 004177 567 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDF 598 (770)
Q Consensus 567 ~~-~q~~~~v~p~~~~~I~p~--~~~ADivI~n~~ 598 (770)
+. ..+...+.+++..|+.+. +++||++|+|+-
T Consensus 177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 32 567777888988887655 788999998865
No 30
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.83 E-value=1.1e-20 Score=189.49 Aligned_cols=132 Identities=39% Similarity=0.551 Sum_probs=117.1
Q ss_pred CCcccCC-------CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHh
Q 004177 1 MENYRVG-------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL 73 (770)
Q Consensus 1 md~y~~~-------~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l 73 (770)
||+|+.. ..++++|.++|+++|.++|..|++|+.+.+|.|||.++.+.+.....+++.+||||||+|++++++
T Consensus 35 ~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l 114 (179)
T cd02028 35 LDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNERL 114 (179)
T ss_pred hhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCHhH
Confidence 4677762 246788999999999999999999999999999999999987556678899999999999999999
Q ss_pred hhcCCeEEEEecCchh-HHHHHhhhccccC-CCHHHHHHHH--HHhhh-ccccccCCcccEEEe
Q 004177 74 RSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDSI--FPLFR-KHIEPDLHHAQIRIN 132 (770)
Q Consensus 74 ~~l~DlkIfVd~d~d~-rl~RRi~RD~~er-~s~e~v~~~v--~p~~~-~yI~P~k~~ADiVI~ 132 (770)
++++|++|||++|.++ |+.||+.||+.+| ++.++++++| .|.++ .|+.|+++.||+|++
T Consensus 115 ~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 115 RSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred HhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccCchhhcCCCchhccceecc
Confidence 9999999999999998 9999999999999 9999999986 45555 555779999999985
No 31
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.83 E-value=2.5e-20 Score=187.83 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=122.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-CCccccccceeccccc------cccCccccccccHHHHHHHHHHHhcCCCcccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 499 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy~~~~~------~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y 499 (770)
+|||+|++||||||+|+.|++.+ ++.++++|+||++.+. +..+|+.|.++|++++.+.|..|+.|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 6889999999998532 3358999999999999999999999987666666
Q ss_pred ccccCccCCc------------cceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcC-
Q 004177 500 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF- 565 (770)
Q Consensus 500 D~s~g~r~~~------------~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~- 565 (770)
+......... .......+.++||+||.++++ +++++++|++||++++.++++.|++.|+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 5554322110 112234567899999999987 78999999999999999999999999985442111
Q ss_pred -cch-hhHHhhccchhhhc
Q 004177 566 -MSQ-NDIMMTVFPMFQQH 582 (770)
Q Consensus 566 -l~~-~q~~~~v~p~~~~~ 582 (770)
... ..+...|||+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 111 34556789998875
No 32
>PRK15453 phosphoribulokinase; Provisional
Probab=99.81 E-value=7.7e-20 Score=192.93 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=108.8
Q ss_pred CCCC--cccccHHHHHHHHHHHhCCCCccccccccc-----cCcccCCe----EEEcCCCcEEEEEecccch----HHhh
Q 004177 10 EGND--LDSIDFDALVQNLQDLTEGKDTLIPMFDYQ-----QKNRIGSK----VIKGASSGVVIVDGTYALD----ARLR 74 (770)
Q Consensus 10 d~d~--Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~-----~~~r~~~~----~~~~~~~~VVIVEGi~~l~----~~l~ 74 (770)
+|+| |+|+|+++|.++|++|++|+.+..|.|+|. .+.+.+.+ ....++++|||+||+|.++ ..++
T Consensus 65 nfdhf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr 144 (290)
T PRK15453 65 HFSHFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVA 144 (290)
T ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHH
Confidence 7888 999999999999999999999999999753 24433221 1234689999999999985 6899
Q ss_pred hcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 75 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 75 ~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
+++|++|||+++.++++.||+.||+.+| +|.|+|++++ .|+|..||.|++.+|||+++.
T Consensus 145 ~~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 145 QHVDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HhCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEEe
Confidence 9999999999999999999999999999 9999999987 699999999999999998765
No 33
>PLN02348 phosphoribulokinase
Probab=99.81 E-value=6.5e-20 Score=201.38 Aligned_cols=131 Identities=22% Similarity=0.312 Sum_probs=117.7
Q ss_pred CCcccCC--------CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-H
Q 004177 1 MENYRVG--------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-A 71 (770)
Q Consensus 1 md~y~~~--------~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~ 71 (770)
||+|+.. -.+..||+++|+++|.++|..|++|+++.+|.|||.++.+.+.. .+++++||||||+|+|+ +
T Consensus 100 lDDYh~~dr~~r~~~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e--~I~p~~VVIVEGlh~L~~e 177 (395)
T PLN02348 100 LDDYHSLDRTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--LIEPPKILVIEGLHPMYDE 177 (395)
T ss_pred cccccCCChhhHhhcCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcE--EcCCCcEEEEechhhccCc
Confidence 6888742 12346899999999999999999999999999999999877653 47789999999999999 6
Q ss_pred HhhhcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 72 RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 72 ~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
.+++++|++||||++.++++.||++||+.+| ++.+++++++ +|.|.+||+|++++||+||+-
T Consensus 178 ~lr~l~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 178 RVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred cccccCcEEEEEECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe
Confidence 8999999999999999999999999999998 8999999876 699999999999999999953
No 34
>PRK07667 uridine kinase; Provisional
Probab=99.80 E-value=2.2e-19 Score=182.19 Aligned_cols=172 Identities=17% Similarity=0.306 Sum_probs=131.1
Q ss_pred HHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecccccc-ccCccc-----cccccHHHHHHH
Q 004177 416 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSKN 484 (770)
Q Consensus 416 ~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~~-~~n~d~-----p~t~D~~ll~~~ 484 (770)
+.+.+..+.+++|||+|++||||||+++.|++.++ +.++++|+||...... ..+... ...+|++.+.+.
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~ 87 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK 87 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence 34445566779999999999999999999999873 5699999999875321 111111 135788888764
Q ss_pred -HHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccC
Q 004177 485 -ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 563 (770)
Q Consensus 485 -L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG 563 (770)
+..|+.++.+.+|.||+.++.+.. .... ..+.+++|+||++++.+.+.+.+|.+|+|+++.+.++.|++.|+...
T Consensus 88 v~~~L~~~~~i~~P~~d~~~~~~~~-~~~~-~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~~~-- 163 (193)
T PRK07667 88 FFRKLQNETKLTLPFYHDETDTCEM-KKVQ-IPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQKN-- 163 (193)
T ss_pred HHHhhcCCCeEEEeeeccccccccc-ccee-cCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccHhH--
Confidence 688999999999999999976543 1222 34579999999999888899999999999999999999999876221
Q ss_pred cCcchhhHHhhccchhhhcccc--ccCcccEEEc
Q 004177 564 CFMSQNDIMMTVFPMFQQHIEP--HLVHAHLKIR 595 (770)
Q Consensus 564 ~~l~~~q~~~~v~p~~~~~I~p--~~~~ADivI~ 595 (770)
..++...+.+.+..|+.. .+..||++++
T Consensus 164 ----~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 164 ----LSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred ----HHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 235666666888888753 2778999874
No 35
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.79 E-value=2.1e-19 Score=186.02 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=112.7
Q ss_pred CCcccCC---------CCCCCCcccccHHHHHHHHHHHhCC-CCccccccccccCcccCCeEEEcCCCcEEEEEecccch
Q 004177 1 MENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEG-KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 70 (770)
Q Consensus 1 md~y~~~---------~~d~d~Pda~D~~~l~~~L~~Lk~g-~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~ 70 (770)
||+|+.+ ....++|+++|+++|.++|..|++| +.+.+|.|||.++++.+.....+++.+||||||+|+|+
T Consensus 37 ~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~ 116 (220)
T cd02025 37 TDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQ 116 (220)
T ss_pred cCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcC
Confidence 6888764 1246689999999999999999995 78999999999999886655557889999999999999
Q ss_pred -HH-----hhhcCCeEEEEecCchhH---HHHHhhhccccC-CCHHHHHHH----------------H----HHhhhccc
Q 004177 71 -AR-----LRSLLDIRVAVVGGVHFS---LISKVQYDIGDS-CSLDSLIDS----------------I----FPLFRKHI 120 (770)
Q Consensus 71 -~~-----l~~l~DlkIfVd~d~d~r---l~RRi~RD~~er-~s~e~v~~~----------------v----~p~~~~yI 120 (770)
++ +++++|++|||++|.+++ +.||..||+.+| ++++.++.+ | +|++.+||
T Consensus 117 ~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (220)
T cd02025 117 TGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENI 196 (220)
T ss_pred CcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhc
Confidence 44 999999999999999996 566666666666 666654432 3 79999999
Q ss_pred cccCCcccEEEeCCCC
Q 004177 121 EPDLHHAQIRINNRFV 136 (770)
Q Consensus 121 ~P~k~~ADiVI~~~~~ 136 (770)
.|++.+||+||+.+-+
T Consensus 197 ~p~~~~AD~ii~~~~~ 212 (220)
T cd02025 197 LPTRNRADLILEKGAD 212 (220)
T ss_pred cCCccceEEEEEeCCC
Confidence 9999999999987644
No 36
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.78 E-value=1.8e-18 Score=179.99 Aligned_cols=181 Identities=20% Similarity=0.231 Sum_probs=139.8
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC-----cc-ccccceeccccc----cc-cCccccccccHHHHHH
Q 004177 415 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC-----EV-VSLESYFKSEQV----KD-FKYDDFSSLDLSLLSK 483 (770)
Q Consensus 415 i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~-----~v-is~Ddfy~~~~~----~~-~n~d~p~t~D~~ll~~ 483 (770)
+..+....+++.+|||+||+|||||||++.|+..++. .+ +++|+|+.+... +. ..++.|.++|.+.+.+
T Consensus 23 ~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~ 102 (229)
T PRK09270 23 LAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA 102 (229)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH
Confidence 3344445678999999999999999999999998852 34 899999987431 11 1245788999999999
Q ss_pred HHHHHhcCC-CccccccccccCccCCccceeeccCccEEEEEccccch-----hhhhhcCCeEEEEEcChhHHHHHHHHh
Q 004177 484 NISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 484 ~L~~L~~g~-~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-----~~l~~~lD~~I~Vd~~~d~rL~Rri~R 557 (770)
.+..|+.|+ .+..|.||+..+..... ........+++|+||.+++. +.+.+.+|..||++++.+.++.|.+.|
T Consensus 103 ~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 103 LLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred HHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHH
Confidence 999999987 89999999988765532 22333356899999999975 367789999999999999999999999
Q ss_pred cccccCcCcch-hhHH-hhccchhhhccccccCcccEEEcCCC
Q 004177 558 DKSRMGCFMSQ-NDIM-MTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 558 D~~~rG~~l~~-~q~~-~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
+. ++|.+.+. .+.+ ....|.+ .||.|.++.||+||.|+-
T Consensus 182 ~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 182 KL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 63 45665443 2233 3456666 689999999999999864
No 37
>PRK05439 pantothenate kinase; Provisional
Probab=99.77 E-value=1e-18 Score=188.30 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=114.5
Q ss_pred CCcccCC---------CCCCCCcccccHHHHHHHHHHHhCCCC-ccccccccccCcccCCeEEEcCCCcEEEEEecccch
Q 004177 1 MENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 70 (770)
Q Consensus 1 md~y~~~---------~~d~d~Pda~D~~~l~~~L~~Lk~g~~-i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~ 70 (770)
||+|+.+ ...+++|+|+|+++|.++|.+|++|++ +.+|.|||.++++.+.....+.+.+||||||+++|+
T Consensus 124 ~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~ 203 (311)
T PRK05439 124 TDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQ 203 (311)
T ss_pred ccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhcc
Confidence 6888764 235779999999999999999999987 999999999999986556678899999999999997
Q ss_pred -HHh------hhcCCeEEEEecCchhHHHHHhhhccccC----------------CCHHHHHH----HH----HHhhhcc
Q 004177 71 -ARL------RSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID----SI----FPLFRKH 119 (770)
Q Consensus 71 -~~l------~~l~DlkIfVd~d~d~rl~RRi~RD~~er----------------~s~e~v~~----~v----~p~~~~y 119 (770)
++. +++||++||||+|.+.+..|++.|++..| .+.+++.+ +| +||+..|
T Consensus 204 ~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~ 283 (311)
T PRK05439 204 TGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEEN 283 (311)
T ss_pred CcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHh
Confidence 554 99999999999999999999888887532 33444443 23 6999999
Q ss_pred ccccCCcccEEEeCCCC
Q 004177 120 IEPDLHHAQIRINNRFV 136 (770)
Q Consensus 120 I~P~k~~ADiVI~~~~~ 136 (770)
|.|++.+||+||+.+-+
T Consensus 284 I~Ptk~~ADlIi~~~~~ 300 (311)
T PRK05439 284 ILPTRERADLILHKGAD 300 (311)
T ss_pred ccCCCcCCCEEEeCCCC
Confidence 99999999999987644
No 38
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.74 E-value=3.8e-18 Score=182.76 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=112.9
Q ss_pred CCcccCC---------CCCCCCcccccHHHHHHHHHHHhCCCC-ccccccccccCcccCCeEEEcCCCcEEEEEecccch
Q 004177 1 MENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 70 (770)
Q Consensus 1 md~y~~~---------~~d~d~Pda~D~~~l~~~L~~Lk~g~~-i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~ 70 (770)
||+|+.. ..++++|+++|++.+.++|..|++|++ +.+|.|||.++++.+.....+.+.+||||||+|+|+
T Consensus 100 ~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~ 179 (290)
T TIGR00554 100 TDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQ 179 (290)
T ss_pred cccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhC
Confidence 5666653 346789999999999999999999986 999999999999987655667899999999999998
Q ss_pred -HH----------hhhcCCeEEEEecCchhHHHHHhhhccccC----------------CCHHHHHH----HH----HHh
Q 004177 71 -AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID----SI----FPL 115 (770)
Q Consensus 71 -~~----------l~~l~DlkIfVd~d~d~rl~RRi~RD~~er----------------~s~e~v~~----~v----~p~ 115 (770)
++ ++++||++||||+|.++++.|++.|+..-| .+.++.++ .| .|+
T Consensus 180 ~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~n 259 (290)
T TIGR00554 180 SGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLN 259 (290)
T ss_pred CchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhh
Confidence 55 579999999999999999999999865331 23333333 23 799
Q ss_pred hhccccccCCcccEEEeCCCC
Q 004177 116 FRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 116 ~~~yI~P~k~~ADiVI~~~~~ 136 (770)
+.+||+|++.+||+||+.+-+
T Consensus 260 l~~~I~Ptr~rAdlIl~~~~~ 280 (290)
T TIGR00554 260 LKQNILPTRERASLILTKGAN 280 (290)
T ss_pred HHhhCCCCcccccEEEecCCC
Confidence 999999999999999987654
No 39
>PRK06547 hypothetical protein; Provisional
Probab=99.73 E-value=4.6e-17 Score=162.33 Aligned_cols=153 Identities=21% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
.+.+.+|+|+|++||||||+++.|++.++..++++|+||.+.. +. ..+...+.+.+.. .|+....| ||+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-------~~-~~~~~~l~~~~l~--~g~~~~~~-yd~ 80 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-------GL-AAASEHVAEAVLD--EGRPGRWR-WDW 80 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-------cC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence 5689999999999999999999999999999999999997431 10 1133445555544 67777778 999
Q ss_pred ccCccCCccceeeccCccEEEEEccccchhhhhhcCC-----eEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhcc
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF 576 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD-----~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~ 576 (770)
..+.+.. +....+.++||+||.+++.+++++.+| ++||+++|.++++.|++.||.. ...++..+.
T Consensus 81 ~~~~~~~---~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~ 150 (172)
T PRK06547 81 ANNRPGD---WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA 150 (172)
T ss_pred CCCCCCC---cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence 9776542 223345689999999999988999999 9999999999999999999954 134566677
Q ss_pred chhhhcccc--ccCcccEEEc
Q 004177 577 PMFQQHIEP--HLVHAHLKIR 595 (770)
Q Consensus 577 p~~~~~I~p--~~~~ADivI~ 595 (770)
+.++.|++. .+.+||+++.
T Consensus 151 ~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 151 AQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHhcCCChhccEEEec
Confidence 888888854 3788998764
No 40
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.68 E-value=1.7e-16 Score=162.59 Aligned_cols=126 Identities=31% Similarity=0.523 Sum_probs=115.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGV 87 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~ 87 (770)
.++++|+++|++.+.++|..|++|+.+..|.||+.++.+... .+...+.++|||||.+++. +.+++++|++|||++|.
T Consensus 58 ~~~~~~~~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~ 136 (209)
T PRK05480 58 TNYDHPDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPL 136 (209)
T ss_pred cCccCcccccHHHHHHHHHHHHcCCccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCCh
Confidence 467799999999999999999999999999999999988754 4557788999999999998 79999999999999999
Q ss_pred hhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCC
Q 004177 88 HFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 88 d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
++++.|++.||...| ++.++++++| .|+|..|++|.+++||+||+++.
T Consensus 137 ~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 137 DIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred hHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 999999999999888 8899988865 69999999999999999998865
No 41
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.68 E-value=1.8e-16 Score=165.34 Aligned_cols=190 Identities=16% Similarity=0.220 Sum_probs=144.3
Q ss_pred cccceeecccCCCCCCCccccCCccccceeeecCCCCcccchhhHHHH---HHHHHH--------------H--HcCCCC
Q 004177 365 VLATWHFISSDPSHAGSSVIGSSSFRDTVKLVPMPDSYDFDRGLLLSV---QAIQAL--------------L--ENKGLP 425 (770)
Q Consensus 365 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~---~~i~~l--------------~--~~~~~p 425 (770)
.-.+|+.++.+.+..+++ ..-.++.++.+..+..|.--... ..++.+ . .+...|
T Consensus 10 ~~~~w~~~~~~~~~~lt~-------~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~p 82 (283)
T COG1072 10 SREQWAALRASTPLTLTE-------EELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRP 82 (283)
T ss_pred chhhhhhhhhcCccccCH-------HHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 457899889999888887 33444566677776665422111 111111 1 235689
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceecccc----ccccCc-cccccccHHHHHHHHHHHhcCCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDFKY-DDFSSLDLSLLSKNISDIRNGRR 493 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~----~~~~n~-d~p~t~D~~ll~~~L~~L~~g~~ 493 (770)
++|||+|+.|+||||+|+.|+..+. +.++.||.|+.+.. .+-+++ +-|.++|...+.+.+..++.|+.
T Consensus 83 fIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~ 162 (283)
T COG1072 83 FIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKP 162 (283)
T ss_pred EEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999883 55889999988743 222333 67999999999999999998876
Q ss_pred -ccccccccccCccCCccceeeccCccEEEEEccccchh-----hhhhcCCeEEEEEcChhHHHHHHHHhccccc
Q 004177 494 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 562 (770)
Q Consensus 494 -v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~-----~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r 562 (770)
+..|+||+...+..+. ...+....++||+||++++.+ .+.+.+|+.||||++.+.--.|.+.|-...+
T Consensus 163 ~v~aPvysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 163 DVFAPVYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFG 236 (283)
T ss_pred ccccccccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcc
Confidence 9999999999998864 445556789999999999862 4678899999999999988888888865543
No 42
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.67 E-value=2.6e-16 Score=157.84 Aligned_cols=141 Identities=22% Similarity=0.294 Sum_probs=112.5
Q ss_pred ccccccccccceeeeeccCCCCCCcchhhhccCCeeeeEEe-CCEEEEEecceeecCCC----cccCceeEEEEeh----
Q 004177 156 CSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDKN----FIIRPKAEFEVGR---- 226 (770)
Q Consensus 156 ~~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~-~~~~~LTyKgp~~~~~~----~~ik~r~E~ev~v---- 226 (770)
..++.+.....|+|+|||+|++++..++.++ |||.. +++..+|||+|...+.. +.+. |.|+|..+
T Consensus 24 ~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~l-----RiR~~~~~~~~lTlK~~~~~~~~~e~~~~~~-r~e~e~~i~~~~ 97 (185)
T PF01928_consen 24 SLGAEFPKEEHQTDTYFDTPDRDLRKAGIAL-----RIRRENGDGWYLTLKGPGSDGPREEIEFEVS-REEYEAPISDAE 97 (185)
T ss_dssp HCTEEEEEEEEEEEEEEEETTTHHHHTTSEE-----EEEEETTTEEEEEEEEESSSSSEEEEEEEES-HHCCEEEHSHHH
T ss_pred hhccccCeEEEEEEEEEeCCChhHHhCCcEE-----EEEeecCCccEEEEEccCccCcccccceeec-chhhhccccchH
Confidence 3556788889999999999999998887666 99986 77878999988765431 1111 44444444
Q ss_pred hHHHHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCC-CCCeEEEEec--ChhH-------HHHHHHHcCCCC-Cccc
Q 004177 227 MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGT--NRKT-------VGAEALRMGING-PWIT 295 (770)
Q Consensus 227 ~~~~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~l-G~~FvEIE~~--~~~~-------i~~~a~~Lgl~~-~~~~ 295 (770)
.+.++|..|||.+.++++|.|+.|.+++++|++|+++++ |. |+|||.. +.+. +.+++..||+.. +.++
T Consensus 98 ~~~~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~ 176 (185)
T PF01928_consen 98 EMREILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIE 176 (185)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHH
T ss_pred HHHHHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHH
Confidence 689999999999999999999999999999999999999 77 9999998 3333 344556699966 4499
Q ss_pred chHHHHHH
Q 004177 296 KSYLEMVL 303 (770)
Q Consensus 296 ~sYleL~l 303 (770)
++|++|+.
T Consensus 177 r~y~~l~~ 184 (185)
T PF01928_consen 177 RSYLELLK 184 (185)
T ss_dssp SHHHHHCH
T ss_pred HHHHHhhc
Confidence 99999864
No 43
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=5.6e-17 Score=183.98 Aligned_cols=175 Identities=24% Similarity=0.429 Sum_probs=155.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC----------Cccccccceecc--------ccccccCccccccccHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS--------EQVKDFKYDDFSSLDLSLLSK 483 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~----------~~vis~Ddfy~~--------~~~~~~n~d~p~t~D~~ll~~ 483 (770)
...|++||+.|+++|||||++..+...++ +..+++|.||+. .+.+.+++++|+++|.+++..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 45799999999999999999999998887 236788889886 123468999999999999999
Q ss_pred HHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhccccc
Q 004177 484 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 562 (770)
Q Consensus 484 ~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r 562 (770)
.++.+..|..+.+|.|++.++.+... .+....+++++++||+++++ .+.+++++.++|++++.+.++.||+.||..++
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999754 34455778999999999998 67899999999999999999999999999999
Q ss_pred CcCcch--hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 563 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 563 G~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
|+.++. .||..++.|.|..||+|.++.||++|+..
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 999885 68888999999999999999999999754
No 44
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.66 E-value=4.1e-16 Score=158.65 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=105.5
Q ss_pred ccc--ccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceee---cCCCcccCceeEEEEeh---h-
Q 004177 157 SIS--AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGR---M- 227 (770)
Q Consensus 157 ~g~--~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~---~~~~~~ik~r~E~ev~v---~- 227 (770)
+|+ .+.....|+|+|||+|+++|+.+|++| |+|.. ..+|++|++.. +... +.++|+++.+ +
T Consensus 20 ~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~ 89 (196)
T cd07758 20 LGALLELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAA 89 (196)
T ss_pred ccCccCCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHH
Confidence 455 677888999999999999999999988 99963 77788886554 2333 8999999888 1
Q ss_pred --------------HHHHHHhcCcceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C---h-------hHH
Q 004177 228 --------------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTV 280 (770)
Q Consensus 228 --------------~~~iL~~LGf~~~~~~~K~R~~y~~~-~~~v~lD~v~~lG~~FvEIE~~--~---~-------~~i 280 (770)
|..+|..|||.+.++++|.|++|+++ +++|+||+++ +|..|+|||.+ + + +.+
T Consensus 90 v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i 168 (196)
T cd07758 90 LRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKI 168 (196)
T ss_pred HHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHH
Confidence 34799999999999999999999999 9999999999 88779999986 4 2 568
Q ss_pred HHHHHHcCCCCC
Q 004177 281 GAEALRMGINGP 292 (770)
Q Consensus 281 ~~~a~~Lgl~~~ 292 (770)
.++|++||+...
T Consensus 169 ~~~~~~lg~~~~ 180 (196)
T cd07758 169 DELISALMERYL 180 (196)
T ss_pred HHHHHHhCCCcc
Confidence 999999999863
No 45
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.66 E-value=4.4e-16 Score=156.43 Aligned_cols=119 Identities=14% Similarity=-0.008 Sum_probs=105.1
Q ss_pred cccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh----------------
Q 004177 163 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 226 (770)
Q Consensus 163 ~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---------------- 226 (770)
....|+|+|||+|+++|+.+++|| |||..|+++.+|||||.. +.|.|+|+.+
T Consensus 25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~ 92 (180)
T cd07762 25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE 92 (180)
T ss_pred CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence 447799999999999999999999 999999999999998773 4789999988
Q ss_pred -hHHHHHHhcCcce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C----hhHHHHHHHHcCCCCCc
Q 004177 227 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N----RKTVGAEALRMGINGPW 293 (770)
Q Consensus 227 -~~~~iL~~LGf~~-----~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~----~~~i~~~a~~Lgl~~~~ 293 (770)
.+..+|.+|||.+ ++.++|.|..|.++++.+|||++.++|..++|||.. + .+.+.++++.||++...
T Consensus 93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 3778999999986 999999999999999999999999999933999976 3 26789999999997643
No 46
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.64 E-value=1.1e-15 Score=156.45 Aligned_cols=127 Identities=29% Similarity=0.482 Sum_probs=114.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGV 87 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~ 87 (770)
..|++|+++|.+.+.++|..|+.|+.+.+|.||+.++++... ...+++.+++|+||+++++ +.+++.+|++|||+++.
T Consensus 58 ~~~~~~~~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~ 136 (207)
T TIGR00235 58 TNFDHPDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPL 136 (207)
T ss_pred CCCCCccHhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECCh
Confidence 356799999999999999999999999999999998888544 4567889999999999988 77999999999999999
Q ss_pred hhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC
Q 004177 88 HFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 88 d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
++++.|++.||...| ++.+.++++| +|+|..|+.|.+..||+||+++-+
T Consensus 137 ~~~l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~ 190 (207)
T TIGR00235 137 DIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGR 190 (207)
T ss_pred hHHHHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCCCC
Confidence 999999999999987 7888888876 689999999999999999987543
No 47
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.61 E-value=1.3e-15 Score=162.69 Aligned_cols=121 Identities=25% Similarity=0.342 Sum_probs=110.5
Q ss_pred CCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCchh
Q 004177 11 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHF 89 (770)
Q Consensus 11 ~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~ 89 (770)
..+|++.+++++.++|..|++|+.+..|.|||.++...+.. .+.+.++|||||+|+|+ +.+++++|++|||+++.++
T Consensus 51 ~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~ 128 (273)
T cd02026 51 ALDPRANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEV 128 (273)
T ss_pred cccccchhHHHHHHHHHHHHCCCCcccccccccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhH
Confidence 34799999999999999999999999999999998765432 46778999999999988 7999999999999999999
Q ss_pred HHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 90 SLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 90 rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
++.||+.||+..| ++.+++.+++ +|.+.+||.|++.+||+||..
T Consensus 129 r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~ADvVI~~ 176 (273)
T cd02026 129 KFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYADVVIQV 176 (273)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccCcEEEEc
Confidence 9999999999998 8999998876 799999999999999999964
No 48
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.61 E-value=2.9e-15 Score=152.01 Aligned_cols=127 Identities=31% Similarity=0.519 Sum_probs=114.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGV 87 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~ 87 (770)
.++++|+++|++.+.+.|..|+.|+.+..|.||+.++.+..... .+.+.+++|+||.+++. +.+.+++|++|||++|.
T Consensus 51 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~ 129 (198)
T cd02023 51 NNYDHPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDA 129 (198)
T ss_pred CCCCCCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECCh
Confidence 36789999999999999999999999999999999998875433 57788999999999998 78999999999999999
Q ss_pred hhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC
Q 004177 88 HFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 88 d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
++++.||+.||..+| ++.++++++| .++|..|++|+++.||+||+++-+
T Consensus 130 ~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 130 DVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCC
Confidence 999999999999888 7888887765 699999999999999999988654
No 49
>PRK07429 phosphoribulokinase; Provisional
Probab=99.57 E-value=6e-15 Score=161.05 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=109.6
Q ss_pred CCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCchhH
Q 004177 12 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFS 90 (770)
Q Consensus 12 d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~r 90 (770)
-+|++.|++++.++|..|++|+++..|.||+.++...+. ..+.+.++|||||+|+|+ +.+++++|++|||++|.+++
T Consensus 61 l~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr 138 (327)
T PRK07429 61 LDPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVK 138 (327)
T ss_pred cCccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHH
Confidence 379999999999999999999999999999999877654 346778999999999888 78899999999999999999
Q ss_pred HHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 91 LISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 91 l~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
+.||+.||+.+| ++.+++..++ +|.+.+||.|++..||+||++
T Consensus 139 ~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~ADiVI~~ 185 (327)
T PRK07429 139 IAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWADVVIQF 185 (327)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCCCEEEEc
Confidence 999999999988 8889888765 799999999999999999976
No 50
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.56 E-value=2.6e-15 Score=170.56 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=121.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecC
Q 004177 8 VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGG 86 (770)
Q Consensus 8 ~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d 86 (770)
..++++|++||++++...++++++|+++.+|.|||.++.+.+++...+.+.+++|+|||+++| ++++++++.++|+|++
T Consensus 104 ~~~f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~ 183 (473)
T KOG4203|consen 104 KYNFDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTD 183 (473)
T ss_pred cccccCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecC
Confidence 357889999999999999999999999999999999999987777789999999999999999 8999999999999999
Q ss_pred chhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC
Q 004177 87 VHFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 87 ~d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
.+.++.||+.||+.+| ++++.++.++ +|.|..||+|++++||++|+..-.
T Consensus 184 ~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~ 238 (473)
T KOG4203|consen 184 ADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGD 238 (473)
T ss_pred cchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecccc
Confidence 9999999999999999 9999999875 799999999999999999998753
No 51
>PRK08233 hypothetical protein; Provisional
Probab=99.47 E-value=3.7e-13 Score=133.90 Aligned_cols=150 Identities=17% Similarity=0.264 Sum_probs=108.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-Cccccccceecccc---cccc-C-ccccccccHHHHHHHHHHHhcCCCcccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQ---VKDF-K-YDDFSSLDLSLLSKNISDIRNGRRTKVP 497 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-~~vis~Ddfy~~~~---~~~~-n-~d~p~t~D~~ll~~~L~~L~~g~~v~~P 497 (770)
++++|+|+|++||||||+|+.|++.++ +.++++|+|+.... ...+ + .......+++.+.+.+..+..+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS----- 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC-----
Confidence 468999999999999999999999996 66788999976421 1110 0 11224556666766666544321
Q ss_pred ccccccCccCCccceeeccCccEEEEEccccc-hhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCc-Ccc--hhhHHh
Q 004177 498 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM 573 (770)
Q Consensus 498 ~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l-~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~-~l~--~~q~~~ 573 (770)
..++||+||.+.. .+++...+|+.||++++.++++.|++.|+...... ... ...|..
T Consensus 77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 1368899998775 47888899999999999999999999987543211 111 245666
Q ss_pred hccchhhhccccccCcccEEEcCC
Q 004177 574 TVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 574 ~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
.++|.|.+++++....|+++|+++
T Consensus 138 ~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 138 YARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHhhcCccCCeEEEcCC
Confidence 788999998888777899998754
No 52
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.43 E-value=1.5e-13 Score=138.72 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred CCcccCC----------CCCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccC-------------CeEEEcCC
Q 004177 1 MENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG-------------SKVIKGAS 57 (770)
Q Consensus 1 md~y~~~----------~~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~-------------~~~~~~~~ 57 (770)
||+|+.. ..+|++|+|+|+++|.++|..|++|+.+..|.+++....... ......++
T Consensus 31 ~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (187)
T cd02024 31 QDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAED 110 (187)
T ss_pred cccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCC
Confidence 5777763 358899999999999999999999998777777665543321 12345678
Q ss_pred CcEEEEEecccch-HHhhhcCCeEEEEecCchhHHHHHhhhccccC-----CCH-HHHHHHHHHhhhcc
Q 004177 58 SGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-----CSL-DSLIDSIFPLFRKH 119 (770)
Q Consensus 58 ~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er-----~s~-e~v~~~v~p~~~~y 119 (770)
.+||||||+++++ +++++++|++|||++|.++++.||+.||...- .++ ..+-+.|+|+|.++
T Consensus 111 ~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 111 LHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGFWPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred CcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcccCCCCcccccccchhHHHH
Confidence 8999999999999 89999999999999999999999999986541 233 33334468887653
No 53
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.40 E-value=1.1e-12 Score=131.19 Aligned_cols=129 Identities=17% Similarity=0.271 Sum_probs=112.5
Q ss_pred cceeeecCCCCCCCCCCCCCCeEEEEEeCceeeEEeeeeccccCeeeccccceEEe--hhhHHHHHhhhhhhhhheeeee
Q 004177 638 FIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEASA 715 (770)
Q Consensus 638 y~~~Yl~~~~~~~~~~~~~~~~i~~r~~~~r~~l~~~~~~~~~~~~~~p~~~f~~~--~~~~~gl~~lgy~~~~~~~~~~ 715 (770)
.-+.|+-.|+-.. ...+.|||+|+.+|++.|++..|..++.+.+++.++++|+ ..+...|.+|||+.++.++...
T Consensus 33 q~D~Yfd~p~~~l---~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~R 109 (174)
T TIGR00318 33 QHDIYFSNPCRDF---ASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKKR 109 (174)
T ss_pred eEEEeecCCCcch---hhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEEE
Confidence 4466655553221 2456799999999999999999999999999999999996 7778889999999999999999
Q ss_pred eEEecCeEEEEEeccccCCCceEEEecCCH---------HHHHHhhhhcccccccccchhhccC
Q 004177 716 FIYQDGKILIEVDHLQDAPSPYLQIKGVDK---------EAVAAAGSTLKLDGSYTTKVMSLAL 770 (770)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~v~~~~~~~~~~~~~~~~~~~~~~ 770 (770)
.+|..+++.|++|++++|| +|+.|.|... +.+.+.|.+|||.+..+++||+|++
T Consensus 110 ~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell 172 (174)
T TIGR00318 110 RIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELL 172 (174)
T ss_pred EEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHh
Confidence 9999999999999999997 7999999764 5789999999999999999999975
No 54
>PRK06696 uridine kinase; Validated
Probab=99.40 E-value=9.1e-13 Score=136.67 Aligned_cols=135 Identities=20% Similarity=0.221 Sum_probs=106.4
Q ss_pred CCcccCCC-----CCCCC-----cccccHHHHHHHHHHHh-CCC--CccccccccccCcccCCeEEEcCCCcEEEEEecc
Q 004177 1 MENYRVGV-----DEGND-----LDSIDFDALVQNLQDLT-EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTY 67 (770)
Q Consensus 1 md~y~~~~-----~d~d~-----Pda~D~~~l~~~L~~Lk-~g~--~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~ 67 (770)
||||+.+. .++++ +.++|+++|.++|.++. .++ .+..|.||+..+.+........++.++|||||.+
T Consensus 58 ~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~ 137 (223)
T PRK06696 58 IDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTF 137 (223)
T ss_pred cccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHH
Confidence 78888761 23334 47999999999999854 443 4788899999887764334556788899999999
Q ss_pred cchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHH----HHHHHhhhcccccc--CCcccEEEeCCC
Q 004177 68 ALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI----DSIFPLFRKHIEPD--LHHAQIRINNRF 135 (770)
Q Consensus 68 ~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~----~~v~p~~~~yI~P~--k~~ADiVI~~~~ 135 (770)
++.+.+++++|++|||++|.++++.|++.||...+.+.+++. .+|.|++..|+.+. +++||+||+|+-
T Consensus 138 l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 138 LLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 988999999999999999999999999999987773333333 45678888887655 799999998864
No 55
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.35 E-value=1.3e-12 Score=136.66 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCcccccHHHHHHHHHHHhCCCC-ccccccccccCcccCCeEEEcCCCcEEEEEecccch---H--HhhhcCCeEEEEec
Q 004177 12 NDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---A--RLRSLLDIRVAVVG 85 (770)
Q Consensus 12 d~Pda~D~~~l~~~L~~Lk~g~~-i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~---~--~l~~l~DlkIfVd~ 85 (770)
..|+|||..+|.+.|..+|+|++ |.+|+|||..+++.+.....++.++|||+||+++|+ + .+.++||++||||+
T Consensus 140 GfPeSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa 219 (283)
T COG1072 140 GFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDA 219 (283)
T ss_pred CCCccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecC
Confidence 49999999999999999998876 999999999999998878889999999999999999 2 67899999999999
Q ss_pred CchhHHHHHhhhccccC
Q 004177 86 GVHFSLISKVQYDIGDS 102 (770)
Q Consensus 86 d~d~rl~RRi~RD~~er 102 (770)
|.+....|.+.|....|
T Consensus 220 ~~~~le~wyi~Rfl~~g 236 (283)
T COG1072 220 DEELLEERYIERFLKFG 236 (283)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999999887
No 56
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.34 E-value=1.6e-12 Score=129.65 Aligned_cols=155 Identities=20% Similarity=0.288 Sum_probs=111.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCccccccceeccccc------cccCccccccccHHHHHHHHHHHhcCCC-cc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRR-TK 495 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy~~~~~------~~~n~d~p~t~D~~ll~~~L~~L~~g~~-v~ 495 (770)
+.+||||+|.+.|||||||+.|...+ ++.+||.||||++.+. +-.+|+.+.+.|++++.+.+.....+.. ..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 46899999999999999999999998 5889999999999542 1346788999999999998877655422 11
Q ss_pred ccc--------cccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 496 VPI--------FDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 496 ~P~--------yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
.+. +++-...- ........++|+||.+++. +.+...+|..+++..+.++...||-.| .++..
T Consensus 83 ~ar~~~v~~~~~~~~~~~~-----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~R----t~y~p 153 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF-----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREAR----TYYPP 153 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc-----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhccc----ccCCC
Confidence 111 11111110 0112346899999999985 888899999999999999988887655 34443
Q ss_pred chhhHHh-hccchhhhcccccc
Q 004177 567 SQNDIMM-TVFPMFQQHIEPHL 587 (770)
Q Consensus 567 ~~~q~~~-~v~p~~~~~I~p~~ 587 (770)
...-|.+ .+||.|.++.+..+
T Consensus 154 ~~tgyfd~~~~P~Y~~~~~~~~ 175 (225)
T KOG3308|consen 154 DDTGYFDPVVWPHYEKNFEEAR 175 (225)
T ss_pred CCCccccCccchHHHHHHHHHH
Confidence 3333444 48899888865543
No 57
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.33 E-value=7.2e-12 Score=130.47 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=106.7
Q ss_pred CCCCcccccHHHHHHHHHHHhCCC-CccccccccccCcccCCeEEEcCCCcEEEEEecccch-----HHhhhcCCeEEEE
Q 004177 10 EGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAV 83 (770)
Q Consensus 10 d~d~Pda~D~~~l~~~L~~Lk~g~-~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-----~~l~~l~DlkIfV 83 (770)
.++.|+++|++.+.+.|..|+.|+ .+.+|.||+..+.+........+..+|||+||.+++. +.+++++|+.|||
T Consensus 88 ~~~~~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v 167 (229)
T PRK09270 88 RKGAPETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFL 167 (229)
T ss_pred ccCCCCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEE
Confidence 456899999999999999999997 8999999999888765433333467899999999986 3788899999999
Q ss_pred ecCchhHHHHHhhhccccCCCHHHHHHHH----HHhhhccccccCCcccEEEeCCCCc
Q 004177 84 VGGVHFSLISKVQYDIGDSCSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFVS 137 (770)
Q Consensus 84 d~d~d~rl~RRi~RD~~er~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~~ 137 (770)
++|.+.++.|...|+...+++.+++.+.+ +|++ .||.|.++.||+||+|+...
T Consensus 168 ~~~~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 168 DAPAEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred ECCHHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 99999999999999864447888888765 4665 68999999999999997543
No 58
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.33 E-value=5.8e-13 Score=133.51 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=108.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------ccc-cC---ccccccccHHHHHHHHHH----Hh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VKD-FK---YDDFSSLDLSLLSKNISD----IR 489 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~~~-~n---~d~p~t~D~~ll~~~L~~----L~ 489 (770)
+|||+|++||||||+++.|++ +|+.++++|.+.+.-- ... +. +...+.+|...|.+.+.. +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 8999999999887521 000 11 122366777777765543 33
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 568 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~- 568 (770)
.-+.+.+|.+........ .......++++|+.+++...+...+|..|+|++|.+.++.|.+.||... .+.
T Consensus 80 ~l~~i~hp~i~~~~~~~~-----~~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s----~~~~ 150 (179)
T cd02022 80 KLEAITHPLIRKEIEEQL-----AEARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLS----EEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCC----HHHH
Confidence 345566777655443221 0011136999999999988888999999999999999999999998432 221
Q ss_pred hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
.+.+....+. ++....||++|.|+.+
T Consensus 151 ~~r~~~Q~~~-----~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 151 EARIASQMPL-----EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence 1222222222 2345679999999754
No 59
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.29 E-value=2e-12 Score=130.02 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=101.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc----c---------ccccCccccccccHHHHHHHHH----HH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q---------VKDFKYDDFSSLDLSLLSKNIS----DI 488 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~----~---------~~~~n~d~p~t~D~~ll~~~L~----~L 488 (770)
++|||+|+.||||||+++.|++ +|++++++|...+.- . .+.--++.-+.+|...|.+.+. .+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999999 999999999886641 0 0111122346778777776552 23
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
+.-+.+.+|........+. ......+++++|..+++...+...+|..|+|++|.++++.|.+.|| |.+.+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~-----~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFI-----KRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHhHHHHHHHHHHH-----HhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 3333455665444332221 1111237999999999998999999999999999999999999997 333332
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
.+......|...+ .+.||+||+|+-
T Consensus 151 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 151 AEARIASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHHTS--HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHHhCCCHHHH-----HHhCCEEEECCC
Confidence 2334444444433 357999999974
No 60
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.27 E-value=5e-12 Score=128.74 Aligned_cols=160 Identities=15% Similarity=0.158 Sum_probs=105.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc-----c--------cccCccccc-cccHHHHHHHHHH----
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-----V--------KDFKYDDFS-SLDLSLLSKNISD---- 487 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~-----~--------~~~n~d~p~-t~D~~ll~~~L~~---- 487 (770)
.+|||+|+.||||||+++.|++.+|+.++++|.+.+.-- . +.--....+ .+|...|.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999988999999999876510 0 110122335 6777766665431
Q ss_pred HhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcc
Q 004177 488 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 567 (770)
Q Consensus 488 L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~ 567 (770)
+..-+.+.+|..-.....+. .......++++|..+++...+...+|..|+|++|.++++.|.+.|+ |.+.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~-----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEEL-----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHH-----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 22222344554332221111 1111246899999999988899999999999999999999999997 32222
Q ss_pred h-hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 568 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 568 ~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
. .+.....++ +++.+..||++|+|+.+
T Consensus 153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 153 EAEARINAQWP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence 1 222222222 23456789999998754
No 61
>PRK07667 uridine kinase; Provisional
Probab=99.24 E-value=1.9e-11 Score=124.20 Aligned_cols=113 Identities=13% Similarity=0.197 Sum_probs=94.3
Q ss_pred ccccHHHHHHH-HHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCCeEEEEecCchhHHHH
Q 004177 15 DSIDFDALVQN-LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS 93 (770)
Q Consensus 15 da~D~~~l~~~-L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~R 93 (770)
.++|++.|.+. +..|++++.+..|.||+.++..... ...+++.+||||||++++.+.+++++|++|||++|.++++.|
T Consensus 77 ~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R 155 (193)
T PRK07667 77 LQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLR 155 (193)
T ss_pred hhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHH
Confidence 46899999876 5789999999999999999876543 345677899999999988888999999999999999999999
Q ss_pred HhhhccccCCCHHHHHHHHHHhhhcccc---ccCCcccEEEe
Q 004177 94 KVQYDIGDSCSLDSLIDSIFPLFRKHIE---PDLHHAQIRIN 132 (770)
Q Consensus 94 Ri~RD~~er~s~e~v~~~v~p~~~~yI~---P~k~~ADiVI~ 132 (770)
++.|+- .+.+....+|.|.+..|+. | +..||+||.
T Consensus 156 ~~~r~~---~~~~~~~~r~~~a~~~y~~~~~~-~~~ad~i~~ 193 (193)
T PRK07667 156 ESEETQ---KNLSKFKNRYWKAEDYYLETESP-KDRADLVIK 193 (193)
T ss_pred HhcccH---hHHHHHHHHhHHHHHHHHhhcCh-HhhCcEEeC
Confidence 998763 3467777788888888855 6 789999973
No 62
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.21 E-value=1.6e-11 Score=124.76 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=105.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c----cccCccccccccHHHHHHHHH----H
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----D 487 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~----~~~n~d~p~t~D~~ll~~~L~----~ 487 (770)
+.+|||+|++||||||+++.|++ +|+.++++|.+.+..- . +.--+...+.+|...|.+.+. .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999999 8999999999876521 0 111122235677776666553 2
Q ss_pred HhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcc
Q 004177 488 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 567 (770)
Q Consensus 488 L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~ 567 (770)
+..-+.+.+|..-....... .......++++|+.+++...+...+|..|+|++|.+.++.|.+.|+. .+.+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~-----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s~e 151 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQL-----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDG----LSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 33233455555433322111 11112369999999999988889999999999999999999988863 2222
Q ss_pred h-hhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 568 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 568 ~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
. .+......+. +.....||++|+|+-
T Consensus 152 ~~~~ri~~Q~~~-----~~~~~~ad~vI~N~g 178 (194)
T PRK00081 152 EAEAIIASQMPR-----EEKLARADDVIDNNG 178 (194)
T ss_pred HHHHHHHHhCCH-----HHHHHhCCEEEECCC
Confidence 1 2222222332 223457999999864
No 63
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.21 E-value=2.5e-11 Score=124.30 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=108.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc-cc--------cccC---ccccccccHHHHHHHHHH---
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE-QV--------KDFK---YDDFSSLDLSLLSKNISD--- 487 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~-~~--------~~~n---~d~p~t~D~~ll~~~L~~--- 487 (770)
..|++|||+|+.||||||+++.|++.+|..+++.|...+.- +. ..+. ++ .+.+|...|.+.+..
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKE 82 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHH
Confidence 45799999999999999999999988899999999886642 10 0111 11 366887777776532
Q ss_pred -HhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhh--hhcCCeEEEEEcChhHHHHHHHHhcccccCc
Q 004177 488 -IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 564 (770)
Q Consensus 488 -L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l--~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~ 564 (770)
++.-+.+.+|........+. . ..+..++++|.++++.... ...+|..|+|++|.+.++.|.+.||......
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~-----~-~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~ 156 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQV-----K-ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQ 156 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHH-----H-hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHH
Confidence 33334566676554432221 1 1134689999999987654 5689999999999999999999997433211
Q ss_pred CcchhhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 565 FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 565 ~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
..+......|... ..+.||+||+|+-
T Consensus 157 ---a~~ri~~Q~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 157 ---AVAFINLQISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred ---HHHHHHhCCCHHH-----HHHhCCEEEECcC
Confidence 1223333333322 3467999999986
No 64
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.20 E-value=2.4e-11 Score=123.18 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=112.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------------Cccccccceeccccc---------cccCccccccccHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS 479 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-------------~~vis~Ddfy~~~~~---------~~~n~d~p~t~D~~ 479 (770)
.+...++|++|++|+||||++..++..-+ +.++.||.|+..... ....++.|.++|-+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 34577999999999999999999987431 235899999876421 12235789999999
Q ss_pred HHHHHHHHHh--cCCCccccccccccCccCCccceeeccCccEEEEEccccch-----hhhhhcCCeEEEEEcChhHHHH
Q 004177 480 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI 552 (770)
Q Consensus 480 ll~~~L~~L~--~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-----~~l~~~lD~~I~Vd~~~d~rL~ 552 (770)
++.+.++.|+ .-..+-+|.||+..|+..+. .+.++...+|||+||.|++. ..+.+.+|.+++++.+.+...+
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~D-dicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPD-DICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCcc-ceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 9999999998 45578899999999998753 45566678999999999985 4567889999999999999999
Q ss_pred HHHHhcccc
Q 004177 553 SRVQRDKSR 561 (770)
Q Consensus 553 Rri~RD~~~ 561 (770)
|.-.|....
T Consensus 275 RVa~RHl~s 283 (323)
T KOG2702|consen 275 RVAKRHLQS 283 (323)
T ss_pred HHHHHhhcc
Confidence 999888765
No 65
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.18 E-value=3.3e-11 Score=123.18 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=106.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc----c---------ccccCccccccccHHHHHHHHH----HH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q---------VKDFKYDDFSSLDLSLLSKNIS----DI 488 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~----~---------~~~~n~d~p~t~D~~ll~~~L~----~L 488 (770)
++|||+|++||||||+++.|+. +|.++++.|...+.. . .+.--.+..+++|...|.+.+. .+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5899999999999999999998 799999999765431 1 0111123347788877776553 23
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
..-+.+.+|........+.. . ....+..++++|..+++...+...+|..|+|+++.++++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~ 153 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD 153 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33335566665333221110 0 0012347899999999988888899999999999999999998885 433332
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
........+.+.+ ...||++|+|+.+
T Consensus 154 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHHH-----HHhCCEEEECcCC
Confidence 2333334444332 3579999998764
No 66
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.15 E-value=2.8e-11 Score=123.40 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c----cccCccccccccHHHHHHHHH----HHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----DIR 489 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~----~~~n~d~p~t~D~~ll~~~L~----~L~ 489 (770)
+|||+|++||||||+++.|++ +|..+++.|...+.-- . +..-++..+.+|...|.+.+. .++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999987 6999999998866411 0 111122346778777776553 233
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 568 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~- 568 (770)
.-+.+.+|.......... .......++++|..+++...+...+|..|+|++|.++++.|.+.|+. .+.+.
T Consensus 80 ~L~~i~hP~v~~~~~~~~-----~~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g----~s~e~a 150 (196)
T PRK14732 80 ALNELIHPLVRKDFQKIL-----QTTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDG----MKKEDV 150 (196)
T ss_pred HHHHHhhHHHHHHHHHHH-----HHHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence 334456666544332111 11112368999999999888888999999999999999999999963 22222
Q ss_pred hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
........ -+.+....||++|.|+.+
T Consensus 151 ~~ri~~Q~-----~~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 151 LARIASQL-----PITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHHcC-----CHHHHHHhCCEEEECCCC
Confidence 22222222 234456789999998754
No 67
>PLN02422 dephospho-CoA kinase
Probab=99.13 E-value=6.4e-11 Score=123.40 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=108.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c----cccCccccccccHHHHHHHHH----HH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----DI 488 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~----~~~n~d~p~t~D~~ll~~~L~----~L 488 (770)
.+|||+|+.||||||+++.|++ +|+.+++.|...+.-- . +.--+...+++|...|.+.+. .+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999995 7999999999876510 0 111123347788877777653 23
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
+.-+.+.+|..-.....+.. ... ..+..++++|.++++...+...+|..|+|++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee 153 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ 153 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33345666665332221110 000 12246999999999998888899999999999999999999997 332222
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
........+... ....||++|.|+.+
T Consensus 154 a~~Ri~~Q~~~ee-----k~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQMPLDW-----KRSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHcCChhH-----HHhhCCEEEECCCC
Confidence 223333333322 25679999999864
No 68
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=99.10 E-value=3.2e-10 Score=115.61 Aligned_cols=126 Identities=13% Similarity=0.061 Sum_probs=96.2
Q ss_pred ccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh----h---------HHH
Q 004177 164 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TLG 230 (770)
Q Consensus 164 ~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~---------~~~ 230 (770)
...++|+|||+|+++|+..+.+| |||+.|+++.+|+|+|....++. +.|.|+|+.| . +..
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~ 104 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGE 104 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCccc
Confidence 45689999999999999999999 99999999999999886433443 8999999999 1 556
Q ss_pred HHHhcC----cceeEEEEEEEEEEEeCC----EEEEEec--cC--CCCCCeEEEEec----ChhHHH----HHHHHcCCC
Q 004177 231 GLLDLG----YSVVASYKRASTYVVYGN----LSVSFET--ID--TLDETFMVLRGT----NRKTVG----AEALRMGIN 290 (770)
Q Consensus 231 iL~~LG----f~~~~~~~K~R~~y~~~~----~~v~lD~--v~--~lG~~FvEIE~~----~~~~i~----~~a~~Lgl~ 290 (770)
++..++ +.|++++++.|+.|.+.. ++|++|. +. +--.|.-|||.. +.+.+. .++...|+.
T Consensus 105 ~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l~ 184 (197)
T cd07756 105 LLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPLR 184 (197)
T ss_pred CHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence 788884 999999999999999844 9999999 32 222356666654 344544 445556665
Q ss_pred CCcccc
Q 004177 291 GPWITK 296 (770)
Q Consensus 291 ~~~~~~ 296 (770)
.+...|
T Consensus 185 ~~~~SK 190 (197)
T cd07756 185 LSNRSK 190 (197)
T ss_pred CCCcCH
Confidence 544443
No 69
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.09 E-value=9e-11 Score=119.07 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=108.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHh--CCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-----HHhhhcCCeE
Q 004177 8 VDEGNDLDSIDFDALVQNLQDLT--EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIR 80 (770)
Q Consensus 8 ~~d~d~Pda~D~~~l~~~L~~Lk--~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-----~~l~~l~Dlk 80 (770)
..--..|++||-++|.+.++.|+ .-.++.+|.|||.-+++++......+.++|||+||.|+|+ +.+.+++|.+
T Consensus 183 harRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k 262 (323)
T KOG2702|consen 183 HARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDK 262 (323)
T ss_pred HhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhh
Confidence 34455899999999999999999 4578999999999999998877778899999999999998 4677899999
Q ss_pred EEEecCchhHHHHHhhhccccC--CCHHHHHHHH----HHhhhccccccCCcccEEEeC
Q 004177 81 VAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 81 IfVd~d~d~rl~RRi~RD~~er--~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~ 133 (770)
.|||.+.+....|...|+++.+ .++++..+++ +++ .++|...+-.+|+||+.
T Consensus 263 ~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N-~~~I~k~~i~~D~iv~~ 320 (323)
T KOG2702|consen 263 YKIDVDYEAAEERVAKRHLQSGLVTTIAEARERFDSNDLLN-GRDIDKHLIKVDNIVHI 320 (323)
T ss_pred eeccccHHHHHHHHHHHhhcccccCCHHHHHhhcccccccc-hHHHHhcccchHHHHHh
Confidence 9999999999999999999999 6888888876 566 45677778888888754
No 70
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.08 E-value=1.4e-10 Score=121.96 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=104.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c----cccCccccccccHHHHHHHHH----H
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----D 487 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~----~~~n~d~p~t~D~~ll~~~L~----~ 487 (770)
+++|||+|+.||||||+++.|.+.+|.+++++|...+.-- . +..-....+.+|...|.+.+. .
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 3689999999999999999999988999999998876510 1 111112236788888877553 2
Q ss_pred HhcCCCccccccccccCccCCc---cce--ee-ccCccEEEEEccccchhhh-hhcCCeEEEEEcChhHHHHHHHHhccc
Q 004177 488 IRNGRRTKVPIFDLETGARSGF---KEL--EV-SEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKS 560 (770)
Q Consensus 488 L~~g~~v~~P~yD~s~g~r~~~---~~~--~~-~~~~~VVIvEG~~~l~~~l-~~~lD~~I~Vd~~~d~rL~Rri~RD~~ 560 (770)
++.-+.+.+|..-.....+... +.. .. .....++++|.++++...+ ...+|..|+|+++.++++.|.+.|+
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~-- 158 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN-- 158 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC--
Confidence 2333345566543221111100 000 00 1123599999999998764 4578999999999999999998885
Q ss_pred ccCcCcch-hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 561 RMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 561 ~rG~~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
|.+.+. .+......+. ...+..||++|.|+
T Consensus 159 --g~s~eea~~Ri~~Q~~~-----~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 159 --GFSKEEALQRIGSQMPL-----EEKRRLADYIIEND 189 (244)
T ss_pred --CCCHHHHHHHHHhCCCH-----HHHHHhCCEEEECC
Confidence 332222 2222222232 22456799999998
No 71
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=2.4e-10 Score=117.47 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=99.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c-ccc-----Cccccc--cccHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF-----KYDDFS--SLDLSLLSKNI 485 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~-~~~-----n~d~p~--t~D~~ll~~~L 485 (770)
..+++|||+|++||||||+++.|.+ +|+.+++.|...+.-. . ..+ ..+..+ .+|...+.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4579999999999999999999998 8999999996654310 0 000 011112 25555544332
Q ss_pred H----HHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccc
Q 004177 486 S----DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 561 (770)
Q Consensus 486 ~----~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~ 561 (770)
. .+..-+.+.+|.......... ... ...+..++++|+.+++...+...+|..++|+++.++++.|.+.|+..
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i--~~~-~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~- 157 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAV--DRA-ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG- 157 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHH--HHH-HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC-
Confidence 1 222223444554332221111 000 11234699999998888778888999999999999999999998643
Q ss_pred cCcCcch-hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 562 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 562 rG~~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
+.+. .+.....++.. .. .+.||++|.|+-+
T Consensus 158 ---s~e~~~~Ri~~q~~~~-~~----~~~ad~vI~N~g~ 188 (208)
T PRK14731 158 ---SREEIRRRIAAQWPQE-KL----IERADYVIYNNGT 188 (208)
T ss_pred ---CHHHHHHHHHHcCChH-HH----HHhCCEEEECCCC
Confidence 1111 22222222222 12 2358999988653
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.06 E-value=1.9e-11 Score=128.55 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=121.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc---------------------------------cccC-
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------------------------------KDFK- 469 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~---------------------------------~~~n- 469 (770)
.--+++|.||||||||||.++|+..+.+. ++..+..+.+. +.+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~ 104 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH 104 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc
Confidence 35689999999999999999999988643 22222222110 1111
Q ss_pred ---ccccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcC
Q 004177 470 ---YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGG 546 (770)
Q Consensus 470 ---~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~ 546 (770)
|..++.-|.+.+.+.|+.+........+.-+.|.|+|+ .+.+ +.+++.+.-.++.+|+...+|+...+
T Consensus 105 ~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQ---rv~i---ArALaQ~~~iLLLDEPTs~LDi~~Q~--- 175 (258)
T COG1120 105 LGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQ---RVLI---ARALAQETPILLLDEPTSHLDIAHQI--- 175 (258)
T ss_pred cccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHH---HHHH---HHHHhcCCCEEEeCCCccccCHHHHH---
Confidence 22356667778888888887777777787788888876 2222 45666666667778888888876544
Q ss_pred hhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCC
Q 004177 547 VHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 626 (770)
Q Consensus 547 ~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~m 626 (770)
.+...+.+-..+.|. +-+++-|+.|.++.+.++++++++|+.++.|.+..+|
T Consensus 176 ---evl~ll~~l~~~~~~-------------------------tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 176 ---EVLELLRDLNREKGL-------------------------TVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred ---HHHHHHHHHHHhcCC-------------------------EEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 344444333223232 4577889999999999999999999999999999999
Q ss_pred Chhhhhcc
Q 004177 627 DPAKFCSS 634 (770)
Q Consensus 627 t~e~v~~f 634 (770)
|+|.+++-
T Consensus 228 T~e~l~~V 235 (258)
T COG1120 228 TEENLREV 235 (258)
T ss_pred CHHHHHHH
Confidence 99987643
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.02 E-value=4.7e-10 Score=104.26 Aligned_cols=115 Identities=24% Similarity=0.334 Sum_probs=74.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCcccc--ccccHHHHHHHHHHHhcCCCccccccccccC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF--SSLDLSLLSKNISDIRNGRRTKVPIFDLETG 504 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p--~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g 504 (770)
+|+|+|++||||||+|+.|++.++..++++|+++..........+.+ ...+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 68999999999999999999999999999999543322211111111 12334445555544332
Q ss_pred ccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcC
Q 004177 505 ARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 565 (770)
Q Consensus 505 ~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~ 565 (770)
......+|+||.+... .......|..++++.+.+..+.|++.|...++|+.
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 1235789999966511 11223456788998888878888888877777764
No 74
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=99.00 E-value=1.2e-09 Score=108.84 Aligned_cols=105 Identities=8% Similarity=-0.046 Sum_probs=81.0
Q ss_pred ccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh----hHH------
Q 004177 160 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------ 229 (770)
Q Consensus 160 ~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~------ 229 (770)
.......+.|+|||+|++. ..++++ +||.|..++++.+|+|+|.-. +.|.|+|+.| .+.
T Consensus 27 ~~~~~~~~~~~YfDT~d~~--l~~~~l---rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~ 95 (174)
T cd07374 27 GEPETVQLRAIYFDTPDLR--LARAGL---RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA 95 (174)
T ss_pred ccccceeeeeeEecCccch--hhhCCc---EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence 3345577999999999884 344555 334444466899999976532 4789999999 222
Q ss_pred ----HHHHhcCcceeEEEEEEEEEEEeC-----CEEEEEeccCC-------CCCCeEEEEecC
Q 004177 230 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTN 276 (770)
Q Consensus 230 ----~iL~~LGf~~~~~~~K~R~~y~~~-----~~~v~lD~v~~-------lG~~FvEIE~~~ 276 (770)
.++..+||.|++++.+.|++|.++ .++|++|.++. .++ ++|+|.++
T Consensus 96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~ 157 (174)
T cd07374 96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVEL 157 (174)
T ss_pred hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEE
Confidence 356779999999999999999987 49999999986 677 99999883
No 75
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.99 E-value=5.4e-10 Score=112.79 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=102.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc----c-----c-cccC---ccccccccHHHHHHHHH----HHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V-KDFK---YDDFSSLDLSLLSKNIS----DIR 489 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~----~-----~-~~~n---~d~p~t~D~~ll~~~L~----~L~ 489 (770)
+|||+|+.||||||+++.|++..+..++++|.+.+.- . . ..+. ++..+..|...|.+.+. .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999997669999999986541 0 0 0111 12235666666665442 122
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch-
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 568 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~- 568 (770)
.-+.+..|..-........ . ......++++|..+++...+...+|..++|+++.+.++.|.+.|+ |.+.+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 2234455554333221110 0 111225889999888877888899999999999999999999998 332222
Q ss_pred hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
.+.+....+. ...+..||++|.|+..
T Consensus 153 ~~r~~~q~~~-----~~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQMDI-----EERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECCCC
Confidence 2222222222 2345679999998753
No 76
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.98 E-value=4.8e-10 Score=114.53 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=101.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc---------cccccCcc-----ccccccHHHHHHHHH----
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------QVKDFKYD-----DFSSLDLSLLSKNIS---- 486 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~---------~~~~~n~d-----~p~t~D~~ll~~~L~---- 486 (770)
+++|||+|..||||||+++.+++ +|.+++++|++.+.- .... .|+ .-+.+|...|.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~-~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE-RFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH-HcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 57999999999999999999999 999999999998841 0000 111 223455554444331
Q ss_pred HHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 487 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 487 ~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
.+..-+.+.+|......- .. ..... ..++++|-.+++.......+|..|.|++|.++++.|.++|+...++.
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~----~~~~~-~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~-- 151 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VV----IDGAR-SPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEED-- 151 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HH----HHHhh-CCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHH--
Confidence 122223444554322211 00 00011 22888888888876666669999999999999999999998322211
Q ss_pred chhhHHhhccchhhhccccccCcccEEEcCCCCC
Q 004177 567 SQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 600 (770)
Q Consensus 567 ~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 600 (770)
.........+..++ ...||++++|++..
T Consensus 152 -~~~~~~~Q~~~~ek-----~~~ad~vi~n~~~i 179 (201)
T COG0237 152 -AEARLASQRDLEEK-----LALADVVIDNDGSI 179 (201)
T ss_pred -HHHHHHhcCCHHHH-----HhhcCChhhcCCCH
Confidence 11223334444444 35799999998764
No 77
>PRK06217 hypothetical protein; Validated
Probab=98.98 E-value=1.7e-09 Score=108.71 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=74.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 505 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~ 505 (770)
..|.|+|++||||||+++.|++.++.+++++|++++...... +...... ...+...+..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~---------------- 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP--FTTKRPP-EERLRLLLEDLR---------------- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC--ccccCCH-HHHHHHHHHHHh----------------
Confidence 358899999999999999999999999999999987432111 1111111 111111111110
Q ss_pred cCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccc
Q 004177 506 RSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 561 (770)
Q Consensus 506 r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~ 561 (770)
..+-+|+||.+... ..+...+|..||+++|.+.++.|...|....
T Consensus 63 -----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 63 -----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred -----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 12357889998754 5567789999999999999999999997653
No 78
>PRK06547 hypothetical protein; Provisional
Probab=98.96 E-value=3.3e-09 Score=106.07 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=86.1
Q ss_pred cHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCC-----eEEEEecCchhHHH
Q 004177 18 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLI 92 (770)
Q Consensus 18 D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~D-----lkIfVd~d~d~rl~ 92 (770)
+.+.+.+.+.+ .|++...| ||+.++.+... ..+.++++||+||++++++++++++| ++|||++|.++|+.
T Consensus 59 ~~~~l~~~~l~--~g~~~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~ 133 (172)
T PRK06547 59 ASEHVAEAVLD--EGRPGRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKE 133 (172)
T ss_pred HHHHHHHHHHh--CCCCceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHH
Confidence 55667777766 78888888 99998866432 35677889999999999988999999 99999999999999
Q ss_pred HHhhhccccCCCHHHHHHHHHHhhhcccccc--CCcccEEEe
Q 004177 93 SKVQYDIGDSCSLDSLIDSIFPLFRKHIEPD--LHHAQIRIN 132 (770)
Q Consensus 93 RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~--k~~ADiVI~ 132 (770)
|++.||.. .....++|.+.++.|..-+ +.+||+|+.
T Consensus 134 R~~~Rd~~----~~~~~~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 134 RALARDPD----YAPHWEMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHhcCch----hhHHHHHHHHHHHHHHhcCCChhccEEEec
Confidence 99999965 3455678888888877533 588999874
No 79
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.93 E-value=3.5e-09 Score=101.32 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=85.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
+|.|+|++||||||+++.|+..++.++++.|...... .....-..+ +...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~-~~~~~~~~~---~~~~i~~~l~~~~~---------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEE-VGKLASEVA---AIPEVRKALDERQR---------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHH-HHHHHHHhc---ccHhHHHHHHHHHH----------------
Confidence 5789999999999999999999999999988443221 000000000 00111111111100
Q ss_pred CCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhccccc-CcCcch--hhHHhhccchhhhcc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI 583 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r-G~~l~~--~q~~~~v~p~~~~~I 583 (770)
.+ . ....+|+||.++.+- +.+..|+.||++++.+.+..|++.|+...+ |.+.+. ..+...-.+.+..|+
T Consensus 61 ----~~--~-~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 ----EL--A-KKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred ----HH--h-hCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 00 1 123578899987542 235689999999999999999999884322 333332 233334455667788
Q ss_pred cccc-CcccEEEcC
Q 004177 584 EPHL-VHAHLKIRN 596 (770)
Q Consensus 584 ~p~~-~~ADivI~n 596 (770)
.++. ..-|++|+.
T Consensus 133 ~~~~~~~~dl~i~~ 146 (147)
T cd02020 133 APLKLAEDAIVIDT 146 (147)
T ss_pred ccccCCCCcEEEeC
Confidence 7764 445577664
No 80
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.91 E-value=5.3e-09 Score=102.00 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=72.7
Q ss_pred eeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh---hHHHHHHhcCcceeEEEE
Q 004177 168 TDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYK 244 (770)
Q Consensus 168 ~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---~~~~iL~~LGf~~~~~~~ 244 (770)
.+.|+.+ ..++++ |||..++++.||||||+.+ ++|.|+|+.+ ...+++. +.....++
T Consensus 25 ~Q~Yl~~------~~~~~l-----RiR~~~~~~~lT~K~~~~~------~~R~E~E~~i~~~~~~~l~~---~~~~~~I~ 84 (148)
T cd07891 25 RQGYLST------DPERTV-----RVRIAGDRAYLTIKGPTNG------LSRYEFEYEIPLADAEELLA---LCEGPVIE 84 (148)
T ss_pred EEEeeeC------CCCcEE-----EEEEeCCEEEEEEEeCCCC------ceEEEEEEeCCHHHHHHHHh---cCCCCeEE
Confidence 3556653 334567 9999999999999998643 5789999998 3334443 56789999
Q ss_pred EEEEEEEeCCEEEEEeccCCCCCC--eEEEEecChh
Q 004177 245 RASTYVVYGNLSVSFETIDTLDET--FMVLRGTNRK 278 (770)
Q Consensus 245 K~R~~y~~~~~~v~lD~v~~lG~~--FvEIE~~~~~ 278 (770)
|.|..|.+++..++||.++|+|.+ |+|||..+++
T Consensus 85 K~R~~~~~~~~~~~lD~~~g~~~gL~~~EiE~~~e~ 120 (148)
T cd07891 85 KTRYRVPHGGHTWEVDVFHGENAGLVVAEIELPSED 120 (148)
T ss_pred EEEEEEEeCCEEEEEEEEcCCCCceEEEEEEcCCcc
Confidence 999999999999999999999875 9999998644
No 81
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=98.89 E-value=2.1e-09 Score=107.67 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=110.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc---------c----cccCccccccccHHHHHHHHH----H
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNIS----D 487 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~---------~----~~~n~d~p~t~D~~ll~~~L~----~ 487 (770)
.++||++|+.||||||+++.+. .+|+++|+.|...+.-- . ++--.-.-+.+|.+.|-+.+. .
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 4799999999999999999999 58999999998876510 0 000011234556655555432 2
Q ss_pred HhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcc
Q 004177 488 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 567 (770)
Q Consensus 488 L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~ 567 (770)
...-..+.+|...+....... -....+.+++++|-+++|+..+.+.+-..|.|.+|.++.+.|.+.||...+..
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~d--- 153 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEED--- 153 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHH---
Confidence 222234566665544321110 01245689999999999998888899999999999999999999998322111
Q ss_pred hhhHHhhccchhhhccccccCcccEEEcCCCCCCC
Q 004177 568 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 602 (770)
Q Consensus 568 ~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l 602 (770)
.........|..+ ..+.||+||+|+-++.-
T Consensus 154 Ae~Rl~sQmp~~~-----k~~~a~~Vi~Nng~~~~ 183 (225)
T KOG3220|consen 154 AENRLQSQMPLEK-----KCELADVVIDNNGSLED 183 (225)
T ss_pred HHHHHHhcCCHHH-----HHHhhheeecCCCChHH
Confidence 1223334444433 34679999999877643
No 82
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.87 E-value=7.1e-10 Score=107.64 Aligned_cols=112 Identities=26% Similarity=0.364 Sum_probs=80.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc-cccCccccccccHHHHHHHHHHHhcCCCccccccccccC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG 504 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~-~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g 504 (770)
++|.|+|++||||||+++.|++.+|.+++|...+|+.-.. ..+ ++.-+.+ +. -..|.+|+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gm--------sl~ef~~----~A----E~~p~iD~~iD 64 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGM--------SLEEFSR----YA----EEDPEIDKEID 64 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCC--------CHHHHHH----HH----hcCchhhHHHH
Confidence 3789999999999999999999999999998888875321 111 1221221 11 13566676666
Q ss_pred ccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 505 ARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 505 ~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.|+. .... .+-+|+||-++++-. ....|++||+.+|..+|..|...|+.
T Consensus 65 ~rq~----e~a~-~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 65 RRQK----ELAK-EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred HHHH----HHHH-cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcC
Confidence 5541 1122 567899999988721 15789999999999999999999974
No 83
>PRK08118 topology modulation protein; Reviewed
Probab=98.86 E-value=7.6e-09 Score=102.87 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=73.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
-|.|+||+||||||||+.|++.++.+++++|..+.... +.... -+...+.+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-----w~~~~---~~~~~~~~~~~~----------------- 57 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-----WEGVP---KEEQITVQNELV----------------- 57 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-----CcCCC---HHHHHHHHHHHh-----------------
Confidence 47789999999999999999999999999998876321 11111 111122222211
Q ss_pred CCccceeeccCccEEEEEccccc-hhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 564 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l-~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~ 564 (770)
. .+-+|+||.+.. .+...+..|..||++.|.+.++.|.+.|....+|.
T Consensus 58 ---------~-~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 58 ---------K-EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred ---------c-CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 0 134899998874 34455679999999999999999999998765554
No 84
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.85 E-value=3.5e-09 Score=119.03 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=99.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc----cc-----c----cccCccccccccHHHHHHHHHH----H
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNISD----I 488 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~----~~-----~----~~~n~d~p~t~D~~ll~~~L~~----L 488 (770)
+.|||+|+.||||||+++.|++ +|+.++++|...+. .. . +.--.+..+++|...|.+.+.. +
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 89999999988765 11 0 1111223467888877776532 2
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
+.-+.+.+|..-..... .+.......++++|..+++...+...+|..|+|++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~I~~~i~~-----~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~ 151 (395)
T PRK03333 81 AVLNGIVHPLVGARRAE-----LIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD 151 (395)
T ss_pred HHHHHhhhHHHHHHHHH-----HHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 22233455543322111 111112224555555666667888899999999999999999887643 433222
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
...+....+ .++....||++|+|+-+
T Consensus 152 a~~ri~~Q~~-----~e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 152 ARARIAAQAS-----DEQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHhcCC-----hHHHHHhCCEEEECCCC
Confidence 111221112 12336679999998765
No 85
>PRK07261 topology modulation protein; Provisional
Probab=98.84 E-value=1.2e-08 Score=101.89 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=77.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
.|+|.|++|||||||++.|+..++.+++++|.++.... +. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----~~---~~~~~~~~~~~~~~~----------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----WQ---ERDDDDMIADISNFL----------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----cc---cCCHHHHHHHHHHHH-----------------
Confidence 47899999999999999999999999999999876332 11 112222333222211
Q ss_pred CCccceeeccCccEEEEEccccc-h-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l-~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
.... +|+||.+.- . +...+.+|..||++.|...++.|.+.|....+|...
T Consensus 57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence 1123 899999975 2 555668999999999999999999999987777643
No 86
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.81 E-value=5.5e-09 Score=120.10 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc----ccccCccccccccHHHHHHHHHHHh-----cCCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIR-----NGRRT 494 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~----~~~~n~d~p~t~D~~ll~~~L~~L~-----~g~~v 494 (770)
++.+|+|.|||||||||+++.|++.||..+++.|++|+... ...++++++.++ ..+.+.+.... .+..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence 57899999999999999999999999999999999999742 122444444332 33333333222 22357
Q ss_pred cccccccccCccCCc--------------cce------eeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHH
Q 004177 495 KVPIFDLETGARSGF--------------KEL------EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 554 (770)
Q Consensus 495 ~~P~yD~s~g~r~~~--------------~~~------~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rr 554 (770)
.+|.+|.+..-|... +.+ ... ...-+|+||--++.--+ +..|++||++++.+.+..||
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~-~~~~iV~eGRDigtvV~-P~AdlKIfL~As~evRa~RR 438 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIG-EKGGLVAEGRDIGTHVF-PDAELKIFLTASVEERARRR 438 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHh-hcCCEEEEcccceeEEc-CCCCEEEEEECCHHHHHHHH
Confidence 778888776544321 000 001 12348999988765222 34699999999999999998
Q ss_pred HHhc
Q 004177 555 VQRD 558 (770)
Q Consensus 555 i~RD 558 (770)
..+.
T Consensus 439 ~~~l 442 (512)
T PRK13477 439 ALDL 442 (512)
T ss_pred Hhhh
Confidence 7664
No 87
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=98.77 E-value=3.5e-08 Score=97.60 Aligned_cols=115 Identities=22% Similarity=0.365 Sum_probs=100.8
Q ss_pred CCCCeEEEE-EeCceeeEEeeeeccccCeeeccccceEEe--hhhHHHHHhhhhhhhhheeeeeeEEecCeEEEEEeccc
Q 004177 655 TESDCIRVR-ICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQ 731 (770)
Q Consensus 655 ~~~~~i~~r-~~~~r~~l~~~~~~~~~~~~~~p~~~f~~~--~~~~~gl~~lgy~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (770)
.....+|+| ..+|+..|.+-.|++|++..++-.++|+|+ -.+.--|.+|||..++-++.+..+|..|+++|++|.++
T Consensus 47 ~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~Ve 126 (178)
T COG1437 47 DTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKALEILKRLGFKEVAVVKKTREIYKVGNVTIELDAVE 126 (178)
T ss_pred cCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHHHHHHHcCCceeeEEEEEEEEEeeCCEEEEEeccc
Confidence 345789999 778999999999999999988888888887 67788899999999999999999999999999999999
Q ss_pred cCCCceEEEec---------CCHHHHHHhhhhcccc-cccccchhhccC
Q 004177 732 DAPSPYLQIKG---------VDKEAVAAAGSTLKLD-GSYTTKVMSLAL 770 (770)
Q Consensus 732 ~~~~~~~~~~g---------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~ 770 (770)
+||. |+-|-= ..++.+-+.+.+|||. +.-+++||+|++
T Consensus 127 gLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYlELl 174 (178)
T COG1437 127 GLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYLELL 174 (178)
T ss_pred CCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHHHHH
Confidence 9986 998831 2336688999999997 999999999985
No 88
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.74 E-value=5.1e-08 Score=94.96 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=68.1
Q ss_pred hhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh---hHHHHHHhcCcceeEEEEEEEEEEEe-CCEEEE
Q 004177 183 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS 258 (770)
Q Consensus 183 deal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---~~~~iL~~LGf~~~~~~~K~R~~y~~-~~~~v~ 258 (770)
++++ |||..++++.|||||+. + ++|.|+|..| .+.++|. +.....++|.|..|.+ ++..++
T Consensus 32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~ 96 (146)
T cd07761 32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE 96 (146)
T ss_pred CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence 4677 99999999999999864 5 6999999999 6666665 7788899999999999 999999
Q ss_pred EeccCCCCC--CeEEEEecCh
Q 004177 259 FETIDTLDE--TFMVLRGTNR 277 (770)
Q Consensus 259 lD~v~~lG~--~FvEIE~~~~ 277 (770)
||.++|.+. -|+|||..++
T Consensus 97 vD~~~g~~~gL~~~EvE~~se 117 (146)
T cd07761 97 LDVFEGRLTGLVYAEVEFPSE 117 (146)
T ss_pred EEEEcCCCCCeEEEEEEcCCc
Confidence 999999872 2888888753
No 89
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.64 E-value=5.1e-08 Score=95.92 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=68.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 505 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~ 505 (770)
++|+|+|++||||||+++.|++.++.++++.|++++... ...+. +...+.... .. .|.++.....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~-~~~g~------~~~~~~~~~---~~-----~~~~~~~~~~ 65 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA-AKMGL------DLIEFLNYA---EE-----NPEIDKKIDR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH-HHcCC------CHHHHHHHH---hc-----CcHHHHHHHH
Confidence 379999999999999999999999999999987765421 01110 010000000 00 0000000000
Q ss_pred cCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 506 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 506 r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
+. .........+|+||.+..+- +....|+.|||++|.++++.|...|+.
T Consensus 66 ~i----~~~~~~~~~~Vi~g~~~~~~-~~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 66 RI----HEIALKEKNVVLESRLAGWI-VREYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred HH----HHHHhcCCCEEEEeccccee-ecCCcCEEEEEECCHHHHHHHHHHccC
Confidence 00 00111234667799876441 245578999999999999999888863
No 90
>PRK01184 hypothetical protein; Provisional
Probab=98.61 E-value=6.1e-08 Score=97.23 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=68.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG 504 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g 504 (770)
+++|+|+|++||||||+++ +++.+|+.+++.|+..+..-.. .+..... +.+.+....+... .....+.....
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~--~~~~~~~~~~~ 72 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKE--LGMDAVAKRTV 72 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHH--HChHHHHHHHH
Confidence 3589999999999999987 6777899999988777643111 0111110 0111111111110 00000000001
Q ss_pred ccCCccceeeccCccEEEEEccccch--hhhhhcCC---eEEEEEcChhHHHHHHHHhcc
Q 004177 505 ARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 505 ~r~~~~~~~~~~~~~VVIvEG~~~l~--~~l~~~lD---~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.. +. ..+..++|++|+.... ..+++.++ ..|+++++.+.++.|...|+.
T Consensus 73 ~~-----i~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~ 126 (184)
T PRK01184 73 PK-----IR-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR 126 (184)
T ss_pred HH-----HH-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 00 00 1235789999985432 34455555 899999999999999988763
No 91
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.61 E-value=1.8e-07 Score=93.02 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=123.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecccc-------------ccccCccccccccHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-------------VKDFKYDDFSSLDLSLLSKNI 485 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~-------------~~~~n~d~p~t~D~~ll~~~L 485 (770)
+-.+|+|+|.||+|-||...+..+.++ +..+.+|.|++-.. -..+.+-.|.+.|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 345899999999999999998888763 55778999976411 112334568899999999999
Q ss_pred HHHhcCCCccccccccc----------cCccCCccceeeccCccEEEEEccccch----hhhhhcCCeEEEEEcChhHHH
Q 004177 486 SDIRNGRRTKVPIFDLE----------TGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHL 551 (770)
Q Consensus 486 ~~L~~g~~v~~P~yD~s----------~g~r~~~~~~~~~~~~~VVIvEG~~~l~----~~l~~~lD~~I~Vd~~~d~rL 551 (770)
........-....|-+. -|.-.+|.. ..++.+++..||.+.+. -.+.+.+|+.|-+.+-..+..
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~--lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEW 161 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQP--LPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEW 161 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCccc--CCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHH
Confidence 88765333333333222 233333322 34568999999999874 357889999999988889999
Q ss_pred HHHHHhcccccCcCcch-hhHHhhccchhhhccccccCcccEEE
Q 004177 552 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKI 594 (770)
Q Consensus 552 ~Rri~RD~~~rG~~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI 594 (770)
..++.||..+||.+.+. .+-.-...+.|..||-|.-...++-+
T Consensus 162 IQK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINF 205 (289)
T COG3954 162 IQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINF 205 (289)
T ss_pred HHHHHhcccccCccHHHHHHHHHHhhhhHHhhcCccccccccce
Confidence 99999999999998775 23333456789999999877777643
No 92
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=98.59 E-value=2.2e-07 Score=92.46 Aligned_cols=114 Identities=18% Similarity=0.280 Sum_probs=102.4
Q ss_pred CCCCeEEEEEeC--ceeeEEeeeeccccCeeeccccceEE--ehhhHHHHHhhhhhhhhheeeeeeEEecCeEEEEEecc
Q 004177 655 TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDI--SISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHL 730 (770)
Q Consensus 655 ~~~~~i~~r~~~--~r~~l~~~~~~~~~~~~~~p~~~f~~--~~~~~~gl~~lgy~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (770)
..+.|||+|..+ |++.+.+..+..++.+..++-.+++| ...+.+.|.+|||.....++.....|.-+++.|.+|++
T Consensus 45 ~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~ 124 (169)
T cd07890 45 ATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAMKEILERLGFGPVGRVKKEREIYLLGQTRVHLDRV 124 (169)
T ss_pred hCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEECCEEEEEEcc
Confidence 457899999998 99999999999888788888888888 36677788899999999999999999999999999999
Q ss_pred ccCCCceEEEecC------CHHHHHHhhhhccccc-ccccchhhcc
Q 004177 731 QDAPSPYLQIKGV------DKEAVAAAGSTLKLDG-SYTTKVMSLA 769 (770)
Q Consensus 731 ~~~~~~~~~~~g~------~~~~v~~~~~~~~~~~-~~~~~~~~~~ 769 (770)
++|+. |+.|-+. .++.+..++.+||+.+ .-+++||.|+
T Consensus 125 ~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 125 EGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred CCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 99977 9999998 8899999999999988 7899999874
No 93
>PRK04182 cytidylate kinase; Provisional
Probab=98.56 E-value=1.1e-07 Score=94.29 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=65.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
+|+|+|++||||||+++.|++.++..++++|++++.... ..+. +...+.+ ... ..|.++......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~-~~g~------~~~~~~~----~~~----~~~~~~~~~~~~ 66 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK-ERGM------SLEEFNK----YAE----EDPEIDKEIDRR 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHH-HcCC------CHHHHHH----Hhh----cCchHHHHHHHH
Confidence 789999999999999999999999998888777654211 0111 0111100 000 001111110000
Q ss_pred CCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..........+|++|.+..+ .+.+..++.||+++|.+.++.|...|+
T Consensus 67 ----~~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 67 ----QLEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred ----HHHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 00111022356778876543 111236899999999999999888775
No 94
>PRK06762 hypothetical protein; Provisional
Probab=98.50 E-value=3.7e-07 Score=89.94 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=68.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L--~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
|.+|+|+|++||||||+|+.|++.+ ++.+++.|.+...-. ...+.++....+++.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~---~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML---RVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc---cccCCCCCcCHHHHHHHHHHH--------------
Confidence 6789999999999999999999998 455677777664211 111233333344333322221
Q ss_pred cCccCCccceeeccCccEEEEEccccch------hhhhhcCC---eEEEEEcChhHHHHHHHHhcc
Q 004177 503 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 503 ~g~r~~~~~~~~~~~~~VVIvEG~~~l~------~~l~~~lD---~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
......+|+|+.+.-. ..+....+ ..+|+++|.++++.|...|..
T Consensus 65 ------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 65 ------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred ------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 1124677888886421 23333333 789999999999999988864
No 95
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.49 E-value=1.2e-07 Score=98.30 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=74.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc--ccCccccccccHHHHHHHHHHHhc------------
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIRN------------ 490 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~--~~n~d~p~t~D~~ll~~~L~~L~~------------ 490 (770)
+++|+|.||+||||||+++.|++.++..+++.+++|+..... ..+.+. .|...+.+.+..+..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDL---TSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCC---CCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 368999999999999999999999999888999888652110 001110 111222222211100
Q ss_pred -------------------CCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHH
Q 004177 491 -------------------GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 551 (770)
Q Consensus 491 -------------------g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL 551 (770)
.....+|.+....-.+. +. .. ...-+|+||.+...- +.+..|+++|++++.+.|.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q--r~--~a-~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ--QA--LA-KNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH--HH--Hh-hcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHH
Confidence 00111222222211111 00 11 123599999986643 2233789999999999999
Q ss_pred HHHHHhccc
Q 004177 552 ISRVQRDKS 560 (770)
Q Consensus 552 ~Rri~RD~~ 560 (770)
.||..|...
T Consensus 153 ~Rr~~~~~~ 161 (217)
T TIGR00017 153 KRRYKQLQI 161 (217)
T ss_pred HHHHHHHhc
Confidence 999888654
No 96
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.47 E-value=2e-07 Score=97.22 Aligned_cols=38 Identities=26% Similarity=0.632 Sum_probs=36.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+.+|+|+|++||||||+++.|++.+|..+++.+++|+.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57999999999999999999999999999999999986
No 97
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.42 E-value=1.1e-07 Score=95.40 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=108.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc---------------------------------cccC-
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------------------------------KDFK- 469 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~---------------------------------~~~n- 469 (770)
...+-+|+||+|+|||||...++..++.. ++..++...+. +.+.
T Consensus 26 ~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY 103 (252)
T COG4604 26 KGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY 103 (252)
T ss_pred CCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc
Confidence 44577899999999999999999987643 33333332111 1111
Q ss_pred -ccccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChh
Q 004177 470 -YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 548 (770)
Q Consensus 470 -~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d 548 (770)
.+-+.+-|.....+.++-|.-...-..=.-..|.|+|+- ..+ +-|+..+--|.+.+++.+.+|++..+
T Consensus 104 SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQR---AfI---AMVlaQdTdyvlLDEPLNNLDmkHsv----- 172 (252)
T COG4604 104 SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQR---AFI---AMVLAQDTDYVLLDEPLNNLDMKHSV----- 172 (252)
T ss_pred cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhh---hhh---heeeeccCcEEEecCcccccchHHHH-----
Confidence 234556666666666665443211111111234455541 111 34666677777777888888876554
Q ss_pred HHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCCh
Q 004177 549 SHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDP 628 (770)
Q Consensus 549 ~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~ 628 (770)
.+...++|-..+-| .+-+++-++-|.++.+.+..+++|.|+.+..|.+...|..
T Consensus 173 -~iMk~Lrrla~el~-------------------------KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 173 -QIMKILRRLADELG-------------------------KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred -HHHHHHHHHHHHhC-------------------------CeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 33333333322222 2557778999999999999999999999999999999998
Q ss_pred hhhhcc
Q 004177 629 AKFCSS 634 (770)
Q Consensus 629 e~v~~f 634 (770)
+..++-
T Consensus 227 ~~L~ei 232 (252)
T COG4604 227 EILSEI 232 (252)
T ss_pred HHHHHH
Confidence 876543
No 98
>PRK03839 putative kinase; Provisional
Probab=98.39 E-value=1.1e-06 Score=87.88 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=64.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
.|.|+|++||||||+++.|++.++.+++++|+++........ ++..+...+..+...+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~------------------ 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEE-KDDEMEIDFDKLAYFIEEE------------------ 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCccc-CChhhhcCHHHHHHHHHHh------------------
Confidence 578899999999999999999999999999998864322211 1112222233333322210
Q ss_pred CCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
.. ...+|++|.+... ...|..++++++.+....|...|.
T Consensus 63 --------~~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 --------FK-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred --------cc-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 00 1236778855422 136889999999999887766553
No 99
>PRK04040 adenylate kinase; Provisional
Probab=98.35 E-value=1.3e-06 Score=88.58 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=34.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L--~~~vis~Ddfy~~ 462 (770)
|.+|+|+|++||||||+++.|++.+ +..+++.+++++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence 6789999999999999999999999 7888888888764
No 100
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.32 E-value=1.1e-06 Score=87.52 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
..++.+|.+.|++||||||+++.|+..+. ..++++|.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 34678999999999999999999999885 445555554
No 101
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.31 E-value=1e-06 Score=86.65 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.+..|.|+|++||||||+++.|++.++..+++.|++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 46688899999999999999999999999999998764
No 102
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.28 E-value=2.3e-06 Score=85.45 Aligned_cols=117 Identities=14% Similarity=0.177 Sum_probs=67.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
+|.|.||+||||||+|+.|++.+++.++|+++..+..-... ...+ ..+.+. +..|..+.--....-...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~---~~~~----~~~~~~---~~~g~~~~~~~~~~ll~~- 69 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSG---SENG----ELIESM---IKNGKIVPSEVTVKLLKN- 69 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcC---ChHH----HHHHHH---HHCCCcCCHHHHHHHHHH-
Confidence 47789999999999999999999999999988876431100 0000 011111 222332211010000000
Q ss_pred CCccceeeccCccEEEEEccccch---h---hhh---hcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH---P---EIR---KSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~---~---~l~---~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.+... +.+-+|+||..--. . .+. ...|..++++++.+..+.|...|..
T Consensus 70 ----~~~~~-~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 70 ----AIQAD-GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred ----HHhcc-CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 00001 14568999964321 1 111 1468899999999999999888764
No 103
>PRK08356 hypothetical protein; Provisional
Probab=98.23 E-value=1.8e-06 Score=87.74 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=32.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+.++|+|+||+||||||+|+.|++ .+..++|+.+.++.
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~ 41 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLID 41 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccc
Confidence 456899999999999999999975 78889998887653
No 104
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.22 E-value=1.8e-06 Score=73.22 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=21.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 105
>PRK13949 shikimate kinase; Provisional
Probab=98.22 E-value=2.9e-06 Score=84.58 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
-|.|+|++||||||+++.|++.++..++++|.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~ 37 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIE 37 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHH
Confidence 47789999999999999999999999999998764
No 106
>PRK00625 shikimate kinase; Provisional
Probab=98.22 E-value=3e-06 Score=84.86 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|.++|.+||||||+++.|++.++.+++++|.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHH
Confidence 477899999999999999999999999999987653
No 107
>PLN02200 adenylate kinase family protein
Probab=98.20 E-value=2.4e-06 Score=89.71 Aligned_cols=120 Identities=16% Similarity=0.212 Sum_probs=72.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
..|.+|.|.|++||||||+|+.|++.+|...+++++..+.+-.. + +.+...+ ...+..|+.+.-......
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~----~---s~~~~~i---~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS----N---SEHGAMI---LNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc----c---ChhHHHH---HHHHHcCCCCcHHHHHHH
Confidence 46789999999999999999999999999999998888743111 0 1111111 222334443321111000
Q ss_pred cCccCCccceeeccCccEEEEEccccchh------hh-hhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 503 TGARSGFKELEVSEDCGVIIFEGVYALHP------EI-RKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 503 ~g~r~~~~~~~~~~~~~VVIvEG~~~l~~------~l-~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
...+ +.. ....-+|+||..--.. .+ ....|..++++++.++.+.|...|.
T Consensus 111 l~~~-----l~~-~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 111 IQKE-----MES-SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred HHHH-----Hhc-CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCc
Confidence 0000 000 1134589999543221 11 1247899999999999999888775
No 108
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.19 E-value=2.9e-06 Score=102.56 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=80.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc----ccCccccccccHHHHHHHHHHHhcCCCccc-----
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK----DFKYDDFSSLDLSLLSKNISDIRNGRRTKV----- 496 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~----~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~----- 496 (770)
.+|+|.||+||||||+++.|++.+|...++...+|+..... ..+.++ .-.|.+.+.+.+..+..+-.+.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDA-ELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcch-hhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 47999999999999999999999999999999999874321 111111 11334455555554433211111
Q ss_pred ------------------------------cccccccCccCCccceeeccC-------ccEEEEEccccchhhhhhcCCe
Q 004177 497 ------------------------------PIFDLETGARSGFKELEVSED-------CGVIIFEGVYALHPEIRKSLDL 539 (770)
Q Consensus 497 ------------------------------P~yD~s~g~r~~~~~~~~~~~-------~~VVIvEG~~~l~~~l~~~lD~ 539 (770)
|........++ +......+ ..-+|+||--++.- +.+..|+
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~q--r~~~~~~~~~~~~~~~~~~v~eGRdigtv-v~p~a~~ 157 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ--RAYIAREASADSFSGGLGIVAEGRDITTV-VAPDAEV 157 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHH--HHHHhhcCccccccccCcEEEecCccceE-EecCCCe
Confidence 00000000000 00000011 12599999998762 2233699
Q ss_pred EEEEEcChhHHHHHHHHhccc
Q 004177 540 WIAVVGGVHSHLISRVQRDKS 560 (770)
Q Consensus 540 ~I~Vd~~~d~rL~Rri~RD~~ 560 (770)
++|++++.+.|..||..++..
T Consensus 158 K~~l~A~~~~Ra~Rr~~~~~~ 178 (712)
T PRK09518 158 RILLTAREEVRQARRSGQDRS 178 (712)
T ss_pred EEEEECCHHHHHHHHHHhhhc
Confidence 999999999999999988753
No 109
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=8e-07 Score=93.51 Aligned_cols=167 Identities=14% Similarity=0.184 Sum_probs=101.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce----------------eccccccccCc-----------------
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY----------------FKSEQVKDFKY----------------- 470 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf----------------y~~~~~~~~n~----------------- 470 (770)
+.-+++|.||||||||||.+.+...+.+. ++... |.+.. ..+++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~~g~~~~~~~~~~~IgYVPQ~-~~~d~~fP~tV~d~V~~g~~~~ 105 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPS--SGEIKIFGKPVRKRRKRLRIGYVPQK-SSVDRSFPITVKDVVLLGRYGK 105 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCC--cceEEEccccccccccCCeEEEcCcc-cccCCCCCcCHHHHHHccCccc
Confidence 34699999999999999999999977543 22222 11111 11221
Q ss_pred ----cccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcC
Q 004177 471 ----DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGG 546 (770)
Q Consensus 471 ----d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~ 546 (770)
..+.+.|.+.+.+.|+.+.-..-...+....|.|+++ .+.+ ++.++-++-+++.+|+...+|. .
T Consensus 106 ~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q---RV~l---ARAL~~~p~lllLDEP~~gvD~------~ 173 (254)
T COG1121 106 KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ---RVLL---ARALAQNPDLLLLDEPFTGVDV------A 173 (254)
T ss_pred ccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH---HHHH---HHHhccCCCEEEecCCcccCCH------H
Confidence 2345566777788888777666677788888888654 2221 2333344444444444444442 2
Q ss_pred hhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCC
Q 004177 547 VHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 626 (770)
Q Consensus 547 ~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~m 626 (770)
....+.+.+.+-..+ | .+-+++.++.+......+....++. +.+..+.+...+
T Consensus 174 ~~~~i~~lL~~l~~e-g-------------------------~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 174 GQKEIYDLLKELRQE-G-------------------------KTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHHHHHHHHHC-C-------------------------CEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 222333333322222 2 2557888888888888888777774 467778888888
Q ss_pred Chhhhh
Q 004177 627 DPAKFC 632 (770)
Q Consensus 627 t~e~v~ 632 (770)
+.+.+.
T Consensus 227 ~~~~l~ 232 (254)
T COG1121 227 TEENLE 232 (254)
T ss_pred CHHHHH
Confidence 877663
No 110
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.15 E-value=1.2e-06 Score=81.53 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=59.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecccc----ccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~----~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
|+|+|++||||||+++.|++.++.. ..|.++.... ............+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDI--IRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR---------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHH--HHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcH--HHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence 7899999999999999999987322 2222221110 00011122233444444444433322100
Q ss_pred CccCCccceeeccCccEEEEEccccchhhhhhcCCeE-EEEEcChhHHHHHHHHhccc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKS 560 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~-I~Vd~~~d~rL~Rri~RD~~ 560 (770)
.......+|+||++.... .....+.. |+++++.+++..|...|...
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 123356789999887542 11122222 99999999988888877543
No 111
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.5e-07 Score=93.47 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=94.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccccc-------------------C---------------
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF-------------------K--------------- 469 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~-------------------n--------------- 469 (770)
+--+|+|.|+||||||||.++|.....+. ++..++.+.+.... |
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~d~t--~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~gr 106 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLVDPT--SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR 106 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCCC--cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhh
Confidence 34589999999999999999999976655 55555555321110 0
Q ss_pred ----------ccccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCe
Q 004177 470 ----------YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDL 539 (770)
Q Consensus 470 ----------~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~ 539 (770)
|+-+...|.....+.|+.+...+....+.-..|.|+.+ .+.+ +++++.+.-+++.+++...+|.
T Consensus 107 l~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQ---RVaI---ARaL~Q~pkiILADEPvasLDp 180 (258)
T COG3638 107 LGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQ---RVAI---ARALVQQPKIILADEPVASLDP 180 (258)
T ss_pred cccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhH---HHHH---HHHHhcCCCEEecCCcccccCh
Confidence 11122333344444444433333333333334444322 1111 3455555555566666666652
Q ss_pred EEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccch
Q 004177 540 WIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAY 619 (770)
Q Consensus 540 ~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~ 619 (770)
. ....+...+++-..+.| -+-++--|..+.+.++.++++.++.|+++.+
T Consensus 181 ~------~a~~Vm~~l~~in~~~g-------------------------~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 181 E------SAKKVMDILKDINQEDG-------------------------ITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred h------hHHHHHHHHHHHHHHcC-------------------------CEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 1 11122222222111111 1334445778888899999999999999999
Q ss_pred hhhccCCChhhhh
Q 004177 620 QDILKILDPAKFC 632 (770)
Q Consensus 620 ~~~~~~mt~e~v~ 632 (770)
+.+.. ++++.+.
T Consensus 230 g~~~e-l~~~~~~ 241 (258)
T COG3638 230 GPASE-LTDEALD 241 (258)
T ss_pred CChhh-hhHHHHH
Confidence 88888 7776654
No 112
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.12 E-value=6.1e-06 Score=92.19 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=81.8
Q ss_pred CcccccHHHHHHHHHHH----hCCCCccccccccccCc----ccCC--eEEEcCCCcEEEEEecccch-H----------
Q 004177 13 DLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGS--KVIKGASSGVVIVDGTYALD-A---------- 71 (770)
Q Consensus 13 ~Pda~D~~~l~~~L~~L----k~g~~i~~P~YD~~~~~----r~~~--~~~~~~~~~VVIVEGi~~l~-~---------- 71 (770)
.|.++|+.++.+.|.+| ++|++|.+|.||+..+. |.+. ......|.+|||+||++++. +
T Consensus 276 ~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D 355 (460)
T PLN03046 276 NAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVD 355 (460)
T ss_pred CCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccC
Confidence 47899999999999888 57899999999999965 5432 13446889999999998877 1
Q ss_pred ---------------HhhhcCCeEEEEecCc-hhHHHHHhhhccccC------CCHHHHHH---HHHHhhhccccc
Q 004177 72 ---------------RLRSLLDIRVAVVGGV-HFSLISKVQYDIGDS------CSLDSLID---SIFPLFRKHIEP 122 (770)
Q Consensus 72 ---------------~l~~l~DlkIfVd~d~-d~rl~RRi~RD~~er------~s~e~v~~---~v~p~~~~yI~P 122 (770)
.+..++|.-|.+.++. +.-+.||++.+.+-| ++.+++.+ +++|.|+.|..-
T Consensus 356 ~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmPaY~~y~~~ 431 (460)
T PLN03046 356 PQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLPAYKAYLPT 431 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHH
Confidence 1222467778888765 888888887766442 56677665 458999887653
No 113
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.12 E-value=9.5e-06 Score=78.37 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.2
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
|.|+|++||||||+++.|++.++...++.|.+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence 6789999999999999999999999999998865
No 114
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.12 E-value=1e-05 Score=81.93 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=78.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc--ccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ--VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~--~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
++++|.|+||||||||||++.|.+.......+. -+-++. .++.+-.+..-.+. .+....+..|+-++.-.|.-
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v--~~TTR~~r~gE~~G~dY~fvs~---~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSI--SCTTRAPRPGDEEGKTYFFLTI---EEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcccccc--CccCCCCCCCCCCCceeEeCCH---HHHHHHHHcCCeEEEEEECC
Confidence 578899999999999999999988653111111 111111 11111001000111 22233445666665544432
Q ss_pred cc-CccCCccce-eeccCccEEEEEccccchhhhhhcCC---eEEEEEcCh-hHHHHHHHHhcccccCcCcc-hhhHHhh
Q 004177 502 ET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMS-QNDIMMT 574 (770)
Q Consensus 502 s~-g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~lD---~~I~Vd~~~-d~rL~Rri~RD~~~rG~~l~-~~q~~~~ 574 (770)
.. |... +.+ .......++|++.-.-+...++..+. ..||+.+|. +....|+..|+.. +.+ ..+.+..
T Consensus 78 ~~YGt~~--~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~e~i~~Rl~~ 151 (186)
T PRK14737 78 NYYGTPK--AFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SEESIEKRIEN 151 (186)
T ss_pred eeecCcH--HHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHHHHHHHH
Confidence 21 2111 111 12344678888865555445555443 688998875 5555555555321 111 1222222
Q ss_pred ccchhhhccccccCcccEEEcCC
Q 004177 575 VFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 575 v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
..+ .. .....+|.+|.|+
T Consensus 152 ~~~-e~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 152 GII-EL----DEANEFDYKIIND 169 (186)
T ss_pred HHH-HH----hhhccCCEEEECc
Confidence 111 11 1245699999997
No 115
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=9.9e-07 Score=89.63 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=40.3
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhc
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCS 633 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~ 633 (770)
+-++|-+|.|.+..+.++++.++.|+.++.+.++.++|+|-+..
T Consensus 193 ~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~ 236 (259)
T COG4559 193 AVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLER 236 (259)
T ss_pred cEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHH
Confidence 56788999999999999999999999999999999999997753
No 116
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.10 E-value=1e-05 Score=80.88 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=66.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHH-hcCCCccccccccc-
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDI-RNGRRTKVPIFDLE- 502 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L-~~g~~v~~P~yD~s- 502 (770)
..+|+|.||+||||||+++.|++.+|...++++++.+..... +.+ ..+.+..+ ..|.. .|.-...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~-------~~~~~~~~~~~~~~--~~~~~~~~ 69 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE-------RGKQLQAIMESGDL--VPLDTVLD 69 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH-------HHHHHHHHHHCCCC--CCHHHHHH
Confidence 458889999999999999999999999988988876542100 000 00111111 11211 1110000
Q ss_pred -cCccCCccceeeccCccEEEEEccccch---hhh---hhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 503 -TGARSGFKELEVSEDCGVIIFEGVYALH---PEI---RKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 503 -~g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~l---~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..++. .........+|+||..--. ..+ ....|..++++++.+..+.|...|.
T Consensus 70 ~l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 70 LLKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred HHHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00000 0001234678889964321 111 1346899999999999888887775
No 117
>PRK14527 adenylate kinase; Provisional
Probab=98.04 E-value=1.3e-05 Score=81.08 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=69.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHH-HhcCCCcccccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 501 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~ 501 (770)
..+.+|.|.||+||||||+++.|++.++...++.|+..+..-... . .+.+.+.. +..|..+.-.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~----~-------~~~~~~~~~~~~g~~~p~~~~~~ 72 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARG----T-------ELGQRAKPIMEAGDLVPDELILA 72 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcC----c-------HHHHHHHHHHHcCCCCcHHHHHH
Confidence 457789999999999999999999999999999988876431110 0 00111111 22222211100000
Q ss_pred ccCccCCccceeeccCccEEEEEccccchh------hhh----hcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYALHP------EIR----KSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~------~l~----~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
...++ +. ..+..-+|+||..--.. .+. ..++..++++++.++.+.|...|..
T Consensus 73 l~~~~-----l~-~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 73 LIRDE-----LA-GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred HHHHH-----Hh-cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 00000 00 00123488898543211 111 2367789999999999999888753
No 118
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=7.3e-06 Score=83.78 Aligned_cols=135 Identities=18% Similarity=0.247 Sum_probs=77.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHh-----------cCCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIR-----------NGRR 493 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~-----------~g~~ 493 (770)
.++|+|.||+||||||+|+.|+..||...++...+|+.-...... ....-.|.+.+...+..+. +|+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~-~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALK-HGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHH-cCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 389999999999999999999999999999988888863211100 0111123333343333221 1111
Q ss_pred ccccccccccCcc------CCc-c------ceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhccc
Q 004177 494 TKVPIFDLETGAR------SGF-K------ELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 560 (770)
Q Consensus 494 v~~P~yD~s~g~r------~~~-~------~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~ 560 (770)
+.-..-....+.. .+. + .........-+|+||-=.+. .+.+..++++|+++++++|-.||......
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 1000000000000 000 0 00011122458899987764 23445789999999999999999876544
Q ss_pred c
Q 004177 561 R 561 (770)
Q Consensus 561 ~ 561 (770)
.
T Consensus 162 ~ 162 (222)
T COG0283 162 K 162 (222)
T ss_pred c
Confidence 3
No 119
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.03 E-value=5.2e-06 Score=99.58 Aligned_cols=129 Identities=13% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhc----------CCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN----------GRR 493 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~----------g~~ 493 (770)
+..+|.|.||+||||||+++.|++.++..+++.+.+|+.-....... ...-.|.+.+.+.+..+.. |+.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRA-GVALDDEAAIAALARGLPVRFEGDRIWLGGED 519 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHc-CcCCCCHHHHHHHHhcCCeeecCCeEEECCeE
Confidence 35689999999999999999999999999999999998742111000 0111233444444333211 100
Q ss_pred c-----------------cccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHH
Q 004177 494 T-----------------KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQ 556 (770)
Q Consensus 494 v-----------------~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~ 556 (770)
+ ..|.++...-.++ .... ...-+|+||--.+.- +.+..|+++|++++.+.|-.||..
T Consensus 520 ~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q----r~~~-~~~~~v~eGRdigtv-v~p~a~~kifl~a~~~~Ra~Rr~~ 593 (661)
T PRK11860 520 VTDAIRTEAAGMGASRVSALPAVRAALLALQ----RSFR-RLPGLVADGRDMGTV-IFPDAALKVFLTASAEARAERRYK 593 (661)
T ss_pred chhhhCcHHHHHHHHHHhCCHHHHHHHHHHH----HHHh-hCCCEEEECCCCccE-ECCCCCeEEEEECChhHHHHHHHH
Confidence 0 1111111111111 0011 123489999888752 223489999999999999999987
Q ss_pred hcc
Q 004177 557 RDK 559 (770)
Q Consensus 557 RD~ 559 (770)
...
T Consensus 594 ~~~ 596 (661)
T PRK11860 594 QLI 596 (661)
T ss_pred HHH
Confidence 543
No 120
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.02 E-value=1.2e-05 Score=87.83 Aligned_cols=40 Identities=23% Similarity=0.344 Sum_probs=34.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.++...|+++|++||||||+++.|++.+|..++++|....
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 3456789999999999999999999999999888886543
No 121
>PRK08233 hypothetical protein; Provisional
Probab=98.01 E-value=1.9e-05 Score=78.43 Aligned_cols=99 Identities=14% Similarity=0.332 Sum_probs=75.6
Q ss_pred CcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCchhHH
Q 004177 13 DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSL 91 (770)
Q Consensus 13 ~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~rl 91 (770)
..++++++.+.+.|..+.++.. .++||+||.+... +++++.+|+.||+++|.++++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~ 112 (182)
T PRK08233 56 NYSEWVLTPLIKDIQELIAKSN-----------------------VDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAM 112 (182)
T ss_pred ChhhhhhHHHHHHHHHHHcCCC-----------------------ceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHH
Confidence 4467888888888888765421 2578999988766 789999999999999999999
Q ss_pred HHHhhhccccC--CCHHH----HHHHHHHhhhccccccCCcccEEEeCC
Q 004177 92 ISKVQYDIGDS--CSLDS----LIDSIFPLFRKHIEPDLHHAQIRINNR 134 (770)
Q Consensus 92 ~RRi~RD~~er--~s~e~----v~~~v~p~~~~yI~P~k~~ADiVI~~~ 134 (770)
.|++.|+.... .+..+ ...+.+|.|..++++....|+++|++.
T Consensus 113 ~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 113 ARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCC
Confidence 99999986432 12222 223358999999998888899999754
No 122
>PRK14530 adenylate kinase; Provisional
Probab=98.00 E-value=1.1e-05 Score=83.24 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=66.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
.|.|.||+||||||+++.|++.++...++++++.+.......+ +.++. .....+ .+..|..+.-.........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~~-~~~~~~---~~~~g~~~~d~~~~~~l~~- 77 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDTE-YDTPGE---YMDAGELVPDAVVNEIVEE- 77 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccch-HHHHHH---HHHcCCCCCHHHHHHHHHH-
Confidence 5788999999999999999999999999999988753211100 00000 000111 1222322111000000000
Q ss_pred CCccceeeccCccEEEEEccccch---hhhh--hcCCeEEEEEcChhHHHHHHHHhc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~---~~l~--~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
. ....+-+|++|...-. ..+. ...|..|+++++.+..+.|...|.
T Consensus 78 ----~---l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 78 ----A---LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred ----H---HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 0 0112457888843322 1221 237899999999998887776664
No 123
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.99 E-value=1.1e-05 Score=80.96 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=66.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCccC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 507 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~ 507 (770)
|.|.||+||||||+++.|++.++..++++|+..+...... +.....+.+. +..|..+.-.........+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~- 70 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKER- 70 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHH-
Confidence 6789999999999999999999999999999876431110 0000111111 1122221100000000000
Q ss_pred CccceeeccCccEEEEEccccch------hhhhh---cCCeEEEEEcChhHHHHHHHHhcc
Q 004177 508 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 508 ~~~~~~~~~~~~VVIvEG~~~l~------~~l~~---~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
+......+-+|++|.-.-. .+... ..+..|+++++.++.+.|...|..
T Consensus 71 ----l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 71 ----LKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred ----HhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 0000023457888854321 12222 578999999999999999888764
No 124
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.98 E-value=3.1e-05 Score=77.38 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+..|.|.|++||||||+++.|++.++..+++.|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHH
Confidence 3458889999999999999999999999888887543
No 125
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.96 E-value=3.7e-05 Score=76.56 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+|+|.||+||||||+++.|+..++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 37889999999999999999997653
No 126
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.95 E-value=6.5e-05 Score=72.61 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=32.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|.++|++||||||+++.|++.++..+++.|.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 467899999999999999999999999999998764
No 127
>PRK14528 adenylate kinase; Provisional
Probab=97.94 E-value=3.3e-05 Score=78.17 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=68.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
.|.|.||+||||||+++.|++.++.+++++++..+..-... . ++-.+.-..+..|+.+.-........++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~----~------~~g~~~~~~~~~g~lvp~~~~~~~~~~~ 72 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ----T------AMGIEAKRYMDAGDLVPDSVVIGIIKDR 72 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC----C------HHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 46789999999999999999999999999999876521110 0 0000111112233322111110001111
Q ss_pred CCccceeeccCccEEEEEccccch------hhhh----hcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH------PEIR----KSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~------~~l~----~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
. .......-+|+||.---. .++. ...|..|+++++.+..+.|...|..
T Consensus 73 l-----~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 73 I-----READCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred H-----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 1 001123568899953211 1111 2489999999999999988887754
No 128
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.91 E-value=2.2e-05 Score=77.65 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=31.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|.|+|++||||||+++.|++.+|.++++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 466789999999999999999999999999887643
No 129
>PRK12338 hypothetical protein; Provisional
Probab=97.90 E-value=4.9e-05 Score=82.86 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=34.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|.+|.|+|++||||||+|+.|+..+|...+..+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence 589999999999999999999999999887766666654
No 130
>PLN02796 D-glycerate 3-kinase
Probab=97.89 E-value=3.2e-05 Score=85.01 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred CcccccHHHHHHHHHHHh----CCCCccccccccccCc----ccCC--eEEEcCCCcEEEEEecccch------------
Q 004177 13 DLDSIDFDALVQNLQDLT----EGKDTLIPMFDYQQKN----RIGS--KVIKGASSGVVIVDGTYALD------------ 70 (770)
Q Consensus 13 ~Pda~D~~~l~~~L~~Lk----~g~~i~~P~YD~~~~~----r~~~--~~~~~~~~~VVIVEGi~~l~------------ 70 (770)
.|.++|++++.++|.+|+ +|+++.+|.||+..+. |.+. ......+.+|||+||+++-.
T Consensus 164 ~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~ 243 (347)
T PLN02796 164 NAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVD 243 (347)
T ss_pred CCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccC
Confidence 477999999999999998 6789999999999965 5432 12345789999999999765
Q ss_pred --------------HHhhhcCCeEEEEecC-chhHHHHHhhhcc------ccCCCHHHHHHH---HHHhhhccc
Q 004177 71 --------------ARLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDSCSLDSLIDS---IFPLFRKHI 120 (770)
Q Consensus 71 --------------~~l~~l~DlkIfVd~d-~d~rl~RRi~RD~------~er~s~e~v~~~---v~p~~~~yI 120 (770)
+.+..++|.-|.+.++ .+.-+.||+.-.. ...++.+++.+. ++|.|+.|.
T Consensus 244 ~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 244 PQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1233467888898876 4555556544322 112677777664 578888873
No 131
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.88 E-value=1.1e-05 Score=76.84 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=32.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|.++|++|||||||++.|+..++..+++.|.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 567899999999999999999999889999998763
No 132
>PRK02496 adk adenylate kinase; Provisional
Probab=97.88 E-value=3.6e-05 Score=77.28 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=32.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
..|.|.||+||||||+++.|++.++..+++.++..+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 3477899999999999999999999998998887754
No 133
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.87 E-value=1.9e-05 Score=80.49 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=45.3
Q ss_pred cCCeEEEEEcChhHHHHHHHHhcccccCcCcch------hhHHhhccchhhhccccccCcccEEEcC-CCCCCCCccc
Q 004177 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRN-DFDPVLSPES 606 (770)
Q Consensus 536 ~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n-~~~~~l~~e~ 606 (770)
.-|+.|+++++.++-+.|..+ ||++.+. .+|+......|..|++-....-++.|+. .++.....++
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~-----RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d 198 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAK-----RGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQD 198 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHH-----hCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHH
Confidence 568999999999986666554 4565552 3577778888888887776666777764 3554444443
No 134
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.86 E-value=3.4e-05 Score=75.73 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.|+||+||||||+++.|+..++..+++.|+++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~ 35 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPA 35 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccCh
Confidence 46789999999999999999999999999998643
No 135
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.84 E-value=1.8e-06 Score=94.99 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=95.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccc-------cC--------cccc-------------c---
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKD-------FK--------YDDF-------------S--- 474 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~-------~n--------~d~p-------------~--- 474 (770)
-++.+.|||||||||+.+.||....+. ++..++.+++... .+ |.|. .
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 578899999999999999999976554 4444444322111 10 1110 0
Q ss_pred -cccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHH
Q 004177 475 -SLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLIS 553 (770)
Q Consensus 475 -t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~R 553 (770)
+---..+.+.++.+.-........-..|.|+++ .+.. ++.++.|.-.++.+++.+.+|. .+..
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQ---RVAL---ARAL~~~P~vLLLDEPlSaLD~----------kLR~ 173 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRKPHQLSGGQQQ---RVAL---ARALVPEPKVLLLDEPLSALDA----------KLRE 173 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhChhhhChHHHH---HHHH---HHHhhcCcchhhhcCcccchhH----------HHHH
Confidence 000112222222222221111111122333322 1111 5677777777777777777763 3333
Q ss_pred HHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhc
Q 004177 554 RVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCS 633 (770)
Q Consensus 554 ri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~ 633 (770)
.+++...+.-+ .....-+.+.|+-.-++.-.+++.+++.|++...+.+...+. .-...
T Consensus 174 ~mr~Elk~lq~---------------------~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~-~P~~~ 231 (352)
T COG3842 174 QMRKELKELQR---------------------ELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE-RPATR 231 (352)
T ss_pred HHHHHHHHHHH---------------------hcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh-CcchH
Confidence 33333222111 011234667788888888888999999998887777777653 23456
Q ss_pred cccccceee
Q 004177 634 SAQNFIDMY 642 (770)
Q Consensus 634 fv~~y~~~Y 642 (770)
||..|+---
T Consensus 232 fVA~FiG~~ 240 (352)
T COG3842 232 FVADFIGES 240 (352)
T ss_pred HHHHHhCcc
Confidence 777666544
No 136
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.84 E-value=4.5e-05 Score=78.44 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=66.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHH-HHhcCCCccccccccccCcc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIS-DIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~-~L~~g~~v~~P~yD~s~g~r 506 (770)
|.|.||+||||||+|+.|++.+|+.+||+++..+..-... .+ +.+.+. .+..|..+.-........++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999998886421100 00 011111 12233322111111100111
Q ss_pred CCccceeeccCccEEEEEccccch---hhh---hh-cCCeEEEEEcChhHHHHHHHHhc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH---PEI---RK-SLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~---~~l---~~-~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
.. ......+-+|+||.---. ..+ .. ..|..|+++++.+..+.|...|-
T Consensus 71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 00 001113568999953322 112 22 46899999999999888887763
No 137
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=7e-06 Score=86.14 Aligned_cols=167 Identities=20% Similarity=0.188 Sum_probs=92.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc--cccccceecc--------cc-c----------------------cccCcc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS--------EQ-V----------------------KDFKYD 471 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~--vis~Ddfy~~--------~~-~----------------------~~~n~d 471 (770)
--.++|.|++|||||||++.|+..+.+. .+-.|+.... .+ . +..|.+
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 3478899999999999999999988644 1111111100 00 0 000111
Q ss_pred ccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHH
Q 004177 472 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 551 (770)
Q Consensus 472 ~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL 551 (770)
.+..--...+.+.+...........|.+..|.|+.. .+.+ +.+++.+.-+++.+++...+|.. .-..+
T Consensus 110 ~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq---RvaI---A~vLa~~P~iliLDEPta~LD~~------~~~~l 177 (235)
T COG1122 110 LPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQ---RVAI---AGVLAMGPEILLLDEPTAGLDPK------GRREL 177 (235)
T ss_pred CCHHHHHHHHHHHHHHcCchhhccCCccccCCccee---eHHh---hHHHHcCCCEEEEcCCCCCCCHH------HHHHH
Confidence 122111233444555555555567788888887543 2222 33444444444445555555521 01111
Q ss_pred HHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhccCCCh
Q 004177 552 ISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDP 628 (770)
Q Consensus 552 ~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~ 628 (770)
.+.+..-.. ....+-+++.|+.++.....++.+.++.|+.+..+++.+.+.+
T Consensus 178 ~~~l~~L~~-------------------------~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 178 LELLKKLKE-------------------------EGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHHHHHh-------------------------cCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 111111100 1112557889999999999999999999988888877665544
No 138
>PRK14532 adenylate kinase; Provisional
Probab=97.82 E-value=5.4e-05 Score=76.15 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=32.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.|.||+||||||+++.|++.+|..++|.|+..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~ 37 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRA 37 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHH
Confidence 56799999999999999999999999999988875
No 139
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.81 E-value=5.6e-05 Score=78.00 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|.|.||+||||||+++.|++.++..++|+++..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 477899999999999999999999999999888764
No 140
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=3.4e-06 Score=89.03 Aligned_cols=103 Identities=16% Similarity=0.231 Sum_probs=63.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccc--cc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF--DL 501 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y--D~ 501 (770)
+--++||.|.|||||||+++.|.....+. ++..+|.+.+...++ ...-.+.+.+.|......+ -..-.| .+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f~g~~i~~~~----~~~~~~~v~elL~~Vgl~~-~~~~ryPhel 110 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILFEGKDITKLS----KEERRERVLELLEKVGLPE-EFLYRYPHEL 110 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEEcCcchhhcc----hhHHHHHHHHHHHHhCCCH-HHhhcCCccc
Confidence 45689999999999999999999988887 888888877654443 1111223444444433211 122333 44
Q ss_pred ccCccCCccceeeccCccEEEEEccccchhhhhhcCCe
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDL 539 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~ 539 (770)
|.|+|+ .+.+ ++.++++.-+...+++.+++|.
T Consensus 111 SGGQrQ---Ri~I---ARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 111 SGGQRQ---RIGI---ARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred Cchhhh---hHHH---HHHHhhCCcEEEecCchhhcch
Confidence 556665 2222 4555566656666677777764
No 141
>PRK13946 shikimate kinase; Provisional
Probab=97.79 E-value=6.1e-05 Score=75.95 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
.+..|.++|++||||||+++.|++.||..+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~ 45 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI 45 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence 3457889999999999999999999999999988643
No 142
>PRK14531 adenylate kinase; Provisional
Probab=97.79 E-value=7.9e-05 Score=75.02 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 463 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~ 463 (770)
.|.|.||+||||||+++.|++.+|...+|+++..+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 5778999999999999999999999999998888753
No 143
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.78 E-value=4.9e-05 Score=79.57 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=70.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
..|+.|.|.||+||||||+|+.|++.+++.++|+|+.++.+.... ...+ ..+.+ .+..|..+.-......
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~lg----~~i~~---~~~~G~lvpd~iv~~l 73 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TTIG----KEIQK---VVTSGNLVPDNLVIAI 73 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---ChHH----HHHHH---HHHcCCcCCHHHHHHH
Confidence 346668899999999999999999999999999999997542110 0000 11111 1222322111110000
Q ss_pred cCccCCccceeeccCccEEEEEccccchh---hhh--hcCCeEEEEEcChhHHHHHHHHhc
Q 004177 503 TGARSGFKELEVSEDCGVIIFEGVYALHP---EIR--KSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 503 ~g~r~~~~~~~~~~~~~VVIvEG~~~l~~---~l~--~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
...+.. .. .......+|++|.---.. .+. ...|..++++.+.++.+.|...|.
T Consensus 74 v~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 74 VKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 000000 00 011245689999532111 111 246888999999999888877764
No 144
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.77 E-value=4.3e-06 Score=94.34 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=33.5
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhc
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCS 633 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~ 633 (770)
+-+++.|+.+...+..++++.++.|+.+..+.+...++.+.+.+
T Consensus 191 TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~ 234 (402)
T PRK09536 191 TAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234 (402)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHH
Confidence 44666788877777888888999998888888877777665543
No 145
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.77 E-value=2.3e-06 Score=93.77 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=29.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ 464 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~ 464 (770)
-++.+.|||||||||+.+.||.+..+. +++.++.+++
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i~g~~ 66 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILIDGRD 66 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEE
Confidence 467789999999999999999987665 6666665543
No 146
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=2.7e-06 Score=88.30 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=39.0
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhh
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFC 632 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~ 632 (770)
+-++|+|+-+.....+++++++..|+.++.|.+..+.++..|.
T Consensus 202 tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~Vi 244 (250)
T COG0411 202 TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPRVI 244 (250)
T ss_pred EEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHHhH
Confidence 4578999999999999999999999999999999999988873
No 147
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.73 E-value=3.1e-05 Score=76.36 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=51.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccC-----------------c-----c--------ccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK-----------------Y-----D--------DFS 474 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n-----------------~-----d--------~p~ 474 (770)
--.|+|+||||||||||.+.++....+. |+.-+|.+++...+. | | .-.
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r 106 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR 106 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHHhcc
Confidence 3478899999999999999999987665 566666654322111 0 0 123
Q ss_pred cccHHHHHHHHHHHhcCCC-ccccccccccCccC
Q 004177 475 SLDLSLLSKNISDIRNGRR-TKVPIFDLETGARS 507 (770)
Q Consensus 475 t~D~~ll~~~L~~L~~g~~-v~~P~yD~s~g~r~ 507 (770)
..|.+...+.|.....+.. ...++-+.|.|.++
T Consensus 107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Q 140 (223)
T COG4619 107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQ 140 (223)
T ss_pred CCChHHHHHHHHHcCCchhhhcchhhhccchHHH
Confidence 4566777777766554443 34566667776554
No 148
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.71 E-value=0.00022 Score=72.62 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
...+|+|.||||||||||++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456889999999999999999999765
No 149
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.70 E-value=0.00013 Score=74.74 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=31.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.+.+|.|+|++||||||+++.|+..++..++...|+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467999999999999999999999998765555554443
No 150
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.68 E-value=0.00015 Score=72.24 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+|.|+|||||||||+++.|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6789999999999999999998753
No 151
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.68 E-value=6.8e-05 Score=75.61 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=26.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 458 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd 458 (770)
.+|+|+||||||||||++.|+..+++.++..|.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~ 35 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHR 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCE
Confidence 368899999999999999999987765444443
No 152
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=97.66 E-value=0.00015 Score=72.70 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=96.9
Q ss_pred cceeeecCCCCCCCCCCCCCCeEEEEEe-CceeeEEeeeeccccCeeeccccceEEe-----------hhhHHHHHhhhh
Q 004177 638 FIDMYLRLPGIPTNGQLTESDCIRVRIC-EGRFALLIREPLREGNFIIQPKVDFDIS-----------ISTVAGLLNLGY 705 (770)
Q Consensus 638 y~~~Yl~~~~~~~~~~~~~~~~i~~r~~-~~r~~l~~~~~~~~~~~~~~p~~~f~~~-----------~~~~~gl~~lgy 705 (770)
+.+.|+-.|+... ...+.|||+|.. +++..+.+..+..+++ ++.++|+++ -.+.--|-++|+
T Consensus 35 ~~d~Y~dt~~~~L---~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l~l 108 (185)
T PF01928_consen 35 QTDTYFDTPDRDL---RKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEALGL 108 (185)
T ss_dssp EEEEEEEETTTHH---HHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHTTC
T ss_pred EEEEEEeCCChhH---HhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHhcC
Confidence 3455554453221 134689999976 6666699999999998 666777765 123556778889
Q ss_pred hhhhheeeeeeEEecCeEEEEEeccccC--CCceEEEecCCHHHHHHhhhh-------ccccc-ccccchhhccC
Q 004177 706 QAVAYIEASAFIYQDGKILIEVDHLQDA--PSPYLQIKGVDKEAVAAAGST-------LKLDG-SYTTKVMSLAL 770 (770)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~-------~~~~~-~~~~~~~~~~~ 770 (770)
+.++.+.-..+.|.-+++.|.+|+.+.+ ....|.+++.+...+.+++.+ ||+.. +-++++|++++
T Consensus 109 ~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 109 RPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp EEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred ceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 9999888888888888899999999999 445566788888998888888 89887 88999999874
No 153
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.66 E-value=4e-06 Score=87.05 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=28.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+--++||.|+||||||||++.|+....+. +++..+.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~~G 68 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILLDG 68 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEECC
Confidence 44689999999999999999999977544 34444433
No 154
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.65 E-value=0.00025 Score=72.29 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=31.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccee
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 460 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy 460 (770)
...++.+|+|+|++||||||+++.|+..+. ..+++.|++.
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 346789999999999999999999999772 3455556554
No 155
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.64 E-value=0.00013 Score=72.69 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc--cccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~--vis~Ddfy~~ 462 (770)
.+|.++|++||||||+++.|+..++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 478899999999999999999988644 3577877654
No 156
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.63 E-value=0.00024 Score=71.41 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
-+++|.|+|||||||+++.|+..+++..++.|+++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~ 40 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA 40 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence 3788999999999999999999999888888887654
No 157
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.59 E-value=3.5e-05 Score=77.60 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=33.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 463 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~ 463 (770)
.|.|.|||||||||+|+.|++.++.+.+|.+++++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~ 38 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAA 38 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhh
Confidence 3668999999999999999999999999999999863
No 158
>PRK13808 adenylate kinase; Provisional
Probab=97.54 E-value=0.00022 Score=78.32 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=32.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.|.||+||||||++..|++.++..+||+++.++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHH
Confidence 56799999999999999999999999999988864
No 159
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=1e-05 Score=90.01 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-+++|.||||||||||.+.|+..+.+.
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 4589999999999999999999977543
No 160
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=2.7e-05 Score=83.25 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=35.8
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhccccccceeeecCC
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMYLRLP 646 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~fv~~y~~~Yl~~~ 646 (770)
+.+.+.++.+-.++-.++..+++.|++...+.+..+.+ .--..||-+|+-.-.+.+
T Consensus 190 ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~-~P~s~fV~~f~G~~n~~~ 245 (345)
T COG1118 190 TTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD-HPASRFVARFLGEVNVLP 245 (345)
T ss_pred eEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc-CCCccceecccccceecc
Confidence 45667777777777788888888887766666555543 223456666655444444
No 161
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.52 E-value=2.2e-05 Score=86.90 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.-++||.||||||||||+++|+..+.+.
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~p~ 58 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLERPT 58 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34589999999999999999999977543
No 162
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.51 E-value=2.8e-05 Score=80.84 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--+|+|.||||||||||.+.|.....+.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt 58 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 34589999999999999999999977654
No 163
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.50 E-value=6.8e-05 Score=72.83 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=41.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK 469 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n 469 (770)
.+-+.+|-|.|++||||||+++.|.+.|++..+.+|||+-..+...+.
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~ 56 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMT 56 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHh
Confidence 445668889999999999999999999999999999999886554443
No 164
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.0003 Score=70.40 Aligned_cols=125 Identities=21% Similarity=0.211 Sum_probs=76.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
.+.+.||-|.|++||||-|.|..|++.++.+.+|+.|..+.+.... ++---.++. ..+++|..+..-+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~I~---~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGALIK---EIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHHHH---HHHHcCCcCcHHHHHH
Confidence 3568899999999999999999999999999999999988643221 111111122 2233444332211110
Q ss_pred ccCccCCccceeeccCccEEEEEcccc-------chhhhhhcCCeEEEEEcChhHHHHHHHHhccc
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYA-------LHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 560 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~-------l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~ 560 (770)
-..+ .+.......-+++||.-= |...+....|+.+|++++.++.+.|.+.|...
T Consensus 76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 0000 000011122377777432 11223335689999999999999999999855
No 165
>PLN02674 adenylate kinase
Probab=97.45 E-value=0.00063 Score=71.86 Aligned_cols=121 Identities=12% Similarity=-0.023 Sum_probs=68.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
..+..|.|.||+||||||+++.|++.++...||+++..+.+-... .+ +-.+.-..+..|+.+.-......
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~----s~------~g~~i~~~~~~G~lvpd~iv~~l 98 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TP------LGIKAKEAMDKGELVSDDLVVGI 98 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhcc----Ch------hhHHHHHHHHcCCccCHHHHHHH
Confidence 334567789999999999999999999999999999987531100 00 00111111223433221111110
Q ss_pred cCccCCccceeeccCccEEEEEccccch------hhhh----hcCCeEEEEEcChhHHHHHHHHhc
Q 004177 503 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIR----KSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 503 ~g~r~~~~~~~~~~~~~VVIvEG~~~l~------~~l~----~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..++. .......-+|++|.---. +++. -.+|..++++.+.+.-+.|...|.
T Consensus 99 v~~~l-----~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 99 IDEAM-----KKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HHHHH-----hCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 00100 001112457778755321 1111 247899999999988888877664
No 166
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=0.00041 Score=67.19 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=37.1
Q ss_pred eCCCCccHHHHHHHHHHHhCCccccccceeccccccccCcccc
Q 004177 431 GGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF 473 (770)
Q Consensus 431 ~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p 473 (770)
.|.+||||||++..|+..|++..+.+|+|+-..++.++..+.|
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiP 43 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIP 43 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCC
Confidence 3899999999999999999999999999998877666655544
No 167
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.42 E-value=3.7e-05 Score=79.79 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=30.7
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCC
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 626 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~m 626 (770)
.-++|.|+.+....-.++.+++..++++..|.+....
T Consensus 198 T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 198 TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred EEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 4578889999888899999999999888887776654
No 168
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.42 E-value=0.00023 Score=76.87 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=32.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy~ 461 (770)
+.+|-+.|++||||||+|+.|++.+ +..+++.|++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence 4577889999999999999999999 788899988753
No 169
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.40 E-value=3e-05 Score=89.85 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 28 ~Ge~~~liG~nGsGKSTLl~~l~G~~~p 55 (490)
T PRK10938 28 AGDSWAFVGANGSGKSALARALAGELPL 55 (490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3458999999999999999999997754
No 170
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00044 Score=68.66 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=69.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc-ccCc-cccccccHHHHHHHHHHHhcCCCccccccccccC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-DFKY-DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETG 504 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~-~~n~-d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g 504 (770)
.|+|+|.+|.||||+|+.|+ .+|..++++-+|....... .++- ...--.|.+.+...+..+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~-------------- 66 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR-------------- 66 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc--------------
Confidence 68999999999999999999 7999888888887653311 1110 01223667777776665321
Q ss_pred ccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcc
Q 004177 505 ARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 567 (770)
Q Consensus 505 ~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~ 567 (770)
..-.|+||-++- +.+.+|+.|.+.+++..-..|... ||++.+
T Consensus 67 -------------~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~L~~RLk~-----RGy~~e 108 (180)
T COG1936 67 -------------EGSGIVDSHLSH---LLPDCDLVVVLRADPEVLYERLKG-----RGYSEE 108 (180)
T ss_pred -------------cCCeEeechhhh---cCCCCCEEEEEcCCHHHHHHHHHH-----cCCCHH
Confidence 134566665542 334789999999988765555443 576654
No 171
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.39 E-value=1.8e-05 Score=88.54 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-+++|.||||||||||++.|+..+.+
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl~~p 55 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLEDI 55 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999997654
No 172
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.38 E-value=2.1e-05 Score=86.57 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=94.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccC--------------cc--------------------
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFK--------------YD-------------------- 471 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n--------------~d-------------------- 471 (770)
-.+||.|-||||||||..+|...+... +...|.+++...++ |.
T Consensus 314 qTlGlVGESGSGKsTlG~allrL~~s~---G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL 390 (534)
T COG4172 314 QTLGLVGESGSGKSTLGLALLRLIPSQ---GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGL 390 (534)
T ss_pred CeEEEEecCCCCcchHHHHHHhhcCcC---ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhh
Confidence 479999999999999999999987543 44444432211110 11
Q ss_pred ---ccccccHHHHHHHHHHHhcCC--Ccccccc--ccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEE
Q 004177 472 ---DFSSLDLSLLSKNISDIRNGR--RTKVPIF--DLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV 544 (770)
Q Consensus 472 ---~p~t~D~~ll~~~L~~L~~g~--~v~~P~y--D~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd 544 (770)
+|.--+-+........|.+-. +...-.| .||.|+|+ .+.+ ++.+|++.-+.+.+++.+.+|..|...
T Consensus 391 ~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ---RIAI---ARAliLkP~~i~LDEPTSALD~SVQaQ 464 (534)
T COG4172 391 RVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ---RIAI---ARALILKPELILLDEPTSALDRSVQAQ 464 (534)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh---HHHH---HHHHhcCCcEEEecCCchHhhHHHHHH
Confidence 122222344444555555421 1222233 66777776 3333 567788888877788888888644321
Q ss_pred cChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCCCCCCCCccchhhhhccccccchhhhcc
Q 004177 545 GGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILK 624 (770)
Q Consensus 545 ~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~ 624 (770)
=..|.|.++.. . ..|-+.|.++..-.-.-+|.+++++.|++|..|+...
T Consensus 465 ---vv~LLr~LQ~k---~-------------------------~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~ 513 (534)
T COG4172 465 ---VLDLLRDLQQK---H-------------------------GLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEA 513 (534)
T ss_pred ---HHHHHHHHHHH---h-------------------------CCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHH
Confidence 12333333321 1 1233566676665555667788899999988877777
Q ss_pred CCC
Q 004177 625 ILD 627 (770)
Q Consensus 625 ~mt 627 (770)
+++
T Consensus 514 if~ 516 (534)
T COG4172 514 VFA 516 (534)
T ss_pred Hhc
Confidence 664
No 173
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.37 E-value=3.4e-05 Score=80.16 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.|+||||||||++.|+..+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 174
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.36 E-value=2e-05 Score=87.66 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.||||||||||.+.|+....+
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~p 56 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLERQ 56 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 348999999999999999999997654
No 175
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.36 E-value=0.00078 Score=69.90 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=36.6
Q ss_pred CCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhcccc-ccCcccEEEc
Q 004177 537 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP-HLVHAHLKIR 595 (770)
Q Consensus 537 lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p-~~~~ADivI~ 595 (770)
.|+.||++++.+..+.|...|.... .......|+..+...|.++..+ ....+++++.
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~i 200 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPH--EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQY 200 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCch--hhcccHHHHHHHHHHHHHHHHHhhccCCCEEEE
Confidence 5899999999999888876654211 0011246777777888777654 3344666543
No 176
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=2.1e-05 Score=87.47 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-+++|.||||||||||.+.|+....+.
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCCCC
Confidence 4589999999999999999999977543
No 177
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00074 Score=67.93 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
+..++.|+||||+||||++++|-+..+.. +|...-=+....++.+--+.-=.+. .+..+.+..++-++...|.-.-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~-~SVS~TTR~pR~gEv~G~dY~Fvs~---~EF~~~i~~~~fLE~a~~~gny 78 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLR-FSVSATTRKPRPGEVDGVDYFFVTE---EEFEELIERDEFLEWAEYHGNY 78 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeE-EEEEeccCCCCCCCcCCceeEeCCH---HHHHHHHhcCCcEEEEEEcCCc
Confidence 45678899999999999999999876321 1111111111111111101000111 2233334455555544433211
Q ss_pred -CccCCcccee-eccCccEEEEEccccchhhhhhcC-C-eEEEEEcChhHHHHHHHHhcc
Q 004177 504 -GARSGFKELE-VSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 504 -g~r~~~~~~~-~~~~~~VVIvEG~~~l~~~l~~~l-D-~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
|.... .+. ......-+|+|--.-+...+++.+ + ..||+.+|.-..|.+|+.+..
T Consensus 79 YGT~~~--~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 79 YGTSRE--PVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred ccCcHH--HHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC
Confidence 11110 111 112234455554444444444444 4 578999999999999987643
No 178
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00037 Score=69.51 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|-++|+.||||||+.+.||+.|+...+++|...-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~ 39 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK 39 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence 45689999999999999999999998999887654
No 179
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.34 E-value=2.4e-05 Score=87.08 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-+++|.||||||||||++.|+..+.+.
T Consensus 28 Ge~~~llGpsGsGKSTLLr~IaGl~~p~ 55 (353)
T PRK10851 28 GQMVALLGPSGSGKTTLLRIIAGLEHQT 55 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3489999999999999999999977543
No 180
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.32 E-value=2.4e-05 Score=87.72 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.||||||||||.+.|+..+.+
T Consensus 40 Ge~~~LlGpsGsGKSTLLr~IaGl~~p 66 (375)
T PRK09452 40 GEFLTLLGPSGCGKTTVLRLIAGFETP 66 (375)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 348999999999999999999997754
No 181
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.31 E-value=0.00081 Score=79.33 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=45.7
Q ss_pred ecCCCCcccchhhHHHHHHHHHH-HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC------ccccccce
Q 004177 396 VPMPDSYDFDRGLLLSVQAIQAL-LENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESY 459 (770)
Q Consensus 396 ~~~~~~~~~~e~~~~~~~~i~~l-~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~------~vis~Ddf 459 (770)
...|+|+..-|..- .+... ..+..++.+|.|+|.+||||||+++.|+..++. .++++|..
T Consensus 366 ~~pP~~f~rpeV~~----iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 366 LEIPEWFSFPEVVA----ELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCCChhhcHHHHHH----HHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 67899998887532 22222 234567889999999999999999999999975 66777766
No 182
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.28 E-value=0.0017 Score=65.17 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=30.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
+...+.+|+|+|++||||||+++.|...+. ..+++.|++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 346788999999999999999999999873 334555554
No 183
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.27 E-value=3.3e-05 Score=88.99 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=29.4
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCC
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 626 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~m 626 (770)
+-+.|.|+..+.-..+|+..+++.|+++..+....++
T Consensus 482 t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 4478899999999999999999999888766544444
No 184
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.26 E-value=0.00058 Score=67.31 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~ 461 (770)
++.+|-|+|.+||||||+|+.|...|. +.++++|.+-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 478999999999999999999999883 44566665543
No 185
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.26 E-value=5.9e-05 Score=81.82 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++|+.|||||||||+.+.|+..+.+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3469999999999999999999998754
No 186
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.26 E-value=4.8e-05 Score=84.58 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-+++|.||||||||||++.|+..+.+
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~p 50 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTRP 50 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 348999999999999999999997653
No 187
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.24 E-value=0.00058 Score=66.58 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+|.|.|++||||||+++.|+..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999988
No 188
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.24 E-value=0.00044 Score=69.79 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=33.3
Q ss_pred cCCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhcccc
Q 004177 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 585 (770)
Q Consensus 536 ~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p 585 (770)
..|+.+|++++.++.+.|...|.... ......+|+..+...|..++..
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence 47899999999999988866654211 1111246777788888888765
No 189
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.24 E-value=0.0014 Score=66.04 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=62.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----CccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~----~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
.+|.|+|||||||+|+++.|..... ..+.+...--+. ++.+-.+ +-+---.+.-..+..|+-++...|.-
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~---~e~~g~d---y~fvs~~ef~~~i~~g~fve~~~~~g 76 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRP---GEVNGVD---YHFVSREEFEDDIKSGLFLEWGEYSG 76 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCC---CCcCCce---EEECCHHHHHHHHHcCCeEEEEEEcC
Confidence 4677899999999999999998752 111111111111 0000000 00111122233445566665544432
Q ss_pred cc-CccCCccce-eeccCccEEEEEccccchhhhhhc-CC-eEEEEEcChhHHHHHHHH
Q 004177 502 ET-GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ 556 (770)
Q Consensus 502 s~-g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~-lD-~~I~Vd~~~d~rL~Rri~ 556 (770)
.. |... ..+ ......+++|+++-.-....+... .+ +.||+.++....+.+|+.
T Consensus 77 ~~YGt~~--~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 77 NYYGTSK--ETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred cCcccCH--HHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 21 1111 011 112346788988876655545443 34 788998777766776665
No 190
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.24 E-value=0.0024 Score=64.45 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999885
No 191
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.21 E-value=0.00031 Score=76.71 Aligned_cols=40 Identities=35% Similarity=0.577 Sum_probs=36.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--eeccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKSE 463 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd--fy~~~ 463 (770)
.+.+|.|+||+||||||++..|++.++..+||.|+ +|+.-
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l 44 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGM 44 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecc
Confidence 35689999999999999999999999999999999 67763
No 192
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.20 E-value=0.00054 Score=69.87 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=30.6
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCccccccceec
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 461 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L---~~~vis~Ddfy~ 461 (770)
.+..|.++.++|++||||||++..+...+ +..+|+.|.|-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34689999999999999999999999987 466788888743
No 193
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.19 E-value=4e-05 Score=85.50 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 58 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGFVKAA 58 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3489999999999999999999976554
No 194
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=97.18 E-value=0.0014 Score=65.82 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=96.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCcccc----c------cccccCcccCCeEEEcCCCcEEEEEecccch----HHhh
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIP----M------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLR 74 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P----~------YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~----~~l~ 74 (770)
..|-.|+|.|++.|.+...+--+.+.-... . |....++.++++. ...+++|+..||+|.-- -.+.
T Consensus 66 isyFgpeANdf~~LE~~f~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~-lpe~sDvLFYEGLHGgvVt~~~nvA 144 (289)
T COG3954 66 ISYFGPEANDFGLLEQTFIEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQP-LPEPTDVLFYEGLHGGVVTPQHNVA 144 (289)
T ss_pred ceecCccccchHHHHHHHHHhcccCCcchhhhhhchhhcCccCCCCCCCCCccc-CCCccceeeeeccccceecCcccHh
Confidence 355589999999999998886432221222 2 3333344555533 35679999999999886 3678
Q ss_pred hcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccEEEe
Q 004177 75 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRIN 132 (770)
Q Consensus 75 ~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~ 132 (770)
+..|++|-+..=..+.++.++.||..+| ++.|.+++.+ .++|-.||-|+-..-||-.+
T Consensus 145 qHvDlliGvVPivNLEWIQK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINFQ 206 (289)
T COG3954 145 QHVDLLVGVVPIVNLEWIQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQ 206 (289)
T ss_pred hhhceeeeeeeEeeHHHHHHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccccee
Confidence 8999999999999999999999999999 9999999986 79999999999888887443
No 195
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.18 E-value=0.00064 Score=71.76 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+|.++|++||||||+|+.|++.++
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999873
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.17 E-value=5.8e-05 Score=79.99 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p 56 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 197
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.17 E-value=5.2e-05 Score=83.94 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=24.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||.+.|+..+.+.
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~Gl~~p~ 94 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILGMTSPD 94 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 4599999999999999999999987543
No 198
>PLN02459 probable adenylate kinase
Probab=97.15 E-value=0.0014 Score=69.89 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
+++.|.|.||+||||||+++.|++.++...+|+.+.++.+-... . ++-.+.-..+..|+.+.--......
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t------~lg~~i~~~~~~G~lVPdeiv~~ll 97 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----G------PLGAQLKEIVNQGKLVPDEIIFSLL 97 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----c------hhHHHHHHHHHcCCccCHHHHHHHH
Confidence 44567788999999999999999999999999999887531100 0 0011111122333322111100000
Q ss_pred CccCCccceeeccCccEEEEEccccchh---hhhh--cCCeEEEEEcChhHHHHHHHHhc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK--SLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~~---~l~~--~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..+.. .. ......-+|+||.=--.. .+.. .+|..++++.+.+.-+.|...|.
T Consensus 98 ~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 98 SKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 00000 00 001235678888543211 1111 36899999999988888777664
No 199
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.15 E-value=0.00034 Score=75.82 Aligned_cols=38 Identities=34% Similarity=0.604 Sum_probs=33.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~-vis~Ddfy 460 (770)
..|++|.|+|++||||||+|..|+..++.. +++.|.+-
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 478999999999999999999999999875 77877665
No 200
>PRK14526 adenylate kinase; Provisional
Probab=97.14 E-value=0.0014 Score=67.78 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.|.||+||||||+++.|++.++...+|.++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence 66899999999999999999999999998888774
No 201
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.00047 Score=76.76 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=83.8
Q ss_pred cceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecce-eecCCCcccCceeEEEEeh---hH-----------H
Q 004177 165 EAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQ-RIVDKNFIIRPKAEFEVGR---MT-----------L 229 (770)
Q Consensus 165 ~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp-~~~~~~~~ik~r~E~ev~v---~~-----------~ 229 (770)
....|+|||+|+++++..+-.| |||+.|+++.+|.|-- +..++. -.|.|+++.+ .. .
T Consensus 34 ~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl---H~RpEyn~~L~~~~~~~~~~p~~~~p~ 105 (432)
T COG3025 34 QQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL---HQRPEYNVPLPEDTLDLAELPRDRWPA 105 (432)
T ss_pred hhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc---ccCccccccCCCCCcchhhChhhhccc
Confidence 3456899999999999999998 9999999999999933 223333 5899999998 11 0
Q ss_pred HH---HHhcCcceeEEEEEEEEEEEe----CCEEEEEeccC----CCCCCeEEEEec----ChhHHHHHHHHcCC
Q 004177 230 GG---LLDLGYSVVASYKRASTYVVY----GNLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMGI 289 (770)
Q Consensus 230 ~i---L~~LGf~~~~~~~K~R~~y~~----~~~~v~lD~v~----~lG~~FvEIE~~----~~~~i~~~a~~Lgl 289 (770)
++ ....-..|+++..=.|+.|.. ..++|.+|... +.-.|+-|||.. +...+.++++.|-.
T Consensus 106 ~~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~~ 180 (432)
T COG3025 106 GIFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLAE 180 (432)
T ss_pred ccCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHHH
Confidence 11 123346789999999999964 35778889874 455566677654 44566666655433
No 202
>PHA00729 NTP-binding motif containing protein
Probab=97.13 E-value=0.003 Score=65.87 Aligned_cols=38 Identities=34% Similarity=0.215 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 411 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 411 ~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
|...++.+.. .....|.|+|++|+||||||.+|+..++
T Consensus 5 ~k~~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYNN--NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444544433 3456788999999999999999999875
No 203
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.12 E-value=8.7e-05 Score=80.95 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||.+.|+..+.+
T Consensus 33 Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 33 GECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999997754
No 204
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.12 E-value=9.1e-05 Score=86.35 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~p 63 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVPP 63 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 205
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00016 Score=84.14 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||++.|+..+.+
T Consensus 289 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 315 (510)
T PRK09700 289 GEILGFAGLVGSGRTELMNCLFGVDKR 315 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 458999999999999999999987643
No 206
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.10 E-value=0.00029 Score=70.92 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=57.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHH-HHHHHHHhcCCCccccccccccCc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRRTKVPIFDLETGA 505 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll-~~~L~~L~~g~~v~~P~yD~s~g~ 505 (770)
||.|+|..|||++|+++.||+.||..+++-+.+....+......+....+|-... ...+..+..+.... +..+....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPG-SFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS---------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhcccccc-ccccccHHH
Confidence 6899999999999999999999998865553333222212222222333333322 22222222211000 000111100
Q ss_pred cCCc---cceeeccCccEEEEEccccchhhhhhcCC--eEEEEEcChhHHHHHHHHhcc
Q 004177 506 RSGF---KELEVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 506 r~~~---~~~~~~~~~~VVIvEG~~~l~~~l~~~lD--~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.... +.+.......-+|+.|.++.+ +....+ +.||+.+|.+.|+.|.++|..
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~--il~~~~~~l~V~i~A~~~~Rv~ri~~~~~ 136 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCANY--ILRDIPNVLHVFIYAPLEFRVERIMEREG 136 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHHH--HTTT-TTEEEEEEEE-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHhh--hhCCCCCeEEEEEECCHHHHHHHHHHHcC
Confidence 0000 001111123467788888764 222222 899999999999999998853
No 207
>PRK14529 adenylate kinase; Provisional
Probab=97.09 E-value=0.0019 Score=67.34 Aligned_cols=116 Identities=16% Similarity=0.042 Sum_probs=65.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCccC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 507 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~ 507 (770)
|.|.||+||||||.++.|++.++...+|..+.++.+-.. +.+ +-.+.-..+..|..+.-........++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~----~t~------lg~~i~~~i~~G~lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG----GTE------LGKKAKEYIDRGDLVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC----CCh------HHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 667999999999999999999999988888887643100 000 1111111223333321111111011111
Q ss_pred CccceeeccCccEEEEEccccch---hhhh-------hcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 508 GFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 508 ~~~~~~~~~~~~VVIvEG~~~l~---~~l~-------~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.... ..-+|++|.=--. ..+. -.+|..++++.+.+.-+.|...|..
T Consensus 73 -----~~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 73 -----KQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred -----hccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 0011 3457888854321 1111 2378999999999988888877643
No 208
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00017 Score=83.80 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||.+.|+..+.
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCc
Confidence 345899999999999999999998764
No 209
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.07 E-value=0.0019 Score=66.46 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..+.+.+|.|+|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3567889999999999999999999864
No 210
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.06 E-value=0.0006 Score=66.22 Aligned_cols=112 Identities=23% Similarity=0.156 Sum_probs=60.9
Q ss_pred eeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCccCCc
Q 004177 430 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 509 (770)
Q Consensus 430 I~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~ 509 (770)
|.||+||||||+|+.|++.++...||..+..+..-... + ++-.+.-..+.+|+.+.-...-.-...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~-------s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l-- 68 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSD-------S---ELGKQIQEYLDNGELVPDELVIELLKERL-- 68 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTT-------S---HHHHHHHHHHHTTSS--HHHHHHHHHHHH--
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhh-------h---HHHHHHHHHHHhhccchHHHHHHHHHHHH--
Confidence 57999999999999999999999999888876431110 0 11112222344455432211111111111
Q ss_pred cceeeccCccEEEEEccccch------hh----hhhcCCeEEEEEcChhHHHHHHHH
Q 004177 510 KELEVSEDCGVIIFEGVYALH------PE----IRKSLDLWIAVVGGVHSHLISRVQ 556 (770)
Q Consensus 510 ~~~~~~~~~~VVIvEG~~~l~------~~----l~~~lD~~I~Vd~~~d~rL~Rri~ 556 (770)
.......-+|+||.=--. .. .....+..|+++++.+....|...
T Consensus 69 ---~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 69 ---EQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ---HSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ---hhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 001234678899876432 11 123357899999998866665444
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.06 E-value=0.00011 Score=73.74 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=28.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+--+++|.||||||||||++.|+..+.+. ++..++..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~--~G~v~~~g 60 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDG 60 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 34589999999999999999999976543 45555544
No 212
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.00022 Score=74.64 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--+|+|.||||||||||.+.++....+.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34589999999999999999999977543
No 213
>PLN02165 adenylate isopentenyltransferase
Probab=97.05 E-value=0.00048 Score=75.57 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--eccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSE 463 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~~ 463 (770)
+....+|+|+||+|||||||+..|+..++..++++|.. |++.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgl 83 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGL 83 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCc
Confidence 34455889999999999999999999999999999976 5553
No 214
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.05 E-value=5.3e-05 Score=78.26 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.4
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhh
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFC 632 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~ 632 (770)
+-+.+..+.+.+++..|+.|++..|+++..+.......++.+.
T Consensus 189 tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~ 231 (237)
T COG0410 189 TILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVR 231 (237)
T ss_pred EEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHH
Confidence 4466777788888999999999999999999888888776664
No 215
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=6.7e-05 Score=84.22 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-+++|.||||||||||.+.|+....+
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~~p 71 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFEQP 71 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 358999999999999999999987644
No 216
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.04 E-value=0.00052 Score=75.78 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC------Cccccccceecc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS 462 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~------~~vis~Ddfy~~ 462 (770)
+.++|++||||||+++.|+..+. +.++++|||+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 56899999999999999998775 448999999964
No 217
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.03 E-value=0.0008 Score=79.12 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+...|-++|..||||||+++.|++.|+...+++|.+...
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~ 43 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER 43 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 334566799999999999999999999999999987654
No 218
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.02 E-value=2.7e-05 Score=78.76 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=33.7
Q ss_pred EEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhc
Q 004177 592 LKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCS 633 (770)
Q Consensus 592 ivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~ 633 (770)
++-+++..-.+.-.++-|++..|+..+.|.+....++++|++
T Consensus 193 LITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~ 234 (243)
T COG1137 193 LITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRR 234 (243)
T ss_pred EEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhh
Confidence 344666666678888888899999999999999988888864
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00014 Score=84.65 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 30 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 57 (510)
T PRK09700 30 PGEIHALLGENGAGKSTLMKVLSGIHEP 57 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCcCC
Confidence 3458999999999999999999987643
No 220
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.01 E-value=0.001 Score=66.81 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=62.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc--ccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ--VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~--~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
.+|.|+||+|||||||++.|.+.++-.+ ..=.-+-++. .++.+-.+..-.+-+ +..+....|+-++...|+-..
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~-~~~v~~TTR~~r~~E~~g~~y~fvs~~---~f~~~~~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF-GRVVSHTTRPPRPGEVDGVDYHFVSKE---EFERMIKAGEFIEYGEYDGNY 78 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE-EEEEEEESS-GGTTS-TTTSEEE--HH---HHHHHHHTTHEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc-ccceeecccCCcccccCCcceEEEeec---hhhhhhccccEEEEeeecchh
Confidence 4566799999999999999998764211 0000011111 111111010001111 122334456666655554221
Q ss_pred -CccCCccce-eeccCccEEEEEccccchhhhhhc--CCeEEEEEcChhHHHHHHHHh
Q 004177 504 -GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 504 -g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~--lD~~I~Vd~~~d~rL~Rri~R 557 (770)
|... ..+ .+.....+++++.-..+...+... .-+.||+.++....+.+++.+
T Consensus 79 YGt~~--~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~ 134 (183)
T PF00625_consen 79 YGTSK--SAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR 134 (183)
T ss_dssp EEEEH--HHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred hhhcc--chhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence 2111 011 122345677776554444444443 226889988888888888755
No 221
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0004 Score=70.33 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=80.0
Q ss_pred CCCCCCcccccHHHHHHHHHHH-hCCCCcc--------ccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcC
Q 004177 8 VDEGNDLDSIDFDALVQNLQDL-TEGKDTL--------IPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLL 77 (770)
Q Consensus 8 ~~d~d~Pda~D~~~l~~~L~~L-k~g~~i~--------~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~ 77 (770)
..+||.++|+|+++|.+.+..- ++..... .-.+++-.... .+......+|||||.+++. +.+.+.+
T Consensus 53 ~~~wd~~esLdm~~fl~~ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~ 128 (225)
T KOG3308|consen 53 IDNWDLLESLDMEKFLEKIATWLDSRHNAPEAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLF 128 (225)
T ss_pred cchhcchhhhhHHHHHHHHHHHhcCccccchHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhh
Confidence 4688999999999999988874 4323221 11222222222 2234567899999999998 9999999
Q ss_pred CeEEEEecCchhHHHHHhhhccccCCCHHHH--HH-HHHHhhhccccccCCcc--cEEEeCC
Q 004177 78 DIRVAVVGGVHFSLISKVQYDIGDSCSLDSL--ID-SIFPLFRKHIEPDLHHA--QIRINNR 134 (770)
Q Consensus 78 DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v--~~-~v~p~~~~yI~P~k~~A--DiVI~~~ 134 (770)
|.+|++..|.+.+..||-.|-..- +.+. .+ .++|.|.++.+-.+..+ |...-|+
T Consensus 129 d~~im~~~~y~~~krRr~~Rt~y~---p~~tgyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 129 DRIIMLTLDYETCKRRREARTYYP---PDDTGYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred hhheeeeccHHHHHHhhcccccCC---CCCCccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 999999999999999987663321 2222 22 24777777665444443 5555444
No 222
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.99 E-value=0.00019 Score=83.40 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 56 (501)
T PRK10762 29 PGRVMALVGENGAGKSTMMKVLTGIYTR 56 (501)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3469999999999999999999997743
No 223
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00018 Score=83.74 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 30 AGEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997754
No 224
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.95 E-value=0.00024 Score=82.78 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.-++||.||||||||||++.|+..+.
T Consensus 289 Ge~~~l~G~NGsGKSTLl~~i~Gl~~ 314 (510)
T PRK15439 289 GEILGLAGVVGAGRTELAETLYGLRP 314 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45899999999999999999998764
No 225
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.93 E-value=0.00059 Score=70.10 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++.|+||||||||||.+||..+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 345888999999999999999998543
No 226
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.93 E-value=0.0011 Score=73.25 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccc
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLES 458 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Dd 458 (770)
..+++.+|||+|++|||||||+..|...+. +.+++.|.
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 456899999999999999999999988773 44666664
No 227
>PRK13947 shikimate kinase; Provisional
Probab=96.93 E-value=0.00063 Score=67.15 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
-|.|.|++||||||+++.|++.|+.++++.|.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~ 37 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE 37 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence 37789999999999999999999999999998754
No 228
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0035 Score=60.89 Aligned_cols=103 Identities=18% Similarity=0.319 Sum_probs=66.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc-ccC--ccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-DFK--YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~-~~n--~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
-|.|+|-+|+|||||+..||+.++...|.+.++.+..+.- .++ ++. --+|-+.+.+.|..+..+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c-~i~DEdkv~D~Le~~m~~------------ 75 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKC-HILDEDKVLDELEPLMIE------------ 75 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccC-ccccHHHHHHHHHHHHhc------------
Confidence 4558999999999999999999999999999888865421 111 111 235667777777664321
Q ss_pred CccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
+..||=--|. -++|+ -.+|+.+.+.+|...-..|...|.
T Consensus 76 -------------Gg~IVDyHgC-d~Fpe--rwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 76 -------------GGNIVDYHGC-DFFPE--RWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred -------------CCcEEeeccc-Cccch--hheeEEEEEecCchHHHHHHHHcC
Confidence 1111111121 12332 357889999999887777766554
No 229
>PLN02840 tRNA dimethylallyltransferase
Probab=96.88 E-value=0.00084 Score=75.88 Aligned_cols=40 Identities=30% Similarity=0.573 Sum_probs=35.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--ecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~ 462 (770)
....+|.|+||+|||||||+..|++.++..+|+.|.+ |+.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~ 60 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRG 60 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecc
Confidence 4566899999999999999999999999999999984 554
No 230
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=96.87 E-value=0.0019 Score=64.94 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=30.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC--ccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~--~vis~Ddfy~~ 462 (770)
.||-+.|+|.|||||++++|.+.+.- ..+++|.|...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 37889999999999999999999864 36788999873
No 231
>PLN02842 nucleotide kinase
Probab=96.84 E-value=0.0015 Score=75.49 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred eeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 430 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 430 I~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.|++||||||+++.|++.++..+++.++..+.
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ 34 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRA 34 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 689999999999999999999999998888764
No 232
>PRK13948 shikimate kinase; Provisional
Probab=96.82 E-value=0.0009 Score=67.68 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=35.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
...+..|.++|.+||||||+++.|++.++..++++|.+..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie 46 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIE 46 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHH
Confidence 3456788899999999999999999999999999997654
No 233
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.81 E-value=0.0039 Score=67.57 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.+.+|+|+|++||||||+++.|.. +|..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~ 32 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYY 32 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCe
Confidence 356899999999999999999974 4543
No 234
>PLN02748 tRNA dimethylallyltransferase
Probab=96.80 E-value=0.00099 Score=76.43 Aligned_cols=42 Identities=33% Similarity=0.544 Sum_probs=37.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--eeccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKSE 463 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd--fy~~~ 463 (770)
...+.+|.|+||+|||||||+..|+..++..+|++|. +|+.-
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgL 62 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGL 62 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCc
Confidence 3456689999999999999999999999999999996 68863
No 235
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.80 E-value=0.0019 Score=64.74 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=74.1
Q ss_pred ccccHHHHHHHHHH----HhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCCeEEEEecCchhH
Q 004177 15 DSIDFDALVQNLQD----LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS 90 (770)
Q Consensus 15 da~D~~~l~~~L~~----Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~r 90 (770)
..+|-..|.+.+.. ++.-+.+..|.+...-...... .....++|+|+.+++...+.+++|..|||++|.+++
T Consensus 60 g~idr~~L~~~vf~~~~~~~~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~r 135 (179)
T cd02022 60 GELDRKKLGEIVFADPEKRKKLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQ 135 (179)
T ss_pred CcCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHH
Confidence 34566555555443 2223445555543332222211 122469999999998877888999999999999999
Q ss_pred HHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCCC
Q 004177 91 LISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 91 l~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
+.|.+.||. .+.+++..++..... .++.+..||+||.|+.+
T Consensus 136 i~Rl~~Rd~---~s~~~~~~r~~~Q~~--~~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 136 IERLMKRDG---LSEEEAEARIASQMP--LEEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHcCC---CCHHHHHHHHHhcCC--HHHHHHhCCEEEECcCC
Confidence 999999983 456777776633211 12346889999998643
No 236
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.79 E-value=0.0013 Score=69.64 Aligned_cols=37 Identities=27% Similarity=0.605 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 413 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 413 ~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..++.+..+.++..+|||+||+|+|||||...|...+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3455555666788999999999999999999999877
No 237
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.77 E-value=0.0006 Score=71.19 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=24.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--.|||.|++|||||||.+.|+..+.+.
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 4589999999999999999999988643
No 238
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.76 E-value=0.00078 Score=66.21 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=26.7
Q ss_pred CCccHHHHHHHHHHHhCCccccccceecc
Q 004177 434 SGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 434 sGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+||||||+++.||..|+.+.+++|+++..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 59999999999999999999999998753
No 239
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.73 E-value=0.0012 Score=61.37 Aligned_cols=30 Identities=33% Similarity=0.716 Sum_probs=25.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 457 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~D 457 (770)
|.|.||+|+||||+++.+++.++..++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccc
Confidence 457999999999999999999986654443
No 240
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.73 E-value=0.0013 Score=65.97 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.+++|+|++|||||||+++|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4677999999999999999999998875
No 241
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.71 E-value=0.0005 Score=80.08 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 287 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 313 (506)
T PRK13549 287 RGEILGIAGLVGAGRTELVQCLFGAYP 313 (506)
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 242
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.001 Score=68.90 Aligned_cols=43 Identities=33% Similarity=0.400 Sum_probs=36.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK 466 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~ 466 (770)
.--+-+|.||||||||||+..|+..-+..+.+++..|..+++.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 4457889999999999999999998778888999999886643
No 243
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.69 E-value=0.0022 Score=74.78 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
...|.+|.+.|++||||||+++.++...+..+++.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 35688999999999999999999999888888888875
No 244
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0014 Score=67.17 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceecc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKS 462 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~ 462 (770)
-.+..|.+++||||||||||.++|..... ..-+.+...|.+
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 34667999999999999999999997542 122344444444
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.0012 Score=67.61 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=31.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~ 462 (770)
|.+|.+.||+|+||||.+.+|+..+. +.++++|.|--.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 68999999999999999999998772 557788777543
No 246
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.67 E-value=0.0011 Score=65.71 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.0
Q ss_pred eCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 431 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 431 ~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.|+|||||||+++.|++.++...++.|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence 4999999999999999999988889988754
No 247
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.66 E-value=0.001 Score=66.66 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-+++|.||||||||||.+.++...-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccC
Confidence 346899999999999999999999764
No 248
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.66 E-value=0.0015 Score=64.97 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
+..+|+|+|++||||||+++.|+..+. +.++++|.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 456899999999999999999999883 345666655
No 249
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.66 E-value=0.0012 Score=66.57 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987654
No 250
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.64 E-value=0.0013 Score=67.76 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 458999999999999999999997754
No 251
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.64 E-value=0.0014 Score=70.92 Aligned_cols=37 Identities=32% Similarity=0.588 Sum_probs=33.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccc--eeccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKSE 463 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd--fy~~~ 463 (770)
+|.|+||+|||||+|+..|++.++..+||.|+ +|+.-
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l 39 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGM 39 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeec
Confidence 47899999999999999999999999999998 57763
No 252
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.63 E-value=0.0028 Score=60.95 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=26.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
....+|.+.|+.|||||||++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445689999999999999999999999743
No 253
>COG4639 Predicted kinase [General function prediction only]
Probab=96.63 E-value=0.0023 Score=62.63 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=28.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+.+|.+.|++||||||+++... +.+.++|+|++-.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~ 36 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRL 36 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHH
Confidence 4578899999999999998754 3677889998865
No 254
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.62 E-value=0.0022 Score=68.79 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----CccccccceeccccccccCccccccccHHHHHHH-
Q 004177 411 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKN- 484 (770)
Q Consensus 411 ~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~- 484 (770)
+.+++..+....+++.+|||+|++|+|||||...|...|. +.||+.|==-- + .-+++ |-+-
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp------~---TGGsi----LGDRi 103 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP------F---TGGSI----LGDRI 103 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC------C---CCccc----cccHh
Confidence 3455666666788999999999999999999999998872 44554441100 0 00111 0000
Q ss_pred -HHHHhcCCCccccccccccCccC---C-----ccce--eeccCccEEEEEccccch--hhhhhcCCeEEEEEcC
Q 004177 485 -ISDIRNGRRTKVPIFDLETGARS---G-----FKEL--EVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGG 546 (770)
Q Consensus 485 -L~~L~~g~~v~~P~yD~s~g~r~---~-----~~~~--~~~~~~~VVIvEG~~~l~--~~l~~~lD~~I~Vd~~ 546 (770)
++.+... --.|-.+...|- + ...+ .-..+.|+||+|-.-++. -.+.++.|..+++..|
T Consensus 104 RM~~~~~~----~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 104 RMQRLAVD----PGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred hHHhhccC----CCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 0111111 111222221111 0 0011 113468999999999986 5688999999999765
No 255
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0021 Score=64.10 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=33.6
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccceec
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 461 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L---~--~~vis~Ddfy~ 461 (770)
+..++.+|=++|.|||||||+|.+|.+.| | +.++++|+.-+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 45678999999999999999999999988 3 45677776644
No 256
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.62 E-value=0.0013 Score=67.56 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999997654
No 257
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.61 E-value=0.0013 Score=80.68 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=36.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 463 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~ 463 (770)
.++|+|.||+||||||+++.|+..|+..+++++.+|+.-
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 469999999999999999999999999999999999873
No 258
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.60 E-value=0.0015 Score=66.92 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.58 E-value=0.0016 Score=67.91 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||++.|+..+.+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999997654
No 260
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.57 E-value=0.0016 Score=67.18 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997654
No 261
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0016 Score=67.97 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3458999999999999999999987653
No 262
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.55 E-value=0.0016 Score=67.11 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997654
No 263
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.55 E-value=0.0016 Score=67.84 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3458999999999999999999987653
No 264
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0016 Score=66.76 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987653
No 265
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0016 Score=68.00 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987754
No 266
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.52 E-value=0.0018 Score=65.28 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.--+++|.||||||||||++.|+..+.+. ++...+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 59 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWD 59 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEEC
Confidence 34589999999999999999999977544 4444443
No 267
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.52 E-value=0.0018 Score=66.32 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999987643
No 268
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.51 E-value=0.0018 Score=66.18 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||.+.|+..+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999997653
No 269
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0017 Score=67.01 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||++.|+..+.+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987644
No 270
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.51 E-value=0.0018 Score=65.89 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999997754
No 271
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.50 E-value=0.0018 Score=66.68 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999987653
No 272
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=96.50 E-value=0.00023 Score=78.34 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.5
Q ss_pred eeCCCCccHHHHHHHHHHHhCC
Q 004177 430 IGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 430 I~GpsGSGKTTla~~La~~L~~ 451 (770)
|.||||||||||++.|+..+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p 22 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP 22 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC
Confidence 5799999999999999997653
No 273
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0018 Score=66.29 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.||||||||||++.|+..+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 274
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.49 E-value=0.0021 Score=66.74 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3469999999999999999999997653
No 275
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.48 E-value=0.0019 Score=66.26 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997653
No 276
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.48 E-value=0.0017 Score=66.59 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3458999999999999999999987654
No 277
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.47 E-value=0.0019 Score=66.16 Aligned_cols=28 Identities=32% Similarity=0.333 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997653
No 278
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.46 E-value=0.002 Score=66.62 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 279
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.002 Score=67.08 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997753
No 280
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0019 Score=67.56 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999997643
No 281
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.45 E-value=0.002 Score=67.48 Aligned_cols=28 Identities=36% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--+++|.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3458999999999999999999987643
No 282
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.45 E-value=0.0025 Score=66.07 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..-++||.|+||||||||++.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999987
No 283
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.45 E-value=0.0021 Score=65.17 Aligned_cols=35 Identities=37% Similarity=0.509 Sum_probs=27.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.-++||.|+||||||||++.|+..+.+. ++..++.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 60 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYK 60 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 4489999999999999999999976543 4444443
No 284
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0021 Score=66.36 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999997653
No 285
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.0022 Score=64.09 Aligned_cols=28 Identities=39% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987654
No 286
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.002 Score=65.99 Aligned_cols=25 Identities=36% Similarity=0.648 Sum_probs=22.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
++||.||||||||||++.|+..+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 8999999999999999999987653
No 287
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.39 E-value=0.0021 Score=73.09 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=23.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
-.+||+||||||||||++.|.....+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccC
Confidence 378999999999999999999876543
No 288
>PRK13973 thymidylate kinase; Provisional
Probab=96.38 E-value=0.0087 Score=61.84 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=23.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+|.|-|+.||||||.++.|++.|
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999998
No 289
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.38 E-value=0.00073 Score=78.13 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=63.9
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhccccccceee-ecCCCCCCCCC--------CCCCCeE
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQ--------LTESDCI 660 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~fv~~y~~~Y-l~~~~~~~~~~--------~~~~~~i 660 (770)
|-++|.|+..-..+..++..++..|+.+..++...+++ .+-.-|.... -..|.+..... ......+
T Consensus 207 a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~-----~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll 281 (539)
T COG1123 207 AVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS-----NPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLL 281 (539)
T ss_pred EEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh-----ccCCcccHHHHhhCCCcccccccccccccccccCcee
Confidence 55788888888888889999999998876665555443 3333344333 11122221111 1145678
Q ss_pred EEEEeCceeeE---Eee------eeccccCeeeccccceEE------ehhhHHHHH
Q 004177 661 RVRICEGRFAL---LIR------EPLREGNFIIQPKVDFDI------SISTVAGLL 701 (770)
Q Consensus 661 ~~r~~~~r~~l---~~~------~~~~~~~~~~~p~~~f~~------~~~~~~gl~ 701 (770)
+|++=..+|.+ .|. .-+.+=.|-++|--++=+ |.+|+|=.+
T Consensus 282 ~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i 337 (539)
T COG1123 282 SVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337 (539)
T ss_pred EeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHH
Confidence 89999999987 331 224455666666666654 355655443
No 290
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.38 E-value=0.0039 Score=72.37 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=32.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|.|+|++||||||+++.|++.++..++++|++...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 478999999999999999999999999999988643
No 291
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.38 E-value=0.0023 Score=65.81 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.|+||||||||++.|+..+.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 458999999999999999999987654
No 292
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0024 Score=67.82 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997643
No 293
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.36 E-value=0.0025 Score=65.30 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||.+.|+..+.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 294
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.36 E-value=0.0024 Score=66.61 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.|+||||||||++.|+..+.+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 295
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.36 E-value=0.0024 Score=66.74 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3458999999999999999999987643
No 296
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.35 E-value=0.0014 Score=62.07 Aligned_cols=26 Identities=42% Similarity=0.685 Sum_probs=23.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.-+++|.|++|||||||.+.|+....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45889999999999999999998764
No 297
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.35 E-value=0.0035 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=21.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..|+|++||||||+..++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999876
No 298
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.34 E-value=0.0026 Score=66.02 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.|+||||||||++.|+..+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999997753
No 299
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.34 E-value=0.0034 Score=62.51 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-+++|.||+|||||||++.|+..+.+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 55 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 34589999999999999999999976543
No 300
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0026 Score=65.16 Aligned_cols=27 Identities=41% Similarity=0.517 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 301
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.32 E-value=0.0028 Score=63.62 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-+++|.|+||||||||++.|+..+.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34588999999999999999999977543
No 302
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.32 E-value=0.0028 Score=64.53 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+....+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4568999999999999999999987643
No 303
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.31 E-value=0.003 Score=65.47 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
..-++||.||||||||||++.|+..+.+. ++..++..
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 75 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFYQPQ--GGQVLLDG 75 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECC
Confidence 45689999999999999999999976543 44444443
No 304
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0027 Score=63.17 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+--+++|.|+||||||||++.|+..+.+. ++...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~ 60 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVL 60 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEC
Confidence 34589999999999999999999876543 4444333
No 305
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.0027 Score=64.84 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-++||.|+||||||||++.|+..+.+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~ 54 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34589999999999999999999976543
No 306
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.29 E-value=0.0079 Score=64.65 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=50.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----CccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
+|.|+|.+||||||+|+.|+..+. +.+++-|++..... .+.+. .....+...+....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~----~y~~~--~~Ek~~R~~l~s~v------------ 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRN----DYADS--KKEKEARGSLKSAV------------ 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTS----SS--G--GGHHHHHHHHHHHH------------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchh----hhhch--hhhHHHHHHHHHHH------------
Confidence 677999999999999999999873 33444333331111 12111 11122222221100
Q ss_pred ccCccCCccceeeccCccEEEEEccccch---hh---hhhcC---CeEEEEEcChhHHHHHHHHhcc
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYALH---PE---IRKSL---DLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~---l~~~l---D~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
. .......+||+|+.+-+. -+ +.... -..||++++.+.++.|-..|..
T Consensus 65 ---~-------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 65 ---E-------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp ---H-------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred ---H-------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 0 001224799999988442 11 11222 2679999999999999987753
No 307
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.29 E-value=0.0033 Score=65.27 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4468999999999999999999986643
No 308
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.28 E-value=0.0026 Score=69.18 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.-++||.||||||||||++.|+..+.+.
T Consensus 18 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 46 (302)
T TIGR01188 18 EGEVFGFLGPNGAGKTTTIRMLTTLLRPT 46 (302)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34589999999999999999999977543
No 309
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.28 E-value=0.0031 Score=57.82 Aligned_cols=28 Identities=43% Similarity=0.600 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
...+.|.||+||||||+++.|+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3467889999999999999999988643
No 310
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.27 E-value=0.0029 Score=64.28 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997643
No 311
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0031 Score=67.48 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.||||||||||++.|+..+.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997754
No 312
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0033 Score=62.47 Aligned_cols=37 Identities=32% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.--+++|.||+|||||||.+.|+..+.+. ++..++..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g 63 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDG 63 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECC
Confidence 34588999999999999999999977543 45444443
No 313
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0032 Score=65.99 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999987643
No 314
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.27 E-value=0.0029 Score=64.62 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.||||||||||++.|+..+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3468999999999999999999987643
No 315
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.003 Score=66.21 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 316
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=96.24 E-value=0.0085 Score=59.83 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhh
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKF 631 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v 631 (770)
|-++-.++.|..+++.|..+.++-|+.+..|.-..+||.+-.
T Consensus 184 ~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL 225 (248)
T COG4138 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVL 225 (248)
T ss_pred EEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHH
Confidence 445667899999999999999999999999999999998754
No 317
>PRK10908 cell division protein FtsE; Provisional
Probab=96.23 E-value=0.003 Score=65.25 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4568999999999999999999987643
No 318
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0034 Score=64.48 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+ -++||.||||||||||++.|+..+.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35 79999999999999999999987653
No 319
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0031 Score=65.85 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3458999999999999999999987643
No 320
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0029 Score=67.43 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 346899999999999999999998764
No 321
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0034 Score=65.27 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 3458999999999999999999987653
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.0032 Score=61.01 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-+++|.|+||||||||++.|+..+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34588999999999999999999976543
No 323
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.21 E-value=0.0034 Score=65.51 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4568999999999999999999997753
No 324
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.20 E-value=0.0034 Score=64.36 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++||.|+||||||||++.|+..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999764
No 325
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.20 E-value=0.0035 Score=64.56 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+....+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4568999999999999999999987643
No 326
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.20 E-value=0.0034 Score=65.53 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCC
Confidence 4569999999999999999999997653
No 327
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.19 E-value=0.0035 Score=66.84 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.|+||||||||++.|+..+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997654
No 328
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0031 Score=67.71 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999997654
No 329
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.19 E-value=0.0034 Score=66.54 Aligned_cols=28 Identities=36% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997753
No 330
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.19 E-value=0.0038 Score=61.65 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+--+++|.||||||||||.+.|+..+.+. ++..++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~ 60 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVD 60 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEC
Confidence 34589999999999999999999876543 4444443
No 331
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0037 Score=66.80 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997653
No 332
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0033 Score=65.81 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3568999999999999999999997643
No 333
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0034 Score=65.88 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 55 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDP 55 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997643
No 334
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0036 Score=64.88 Aligned_cols=28 Identities=32% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--+++|.||||||||||++.|+..+.+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3457999999999999999999987643
No 335
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.17 E-value=0.0038 Score=64.39 Aligned_cols=28 Identities=39% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3468999999999999999999987644
No 336
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0036 Score=69.49 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 458999999999999999999997754
No 337
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0032 Score=67.28 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||++.|+..+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 458999999999999999999987653
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.16 E-value=0.0048 Score=62.60 Aligned_cols=41 Identities=39% Similarity=0.669 Sum_probs=34.2
Q ss_pred CCCC-EEEeeeCCCCccHHHHHHHHHHHh----CCccccccceecc
Q 004177 422 KGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS 462 (770)
Q Consensus 422 ~~~p-~iIGI~GpsGSGKTTla~~La~~L----~~~vis~Ddfy~~ 462 (770)
.++| +.|+|.||.|||||||...+.+.| +..+|..|.|...
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~ 54 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE 54 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence 3456 999999999999999998877766 5778889988854
No 339
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.16 E-value=0.0036 Score=64.93 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=23.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
--++||.|+||||||||++.|+..+.
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999998764
No 340
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.16 E-value=0.0038 Score=65.31 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.|+||||||||.+.|+..+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997654
No 341
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.16 E-value=0.0034 Score=65.27 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987653
No 342
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.16 E-value=0.0034 Score=67.10 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.||||||||||++.|+..+.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQIAP 59 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987653
No 343
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0038 Score=66.32 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997653
No 344
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.16 E-value=0.0035 Score=66.30 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3468999999999999999999997643
No 345
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.15 E-value=0.0036 Score=64.73 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||++.|+..+.+
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999997654
No 346
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0044 Score=65.20 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=30.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ 464 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~ 464 (770)
-++.+.|||||||||+.+.+...+.+. ++..+..+++
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~g~~ 64 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILIDGED 64 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC--CceEEECCee
Confidence 466689999999999999999988776 6777766644
No 347
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.15 E-value=0.0044 Score=68.15 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++.+|+++||+||||||++..|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357899999999999999999999987
No 348
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.15 E-value=0.0037 Score=65.14 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.||||||||||++.|+..+.+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4558999999999999999999997764
No 349
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.15 E-value=0.0038 Score=62.41 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++|+|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 350
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0037 Score=67.52 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.|+||||||||++.|+..+.+
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999997753
No 351
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0037 Score=66.56 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997653
No 352
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.13 E-value=0.0039 Score=64.07 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4568999999999999999999987643
No 353
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0037 Score=65.15 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 354
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.13 E-value=0.0042 Score=62.03 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.|++|||||||++.|+..+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3458999999999999999999997654
No 355
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.11 E-value=0.0038 Score=65.29 Aligned_cols=27 Identities=37% Similarity=0.486 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999998764
No 356
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.11 E-value=0.0042 Score=61.55 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-+++|.|+||||||||++.|+..+.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34589999999999999999999976543
No 357
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.11 E-value=0.0032 Score=64.98 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||.+.|+..+.+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 39 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAP 39 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 3468999999999999999999987643
No 358
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0037 Score=66.89 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 359
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.11 E-value=0.0018 Score=76.16 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--.++|.||||||||||++.|++.+.+
T Consensus 349 G~~~aivG~sGsGKSTL~~ll~g~~~~ 375 (547)
T PRK10522 349 GELLFLIGGNGSGKSTLAMLLTGLYQP 375 (547)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 457999999999999999999987654
No 360
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0042 Score=64.68 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3458999999999999999999997643
No 361
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.09 E-value=0.012 Score=55.95 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=57.1
Q ss_pred cEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccC--CCHHHHHHHH----HHhhhccccccC-CcccEEE
Q 004177 59 GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDL-HHAQIRI 131 (770)
Q Consensus 59 ~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er--~s~e~v~~~v----~p~~~~yI~P~k-~~ADiVI 131 (770)
+-+|+||.++-+- +.+..|+.||+++|.+++..|+..|+...| .+.+++.+++ .+.+..|+.|++ ..-|++|
T Consensus 66 ~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i 144 (147)
T cd02020 66 PGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVI 144 (147)
T ss_pred CCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEE
Confidence 3478899876442 235689999999999999999999985533 5888888765 577899999997 4456888
Q ss_pred eC
Q 004177 132 NN 133 (770)
Q Consensus 132 ~~ 133 (770)
++
T Consensus 145 ~~ 146 (147)
T cd02020 145 DT 146 (147)
T ss_pred eC
Confidence 64
No 362
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0038 Score=65.89 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3468999999999999999999997653
No 363
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0042 Score=66.47 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997653
No 364
>PRK06761 hypothetical protein; Provisional
Probab=96.09 E-value=0.0092 Score=64.43 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=28.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
.+|.|+|++||||||+++.|++.+....++.+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~ 38 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL 38 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEe
Confidence 57889999999999999999999875444444443
No 365
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.09 E-value=0.0042 Score=64.93 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=23.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.--++||.||||||||||++.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999874
No 366
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.08 E-value=0.0037 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 367899999999999999999764
No 367
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.08 E-value=0.0042 Score=65.39 Aligned_cols=27 Identities=41% Similarity=0.487 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998764
No 368
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0041 Score=67.21 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3458999999999999999999987754
No 369
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.07 E-value=0.0042 Score=67.07 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||++.|+..+.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 33 GKYYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 370
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.07 E-value=0.012 Score=59.98 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=57.7
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
.+++++|--.++...+..++|..|||++|.++++.|.+.|| +.+.+++..+.... .-+++.+..||+||.|+.+
T Consensus 107 ~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~---g~s~e~~~~ri~~Q--~~~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 107 NPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD---GLTEEEAEARINAQ--WPLEEKVKLADVVLDNSGD 180 (195)
T ss_pred CCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhC--CCHHHHHhhCCEEEECCCC
Confidence 45899999888887788899999999999999999999997 34567776665322 1244556889999998753
No 371
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.07 E-value=0.004 Score=67.79 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 56 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISP 56 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997654
No 372
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.06 E-value=0.0042 Score=66.64 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||++.|+..+.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGIYLP 57 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 458999999999999999999997754
No 373
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.06 E-value=0.0041 Score=65.60 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--+++|.|+||||||||++.|+..+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997653
No 374
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.06 E-value=0.0053 Score=62.96 Aligned_cols=26 Identities=38% Similarity=0.806 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
|+.|||+||+|||||||++.+.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999998764
No 375
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.05 E-value=0.0043 Score=66.25 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.||||||||||++.|+..+.+
T Consensus 38 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 38 EGQTLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999997754
No 376
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.05 E-value=0.0043 Score=63.96 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-+++|.|+||||||||++.|+..+.+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 377
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.04 E-value=0.0042 Score=65.54 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4458999999999999999999987643
No 378
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.04 E-value=0.0045 Score=64.22 Aligned_cols=27 Identities=37% Similarity=0.475 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 446899999999999999999998775
No 379
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.04 E-value=0.0044 Score=57.30 Aligned_cols=22 Identities=50% Similarity=0.505 Sum_probs=20.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMA 446 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La 446 (770)
-.+++|.||||||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999986
No 380
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.03 E-value=0.0099 Score=60.85 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=58.5
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
.+++|+|.-.++...+..++|..|||++|.++++.|.+.||- .+.+++..++.. +..+++.+..||+||.|+.+
T Consensus 103 ~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g---~s~e~a~~ri~~--Q~~~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 103 GKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDG---MKKEDVLARIAS--QLPITEKLKRADYIVRNDGN 176 (196)
T ss_pred CCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHHHHHHH--cCCHHHHHHhCCEEEECCCC
Confidence 358888888887766778899999999999999999999953 466777777633 22456667889999998753
No 381
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0045 Score=66.60 Aligned_cols=29 Identities=34% Similarity=0.381 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.-++||.||||||||||++.|+..+.+.
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 34589999999999999999999877543
No 382
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0043 Score=63.43 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-+++|.|+||||||||++.|+..+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 345899999999999999999999865
No 383
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.02 E-value=0.0039 Score=63.26 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=57.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc--cccccceeccc---cc-------cccCc--------------cccccccHHH
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKSE---QV-------KDFKY--------------DDFSSLDLSL 480 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~--vis~Ddfy~~~---~~-------~~~n~--------------d~p~t~D~~l 480 (770)
.|.+.|||||||||+.+.++....+. .+..++--... +. .-+.| +-+.+...+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~ 112 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI 112 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45578999999999999999976533 11222111100 00 00011 1122223344
Q ss_pred HHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCC
Q 004177 481 LSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD 538 (770)
Q Consensus 481 l~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD 538 (770)
..+.+....-++.-..-+|..|.|.|+ .+-+ ++.+.+|.-+++.+++...+|
T Consensus 113 a~q~l~~VgL~~~~~~~i~qLSGGmrQ---RvGi---ARALa~eP~~LlLDEPfgAlD 164 (259)
T COG4525 113 AHQMLALVGLEGAEHKYIWQLSGGMRQ---RVGI---ARALAVEPQLLLLDEPFGALD 164 (259)
T ss_pred HHHHHHHhCcccccccceEeecchHHH---HHHH---HHHhhcCcceEeecCchhhHH
Confidence 555555555555556667788887665 1111 456666666666666555555
No 384
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.01 E-value=0.0046 Score=65.43 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALRP 53 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3568999999999999999999997653
No 385
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.01 E-value=0.0054 Score=62.72 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--+++|.|++|||||||++.|+..+.+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 60 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3458999999999999999999987643
No 386
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0048 Score=66.39 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.-++||.|+||||||||.+.|+..+.+.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 60 (279)
T PRK13650 32 QGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34589999999999999999999977543
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.00 E-value=0.0061 Score=69.35 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=31.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L---~--~~vis~Ddfy 460 (770)
.+|.+|+++|++||||||++..||..+ | +.++++|.|-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 457899999999999999999999877 2 5567777654
No 388
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.00 E-value=0.0049 Score=62.86 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.||+|||||||++.|+..+.+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 4568999999999999999999997653
No 389
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.00 E-value=0.0051 Score=67.86 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||++.|+..+.+
T Consensus 41 Ge~~~IvG~sGsGKSTLl~~l~gl~~p 67 (327)
T PRK11308 41 GKTLAVVGESGCGKSTLARLLTMIETP 67 (327)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCC
Confidence 458999999999999999999997754
No 390
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0057 Score=64.34 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
--++||.|+||||||||++.|+..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45899999999999999999998753
No 391
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.99 E-value=0.0049 Score=62.06 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMA 446 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La 446 (770)
+.-+++|.||||||||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999885
No 392
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.99 E-value=0.0087 Score=56.76 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
...-+|.+.|+-|||||||++.++..+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45679999999999999999999999973
No 393
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.99 E-value=0.0047 Score=60.69 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=20.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
|+|+|+.|||||||++.|++. |..++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999998 87654
No 394
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.99 E-value=0.0046 Score=64.71 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.|+||||||||++.|+..+.+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p 73 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3468999999999999999999987643
No 395
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.98 E-value=0.0048 Score=66.27 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--++||.|+||||||||++.|+..+.+.
T Consensus 29 ~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~ 57 (277)
T PRK13652 29 RNSRIAVIGPNGAGKSTLFRHFNGILKPT 57 (277)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34589999999999999999999976543
No 396
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.97 E-value=0.0087 Score=66.50 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+..++++.||+|||||||+++|+..++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999999885
No 397
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.97 E-value=0.0058 Score=69.78 Aligned_cols=38 Identities=39% Similarity=0.503 Sum_probs=33.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~-vis~Ddfy 460 (770)
.+|.+|.+.|++||||||++..|+..++.. +++.|.+-
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHH
Confidence 469999999999999999999999999976 67888753
No 398
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.97 E-value=0.0052 Score=67.92 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+--++||.|+||||||||++.|+..+.+. ++..++.+
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~--~G~I~~~G 82 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVKAT--DGEVAWLG 82 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC--CcEEEECC
Confidence 34589999999999999999999977543 44444443
No 399
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0048 Score=66.17 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (275)
T PRK13639 27 KGEMVALLGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987643
No 400
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.005 Score=62.37 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.--+++|.||||||||||++.|+...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999753
No 401
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.0051 Score=66.46 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||.+.|+..+.+
T Consensus 33 Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 33 GSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999997754
No 402
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.95 E-value=0.0052 Score=62.70 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.|+||||||||.+.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3468999999999999999999987643
No 403
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.94 E-value=0.0052 Score=63.54 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++||.||||||||||++.|+..+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999999764
No 404
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.94 E-value=0.007 Score=65.93 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=32.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccee
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 460 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L-----~~~vis~Ddfy 460 (770)
..+.+.+|+|+|++|||||||+..|+..+ .+.+++.|...
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45678999999999999999999999876 24567777543
No 405
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.93 E-value=0.0054 Score=65.84 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||.+.|+..+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (274)
T PRK13644 28 GEYIGIIGKNGSGKSTLALHLNGLLRP 54 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 458999999999999999999997654
No 406
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.93 E-value=0.0075 Score=60.88 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
...++|+||+||||||+++.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45788999999999999999998775
No 407
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.92 E-value=0.0057 Score=63.05 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-+++|.||||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3458999999999999999999987653
No 408
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.91 E-value=0.0055 Score=68.59 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 19 Gei~~l~G~sGsGKSTLLr~L~Gl~~p~ 46 (363)
T TIGR01186 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPT 46 (363)
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 4588999999999999999999987543
No 409
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0054 Score=64.69 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..++
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345899999999999999999998653
No 410
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.90 E-value=0.0068 Score=61.35 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=23.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999873
No 411
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.90 E-value=0.0054 Score=62.28 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+.-+++|.||+|||||||.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999977
No 412
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.0068 Score=65.50 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=29.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccee
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYF 460 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L----~---~~vis~Ddfy 460 (770)
++.+|+++||+||||||++..|+..+ + +.++++|.|.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 46799999999999999999999765 2 3466777654
No 413
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0048 Score=64.99 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.||||||||||++.|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 446899999999999999999999764
No 414
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0055 Score=66.25 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.|+||||||||++.|+..+.+
T Consensus 31 ~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 31 KGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 3458999999999999999999997754
No 415
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.0051 Score=64.88 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 3458999999999999999999997643
No 416
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0056 Score=66.90 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--+++|.|+||||||||++.|+..+.+.
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~ 60 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNALLLPD 60 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34589999999999999999999987543
No 417
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0055 Score=64.81 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.|+||||||||++.|+..+.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (255)
T PRK11231 27 TGKITALIGPNGCGKSTLLKCFARLLTP 54 (255)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3558999999999999999999987653
No 418
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.86 E-value=0.0053 Score=64.60 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.|+||||||||++.|+..+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3458999999999999999999987643
No 419
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.86 E-value=0.0058 Score=64.70 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999999999999999999764
No 420
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=95.85 E-value=0.006 Score=63.01 Aligned_cols=27 Identities=41% Similarity=0.557 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.|+||||||||++.|+..+.+
T Consensus 31 G~~~~I~G~nGsGKStLl~~l~G~~~~ 57 (220)
T TIGR02982 31 GEIVILTGPSGSGKTTLLTLIGGLRSV 57 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 421
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.0062 Score=67.02 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.|+||||||||++.|+..+.+.
T Consensus 52 Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~ 79 (320)
T PRK13631 52 NKIYFIIGNSGSGKSTLVTHFNGLIKSK 79 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4589999999999999999999977543
No 422
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.84 E-value=0.017 Score=53.59 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=22.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...+.|.||+|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4466689999999999999999987
No 423
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0067 Score=66.90 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++||.|+||||||||++.|+..+.
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 345899999999999999999999875
No 424
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0061 Score=69.05 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..-+++|.||||||||||.+.|+..+.+.
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~ 81 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 34589999999999999999999977543
No 425
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.82 E-value=0.0063 Score=64.41 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.|+||||||||++.|+..+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4458999999999999999999987654
No 426
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.0055 Score=64.97 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999764
No 427
>PRK13975 thymidylate kinase; Provisional
Probab=95.82 E-value=0.0078 Score=60.71 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=24.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+|.|.|+.||||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58899999999999999999999984
No 428
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.81 E-value=0.006 Score=65.27 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 49 ~Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 49 EGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4458999999999999999999997643
No 429
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0063 Score=65.60 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.|+||||||||++.|+..+.+
T Consensus 31 ~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p 58 (283)
T PRK13636 31 KGEVTAILGGNGAGKSTLFQNLNGILKP 58 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3458999999999999999999997753
No 430
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=95.81 E-value=0.0035 Score=72.16 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+--+.++.|-||||||||.+.|+..+.+. ++..++.
T Consensus 33 ~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~~~ 68 (500)
T COG1129 33 PGEVHALLGENGAGKSTLMKILSGVYPPD--SGEILID 68 (500)
T ss_pred CceEEEEecCCCCCHHHHHHHHhCcccCC--CceEEEC
Confidence 45699999999999999999999987654 4444443
No 431
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.81 E-value=0.0062 Score=64.17 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=22.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..-++||.|+||||||||++.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999985
No 432
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0064 Score=63.58 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.|+||||||||++.|+..+.+
T Consensus 24 ~Ge~~~i~G~nG~GKStLl~~l~G~~~p 51 (235)
T cd03299 24 RGDYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4568999999999999999999987654
No 433
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0058 Score=65.11 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||.+.|+..+.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 59 (265)
T PRK10253 32 DGHFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3458999999999999999999997643
No 434
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0068 Score=59.18 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=27.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
--+++|.|++|||||||++.|+..+.+. ++..++..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~ 60 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDG 60 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECC
Confidence 3588999999999999999999876543 44444443
No 435
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0065 Score=64.42 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345899999999999999999998764
No 436
>PLN02199 shikimate kinase
Probab=95.79 E-value=0.01 Score=64.31 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=33.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
...|.++|..||||||+++.|++.++..++++|.+...
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 34667899999999999999999999999999988765
No 437
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=95.79 E-value=0.0062 Score=67.88 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
-+++|.||||||||||++.|+..+.+
T Consensus 24 ei~~l~G~nGsGKSTLl~~iaGl~~p 49 (354)
T TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRP 49 (354)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 48999999999999999999997753
No 438
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.0077 Score=67.61 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=29.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
++|.+|+++||+||||||++..|+..+. +.++++|.|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3568999999999999999999998762 345566654
No 439
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0058 Score=64.87 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345899999999999999999998764
No 440
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.76 E-value=0.0059 Score=64.97 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4568999999999999999999998754
No 441
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.0081 Score=65.35 Aligned_cols=41 Identities=39% Similarity=0.679 Sum_probs=36.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--ecccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQ 464 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~~~ 464 (770)
.+.+|.|.||.|||||-++-.||+.++..|||+|+. |+.-+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~md 44 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLD 44 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCc
Confidence 367888999999999999999999999999999976 66533
No 442
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0072 Score=64.93 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.|+||||||||++.|+..+.+
T Consensus 32 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (277)
T PRK13642 32 KGEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3458999999999999999999997754
No 443
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.74 E-value=0.0072 Score=63.27 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++||.|+||||||||.+.|+..+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998764
No 444
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.74 E-value=0.0079 Score=66.41 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 345899999999999999999999774
No 445
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.73 E-value=0.0077 Score=61.70 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+++|+||||||||||++.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68889999999999999999864
No 446
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.73 E-value=0.0082 Score=63.67 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
+--++||.|++|||||||++.|+..+.+. ++..++
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~i 80 (257)
T cd03288 46 PGQKVGICGRTGSGKSSLSLAFFRMVDIF--DGKIVI 80 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcccCCC--CCeEEE
Confidence 44689999999999999999999976433 444444
No 447
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.0071 Score=63.74 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..-++||.|+||||||||++.|+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhh
Confidence 34589999999999999999999753
No 448
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0066 Score=65.44 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-++||.||||||||||++.|+..+.+
T Consensus 32 ~Ge~~~I~G~nGaGKSTLl~~l~G~~~p 59 (282)
T PRK13640 32 RGSWTALIGHNGSGKSTISKLINGLLLP 59 (282)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcccCC
Confidence 3468999999999999999999997743
No 449
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0065 Score=63.98 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345899999999999999999998764
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.72 E-value=0.008 Score=61.44 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+|.|+||+||||||+++.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 678999999999999999888764
No 451
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.70 E-value=0.0072 Score=63.42 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..-+++|.|+||||||||++.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34589999999999999999999974
No 452
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.70 E-value=0.0082 Score=62.12 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=22.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
-++||.|||||||||+.++|...+|
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~~G 50 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFVFG 50 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999986555
No 453
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0067 Score=63.90 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 345899999999999999999999764
No 454
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.69 E-value=0.0073 Score=64.57 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-+++|.||||||||||++.|+..+.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998764
No 455
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.0091 Score=64.21 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L---~--~~vis~Ddf 459 (770)
+++.+|+++||+||||||++..|+..+ | +.++++|-|
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 457899999999999999999999876 2 446677764
No 456
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.007 Score=63.85 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345899999999999999999999763
No 457
>PRK14974 cell division protein FtsY; Provisional
Probab=95.68 E-value=0.0097 Score=65.85 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=24.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++|.+|+++|++||||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999876
No 458
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0077 Score=65.22 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.|+||||||||++.|+..+.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 33 GSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 458999999999999999999987654
No 459
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.0075 Score=64.87 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.|+||||||||.+.|+..+.+
T Consensus 35 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 35 KGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987653
No 460
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.0074 Score=64.39 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.-++||.|+||||||||++.|+..+
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4589999999999999999999864
No 461
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.66 E-value=0.0088 Score=63.23 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+-+.+|.|||||||||++++|...|+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568889999999999999999998864
No 462
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.66 E-value=0.0084 Score=66.26 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=29.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc-cccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~-vis~Ddfy~~ 462 (770)
--++||.|+||||||||++.|+..+.+. +.++..++.+
T Consensus 42 Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G 80 (330)
T PRK09473 42 GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNG 80 (330)
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECC
Confidence 4589999999999999999999987542 1255555544
No 463
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.66 E-value=0.017 Score=64.33 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=30.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
-..|+++||-||+|||||.+|++++..+++..+.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~v 179 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVM 179 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE
Confidence 46799999999999999999999999999764433
No 464
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.008 Score=64.16 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.--++||.|+||||||||++.|+..+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345899999999999999999999765
No 465
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.63 E-value=0.0079 Score=65.48 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||.+.|+..+.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~ 54 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPP 54 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3458999999999999999999987653
No 466
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0067 Score=65.15 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||++.|+..+.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999987643
No 467
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.0084 Score=63.10 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--++||.||||||||||++.|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 345899999999999999999998765
No 468
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.008 Score=64.37 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|++.+.
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 346899999999999999999999764
No 469
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.0072 Score=63.84 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--+++|.|+||||||||++.|+..+.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccC
Confidence 458999999999999999999987653
No 470
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.62 E-value=0.0082 Score=64.89 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=24.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..-++||.|+||||||||++.|+..+.+
T Consensus 62 ~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4468999999999999999999987643
No 471
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.62 E-value=0.0084 Score=62.73 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+-+.+|.||||||||||.++|...++
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 55889999999999999999997664
No 472
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.61 E-value=0.0072 Score=63.80 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.||||||||||++.|+..++
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcccc
Confidence 445899999999999999999998654
No 473
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.60 E-value=0.0099 Score=60.75 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=22.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+++|.||||||||||+++|...++
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~ 47 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLG 47 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhc
Confidence 889999999999999999998764
No 474
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.60 E-value=0.0093 Score=60.83 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..-+++|.|+||||||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999863
No 475
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.0084 Score=63.23 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+....
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 355899999999999999999998753
No 476
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.008 Score=64.19 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 445899999999999999999999764
No 477
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.58 E-value=0.0077 Score=63.43 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 445899999999999999999998653
No 478
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.0082 Score=63.29 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 345899999999999999999998654
No 479
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.57 E-value=0.0037 Score=73.06 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-.|||+|+||||||||.+.|+..+.
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 446899999999999999999998773
No 480
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.008 Score=63.39 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.||||||||||++.|+..+.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345889999999999999999999764
No 481
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.0093 Score=62.18 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.|+||||||||.+.|+..+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3468999999999999999999997653
No 482
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.025 Score=54.21 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=67.4
Q ss_pred eeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh---hHHHHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCC--
Q 004177 191 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-- 265 (770)
Q Consensus 191 lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---~~~~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~l-- 265 (770)
+|||..|.+.+||.||... + -+|.|||-.+ .+.++|. +-+...++|+|.....+|++-.+|...|-
T Consensus 39 VRVRi~g~~A~LTiK~~~~---~---~~R~EfEY~iPl~DA~e~l~---~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~ 109 (156)
T COG2954 39 VRVRIVGDRAYLTIKGGAS---G---LSRSEFEYEIPLADAEEMLT---TACGRVIEKTRYPVRHGGFLWEVDVFLGDNA 109 (156)
T ss_pred EEEEEecceEEEEEEcccc---c---eeeeeeeecccccCHHHHHH---HhcchheeeeEeeeeeCCEEEEEeeecCccc
Confidence 4999999999999996542 3 5889999999 4555544 34555899999999999999999999643
Q ss_pred CCCeEEEEecChhHHHHHHHHcCC
Q 004177 266 DETFMVLRGTNRKTVGAEALRMGI 289 (770)
Q Consensus 266 G~~FvEIE~~~~~~i~~~a~~Lgl 289 (770)
|-.-.|+|-+++.+-..+-.-||-
T Consensus 110 gLvvAEvEl~~e~~~~~lP~WLGr 133 (156)
T COG2954 110 GLVVAEVELPDENADFDLPDWLGR 133 (156)
T ss_pred ceEEEEEEcCccccCCcCccccCc
Confidence 444578888765554455555555
No 483
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.0075 Score=63.98 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-++||.|+||||||||++.|+..+.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998664
No 484
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.55 E-value=0.0079 Score=63.89 Aligned_cols=28 Identities=32% Similarity=0.578 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.-+++|.||||||||||++.|+..+.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3458999999999999999999987643
No 485
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.54 E-value=0.01 Score=64.66 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=32.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccce--ecccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQ 464 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~~~ 464 (770)
.+|.|+||+|||||.||-.||+. +..+||.|+. |+.-+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ld 44 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFD 44 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCc
Confidence 48889999999999999999998 5689999976 76533
No 486
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.54 E-value=0.012 Score=58.34 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=23.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+|+|+|++|||||||+.+|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999874
No 487
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.54 E-value=0.01 Score=70.35 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=24.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--.++|.|+||||||||++.|++.+.+.
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~p~ 396 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYDID 396 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 3478999999999999999999987543
No 488
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.53 E-value=0.0086 Score=72.37 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.--.|||+|.||||||||++.|.+.+.+.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44589999999999999999999977553
No 489
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.53 E-value=0.0082 Score=63.25 Aligned_cols=25 Identities=36% Similarity=0.591 Sum_probs=22.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.-++||.||||||||||++.|+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccc
Confidence 4589999999999999999999853
No 490
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.012 Score=63.98 Aligned_cols=40 Identities=35% Similarity=0.509 Sum_probs=33.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceeccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE 463 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~~~ 463 (770)
+--++||+|-|||||||++++|...+. ..+.++...|.+.
T Consensus 30 ~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 30 KGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 456999999999999999999999986 3466777777775
No 491
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.49 E-value=0.011 Score=57.34 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+|+|+|+++||||||++.|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 492
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.0099 Score=63.35 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.--++||.|+||||||||++.|+..++
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346899999999999999999998654
No 493
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.48 E-value=0.0071 Score=63.78 Aligned_cols=21 Identities=33% Similarity=0.675 Sum_probs=18.8
Q ss_pred eeCCCCccHHHHHHHHHHHhC
Q 004177 430 IGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 430 I~GpsGSGKTTla~~La~~L~ 450 (770)
|+||.||||||+++.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999884
No 494
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.0089 Score=63.00 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.-++||.|+||||||||++.|+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4589999999999999999999864
No 495
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.0086 Score=64.05 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.--++||.||||||||||++.|+..+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345899999999999999999998754
No 496
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.0087 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-+++|.|+||||||||++.|+..+.
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl~~ 71 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRMND 71 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345899999999999999999998654
No 497
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.45 E-value=0.0094 Score=62.77 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.|+||||||||++.|+..+.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999999764
No 498
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.014 Score=57.57 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=28.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
-++-|+|+|++|+||||++.++++.|.-.-+..-.|+-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 46789999999999999999999988432223344443
No 499
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.44 E-value=0.011 Score=66.16 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+|.+|+|+|++|||||||+..|...|+
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998885
No 500
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.41 E-value=0.011 Score=58.72 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.++||+|.++||||||+..|...|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 56999999999999999999998884
Done!