Query 004177
Match_columns 770
No_of_seqs 628 out of 3554
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghx_A Adenylate cyclase CYAB; 99.9 6.4E-24 2.2E-28 211.4 13.2 132 157-303 30-178 (179)
2 3tqc_A Pantothenate kinase; bi 99.9 2.6E-24 8.9E-29 232.6 10.8 179 422-601 89-312 (321)
3 1yem_A Hypothetical protein; s 99.9 1.8E-23 6E-28 208.2 12.2 138 156-309 28-178 (179)
4 2een_A Hypothetical protein PH 99.9 3.3E-23 1.1E-27 206.8 12.3 141 158-308 21-180 (183)
5 3n10_A Adenylate cyclase 2; CY 99.8 5.2E-21 1.8E-25 190.2 14.7 128 160-302 34-177 (179)
6 2dc4_A PH1012 protein, 165AA l 99.8 1.2E-20 4E-25 185.2 13.3 131 158-304 22-165 (165)
7 1a7j_A Phosphoribulokinase; tr 99.8 1.9E-20 6.4E-25 200.0 10.2 174 423-597 3-215 (290)
8 2aca_A Putative adenylate cycl 99.8 2.5E-20 8.7E-25 187.0 9.3 135 157-306 32-183 (189)
9 1uj2_A Uridine-cytidine kinase 99.8 1.1E-19 3.6E-24 189.4 14.4 172 422-595 19-211 (252)
10 1sq5_A Pantothenate kinase; P- 99.8 7.5E-20 2.6E-24 196.7 12.8 176 423-599 78-298 (308)
11 1odf_A YGR205W, hypothetical 3 99.8 1.3E-19 4.4E-24 193.5 10.6 178 421-599 27-278 (290)
12 3asz_A Uridine kinase; cytidin 99.8 2E-18 6.9E-23 173.9 13.9 175 423-599 4-189 (211)
13 3aez_A Pantothenate kinase; tr 99.8 2E-18 6.8E-23 186.2 14.7 178 422-600 87-302 (312)
14 3c8u_A Fructokinase; YP_612366 99.7 4.9E-18 1.7E-22 171.7 11.7 172 422-596 19-207 (208)
15 2ga8_A Hypothetical 39.9 kDa p 99.7 4.6E-18 1.6E-22 185.1 10.7 140 453-595 158-349 (359)
16 1rz3_A Hypothetical protein rb 99.7 3.1E-17 1.1E-21 165.0 9.7 168 422-597 19-200 (201)
17 2jeo_A Uridine-cytidine kinase 99.7 3E-16 1E-20 162.6 15.5 172 423-597 23-215 (245)
18 3tqc_A Pantothenate kinase; bi 99.7 1.1E-16 3.7E-21 173.1 9.8 127 10-136 148-310 (321)
19 2ga8_A Hypothetical 39.9 kDa p 99.6 1.5E-16 5E-21 173.3 5.6 124 9-133 182-350 (359)
20 3bhd_A Thtpase, thiamine triph 99.6 5.1E-15 1.7E-19 153.3 11.1 140 158-306 45-220 (234)
21 2grj_A Dephospho-COA kinase; T 99.4 7.8E-14 2.7E-18 140.1 6.4 148 423-598 10-171 (192)
22 3v85_A CYTH-like phosphatase; 99.4 5.4E-13 1.8E-17 135.7 9.9 129 157-293 22-195 (210)
23 2qt1_A Nicotinamide riboside k 99.3 3.7E-12 1.3E-16 127.8 11.9 163 421-597 17-189 (207)
24 1sq5_A Pantothenate kinase; P- 99.3 2.9E-12 1E-16 137.5 10.4 128 9-136 135-298 (308)
25 3tj7_A GBAA_1210 protein; stru 99.3 9.4E-12 3.2E-16 125.2 12.3 119 163-293 32-178 (195)
26 1a7j_A Phosphoribulokinase; tr 99.3 2.4E-12 8.1E-17 137.3 7.3 121 9-129 65-204 (290)
27 4i1u_A Dephospho-COA kinase; s 99.3 2.1E-12 7.1E-17 131.4 6.3 160 422-597 6-184 (210)
28 2gfg_A BH2851; antiparallel ba 99.3 2.2E-11 7.5E-16 122.3 12.4 114 166-291 35-176 (193)
29 2f6r_A COA synthase, bifunctio 99.3 2.4E-12 8.4E-17 136.4 5.0 163 422-597 72-252 (281)
30 1uj2_A Uridine-cytidine kinase 99.2 2E-11 6.9E-16 126.8 11.3 124 9-133 83-212 (252)
31 3c8u_A Fructokinase; YP_612366 99.2 2.9E-11 1E-15 121.9 10.1 121 11-133 77-207 (208)
32 3d3q_A TRNA delta(2)-isopenten 99.2 2.3E-12 8E-17 139.8 -0.4 153 425-586 7-164 (340)
33 3aez_A Pantothenate kinase; tr 99.1 7.9E-11 2.7E-15 126.8 10.5 126 11-136 147-301 (312)
34 1jjv_A Dephospho-COA kinase; P 99.1 2.6E-11 8.9E-16 121.4 5.4 158 425-598 2-177 (206)
35 1rz3_A Hypothetical protein rb 99.1 6E-11 2E-15 119.0 5.7 117 14-134 81-200 (201)
36 1odf_A YGR205W, hypothetical 3 99.1 9.8E-11 3.3E-15 124.8 6.6 124 12-136 97-278 (290)
37 2if2_A Dephospho-COA kinase; a 99.0 1E-10 3.5E-15 116.8 4.7 156 426-597 2-175 (204)
38 1uf9_A TT1252 protein; P-loop, 99.0 2.3E-10 7.7E-15 113.5 5.2 130 422-558 5-146 (203)
39 1vht_A Dephospho-COA kinase; s 99.0 5.1E-10 1.7E-14 113.1 7.2 159 424-598 3-179 (218)
40 3asz_A Uridine kinase; cytidin 99.0 2.4E-09 8.4E-14 107.3 11.8 124 11-135 59-188 (211)
41 2jeo_A Uridine-cytidine kinase 99.0 3.5E-09 1.2E-13 109.3 12.7 126 10-136 87-217 (245)
42 1cke_A CK, MSSA, protein (cyti 98.9 2.4E-09 8.2E-14 108.3 7.6 38 425-462 5-42 (227)
43 3ake_A Cytidylate kinase; CMP 98.9 3E-09 1E-13 105.8 7.8 124 427-559 4-158 (208)
44 3lw7_A Adenylate kinase relate 98.8 5.3E-09 1.8E-13 100.2 7.0 155 426-598 2-161 (179)
45 1q3t_A Cytidylate kinase; nucl 98.8 1.4E-08 4.9E-13 104.1 9.8 168 423-597 14-217 (236)
46 3t61_A Gluconokinase; PSI-biol 98.8 2.1E-08 7E-13 100.0 10.6 141 424-597 17-163 (202)
47 1yem_A Hypothetical protein; s 98.7 3.2E-08 1.1E-12 98.2 10.9 111 658-770 50-171 (179)
48 1tev_A UMP-CMP kinase; ploop, 98.7 1.7E-08 5.9E-13 98.8 7.9 126 424-559 2-136 (196)
49 2fbl_A Hypothetical protein NE 98.7 4E-08 1.4E-12 95.0 10.0 94 164-278 22-122 (153)
50 4e22_A Cytidylate kinase; P-lo 98.7 2.9E-08 1E-12 103.2 9.2 39 423-461 25-63 (252)
51 3r20_A Cytidylate kinase; stru 98.7 8.3E-09 2.9E-13 106.5 4.7 172 423-597 7-210 (233)
52 3kb2_A SPBC2 prophage-derived 98.6 3.1E-08 1.1E-12 95.2 6.8 145 426-597 2-149 (173)
53 2h92_A Cytidylate kinase; ross 98.6 2.6E-08 9E-13 100.3 5.6 38 425-462 3-40 (219)
54 4eun_A Thermoresistant glucoki 98.6 1.9E-07 6.6E-12 93.1 10.3 40 423-462 27-66 (200)
55 1qf9_A UMP/CMP kinase, protein 98.6 9.6E-08 3.3E-12 93.3 7.8 120 424-559 5-133 (194)
56 3tlx_A Adenylate kinase 2; str 98.5 2.2E-07 7.7E-12 95.9 10.1 123 421-558 25-157 (243)
57 3vaa_A Shikimate kinase, SK; s 98.5 1.2E-07 4.3E-12 94.4 7.1 39 424-462 24-62 (199)
58 1knq_A Gluconate kinase; ALFA/ 98.5 5.2E-07 1.8E-11 87.5 11.1 39 423-461 6-44 (175)
59 2bwj_A Adenylate kinase 5; pho 98.5 9.6E-08 3.3E-12 94.2 5.5 121 424-559 11-138 (199)
60 1ukz_A Uridylate kinase; trans 98.5 2.9E-07 1E-11 91.5 8.9 126 422-559 12-143 (203)
61 2pt5_A Shikimate kinase, SK; a 98.5 1E-07 3.5E-12 91.6 4.8 36 427-462 2-37 (168)
62 2iyv_A Shikimate kinase, SK; t 98.4 1E-07 3.5E-12 93.2 4.0 37 426-462 3-39 (184)
63 2dc4_A PH1012 protein, 165AA l 98.4 1.3E-06 4.3E-11 85.1 10.5 111 658-770 42-163 (165)
64 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-06 4.3E-11 86.6 10.5 27 424-450 6-32 (205)
65 2c95_A Adenylate kinase 1; tra 98.4 6.4E-07 2.2E-11 88.0 8.2 120 424-558 8-134 (196)
66 3ghx_A Adenylate cyclase CYAB; 98.4 6.9E-07 2.4E-11 88.5 8.4 109 655-770 55-177 (179)
67 1zuh_A Shikimate kinase; alpha 98.4 2.8E-07 9.5E-12 88.9 5.4 39 424-462 6-44 (168)
68 2cdn_A Adenylate kinase; phosp 98.4 9.7E-07 3.3E-11 87.7 9.5 41 422-462 17-57 (201)
69 3trf_A Shikimate kinase, SK; a 98.4 2E-07 6.8E-12 91.1 4.4 38 425-462 5-42 (185)
70 2vp4_A Deoxynucleoside kinase; 98.4 3.3E-08 1.1E-12 101.1 -1.3 169 423-597 18-208 (230)
71 1e6c_A Shikimate kinase; phosp 98.4 2.1E-07 7.2E-12 89.7 4.3 37 426-462 3-39 (173)
72 3fb4_A Adenylate kinase; psych 98.3 5E-07 1.7E-11 90.6 6.9 116 427-557 2-127 (216)
73 2jaq_A Deoxyguanosine kinase; 98.3 7.1E-08 2.4E-12 95.3 -0.1 59 535-598 123-185 (205)
74 2j41_A Guanylate kinase; GMP, 98.3 1.2E-06 4.2E-11 86.7 8.6 131 424-558 5-140 (207)
75 1kht_A Adenylate kinase; phosp 98.3 9.9E-07 3.4E-11 86.0 7.8 38 425-462 3-45 (192)
76 3dl0_A Adenylate kinase; phosp 98.3 8.9E-07 3E-11 88.9 7.1 36 427-462 2-37 (216)
77 2qor_A Guanylate kinase; phosp 98.3 9.6E-07 3.3E-11 88.3 7.2 131 423-557 10-147 (204)
78 2een_A Hypothetical protein PH 98.3 8E-07 2.7E-11 88.1 6.1 113 656-770 45-174 (183)
79 3fdi_A Uncharacterized protein 98.2 1.2E-06 4.2E-11 88.0 7.3 35 425-460 6-40 (201)
80 2rhm_A Putative kinase; P-loop 98.2 1E-06 3.5E-11 86.3 6.2 37 424-460 4-40 (193)
81 1y63_A LMAJ004144AAA protein; 98.2 3E-06 1E-10 83.3 8.6 41 423-463 8-49 (184)
82 1nks_A Adenylate kinase; therm 98.2 2.9E-06 1E-10 82.7 7.4 36 426-461 2-42 (194)
83 3hdt_A Putative kinase; struct 98.1 2.6E-06 8.9E-11 87.2 7.2 40 423-462 12-51 (223)
84 3a00_A Guanylate kinase, GMP k 98.1 2.7E-06 9.3E-11 83.8 6.9 25 426-450 2-26 (186)
85 1ly1_A Polynucleotide kinase; 98.1 1.9E-06 6.5E-11 83.2 5.2 37 425-461 2-39 (181)
86 1aky_A Adenylate kinase; ATP:A 98.1 4.1E-06 1.4E-10 84.5 7.8 39 424-462 3-41 (220)
87 2pbr_A DTMP kinase, thymidylat 98.1 3.4E-06 1.2E-10 82.4 6.9 32 427-458 2-36 (195)
88 4g1u_C Hemin import ATP-bindin 98.1 1.2E-07 4E-12 99.8 -3.9 44 590-633 200-243 (266)
89 3cm0_A Adenylate kinase; ATP-b 98.1 3.2E-06 1.1E-10 82.5 6.5 39 424-462 3-41 (186)
90 3iij_A Coilin-interacting nucl 98.1 3.3E-06 1.1E-10 82.3 6.2 40 424-463 10-49 (180)
91 3gfo_A Cobalt import ATP-bindi 98.0 2.4E-07 8E-12 98.0 -2.9 42 590-631 196-237 (275)
92 3a4m_A L-seryl-tRNA(SEC) kinas 98.0 1.3E-05 4.6E-10 83.3 10.4 105 424-558 3-121 (260)
93 3be4_A Adenylate kinase; malar 98.0 6.4E-06 2.2E-10 83.1 7.5 40 424-463 4-43 (217)
94 2ze6_A Isopentenyl transferase 98.0 1.6E-05 5.4E-10 82.6 10.6 35 426-460 2-36 (253)
95 1zd8_A GTP:AMP phosphotransfer 98.0 6.5E-06 2.2E-10 83.5 7.2 39 424-462 6-44 (227)
96 2wwf_A Thymidilate kinase, put 98.0 1E-05 3.5E-10 80.4 7.9 35 424-458 9-43 (212)
97 1e4v_A Adenylate kinase; trans 98.0 1.2E-05 4.2E-10 80.7 8.0 36 427-462 2-37 (214)
98 2xb4_A Adenylate kinase; ATP-b 98.0 1.3E-05 4.4E-10 81.4 8.2 36 427-462 2-37 (223)
99 1kgd_A CASK, peripheral plasma 97.9 9.7E-06 3.3E-10 79.4 6.6 26 425-450 5-30 (180)
100 3lnc_A Guanylate kinase, GMP k 97.9 1.1E-05 3.6E-10 82.1 6.8 28 424-451 26-54 (231)
101 1zak_A Adenylate kinase; ATP:A 97.9 4.2E-06 1.5E-10 84.5 3.4 40 423-462 3-42 (222)
102 3umf_A Adenylate kinase; rossm 97.9 7.6E-06 2.6E-10 83.5 5.3 124 421-558 25-154 (217)
103 2z0h_A DTMP kinase, thymidylat 97.9 2E-05 6.9E-10 77.2 8.1 31 426-456 1-34 (197)
104 3nwj_A ATSK2; P loop, shikimat 97.9 1E-05 3.5E-10 84.2 6.1 38 425-462 48-85 (250)
105 3tau_A Guanylate kinase, GMP k 97.9 6.6E-06 2.3E-10 82.6 4.3 29 423-451 6-34 (208)
106 3tui_C Methionine import ATP-b 97.9 4.5E-07 1.5E-11 99.4 -5.3 28 425-452 54-81 (366)
107 3n10_A Adenylate cyclase 2; CY 97.8 3.7E-05 1.3E-09 75.7 8.4 122 639-770 42-177 (179)
108 3fvq_A Fe(3+) IONS import ATP- 97.8 5.8E-07 2E-11 98.4 -5.1 28 425-452 30-57 (359)
109 1ak2_A Adenylate kinase isoenz 97.8 2.7E-05 9.1E-10 79.4 7.5 40 423-462 14-53 (233)
110 1qhx_A CPT, protein (chloramph 97.8 3.5E-05 1.2E-09 74.4 7.8 37 425-461 3-41 (178)
111 2ihy_A ABC transporter, ATP-bi 97.8 2.4E-06 8.2E-11 90.4 -0.9 28 425-452 47-74 (279)
112 1nn5_A Similar to deoxythymidy 97.8 4.5E-05 1.5E-09 75.7 8.4 37 423-459 7-43 (215)
113 2onk_A Molybdate/tungstate ABC 97.8 8.3E-07 2.8E-11 91.9 -4.5 27 426-452 25-51 (240)
114 3rlf_A Maltose/maltodextrin im 97.8 1E-06 3.4E-11 97.2 -4.3 35 425-461 29-63 (381)
115 3uie_A Adenylyl-sulfate kinase 97.8 8.9E-05 3E-09 73.6 10.3 40 421-460 21-65 (200)
116 3gmt_A Adenylate kinase; ssgci 97.8 2.4E-05 8.4E-10 80.4 6.1 121 424-559 7-133 (230)
117 1ltq_A Polynucleotide kinase; 97.8 2.4E-05 8.2E-10 82.5 6.1 36 425-460 2-38 (301)
118 2plr_A DTMP kinase, probable t 97.7 6.1E-05 2.1E-09 74.4 8.4 29 424-452 3-31 (213)
119 2vli_A Antibiotic resistance p 97.7 3.5E-05 1.2E-09 74.7 6.5 31 424-454 4-34 (183)
120 1kag_A SKI, shikimate kinase I 97.7 1.1E-05 3.7E-10 77.7 2.5 37 425-461 4-40 (173)
121 1g6h_A High-affinity branched- 97.7 2.8E-06 9.5E-11 88.7 -1.9 28 425-452 33-60 (257)
122 2it1_A 362AA long hypothetical 97.6 2.1E-06 7.3E-11 94.1 -4.0 28 425-452 29-56 (362)
123 3sr0_A Adenylate kinase; phosp 97.6 5.6E-05 1.9E-09 76.3 6.6 114 427-558 2-125 (206)
124 1v43_A Sugar-binding transport 97.6 2.5E-06 8.4E-11 93.9 -4.2 28 425-452 37-64 (372)
125 3zvl_A Bifunctional polynucleo 97.6 6.9E-05 2.3E-09 83.5 6.7 37 423-459 256-292 (416)
126 2yyz_A Sugar ABC transporter, 97.6 2.9E-06 9.9E-11 92.9 -4.5 28 425-452 29-56 (359)
127 4eaq_A DTMP kinase, thymidylat 97.6 0.00043 1.5E-08 70.7 11.9 29 423-451 24-52 (229)
128 3d31_A Sulfate/molybdate ABC t 97.5 3.8E-06 1.3E-10 91.7 -3.8 28 425-452 26-53 (348)
129 1g29_1 MALK, maltose transport 97.5 2.8E-06 9.7E-11 93.5 -4.9 28 425-452 29-56 (372)
130 1z47_A CYSA, putative ABC-tran 97.5 3.3E-06 1.1E-10 92.3 -4.4 28 425-452 41-68 (355)
131 1vpl_A ABC transporter, ATP-bi 97.5 3.9E-06 1.3E-10 87.7 -3.9 28 425-452 41-68 (256)
132 1oxx_K GLCV, glucose, ABC tran 97.5 3.4E-06 1.1E-10 92.2 -4.6 28 425-452 31-58 (353)
133 2yz2_A Putative ABC transporte 97.5 6.9E-06 2.4E-10 86.1 -2.3 28 425-452 33-60 (266)
134 1ex7_A Guanylate kinase; subst 97.5 0.00021 7.1E-09 71.1 8.2 124 428-557 4-134 (186)
135 2pjz_A Hypothetical protein ST 97.4 1.2E-05 4.2E-10 84.3 -1.5 26 426-452 31-56 (263)
136 2ocp_A DGK, deoxyguanosine kin 97.4 3.7E-05 1.3E-09 78.7 2.1 48 536-585 149-196 (241)
137 1via_A Shikimate kinase; struc 97.4 3.9E-05 1.3E-09 74.3 2.1 36 427-462 6-41 (175)
138 2gks_A Bifunctional SAT/APS ki 97.4 0.00025 8.5E-09 81.8 9.0 128 397-554 347-487 (546)
139 2nq2_C Hypothetical ABC transp 97.4 3.9E-06 1.3E-10 87.5 -5.6 27 425-451 31-57 (253)
140 2aca_A Putative adenylate cycl 97.4 0.00037 1.3E-08 69.3 8.9 109 655-770 57-179 (189)
141 2yvu_A Probable adenylyl-sulfa 97.4 0.00024 8.3E-09 69.3 7.4 28 423-450 11-38 (186)
142 1gvn_B Zeta; postsegregational 97.4 0.00014 4.8E-09 77.0 5.9 40 422-461 30-71 (287)
143 1zp6_A Hypothetical protein AT 97.3 9.5E-05 3.2E-09 72.2 2.7 38 423-460 7-46 (191)
144 3exa_A TRNA delta(2)-isopenten 97.2 0.00013 4.6E-09 78.2 3.8 38 425-462 3-42 (322)
145 2bbw_A Adenylate kinase 4, AK4 97.2 0.00011 3.7E-09 75.4 2.9 38 424-461 26-63 (246)
146 2qt1_A Nicotinamide riboside k 97.2 0.00062 2.1E-08 67.6 7.5 115 10-134 72-189 (207)
147 2p5t_B PEZT; postsegregational 97.2 0.0002 6.9E-09 73.9 3.9 39 422-460 29-69 (253)
148 2pez_A Bifunctional 3'-phospho 97.1 0.00026 8.8E-09 68.7 4.3 34 424-457 4-40 (179)
149 3foz_A TRNA delta(2)-isopenten 97.1 0.00022 7.4E-09 76.4 4.1 40 423-462 8-49 (316)
150 3crm_A TRNA delta(2)-isopenten 97.1 0.0002 6.8E-09 77.2 3.5 35 425-459 5-39 (323)
151 3j16_B RLI1P; ribosome recycli 97.1 2.3E-05 7.8E-10 91.5 -4.1 27 425-451 378-404 (608)
152 3eph_A TRNA isopentenyltransfe 97.1 0.00021 7E-09 79.2 3.7 39 425-463 2-42 (409)
153 2bdt_A BH3686; alpha-beta prot 97.1 0.00019 6.4E-09 70.2 2.9 36 426-461 3-39 (189)
154 3tif_A Uncharacterized ABC tra 97.1 0.00021 7.1E-09 73.5 3.0 28 425-452 31-58 (235)
155 3a8t_A Adenylate isopentenyltr 97.0 0.00027 9.2E-09 76.5 3.3 36 424-459 39-74 (339)
156 2v54_A DTMP kinase, thymidylat 97.0 0.00028 9.6E-09 69.4 3.1 34 424-457 3-37 (204)
157 1x6v_B Bifunctional 3'-phospho 97.0 0.0015 5.1E-08 76.3 9.3 34 424-457 51-87 (630)
158 2pcj_A ABC transporter, lipopr 96.9 0.00033 1.1E-08 71.3 2.6 28 425-452 30-57 (224)
159 3ney_A 55 kDa erythrocyte memb 96.9 0.0015 5.2E-08 65.4 7.3 27 424-450 18-44 (197)
160 1m7g_A Adenylylsulfate kinase; 96.9 0.0005 1.7E-08 68.7 3.6 38 422-459 22-65 (211)
161 1znw_A Guanylate kinase, GMP k 96.9 0.00049 1.7E-08 68.6 3.5 27 424-450 19-45 (207)
162 1ye8_A Protein THEP1, hypothet 96.8 0.00048 1.6E-08 67.7 3.2 24 427-450 2-25 (178)
163 1b0u_A Histidine permease; ABC 96.8 0.00046 1.6E-08 72.0 2.6 28 425-452 32-59 (262)
164 2ff7_A Alpha-hemolysin translo 96.8 0.00052 1.8E-08 71.0 3.0 28 425-452 35-62 (247)
165 3lv8_A DTMP kinase, thymidylat 96.8 0.00079 2.7E-08 69.4 4.3 29 423-451 25-53 (236)
166 1mv5_A LMRA, multidrug resista 96.8 0.00058 2E-08 70.4 3.3 29 424-452 27-55 (243)
167 1ji0_A ABC transporter; ATP bi 96.8 0.00055 1.9E-08 70.5 3.0 28 425-452 32-59 (240)
168 3j16_B RLI1P; ribosome recycli 96.7 8.9E-05 3E-09 86.5 -3.6 28 424-451 102-129 (608)
169 1s96_A Guanylate kinase, GMP k 96.7 0.00078 2.7E-08 68.4 3.8 29 423-451 14-42 (219)
170 1htw_A HI0065; nucleotide-bind 96.7 0.001 3.4E-08 64.2 4.1 27 423-449 31-57 (158)
171 2ixe_A Antigen peptide transpo 96.7 0.00069 2.4E-08 71.1 3.2 28 425-452 45-72 (271)
172 2olj_A Amino acid ABC transpor 96.7 0.00059 2E-08 71.4 2.6 28 425-452 50-77 (263)
173 1lvg_A Guanylate kinase, GMP k 96.7 0.00066 2.3E-08 67.5 2.8 26 425-450 4-29 (198)
174 1sgw_A Putative ABC transporte 96.7 0.00053 1.8E-08 69.5 2.1 27 426-452 36-62 (214)
175 1z6g_A Guanylate kinase; struc 96.6 0.0008 2.7E-08 68.0 3.1 26 424-449 22-47 (218)
176 1m8p_A Sulfate adenylyltransfe 96.6 0.0024 8.4E-08 73.9 7.2 39 423-461 394-438 (573)
177 2pze_A Cystic fibrosis transme 96.6 0.00082 2.8E-08 68.7 2.6 28 425-452 34-61 (229)
178 2f6r_A COA synthase, bifunctio 96.5 0.0023 7.9E-08 67.3 5.9 71 58-135 181-253 (281)
179 3nh6_A ATP-binding cassette SU 96.5 0.00084 2.9E-08 71.8 2.5 28 425-452 80-107 (306)
180 2grj_A Dephospho-COA kinase; T 96.5 0.00066 2.2E-08 67.6 1.6 99 14-135 69-171 (192)
181 4gp7_A Metallophosphoesterase; 96.5 0.0014 4.9E-08 63.4 4.0 23 424-446 8-30 (171)
182 2cbz_A Multidrug resistance-as 96.5 0.0007 2.4E-08 69.6 1.5 26 425-450 31-56 (237)
183 2zu0_C Probable ATP-dependent 96.5 0.0014 4.7E-08 68.6 3.6 25 425-449 46-70 (267)
184 2d2e_A SUFC protein; ABC-ATPas 96.5 0.00094 3.2E-08 69.1 2.3 24 425-448 29-52 (250)
185 3ec2_A DNA replication protein 96.4 0.0031 1E-07 61.0 5.8 39 411-449 22-62 (180)
186 1rj9_A FTSY, signal recognitio 96.4 0.0017 5.9E-08 69.3 3.8 27 424-450 101-127 (304)
187 4i1u_A Dephospho-COA kinase; s 96.3 0.0035 1.2E-07 63.4 5.7 69 58-134 112-184 (210)
188 2ghi_A Transport protein; mult 96.3 0.0015 5.1E-08 68.1 3.0 26 425-450 46-71 (260)
189 1gtv_A TMK, thymidylate kinase 96.3 0.0011 3.6E-08 65.8 1.8 24 427-450 2-25 (214)
190 3e70_C DPA, signal recognition 96.3 0.0022 7.6E-08 69.2 4.3 28 423-450 127-154 (328)
191 3sop_A Neuronal-specific septi 96.3 0.0019 6.4E-08 67.8 3.6 26 426-451 3-28 (270)
192 3b85_A Phosphate starvation-in 96.3 0.0014 4.9E-08 66.0 2.5 24 425-448 22-45 (208)
193 2qi9_C Vitamin B12 import ATP- 96.3 0.0013 4.6E-08 68.1 2.3 27 425-451 26-52 (249)
194 3b9q_A Chloroplast SRP recepto 96.3 0.0023 7.8E-08 68.3 4.1 27 424-450 99-125 (302)
195 3d3q_A TRNA delta(2)-isopenten 96.3 0.00012 4.2E-09 79.3 -5.9 100 20-123 60-164 (340)
196 1g8f_A Sulfate adenylyltransfe 96.2 0.0035 1.2E-07 71.5 5.7 52 396-451 369-421 (511)
197 1xjc_A MOBB protein homolog; s 96.2 0.0023 7.9E-08 62.6 3.6 26 424-449 3-28 (169)
198 2eyu_A Twitching motility prot 96.2 0.0022 7.6E-08 66.8 3.6 28 423-450 23-50 (261)
199 4a74_A DNA repair and recombin 96.2 0.0021 7.1E-08 64.1 3.2 27 424-450 24-50 (231)
200 2i3b_A HCR-ntpase, human cance 96.2 0.002 7E-08 63.9 3.0 23 427-449 3-25 (189)
201 2ehv_A Hypothetical protein PH 96.2 0.0021 7.1E-08 65.0 3.2 24 424-447 29-52 (251)
202 2f1r_A Molybdopterin-guanine d 96.1 0.0019 6.6E-08 63.1 2.2 25 426-450 3-27 (171)
203 2bbs_A Cystic fibrosis transme 96.1 0.0016 5.3E-08 69.2 1.6 27 425-451 64-90 (290)
204 2x8a_A Nuclear valosin-contain 96.1 0.0029 1E-07 66.3 3.6 27 427-453 46-72 (274)
205 2og2_A Putative signal recogni 96.1 0.0033 1.1E-07 68.7 4.1 27 424-450 156-182 (359)
206 2v9p_A Replication protein E1; 96.0 0.0052 1.8E-07 65.6 5.3 30 421-450 122-151 (305)
207 1dek_A Deoxynucleoside monopho 96.0 0.0034 1.2E-07 64.8 3.7 34 426-459 2-35 (241)
208 1svm_A Large T antigen; AAA+ f 96.0 0.0069 2.4E-07 66.5 6.2 35 421-455 165-199 (377)
209 1in4_A RUVB, holliday junction 96.0 0.0059 2E-07 65.5 5.6 30 423-452 49-78 (334)
210 3jvv_A Twitching mobility prot 95.9 0.0049 1.7E-07 67.2 4.8 25 426-450 124-148 (356)
211 3gd7_A Fusion complex of cysti 95.9 0.0025 8.5E-08 70.4 2.5 35 425-462 47-81 (390)
212 1lv7_A FTSH; alpha/beta domain 95.9 0.008 2.7E-07 61.5 5.9 30 425-454 45-74 (257)
213 3euj_A Chromosome partition pr 95.9 0.0049 1.7E-07 69.8 4.6 35 426-462 30-64 (483)
214 1vma_A Cell division protein F 95.9 0.0044 1.5E-07 66.2 4.0 27 423-449 102-128 (306)
215 1lw7_A Transcriptional regulat 95.8 0.0041 1.4E-07 67.7 3.6 28 425-452 170-197 (365)
216 2yhs_A FTSY, cell division pro 95.8 0.0047 1.6E-07 70.1 4.2 28 423-450 291-318 (503)
217 3t15_A Ribulose bisphosphate c 95.8 0.0043 1.5E-07 65.5 3.6 35 422-456 33-67 (293)
218 3lw7_A Adenylate kinase relate 95.8 0.0087 3E-07 56.4 5.4 80 56-135 76-161 (179)
219 1np6_A Molybdopterin-guanine d 95.8 0.0047 1.6E-07 60.5 3.6 25 425-449 6-30 (174)
220 1njg_A DNA polymerase III subu 95.8 0.011 3.8E-07 58.2 6.2 34 417-450 37-70 (250)
221 3cf0_A Transitional endoplasmi 95.8 0.01 3.6E-07 62.6 6.4 33 423-455 47-79 (301)
222 2qmh_A HPR kinase/phosphorylas 95.8 0.0042 1.4E-07 62.4 3.1 37 424-461 33-69 (205)
223 3u61_B DNA polymerase accessor 95.8 0.0088 3E-07 63.3 5.8 44 411-454 34-77 (324)
224 3kta_A Chromosome segregation 95.7 0.005 1.7E-07 59.5 3.3 25 427-451 28-52 (182)
225 1sxj_C Activator 1 40 kDa subu 95.7 0.012 4E-07 63.1 6.4 40 411-451 33-72 (340)
226 1qhl_A Protein (cell division 95.7 0.0019 6.5E-08 66.1 0.1 34 427-462 29-62 (227)
227 1ixz_A ATP-dependent metallopr 95.7 0.0055 1.9E-07 62.7 3.6 26 427-452 51-76 (254)
228 3cr8_A Sulfate adenylyltranfer 95.6 0.0032 1.1E-07 72.6 1.8 28 423-450 367-394 (552)
229 1p5z_B DCK, deoxycytidine kina 95.6 0.0032 1.1E-07 65.0 1.4 32 423-454 22-54 (263)
230 2qm8_A GTPase/ATPase; G protei 95.6 0.011 3.6E-07 64.0 5.5 29 421-449 51-79 (337)
231 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.0065 2.2E-07 60.3 3.6 26 424-449 22-47 (235)
232 1sxj_E Activator 1 40 kDa subu 95.6 0.007 2.4E-07 64.7 4.0 37 412-449 23-60 (354)
233 1jjv_A Dephospho-COA kinase; P 95.5 0.012 4E-07 58.1 5.2 73 58-135 105-177 (206)
234 3kl4_A SRP54, signal recogniti 95.5 0.0072 2.5E-07 67.6 3.9 36 424-459 96-136 (433)
235 3b5x_A Lipid A export ATP-bind 95.5 0.0063 2.2E-07 70.5 3.5 28 425-452 369-396 (582)
236 2kjq_A DNAA-related protein; s 95.5 0.0052 1.8E-07 58.4 2.3 27 424-450 35-61 (149)
237 1tue_A Replication protein E1; 95.5 0.017 6E-07 58.2 6.2 43 412-454 45-87 (212)
238 2chg_A Replication factor C sm 95.4 0.019 6.4E-07 55.9 6.4 36 414-450 28-63 (226)
239 1jbk_A CLPB protein; beta barr 95.4 0.018 6.1E-07 54.6 6.0 26 424-449 42-67 (195)
240 1iy2_A ATP-dependent metallopr 95.4 0.0076 2.6E-07 62.7 3.6 26 428-453 76-101 (278)
241 3b60_A Lipid A export ATP-bind 95.4 0.0057 1.9E-07 70.9 2.8 28 425-452 369-396 (582)
242 3h4m_A Proteasome-activating n 95.4 0.014 4.9E-07 60.4 5.5 32 423-454 49-80 (285)
243 1p9r_A General secretion pathw 95.4 0.0085 2.9E-07 66.7 3.9 29 424-452 166-194 (418)
244 2p65_A Hypothetical protein PF 95.3 0.018 6.2E-07 54.7 5.7 26 424-449 42-67 (187)
245 2axn_A 6-phosphofructo-2-kinas 95.3 0.0073 2.5E-07 69.2 3.2 38 423-460 33-75 (520)
246 2ewv_A Twitching motility prot 95.3 0.0098 3.4E-07 65.1 4.1 28 423-450 134-161 (372)
247 2gza_A Type IV secretion syste 95.3 0.0054 1.8E-07 66.9 2.0 27 425-451 175-201 (361)
248 3p32_A Probable GTPase RV1496/ 95.3 0.017 5.7E-07 62.7 5.9 36 414-449 68-103 (355)
249 3b9p_A CG5977-PA, isoform A; A 95.3 0.018 6.1E-07 60.1 5.8 31 424-454 53-83 (297)
250 4a82_A Cystic fibrosis transme 95.3 0.0049 1.7E-07 71.4 1.6 28 425-452 367-394 (578)
251 1zu4_A FTSY; GTPase, signal re 95.2 0.011 3.6E-07 63.6 4.1 27 423-449 103-129 (320)
252 2w58_A DNAI, primosome compone 95.2 0.022 7.5E-07 55.8 6.1 24 426-449 55-78 (202)
253 3qf4_B Uncharacterized ABC tra 95.2 0.0058 2E-07 71.1 2.1 36 425-462 381-416 (598)
254 1oix_A RAS-related protein RAB 95.2 0.0072 2.5E-07 59.0 2.5 27 423-449 27-53 (191)
255 3dm5_A SRP54, signal recogniti 95.2 0.01 3.6E-07 66.4 4.0 36 424-459 99-139 (443)
256 2px0_A Flagellar biosynthesis 95.2 0.0094 3.2E-07 63.2 3.3 26 424-449 104-129 (296)
257 2yl4_A ATP-binding cassette SU 95.1 0.0057 1.9E-07 71.1 1.7 28 425-452 370-397 (595)
258 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.0054 1.9E-07 66.1 1.4 26 426-451 172-197 (330)
259 2qz4_A Paraplegin; AAA+, SPG7, 95.1 0.013 4.4E-07 59.6 4.2 31 424-454 38-68 (262)
260 3bos_A Putative DNA replicatio 95.1 0.02 6.9E-07 56.9 5.4 27 424-450 51-77 (242)
261 3pfi_A Holliday junction ATP-d 95.1 0.021 7E-07 60.8 5.8 32 423-454 53-84 (338)
262 2npi_A Protein CLP1; CLP1-PCF1 95.1 0.0072 2.5E-07 68.2 2.3 26 424-449 137-162 (460)
263 3ozx_A RNAse L inhibitor; ATP 95.1 0.0071 2.4E-07 69.6 2.3 28 424-451 24-51 (538)
264 3qf4_A ABC transporter, ATP-bi 95.1 0.0072 2.5E-07 70.1 2.3 28 425-452 369-396 (587)
265 1tq4_A IIGP1, interferon-induc 95.1 0.009 3.1E-07 66.4 3.0 28 423-450 67-94 (413)
266 1yqt_A RNAse L inhibitor; ATP- 95.0 0.0087 3E-07 68.8 2.8 27 425-451 47-73 (538)
267 1uf9_A TT1252 protein; P-loop, 95.0 0.014 4.8E-07 56.9 3.9 73 58-135 106-178 (203)
268 1cr0_A DNA primase/helicase; R 95.0 0.011 3.7E-07 62.0 3.2 27 423-449 33-59 (296)
269 3ld9_A DTMP kinase, thymidylat 94.9 0.016 5.5E-07 59.0 4.2 56 536-597 145-200 (223)
270 1d2n_A N-ethylmaleimide-sensit 94.9 0.032 1.1E-06 57.6 6.5 33 422-454 61-93 (272)
271 2if2_A Dephospho-COA kinase; a 94.9 0.016 5.4E-07 57.0 4.0 70 59-134 106-175 (204)
272 2cvh_A DNA repair and recombin 94.9 0.013 4.4E-07 57.9 3.4 25 423-447 18-42 (220)
273 3ozx_A RNAse L inhibitor; ATP 94.9 0.0086 3E-07 68.8 2.3 28 425-452 294-321 (538)
274 1yqt_A RNAse L inhibitor; ATP- 94.9 0.01 3.4E-07 68.3 2.8 27 425-451 312-338 (538)
275 2r62_A Cell division protease 94.9 0.024 8.3E-07 58.1 5.4 31 425-455 44-74 (268)
276 2oap_1 GSPE-2, type II secreti 94.9 0.0085 2.9E-07 68.5 2.1 27 425-451 260-286 (511)
277 1l8q_A Chromosomal replication 94.8 0.027 9.2E-07 59.7 5.8 36 414-449 25-61 (324)
278 4edh_A DTMP kinase, thymidylat 94.8 0.018 6.1E-07 58.1 4.1 27 424-450 5-31 (213)
279 1n0w_A DNA repair protein RAD5 94.8 0.014 4.8E-07 58.5 3.3 25 424-448 23-47 (243)
280 2z4s_A Chromosomal replication 94.8 0.032 1.1E-06 62.3 6.6 37 413-449 118-154 (440)
281 3bk7_A ABC transporter ATP-bin 94.8 0.012 4.1E-07 68.6 3.1 27 425-451 382-408 (607)
282 2f9l_A RAB11B, member RAS onco 94.8 0.014 4.8E-07 57.0 3.2 25 424-448 4-28 (199)
283 1ofh_A ATP-dependent HSL prote 94.7 0.022 7.6E-07 59.2 4.6 30 425-454 50-79 (310)
284 3ake_A Cytidylate kinase; CMP 94.7 0.051 1.7E-06 53.1 6.9 70 59-135 119-192 (208)
285 1nij_A Hypothetical protein YJ 94.7 0.012 4E-07 63.0 2.4 26 424-449 3-28 (318)
286 2www_A Methylmalonic aciduria 94.6 0.025 8.6E-07 61.3 5.0 26 424-449 73-98 (349)
287 3v9p_A DTMP kinase, thymidylat 94.6 0.015 5E-07 59.4 2.9 29 423-451 23-51 (227)
288 4b4t_K 26S protease regulatory 94.6 0.02 6.7E-07 64.0 4.1 35 422-456 203-237 (428)
289 3ch4_B Pmkase, phosphomevalona 94.5 0.018 6.1E-07 57.8 3.3 39 423-461 9-50 (202)
290 4fcw_A Chaperone protein CLPB; 94.5 0.027 9.1E-07 58.9 4.8 25 426-450 48-72 (311)
291 3d8b_A Fidgetin-like protein 1 94.5 0.037 1.3E-06 59.9 6.0 31 424-454 116-146 (357)
292 3bk7_A ABC transporter ATP-bin 94.5 0.012 4.2E-07 68.5 2.3 28 424-451 116-143 (607)
293 1bif_A 6-phosphofructo-2-kinas 94.5 0.016 5.5E-07 65.3 3.1 38 423-460 37-74 (469)
294 3eie_A Vacuolar protein sortin 94.5 0.04 1.4E-06 58.6 6.1 31 425-455 51-81 (322)
295 2obl_A ESCN; ATPase, hydrolase 94.5 0.018 6.2E-07 62.5 3.4 29 424-452 70-98 (347)
296 1jr3_A DNA polymerase III subu 94.4 0.042 1.5E-06 58.8 6.3 35 418-452 31-65 (373)
297 3hws_A ATP-dependent CLP prote 94.4 0.031 1.1E-06 60.3 5.0 31 425-455 51-81 (363)
298 1nlf_A Regulatory protein REPA 94.3 0.019 6.7E-07 59.6 3.2 25 425-449 30-54 (279)
299 4b4t_M 26S protease regulatory 94.3 0.024 8.3E-07 63.3 4.1 35 422-456 212-246 (434)
300 1c9k_A COBU, adenosylcobinamid 94.3 0.013 4.3E-07 57.9 1.5 24 428-452 2-25 (180)
301 4b4t_L 26S protease subunit RP 94.3 0.025 8.5E-07 63.3 4.1 34 422-455 212-245 (437)
302 2yv5_A YJEQ protein; hydrolase 94.3 0.02 6.8E-07 60.8 3.2 26 425-451 165-190 (302)
303 1iqp_A RFCS; clamp loader, ext 94.3 0.051 1.7E-06 56.8 6.2 37 413-450 35-71 (327)
304 2qag_B Septin-6, protein NEDD5 94.2 0.022 7.5E-07 63.5 3.5 25 424-448 39-65 (427)
305 3tmk_A Thymidylate kinase; pho 94.2 0.026 8.9E-07 57.2 3.7 28 424-451 4-31 (216)
306 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.029 1E-06 53.1 3.9 25 425-449 23-47 (149)
307 1sxj_A Activator 1 95 kDa subu 94.2 0.038 1.3E-06 63.0 5.4 31 425-455 77-107 (516)
308 2v3c_C SRP54, signal recogniti 94.2 0.017 5.8E-07 64.6 2.4 37 424-460 98-139 (432)
309 2dpy_A FLII, flagellum-specifi 94.2 0.022 7.7E-07 63.7 3.4 30 423-452 155-184 (438)
310 1u0l_A Probable GTPase ENGC; p 94.1 0.017 5.9E-07 61.1 2.3 27 426-452 170-196 (301)
311 1ls1_A Signal recognition part 94.1 0.029 9.9E-07 59.4 3.9 26 424-449 97-122 (295)
312 4b4t_J 26S protease regulatory 94.1 0.025 8.7E-07 62.5 3.6 33 423-455 180-212 (405)
313 1sxj_D Activator 1 41 kDa subu 94.1 0.029 1E-06 59.5 4.0 23 428-450 61-83 (353)
314 2p67_A LAO/AO transport system 94.1 0.04 1.4E-06 59.4 5.1 29 421-449 52-80 (341)
315 2iw3_A Elongation factor 3A; a 94.1 0.016 5.4E-07 70.9 2.0 35 425-461 699-733 (986)
316 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.059 2E-06 57.5 6.3 30 424-453 44-74 (322)
317 3k1j_A LON protease, ATP-depen 94.0 0.043 1.5E-06 63.8 5.6 39 410-451 48-86 (604)
318 2ffh_A Protein (FFH); SRP54, s 94.0 0.029 9.8E-07 62.6 3.9 27 424-450 97-123 (425)
319 1q3t_A Cytidylate kinase; nucl 94.0 0.09 3.1E-06 53.1 7.3 77 57-135 134-218 (236)
320 1pui_A ENGB, probable GTP-bind 94.0 0.016 5.4E-07 56.8 1.6 26 423-448 24-49 (210)
321 1fnn_A CDC6P, cell division co 94.0 0.068 2.3E-06 57.3 6.8 24 427-450 46-69 (389)
322 1hqc_A RUVB; extended AAA-ATPa 93.9 0.045 1.5E-06 57.5 5.1 29 424-452 37-65 (324)
323 1sxj_B Activator 1 37 kDa subu 93.9 0.06 2E-06 56.2 6.0 37 413-450 31-67 (323)
324 2c9o_A RUVB-like 1; hexameric 93.9 0.052 1.8E-06 60.8 5.8 27 424-450 62-88 (456)
325 2qby_A CDC6 homolog 1, cell di 93.9 0.029 9.9E-07 59.9 3.6 28 422-449 42-69 (386)
326 2wji_A Ferrous iron transport 93.9 0.03 1E-06 52.9 3.2 23 425-447 3-25 (165)
327 3m6a_A ATP-dependent protease 93.8 0.034 1.1E-06 63.9 4.1 29 424-452 107-135 (543)
328 1g41_A Heat shock protein HSLU 93.8 0.041 1.4E-06 61.7 4.6 33 425-457 50-82 (444)
329 4tmk_A Protein (thymidylate ki 93.8 0.032 1.1E-06 56.3 3.4 46 536-584 132-179 (213)
330 4b4t_H 26S protease regulatory 93.8 0.034 1.2E-06 62.5 3.9 33 423-455 241-273 (467)
331 3bhd_A Thtpase, thiamine triph 93.8 0.11 3.6E-06 53.3 7.3 68 700-768 129-214 (234)
332 3r20_A Cytidylate kinase; stru 93.7 0.11 3.6E-06 53.3 7.2 78 59-137 129-213 (233)
333 2j37_W Signal recognition part 93.7 0.035 1.2E-06 63.3 3.9 37 423-459 99-140 (504)
334 2chq_A Replication factor C sm 93.7 0.051 1.7E-06 56.6 4.9 22 428-449 41-62 (319)
335 1pzn_A RAD51, DNA repair and r 93.6 0.031 1.1E-06 60.5 3.2 27 423-449 129-155 (349)
336 2dhr_A FTSH; AAA+ protein, hex 93.6 0.035 1.2E-06 63.2 3.6 30 425-454 64-93 (499)
337 2dr3_A UPF0273 protein PH0284; 93.6 0.033 1.1E-06 55.8 3.2 26 424-449 22-47 (247)
338 2wjg_A FEOB, ferrous iron tran 93.6 0.039 1.3E-06 52.7 3.5 24 424-447 6-29 (188)
339 2rcn_A Probable GTPase ENGC; Y 93.6 0.032 1.1E-06 60.8 3.2 25 426-450 216-240 (358)
340 3pvs_A Replication-associated 93.5 0.062 2.1E-06 60.2 5.5 29 425-453 50-78 (447)
341 1um8_A ATP-dependent CLP prote 93.5 0.037 1.3E-06 60.0 3.6 30 426-455 73-102 (376)
342 3syl_A Protein CBBX; photosynt 93.5 0.063 2.1E-06 56.0 5.2 28 423-450 65-92 (309)
343 1j8m_F SRP54, signal recogniti 93.5 0.031 1.1E-06 59.2 2.8 25 425-449 98-122 (297)
344 4b4t_I 26S protease regulatory 93.4 0.044 1.5E-06 61.1 4.0 34 423-456 214-247 (437)
345 3tqf_A HPR(Ser) kinase; transf 93.4 0.046 1.6E-06 53.7 3.6 36 426-462 17-52 (181)
346 4aby_A DNA repair protein RECN 93.4 0.02 7E-07 62.8 1.2 26 427-452 62-87 (415)
347 3n70_A Transport activator; si 93.4 0.059 2E-06 50.3 4.3 22 428-449 27-48 (145)
348 2qby_B CDC6 homolog 3, cell di 93.4 0.1 3.4E-06 56.0 6.7 28 422-449 42-69 (384)
349 2qp9_X Vacuolar protein sortin 93.4 0.04 1.4E-06 59.6 3.5 31 425-455 84-114 (355)
350 1z2a_A RAS-related protein RAB 93.3 0.045 1.6E-06 50.8 3.4 24 424-447 4-27 (168)
351 3vfd_A Spastin; ATPase, microt 93.3 0.087 3E-06 57.5 6.1 31 425-455 148-178 (389)
352 3hjn_A DTMP kinase, thymidylat 93.3 0.045 1.5E-06 54.4 3.4 42 537-584 122-163 (197)
353 4hlc_A DTMP kinase, thymidylat 93.3 0.052 1.8E-06 54.3 3.9 46 537-584 125-172 (205)
354 2wsm_A Hydrogenase expression/ 93.2 0.05 1.7E-06 53.8 3.7 27 423-449 28-54 (221)
355 3qf7_A RAD50; ABC-ATPase, ATPa 93.1 0.046 1.6E-06 59.6 3.6 23 427-449 25-47 (365)
356 1tf7_A KAIC; homohexamer, hexa 93.1 0.04 1.4E-06 62.9 3.2 26 424-449 38-65 (525)
357 2ce7_A Cell division protein F 93.1 0.051 1.7E-06 61.5 4.0 31 425-455 49-79 (476)
358 2ged_A SR-beta, signal recogni 93.1 0.054 1.9E-06 52.0 3.7 26 423-448 46-71 (193)
359 1ky3_A GTP-binding protein YPT 93.1 0.05 1.7E-06 51.3 3.3 27 422-448 5-31 (182)
360 3szr_A Interferon-induced GTP- 93.1 0.026 9E-07 65.7 1.6 23 427-449 47-69 (608)
361 3clv_A RAB5 protein, putative; 93.1 0.058 2E-06 51.6 3.8 27 422-448 4-30 (208)
362 2v1u_A Cell division control p 93.0 0.043 1.5E-06 58.7 3.0 27 423-449 42-68 (387)
363 4e22_A Cytidylate kinase; P-lo 93.0 0.13 4.4E-06 52.8 6.6 79 57-136 144-229 (252)
364 1ypw_A Transitional endoplasmi 93.0 0.047 1.6E-06 65.7 3.7 33 423-455 236-268 (806)
365 1ewq_A DNA mismatch repair pro 93.0 0.047 1.6E-06 65.3 3.6 24 426-449 577-600 (765)
366 1w1w_A Structural maintenance 93.0 0.055 1.9E-06 60.0 4.0 29 424-452 25-53 (430)
367 3uk6_A RUVB-like 2; hexameric 93.0 0.083 2.8E-06 56.6 5.2 27 425-451 70-96 (368)
368 1kao_A RAP2A; GTP-binding prot 93.0 0.055 1.9E-06 50.0 3.3 23 425-447 3-25 (167)
369 3g5u_A MCG1178, multidrug resi 93.0 0.037 1.3E-06 69.9 2.8 29 424-452 1058-1086(1284)
370 2zan_A Vacuolar protein sortin 92.9 0.11 3.7E-06 58.1 6.2 30 424-453 166-196 (444)
371 2iw3_A Elongation factor 3A; a 92.9 0.044 1.5E-06 67.0 3.2 23 425-447 461-483 (986)
372 3qks_A DNA double-strand break 92.9 0.064 2.2E-06 53.4 3.9 26 425-450 23-48 (203)
373 4f4c_A Multidrug resistance pr 92.8 0.021 7.3E-07 72.3 0.4 28 425-452 1105-1132(1321)
374 1upt_A ARL1, ADP-ribosylation 92.8 0.075 2.6E-06 49.6 4.1 25 423-447 5-29 (171)
375 3g5u_A MCG1178, multidrug resi 92.8 0.039 1.3E-06 69.8 2.7 28 425-452 416-443 (1284)
376 1t9h_A YLOQ, probable GTPase E 92.8 0.027 9.3E-07 60.1 1.1 25 426-450 174-198 (307)
377 2ce2_X GTPase HRAS; signaling 92.7 0.055 1.9E-06 49.8 3.0 24 425-448 3-26 (166)
378 2lkc_A Translation initiation 92.7 0.066 2.3E-06 50.4 3.6 26 422-447 5-30 (178)
379 2gj8_A MNME, tRNA modification 92.7 0.058 2E-06 51.5 3.2 25 424-448 3-27 (172)
380 1u8z_A RAS-related protein RAL 92.7 0.069 2.3E-06 49.4 3.6 24 424-447 3-26 (168)
381 2qnr_A Septin-2, protein NEDD5 92.6 0.049 1.7E-06 57.7 2.8 26 423-448 16-41 (301)
382 1z08_A RAS-related protein RAB 92.6 0.058 2E-06 50.3 3.0 26 423-448 4-29 (170)
383 2zej_A Dardarin, leucine-rich 92.6 0.05 1.7E-06 52.3 2.5 22 426-447 3-24 (184)
384 3hu3_A Transitional endoplasmi 92.6 0.097 3.3E-06 59.4 5.3 32 423-454 236-267 (489)
385 2hf9_A Probable hydrogenase ni 92.5 0.075 2.6E-06 52.7 3.8 27 423-449 36-62 (226)
386 1vht_A Dephospho-COA kinase; s 92.5 0.15 5E-06 50.6 6.0 73 58-135 107-179 (218)
387 3ux8_A Excinuclease ABC, A sub 92.4 0.035 1.2E-06 65.3 1.5 22 425-446 348-369 (670)
388 1c1y_A RAS-related protein RAP 92.4 0.072 2.5E-06 49.4 3.4 23 425-447 3-25 (167)
389 1g16_A RAS-related protein SEC 92.4 0.064 2.2E-06 49.9 3.0 23 425-447 3-25 (170)
390 2nzj_A GTP-binding protein REM 92.4 0.072 2.5E-06 49.9 3.3 24 424-447 3-26 (175)
391 1wb9_A DNA mismatch repair pro 92.4 0.064 2.2E-06 64.4 3.7 24 425-448 607-630 (800)
392 2fn4_A P23, RAS-related protei 92.3 0.07 2.4E-06 50.2 3.2 26 423-448 7-32 (181)
393 1nrj_B SR-beta, signal recogni 92.3 0.079 2.7E-06 52.1 3.7 28 422-449 9-36 (218)
394 2hxs_A RAB-26, RAS-related pro 92.3 0.079 2.7E-06 49.9 3.5 25 423-447 4-28 (178)
395 2dyk_A GTP-binding protein; GT 92.3 0.087 3E-06 48.6 3.7 23 426-448 2-24 (161)
396 2qag_C Septin-7; cell cycle, c 92.2 0.06 2E-06 59.9 3.0 27 423-449 29-55 (418)
397 2oil_A CATX-8, RAS-related pro 92.2 0.066 2.3E-06 51.5 2.9 27 422-448 22-48 (193)
398 4f4c_A Multidrug resistance pr 92.2 0.056 1.9E-06 68.6 2.9 28 425-452 444-471 (1321)
399 1z0j_A RAB-22, RAS-related pro 92.2 0.064 2.2E-06 49.9 2.7 25 424-448 5-29 (170)
400 2xxa_A Signal recognition part 92.2 0.088 3E-06 58.8 4.2 37 423-459 98-140 (433)
401 3qkt_A DNA double-strand break 92.2 0.086 2.9E-06 56.6 4.0 25 425-449 23-47 (339)
402 3bc1_A RAS-related protein RAB 92.2 0.073 2.5E-06 50.6 3.1 25 423-447 9-33 (195)
403 4dsu_A GTPase KRAS, isoform 2B 92.1 0.071 2.4E-06 50.6 3.0 25 424-448 3-27 (189)
404 1wms_A RAB-9, RAB9, RAS-relate 92.1 0.064 2.2E-06 50.5 2.6 25 423-447 5-29 (177)
405 2erx_A GTP-binding protein DI- 92.1 0.078 2.7E-06 49.3 3.2 23 425-447 3-25 (172)
406 1r2q_A RAS-related protein RAB 92.0 0.059 2E-06 50.0 2.3 24 424-447 5-28 (170)
407 3ux8_A Excinuclease ABC, A sub 92.0 0.057 2E-06 63.5 2.7 18 425-442 44-61 (670)
408 1w5s_A Origin recognition comp 92.0 0.13 4.5E-06 55.6 5.4 25 425-449 52-76 (412)
409 2vp4_A Deoxynucleoside kinase; 92.0 0.011 3.9E-07 59.7 -2.9 101 31-134 103-208 (230)
410 1ek0_A Protein (GTP-binding pr 92.0 0.073 2.5E-06 49.4 2.9 23 425-447 3-25 (170)
411 3tw8_B RAS-related protein RAB 92.0 0.07 2.4E-06 50.2 2.8 26 422-447 6-31 (181)
412 3con_A GTPase NRAS; structural 92.0 0.075 2.6E-06 50.9 3.0 25 424-448 20-44 (190)
413 1p6x_A Thymidine kinase; P-loo 92.0 0.042 1.4E-06 59.3 1.3 28 424-451 6-33 (334)
414 3k53_A Ferrous iron transport 91.9 0.072 2.5E-06 55.1 3.0 24 425-448 3-26 (271)
415 3lxx_A GTPase IMAP family memb 91.9 0.078 2.7E-06 53.5 3.2 26 423-448 27-52 (239)
416 3lda_A DNA repair protein RAD5 91.9 0.068 2.3E-06 59.1 2.8 24 424-447 177-200 (400)
417 2p5s_A RAS and EF-hand domain 91.8 0.1 3.4E-06 50.7 3.8 26 422-447 25-50 (199)
418 3co5_A Putative two-component 91.8 0.065 2.2E-06 49.9 2.3 23 428-450 30-52 (143)
419 1z0f_A RAB14, member RAS oncog 91.8 0.086 2.9E-06 49.5 3.1 27 422-448 12-38 (179)
420 1fzq_A ADP-ribosylation factor 91.8 0.08 2.7E-06 50.8 2.9 25 423-447 14-38 (181)
421 2o5v_A DNA replication and rep 91.7 0.1 3.5E-06 56.8 4.0 24 426-449 27-50 (359)
422 2a9k_A RAS-related protein RAL 91.7 0.095 3.3E-06 49.5 3.4 24 424-447 17-40 (187)
423 1vg8_A RAS-related protein RAB 91.7 0.093 3.2E-06 50.9 3.3 27 422-448 5-31 (207)
424 1svi_A GTP-binding protein YSX 91.6 0.089 3E-06 50.5 3.1 25 423-447 21-45 (195)
425 2bov_A RAla, RAS-related prote 91.6 0.11 3.6E-06 50.3 3.6 25 423-447 12-36 (206)
426 1tf7_A KAIC; homohexamer, hexa 91.6 0.08 2.7E-06 60.4 3.2 27 424-450 280-306 (525)
427 1m7b_A RND3/RHOE small GTP-bin 91.6 0.088 3E-06 50.4 3.0 27 422-448 4-30 (184)
428 3thx_B DNA mismatch repair pro 91.6 0.082 2.8E-06 64.4 3.3 25 424-448 672-696 (918)
429 1e69_A Chromosome segregation 91.5 0.064 2.2E-06 57.1 2.1 24 427-450 26-49 (322)
430 1moz_A ARL1, ADP-ribosylation 91.4 0.075 2.6E-06 50.4 2.3 24 423-446 16-39 (183)
431 3kkq_A RAS-related protein M-R 91.4 0.12 4.1E-06 49.1 3.7 27 422-448 15-41 (183)
432 2g6b_A RAS-related protein RAB 91.4 0.091 3.1E-06 49.5 2.9 26 423-448 8-33 (180)
433 3def_A T7I23.11 protein; chlor 91.4 0.15 5.2E-06 52.4 4.8 33 415-447 26-58 (262)
434 2fg5_A RAB-22B, RAS-related pr 91.4 0.084 2.9E-06 51.0 2.6 26 422-447 20-45 (192)
435 2gf0_A GTP-binding protein DI- 91.4 0.12 4.2E-06 49.6 3.8 26 422-447 5-30 (199)
436 2y8e_A RAB-protein 6, GH09086P 91.4 0.087 3E-06 49.4 2.6 24 424-447 13-36 (179)
437 2efe_B Small GTP-binding prote 91.3 0.098 3.3E-06 49.4 3.0 25 423-447 10-34 (181)
438 2bjv_A PSP operon transcriptio 91.3 0.13 4.4E-06 52.6 4.1 23 428-450 32-54 (265)
439 3cf2_A TER ATPase, transitiona 91.3 0.089 3.1E-06 63.1 3.2 34 423-456 236-269 (806)
440 2bme_A RAB4A, RAS-related prot 91.3 0.092 3.2E-06 49.9 2.8 26 423-448 8-33 (186)
441 2r44_A Uncharacterized protein 91.3 0.094 3.2E-06 55.6 3.1 25 428-452 49-73 (331)
442 3thx_A DNA mismatch repair pro 91.1 0.092 3.1E-06 64.1 3.2 23 425-447 662-684 (934)
443 3pqc_A Probable GTP-binding pr 91.1 0.11 3.7E-06 49.6 3.1 25 424-448 22-46 (195)
444 1ni3_A YCHF GTPase, YCHF GTP-b 91.1 0.1 3.5E-06 57.5 3.2 25 423-447 18-42 (392)
445 1yrb_A ATP(GTP)binding protein 91.1 0.16 5.3E-06 51.6 4.4 27 423-449 12-38 (262)
446 3bwd_D RAC-like GTP-binding pr 91.1 0.13 4.4E-06 48.6 3.5 25 423-447 6-30 (182)
447 3q85_A GTP-binding protein REM 91.1 0.12 4E-06 48.2 3.2 22 426-447 3-24 (169)
448 3pxg_A Negative regulator of g 91.1 0.23 7.9E-06 55.8 6.2 22 428-449 204-225 (468)
449 2fh5_B SR-beta, signal recogni 91.0 0.11 3.9E-06 50.8 3.2 26 423-448 5-30 (214)
450 3ihw_A Centg3; RAS, centaurin, 91.0 0.13 4.6E-06 49.4 3.7 26 422-447 17-42 (184)
451 1z06_A RAS-related protein RAB 91.0 0.12 4.2E-06 49.5 3.3 25 423-447 18-42 (189)
452 1ksh_A ARF-like protein 2; sma 91.0 0.13 4.5E-06 48.9 3.5 25 423-447 16-40 (186)
453 1m2o_B GTP-binding protein SAR 91.0 0.11 3.6E-06 50.4 2.9 24 424-447 22-45 (190)
454 2gf9_A RAS-related protein RAB 90.9 0.11 3.9E-06 49.7 3.0 25 423-447 20-44 (189)
455 1h65_A Chloroplast outer envel 90.9 0.18 6.3E-06 51.9 4.8 30 418-447 32-61 (270)
456 3q72_A GTP-binding protein RAD 90.9 0.11 3.7E-06 48.3 2.8 23 425-447 2-24 (166)
457 1ega_A Protein (GTP-binding pr 90.9 0.098 3.4E-06 55.3 2.7 25 424-448 7-31 (301)
458 2qgz_A Helicase loader, putati 90.9 0.22 7.6E-06 52.8 5.5 26 425-450 152-177 (308)
459 3hr8_A Protein RECA; alpha and 90.8 0.13 4.4E-06 56.0 3.7 26 424-449 60-85 (356)
460 2atv_A RERG, RAS-like estrogen 90.7 0.16 5.4E-06 49.1 3.9 26 423-448 26-51 (196)
461 1f6b_A SAR1; gtpases, N-termin 90.7 0.12 4.1E-06 50.4 3.0 25 423-447 23-47 (198)
462 2xtp_A GTPase IMAP family memb 90.7 0.13 4.4E-06 52.5 3.3 26 422-447 19-44 (260)
463 1zj6_A ADP-ribosylation factor 90.6 0.15 5E-06 48.8 3.5 25 423-447 14-38 (187)
464 2o8b_B DNA mismatch repair pro 90.6 0.12 4.1E-06 63.7 3.6 24 425-449 789-812 (1022)
465 3tkl_A RAS-related protein RAB 90.6 0.13 4.4E-06 49.3 3.1 25 423-447 14-38 (196)
466 3cbq_A GTP-binding protein REM 90.6 0.11 3.6E-06 50.8 2.5 26 422-447 20-45 (195)
467 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.13 4.5E-06 48.6 3.1 24 424-447 4-27 (186)
468 2a5j_A RAS-related protein RAB 90.6 0.13 4.5E-06 49.4 3.2 25 423-447 19-43 (191)
469 3c5c_A RAS-like protein 12; GD 90.6 0.14 4.8E-06 49.3 3.3 27 422-448 18-44 (187)
470 1r8s_A ADP-ribosylation factor 90.5 0.14 4.7E-06 47.5 3.1 22 427-448 2-23 (164)
471 2iwr_A Centaurin gamma 1; ANK 90.5 0.13 4.5E-06 48.5 3.1 24 424-447 6-29 (178)
472 1ypw_A Transitional endoplasmi 90.5 0.1 3.4E-06 62.9 2.7 32 424-455 510-541 (806)
473 1u0j_A DNA replication protein 90.5 0.3 1E-05 51.0 5.9 37 414-450 92-129 (267)
474 1of1_A Thymidine kinase; trans 90.5 0.096 3.3E-06 57.4 2.3 29 422-450 46-74 (376)
475 3t5g_A GTP-binding protein RHE 90.4 0.11 3.7E-06 49.3 2.3 24 424-447 5-28 (181)
476 2o52_A RAS-related protein RAB 90.4 0.12 4E-06 50.4 2.6 27 421-447 21-47 (200)
477 3reg_A RHO-like small GTPase; 90.3 0.14 4.7E-06 49.3 3.0 27 422-448 20-46 (194)
478 2qen_A Walker-type ATPase; unk 90.3 0.17 5.8E-06 53.2 3.9 25 426-450 32-56 (350)
479 1ko7_A HPR kinase/phosphatase; 90.2 0.13 4.5E-06 55.0 3.0 35 425-460 144-178 (314)
480 1zd9_A ADP-ribosylation factor 90.2 0.15 5E-06 49.0 3.1 25 423-447 20-44 (188)
481 1a5t_A Delta prime, HOLB; zinc 90.2 0.31 1E-05 52.0 5.9 37 416-452 15-51 (334)
482 2fna_A Conserved hypothetical 90.1 0.24 8E-06 52.1 4.9 25 426-450 31-55 (357)
483 1e2k_A Thymidine kinase; trans 90.1 0.11 3.6E-06 56.1 2.2 27 424-450 3-29 (331)
484 2ew1_A RAS-related protein RAB 90.1 0.13 4.6E-06 50.5 2.8 27 422-448 23-49 (201)
485 3dz8_A RAS-related protein RAB 90.0 0.12 4.1E-06 49.7 2.3 26 423-448 21-46 (191)
486 3cph_A RAS-related protein SEC 90.0 0.19 6.5E-06 48.9 3.7 25 423-447 18-42 (213)
487 3b1v_A Ferrous iron uptake tra 89.9 0.17 5.9E-06 52.7 3.5 24 424-447 2-25 (272)
488 3te6_A Regulatory protein SIR3 89.9 0.32 1.1E-05 52.1 5.7 29 422-450 42-70 (318)
489 2b6h_A ADP-ribosylation factor 89.9 0.18 6E-06 48.9 3.4 25 423-447 27-51 (192)
490 1zcb_A G alpha I/13; GTP-bindi 89.8 0.18 6E-06 55.0 3.7 26 422-447 30-55 (362)
491 3oes_A GTPase rhebl1; small GT 89.8 0.16 5.4E-06 49.4 3.0 26 423-448 22-47 (201)
492 1g8p_A Magnesium-chelatase 38 89.8 0.2 7E-06 52.9 4.1 23 428-450 48-70 (350)
493 2f7s_A C25KG, RAS-related prot 89.8 0.15 5.3E-06 49.9 3.0 27 421-447 21-47 (217)
494 2r2a_A Uncharacterized protein 89.8 0.18 6.2E-06 50.2 3.5 23 425-447 5-27 (199)
495 2bcg_Y Protein YP2, GTP-bindin 89.8 0.15 5E-06 49.6 2.8 25 423-447 6-30 (206)
496 2h17_A ADP-ribosylation factor 89.8 0.15 5.2E-06 48.5 2.8 26 422-447 18-43 (181)
497 1gwn_A RHO-related GTP-binding 89.8 0.16 5.4E-06 50.0 3.0 26 423-448 26-51 (205)
498 2zr9_A Protein RECA, recombina 89.7 0.16 5.4E-06 55.1 3.2 26 424-449 60-85 (349)
499 1mky_A Probable GTP-binding pr 89.7 0.18 6E-06 56.2 3.6 25 424-448 179-203 (439)
500 1zbd_A Rabphilin-3A; G protein 89.7 0.15 5.1E-06 49.4 2.7 25 423-447 6-30 (203)
No 1
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.90 E-value=6.4e-24 Score=211.44 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=116.4
Q ss_pred cccc-cccccceeeeeccCCCCCCcchhhhccCCeeeeEEeC--CEEEEEecceeecCCCcccCceeEEEEeh----hHH
Q 004177 157 SISA-FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL 229 (770)
Q Consensus 157 ~g~~-~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~--~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~ 229 (770)
.|+. +...+.|.|+|||+|+++|+.++.+| |||..+ ++..+|||||+.+ .+.|+.| +|.
T Consensus 30 ~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~~t~Kgp~~~---------~~~e~~v~d~~~~~ 95 (179)
T 3ghx_A 30 QKATAFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPGAE---------RCEASNIEDVSKVQ 95 (179)
T ss_dssp TTCEEEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSSSS---------BEEEEECSCHHHHH
T ss_pred cCCccccCcceEEEEEEeCCCccHHHCCcEE-----EEEEecCCCcEEEEEecCCCC---------cEEEEEcCCHHHHH
Confidence 4666 67788999999999999999999988 999863 6789999999753 2457777 899
Q ss_pred HHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCCCC-cccchHH
Q 004177 230 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGP-WITKSYL 299 (770)
Q Consensus 230 ~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~~-------~~i~~~a~~Lgl~~~-~~~~sYl 299 (770)
++|..|||.++++++|.|+.|.+++++|+||+|+|||. |+|||++ ++ +.+.+++++|||+.+ .+++||+
T Consensus 96 ~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG~-f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~ 174 (179)
T 3ghx_A 96 SMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYR 174 (179)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHH
T ss_pred HHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHH
Confidence 99999999999999999999999999999999999998 9999987 21 678999999999875 5999999
Q ss_pred HHHH
Q 004177 300 EMVL 303 (770)
Q Consensus 300 eL~l 303 (770)
+|++
T Consensus 175 eLl~ 178 (179)
T 3ghx_A 175 QLLG 178 (179)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9985
No 2
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=2.6e-24 Score=232.64 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=146.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceeccccc----c-ccCccccccccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIR 489 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~----~-~~n~d~p~t~D~~ll~~~L~~L~ 489 (770)
.+.|++|||+||||||||||+++|+..++ +.++++|+||..... + ...++.|.++|.+++.+.+..|+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~ 168 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIK 168 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhh
Confidence 45789999999999999999999999875 457899999986431 1 12467799999999999999999
Q ss_pred cCC-CccccccccccCccCCccceeeccCccEEEEEccccchhh-----------hhhcCCeEEEEEcChhHHHHHHHHh
Q 004177 490 NGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 490 ~g~-~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~-----------l~~~lD~~I~Vd~~~d~rL~Rri~R 557 (770)
.|+ .+.+|.||+.++++.+. .+....+.++||+||++++.+. +.+.+|++|||+++.++++.|++.|
T Consensus 169 ~g~~~v~~P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~R 247 (321)
T 3tqc_A 169 SGQRNVRIPVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDR 247 (321)
T ss_dssp TTCSSEEEEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred ccccccccchhhhhccccccC-ceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHh
Confidence 999 89999999999988642 2333467899999999999854 8899999999999999999999999
Q ss_pred cccccCcCc-------------c--h------hhHHhhccchhhhccccccCcccEEEcCCCCCC
Q 004177 558 DKSRMGCFM-------------S--Q------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 601 (770)
Q Consensus 558 D~~~rG~~l-------------~--~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~ 601 (770)
|...+|... . + .+|.....|.+.+||.|++.+||+|+..+-+..
T Consensus 248 d~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~ 312 (321)
T 3tqc_A 248 VLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHS 312 (321)
T ss_dssp HHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSC
T ss_pred cchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCc
Confidence 988776321 1 0 112223468999999999999999998766543
No 3
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.89 E-value=1.8e-23 Score=208.24 Aligned_cols=138 Identities=17% Similarity=0.260 Sum_probs=117.1
Q ss_pred ccccccccccceeeeeccCCCCCCcchhhhccCCeeeeEE--eCCEEEEEecceeecCCCcccCceeEEEEeh----hHH
Q 004177 156 CSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL 229 (770)
Q Consensus 156 ~~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~--~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~ 229 (770)
.+|+.+.....|+|+||++|++ ++||||. .++++.||||||. + +.. |.+.|+|+.| +|.
T Consensus 28 ~lg~~~~~~~~Q~d~Yfd~p~~-----------~~LRIR~~~~~~~~~lT~K~p~-~-g~~--k~~~E~e~~v~d~~~~~ 92 (179)
T 1yem_A 28 TFNPEFVRYEEQEDVYFEVPRP-----------KLLRIRGVHNLKKYYLTFKEIL-D-ENN--EEFYEVEFEIGDFEKAV 92 (179)
T ss_dssp TTCCEEEEEEEEEEEEECCCTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEESCHHHHH
T ss_pred hcCCccCcceEEEEEEEcCCCC-----------CEEEEEEEcCCCeEEEEEeccC-C-CCc--cceeEEEEEeCCHHHHH
Confidence 3567788888899999999976 3559995 4899999999998 4 443 9999999999 789
Q ss_pred HHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------hhHHHHHHHHcCCCCC-cccchHHHHH
Q 004177 230 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGP-WITKSYLEMV 302 (770)
Q Consensus 230 ~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~~------~~~i~~~a~~Lgl~~~-~~~~sYleL~ 302 (770)
++|..|||.+..+++|.|..|.+++++|+||+++|+|. |+|||... .+.+.+++++|||+.+ .+++||+||+
T Consensus 93 ~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG~-f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl 171 (179)
T 1yem_A 93 EVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 171 (179)
T ss_dssp HHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC
T ss_pred HHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCCC-EEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHH
Confidence 99999999999999999999999999999999999997 99999874 4789999999999876 5999999999
Q ss_pred HhhcCCC
Q 004177 303 LEKKGVP 309 (770)
Q Consensus 303 l~~~~~~ 309 (770)
+++.+.+
T Consensus 172 ~~~~~~~ 178 (179)
T 1yem_A 172 NELSGRS 178 (179)
T ss_dssp -------
T ss_pred HhhhccC
Confidence 9876653
No 4
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.89 E-value=3.3e-23 Score=206.83 Aligned_cols=141 Identities=21% Similarity=0.320 Sum_probs=124.4
Q ss_pred ccccccccceeeeeccCCCCCCcchhhhccCCeeeeE----EeCCEEEEEecceeecCCCcccCceeEEEEehh-----H
Q 004177 158 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR----QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----T 228 (770)
Q Consensus 158 g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR----~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v~-----~ 228 (770)
|+.+.....|+|+|||+|+++|+.++.+| ||| ..++++.+|||||+.++.. +.|.|+|+.|. +
T Consensus 21 ~~~~~~~~~q~d~YfDtp~~~L~~~~~~L-----RiR~~~~~~~~~~~lT~K~p~~~~~~---~~r~E~e~~v~~~~~~~ 92 (183)
T 2een_A 21 TFEFMRKEIHEDIYYQHPCRDFSKTDEAL-----RIRIKRFNGHNEVFLTYKGPKIDEKS---KTRLEIEVEIQEDVDKY 92 (183)
T ss_dssp TSEEEEEEEEEEEEEECSSSCHHHHTCEE-----EEEEEEETTEEEEEEEEEEEECCTTS---CCEEEEEEEECSCHHHH
T ss_pred cCccCccEEEEEeEEcCCCccHHhCCeEE-----EEeeeecCCCCEEEEEECCCcCCCCc---eeEEEEEEeecCCHHHH
Confidence 45666677899999999999999999888 999 5578899999999875444 89999999985 9
Q ss_pred HHHHHhcCcceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C-------hhHHHHHHHHcCCCCCcccchH
Q 004177 229 LGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPWITKSY 298 (770)
Q Consensus 229 ~~iL~~LGf~~~~~~~K~R~~y~~~-~~~v~lD~v~~lG~~FvEIE~~--~-------~~~i~~~a~~Lgl~~~~~~~sY 298 (770)
.++|..|||.++++++|.|+.|.++ +++|+||+++++|. |+|||.. + .+.+.+++++||| .+.+++||
T Consensus 93 ~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY 170 (183)
T 2een_A 93 FELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSY 170 (183)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCH
T ss_pred HHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccH
Confidence 9999999999999999999999999 99999999999999 9999986 1 2678999999999 77799999
Q ss_pred HHHHHhhcCC
Q 004177 299 LEMVLEKKGV 308 (770)
Q Consensus 299 leL~l~~~~~ 308 (770)
++|++++.+.
T Consensus 171 ~ell~~~~~~ 180 (183)
T 2een_A 171 LELLLEKRTE 180 (183)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHhhhhh
Confidence 9999988654
No 5
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.85 E-value=5.2e-21 Score=190.22 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=113.4
Q ss_pred ccccccceeeeeccCCCCCCcchhhhccCCeeeeEEe--CCEEEEEecceeecCCCcccCceeEEEEeh----hHHHHHH
Q 004177 160 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 233 (770)
Q Consensus 160 ~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~--~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~~iL~ 233 (770)
.+.....|.|+|||+|+++++.++.+| |||.. +...+|||||| +.+.|.|+.| +|..+|.
T Consensus 34 ~~~~~~~q~d~Yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~lt~kg~---------~~~~e~e~~v~~~~~~~~~l~ 99 (179)
T 3n10_A 34 AFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGP---------GAERCEASNIEDVSKVQSMLA 99 (179)
T ss_dssp EEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECS---------SSSBEEEEECSCHHHHHHHHH
T ss_pred cccceEEEEEEEEeCCChhHHhCCceE-----EEEecCCCceEEEEEcCC---------ccccceeeccCCHHHHHHHHH
Confidence 466778899999999999999998888 99975 45678999976 3457888888 8999999
Q ss_pred hcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--Ch-------hHHHHHHHHcCCCCCc-ccchHHHHH
Q 004177 234 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMV 302 (770)
Q Consensus 234 ~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~~-------~~i~~~a~~Lgl~~~~-~~~sYleL~ 302 (770)
.|||.++++++|.|+.|.+++++|+||+|+++|. |+|||+. +. +.+.+++++|||+.+. +++||+||+
T Consensus 100 ~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 100 TLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp HTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred hCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 9999999999999999999999999999999999 9999987 21 5689999999997654 899999997
No 6
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.84 E-value=1.2e-20 Score=185.19 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=113.5
Q ss_pred ccccccccceeeeeccCCCCCCcchhhhccCCeeeeEE--eCCEEEEEecceeecCCCcccCceeEEEEeh----hHHHH
Q 004177 158 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGG 231 (770)
Q Consensus 158 g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~--~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~~i 231 (770)
|+.+.....|+|+||++|++ . +||||. .|+++.||||||. . +.. +.|.|+|+.| .|.++
T Consensus 22 ~~~~~~~~~q~d~Yfdt~~~------~-----~LRiR~~~~~~~~~lT~K~~~-~-g~~--~~~~E~e~~i~~~~~~~~~ 86 (165)
T 2dc4_A 22 GAKFFGIEEQEDVYFELPSP------K-----LLRVRKINNTGKSYITYKEIL-D-KRN--EEFYELEFEVQDPEGAIEL 86 (165)
T ss_dssp TCEEEEEEEEEEEEECCSTT------E-----EEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEBSCHHHHHHH
T ss_pred CCCcCcceeEEEEEEcCCCC------C-----EEEEEEEcCCCEEEEEEeCcC-C-CCc--eeeeEEEEEcCCHHHHHHH
Confidence 34455567899999999976 3 459995 5899999999988 4 443 8999999999 78889
Q ss_pred HHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------hhHHHHHHHHcCCCCC-cccchHHHHHHh
Q 004177 232 LLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGP-WITKSYLEMVLE 304 (770)
Q Consensus 232 L~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~~------~~~i~~~a~~Lgl~~~-~~~~sYleL~l~ 304 (770)
|..|||.+..+++|.|..|.+++++++||+++|+|. |+|||... .+.+.+++++|||+.+ .+++||++|+++
T Consensus 87 L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g~-~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~ 165 (165)
T 2dc4_A 87 FKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAGD-FLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING 165 (165)
T ss_dssp HHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred HHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCcc-EEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence 999999999999999999999999999999999997 99999874 4788999999999876 599999999864
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.82 E-value=1.9e-20 Score=200.03 Aligned_cols=174 Identities=15% Similarity=0.292 Sum_probs=133.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecc-ccc-----------cccCcc--ccccccHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS-EQV-----------KDFKYD--DFSSLDLSLLSK 483 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~-~~~-----------~~~n~d--~p~t~D~~ll~~ 483 (770)
.++.+|||+||+||||||+++.|++.++ +.++++|+||+. ... +..+++ .+.++|.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 3577999999999999999999999887 789999999973 211 112344 488999999999
Q ss_pred HHHHHhcCCCcccccccc-----ccCccCCc--cce-eeccCccEEEEEccccc----hhhhhhcCCeEEEEEcChhHHH
Q 004177 484 NISDIRNGRRTKVPIFDL-----ETGARSGF--KEL-EVSEDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL 551 (770)
Q Consensus 484 ~L~~L~~g~~v~~P~yD~-----s~g~r~~~--~~~-~~~~~~~VVIvEG~~~l----~~~l~~~lD~~I~Vd~~~d~rL 551 (770)
.+..+..++.+..|.|++ ..+.+... ..+ ....+.+++|+||++++ ...+.+.+|++|||+++.++++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 999999999999999955 23333221 111 22245789999999998 3568889999999999999999
Q ss_pred HHHHHhcccccCcCcch--hhHHhhccchhhhccccccCcccE------EEcCC
Q 004177 552 ISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHL------KIRND 597 (770)
Q Consensus 552 ~Rri~RD~~~rG~~l~~--~q~~~~v~p~~~~~I~p~~~~ADi------vI~n~ 597 (770)
.|++.||..+||.+.+. ..+... .|.+.+||+|.+++||+ +|+|+
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 99999999999987764 334444 88999999999999999 56654
No 8
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.81 E-value=2.5e-20 Score=187.03 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=113.7
Q ss_pred ccc-ccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeC--CEEEEEecceeecCCCcccCceeEEEEeh----hHH
Q 004177 157 SIS-AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL 229 (770)
Q Consensus 157 ~g~-~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~--~~~~LTyKgp~~~~~~~~ik~r~E~ev~v----~~~ 229 (770)
+|+ .+.....|+|+|||+|+++|+.++.+| |||..+ +...+|+|||+.+. +.|+.| ++.
T Consensus 32 ~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aL-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~ 97 (189)
T 2aca_A 32 IEHEVMFENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGPEADR---------CEATNITKLDSAQ 97 (189)
T ss_dssp SCCEEEEEEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECSSTTB---------EEEEEBSCHHHHH
T ss_pred cCCcccCcceEEEEEEEeCCCcchhhCCeEE-----EEEEecCCCcEEEEEcCCCcCc---------eEEEecCCHHHHH
Confidence 344 355667899999999999999999998 999753 46899999987532 235565 899
Q ss_pred HHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C-------hhHHHHHHHHcCCCCC-cccchHH
Q 004177 230 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGP-WITKSYL 299 (770)
Q Consensus 230 ~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~-------~~~i~~~a~~Lgl~~~-~~~~sYl 299 (770)
++|..|||.++++++|.|+.|.+++++|+||+++++|. |+|||.. + .+.+.+++++|||+.+ .+++||+
T Consensus 98 ~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ 176 (189)
T 2aca_A 98 SMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYK 176 (189)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTT
T ss_pred HHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCee-EEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHH
Confidence 99999999999999999999999999999999999998 9999966 1 2688999999999865 4899999
Q ss_pred HHHHhhc
Q 004177 300 EMVLEKK 306 (770)
Q Consensus 300 eL~l~~~ 306 (770)
+|+++..
T Consensus 177 ~ll~~~~ 183 (189)
T 2aca_A 177 EILSALE 183 (189)
T ss_dssp TSSCC--
T ss_pred HHHHhhh
Confidence 9987654
No 9
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.81 E-value=1.1e-19 Score=189.45 Aligned_cols=172 Identities=26% Similarity=0.483 Sum_probs=139.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------cccccceeccc--------cccccCccccccccHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKSE--------QVKDFKYDDFSSLDLSLLSK 483 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~----------vis~Ddfy~~~--------~~~~~n~d~p~t~D~~ll~~ 483 (770)
.++|++|||+|++||||||+++.|++.++.. ++++|+||+.. ..+.+.|++|.++|.+++.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 4578999999999999999999999999876 79999999741 12456788999999999999
Q ss_pred HHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccc-hhhhhhcCCeEEEEEcChhHHHHHHHHhccccc
Q 004177 484 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 562 (770)
Q Consensus 484 ~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l-~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r 562 (770)
.|+.+..+..+..|.||+..+.+.. .+....+.++||+||++++ .+.+.+.+|.+||++++.++++.|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCeeecCccccccccCCC--ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887652 2222335689999999997 578888899999999999999999999986555
Q ss_pred CcCcch--hhHHhhccchhhhccccccCcccEEEc
Q 004177 563 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 595 (770)
Q Consensus 563 G~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~ 595 (770)
|.+.+. .++.....+.+..+++|..+.||++|+
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 655443 234444556788889998889999994
No 10
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.81 E-value=7.5e-20 Score=196.73 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=140.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceeccccc----cc-cCccccccccHHHHHHHHHHHhc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KD-FKYDDFSSLDLSLLSKNISDIRN 490 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~----~~-~n~d~p~t~D~~ll~~~L~~L~~ 490 (770)
.++.+|||+||||||||||++.|+..++ +.++++|+++..... +- ..++.+.++|...+...+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 5679999999999999999999999876 567889999865321 11 23556788999999999999998
Q ss_pred CCC-ccccccccccCccCCccceeeccCccEEEEEccccchh-----------hhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 491 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 491 g~~-v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~-----------~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
++. +.+|.|+++.+++.+.. +....+.++||+||++++++ .+.+.+|.+|||++|.+.++.|+++|+
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~~-~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPDG-DKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp TCSCEEECCEETTTTEECTTC-CEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCceecccccccccCccccc-ceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 887 99999999999877432 22334568999999999976 688899999999999999999999998
Q ss_pred cccc---------------CcCcch------hhHHhhccchhhhccccccCcccEEEcCCCC
Q 004177 559 KSRM---------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 559 ~~~r---------------G~~l~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
...| |.+.++ .||...++|++.+||+|.+++||+||+|+-+
T Consensus 237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 5322 333332 3455567889999999999999999998744
No 11
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.79 E-value=1.3e-19 Score=193.53 Aligned_cols=178 Identities=18% Similarity=0.280 Sum_probs=134.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccc-cccceecccccc-c----------c-CccccccccHHH
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-D----------F-KYDDFSSLDLSL 480 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~-------~~vi-s~Ddfy~~~~~~-~----------~-n~d~p~t~D~~l 480 (770)
..+++.+|||+|+||||||||++.|+..++ +.++ ++|+||.+.... . . .++.|+++|.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 456789999999999999999999999875 3456 999999874321 1 1 134699999999
Q ss_pred HHHHHHHHhcC------CCcccccccccc----CccCCccceeeccCccEEEEEccccch-hh-----------------
Q 004177 481 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE----------------- 532 (770)
Q Consensus 481 l~~~L~~L~~g------~~v~~P~yD~s~----g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~----------------- 532 (770)
+.+.+..|+.| +.+.+|.|+++. ++|.+...+... +.+|+|+||++++. ++
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999998 678899999998 787654334444 68999999999854 32
Q ss_pred ----------hhhcCCeE---EEEEcChhHHHHH-HHHh--c-cccc--CcCcch-hhHHhhccchhhhcccccc-----
Q 004177 533 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL----- 587 (770)
Q Consensus 533 ----------l~~~lD~~---I~Vd~~~d~rL~R-ri~R--D-~~~r--G~~l~~-~q~~~~v~p~~~~~I~p~~----- 587 (770)
+++.+|++ |||+++.+.++.| |++| + ..++ |.+.++ .+|...++|+|+.|++|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccC
Confidence 34456666 9999988888887 8888 5 3345 666654 5788889999998886632
Q ss_pred -CcccEEEcCCCC
Q 004177 588 -VHAHLKIRNDFD 599 (770)
Q Consensus 588 -~~ADivI~n~~~ 599 (770)
..||+++.-+-+
T Consensus 266 ~~~adlvl~~~~~ 278 (290)
T 1odf_A 266 GSIATLTLGIDSN 278 (290)
T ss_dssp SSSEEEEEEECTT
T ss_pred CCCCCEEEEECCC
Confidence 378888764443
No 12
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.77 E-value=2e-18 Score=173.89 Aligned_cols=175 Identities=26% Similarity=0.430 Sum_probs=143.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC--Cccccccceeccc------cccccCccccccccHHHHHHHHHHHhcCCCc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKSE------QVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 494 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~--~~vis~Ddfy~~~------~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v 494 (770)
.++.+|||+||+|||||||++.|++.++ +.++++|.++... +...+.++.++.+|.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4678999999999999999999999988 8889999998742 1123445667888999999999999999999
Q ss_pred cccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch--hhH
Q 004177 495 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDI 571 (770)
Q Consensus 495 ~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~--~q~ 571 (770)
..|.++++.+.+... ......++++++||.+++. +.....+|.++|+|++.+.++.|++.|+..++|..... +++
T Consensus 84 ~~~~~~~s~g~~~~~--~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 84 EMPVYDFRAYTRSPR--RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCEETTTTEECSS--CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcccCcccCCCCC--eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999876532 1122346899999999997 45677899999999999999999999987777766543 456
Q ss_pred HhhccchhhhccccccCcccEEEcCCCC
Q 004177 572 MMTVFPMFQQHIEPHLVHAHLKIRNDFD 599 (770)
Q Consensus 572 ~~~v~p~~~~~I~p~~~~ADivI~n~~~ 599 (770)
...+.|.|..|++|.+..||++|+|+-+
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence 6677899999999999999999998754
No 13
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=2e-18 Score=186.19 Aligned_cols=178 Identities=17% Similarity=0.215 Sum_probs=138.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccccccceeccccc----ccc-CccccccccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIR 489 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-------~~vis~Ddfy~~~~~----~~~-n~d~p~t~D~~ll~~~L~~L~ 489 (770)
..++.+|||+||||||||||++.|+..+. +.++++|+|+.+... .-. .++.|.++|.+.+.+.|..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999874 357889999876321 111 146688899999999999999
Q ss_pred cCCC-ccccccccccCccCCccceeeccCccEEEEEccccch----hhhhhcCCeEEEEEcChhHHHHHHHHhccccc--
Q 004177 490 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-- 562 (770)
Q Consensus 490 ~g~~-v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~----~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~r-- 562 (770)
.+.. ...|.|+....+|.+.. .....+.+++|+||++++. ..+.+.+|++|||+++.+.++.|+++|+...+
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a-~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGA-EQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEE-EEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCcccCChhhhhhhhhH-HHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 7665 77888888887776432 2334567999999999986 57899999999999999999999998865322
Q ss_pred -------------CcCcch------hhHHhhccchhhhccccccCcccEEEcCCCCC
Q 004177 563 -------------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 600 (770)
Q Consensus 563 -------------G~~l~~------~q~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 600 (770)
|.+.++ .+|...+.|++.+||.|++.+||+||+++-+.
T Consensus 246 ~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 246 AFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp GGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred cccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 222221 23445578999999999999999999887554
No 14
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.74 E-value=4.9e-18 Score=171.72 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=133.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceeccccc----ccc-CccccccccHHHHHHHHHHHhcC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG 491 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~----~~~-n~d~p~t~D~~ll~~~L~~L~~g 491 (770)
.++..+|||+||||||||||++.|+..+. ...+++|+|+..... ..+ ..+.+.++|...+.+.+..|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 45679999999999999999999999885 567899999875321 111 13567889999999999999999
Q ss_pred CCccccccccccCccCCccceeeccCccEEEEEccccchh-----hhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 492 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 492 ~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~-----~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
+.+..|.||+..+.+.+.. ..+....+++|+||++++++ .+.+.+|.++|++++.+.++.|++.|+. ++|.+.
T Consensus 99 ~~i~~p~~d~~~~~~~g~~-~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~-~~g~t~ 176 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAGA-AEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWL-DHGLNH 176 (208)
T ss_dssp SCEEEEEEETTTTEEEEEE-EEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHH-HTTCCH
T ss_pred CceecccCCccccCCCCCc-eEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHH-hcCCCH
Confidence 9999999999887655321 22222238999999998652 4578899999999999999999999964 456655
Q ss_pred ch--hhHHhhccchhhhccccccCcccEEEcC
Q 004177 567 SQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 596 (770)
Q Consensus 567 ~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n 596 (770)
+. ..+.....|.+ .|++|.+..||+||++
T Consensus 177 ~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 177 DAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 53 23433467766 7999999999999874
No 15
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.73 E-value=4.6e-18 Score=185.14 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=112.6
Q ss_pred cccccceeccccc---------cccCccccccccHHHHHHHHHHHhcC-----------------------------CCc
Q 004177 453 VVSLESYFKSEQV---------KDFKYDDFSSLDLSLLSKNISDIRNG-----------------------------RRT 494 (770)
Q Consensus 453 vis~Ddfy~~~~~---------~~~n~d~p~t~D~~ll~~~L~~L~~g-----------------------------~~v 494 (770)
+++||+||++... ...+++.|.++|..++.+.++.|+.+ +.+
T Consensus 158 vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v 237 (359)
T 2ga8_A 158 IVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDI 237 (359)
T ss_dssp EEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCE
T ss_pred EEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceE
Confidence 6799999988532 24577899999999999999999887 568
Q ss_pred cccccccccCccCCccceeeccCccEEEEEccccchh-----hhhhcCC-----eEEEEEcChhHHHHHHHHhcccccCc
Q 004177 495 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGC 564 (770)
Q Consensus 495 ~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~-----~l~~~lD-----~~I~Vd~~~d~rL~Rri~RD~~~rG~ 564 (770)
.+|.||+..+++.+. ...+..+.++||+||++++++ .+++++| ++|||+++.++++.|+++|+.. +|.
T Consensus 238 ~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl 315 (359)
T 2ga8_A 238 FVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL 315 (359)
T ss_dssp EEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred eeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence 899999999988753 333444468999999988864 4667898 9999999999999999999874 465
Q ss_pred --Ccch--hhHHhhccchhhhccccccCcccEEEc
Q 004177 565 --FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 595 (770)
Q Consensus 565 --~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~ 595 (770)
+.+. .++.....|+. +||+|++..||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 4443 34555677866 899999999998874
No 16
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.69 E-value=3.1e-17 Score=165.04 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=114.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccceeccccc-cccCcc-----ccccccHHHHHHHH-HHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYD-----DFSSLDLSLLSKNI-SDIR 489 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L---~--~~vis~Ddfy~~~~~-~~~n~d-----~p~t~D~~ll~~~L-~~L~ 489 (770)
..++.+|||+|++||||||+++.|+..+ + +.++++|.+++.... ...+.. .++++|.+.+.+.+ ..+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 4567999999999999999999999976 3 335577988876321 111111 14778999998764 7788
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcchh
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 569 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~ 569 (770)
.++.+.+|.|++..+.+.. ......+.++||+||++++.+.+.+.+|..|||++|.++++.|++.|+ .. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~-----~~-~~~ 170 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV-----KQ-NIQ 170 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC--------------------CHH
T ss_pred cCCccccCceeccCCCCCC--ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-----HH-HHH
Confidence 8888999999998543321 122234578999999999988888999999999999999999999998 11 113
Q ss_pred hHHhhccchhhhccccc--cCcccEEEcCC
Q 004177 570 DIMMTVFPMFQQHIEPH--LVHAHLKIRND 597 (770)
Q Consensus 570 q~~~~v~p~~~~~I~p~--~~~ADivI~n~ 597 (770)
.+...+.|++..|+++. ++.||+||+|+
T Consensus 171 ~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 171 KFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 44456788999998776 68999999985
No 17
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.68 E-value=3e-16 Score=162.63 Aligned_cols=172 Identities=26% Similarity=0.438 Sum_probs=133.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------cccccceecccc--------ccccCccccccccHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKN 484 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~----------vis~Ddfy~~~~--------~~~~n~d~p~t~D~~ll~~~ 484 (770)
.++.+|||+||+|||||||++.|+..+|.. ++++|.||..-. .+.+.++++.++|.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 467899999999999999999999988854 578888876311 12235566778888888999
Q ss_pred HHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccC
Q 004177 485 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 563 (770)
Q Consensus 485 L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG 563 (770)
|..|..+.....+.++.....|... .....+.+++|+||+.++. +.+.+.+|.+|+++++.+.++.|++.|+. .+|
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~--~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G 179 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPE--TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRG 179 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSS--CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C--
T ss_pred HHHHHCCCCeecccccccccCccCc--eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcC
Confidence 9888777777777787777666643 2233456899999999874 77888899999999999999999999987 667
Q ss_pred cCcch--hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 564 CFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 564 ~~l~~--~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
.+.+. .++....++.+..|++|.++.||+||++.
T Consensus 180 ~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 180 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp -CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 66554 35555677899999999999999999654
No 18
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.66 E-value=1.1e-16 Score=173.08 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=110.1
Q ss_pred CCCCcccccHHHHHHHHHHHhCCC-CccccccccccCcccCCeEEEcCCCcEEEEEecccchHH-----------hhhcC
Q 004177 10 EGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-----------LRSLL 77 (770)
Q Consensus 10 d~d~Pda~D~~~l~~~L~~Lk~g~-~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~-----------l~~l~ 77 (770)
.+++|+++|.+++.++|..|++|+ .+.+|.|||.++++.+.....+.+.+||||||+++|++. +++++
T Consensus 148 ~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~ 227 (321)
T 3tqc_A 148 RKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFF 227 (321)
T ss_dssp GTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGC
T ss_pred hccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhc
Confidence 467899999999999999999998 899999999999987544556788999999999999943 99999
Q ss_pred CeEEEEecCchhHHHHHhhhccccC----------------CCHHHHHH----HH----HHhhhccccccCCcccEEEeC
Q 004177 78 DIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID----SI----FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 78 DlkIfVd~d~d~rl~RRi~RD~~er----------------~s~e~v~~----~v----~p~~~~yI~P~k~~ADiVI~~ 133 (770)
|++|||++|.++++.|++.||...| .+.+++.. .| +|++++||.|++.+||+||+.
T Consensus 228 D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~ 307 (321)
T 3tqc_A 228 DFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEK 307 (321)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEec
Confidence 9999999999999999999997653 24444443 23 699999999999999999998
Q ss_pred CCC
Q 004177 134 RFV 136 (770)
Q Consensus 134 ~~~ 136 (770)
+-+
T Consensus 308 g~~ 310 (321)
T 3tqc_A 308 AAD 310 (321)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 19
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.62 E-value=1.5e-16 Score=173.31 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=109.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhCC-----------------------------CCccccccccccCcccCCeEEEcCCCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEG-----------------------------KDTLIPMFDYQQKNRIGSKVIKGASSG 59 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g-----------------------------~~i~~P~YD~~~~~r~~~~~~~~~~~~ 59 (770)
..+++|++||.++|.++|+.|++| ++|.+|.|||..+++.+......++.+
T Consensus 182 ~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~~~~~~v~~~~~ 261 (359)
T 2ga8_A 182 KRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTR 261 (359)
T ss_dssp TTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEEEEEEEECTTCC
T ss_pred ccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCCCCceEecCCCC
Confidence 356799999999999999999887 579999999999999876555455579
Q ss_pred EEEEEecccchH-----HhhhcCC-----eEEEEecCchhHHHHHhhhccccCC--CHHHHHHHH----HHhhhcccccc
Q 004177 60 VVIVDGTYALDA-----RLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSI----FPLFRKHIEPD 123 (770)
Q Consensus 60 VVIVEGi~~l~~-----~l~~l~D-----lkIfVd~d~d~rl~RRi~RD~~er~--s~e~v~~~v----~p~~~~yI~P~ 123 (770)
||||||+++|++ ++++++| ++||||+|.++++.|++.||+...+ +.+++++++ +||. +||+|+
T Consensus 262 iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~-~~I~~~ 340 (359)
T 2ga8_A 262 IVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNG-RDIDNH 340 (359)
T ss_dssp EEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSS-HHHHHT
T ss_pred EEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhh-HhHhhc
Confidence 999999999983 5788999 9999999999999999999997556 999999886 7987 799999
Q ss_pred CCcccEEEeC
Q 004177 124 LHHAQIRINN 133 (770)
Q Consensus 124 k~~ADiVI~~ 133 (770)
+.+||+|+..
T Consensus 341 ~~~ad~i~~~ 350 (359)
T 2ga8_A 341 LIKVDNIVHI 350 (359)
T ss_dssp BCCCTTEEEE
T ss_pred CCCCCEEEEe
Confidence 9999999864
No 20
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.57 E-value=5.1e-15 Score=153.30 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=111.8
Q ss_pred ccccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEe------------
Q 004177 158 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVG------------ 225 (770)
Q Consensus 158 g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~------------ 225 (770)
++.......|.|+|||+|+++|+..+.+| |||..+ . +|+|+|...+..-....+.|++..
T Consensus 45 ~~~~~~~~~q~n~YfDTpd~~L~~~~~aL-----RiR~~~-~--~tlK~p~~~g~~~~~~ey~e~~~~~~~~~~~~~~~~ 116 (234)
T 3bhd_A 45 GGTLEYRVTFRDTYYDTPELSLMQADHWL-----RRREDS-G--WELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLR 116 (234)
T ss_dssp TCEEEEEEEEEEEEEECTTCHHHHTTCEE-----EEETTT-E--EEEEEESSBTTBCTTSEEEEECSHHHHHHHHHHHHT
T ss_pred CCCCCCcceEEEEEeeCCChHHHhCCcEE-----EEECCC-C--eEEecCCccCccCCcceeccccCccchhhhhhhhhc
Confidence 34455567799999999999999999999 999866 3 899988644322001344455543
Q ss_pred --h----hHHHHHHhcCcceeEEEEEEEEEEEe--------C-CEEEEEeccCCCCCCeEEEEec--C-------hhHHH
Q 004177 226 --R----MTLGGLLDLGYSVVASYKRASTYVVY--------G-NLSVSFETIDTLDETFMVLRGT--N-------RKTVG 281 (770)
Q Consensus 226 --v----~~~~iL~~LGf~~~~~~~K~R~~y~~--------~-~~~v~lD~v~~lG~~FvEIE~~--~-------~~~i~ 281 (770)
+ .+..+|..+||.++++++|.|+.|.+ + +++|+||.++ +|.+|+|||.. + .+.+.
T Consensus 117 ~~~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~ 195 (234)
T 3bhd_A 117 ADGLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIH 195 (234)
T ss_dssp C---CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHH
T ss_pred CCccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHH
Confidence 1 46677889999999999999999999 8 9999999999 99999999966 2 25788
Q ss_pred HHHHHcCCCCCcccchHHHHHHhhc
Q 004177 282 AEALRMGINGPWITKSYLEMVLEKK 306 (770)
Q Consensus 282 ~~a~~Lgl~~~~~~~sYleL~l~~~ 306 (770)
++|++|||+.+..+++|++.+++..
T Consensus 196 ~la~~Lgl~~~~~~~~k~~~~l~~~ 220 (234)
T 3bhd_A 196 RLSSMLGVPAQETAPAKLIVYLQRF 220 (234)
T ss_dssp HHHHHHTCCTTCCCCCHHHHHHHHH
T ss_pred HHHHHcCCCccccchHHHHHHHHHh
Confidence 9999999998788899988887754
No 21
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.43 E-value=7.8e-14 Score=140.08 Aligned_cols=148 Identities=15% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc----------ccccCccccccccHHHHHHHH----HHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----------VKDFKYDDFSSLDLSLLSKNI----SDI 488 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~----------~~~~n~d~p~t~D~~ll~~~L----~~L 488 (770)
....+|||+|++||||||+++.|++.+|++++++|++++... .+...++ ++++|...|.+.+ ..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 456899999999999999999999988999999999987521 1222233 6678888776632 223
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
...+.+..|.+......+.. ....++++|+.+++...+...+|..|||++|.++++.|.+.
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~-------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~------------ 149 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIIN-------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNRE------------ 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCSS------------
T ss_pred HHHHhhhCHHHHHHHHHHHH-------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHHH------------
Confidence 33345667777655433221 11468999999998878888999999999999999988811
Q ss_pred hhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 569 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 569 ~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
.|+. .|+++..+.||++|+|+-
T Consensus 150 ~q~~--------~~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 150 ADRR--------LKFQEDIVPQGIVVANNS 171 (192)
T ss_dssp HHHH--------HTTCTTCCCCSEEEECSS
T ss_pred hcCC--------chhhhHHhcCCEEEECCC
Confidence 1221 134566788999999874
No 22
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=99.40 E-value=5.4e-13 Score=135.66 Aligned_cols=129 Identities=9% Similarity=0.038 Sum_probs=106.1
Q ss_pred cccccccccceeeeeccCCCCCCcchhhhccCCeeeeEEeCC-----------EEEEEecceeecCCCcccCceeEEEEe
Q 004177 157 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGI-----------RYYLSIGDQRIVDKNFIIRPKAEFEVG 225 (770)
Q Consensus 157 ~g~~~~~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~-----------~~~LTyKgp~~~~~~~~ik~r~E~ev~ 225 (770)
+++.+.....|+|+|||+|+++|+.++.+| |||..++ ++.+|||+|.....+. ..+.|.+..
T Consensus 22 ~~~~~~~~~~~~~~y~dt~~~~l~~~~~~l-----r~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~--~~~~e~~~~ 94 (210)
T 3v85_A 22 LTPYHLKTLHQRNTFFDTPKNDLSLRRAVL-----RLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI--SRVEEDEEE 94 (210)
T ss_dssp TGGGEEEEEEEEEEEEECTTCHHHHTTEEE-----EEEEEEC------CCCCCEEEEEEEEEEEEETTE--EEEEEEEEE
T ss_pred ccccccceEEEEEEEEeCCCHHHHhCCcEE-----EEEEeCCccceeccCCCcceEEEEecCCcCCCCc--eeEEEEeec
Confidence 456677788899999999999999999999 9998644 6789999998877774 678888876
Q ss_pred h---------------------------hHHHHHHhcCcceeEEEEEEEEEEEeCCEEEEEeccC-CCCCCeEEEEec--
Q 004177 226 R---------------------------MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETID-TLDETFMVLRGT-- 275 (770)
Q Consensus 226 v---------------------------~~~~iL~~LGf~~~~~~~K~R~~y~~~~~~v~lD~v~-~lG~~FvEIE~~-- 275 (770)
+ .+.+++..+||.+.++++|.|..|.++++.++||.+. ..|. |+|||..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~-~~ELEle~~ 173 (210)
T 3v85_A 95 IEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGN-CYEIECETE 173 (210)
T ss_dssp ECHHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEECS
T ss_pred CChhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcE-EEEEEEEeC
Confidence 5 1122345789999999999999999999999999998 4577 9999987
Q ss_pred Ch----hHHHHHHHHcCCCCCc
Q 004177 276 NR----KTVGAEALRMGINGPW 293 (770)
Q Consensus 276 ~~----~~i~~~a~~Lgl~~~~ 293 (770)
+. +.+.++++++||+-..
T Consensus 174 d~e~~~~~~~~lL~~~gI~~~~ 195 (210)
T 3v85_A 174 EPERVKTMIEEFLTEEKIEFSN 195 (210)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCc
Confidence 32 5678899999997544
No 23
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.34 E-value=3.7e-12 Score=127.83 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=106.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCccccccceeccccccc------cCccccccccHHHHHHHHHHHhcCCC
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKD------FKYDDFSSLDLSLLSKNISDIRNGRR 493 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy~~~~~~~------~n~d~p~t~D~~ll~~~L~~L~~g~~ 493 (770)
....+.+|||+|++||||||+++.|++.+ ++.++++|+++...+... .+++.++++|...+.+.+..+..+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~- 95 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA- 95 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH-
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC-
Confidence 34567899999999999999999999988 789999999987643211 1223456677777777766654321
Q ss_pred ccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHH
Q 004177 494 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIM 572 (770)
Q Consensus 494 v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~ 572 (770)
..|.. +.+ .....+.+++|+||++++. +.+.+.+|..+|++++.+.++.|+..|.... ... ...+.
T Consensus 96 -~~~~~--~~~-------~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--e~~-~~~~~ 162 (207)
T 2qt1_A 96 -RHSVV--STD-------QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP--PDS-PGYFD 162 (207)
T ss_dssp -TTSSC--CC------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS--CCC-TTHHH
T ss_pred -CCCCc--CCC-------eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc--cch-HHHHH
Confidence 11211 111 1112346799999998875 5677889999999999999999887764211 110 11233
Q ss_pred hhccchhhhccccccCcccEE--EcCC
Q 004177 573 MTVFPMFQQHIEPHLVHAHLK--IRND 597 (770)
Q Consensus 573 ~~v~p~~~~~I~p~~~~ADiv--I~n~ 597 (770)
..+++.|..+++...+.||.+ |+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 163 GHVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HTHHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 356677666654444456644 6665
No 24
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.32 E-value=2.9e-12 Score=137.53 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=106.9
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCC-ccccccccccCcccCCeEEEcCCCcEEEEEecccchH-----------Hhhhc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----------RLRSL 76 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~-i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~-----------~l~~l 76 (770)
..+..|.++|...+...+..++.|+. +..|.||+..+.+.........+.+|||+||++++.+ .++++
T Consensus 135 q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~ 214 (308)
T 1sq5_A 135 KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDF 214 (308)
T ss_dssp TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGG
T ss_pred ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHh
Confidence 35678999999999999999999987 9999999999988754334456678999999999985 78999
Q ss_pred CCeEEEEecCchhHHHHHhhhcccc----------------CCCHHHHHHH----H----HHhhhccccccCCcccEEEe
Q 004177 77 LDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSLIDS----I----FPLFRKHIEPDLHHAQIRIN 132 (770)
Q Consensus 77 ~DlkIfVd~d~d~rl~RRi~RD~~e----------------r~s~e~v~~~----v----~p~~~~yI~P~k~~ADiVI~ 132 (770)
+|++|||++|.++++.|++.||... ..+.+++.+. | +|++.+||+|++.+||+||+
T Consensus 215 ~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~ 294 (308)
T 1sq5_A 215 VDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294 (308)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEE
Confidence 9999999999999999999998542 2466765543 3 68899999999999999999
Q ss_pred CCCC
Q 004177 133 NRFV 136 (770)
Q Consensus 133 ~~~~ 136 (770)
|+.+
T Consensus 295 n~~~ 298 (308)
T 1sq5_A 295 KSAN 298 (308)
T ss_dssp ECGG
T ss_pred eCCC
Confidence 8743
No 25
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=99.30 E-value=9.4e-12 Score=125.19 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=99.1
Q ss_pred cccceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh----------------
Q 004177 163 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 226 (770)
Q Consensus 163 ~~~~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---------------- 226 (770)
....|.++|||+|+++|+.++.+| |||..|+++.+|+|+|... .+.|+++.+
T Consensus 32 ~~~~~~n~YfDTpd~~L~~~~~~L-----RiR~~~~~~~~TlK~~~~~-------g~~E~~~~l~~~ea~~~l~~~~~p~ 99 (195)
T 3tj7_A 32 VFTKQVNHYFETPNSSLKEAGSAL-----RIRHKGETYTLTLKQPAEV-------GLLETHQVVTENEAKMMMETNVIIS 99 (195)
T ss_dssp CCEEEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHSSCCCS
T ss_pred ceEEEEEEEEeCCcHhHHhCCCEE-----EEEeECCeEEEEEeeCCCC-------CceEEEeeCCHHHHHHHhhcCCCCh
Confidence 346799999999999999999999 9999999999999987643 257887777
Q ss_pred -hHHHHHHhcCcce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCC-e-EEEEecCh----hHHHHHHHHcCCCCCc
Q 004177 227 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDET-F-MVLRGTNR----KTVGAEALRMGINGPW 293 (770)
Q Consensus 227 -~~~~iL~~LGf~~-----~~~~~K~R~~y~~~~~~v~lD~v~~lG~~-F-vEIE~~~~----~~i~~~a~~Lgl~~~~ 293 (770)
.+..+|+.+||.. ++.+++.|..|.+.+..++||++.++|.. | +|+|..+. +.+.++++.+|++...
T Consensus 100 ~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 100 GAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp SHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 3677899999887 59999999999999999999999988863 3 44454343 6788999999998654
No 26
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.29 E-value=2.4e-12 Score=137.29 Aligned_cols=121 Identities=13% Similarity=0.226 Sum_probs=99.9
Q ss_pred CCCCC--cccccHHHHHHHHHHHhCCCCcccccccc-----ccCcccCCeE---EEc-CCCcEEEEEecccc---h-HHh
Q 004177 9 DEGND--LDSIDFDALVQNLQDLTEGKDTLIPMFDY-----QQKNRIGSKV---IKG-ASSGVVIVDGTYAL---D-ARL 73 (770)
Q Consensus 9 ~d~d~--Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~-----~~~~r~~~~~---~~~-~~~~VVIVEGi~~l---~-~~l 73 (770)
.++++ |+++|.+.+.+.|..++.++.+..|.|+| ..+.+..... ..+ .+.++||+||.+++ . ..+
T Consensus 65 ~~~~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v 144 (290)
T 1a7j_A 65 ATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNI 144 (290)
T ss_dssp TTCSTTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBC
T ss_pred cCcCCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhH
Confidence 35565 99999999999999999999999999966 3333332211 123 46789999999998 3 578
Q ss_pred hhcCCeEEEEecCchhHHHHHhhhccccC-CCHHHHHHHH---HHhhhccccccCCcccE
Q 004177 74 RSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQI 129 (770)
Q Consensus 74 ~~l~DlkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v---~p~~~~yI~P~k~~ADi 129 (770)
.+++|++|||++|.++++.||+.||..+| ++.+++++++ .|.|.+||.|++..||+
T Consensus 145 ~~~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 145 AGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp GGGCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSE
T ss_pred HHhCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCE
Confidence 89999999999999999999999999998 7888877754 79999999999999999
No 27
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.29 E-value=2.1e-12 Score=131.43 Aligned_cols=160 Identities=21% Similarity=0.171 Sum_probs=112.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc---------c----ccccCccccccccHHHHHHHHHH-
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------Q----VKDFKYDDFSSLDLSLLSKNISD- 487 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~---------~----~~~~n~d~p~t~D~~ll~~~L~~- 487 (770)
.....-||++|+.||||||+++.|++ +|.++++.|...+.- + .+..-+..-+++|...|.+.+..
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 34678999999999999999999999 999999999876531 0 11111234567888888776542
Q ss_pred ---HhcCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccC
Q 004177 488 ---IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 563 (770)
Q Consensus 488 ---L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG 563 (770)
+..-+.+.+|..-.....+.. ..+..++++|.++++. ..+...+|..|+|++|.++++.|.+.|| |
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~------~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g 154 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREAR------DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----G 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----C
Confidence 333345566665433322210 1234689999999999 8999999999999999999999999998 3
Q ss_pred cCcch-hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 564 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 564 ~~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
.+.+. ........|... ..+.||+||+|+
T Consensus 155 ~s~eea~~ri~~Q~~~ee-----k~~~AD~VIdN~ 184 (210)
T 4i1u_A 155 FTREQVEAIIARQATREA-----RLAAADDVIVND 184 (210)
T ss_dssp CCHHHHHHHHHHSCCHHH-----HHHTCSEEEECS
T ss_pred CCHHHHHHHHHHcCChHH-----HHHhCCEEEECC
Confidence 33332 233344444432 346799999987
No 28
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=99.26 E-value=2.2e-11 Score=122.34 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=96.7
Q ss_pred ceeeeeccCCCCCCcchhhhccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh-----------------hH
Q 004177 166 AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR-----------------MT 228 (770)
Q Consensus 166 ~q~D~y~~~p~rd~~~tdeal~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v-----------------~~ 228 (770)
.|+++|||+|+++|+..+.+| |||..|+++.+|+|+|... .|.|+|+.| .+
T Consensus 35 ~~~n~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~-------gR~E~e~~l~~~~~~~~l~~~~~p~~~~ 102 (193)
T 2gfg_A 35 LQRNHYFETDDFQLKKQSSAL-----RIREKEAIFTFTLKQPHPA-------GLLETNQTLSKQEAKLALESAHFPSGEV 102 (193)
T ss_dssp EEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHHCCCCCSHH
T ss_pred eeEEEeeeCCCHHHHhCCCEE-----EEEeeCCcEEEEEccCCCC-------CCceEeccCCchhhhhhcccccCCcHHH
Confidence 499999999999999999999 9999999999999987541 489999988 25
Q ss_pred HHHHHhcCcce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--Ch----hHHHHHHHHcCCCC
Q 004177 229 LGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGING 291 (770)
Q Consensus 229 ~~iL~~LGf~~-----~~~~~K~R~~y~~~~~~v~lD~v~~lG~~FvEIE~~--~~----~~i~~~a~~Lgl~~ 291 (770)
..+|..+|+.. ++.++|.|..|.+++..+++|.....|.++.|||.. +. +.+.++++.+|+..
T Consensus 103 ~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~ 176 (193)
T 2gfg_A 103 MDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQ 176 (193)
T ss_dssp HHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCc
Confidence 67888899774 899999999999998899999999888666777754 42 35678889999964
No 29
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.25 E-value=2.4e-12 Score=136.41 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=100.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc-------------ccccCccccccccHHHHHHHH---
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-------------VKDFKYDDFSSLDLSLLSKNI--- 485 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~-------------~~~~n~d~p~t~D~~ll~~~L--- 485 (770)
..+|++|||+|++||||||+++.|+ .+|..++++|++++..- .+..-+...+.+|...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3568999999999999999999999 48999999999854210 000001112345555443211
Q ss_pred -HHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCc
Q 004177 486 -SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 564 (770)
Q Consensus 486 -~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~ 564 (770)
..+...+.+..|.+.....++.. .. ...+.++||+||.+++...+...+|..||++++.++++.|.+.|+ |.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~-~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~ 223 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VA-VAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GL 223 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HH-HHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HH-hccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CC
Confidence 11222223455655433332221 11 112347999999988877777889999999999999999999886 33
Q ss_pred Ccch-hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 565 FMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 565 ~l~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
+.+. .+.+....+. ..++ ..||++|+|+
T Consensus 224 s~e~~~~ri~~q~~~-~~~~----~~AD~vIdn~ 252 (281)
T 2f6r_A 224 SEAAAQSRLQSQMSG-QQLV----EQSNVVLSTL 252 (281)
T ss_dssp CHHHHHHHHHTSCCH-HHHH----HTCSEEEECS
T ss_pred CHHHHHHHHHHcCCh-HhhH----hhCCEEEECC
Confidence 3222 1222222222 1221 3589999886
No 30
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.24 E-value=2e-11 Score=126.79 Aligned_cols=124 Identities=23% Similarity=0.392 Sum_probs=107.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCc
Q 004177 9 DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGV 87 (770)
Q Consensus 9 ~d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~ 87 (770)
..|++|+++|++++.+.|..|..+..+..|.||+.++.+... .....+.++||+||.+++. +.+.+.+|+.|||+++.
T Consensus 83 ~~f~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~ 161 (252)
T 1uj2_A 83 FNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDA 161 (252)
T ss_dssp SCTTSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCH
T ss_pred CCCCCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCH
Confidence 467799999999999999999999999999999999877633 3445567899999999985 78899999999999999
Q ss_pred hhHHHHHhhhccccC-CCHHHHHHHH----HHhhhccccccCCcccEEEeC
Q 004177 88 HFSLISKVQYDIGDS-CSLDSLIDSI----FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 88 d~rl~RRi~RD~~er-~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~ 133 (770)
++++.|+..|+...| .+.+++.+++ .+.|.+++.|.+..||+||++
T Consensus 162 e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~ 212 (252)
T 1uj2_A 162 DTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPR 212 (252)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET
T ss_pred HHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEec
Confidence 999999999987666 6888887765 467899999999999999953
No 31
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.21 E-value=2.9e-11 Score=121.86 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=103.6
Q ss_pred CCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCC-cEEEEEecccch-----HHhhhcCCeEEEEe
Q 004177 11 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASS-GVVIVDGTYALD-----ARLRSLLDIRVAVV 84 (770)
Q Consensus 11 ~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~-~VVIVEGi~~l~-----~~l~~l~DlkIfVd 84 (770)
...|.++|.+.+.+.|..|..|+.+..|.||+..+.+.+.. ..+... +++|+||.+++. +++.+++|++||||
T Consensus 77 ~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~-~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 77 KGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGA-AEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLE 155 (208)
T ss_dssp TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEE-EEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEEC
T ss_pred CCCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCc-eEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEe
Confidence 45899999999999999999999999999999998876543 345554 899999999876 26689999999999
Q ss_pred cCchhHHHHHhhhccccCCCHHHHHHHH----HHhhhccccccCCcccEEEeC
Q 004177 85 GGVHFSLISKVQYDIGDSCSLDSLIDSI----FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 85 ~d~d~rl~RRi~RD~~er~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~ 133 (770)
++.+.++.|++.|+....++.+++.+++ +|++ +|++|++.+||+||++
T Consensus 156 ~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 156 VPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 9999999999999865448899998875 6877 7999999999999975
No 32
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.17 E-value=2.3e-12 Score=139.85 Aligned_cols=153 Identities=15% Similarity=0.206 Sum_probs=102.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--eccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
+.+|+|+||+|||||||+..|+..++..+||+|+| |+..+.+.-. |..-+.+.+...|..+..+.. ..|.++|.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Tak---p~~eE~~~v~hhl~di~~~~~-~~~~~dF~ 82 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAK---VTTEEMEGIPHYMIDILPPDA-SFSAYEFK 82 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTC---CCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccC---CCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence 36899999999999999999999999999999999 8764432110 100000111111122233333 56777776
Q ss_pred cCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEE-cChh--HHHHHHHHhcccccCcCcchhhHHhhccchh
Q 004177 503 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV-GGVH--SHLISRVQRDKSRMGCFMSQNDIMMTVFPMF 579 (770)
Q Consensus 503 ~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd-~~~d--~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~ 579 (770)
...+...... ...+..+|+++|..++.+.+...+| +|++ ++.+ .|+.|++.| ..++|.. ...+++..+.|.+
T Consensus 83 ~~a~~~i~~i-~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~-~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 83 KRAEKYIKDI-TRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN-KLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH-HHHHHHHhhCcHH
Confidence 6544321111 1245578888888877788888877 6677 7777 679999999 8888863 2367888899999
Q ss_pred hhccccc
Q 004177 580 QQHIEPH 586 (770)
Q Consensus 580 ~~~I~p~ 586 (770)
.++|+|.
T Consensus 158 a~~I~p~ 164 (340)
T 3d3q_A 158 AKDIHPN 164 (340)
T ss_dssp HHHSCTT
T ss_pred HhhcCcc
Confidence 9999885
No 33
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.15 E-value=7.9e-11 Score=126.82 Aligned_cols=126 Identities=15% Similarity=0.122 Sum_probs=106.1
Q ss_pred CCCcccccHHHHHHHHHHHhCCCC-ccccccccccCcccCCeEEEcCCCcEEEEEecccch----HHhhhcCCeEEEEec
Q 004177 11 GNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVG 85 (770)
Q Consensus 11 ~d~Pda~D~~~l~~~L~~Lk~g~~-i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~----~~l~~l~DlkIfVd~ 85 (770)
+..|+++|.+.+.+.|..|..|.. +.+|.||+...++..-....+.+.+|||+||.+++. ..+++++|++|||++
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a 226 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDA 226 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEE
T ss_pred cCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEEC
Confidence 468999999999999999997765 889999999998875434456778999999999996 689999999999999
Q ss_pred CchhHHHHHhhhcccc----------------CCCHHHHHHH----H----HHhhhccccccCCcccEEEeCCCC
Q 004177 86 GVHFSLISKVQYDIGD----------------SCSLDSLIDS----I----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 86 d~d~rl~RRi~RD~~e----------------r~s~e~v~~~----v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
|.++++.|++.|++.. ..+.+++++. | +|++.+||+|++.+||+||+++.+
T Consensus 227 ~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~ 301 (312)
T 3aez_A 227 RIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDAD 301 (312)
T ss_dssp CHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCC
Confidence 9999999999886532 1466776643 3 699999999999999999998754
No 34
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.13 E-value=2.6e-11 Score=121.40 Aligned_cols=158 Identities=20% Similarity=0.202 Sum_probs=87.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc-------------cccCccccccccHHHHHHHHH----H
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----D 487 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~-------------~~~n~d~p~t~D~~ll~~~L~----~ 487 (770)
+++|||+||+||||||+++.|++ +|..++++|++++.... +...+...+..+...+.+.+. .
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999998 89999999998764110 000011112233222222110 0
Q ss_pred HhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcc
Q 004177 488 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 567 (770)
Q Consensus 488 L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~ 567 (770)
+.....+..|.+.....+. +. ......+|+||.+++...+...+|..||++++.++++.|...|+ |.+.+
T Consensus 81 ~~~l~~~~~p~v~~~~~~~-----~~-~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQK-----LA-EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HH-TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHhccCHHHHHHHHHH-----HH-hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 0000112233332221110 00 01235889999877765577889999999999999999998886 33222
Q ss_pred h-hhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 568 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 568 ~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
. .+......+.. +..+.||++|+|+-
T Consensus 151 ~~~~r~~~q~~~~-----~~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 151 QIQRIMNSQVSQQ-----ERLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHHHSCCHH-----HHHHHCSEEEECCS
T ss_pred HHHHHHHhcCChH-----HHHHhCCEEEECCC
Confidence 1 12222222222 22346899999874
No 35
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.09 E-value=6e-11 Score=119.03 Aligned_cols=117 Identities=12% Similarity=0.248 Sum_probs=82.7
Q ss_pred cccccHHHHHHHH-HHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCCeEEEEecCchhHHH
Q 004177 14 LDSIDFDALVQNL-QDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLI 92 (770)
Q Consensus 14 Pda~D~~~l~~~L-~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~ 92 (770)
+.++|.+.|.+.+ ..++.|+.+.+|.|+|..+.... ......+.++|||||.+++.+.+.+++|+.|||++|.++++.
T Consensus 81 ~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~ 159 (201)
T 1rz3_A 81 YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFA 159 (201)
T ss_dssp HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC------
T ss_pred ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHH
Confidence 4789999998876 77888889999999998655433 234567788999999999988888999999999999999999
Q ss_pred HHhhhccccCCCHHHHHHHHHHhhhcccccc--CCcccEEEeCC
Q 004177 93 SKVQYDIGDSCSLDSLIDSIFPLFRKHIEPD--LHHAQIRINNR 134 (770)
Q Consensus 93 RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~--k~~ADiVI~~~ 134 (770)
|++.|| .+ ....+..++.|++..|+.|. +.+||+||+|+
T Consensus 160 R~~~R~-~~--~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 160 RENDQV-KQ--NIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHhcCC-HH--HHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 999999 21 23334466789999998887 58999999874
No 36
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.07 E-value=9.8e-11 Score=124.85 Aligned_cols=124 Identities=13% Similarity=0.169 Sum_probs=93.3
Q ss_pred CCcccccHHHHHHHHHHHhCC------CCcccccccccc----CcccCC-eEEEcCCCcEEEEEecccch-HH-------
Q 004177 12 NDLDSIDFDALVQNLQDLTEG------KDTLIPMFDYQQ----KNRIGS-KVIKGASSGVVIVDGTYALD-AR------- 72 (770)
Q Consensus 12 d~Pda~D~~~l~~~L~~Lk~g------~~i~~P~YD~~~----~~r~~~-~~~~~~~~~VVIVEGi~~l~-~~------- 72 (770)
.+|+++|++++.+.|..|+.| +++.+|.||+.. ++|.+. ....+ +.+|||+||++++. ++
T Consensus 97 g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~ 175 (290)
T 1odf_A 97 GLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENN 175 (290)
T ss_dssp CSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTC
T ss_pred cCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhc
Confidence 479999999999999999998 678999999999 888653 34556 88999999998855 32
Q ss_pred --------------------hhhcCCeE---EEEecCchhHHHH-Hhhh--cc-ccC---CCHHHHHHH---HHHhhhcc
Q 004177 73 --------------------LRSLLDIR---VAVVGGVHFSLIS-KVQY--DI-GDS---CSLDSLIDS---IFPLFRKH 119 (770)
Q Consensus 73 --------------------l~~l~Dlk---IfVd~d~d~rl~R-Ri~R--D~-~er---~s~e~v~~~---v~p~~~~y 119 (770)
+++++|++ |||++|.+.++.| |+.| |+ .+| ++.+++.+. ++|+|+.|
T Consensus 176 ~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~ 255 (290)
T 1odf_A 176 DLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLY 255 (290)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHH
Confidence 45555555 9999988887776 9998 63 223 788887543 47877766
Q ss_pred ccccC------CcccEEEeCCCC
Q 004177 120 IEPDL------HHAQIRINNRFV 136 (770)
Q Consensus 120 I~P~k------~~ADiVI~~~~~ 136 (770)
++|.+ ..||+||..+-+
T Consensus 256 ~~~~~~~~~~~~~adlvl~~~~~ 278 (290)
T 1odf_A 256 LNDFVRSESLGSIATLTLGIDSN 278 (290)
T ss_dssp HHHHHHHTCSSSSEEEEEEECTT
T ss_pred hHHHHHhccCCCCCCEEEEECCC
Confidence 66532 379999876543
No 37
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.03 E-value=1e-10 Score=116.76 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=89.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc-------------cccCccccccccHHHHHHHHH----HH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-------------KDFKYDDFSSLDLSLLSKNIS----DI 488 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~-------------~~~n~d~p~t~D~~ll~~~L~----~L 488 (770)
.+|+|+|++||||||+++.|++ +|..++++|+++..... +...+...+..+...+.+.+. .+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999998764210 000011123444444433210 00
Q ss_pred hcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcch
Q 004177 489 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 568 (770)
Q Consensus 489 ~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~ 568 (770)
..-..+..|.+....... +.......++|+||.+++...+...+|..||++++.++++.|...| |.+.+.
T Consensus 81 ~~l~~l~~~~v~~~~~~~-----~~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~~ 150 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKI-----TKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEED 150 (204)
T ss_dssp HHHHHHHHHHHTTTHHHH-----HHHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHHH
T ss_pred HHHHHhhCHHHHHHHHHH-----HHhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHHH
Confidence 000001112221111000 0001111689999998877666778999999999999999998876 222211
Q ss_pred -hhHHhhccchhhhccccccCcccEEEcCC
Q 004177 569 -NDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 569 -~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
.+.+....+. .+....||++|+|+
T Consensus 151 ~~~~~~~~~~~-----~~~~~~ad~vId~~ 175 (204)
T 2if2_A 151 FERRWKKQMPI-----EEKVKYADYVIDNS 175 (204)
T ss_dssp HHHHHTTSCCH-----HHHGGGCSEECCCS
T ss_pred HHHHHHhCCCh-----hHHHhcCCEEEECC
Confidence 1222222221 12345689988876
No 38
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.99 E-value=2.3e-10 Score=113.55 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccccc---c--cCccc---cccccHHHHHHHHHH----Hh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK---D--FKYDD---FSSLDLSLLSKNISD----IR 489 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~---~--~n~d~---p~t~D~~ll~~~L~~----L~ 489 (770)
.+++.+|+|+|++||||||+++.|++. |..++++|++++....+ . ..+.. .+++|...+.+.+.. +.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 356899999999999999999999997 99999999987532100 0 00100 124444444332100 00
Q ss_pred cCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 490 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 490 ~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..+.+..|.+. .++.. .. ...+..+||+||.+++...+...+|..+|++++.+.++.|...|+
T Consensus 84 ~l~~~~~~~i~---~~~i~--~~-~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--EL-SRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--HH-HTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHhChHHH---HHHHH--Hh-hhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcC
Confidence 00011223322 00000 00 012357999999887766666778999999999999999988775
No 39
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.97 E-value=5.1e-10 Score=113.07 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecccc-c------------cccCccccccccHHHHHHHHH----
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-V------------KDFKYDDFSSLDLSLLSKNIS---- 486 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~-~------------~~~n~d~p~t~D~~ll~~~L~---- 486 (770)
.+++|+|+|++||||||+++.|++ +|..+++.|++++... . +...+...+.++...+.+.+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 478999999999999999999999 8999999999876411 0 000111122344443332221
Q ss_pred HHhcCCCccccccccccCccCCccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCc
Q 004177 487 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 566 (770)
Q Consensus 487 ~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l 566 (770)
.+...+.+..|.+........ . ..+..++++|+.++....+...+|..||++++.+.++.|...|+. .+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~-----~-~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~----~~~ 151 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQI-----Q-QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDD----VTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----H-HCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHT----CCH
T ss_pred HHHHHHHhHCHHHHHHHHHHH-----H-hcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCC----CCH
Confidence 011111122333322111100 0 002357888998776544667899999999999999999888752 221
Q ss_pred ch-hhHHhhccchhhhccccccCcccEEEcCCC
Q 004177 567 SQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 567 ~~-~q~~~~v~p~~~~~I~p~~~~ADivI~n~~ 598 (770)
+. .+......+.+. ....||++|+|+-
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~ad~vId~~~ 179 (218)
T 1vht_A 152 EHVEQILAAQATREA-----RLAVADDVIDNNG 179 (218)
T ss_dssp HHHHHHHHHSCCHHH-----HHHHCSEEEECSS
T ss_pred HHHHHHHHhcCChHH-----HHHhCCEEEECCC
Confidence 11 122222223222 1245889998875
No 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.97 E-value=2.4e-09 Score=107.25 Aligned_cols=124 Identities=22% Similarity=0.359 Sum_probs=107.1
Q ss_pred CCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCchh
Q 004177 11 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHF 89 (770)
Q Consensus 11 ~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~ 89 (770)
+++|.++|.+.+.+.+..+..++.+..|.|++..+.+... ...+...+++|+||.+++. +.+..++|.+||||++.+.
T Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~-~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~ 137 (211)
T 3asz_A 59 YDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPR-RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADE 137 (211)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHH
T ss_pred CCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCC-eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHH
Confidence 4578999999999999999999889999999988876543 2345667899999999998 7889999999999999999
Q ss_pred HHHHHhhhccccC-CCHHHHHHH----HHHhhhccccccCCcccEEEeCCC
Q 004177 90 SLISKVQYDIGDS-CSLDSLIDS----IFPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 90 rl~RRi~RD~~er-~s~e~v~~~----v~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
++.|++.|+..++ .+...+.++ +.|+|..|++|.+..||+||.|+.
T Consensus 138 ~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 138 RFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9999999998766 777777665 379999999999999999999864
No 41
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.95 E-value=3.5e-09 Score=109.34 Aligned_cols=126 Identities=20% Similarity=0.347 Sum_probs=105.9
Q ss_pred CCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCch
Q 004177 10 EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVH 88 (770)
Q Consensus 10 d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d 88 (770)
.+++|+++|.+.+.+.|..|..+....+|.|+...+.+.... ....+.+++|+||..++. +.+.+++|.+|||+++.+
T Consensus 87 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~ 165 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSD 165 (245)
T ss_dssp CTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHH
T ss_pred CCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHH
Confidence 566899999999999999998888888899999888776543 335567899999999886 888999999999999999
Q ss_pred hHHHHHhhhccccCCCHHHHHHHH----HHhhhccccccCCcccEEEeCCCC
Q 004177 89 FSLISKVQYDIGDSCSLDSLIDSI----FPLFRKHIEPDLHHAQIRINNRFV 136 (770)
Q Consensus 89 ~rl~RRi~RD~~er~s~e~v~~~v----~p~~~~yI~P~k~~ADiVI~~~~~ 136 (770)
.++.|++.|++..+++.+++.++| ++.+++|++|.+..||+||++..+
T Consensus 166 ~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~d 217 (245)
T 2jeo_A 166 VRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVD 217 (245)
T ss_dssp HHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCC
Confidence 999999999983338899998875 679999999999999999976543
No 42
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.87 E-value=2.4e-09 Score=108.27 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=35.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+.+|||+||+||||||+++.|++.+|.++++.|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 46899999999999999999999999999999999874
No 43
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.86 E-value=3e-09 Score=105.76 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=74.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc----cccCccccccccHHHHHHHHHHHh-------------
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR------------- 489 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~----~~~n~d~p~t~D~~ll~~~L~~L~------------- 489 (770)
+|+|+|++||||||+++.|++.+|.++++.|++++.... ...+++++ +.+.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDE-----EGLLALLEGLGVRLLAQAEGNRVL 78 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCH-----HHHHHHHHHTTCEEECCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCH-----HHHHHHHHhCceeeeecCCCceEE
Confidence 899999999999999999999999999999999875321 11222222 22222222211
Q ss_pred -cCCCcccccccc---------ccCccCCccce----eeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHH
Q 004177 490 -NGRRTKVPIFDL---------ETGARSGFKEL----EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 555 (770)
Q Consensus 490 -~g~~v~~P~yD~---------s~g~r~~~~~~----~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri 555 (770)
.|+.+..+.... ..+.... ..+ .... ..+|+||.+++ ..+.+.+|++||++++.++++.|+.
T Consensus 79 ~~g~~v~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~ 154 (208)
T 3ake_A 79 ADGEDLTSFLHTPEVDRVVSAVARLPGVR-AWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRA 154 (208)
T ss_dssp ETTEECGGGSSSHHHHHHHHHHHTCHHHH-HHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHH
T ss_pred ECCeeCchhhChHHHHHHHHHhcccHHHH-HHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHH
Confidence 111110000000 0000000 000 0011 57899999877 3455668999999999999999998
Q ss_pred Hhcc
Q 004177 556 QRDK 559 (770)
Q Consensus 556 ~RD~ 559 (770)
.|+.
T Consensus 155 ~r~~ 158 (208)
T 3ake_A 155 RERP 158 (208)
T ss_dssp HTSS
T ss_pred hhcc
Confidence 8853
No 44
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.80 E-value=5.3e-09 Score=100.19 Aligned_cols=155 Identities=20% Similarity=0.257 Sum_probs=81.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 505 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~ 505 (770)
++|+|+|++||||||+++.| +.+|..++++|++++...... . +...++..+.+.+... .|....... ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~----~~- 70 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIE-A---KPGERLMDFAKRLREI-YGDGVVARL----CV- 70 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHH-C------CCHHHHHHHHHHH-HCTTHHHHH----HH-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhc-C---CChhHHHHHHHHHHhh-CCHHHHHHH----HH-
Confidence 47899999999999999999 889999999988876531111 0 1111122222221110 011110000 00
Q ss_pred cCCccceeeccCccEEEEEccccch--hhhhhcC---CeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhh
Q 004177 506 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ 580 (770)
Q Consensus 506 r~~~~~~~~~~~~~VVIvEG~~~l~--~~l~~~l---D~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~ 580 (770)
..+. ....+.+|+||..... ..+...+ +..||++++.++++.|...|+....+...+ ++.........
T Consensus 71 ----~~l~-~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~--~~~~r~~~~~~ 143 (179)
T 3lw7_A 71 ----EELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEIS--ELIRRDREELK 143 (179)
T ss_dssp ----HHHC-SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHH--HHHHHHHHHHH
T ss_pred ----HHHH-hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHH--HHHHHHHhhhc
Confidence 0000 1235789999973221 3344444 489999999999999998886432222222 11111100000
Q ss_pred hccccccCcccEEEcCCC
Q 004177 581 QHIEPHLVHAHLKIRNDF 598 (770)
Q Consensus 581 ~~I~p~~~~ADivI~n~~ 598 (770)
.-+.+....||++|+|+-
T Consensus 144 ~~~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 144 LGIGEVIAMADYIITNDS 161 (179)
T ss_dssp HTHHHHHHTCSEEEECCS
T ss_pred cChHhHHHhCCEEEECCC
Confidence 012334467999998764
No 45
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.78 E-value=1.4e-08 Score=104.06 Aligned_cols=168 Identities=14% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccc----cccCccccccccHHHHHHHHHHHh---------
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR--------- 489 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~----~~~n~d~p~t~D~~ll~~~L~~L~--------- 489 (770)
.++.+|+|+|++||||||+++.|++.+|..+++.|++++.... ...++++ .+.+.+.+..+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~f~~~~~~ 88 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEE-----VEALLALLDQHPISFGRSETG 88 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTC-----HHHHHHHHHHSCCEEEEETTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCccc-----HHHHHHHHHhccccccccCCc
Confidence 4678999999999999999999999999999999999875211 1112222 122222222110
Q ss_pred ------cCCCccccccc---------cccCccC--Cc-cceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHH
Q 004177 490 ------NGRRTKVPIFD---------LETGARS--GF-KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 551 (770)
Q Consensus 490 ------~g~~v~~P~yD---------~s~g~r~--~~-~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL 551 (770)
.|+.+....-. .+.+... .. ...........+++||..... .+...+|++||++++.++++
T Consensus 89 ~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~ 167 (236)
T 1q3t_A 89 DQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERA 167 (236)
T ss_dssp EEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHH
T ss_pred cceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHH
Confidence 11111000000 0000000 00 000011223567889987643 23345799999999999999
Q ss_pred HHHHHhcccccCc--Ccch--hhHHhhccchhhhccccccCccc-EEEcCC
Q 004177 552 ISRVQRDKSRMGC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 597 (770)
Q Consensus 552 ~Rri~RD~~~rG~--~l~~--~q~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 597 (770)
.|++.|. ..||. +.+. ..+....++....++.|....+| ++|+|+
T Consensus 168 ~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 168 ERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 9986553 23342 2221 12222244555556677655566 888875
No 46
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.77 E-value=2.1e-08 Score=100.02 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
.+.+|+|+|++||||||+++.|++.++..+++.|+++..........+. .+........+..+...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~~~l~~~------------ 82 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGI--PLTDDDRWPWLAAIGER------------ 82 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTC--CCCHHHHHHHHHHHHHH------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCC--CCCchhhHHHHHHHHHH------------
Confidence 4678999999999999999999999999999999987542211100010 01111111112221100
Q ss_pred CccCCccceeeccCccEEEEEccccch---hhhhhcC---CeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFP 577 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~l~~~l---D~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p 577 (770)
......+|+++..... ..+.... +..|+++++.++.+.|...|...... . .... .
T Consensus 83 -----------~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~--~---~~~~---~ 143 (202)
T 3t61_A 83 -----------LASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP--S---SLLQ---T 143 (202)
T ss_dssp -----------HTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC--H---HHHH---H
T ss_pred -----------HhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC--H---HHHH---H
Confidence 0112345666655432 2333333 58999999999999998887632111 1 1111 1
Q ss_pred hhhhccccccCcccEEEcCC
Q 004177 578 MFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 578 ~~~~~I~p~~~~ADivI~n~ 597 (770)
.+..+-.+....++++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 144 QLETLEDPRGEVRTVAVDVA 163 (202)
T ss_dssp HHHHCCCCTTSTTEEEEESS
T ss_pred HHHhcCCCCCCCCeEEEeCC
Confidence 22233234455689999887
No 47
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=98.75 E-value=3.2e-08 Score=98.17 Aligned_cols=111 Identities=20% Similarity=0.332 Sum_probs=96.4
Q ss_pred CeEEEE--EeCceeeEEeeeeccccCeeeccccceEEe-h-hhHHHHHhhhhhhhhheeeeeeEEecCeEEEEEeccccC
Q 004177 658 DCIRVR--ICEGRFALLIREPLREGNFIIQPKVDFDIS-I-STVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDA 733 (770)
Q Consensus 658 ~~i~~r--~~~~r~~l~~~~~~~~~~~~~~p~~~f~~~-~-~~~~gl~~lgy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (770)
.||||| +.++++.|.+..|. +++...+...+++|. . .+..-|.+|||+.+..++.....|.-+++.|++|+.+.+
T Consensus 50 ~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~l 128 (179)
T 1yem_A 50 KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGI 128 (179)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCC
Confidence 899999 55899999999999 999888777777775 3 344445678999999999999999999999999999999
Q ss_pred CCceEEEecCC------HHHHHHhhhhcccccc-cccchhhccC
Q 004177 734 PSPYLQIKGVD------KEAVAAAGSTLKLDGS-YTTKVMSLAL 770 (770)
Q Consensus 734 ~~~~~~~~g~~------~~~v~~~~~~~~~~~~-~~~~~~~~~~ 770 (770)
+ .|+.|.... ++.+.+++.+|||+.. .+++||+|++
T Consensus 129 G-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl 171 (179)
T 1yem_A 129 G-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELI 171 (179)
T ss_dssp E-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC
T ss_pred C-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHH
Confidence 8 799998765 7889999999999987 9999999985
No 48
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=1.7e-08 Score=98.84 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
.|.+|+|.|++||||||+++.|++.++..+++.|++.+...... ++.--..+.+. +..|.....+......
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~------~~~~~~~~~~~---~~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNP------DSQYGELIEKY---IKEGKIVPVEITISLL 72 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCT------TSTTHHHHHHH---HHTTCCCCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhcc------CChHHHHHHHH---HHCCCcCCHHHHHHHH
Confidence 47899999999999999999999999999999998876421100 00001111111 1223221111000000
Q ss_pred CccCCccceeeccCccEEEEEccccchh---hhhh------cCCeEEEEEcChhHHHHHHHHhcc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK------SLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~~---~l~~------~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
..... ...........+|+||...... .+.. ..|..||++++.++++.|...|+.
T Consensus 73 ~~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 73 KREMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 00000 0000012356889999876532 2222 357899999999999999988864
No 49
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=98.71 E-value=4e-08 Score=94.97 Aligned_cols=94 Identities=9% Similarity=0.099 Sum_probs=72.3
Q ss_pred ccceeeeeccCCCCCCcchhhh-ccCCeeeeEEeCCEEEEEecceeecCCCcccCceeEEEEeh---hHHHHHHhcCcce
Q 004177 164 NEAQTDNFIEMYLRPPSATEEA-RINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSV 239 (770)
Q Consensus 164 ~~~q~D~y~~~p~rd~~~tdea-l~~~~lRiR~~~~~~~LTyKgp~~~~~~~~ik~r~E~ev~v---~~~~iL~~LGf~~ 239 (770)
....++.|++++ ++++ + |||..|.+++||+||+. + ++|.|+|..| .+..+|..+ .
T Consensus 22 ~~~i~QgYl~~~------~~~~~v-----RvR~~g~~~~lT~Kg~~----g---~~R~E~E~~I~~~~~~~ll~~~---~ 80 (153)
T 2fbl_A 22 AVPLRQGYLTTP------TDSIEL-----RLRQQGTEYFMTLKSEG----G---LSRQEYEIQIDVTQFEMLWPAT---E 80 (153)
T ss_dssp EEEEEEEESSCT------TSSSEE-----EEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGG---T
T ss_pred CeEEEEEEecCC------CCceEE-----EEEEeCCEEEEEEEcCC----C---ceeEEEEEECCHHHHHHHHhhC---C
Confidence 356789999965 4556 6 99999999999999887 5 6899999999 566666644 3
Q ss_pred eEEEEEEEEEEEeCC-EEEEEeccCC-C-CCCeEEEEecChh
Q 004177 240 VASYKRASTYVVYGN-LSVSFETIDT-L-DETFMVLRGTNRK 278 (770)
Q Consensus 240 ~~~~~K~R~~y~~~~-~~v~lD~v~~-l-G~~FvEIE~~~~~ 278 (770)
...++|.|..|.+++ ..++||.++| + |-.++|||..+++
T Consensus 81 ~~~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~ 122 (153)
T 2fbl_A 81 GRRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSED 122 (153)
T ss_dssp TSEEEEEEEEEECTTCCEEEEEEECGGGTTCEEEEEEESSHH
T ss_pred CCEEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEEEEecCcc
Confidence 778999999999999 9999999987 3 3459999997754
No 50
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.69 E-value=2.9e-08 Score=103.15 Aligned_cols=39 Identities=21% Similarity=0.551 Sum_probs=34.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
....+|+|+||+||||||+++.|++.||...++.+.+|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r 63 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYR 63 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceeh
Confidence 345799999999999999999999999988888888874
No 51
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.69 E-value=8.3e-09 Score=106.54 Aligned_cols=172 Identities=14% Similarity=0.179 Sum_probs=90.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhc-------CCCcc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN-------GRRTK 495 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~-------g~~v~ 495 (770)
..|++|+|.||+||||||+++.|++.++..+++.|.+|+......... .....|.+.+.+.+..+.. +..+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~ 85 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRA-GADLTDPAAIEKAAADAEIGVGSDPDVDAAF 85 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHH-TCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHc-CCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence 357899999999999999999999999999999999987632110000 0011223333333322110 00111
Q ss_pred ccccccccCccCC--------------------ccceeeccCccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHH
Q 004177 496 VPIFDLETGARSG--------------------FKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 555 (770)
Q Consensus 496 ~P~yD~s~g~r~~--------------------~~~~~~~~~~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri 555 (770)
+.--|.+..-|.+ ...........-+|+||-.+..--+. ..+++||++++.+.|..|+.
T Consensus 86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~p-da~lkifl~A~~e~Ra~Rr~ 164 (233)
T 3r20_A 86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLP-DADVKIFLTASAEERARRRN 164 (233)
T ss_dssp ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCT-TCSEEEEEECCHHHHHHHHH
T ss_pred ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcC-CCCEEEEEECCHHHHHHHHH
Confidence 0000000000000 00000112215688899866532111 25799999999999999998
Q ss_pred HhcccccCcCcc--h--hhHHhhccchhhhccccccCccc-EEEcCC
Q 004177 556 QRDKSRMGCFMS--Q--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 597 (770)
Q Consensus 556 ~RD~~~rG~~l~--~--~q~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 597 (770)
.+... .|.... . .++...-......++.|.+..+| ++|+++
T Consensus 165 ~~l~~-~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs 210 (233)
T 3r20_A 165 AQNVA-NGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS 210 (233)
T ss_dssp HHHHH-TTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT
T ss_pred HHHHh-ccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC
Confidence 75432 233222 1 12222222233456677766665 777754
No 52
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.64 E-value=3.1e-08 Score=95.15 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=80.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 505 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~ 505 (770)
.+|+|+|++||||||+++.|++.++..+++.|.+..... ....+.+....+..|..+..-.+-.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~------------~~~~~~~~~~~l~~~~~vi~dr~~~~--- 66 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------------GNEKLFEHFNKLADEDNVIIDRFVYS--- 66 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT------------CHHHHHHHHHHHTTCCSEEEESCHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh------------HHHHHHHHHHHHHhCCCeEEeeeecc---
Confidence 478999999999999999999999999999998765422 12333344445555554422111110
Q ss_pred cCCccceeeccC---ccEEEEEccccchhhhhhcCCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhc
Q 004177 506 RSGFKELEVSED---CGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQH 582 (770)
Q Consensus 506 r~~~~~~~~~~~---~~VVIvEG~~~l~~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~ 582 (770)
....... ... +...+...........|..||++++.++.+.|...|. +......+...+...|...
T Consensus 67 -----~~v~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~-----r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 67 -----NLVYAKKFKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG-----DEYIEGKDIDSILELYREV 135 (173)
T ss_dssp -----HHHHTTTBTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS-----CSCCCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-----CcchhhhHHHHHHHHHHHH
Confidence 0000000 000 0000100001111235789999999999888877762 2222223444455555554
Q ss_pred cccccCcccEEEcCC
Q 004177 583 IEPHLVHAHLKIRND 597 (770)
Q Consensus 583 I~p~~~~ADivI~n~ 597 (770)
.... ..++++|+++
T Consensus 136 ~~~~-~~~~~~id~~ 149 (173)
T 3kb2_A 136 MSNA-GLHTYSWDTG 149 (173)
T ss_dssp HHTC-SSCEEEEETT
T ss_pred Hhhc-CCCEEEEECC
Confidence 3333 2578888865
No 53
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.61 E-value=2.6e-08 Score=100.27 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=35.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
|.+|+|+|++||||||+++.|++.+|..+++.|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 57899999999999999999999999999999999864
No 54
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.56 E-value=1.9e-07 Score=93.09 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=35.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.++.+|+|+||+||||||+++.|++.+|..+++.|++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~ 66 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSP 66 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccH
Confidence 4567999999999999999999999999998999988643
No 55
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.55 E-value=9.6e-08 Score=93.35 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
.+.+|+|+|++||||||+++.|++.++..+++.|++.+...... . -....+.+.+ ..|....... .
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~----~---~~~~~i~~~~---~~g~~~~~~~----~ 70 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSG----S---KDGEMIATMI---KNGEIVPSIV----T 70 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTT----C---TTHHHHHHHH---HTTCCCCHHH----H
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcC----C---HHHHHHHHHH---HCCCCCCHHH----H
Confidence 46799999999999999999999999999999998776421100 0 0001111111 1121110000 0
Q ss_pred CccCCccceeeccCccEEEEEccccchh---hh----hh--cCCeEEEEEcChhHHHHHHHHhcc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALHP---EI----RK--SLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~~---~l----~~--~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
..... ..+. ......+|+||...... .+ .. ..|..|++++|.++++.|...|+.
T Consensus 71 ~~~l~-~~i~-~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 71 VKLLK-NAID-ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHHHH-HHHH-TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHH-HHHH-hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 00000 0000 01246788998543321 12 22 468899999999999999888753
No 56
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.53 E-value=2.2e-07 Score=95.93 Aligned_cols=123 Identities=13% Similarity=-0.024 Sum_probs=73.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccc
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 500 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD 500 (770)
...+|++|+|+||+||||||+++.|++.++..++|.|+..+..-.. ++ .+..+.-..+..|..+.-....
T Consensus 25 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~-------~~---~~g~~i~~~~~~g~~~~~~~~~ 94 (243)
T 3tlx_A 25 LSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEK-------KT---ELGLKIKNIINEGKLVDDQMVL 94 (243)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTS-------SS---HHHHHHHHHHHTTCCCCHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhc-------cc---hHHHHHHHHHhcCCCCcHHHHH
Confidence 3557899999999999999999999999999999999887752110 00 0111111222333322111110
Q ss_pred cccCccCCccceeeccCccEEEEEccccchh---hhh-------hcCCeEEEEEcChhHHHHHHHHhc
Q 004177 501 LETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 501 ~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~---~l~-------~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
.....+. .......-+|++|...... .+. ...|..+++++|.++.+.|...|.
T Consensus 95 ~~~~~~l-----~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 95 SLVDEKL-----KTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHT-----TSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHH-----hcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 0000111 0011235688899433321 111 237899999999999998888775
No 57
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=1.2e-07 Score=94.38 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
++.+|+|+|++||||||+++.|++.++..++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 456889999999999999999999999999999987653
No 58
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.49 E-value=5.2e-07 Score=87.48 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
....+|+|+|++||||||+++.|+..+|..++++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccc
Confidence 346799999999999999999999999999999998764
No 59
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.48 E-value=9.6e-08 Score=94.16 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
.+.+|+|+|++||||||+++.|++.++..+++.|+++....... .+ ....+.+. +..|..+.... .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~----~~---~~~~i~~~---~~~g~~~~~~~----~ 76 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASE----SE---RSKLIRDI---MERGDLVPSGI----V 76 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHT----CH---HHHHHHHH---HHTTCCCCHHH----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhC----CH---HHHHHHHH---HHcCCcCCHHH----H
Confidence 36789999999999999999999999999999999876432100 00 00111111 11222211000 0
Q ss_pred CccCCccce-eeccCccEEEEEccccch---hhhhh---cCCeEEEEEcChhHHHHHHHHhcc
Q 004177 504 GARSGFKEL-EVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 504 g~r~~~~~~-~~~~~~~VVIvEG~~~l~---~~l~~---~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
..... ..+ ........+|+||..... ..+.. ..|..||++++.++++.|...|+.
T Consensus 77 ~~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 77 LELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00000 000 001235688999976543 12333 578999999999999988888753
No 60
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.47 E-value=2.9e-07 Score=91.45 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
..++.+|+|+|++||||||+++.|++.++..++++|++++...... + +..-+.+.+. +..|+.........
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~---~---~~~~~~i~~~---~~~g~~~~~~~~~~ 82 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRA---G---SQYGELIKNC---IKEGQIVPQEITLA 82 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHST---T---CSCHHHHHHH---HHTTCCCCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhcc---C---CHHHHHHHHH---HHcCCcCCHHHHHH
Confidence 3467899999999999999999999999999999998876421000 0 0000111111 11222110000000
Q ss_pred ccCccCCccceeeccCccEEEEEccccchh------hhhhcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 502 ETGARSGFKELEVSEDCGVIIFEGVYALHP------EIRKSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 502 s~g~r~~~~~~~~~~~~~VVIvEG~~~l~~------~l~~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
...... .. ....+.+.+|++|...... ......|..||+++|.++++.|...|+.
T Consensus 83 ~l~~~i--~~-~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~ 143 (203)
T 1ukz_A 83 LLRNAI--SD-NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK 143 (203)
T ss_dssp HHHHHH--HH-HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHH--Hh-hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc
Confidence 000000 00 0011225677888532211 1222368999999999999999888753
No 61
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.45 E-value=1e-07 Score=91.64 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|+|+|++||||||+++.|++.++..++++|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~ 37 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQK 37 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHH
Confidence 689999999999999999999999999999988754
No 62
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.42 E-value=1e-07 Score=93.25 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=33.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.+|+|+|++||||||+++.|++.+|..++++|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~ 39 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 39 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence 3588999999999999999999999999999998763
No 63
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=98.38 E-value=1.3e-06 Score=85.14 Aligned_cols=111 Identities=18% Similarity=0.314 Sum_probs=94.0
Q ss_pred CeEEEEE--eCceeeEEeeeeccccCeeeccccceEEe-hhhHHHHH-hhhhhhhhheeeeeeEEecCeEEEEEeccccC
Q 004177 658 DCIRVRI--CEGRFALLIREPLREGNFIIQPKVDFDIS-ISTVAGLL-NLGYQAVAYIEASAFIYQDGKILIEVDHLQDA 733 (770)
Q Consensus 658 ~~i~~r~--~~~r~~l~~~~~~~~~~~~~~p~~~f~~~-~~~~~gl~-~lgy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (770)
.++|||. .++++.|.+..+- +|....++..+++|. ...+..+| +||++....++.....|.-+++.+.+|+.+++
T Consensus 42 ~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~ 120 (165)
T 2dc4_A 42 KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGAIELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKA 120 (165)
T ss_dssp EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCC
Confidence 7999995 5899999999888 888888887777773 44444444 67999999998888888889999999999999
Q ss_pred CCceEEEecCC------HHHHHHhhhhcccccc-cccchhhccC
Q 004177 734 PSPYLQIKGVD------KEAVAAAGSTLKLDGS-YTTKVMSLAL 770 (770)
Q Consensus 734 ~~~~~~~~g~~------~~~v~~~~~~~~~~~~-~~~~~~~~~~ 770 (770)
+ .|+.|-..+ ++.+.+.+.+|||+.. .+++||+|++
T Consensus 121 g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell 163 (165)
T 2dc4_A 121 G-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELI 163 (165)
T ss_dssp E-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHC
T ss_pred c-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHh
Confidence 7 898998765 7889999999999987 8999999975
No 64
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=1.3e-06 Score=86.58 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
...+|||+|||||||||+++.|++.++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999999864
No 65
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.36 E-value=6.4e-07 Score=87.98 Aligned_cols=120 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
++.+|+|+|++||||||+++.|++.++..+++.|+++...... ++.....+.+. +..|+.+... ..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~---~~~g~~~~~~----~~ 73 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSS-------GSARGKKLSEI---MEKGQLVPLE----TV 73 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCHHHHHHHHH---HHTTCCCCHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHc-------CChHHHHHHHH---HHcCCcCCHH----HH
Confidence 5678999999999999999999999999999999887653110 00001111111 1223221100 00
Q ss_pred CccCCccce-eeccCccEEEEEccccchhh---h---hhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 504 GARSGFKEL-EVSEDCGVIIFEGVYALHPE---I---RKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 504 g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~---l---~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
..... ..+ ........+|+||....... + ....|..||++++.++.+.|...|.
T Consensus 74 ~~~~~-~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 74 LDMLR-DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHH-HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 00000 000 00112467889984332211 1 2456899999999999999887775
No 66
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=98.36 E-value=6.9e-07 Score=88.52 Aligned_cols=109 Identities=25% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCCeEEEEEeC--ceeeEEeeeeccccCeeeccccceEEe-hhhHHH-HHhhhhhhhhheeeeeeEEecCeEEEEEecc
Q 004177 655 TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDIS-ISTVAG-LLNLGYQAVAYIEASAFIYQDGKILIEVDHL 730 (770)
Q Consensus 655 ~~~~~i~~r~~~--~r~~l~~~~~~~~~~~~~~p~~~f~~~-~~~~~g-l~~lgy~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (770)
..+.|||+|..+ |++.+.+..|..++.. +++|. ...+.. |.+|||+.++.++....+|.-+++.|++|++
T Consensus 55 ~~~~~lRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v 128 (179)
T 3ghx_A 55 KQQISMVLREMNPSGIRLWIVKGPGAERCE------ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHL 128 (179)
T ss_dssp GGTCEEEEEEEETTCCEEEEEECSSSSBEE------EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred HCCcEEEEEEecCCCcEEEEEecCCCCcEE------EEEcCCHHHHHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEcc
Confidence 457799999985 7888888777766531 44444 223333 4599999999999999999999999999999
Q ss_pred ccCCCceEEEecCC---------HHHHHHhhhhccccc-ccccchhhccC
Q 004177 731 QDAPSPYLQIKGVD---------KEAVAAAGSTLKLDG-SYTTKVMSLAL 770 (770)
Q Consensus 731 ~~~~~~~~~~~g~~---------~~~v~~~~~~~~~~~-~~~~~~~~~~~ 770 (770)
++|+ +|+.|-... ++.+.+++.+|||+. .-+++||+|++
T Consensus 129 ~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl 177 (179)
T 3ghx_A 129 TGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp TTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred CCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHh
Confidence 9998 799997543 467888999999998 68999999974
No 67
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.36 E-value=2.8e-07 Score=88.90 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=34.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
..-+|+|+|++||||||+++.|++.+|.+++++|.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 356899999999999999999999999999999988754
No 68
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.36 E-value=9.7e-07 Score=87.72 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=36.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
...+++|+|+|++||||||+++.|++.++..+++.|++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~ 57 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR 57 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence 45678999999999999999999999999999999988764
No 69
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.36 E-value=2e-07 Score=91.14 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=34.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+..|.|+|++||||||+++.|++.++..+++.|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45788999999999999999999999999999998653
No 70
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.36 E-value=3.3e-08 Score=101.15 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=87.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc-cceec----cccccccCccccccc----cHHHHHHHHHHH-----
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL-ESYFK----SEQVKDFKYDDFSSL----DLSLLSKNISDI----- 488 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~-Ddfy~----~~~~~~~n~d~p~t~----D~~ll~~~L~~L----- 488 (770)
.+..+|+|.|++||||||+++.|++.-+...+.. +.... ........+..+..+ ....+...+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i 97 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN 97 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhccc
Confidence 4568999999999999999999998622111111 10000 000000000011110 001111122221
Q ss_pred ----hcCCCccccccccccCccCCccceeeccCccEEEEEccccch-hhhhhcCCeEEEEEcChhHHHHHHHHhcccccC
Q 004177 489 ----RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 563 (770)
Q Consensus 489 ----~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~-~~l~~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG 563 (770)
..|..+..++|.+++....+. . ..+..+.++++|+.+. +......|+.||+++|.++++.|...|+...
T Consensus 98 ~~~l~~~r~v~~dry~~s~~ayq~~-~---l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~-- 171 (230)
T 2vp4_A 98 KKLKIMERSIFSARYCFVENMRRNG-S---LEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE-- 171 (230)
T ss_dssp SSEEEEESCHHHHHHTHHHHHHHHT-S---SCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG--
T ss_pred cCceeecCCccccHHHHHHHHHHcC-C---CChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc--
Confidence 123445556666654322210 1 1223456667776643 2244568999999999999999987763210
Q ss_pred cCcchhhHHhhccchhhhccccc--cCccc-EEEcCC
Q 004177 564 CFMSQNDIMMTVFPMFQQHIEPH--LVHAH-LKIRND 597 (770)
Q Consensus 564 ~~l~~~q~~~~v~p~~~~~I~p~--~~~AD-ivI~n~ 597 (770)
...+..+|...+...|.+++..+ ...++ ++|+++
T Consensus 172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 11111256677788888876432 23344 677664
No 71
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.35 E-value=2.1e-07 Score=89.73 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=33.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.+|+|+|++||||||+++.|++.++..+++.|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHH
Confidence 4688999999999999999999999999999988754
No 72
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.34 E-value=5e-07 Score=90.62 Aligned_cols=116 Identities=15% Similarity=0.091 Sum_probs=66.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
.|+|+||+||||||+++.|++.++..+++.|++.+..-... +. .....-..+..|..+.-.........+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~-------~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~ 71 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG-------TE---LGLKAKSFMDQGNLVPDEVTIGIVHER 71 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT-------CH---HHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC-------CH---HHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999887531110 00 000111111222211100000000000
Q ss_pred CCccceeeccCccEEEEEccccch---hhhhh-------cCCeEEEEEcChhHHHHHHHHh
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH---PEIRK-------SLDLWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~---~~l~~-------~lD~~I~Vd~~~d~rL~Rri~R 557 (770)
+........+|++|..... ..+.. .+|..|+++++.++.+.|...|
T Consensus 72 -----l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 72 -----LSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp -----HTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred -----HhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 0000113467888853322 11222 3789999999999999998877
No 73
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.31 E-value=7.1e-08 Score=95.28 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=38.6
Q ss_pred hcCCeEEEEEcChhHHHHHHHHhcccccCcCcch---hhHHhhccchhhhcccccc-CcccEEEcCCC
Q 004177 535 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ---NDIMMTVFPMFQQHIEPHL-VHAHLKIRNDF 598 (770)
Q Consensus 535 ~~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~---~q~~~~v~p~~~~~I~p~~-~~ADivI~n~~ 598 (770)
...|..||++++.++.+.|...| |+..+. .++...+...|..+..++. ..++++|+++-
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 45789999999999998887655 322221 1344445556665555544 56899998764
No 74
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.30 E-value=1.2e-06 Score=86.69 Aligned_cols=131 Identities=12% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc-cccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 502 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~-vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s 502 (770)
++.+|+|+||+||||||+++.|++.+.+. -++..........+..+....--.+.+.+.. ....+..+..+.+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 81 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA---LIKDDQFIEYAEYVGN 81 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHH---HHHcCCeEEEEeECCe
Confidence 45689999999999999999999976321 1111111111000000000000011122211 1233444444444321
Q ss_pred cCccCCccce-eeccCccEEEEEccccchhhhhhcC-Ce-EEEEEc-ChhHHHHHHHHhc
Q 004177 503 TGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL-DL-WIAVVG-GVHSHLISRVQRD 558 (770)
Q Consensus 503 ~g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~l-D~-~I~Vd~-~~d~rL~Rri~RD 558 (770)
..... ...+ ........+|+|+.+.+...+...+ |. .+++.. +.+....|...|+
T Consensus 82 ~~g~~-~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~ 140 (207)
T 2j41_A 82 YYGTP-VQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140 (207)
T ss_dssp EEEEE-HHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC------------
T ss_pred ecCCC-HHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcC
Confidence 10000 0011 1122357899999887766666666 74 445543 3556666665554
No 75
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.30 E-value=9.9e-07 Score=86.05 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=33.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~ 462 (770)
+.+|.|+|++||||||+++.|++.++ ..+++.|++++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 46899999999999999999999988 788888877653
No 76
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.28 E-value=8.9e-07 Score=88.91 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=33.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|+|+||+||||||+++.|++.++..+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 588999999999999999999999999999988875
No 77
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.27 E-value=9.6e-07 Score=88.25 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC-ccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 501 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~-~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 501 (770)
.++.+|+|+|||||||||+++.|+..++. ...+....-+....+..+-.+..-.+.+.+.+ .+..|..+..+.+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER---KLKEGQFLEFDKYAN 86 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH---HHHTTCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH---HHHcCCCEEeHHhCC
Confidence 45678889999999999999999998742 21222111111111111100111122222222 223344443333321
Q ss_pred ccCccCCccce-eeccCccEEEEEccccchhhhhhcC---C-eEEEEE-cChhHHHHHHHHh
Q 004177 502 ETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL---D-LWIAVV-GGVHSHLISRVQR 557 (770)
Q Consensus 502 s~g~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~l---D-~~I~Vd-~~~d~rL~Rri~R 557 (770)
...... ...+ ........+|+++.......+...+ + ..||++ ++.+....|...|
T Consensus 87 ~~~~~~-~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R 147 (204)
T 2qor_A 87 NFYGTL-KSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR 147 (204)
T ss_dssp EEEEEE-HHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred CeecCC-HHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence 110000 0001 1223467888886554444455544 3 789998 6666655555443
No 78
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=98.26 E-value=8e-07 Score=88.09 Aligned_cols=113 Identities=15% Similarity=0.258 Sum_probs=90.9
Q ss_pred CCCeEEEE----EeCceeeEEeeeeccccCeeeccccceEEe--hhhHHHHH-hhhhhhhhheeeeeeEEecC-eEEEEE
Q 004177 656 ESDCIRVR----ICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLL-NLGYQAVAYIEASAFIYQDG-KILIEV 727 (770)
Q Consensus 656 ~~~~i~~r----~~~~r~~l~~~~~~~~~~~~~~p~~~f~~~--~~~~~gl~-~lgy~~~~~~~~~~~~~~~~-~~~~~~ 727 (770)
.+.|||+| ..++++.+.+..|..++....++-.+++|. ...+..+| +|||+.+..++.....|.-+ .+.|.+
T Consensus 45 ~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~l 124 (183)
T 2een_A 45 TDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVDKYFELLDRLGFKEVLKVVKTREKYYVEKGVTITL 124 (183)
T ss_dssp HTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEE
T ss_pred CCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEE
Confidence 35799999 667899999998888887777776666664 23344444 59999999998888888777 899999
Q ss_pred eccccCCCceEEEecC---------CHHHHHHhhhhcccccccccchhhccC
Q 004177 728 DHLQDAPSPYLQIKGV---------DKEAVAAAGSTLKLDGSYTTKVMSLAL 770 (770)
Q Consensus 728 ~~~~~~~~~~~~~~g~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~ 770 (770)
|+++.++. |+.|-.. .+..+.+.+.+||| +..+++||+|++
T Consensus 125 D~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell 174 (183)
T 2een_A 125 DEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELL 174 (183)
T ss_dssp EEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHH
T ss_pred EeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHH
Confidence 99999975 9788643 25678889999999 999999999874
No 79
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.25 E-value=1.2e-06 Score=88.04 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=31.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
..+|+|+|+.||||||+++.|++.||.++++ ++.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHH
Confidence 4699999999999999999999999999888 4444
No 80
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.23 E-value=1e-06 Score=86.29 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
.+.+|.|+|++||||||+++.|++.++..+++.|.+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~ 40 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK 40 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH
Confidence 5788999999999999999999999999888988774
No 81
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.19 E-value=3e-06 Score=83.34 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=36.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH-hCCccccccceeccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI-VGCEVVSLESYFKSE 463 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~-L~~~vis~Ddfy~~~ 463 (770)
.++.+|+|+|++||||||+++.|++. +|..++++|++....
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 34678999999999999999999998 799999999887653
No 82
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.15 E-value=2.9e-06 Score=82.69 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=29.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccceec
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 461 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~ 461 (770)
.+|.|.|++||||||+++.|++.++ +.+++.|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 5789999999999999999999887 56666666553
No 83
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.15 E-value=2.6e-06 Score=87.25 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=34.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
....+|+|+|++||||||+++.|++.+|..+++.|.+...
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~ 51 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLA 51 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHH
Confidence 3468999999999999999999999999998887765543
No 84
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.13 E-value=2.7e-06 Score=83.76 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++||+|||||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999999764
No 85
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.11 E-value=1.9e-06 Score=83.20 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=32.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH-HhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN-IVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~-~L~~~vis~Ddfy~ 461 (770)
|.+|.|.|++||||||+++.|++ .++..+++.|.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~ 39 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHH
Confidence 57899999999999999999999 67888888887643
No 86
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.11 E-value=4.1e-06 Score=84.48 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
++.+|.|.|++||||||+++.|++.++..++++|++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 567899999999999999999999999999999998874
No 87
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.11 E-value=3.4e-06 Score=82.43 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 458 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L---~~~vis~Dd 458 (770)
+|+|+|++||||||+++.|++.+ |..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999988 888887763
No 88
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.10 E-value=1.2e-07 Score=99.76 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=32.9
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhhhc
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCS 633 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v~~ 633 (770)
+-+++.|+.+......+++++++.|+.+..+.....++.+.+.+
T Consensus 200 tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~l~~ 243 (266)
T 4g1u_C 200 AVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQ 243 (266)
T ss_dssp EEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCHHHHHH
T ss_pred EEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCcHHHHH
Confidence 44677787777667778888899998888888877777655543
No 89
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.10 E-value=3.2e-06 Score=82.46 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.+.+|+|+|++||||||+++.|++.++..+++.|++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 457899999999999999999999999999999887764
No 90
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.08 E-value=3.3e-06 Score=82.25 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=34.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 463 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~ 463 (770)
.+.+|.|+|++||||||+++.|++.++..+++.|++....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 3456779999999999999999999999999999876643
No 91
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.05 E-value=2.4e-07 Score=97.98 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=34.0
Q ss_pred ccEEEcCCCCCCCCccchhhhhccccccchhhhccCCChhhh
Q 004177 590 AHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKF 631 (770)
Q Consensus 590 ADivI~n~~~~~l~~e~~~~~lk~~~~~~~~~~~~~mt~e~v 631 (770)
+-+++.++.+......+++++++.|+.+..+.+...+++..+
T Consensus 196 tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 237 (275)
T 3gfo_A 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV 237 (275)
T ss_dssp EEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHHH
T ss_pred EEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 457888999888888899999999999888888777765543
No 92
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.04 E-value=1.3e-05 Score=83.31 Aligned_cols=105 Identities=11% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH---hCCccc--cccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI---VGCEVV--SLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 498 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~---L~~~vi--s~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 498 (770)
++.+|.|+|++||||||+++.|+.. +|..++ +.|.+.... .. +...+ ...+........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l--~~--~~~~~---e~~~~~~~~~~i--------- 66 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF--PV--WKEKY---EEFIKKSTYRLI--------- 66 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS--SS--CCGGG---HHHHHHHHHHHH---------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH--hh--hhHHH---HHHHHHHHHHHH---------
Confidence 4678999999999999999999997 566655 767654221 11 21110 011111110000
Q ss_pred cccccCccCCccceeeccCccEEEEEccccch---hhhhhc------CCeEEEEEcChhHHHHHHHHhc
Q 004177 499 FDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS------LDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 499 yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~l~~~------lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
.. .... ..+|++|..... ..+... -+..||++++.++.+.|...|.
T Consensus 67 -----------~~--~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 67 -----------DS--ALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp -----------HH--HHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred -----------HH--HhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 00 0122 678888865432 222222 2689999999999988877653
No 93
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.04 E-value=6.4e-06 Score=83.13 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=35.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 463 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~ 463 (770)
+++.|.|.|++||||||+++.|++.++..++++|++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~ 43 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREA 43 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHH
Confidence 4567889999999999999999999999999999987653
No 94
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.03 E-value=1.6e-05 Score=82.57 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=32.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
.+|.|+||+||||||+++.|++.++..++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 47889999999999999999999999999999974
No 95
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.02 E-value=6.5e-06 Score=83.48 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=35.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
++.+|.|.|++||||||+++.|++.++..+++.|+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 567899999999999999999999999999999988765
No 96
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.99 E-value=1e-05 Score=80.40 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=30.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 458 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd 458 (770)
++.+|+|+|++||||||+++.|++.++...++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~ 43 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKH 43 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 56799999999999999999999998766666654
No 97
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.97 E-value=1.2e-05 Score=80.69 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.|.|.|++||||||+++.|++.++..+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 478999999999999999999999999999988865
No 98
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.96 E-value=1.3e-05 Score=81.38 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|.|.|++||||||+++.|++.++..+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~ 37 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFRE 37 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHH
Confidence 688999999999999999999999999999988764
No 99
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.94 E-value=9.7e-06 Score=79.42 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=23.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+++|+||||||||||++.|...+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35889999999999999999999764
No 100
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=1.1e-05 Score=82.10 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=17.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHH-HHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMA-NIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La-~~L~~ 451 (770)
...+|||+|||||||||+++.|+ ..+..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 34689999999999999999999 87643
No 101
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.91 E-value=4.2e-06 Score=84.46 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.++.+|.|.|++||||||+++.|++.++...++.|+++..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567888999999999999999999999998999988765
No 102
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.91 E-value=7.6e-06 Score=83.46 Aligned_cols=124 Identities=10% Similarity=0.015 Sum_probs=71.7
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccc
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 500 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD 500 (770)
+..++.+|.|.||+||||||.|+.|++.++...||+.|.++..-... + ++-.+.-..+..|+.+.--...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~-------t---~lg~~~~~~~~~G~lVpde~~~ 94 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSG-------S---PKGKELKAMMERGELVPLEVVL 94 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTC-------C---HHHHHHHHHHHHTCCCCHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcC-------C---chHHHHHHHHhcCCCCCHHHHH
Confidence 34578899999999999999999999999999999988887531110 0 1111111223334433211110
Q ss_pred cccCccCCccceeeccCccEEEEEccccch------hhhhhcCCeEEEEEcChhHHHHHHHHhc
Q 004177 501 LETGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 501 ~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~------~~l~~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
....++. ........-+|++|.---. .......|..++++++.++.+.|...|.
T Consensus 95 ~lv~~~l----~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 95 ALLKEAM----IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHHH----HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHHHHH----hhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 0000000 0011123468888853211 1222346899999999998888876663
No 103
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.90 E-value=2e-05 Score=77.21 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=26.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh---CCccccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL 456 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L---~~~vis~ 456 (770)
++|+|.|++||||||+++.|++.+ |..++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 378999999999999999999998 8776654
No 104
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.89 E-value=1e-05 Score=84.20 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
..+|+|+|++||||||+++.|++.++..++++|.++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~ 85 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ 85 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH
Confidence 34788999999999999999999999998999887753
No 105
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.88 E-value=6.6e-06 Score=82.61 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.++.+|+|+|||||||||+++.|+..++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45678999999999999999999998754
No 106
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.85 E-value=4.5e-07 Score=99.40 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||+++|+..+.+.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 4589999999999999999999987654
No 107
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=97.82 E-value=3.7e-05 Score=75.73 Aligned_cols=122 Identities=22% Similarity=0.232 Sum_probs=87.6
Q ss_pred ceeeecCCCCCCCCCCCCCCeEEEEEeCc--eeeEEeeeeccccCeeeccccceEEe--hhhHHHHHhhhhhhhhheeee
Q 004177 639 IDMYLRLPGIPTNGQLTESDCIRVRICEG--RFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEAS 714 (770)
Q Consensus 639 ~~~Yl~~~~~~~~~~~~~~~~i~~r~~~~--r~~l~~~~~~~~~~~~~~p~~~f~~~--~~~~~gl~~lgy~~~~~~~~~ 714 (770)
.+.|+..|.-.. ...+.++|+|..++ +..|....|- +++..+++|. -.+..-|.+|||+.++.++..
T Consensus 42 ~d~Yfd~p~~~l---~~~~~~lRiR~~~~~~~~~lt~kg~~------~~~e~e~~v~~~~~~~~~l~~lg~~~~~~~~k~ 112 (179)
T 3n10_A 42 KDIYLDANGQDL---AKQQISMVLREMNPSGIRLWIVKGPG------AERCEASNIEDVSKVQSMLATLGYHPAFTIEKQ 112 (179)
T ss_dssp EEEEEECTTCTT---GGGTCEEEEEEEETTCCEEEEEECSS------SSBEEEEECSCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEeCCChhH---HhCCceEEEEecCCCceEEEEEcCCc------cccceeeccCCHHHHHHHHHhCCCeEEEEEEEE
Confidence 355655553221 14477999998754 4445443332 2344444444 345566778999999999999
Q ss_pred eeEEecCeEEEEEeccccCCCceEEEecCC---------HHHHHHhhhhccccc-ccccchhhccC
Q 004177 715 AFIYQDGKILIEVDHLQDAPSPYLQIKGVD---------KEAVAAAGSTLKLDG-SYTTKVMSLAL 770 (770)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~v~~~~~~~~~~~-~~~~~~~~~~~ 770 (770)
..+|.-+.+.|++|+.+.++ +|+.|-... ++.+.+++.+|||+. .-+++||+|+|
T Consensus 113 R~~~~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 113 RSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EEEEEECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 99999999999999999997 598886532 467889999999975 67899999975
No 108
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.82 E-value=5.8e-07 Score=98.37 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 3589999999999999999999987654
No 109
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.81 E-value=2.7e-05 Score=79.41 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=35.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
..+..|.|.|++||||||+++.|++.++..++++|++++.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 4567899999999999999999999999999999988764
No 110
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.80 E-value=3.5e-05 Score=74.40 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=30.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcc--ccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~v--is~Ddfy~ 461 (770)
+.+|.|+|++||||||+++.|++.++... ++.|++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 45788999999999999999999987543 35777643
No 111
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.78 E-value=2.4e-06 Score=90.38 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3489999999999999999999987543
No 112
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.78 E-value=4.5e-05 Score=75.74 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
.++.+|+|+|++||||||+++.|++.++...++.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3578999999999999999999999886444444433
No 113
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.78 E-value=8.3e-07 Score=91.89 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=24.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
-++||.||||||||||.+.|+..+.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 689999999999999999999987543
No 114
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.77 E-value=1e-06 Score=97.21 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=27.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
--+++|.||||||||||.+.|+..+.+. ++..++.
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~ 63 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIG 63 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEEEEC
Confidence 3589999999999999999999987654 4444443
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=8.9e-05 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=31.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--ccccccee
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYF 460 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L---~~~--vis~Ddfy 460 (770)
+..++.+|+|.|||||||||+++.|+..+ |.. .++.|++.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 34568899999999999999999999988 433 45555543
No 116
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.75 E-value=2.4e-05 Score=80.37 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=68.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCcccccccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 503 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~ 503 (770)
..+-+||.|++||||||+++.|++.++..+||+++.++..-... + ++-.+.-..+..|+.+.-.......
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~-------t---~lG~~i~~~~~~G~lvpdei~~~ll 76 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG-------T---PLGVEAKTYMDEGKLVPDSLIIGLV 76 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT-------C---HHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC-------C---hHHHHHHHHHhhccccccHHHHHHH
Confidence 35678999999999999999999999999999999887531100 0 0001111111222221110000000
Q ss_pred CccCCccceeeccCccEEEEEccccch---hhhh---hcCCeEEEEEcChhHHHHHHHHhcc
Q 004177 504 GARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 559 (770)
Q Consensus 504 g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~l~---~~lD~~I~Vd~~~d~rL~Rri~RD~ 559 (770)
.++. ......+-+|++|.---. ..+. ...|..|+++++.++.+.|...|..
T Consensus 77 ~~~l-----~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 77 KERL-----KEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp HHHH-----HSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred HHHH-----hCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 0000 000012346788853211 1222 2478999999999999999888754
No 117
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.75 E-value=2.4e-05 Score=82.48 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=31.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccee
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYF 460 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~Ddfy 460 (770)
|.+|.|+|++||||||+++.|++.+ +..++++|.+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHH
Confidence 4688999999999999999999974 88889999654
No 118
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.73 E-value=6.1e-05 Score=74.44 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
++.+|.|.|++||||||+++.|++.++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 35789999999999999999999998753
No 119
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.73 E-value=3.5e-05 Score=74.67 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
++.+|.|+|++||||||+++.|++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999987755
No 120
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=1.1e-05 Score=77.69 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+.+|+|+||+||||||+++.|+..+++.++++|.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 3579999999999999999999999998888887754
No 121
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.71 E-value=2.8e-06 Score=88.69 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3489999999999999999999977543
No 122
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.64 E-value=2.1e-06 Score=94.08 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 3589999999999999999999987644
No 123
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.63 E-value=5.6e-05 Score=76.30 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=66.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceeccccccccCccccccccHHHHHHHHHHHhcCCCccccccccccCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 506 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r 506 (770)
+|.|.||+||||+|.|+.|++.+|.+.||+.|.++..-... + ++-.+.-..+..|+.+.--........+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~-------t---~lg~~~~~~~~~G~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKG-------T---PLGKKAKEYMERGELVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHT-------C---HHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhc-------C---hhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence 57789999999999999999999999999988887531100 0 0111111222334332111100000011
Q ss_pred CCccceeeccCccEEEEEccccch-------hhhh---hcCCeEEEEEcChhHHHHHHHHhc
Q 004177 507 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRD 558 (770)
Q Consensus 507 ~~~~~~~~~~~~~VVIvEG~~~l~-------~~l~---~~lD~~I~Vd~~~d~rL~Rri~RD 558 (770)
. ...+-+|++|.---. ..+. -.+|..++++++.+.-+.|...|.
T Consensus 72 l--------~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 72 F--------PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp C--------CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred h--------ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 1 112347888854211 1111 236889999999999888887774
No 124
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.61 E-value=2.5e-06 Score=93.92 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCC
Confidence 3589999999999999999999987543
No 125
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.57 E-value=6.9e-05 Score=83.51 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
..+.+|.|+|++||||||+++.|++.++..+++.|.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4577888999999999999999999999999999887
No 126
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.56 E-value=2.9e-06 Score=92.91 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 3589999999999999999999987644
No 127
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.55 E-value=0.00043 Score=70.70 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=26.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
....+|.|.|++||||||+++.|++.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999999999864
No 128
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.55 E-value=3.8e-06 Score=91.66 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCCCC
Confidence 3489999999999999999999987654
No 129
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.54 E-value=2.8e-06 Score=93.45 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 3489999999999999999999987643
No 130
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.53 E-value=3.3e-06 Score=92.28 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3489999999999999999999987644
No 131
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.53 E-value=3.9e-06 Score=87.67 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3489999999999999999999977543
No 132
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.52 E-value=3.4e-06 Score=92.23 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||.+.|+..+.+.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3589999999999999999999977543
No 133
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.51 E-value=6.9e-06 Score=86.14 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3589999999999999999999977543
No 134
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.48 E-value=0.00021 Score=71.06 Aligned_cols=124 Identities=16% Similarity=0.183 Sum_probs=62.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccceecccc--ccccCccccccccHHHHHHHHHHHhcCCCccccccccc-cC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ--VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE-TG 504 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~~~--~~~~n~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s-~g 504 (770)
|.|+||||||||||++.|.+...-. +..-.-|-++. .++.+-.+..-.+.+. .-+.+.+|+-++.-.|.-. -|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~-~~~svs~TTR~pR~gE~~G~dY~Fvs~~e---F~~~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDS-FGFSVSSTTRTPRAGEVNGKDYNFVSVDE---FKSMIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTT-EEECCCEECSCCCTTCCBTTTBEECCHHH---HHHHHHTTCEEEEEEETTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCC-eEEEEEEeccCCCCCCcCCceeEeecHHH---HHHHHHcCCEEEEEEEcCceee
Confidence 3469999999999999998765311 01111111111 1111111111122222 2233445655554443211 11
Q ss_pred ccCCccce-eeccCccEEEEEccccchhhhhhcC--C-eEEEEEcChhHHHHHHHHh
Q 004177 505 ARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL--D-LWIAVVGGVHSHLISRVQR 557 (770)
Q Consensus 505 ~r~~~~~~-~~~~~~~VVIvEG~~~l~~~l~~~l--D-~~I~Vd~~~d~rL~Rri~R 557 (770)
... ..+ ........+|+++-..+...+...+ + ..||+.+|....|.+|+..
T Consensus 80 t~~--~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 80 STV--ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp EEH--HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred eec--ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 110 011 1123357888888766665565543 2 5688988877777777654
No 135
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.44 E-value=1.2e-05 Score=84.26 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
-+++|.||||||||||.+.|+..+ +.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CC
Confidence 489999999999999999999987 54
No 136
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=3.7e-05 Score=78.69 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=33.1
Q ss_pred cCCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhcccc
Q 004177 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 585 (770)
Q Consensus 536 ~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p 585 (770)
..|+.||++++.+..+.|...|.... ......++...+...|..+..+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~--e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREE--EKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTT--TTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcc--cccCCHHHHHHHHHHHHHHHhh
Confidence 57999999999999998876653211 1101135677788888887664
No 137
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=3.9e-05 Score=74.28 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=32.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+|.|+|++||||||+++.|++.++..+++.|+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 588999999999999999999999999999988753
No 138
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.42 E-value=0.00025 Score=81.79 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=69.6
Q ss_pred cCCCCcccchhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----CccccccceeccccccccCc
Q 004177 397 PMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKY 470 (770)
Q Consensus 397 ~~~~~~~~~e~~~~~~~~i~~l~~-~~~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy~~~~~~~~n~ 470 (770)
..|+|+..-+. .+...+... ....+.+|.++|++||||||+++.|++.++ +.+++.|.+-..- .+...|
T Consensus 347 ~~p~~~~r~eV----~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-~~~~~f 421 (546)
T 2gks_A 347 KLPEWFTRPEV----AEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-SRGLGF 421 (546)
T ss_dssp CCCTTTSCHHH----HHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-CTTCCS
T ss_pred CCCccccchhH----HHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-cccccc
Confidence 45777765543 122222221 223578999999999999999999999875 2556666542210 011111
Q ss_pred cccccccHHHHHHHHHHHhcCCCccccccccccCccCCccceeeccCccEEEEEccccch---hhhhhcC---C-eEEEE
Q 004177 471 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---D-LWIAV 543 (770)
Q Consensus 471 d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~s~g~r~~~~~~~~~~~~~VVIvEG~~~l~---~~l~~~l---D-~~I~V 543 (770)
.. .+... .+..+.. + . .. .......+|+++..++. ...+..+ | ..|++
T Consensus 422 ~~---~er~~---~l~~i~~---~------------~--~~--~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L 476 (546)
T 2gks_A 422 SK---EDRIT---NILRVGF---V------------A--SE--IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFV 476 (546)
T ss_dssp SH---HHHHH---HHHHHHH---H------------H--HH--HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred cH---HHHHH---HHHHHHH---H------------H--HH--HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 11 11111 1111110 0 0 00 01124578888766543 2344444 6 78999
Q ss_pred EcChhHHHHHH
Q 004177 544 VGGVHSHLISR 554 (770)
Q Consensus 544 d~~~d~rL~Rr 554 (770)
+++.++.+.|.
T Consensus 477 ~~~~e~~~~Rl 487 (546)
T 2gks_A 477 DAPVEVCEERD 487 (546)
T ss_dssp ECCGGGHHHHC
T ss_pred eCCHHHHHHHh
Confidence 99999887774
No 139
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.41 E-value=3.9e-06 Score=87.46 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.-++||.||||||||||.+.|+..+.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 348999999999999999999997754
No 140
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=97.40 E-value=0.00037 Score=69.32 Aligned_cols=109 Identities=15% Similarity=0.279 Sum_probs=82.6
Q ss_pred CCCCeEEEEEeC--ceeeEEeeeeccccCeeeccccceEEe-hhhHHHHHh-hhhhhhhheeeeeeEEecCeEEEEEecc
Q 004177 655 TESDCIRVRICE--GRFALLIREPLREGNFIIQPKVDFDIS-ISTVAGLLN-LGYQAVAYIEASAFIYQDGKILIEVDHL 730 (770)
Q Consensus 655 ~~~~~i~~r~~~--~r~~l~~~~~~~~~~~~~~p~~~f~~~-~~~~~gl~~-lgy~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (770)
..+.+||+|..+ |++.+.+..|..++.. +++|. ...+..+|. |||+.+..++-....|.-+.+.|.+|++
T Consensus 57 ~~~~aLRiR~~~~~~~~~~t~Kgp~~~~~~------e~~v~d~~~~~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~ 130 (189)
T 2aca_A 57 QQGKSLVLREIQPAGIKLWIVKGPEADRCE------ATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFL 130 (189)
T ss_dssp HTTCEEEEEEEETTTEEEEEEECSSTTBEE------EEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred hCCeEEEEEEecCCCcEEEEEcCCCcCceE------EEecCCHHHHHHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcc
Confidence 446799999864 4566677777766632 34442 334555554 9999999998888888888999999999
Q ss_pred ccCCCceEEEe-----cCC----HHHHHHhhhhcccccc-cccchhhccC
Q 004177 731 QDAPSPYLQIK-----GVD----KEAVAAAGSTLKLDGS-YTTKVMSLAL 770 (770)
Q Consensus 731 ~~~~~~~~~~~-----g~~----~~~v~~~~~~~~~~~~-~~~~~~~~~~ 770 (770)
+.++ .|+-|- |.+ +..+.+.+.+|||... -+++||++++
T Consensus 131 ~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll 179 (189)
T 2aca_A 131 DGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEIL 179 (189)
T ss_dssp TTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSS
T ss_pred cCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHH
Confidence 9997 797774 222 6788999999999874 7899999975
No 141
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.40 E-value=0.00024 Score=69.33 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=25.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++.+|.|.|++||||||+++.|+..++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999875
No 142
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.39 E-value=0.00014 Score=76.95 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=34.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh--CCccccccceec
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFK 461 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L--~~~vis~Ddfy~ 461 (770)
...|.+|.|+|||||||||+++.|+..+ +...||.|.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 3467899999999999999999999988 677888887764
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.27 E-value=9.5e-05 Score=72.19 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc--ccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~--vis~Ddfy 460 (770)
.+..+|+|+|||||||||+++.|++.++.. .+++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 346789999999999999999999875432 55666654
No 144
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.25 E-value=0.00013 Score=78.16 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=34.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--ecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~ 462 (770)
+.+|.|+||+|||||||+..|++.++..+||.|.+ |+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 56888999999999999999999999999999987 765
No 145
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.24 E-value=0.00011 Score=75.42 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
+|.+|+|.||+||||||+++.|++.+|...++.++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 47899999999999999999999999877666665544
No 146
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.17 E-value=0.00062 Score=67.56 Aligned_cols=115 Identities=7% Similarity=0.067 Sum_probs=75.6
Q ss_pred CCCCcccccHHHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCch
Q 004177 10 EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVH 88 (770)
Q Consensus 10 d~d~Pda~D~~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d 88 (770)
+++.++++|...+.+.+..+.++. ..|.. .. . .....+.++||+||.+++. +.+.+.+|..||++++.+
T Consensus 72 ~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~--~~-----~-~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~ 141 (207)
T 2qt1_A 72 QYDVLEALNMEKMMSAISCWMESA--RHSVV--ST-----D-QESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYE 141 (207)
T ss_dssp CCSSGGGBCHHHHHHHHHHHHHHH--TTSSC--CC-----------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHH
T ss_pred hhHHHHHhHHHHHHHHHHHHHhCC--CCCCc--CC-----C-eeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHH
Confidence 445778899999998887765431 11211 11 1 1114457799999988876 678889999999999999
Q ss_pred hHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEE--EeCC
Q 004177 89 FSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIR--INNR 134 (770)
Q Consensus 89 ~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiV--I~~~ 134 (770)
+++.|+..|........+.+..++++.|..+++-.+..||.+ |+++
T Consensus 142 ~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 142 ECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 999998887532111122333456777776665555667766 7765
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.0002 Score=73.95 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccee
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYF 460 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~--~~vis~Ddfy 460 (770)
...|.+|.|+|++||||||+++.|+..++ ..+++.|.+-
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 44678999999999999999999999986 4566777764
No 148
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.00026 Score=68.70 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=28.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLE 457 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L---~~~vis~D 457 (770)
+..+|+|+|++||||||+++.|+..+ |.+++.+|
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 46789999999999999999999988 76655444
No 149
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.14 E-value=0.00022 Score=76.40 Aligned_cols=40 Identities=38% Similarity=0.625 Sum_probs=35.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce--ecc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 462 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf--y~~ 462 (770)
..+.+|.|+||+|||||||+..|++.++..+||.|.+ |+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 4567889999999999999999999999999999985 665
No 150
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.12 E-value=0.0002 Score=77.20 Aligned_cols=35 Identities=37% Similarity=0.672 Sum_probs=32.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
+.+|.|+||+||||||++..|++.++..++++|++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 46889999999999999999999999999999987
No 151
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.12 E-value=2.3e-05 Score=91.52 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 358999999999999999999997754
No 152
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.12 E-value=0.00021 Score=79.18 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=35.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--eeccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKSE 463 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Dd--fy~~~ 463 (770)
+.+|+|+||+|||||||+..|+..++..+||+|. +|+.-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l 42 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDI 42 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceeccc
Confidence 4688999999999999999999999999999998 67763
No 153
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00019 Score=70.22 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=29.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC-ccccccceec
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFK 461 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~-~vis~Ddfy~ 461 (770)
.+++|+|||||||||+++.|+..++. ..++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 47899999999999999999987654 5667776654
No 154
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.07 E-value=0.00021 Score=73.46 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4589999999999999999999987654
No 155
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.01 E-value=0.00027 Score=76.54 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
.+.+|.|+||+|||||||+..|++.++..+||.|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456888999999999999999999999999999987
No 156
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.00 E-value=0.00028 Score=69.44 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLE 457 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L-~~~vis~D 457 (770)
++.+|+|.|++||||||+++.|++.+ |..+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46789999999999999999999988 45555543
No 157
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.97 E-value=0.0015 Score=76.28 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLE 457 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L---~~~vis~D 457 (770)
++.+|.|+|.+||||||+++.|++.| |..++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 67899999999999999999999998 76665554
No 158
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.89 E-value=0.00033 Score=71.33 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|+..+.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3489999999999999999999977543
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.88 E-value=0.0015 Score=65.40 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+..+|+|+||||||||||++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456888999999999999999998764
No 160
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.87 E-value=0.0005 Score=68.72 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC------Cccccccce
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESY 459 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~------~~vis~Ddf 459 (770)
...+.+|.|.|++||||||+++.|++.++ ..+++.|.+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34578999999999999999999999886 445555554
No 161
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.86 E-value=0.00049 Score=68.64 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.-++||.||||||||||++.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999999875
No 162
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.85 E-value=0.00048 Score=67.71 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++|.||||||||||++.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999987
No 163
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.78 E-value=0.00046 Score=72.05 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4589999999999999999999987643
No 164
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.77 E-value=0.00052 Score=71.01 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3489999999999999999999987654
No 165
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.77 E-value=0.00079 Score=69.37 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.++.+|.|.|++||||||+++.|++.++.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999998853
No 166
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.77 E-value=0.00058 Score=70.37 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.--++||.||||||||||++.|+..+.+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 55 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPT 55 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34589999999999999999999977543
No 167
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.76 E-value=0.00055 Score=70.49 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||.+.|+..+.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3489999999999999999999977543
No 168
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.73 E-value=8.9e-05 Score=86.54 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||.+.|+..+.+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 3458999999999999999999997754
No 169
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.72 E-value=0.00078 Score=68.44 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=24.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+..+++|+||||||||||++.|...+.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45678999999999999999999998753
No 170
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.69 E-value=0.001 Score=64.25 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...-+++|.||+|||||||++.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456799999999999999999999988
No 171
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.69 E-value=0.00069 Score=71.11 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--+++|.||||||||||++.|+..+.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3489999999999999999999987643
No 172
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.69 E-value=0.00059 Score=71.40 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|+..+.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 4589999999999999999999987543
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.68 E-value=0.00066 Score=67.46 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=22.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+++|+||||||||||++.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35788999999999999999998764
No 174
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.66 E-value=0.00053 Score=69.53 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
-++||.||||||||||++.|+..+.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 478999999999999999999977543
No 175
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.63 E-value=0.0008 Score=67.98 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..+++|.||||||||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45688999999999999999999977
No 176
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.59 E-value=0.0024 Score=73.93 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=30.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC----C--ccccccceec
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG----C--EVVSLESYFK 461 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~----~--~vis~Ddfy~ 461 (770)
.++.+|.|+|++||||||+++.|++.|+ . .+++.|.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 3578999999999999999999999875 2 3555565443
No 177
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.56 E-value=0.00082 Score=68.68 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||.+.|+..+.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 3489999999999999999999987543
No 178
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.53 E-value=0.0023 Score=67.27 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=54.7
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHh--hhccccccCCcccEEEeCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPL--FRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~--~~~yI~P~k~~ADiVI~~~~ 135 (770)
.++||+||.+++...+.+.+|+.|||++|.++++.|+..|+ +++.+++.+++... ...++ ..||+||+|+.
T Consensus 181 ~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q~~~~~~~----~~AD~vIdn~~ 253 (281)
T 2f6r_A 181 KTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQMSGQQLV----EQSNVVLSTLW 253 (281)
T ss_dssp CCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTSCCHHHHH----HTCSEEEECSS
T ss_pred CCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHcCChHhhH----hhCCEEEECCC
Confidence 56899999987766677889999999999999999999986 34677777766322 11222 46999999864
No 179
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.52 E-value=0.00084 Score=71.82 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 4589999999999999999999987654
No 180
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.00066 Score=67.64 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=66.4
Q ss_pred cccccHHHHHHH----HHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCCeEEEEecCchh
Q 004177 14 LDSIDFDALVQN----LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF 89 (770)
Q Consensus 14 Pda~D~~~l~~~----L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~ 89 (770)
+.++|.+.|.+. ...++..+.+..|.++.....+... ..++||+||.+++...+...+|..|||++|.++
T Consensus 69 ~g~ldr~~L~~~vF~~~~~~~~l~~i~hP~i~~~~~~~~~~------~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~ 142 (192)
T 2grj_A 69 DGKVNRKKLAGIVFESRENLKKLELLVHPLMKKRVQEIINK------TSGLIVIEAALLKRMGLDQLCDHVITVVASRET 142 (192)
T ss_dssp SSSBCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHT------CCEEEEEECTTTTTTTGGGGCSEEEEEECCHHH
T ss_pred CCCcCHHHHHHHHhCCHHHHHHHHhhhCHHHHHHHHHHHHH------cCCEEEEEEeceeecChHHhCCEEEEEECCHHH
Confidence 456777666652 2223334456677666544333211 146899999888876788899999999999999
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCC
Q 004177 90 SLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 90 rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
++.|++. .-.|. |.++.++.||+||+|+.
T Consensus 143 r~~Rli~--------------~q~~~---~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 143 ILKRNRE--------------ADRRL---KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp HHHHCSS--------------HHHHH---TTCTTCCCCSEEEECSS
T ss_pred HHHHHHH--------------hcCCc---hhhhHHhcCCEEEECCC
Confidence 9999821 11222 35666789999999873
No 181
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.52 E-value=0.0014 Score=63.36 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMA 446 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La 446 (770)
+.-+++|.||||||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 46799999999999999999743
No 182
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.48 E-value=0.0007 Score=69.56 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=23.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
--++||.||||||||||++.|+..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34899999999999999999998764
No 183
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.45 E-value=0.0014 Score=68.61 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
--++||.||||||||||++.|+..+
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999999963
No 184
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.45 E-value=0.00094 Score=69.14 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
--++||.||||||||||++.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999996
No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.44 E-value=0.0031 Score=61.05 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcC--CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 411 SVQAIQALLENK--GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 411 ~~~~i~~l~~~~--~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+...++...++. .....++|.||+|||||||+++++..+
T Consensus 22 ~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 22 ALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 444455544432 235688999999999999999999876
No 186
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.37 E-value=0.0017 Score=69.25 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
++.+|+|.|||||||||+++.|+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 567999999999999999999999874
No 187
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.35 E-value=0.0035 Score=63.44 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=57.1
Q ss_pred CcEEEEEecccch-HHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHH---HHhhhccccccCCcccEEEeC
Q 004177 58 SGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 133 (770)
Q Consensus 58 ~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v---~p~~~~yI~P~k~~ADiVI~~ 133 (770)
.++|++|.-.++. ..+..++|..|+|++|.++++.|.+.|| +.+.+++..++ .|. ++.+..||+||+|
T Consensus 112 ~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~Q~~~-----eek~~~AD~VIdN 183 (210)
T 4i1u_A 112 GPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIARQATR-----EARLAAADDVIVN 183 (210)
T ss_dssp SSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHHSCCH-----HHHHHTCSEEEEC
T ss_pred CCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHHcCCh-----HHHHHhCCEEEEC
Confidence 4689999998888 8888999999999999999999999998 45678877765 233 2335789999998
Q ss_pred C
Q 004177 134 R 134 (770)
Q Consensus 134 ~ 134 (770)
+
T Consensus 184 ~ 184 (210)
T 4i1u_A 184 D 184 (210)
T ss_dssp S
T ss_pred C
Confidence 7
No 188
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.34 E-value=0.0015 Score=68.09 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.-++||.||||||||||++.|+..+.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999998764
No 189
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.0011 Score=65.77 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999885
No 190
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.31 E-value=0.0022 Score=69.19 Aligned_cols=28 Identities=36% Similarity=0.459 Sum_probs=25.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++.+|+|.|||||||||+++.|+..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999873
No 191
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.31 E-value=0.0019 Score=67.76 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.+||.||||||||||.+.|.+...+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67999999999999999999997743
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.28 E-value=0.0014 Score=65.98 Aligned_cols=24 Identities=50% Similarity=0.397 Sum_probs=22.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.-++||.||||||||||++.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999987
No 193
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.28 E-value=0.0013 Score=68.11 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 348999999999999999999987654
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.28 E-value=0.0023 Score=68.25 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
++.+++|.|||||||||+++.|+..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999999873
No 195
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.26 E-value=0.00012 Score=79.34 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhCCCCccccccccccCcccCCeEEEcCCCcEEEEEecccchHHhhhcCCeEEEEe-cCch--hHHHHHhh
Q 004177 20 DALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVV-GGVH--FSLISKVQ 96 (770)
Q Consensus 20 ~~l~~~L~~Lk~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~~~l~~l~DlkIfVd-~d~d--~rl~RRi~ 96 (770)
+....+|.++..+.. .+|.|||..+.+..-..+...+..+|||+|++++.+.+.+.+| +|++ +|.+ +|+.|++.
T Consensus 60 ~~v~hhl~di~~~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~ 136 (340)
T 3d3q_A 60 EGIPHYMIDILPPDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLK 136 (340)
T ss_dssp TTCCEESSSCBCTTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHH
Confidence 333345556666665 7889999877664321222356678889999966688888776 7888 8888 78899999
Q ss_pred hccccCC--CHHHHHHHHHHhhhcccccc
Q 004177 97 YDIGDSC--SLDSLIDSIFPLFRKHIEPD 123 (770)
Q Consensus 97 RD~~er~--s~e~v~~~v~p~~~~yI~P~ 123 (770)
| +.++. .+.+.+..+.|.+..+|.|.
T Consensus 137 r-~~~~G~~~l~~~L~~vdP~~a~~I~p~ 164 (340)
T 3d3q_A 137 E-LEHLNNNKLHEYLASFDKESAKDIHPN 164 (340)
T ss_dssp T-TSSSCHHHHHHHHHHHCHHHHHHSCTT
T ss_pred H-HHhcCHHHHHHHHHhhCcHHHhhcCcc
Confidence 9 77762 22333444679999999986
No 196
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.24 E-value=0.0035 Score=71.54 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=37.8
Q ss_pred ecCCCCcccchhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 396 VPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 396 ~~~~~~~~~~e~~~~~~~~i~~l~~-~~~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
...|+|+..-+. .+.+.+... ......+|-++|.+||||||+++.|++.|+.
T Consensus 369 ~~~P~~f~rpeV----~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEV----VKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHH----HHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhh----HHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 456788887765 222223221 2235688999999999999999999999985
No 197
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.24 E-value=0.0023 Score=62.57 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.+.+|+|+|++||||||++..|...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 36689999999999999999999876
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.22 E-value=0.0022 Score=66.83 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+.-+++|+|||||||||+++.|...+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3456899999999999999999998764
No 199
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.21 E-value=0.0021 Score=64.09 Aligned_cols=27 Identities=44% Similarity=0.552 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--+++|.||||||||||++.|+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999998553
No 200
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.002 Score=63.89 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+++|.||||||||||++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999987
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.20 E-value=0.0021 Score=64.96 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.-+++|.||||||||||++.|+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 202
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0019 Score=63.10 Aligned_cols=25 Identities=44% Similarity=0.624 Sum_probs=22.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+|+|+|+||||||||++.|...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999999874
No 203
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.08 E-value=0.0016 Score=69.15 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 458999999999999999999987753
No 204
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.07 E-value=0.0029 Score=66.27 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=24.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEV 453 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~v 453 (770)
=+++.||+|||||||+++|+..+++..
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~ 72 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNF 72 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCE
Confidence 389999999999999999999887643
No 205
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.06 E-value=0.0033 Score=68.72 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
++.+|+|.|||||||||+++.|+..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999999873
No 206
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.02 E-value=0.0052 Score=65.65 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.-++.-+++|.||||||||||++.|+..+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 344567899999999999999999999874
No 207
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.00 E-value=0.0034 Score=64.82 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=29.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccce
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 459 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddf 459 (770)
.+|||+|+.||||||+++.|...+|+.+++..+-
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~ 35 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP 35 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence 6899999999999999999999888777665443
No 208
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.98 E-value=0.0069 Score=66.55 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=28.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
.-..+.+|+|.||+|||||||++.|+..++..+++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 44567799999999999999999999988654443
No 209
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.98 E-value=0.0059 Score=65.53 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=25.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
..+-.+++.||+|||||||++.|++.+++.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344668899999999999999999998753
No 210
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.0049 Score=67.19 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
-+|+|+||+||||||+++.|...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 3899999999999999999998774
No 211
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.95 E-value=0.0025 Score=70.42 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=26.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
--+++|.||||||||||++.|+..+. . ++..++.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~-~--~G~I~i~G 81 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGEIQIDG 81 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE-E--EEEEEESS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC-C--CeEEEECC
Confidence 35899999999999999999998664 2 44444443
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.90 E-value=0.008 Score=61.53 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=25.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
+.-|.|.||+|+||||++++|+..++.+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 445779999999999999999999876543
No 213
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.89 E-value=0.0049 Score=69.84 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=28.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
-++||.||||||||||++.|+..+.+. ++..++.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g 64 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRN 64 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECC
Confidence 699999999999999999999988654 44444443
No 214
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.88 E-value=0.0044 Score=66.17 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 357899999999999999999999887
No 215
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.85 E-value=0.0041 Score=67.68 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=25.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
...++|.||||||||||++.|+..+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999998765
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.84 E-value=0.0047 Score=70.09 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.+|+|.|+|||||||++++|+..+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3578999999999999999999999873
No 217
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.83 E-value=0.0043 Score=65.47 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=29.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
...|..+.+.||+|+|||+++++|++.++..++.+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34678888999999999999999999998665543
No 218
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.81 E-value=0.0087 Score=56.38 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCcEEEEEecccch--HHhhhcCC---eEEEEecCchhHHHHHhhhccccC-CCHHHHHHHHHHhhhccccccCCcccE
Q 004177 56 ASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDLHHAQI 129 (770)
Q Consensus 56 ~~~~VVIVEGi~~l~--~~l~~l~D---lkIfVd~d~d~rl~RRi~RD~~er-~s~e~v~~~v~p~~~~yI~P~k~~ADi 129 (770)
...+.||++|..... ..++..++ +.||+++|.++++.|...|+...+ .+.+++.+++......-+.++...||+
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~ 155 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADY 155 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCE
Confidence 456789999983322 44555554 899999999999999999976554 677888777632222224455678999
Q ss_pred EEeCCC
Q 004177 130 RINNRF 135 (770)
Q Consensus 130 VI~~~~ 135 (770)
+|+|+.
T Consensus 156 vId~~~ 161 (179)
T 3lw7_A 156 IITNDS 161 (179)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 998764
No 219
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.81 E-value=0.0047 Score=60.49 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+++|+|++|||||||++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5688999999999999999999875
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.79 E-value=0.011 Score=58.18 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 417 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 417 ~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
........+..+.|.||+|+||||+++.+++.++
T Consensus 37 ~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 37 NGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3333344455778999999999999999998775
No 221
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.01 Score=62.59 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
..+..|.|.||+|+||||++++|+..++...+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 456678899999999999999999998866544
No 222
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.78 E-value=0.0042 Score=62.37 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=31.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
....|.|+||+|||||||+..|++... .+++.|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 356788999999999999999999766 8888887644
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.77 E-value=0.0088 Score=63.32 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 411 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 411 ~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
.++.++........|.++.+.||+|+||||+++++++.++..++
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 34455555555556677888999999999999999998875433
No 224
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.72 E-value=0.005 Score=59.46 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=23.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.+|+|+|||||||++++|...++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 7889999999999999999998864
No 225
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.012 Score=63.13 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=28.8
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 411 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 411 ~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+++.+....++..-|. +.+.||+|+||||+++.+++.+.+
T Consensus 33 ~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 33 VITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcC
Confidence 4444444444433343 778999999999999999998754
No 226
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.68 E-value=0.0019 Score=66.10 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=25.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
+++|.||||||||||+++|+..+.+. +++..+..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g 62 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRN 62 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC--TTTC----
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC--CCeEEECC
Confidence 45789999999999999999998765 55555543
No 227
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.67 E-value=0.0055 Score=62.67 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=23.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
-++|.||+||||||++++|+..++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38899999999999999999988644
No 228
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.62 E-value=0.0032 Score=72.57 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+..+|+|+|+|||||||+++.|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3568999999999999999999999885
No 229
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.57 E-value=0.0032 Score=65.03 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh-CCccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVV 454 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L-~~~vi 454 (770)
.++.+|.|.|+.||||||+++.|++.+ +..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 467899999999999999999999988 44444
No 230
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.57 E-value=0.011 Score=63.96 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=25.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.-.+..+|||.|++|||||||.+.|...+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34577899999999999999999999876
No 231
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.56 E-value=0.0065 Score=60.29 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+.-+++|.||+|||||||++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999654
No 232
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.007 Score=64.69 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=26.4
Q ss_pred HHHHHHHH-HcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 412 VQAIQALL-ENKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 412 ~~~i~~l~-~~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++.++... +....+. +.|.||+|+||||+++.|++.+
T Consensus 23 ~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 23 TNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 33444433 3333345 8899999999999999999954
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.52 E-value=0.012 Score=58.13 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=49.6
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
.+.+|+||..++...+...+|..|||++|.++++.|...|+ ..+.+++.+++... .-..|..+.||++|+|+.
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~q--~~~~~~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNSQ--VSQQERLKWADDVINNDA 177 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHHS--CCHHHHHHHCSEEEECCS
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc--CChHHHHHhCCEEEECCC
Confidence 44788999655543477889999999999999999999886 24667776665321 112333457999999864
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.49 E-value=0.0072 Score=67.59 Aligned_cols=36 Identities=39% Similarity=0.572 Sum_probs=29.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
+|.+|+++|++||||||++..|+..+. +.++++|.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 578999999999999999999998772 335566643
No 235
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.47 E-value=0.0063 Score=70.51 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|+..+.+.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 4589999999999999999999987543
No 236
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.46 E-value=0.0052 Score=58.40 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
....++|.||+|||||||++.++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999999773
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.46 E-value=0.017 Score=58.19 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=31.6
Q ss_pred HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 412 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 412 ~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
+..++...+..++...+.|.||+|+||||+|.+|+..++-.++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4455555554444456889999999999999999998864443
No 238
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.44 E-value=0.019 Score=55.87 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 414 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 414 ~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+.........+. +.|.||+|+||||+++.+++.+.
T Consensus 28 ~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 28 RLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHh
Confidence 3444444333332 77899999999999999998763
No 239
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.018 Score=54.63 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.+..+.|.||+|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999987
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.41 E-value=0.0076 Score=62.66 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=23.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCEV 453 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~v 453 (770)
|+|.||+|||||||+++|+..++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 88999999999999999999886443
No 241
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.40 E-value=0.0057 Score=70.88 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|+..+.+.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 3489999999999999999999987654
No 242
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.014 Score=60.36 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=26.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
..+.-+.|.||+|+||||++++++..++..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 34566778999999999999999999886543
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.35 E-value=0.0085 Score=66.75 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.-+|+|+||+||||||+++.|...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45689999999999999999999988643
No 244
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.32 E-value=0.018 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.+..+.|.||+|+||||+++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34455789999999999999999887
No 245
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.30 E-value=0.0073 Score=69.16 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddfy 460 (770)
..+.+|.++|.+||||||+++.|+..++ +.+++.|++-
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 4578899999999999999999999884 2356777743
No 246
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.30 E-value=0.0098 Score=65.13 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
...-+|+|+||+||||||+++.|...+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998764
No 247
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.29 E-value=0.0054 Score=66.89 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..+++|+||+|||||||++.|...+.+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 347889999999999999999997754
No 248
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.27 E-value=0.017 Score=62.69 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.2
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 414 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 414 ~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++.+....+++.+|+|+|++|+|||||+..|+..+
T Consensus 68 ~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 68 LLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444445678999999999999999999999876
No 249
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.26 E-value=0.018 Score=60.09 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
.+.-|.|.||+|+||||++++++..++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3567788999999999999999999876543
No 250
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.25 E-value=0.0049 Score=71.42 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|...+.+.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSCCS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCCCC
Confidence 3589999999999999999999877654
No 251
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.25 E-value=0.011 Score=63.58 Aligned_cols=27 Identities=37% Similarity=0.362 Sum_probs=24.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999877
No 252
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.23 E-value=0.022 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..|.|.||+|+||||++++++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999876
No 253
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.21 E-value=0.0058 Score=71.08 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=27.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
--++||.||||||||||++.|...+.+. ++...+.+
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~~g 416 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILVDG 416 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCCS--EEEEEETT
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCCC--CeEEEECC
Confidence 4589999999999999999999987654 44444433
No 254
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.21 E-value=0.0072 Score=58.97 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..+.|+|.|++|||||||++.+....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345889999999999999999999853
No 255
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.19 E-value=0.01 Score=66.43 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=29.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccce
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 459 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~-----~~vis~Ddf 459 (770)
+|.+|.++|++||||||++..|+..+. +.++++|.|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 589999999999999999999998762 445666654
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.16 E-value=0.0094 Score=63.24 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++.+|+++|++||||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 257
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.15 E-value=0.0057 Score=71.09 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.-++||.||||||||||++.|+..+.+.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 3489999999999999999999977643
No 258
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.13 E-value=0.0054 Score=66.08 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+++|+||+|||||||++.|+..+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 47889999999999999999998754
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.12 E-value=0.013 Score=59.63 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
.+.-|.|.||+|+||||+++.++..++..++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4455778999999999999999999876543
No 260
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.09 E-value=0.02 Score=56.86 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+..+.|.||+|+||||+++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 455677899999999999999998764
No 261
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.09 E-value=0.021 Score=60.76 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=26.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
..+..|.|.||+|+||||+++.++..++..++
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 34445678999999999999999999876543
No 262
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.0072 Score=68.16 Aligned_cols=26 Identities=35% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.--+++|.||||||||||++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44578899999999999999999976
No 263
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.0071 Score=69.56 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+--++||.||||||||||++.|+..+.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p 51 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIP 51 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4469999999999999999999997753
No 264
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.07 E-value=0.0072 Score=70.15 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|...+.+.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 4589999999999999999999977654
No 265
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.06 E-value=0.009 Score=66.42 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.+|||.||||||||||.+.|.+.+.
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3677999999999999999999998653
No 266
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.02 E-value=0.0087 Score=68.81 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 458999999999999999999997743
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.01 E-value=0.014 Score=56.91 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=51.4
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
.++||+||.+++...+.+.+|+.|||++|.++++.|...|+. .+.+++...+...+.. .+....||++|+++.
T Consensus 106 ~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~---~~~~~~~~~i~~~~~~--~~~~~~ad~vId~~~ 178 (203)
T 1uf9_A 106 APLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSG---LSREEVLARERAQMPE--EEKRKRATWVLENTG 178 (203)
T ss_dssp CSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTC---CTTHHHHHHHTTSCCH--HHHHHHCSEEECCSS
T ss_pred CCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHHHHHHHHCCCh--hHHHHhCCEEEECCC
Confidence 579999998666555667789999999999999999988752 3445555555322221 122467999998763
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.98 E-value=0.011 Score=62.00 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=23.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.+.-+++|+|++|||||||++.|+..+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 269
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.95 E-value=0.016 Score=59.03 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=27.4
Q ss_pred cCCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccccccCcccEEEcCC
Q 004177 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 597 (770)
Q Consensus 536 ~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~p~~~~ADivI~n~ 597 (770)
..|+.||++++.++.+.|. .||..+. +...|...++..|..+..... ...++|+++
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~----~~~e~~~rv~~~y~~la~~~~-~~~~vIDa~ 200 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEF----ADMEFYYRVRDGFYDIAKKNP-HRCHVITDK 200 (223)
T ss_dssp CCSEEEEEECC---------------------CHHHHHHHHHHHHHHHHHCT-TTEEEEESS
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCcccc----chHHHHHHHHHHHHHHHHHCC-CCEEEEcCC
Confidence 5799999999999998887 4443221 114566777777777654331 256777764
No 270
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.93 E-value=0.032 Score=57.59 Aligned_cols=33 Identities=36% Similarity=0.421 Sum_probs=27.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
...+.-+.|.||+|+|||++|++++..++.+++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345677888999999999999999999886644
No 271
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.93 E-value=0.016 Score=56.96 Aligned_cols=70 Identities=13% Similarity=0.104 Sum_probs=51.7
Q ss_pred cEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCC
Q 004177 59 GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 134 (770)
Q Consensus 59 ~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~ 134 (770)
++||+||.+++...+..++|..|||++|.++++.|...| ..+.+++.+++...+. ..++...||++|+++
T Consensus 106 ~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~~~--~~~~~~~ad~vId~~ 175 (204)
T 2if2_A 106 TLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQMP--IEEKVKYADYVIDNS 175 (204)
T ss_dssp CCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTSCC--HHHHGGGCSEECCCS
T ss_pred CEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhCCC--hhHHHhcCCEEEECC
Confidence 689999987766666678999999999999999999887 2455666666533221 123456799999876
No 272
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.91 E-value=0.013 Score=57.87 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.-+++|.||+|||||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999998
No 273
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.90 E-value=0.0086 Score=68.83 Aligned_cols=28 Identities=36% Similarity=0.622 Sum_probs=24.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|+..+.+.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3589999999999999999999977543
No 274
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.89 E-value=0.01 Score=68.29 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999997754
No 275
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.87 E-value=0.024 Score=58.12 Aligned_cols=31 Identities=39% Similarity=0.449 Sum_probs=25.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+.-|.|.||+|+||||++++++..++.+++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3346689999999999999999988765443
No 276
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.85 E-value=0.0085 Score=68.46 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..+|+|+||+||||||++++|...+.+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 345899999999999999999987753
No 277
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.82 E-value=0.027 Score=59.70 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=25.7
Q ss_pred HHHHHHHcCC-CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 414 AIQALLENKG-LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 414 ~i~~l~~~~~-~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++....+... .+..+.|.||+|+||||+++.++..+
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3444444332 23445679999999999999999987
No 278
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.80 E-value=0.018 Score=58.12 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+..+|.|.|++||||||+++.|++.++
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999885
No 279
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.80 E-value=0.014 Score=58.54 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+.-+++|.||+|||||||+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999984
No 280
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.79 E-value=0.032 Score=62.33 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 413 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 413 ~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++....+....+.-+.|.||+|+|||||++.++..+
T Consensus 118 ~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 118 HAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344444443324456679999999999999999877
No 281
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.79 E-value=0.012 Score=68.63 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
--++||.||||||||||++.|+..+.+
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~~p 408 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVEEP 408 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 358999999999999999999997754
No 282
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.77 E-value=0.014 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..+.|+|.|++|||||||.++|...
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3578999999999999999999974
No 283
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.68 E-value=0.022 Score=59.19 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
+.-+.+.||+|+|||++++.++..++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 344557999999999999999999976543
No 284
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.66 E-value=0.051 Score=53.11 Aligned_cols=70 Identities=1% Similarity=-0.022 Sum_probs=49.2
Q ss_pred cEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHH---HhhhccccccCCccc-EEEeCC
Q 004177 59 GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF---PLFRKHIEPDLHHAQ-IRINNR 134 (770)
Q Consensus 59 ~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~---p~~~~yI~P~k~~AD-iVI~~~ 134 (770)
+.+|+||..++ ..+.+.+|++|||++|.++++.|+..|+. .+.+++.+.+. +.+..+- ...|| ++|+++
T Consensus 119 ~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~---~~~~~~~~~~~~R~~~~~~~~---~~~ad~~~Id~~ 191 (208)
T 3ake_A 119 PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP---QAYEEVLRDLLRRDERDKAQS---APAPDALVLDTG 191 (208)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS---SCHHHHHHHHHHHHHTC--CC---CCCTTCEEEETT
T ss_pred CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc---cCHHHHHHHHHHHHHHHhhcc---cCCCCEEEEECC
Confidence 57899999876 33445689999999999999999988854 34566665542 2222211 45688 999886
Q ss_pred C
Q 004177 135 F 135 (770)
Q Consensus 135 ~ 135 (770)
.
T Consensus 192 ~ 192 (208)
T 3ake_A 192 G 192 (208)
T ss_dssp T
T ss_pred C
Confidence 4
No 285
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.66 E-value=0.012 Score=62.97 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..+++|+|++|||||||.+.|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35688999999999999999999854
No 286
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.61 E-value=0.025 Score=61.28 Aligned_cols=26 Identities=31% Similarity=0.731 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...+|+|+|++|||||||.++|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999865
No 287
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.58 E-value=0.015 Score=59.45 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=22.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+..+|.|.|++||||||+++.|++.++.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678889999999999999999998853
No 288
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.02 Score=63.97 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
-..|.=|.+.||+|+|||++|+++|..+++.++..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 34677788999999999999999999999775543
No 289
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.55 E-value=0.018 Score=57.83 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---Cccccccceec
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFK 461 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~---~~vis~Ddfy~ 461 (770)
.++++|+|+|-+||||+|+++.+.+.++ +.++++-|-.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 4678999999999999999999999774 66778777554
No 290
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.52 E-value=0.027 Score=58.89 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=22.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.+.||+|+||||+++.|+..+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4788999999999999999999873
No 291
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.50 E-value=0.037 Score=59.89 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
.+.-|.|.||+|+||||++++++..++..++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4567788999999999999999999886543
No 292
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.48 E-value=0.012 Score=68.54 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.--++||.||||||||||++.|+..+.+
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll~p 143 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQLIP 143 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 3468999999999999999999997753
No 293
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.48 E-value=0.016 Score=65.25 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
..+.+|.++|.+||||||+++.|+..++...++.|.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45788999999999999999999998865444555544
No 294
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.47 E-value=0.04 Score=58.56 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=26.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+.-|.+.||+|+|||++|++++..++..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 4567789999999999999999998866443
No 295
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.46 E-value=0.018 Score=62.48 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--++||.||||||||||.+.|+..+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 45589999999999999999999987643
No 296
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.44 E-value=0.042 Score=58.75 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=26.9
Q ss_pred HHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 418 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 418 l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.......+..+.|.||+|+||||+++.+++.+++.
T Consensus 31 ~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 31 GLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred HHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33334445567789999999999999999988653
No 297
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.36 E-value=0.031 Score=60.35 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=25.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+.-|.+.||+|+|||++|+.|+..++.+++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4456779999999999999999998866443
No 298
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.34 E-value=0.019 Score=59.63 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.-+++|.||+|||||||+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4588899999999999999999754
No 299
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.024 Score=63.35 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=29.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
...|.=|.+.||+|+|||++|+++|..+++++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34677888999999999999999999999775443
No 300
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.30 E-value=0.013 Score=57.92 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
|.|+|++||||||||..|+.. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 678999999999999999875 533
No 301
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.025 Score=63.31 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=28.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
-..|.=|.+.||+|+|||++|+++|..+++.++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3467788899999999999999999999977543
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.28 E-value=0.02 Score=60.75 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
..++++.||||||||||.+.|. .+.+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 4588999999999999999999 6654
No 303
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.26 E-value=0.051 Score=56.83 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 413 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 413 ~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.+.........+. +.+.||+|+||||+++.++..+.
T Consensus 35 ~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 35 KRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 33444444333344 77899999999999999999874
No 304
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=63.51 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCEE--EeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVI--VGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~i--IGI~GpsGSGKTTla~~La~~ 448 (770)
...+ +||.|+||||||||++.|.+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4445 999999999999999999875
No 305
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.21 E-value=0.026 Score=57.16 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+..+|.+.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4568889999999999999999999975
No 306
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.20 E-value=0.029 Score=53.10 Aligned_cols=25 Identities=36% Similarity=0.294 Sum_probs=21.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+-+.+|.||+||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4477899999999999999998766
No 307
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.038 Score=62.97 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=26.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+..+.|.||+|+||||+++.+++.++..++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4577789999999999999999999866543
No 308
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.16 E-value=0.017 Score=64.61 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccee
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 460 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L-----~~~vis~Ddfy 460 (770)
+|.+|+|+|++||||||++..|+..+ .+.++++|-|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 46789999999999999999999876 25566777653
No 309
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.15 E-value=0.022 Score=63.71 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.+--++||.||||||||||++.|+....+.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345689999999999999999999987643
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.12 E-value=0.017 Score=61.14 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.+++|.||||||||||.+.|+....+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccccc
Confidence 488999999999999999999866543
No 311
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.10 E-value=0.029 Score=59.38 Aligned_cols=26 Identities=35% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
++.+|+|+|++||||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999877
No 312
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.025 Score=62.55 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=28.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
..|.=|.+.||+|+|||++|+++|..+++++++
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 456777789999999999999999999977554
No 313
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.09 E-value=0.029 Score=59.55 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.2
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.+.||+|+||||+++.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999999874
No 314
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.08 E-value=0.04 Score=59.41 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=25.7
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...+..+|+|+|++||||||+++.|+..+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999999875
No 315
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.07 E-value=0.016 Score=70.88 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=28.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccceec
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 461 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~ 461 (770)
.-++||.||||||||||++.|++.+.+. ++..++.
T Consensus 699 GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~~~ 733 (986)
T 2iw3_A 699 SSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVYTH 733 (986)
T ss_dssp TCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEc
Confidence 4589999999999999999999987654 4544443
No 316
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.06 E-value=0.059 Score=57.51 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCcc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEV 453 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L-~~~v 453 (770)
.+.-|.+.||+|+|||+++++++..+ +..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 34677789999999999999999988 5443
No 317
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.05 E-value=0.043 Score=63.78 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 410 LSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 410 ~~~~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
.+++.+...... + ..++|.||+||||||+++.|+..++.
T Consensus 48 ~~l~~l~~~i~~-g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 48 HAVEVIKTAANQ-K--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHHHHHHHT-T--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred hhHhhccccccC-C--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344444444432 2 36678999999999999999998854
No 318
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.03 E-value=0.029 Score=62.61 Aligned_cols=27 Identities=33% Similarity=0.215 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
++.+|+++|++||||||++..|+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999873
No 319
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.02 E-value=0.09 Score=53.12 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccC---CCHHHHHHHH----HHhhhccccccCCccc-
Q 004177 57 SSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CSLDSLIDSI----FPLFRKHIEPDLHHAQ- 128 (770)
Q Consensus 57 ~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er---~s~e~v~~~v----~p~~~~yI~P~k~~AD- 128 (770)
..+.+|+||.....+ +....|+.|||+++.++++.|++.|.. .| .+.+++.+.+ .+.+.+++.|....||
T Consensus 134 ~~~~~v~~g~~~~~~-~l~~~d~vi~L~a~~e~~~~R~~~~~~-~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~ 211 (236)
T 1q3t_A 134 QQGGIVMDGRDIGTV-VLPQAELKIFLVASVDERAERRYKENI-AKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDA 211 (236)
T ss_dssp TTSCEEEECSSCSSS-SGGGCSEEEEEECCHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTC
T ss_pred ccCCEEEECCcchhh-hccCCCEEEEEECCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCE
Confidence 345678899865322 234569999999999999999865532 23 2566665543 5666677888877777
Q ss_pred EEEeCCC
Q 004177 129 IRINNRF 135 (770)
Q Consensus 129 iVI~~~~ 135 (770)
++|+++.
T Consensus 212 ~vId~~~ 218 (236)
T 1q3t_A 212 VYLDTTG 218 (236)
T ss_dssp EEEECSS
T ss_pred EEEcCCC
Confidence 9998763
No 320
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.02 E-value=0.016 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.....|+|.|++|||||||.+.|...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998754
No 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.01 E-value=0.068 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+.|.||+|+||||+++.++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 788999999999999999999874
No 322
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.95 E-value=0.045 Score=57.52 Aligned_cols=29 Identities=38% Similarity=0.491 Sum_probs=24.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.+..|.|.||+|+||||+++.++..++..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34456679999999999999999988754
No 323
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.94 E-value=0.06 Score=56.17 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 413 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 413 ~~i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.+.....+...+. +.+.||+|+||||+++.+++.+.
T Consensus 31 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 31 DRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 33444444443344 77899999999999999999864
No 324
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.93 E-value=0.052 Score=60.79 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+.-+.+.||+|+|||++|++++..++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 445677899999999999999999997
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.91 E-value=0.029 Score=59.89 Aligned_cols=28 Identities=25% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...+..+.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678899999999999999999877
No 326
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.86 E-value=0.03 Score=52.87 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...|+|.|++|+|||||.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999975
No 327
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.83 E-value=0.034 Score=63.94 Aligned_cols=29 Identities=41% Similarity=0.629 Sum_probs=25.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+...+++.||+||||||+++.|+..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45688899999999999999999998755
No 328
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.81 E-value=0.041 Score=61.69 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=27.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 457 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~D 457 (770)
+.-|.+.||+|+||||++++|+..+++..++.|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 445778999999999999999999988766554
No 329
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.77 E-value=0.032 Score=56.33 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=32.5
Q ss_pred cCCeEEEEEcChhHHHHHHHHhcccccCcCcc--hhhHHhhccchhhhccc
Q 004177 536 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIE 584 (770)
Q Consensus 536 ~lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~--~~q~~~~v~p~~~~~I~ 584 (770)
..|+.+|++++.++.+.|...|.... ..+ ...|...++..|..+.+
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~d---r~E~~~~~f~~rv~~~y~~la~ 179 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELD---RIEQESFDFFNRTRARYLELAA 179 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCC---TTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcc---chhhhHHHHHHHHHHHHHHHHH
Confidence 46999999999999999988874211 122 23567777777877653
No 330
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.034 Score=62.50 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=28.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
..|.=|.+.||+|+|||++|+++|..+++.+++
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 467888899999999999999999999977544
No 331
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=93.77 E-value=0.11 Score=53.27 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred HHhhhhhhhhheeeeeeEEec--------C-eEEEEEeccccCCCceEEEe-----c----CCHHHHHHhhhhccccccc
Q 004177 700 LLNLGYQAVAYIEASAFIYQD--------G-KILIEVDHLQDAPSPYLQIK-----G----VDKEAVAAAGSTLKLDGSY 761 (770)
Q Consensus 700 l~~lgy~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~-----g----~~~~~v~~~~~~~~~~~~~ 761 (770)
|..+|++.++.+.-....|.- + .+.|.+|..+ ++.+|.-|- | ..+..+.++|.+|||+...
T Consensus 129 L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~ 207 (234)
T 3bhd_A 129 LGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQE 207 (234)
T ss_dssp HHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTC
T ss_pred HhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccc
Confidence 446999999887777655544 6 8999999999 998898885 2 3456788999999999999
Q ss_pred ccchhhc
Q 004177 762 TTKVMSL 768 (770)
Q Consensus 762 ~~~~~~~ 768 (770)
.+++|++
T Consensus 208 ~~~~k~~ 214 (234)
T 3bhd_A 208 TAPAKLI 214 (234)
T ss_dssp CCCCHHH
T ss_pred cchHHHH
Confidence 9999876
No 332
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.74 E-value=0.11 Score=53.33 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=56.1
Q ss_pred cEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccC--CCHHHHHHHH----HHhhhccccccCCccc-EEE
Q 004177 59 GVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRI 131 (770)
Q Consensus 59 ~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er--~s~e~v~~~v----~p~~~~yI~P~k~~AD-iVI 131 (770)
+-+|+||--+-.--+ +-.+++|||+++.+.|..||..+-...+ .+.+++...+ .....+|+.|.+..+| ++|
T Consensus 129 ~~~V~~GRd~gt~V~-pda~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~I 207 (233)
T 3r20_A 129 GRVVVEGRDIGTVVL-PDADVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVV 207 (233)
T ss_dssp SCEEEEESSCCCCCC-TTCSEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEE
T ss_pred CcEEEecccceeEEc-CCCCEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEE
Confidence 557778863322111 1157999999999999999987654444 6788887765 4556788999887777 999
Q ss_pred eCCCCc
Q 004177 132 NNRFVS 137 (770)
Q Consensus 132 ~~~~~~ 137 (770)
+++..+
T Consensus 208 DTs~l~ 213 (233)
T 3r20_A 208 DTSDMD 213 (233)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 987654
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.70 E-value=0.035 Score=63.26 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L---~--~~vis~Ddf 459 (770)
.++.+|+|+|++||||||++..|+..+ | +.+++.|.|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 357899999999999999999999766 2 445566543
No 334
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.68 E-value=0.051 Score=56.62 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 004177 428 VGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L 449 (770)
+.+.||+|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 335
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.62 E-value=0.031 Score=60.54 Aligned_cols=27 Identities=44% Similarity=0.555 Sum_probs=24.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...-+++|.||+|||||||+..++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 336
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.60 E-value=0.035 Score=63.22 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
|.=|.|.||+|+|||||+++|+..++...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 334889999999999999999998875543
No 337
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.60 E-value=0.033 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+.-+++|.||+|||||||+..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34588899999999999988887543
No 338
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.60 E-value=0.039 Score=52.74 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=21.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+++.|+|.|++|+|||||.++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999986
No 339
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.57 E-value=0.032 Score=60.82 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+++|.||||||||||++.|...+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4889999999999999999997554
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.52 E-value=0.062 Score=60.25 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=24.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEV 453 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~v 453 (770)
..-+.|.||+|+||||+++.|++.++...
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f 78 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADV 78 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34566899999999999999999887653
No 341
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.51 E-value=0.037 Score=60.02 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
.-|.+.||+|+||||+|+.|+..++.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 345679999999999999999999765443
No 342
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.49 E-value=0.063 Score=56.04 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.-+.|.||+|+|||++++.+++.++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3445677899999999999999998873
No 343
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.47 E-value=0.031 Score=59.23 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=23.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+.+|+++|++||||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7799999999999999999999877
No 344
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.42 E-value=0.044 Score=61.07 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
..|.=|.+.||+|+|||++|+++|..++..+++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 4677888999999999999999999999775543
No 345
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.39 E-value=0.046 Score=53.67 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=28.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccceecc
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 462 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy~~ 462 (770)
.-|.|.|+||+||||+|..|.. -|..+++-|.....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i~ 52 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQLVCDDVIDLK 52 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEEE
Confidence 4577899999999999999998 47776666655443
No 346
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.38 E-value=0.02 Score=62.77 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=23.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+++|+|+||||||||.++|...++..
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~~~~ 87 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLLGGR 87 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHTTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 88999999999999999999988753
No 347
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.38 E-value=0.059 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 004177 428 VGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L 449 (770)
|.|.|++|+|||++|+.|+...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4469999999999999999864
No 348
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.38 E-value=0.1 Score=56.04 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=24.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
...+..+.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 42 NEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456688899999999999999999876
No 349
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.37 E-value=0.04 Score=59.65 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+.-|.|.||+|+|||++|++++..++..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3446679999999999999999999866443
No 350
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.31 E-value=0.045 Score=50.84 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+-|+|.|++|||||||++.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 467889999999999999999986
No 351
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.30 E-value=0.087 Score=57.51 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
+.-|.|.||+|+|||+++++++..++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 4567789999999999999999998866443
No 352
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.29 E-value=0.045 Score=54.38 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=28.4
Q ss_pred CCeEEEEEcChhHHHHHHHHhcccccCcCcchhhHHhhccchhhhccc
Q 004177 537 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIE 584 (770)
Q Consensus 537 lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~~~q~~~~v~p~~~~~I~ 584 (770)
-|+.++++.+++..+.|+-.+|. .+...|...++..|.+...
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~dr------~e~~ef~~rv~~~y~~la~ 163 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGELNR------FEKREFLERVREGYLVLAR 163 (197)
T ss_dssp CSEEEEEECCHHHHHHHC---CT------TCCHHHHHHHHHHHHHHHH
T ss_pred CCceeecCcChHHHHHhCcCcCc------cccHHHHHHHHHHHHHHHH
Confidence 58999999999999988655542 1223567777777777643
No 353
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.28 E-value=0.052 Score=54.33 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=29.5
Q ss_pred CCeEEEEEcChhHHHHHHHHhcccccCcCcc--hhhHHhhccchhhhccc
Q 004177 537 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIE 584 (770)
Q Consensus 537 lD~~I~Vd~~~d~rL~Rri~RD~~~rG~~l~--~~q~~~~v~p~~~~~I~ 584 (770)
-|+.+|++.|+++.+.|...|.... + ..+ ...|...++..|.++.+
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~~-d-r~e~~~~~f~~~v~~~Y~~l~~ 172 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRDQ-N-RLDQEDLKFHEKVIEGYQEIIH 172 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCcc-c-chhccCHHHHHHHHHHHHHHHH
Confidence 4899999999999998876653211 1 122 23566777778877754
No 354
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.21 E-value=0.05 Score=53.79 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.+..+|+|+|.+|||||||+..|...+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999875
No 355
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.13 E-value=0.046 Score=59.56 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
+.+|+|||||||||+..+|.-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67799999999999999998765
No 356
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.13 E-value=0.04 Score=62.90 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCEEEeeeCCCCccHHHHHHH--HHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHK--MANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~--La~~L 449 (770)
+.-+++|.||||||||||++. ++..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 55655
No 357
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.13 E-value=0.051 Score=61.48 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=26.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
|.-|.|.||+|+||||++++++..++.++++
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 4457799999999999999999998866543
No 358
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.054 Score=52.05 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.+.|+|.|++|||||||+++|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999874
No 359
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.09 E-value=0.05 Score=51.27 Aligned_cols=27 Identities=48% Similarity=0.431 Sum_probs=22.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|++|||||||++.+...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345688999999999999999999863
No 360
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.08 E-value=0.026 Score=65.75 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=21.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L 449 (770)
.|||.||||||||||++.|++.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999865
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.07 E-value=0.058 Score=51.57 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.++-|+|.|++|||||||+++|...
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 346788999999999999999999874
No 362
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.01 E-value=0.043 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+..+.|.||+|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456677889999999999999999877
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.01 E-value=0.13 Score=52.75 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=48.8
Q ss_pred CCcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccC--CCHHHHHHHH----HHhhhccccccCCccc-E
Q 004177 57 SSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLHHAQ-I 129 (770)
Q Consensus 57 ~~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er--~s~e~v~~~v----~p~~~~yI~P~k~~AD-i 129 (770)
..+-+++||-.+-.- +.+-.|++|||+++.++|..|+.......+ .+.+++.+.. .....+.+.|.+..|| +
T Consensus 144 ~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 144 EAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp CSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred hCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 344578888644321 112368999999999999999876433323 4677777654 4556677899988888 9
Q ss_pred EEeCCCC
Q 004177 130 RINNRFV 136 (770)
Q Consensus 130 VI~~~~~ 136 (770)
+|+++..
T Consensus 223 ~Idts~~ 229 (252)
T 4e22_A 223 VLDSTSM 229 (252)
T ss_dssp EEECSSS
T ss_pred EEECcCC
Confidence 9988754
No 364
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.99 E-value=0.047 Score=65.71 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=27.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
..+..|.|.||+||||||++++|+..++...+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 356678899999999999999999988765443
No 365
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=92.98 E-value=0.047 Score=65.25 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=21.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L 449 (770)
-+++|+|||||||||+.+.++...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 488999999999999999999754
No 366
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.98 E-value=0.055 Score=60.00 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=24.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
.+-+++|.|||||||||+..+|...++..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 35688899999999999999999887643
No 367
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.97 E-value=0.083 Score=56.58 Aligned_cols=27 Identities=41% Similarity=0.520 Sum_probs=23.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+..+.|.||+|+|||++++.++..++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357778999999999999999999874
No 368
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.96 E-value=0.055 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
++-|+|.|++|||||||.+.+..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46789999999999999999886
No 369
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.96 E-value=0.037 Score=69.93 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=24.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+--++||.||||||||||++.|...+.+.
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34589999999999999999999877543
No 370
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.88 E-value=0.11 Score=58.07 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCcc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEV 453 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L-~~~v 453 (770)
.+.-|.|.||+|+|||+++++++..+ +..+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~ 196 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 196 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCE
Confidence 34667789999999999999999988 5443
No 371
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.88 E-value=0.044 Score=66.99 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=21.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.-++||.||||||||||++.|++
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999995
No 372
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.85 E-value=0.064 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.231 Sum_probs=22.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+-+..|.||+||||||+..+|.-.++
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45778999999999999999987774
No 373
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.85 E-value=0.021 Score=72.32 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--.|||+|+||||||||++.|.+.+.+.
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 4589999999999999999999877543
No 374
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.81 E-value=0.075 Score=49.57 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+++-|+|.|++|||||||.+++..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4578899999999999999999965
No 375
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.81 E-value=0.039 Score=69.78 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--++||.||||||||||++.|...+.+.
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 4589999999999999999999877543
No 376
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.79 E-value=0.027 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+++|.|+||||||||.+.|...+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 4889999999999999999987554
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.74 E-value=0.055 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
++-|++.|++|||||||++.+...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999999863
No 378
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.73 E-value=0.066 Score=50.42 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..++..|+|.|++|||||||.++|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34677889999999999999999975
No 379
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.71 E-value=0.058 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....|+|.|++|+|||||.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999863
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.71 E-value=0.069 Score=49.38 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+++-|++.|++|||||||++.|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 357789999999999999999986
No 381
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.64 E-value=0.049 Score=57.73 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+-.+-|+|.|++|||||||.+.|...
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 44678899999999999999998753
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.61 E-value=0.058 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+..+-|+|.|++|||||||.+.+...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999863
No 383
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.58 E-value=0.05 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~ 447 (770)
+-|+|.|++|+|||||++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999986
No 384
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.56 E-value=0.097 Score=59.35 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 454 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vi 454 (770)
..+.-|.|.||+|+|||+++++++..++..++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 44566778999999999999999998876544
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.50 E-value=0.075 Score=52.68 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=24.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++..|+|+|.+|||||||+..+...+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999999865
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.50 E-value=0.15 Score=50.58 Aligned_cols=73 Identities=16% Similarity=0.020 Sum_probs=50.0
Q ss_pred CcEEEEEecccchHHhhhcCCeEEEEecCchhHHHHHhhhccccCCCHHHHHHHHHHhhhccccccCCcccEEEeCCC
Q 004177 58 SGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 135 (770)
Q Consensus 58 ~~VVIVEGi~~l~~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~er~s~e~v~~~v~p~~~~yI~P~k~~ADiVI~~~~ 135 (770)
...+|+||.+++...+...+|+.|||++|.++++.|...|+ +.+.+++...+..... ..+....||++|+++.
T Consensus 107 ~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~~~~~~~~~~~~~--~~~~~~~ad~vId~~~ 179 (218)
T 1vht_A 107 SPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD---DVTREHVEQILAAQAT--REARLAVADDVIDNNG 179 (218)
T ss_dssp SSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH---TCCHHHHHHHHHHSCC--HHHHHHHCSEEEECSS
T ss_pred CCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhcCC--hHHHHHhCCEEEECCC
Confidence 34678888666553367789999999999999999988875 2345666555532111 1122356899998864
No 387
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.42 E-value=0.035 Score=65.32 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=18.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMA 446 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La 446 (770)
--+++|.||||||||||++.+.
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3489999999999999997653
No 388
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.41 E-value=0.072 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
++-|+|.|++|||||||.+++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46789999999999999999986
No 389
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.38 E-value=0.064 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
++-|+|.|++|||||||++.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 56789999999999999999986
No 390
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.37 E-value=0.072 Score=49.92 Aligned_cols=24 Identities=42% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.++-|+|.|++|+|||||.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 467899999999999999999874
No 391
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.37 E-value=0.064 Score=64.43 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..+++|+|||||||||+.+.++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 458899999999999999999975
No 392
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.33 E-value=0.07 Score=50.19 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.+-|+|.|.+|||||||.++|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45678999999999999999999874
No 393
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.30 E-value=0.079 Score=52.10 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=23.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
......|.|.|++|||||||+++|....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456788899999999999999998743
No 394
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.28 E-value=0.079 Score=49.89 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|++|||||||+++|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999985
No 395
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.26 E-value=0.087 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.-|+|.|++|||||||++++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999863
No 396
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.25 E-value=0.06 Score=59.90 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=23.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+-.+-|+|.|+||||||||++.|.+..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999998754
No 397
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.18 E-value=0.066 Score=51.49 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+..+-|+|.|++|+|||||+++|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 445688999999999999999999873
No 398
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.17 E-value=0.056 Score=68.56 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
--.++|+||+|||||||++.|.+.+.+.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~~~~ 471 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYYDVL 471 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSSCCS
T ss_pred CcEEEEEecCCCcHHHHHHHhccccccc
Confidence 4589999999999999999999877544
No 399
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.16 E-value=0.064 Score=49.92 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+.+-|+|.|++|||||||.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999763
No 400
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.16 E-value=0.088 Score=58.80 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=29.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccce
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 459 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L----~--~~vis~Ddf 459 (770)
.+|.+|.++|++||||||++..|+..+ | +.++++|-+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 357899999999999999999999766 2 345566643
No 401
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.16 E-value=0.086 Score=56.62 Aligned_cols=25 Identities=36% Similarity=0.294 Sum_probs=21.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+-+.+|.|||||||||+..+|.-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4577899999999999999986654
No 402
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.15 E-value=0.073 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.++-|+|.|++|+|||||++.|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4568899999999999999999986
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.11 E-value=0.071 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+++-|+|.|++|||||||++.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678899999999999999999863
No 404
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.11 E-value=0.064 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+-|+|.|++|||||||.+.+..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999999975
No 405
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.09 E-value=0.078 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+-|+|.|++|||||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46789999999999999999875
No 406
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.05 E-value=0.059 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.++-|+|.|++|+|||||.++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 467889999999999999999986
No 407
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.04 E-value=0.057 Score=63.51 Aligned_cols=18 Identities=56% Similarity=0.676 Sum_probs=16.4
Q ss_pred CEEEeeeCCCCccHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLA 442 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla 442 (770)
--++||.||||||||||+
T Consensus 44 Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 44 GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TSEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHh
Confidence 458999999999999996
No 408
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.04 E-value=0.13 Score=55.57 Aligned_cols=25 Identities=40% Similarity=0.430 Sum_probs=20.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+|||.||+|+||||+++.+++.+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3455559999999999999999876
No 409
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.03 E-value=0.011 Score=59.71 Aligned_cols=101 Identities=7% Similarity=0.079 Sum_probs=67.3
Q ss_pred CCCCccccccccccCcccCCeEEEcCCCcEEEEEecccch-HHhhhcCCeEEEEecCchhHHHHHhhhccc-cCCCHHHH
Q 004177 31 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-DSCSLDSL 108 (770)
Q Consensus 31 ~g~~i~~P~YD~~~~~r~~~~~~~~~~~~VVIVEGi~~l~-~~l~~l~DlkIfVd~d~d~rl~RRi~RD~~-er~s~e~v 108 (770)
.|+.+..+.|.|.+...... .+++..+.++++++.+. +......|+.||+|+|.++++.|...|+.. ++....++
T Consensus 103 ~~r~v~~dry~~s~~ayq~~---~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~ 179 (230)
T 2vp4_A 103 MERSIFSARYCFVENMRRNG---SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKY 179 (230)
T ss_dssp EESCHHHHHHTHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHH
T ss_pred ecCCccccHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHH
Confidence 35667777788876554322 24555677778887766 445567999999999999999998777533 22111256
Q ss_pred HHHHHHhhhcccccc--CCccc-EEEeCC
Q 004177 109 IDSIFPLFRKHIEPD--LHHAQ-IRINNR 134 (770)
Q Consensus 109 ~~~v~p~~~~yI~P~--k~~AD-iVI~~~ 134 (770)
.++++..|..++..+ +..++ ++|+++
T Consensus 180 ~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 180 LQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp HHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 777888888776433 34454 778764
No 410
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.00 E-value=0.073 Score=49.41 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
++-|+|.|++|||||||.+++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999976
No 411
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.99 E-value=0.07 Score=50.18 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+..+-|+|.|++|||||||+++|..
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhc
Confidence 34568899999999999999999864
No 412
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.98 E-value=0.075 Score=50.87 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+++-|++.|.+|||||||++.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999863
No 413
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=91.97 E-value=0.042 Score=59.32 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=25.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGC 451 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~ 451 (770)
+.++|.|.|+-||||||+++.|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999998853
No 414
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.94 E-value=0.072 Score=55.06 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.|++.|++|||||||.++|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999763
No 415
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.92 E-value=0.078 Score=53.48 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
...+.|+|.|++|+|||||++.|...
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 45689999999999999999999863
No 416
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.86 E-value=0.068 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+--++.|.||+|||||||+..|+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 345889999999999999998764
No 417
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.85 E-value=0.1 Score=50.74 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=21.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+.+-|+|.|++|+|||||++.|..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 44678999999999999999999976
No 418
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.84 E-value=0.065 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~ 450 (770)
|.|.|++|+|||++|+.++...+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 44699999999999999987654
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.79 E-value=0.086 Score=49.46 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|.+|||||||+++|...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 345688999999999999999999863
No 420
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.78 E-value=0.08 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+.|+|.|++|+|||||.+++..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999864
No 421
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.73 E-value=0.1 Score=56.85 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L 449 (770)
-+.+|.|||||||||+.++|....
T Consensus 27 g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHhc
Confidence 389999999999999999998654
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.72 E-value=0.095 Score=49.53 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+-|+|.|++|||||||++.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 467899999999999999999986
No 423
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.71 E-value=0.093 Score=50.88 Aligned_cols=27 Identities=44% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|++|+|||||++.|...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345688999999999999999999863
No 424
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.64 E-value=0.089 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+.|+|.|++|||||||.+.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567889999999999999999975
No 425
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.63 E-value=0.11 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+-|+|.|++|||||||++.|..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999986
No 426
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.62 E-value=0.08 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+--+++|.|++|||||||++.++..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998653
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.60 E-value=0.088 Score=50.38 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|++|+|||||++.+...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678899999999999999999873
No 428
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.55 E-value=0.082 Score=64.38 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
...+++|+|||||||||+.+.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3468999999999999999998753
No 429
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.48 E-value=0.064 Score=57.13 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 004177 427 IVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.+|.|+|||||||+..+|.-.++
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 888999999999999999997664
No 430
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.43 E-value=0.075 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMA 446 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La 446 (770)
.+++.|+|.|++|||||||.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999998875
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.42 E-value=0.12 Score=49.05 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=23.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..+.+-|+|.|++|||||||++++...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345688999999999999999999853
No 432
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.091 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+..+-|+|.|++|+|||||++.|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999763
No 433
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.41 E-value=0.15 Score=52.35 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 415 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 415 i~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+.....+.+.|+|.|.+|+|||||++.|..
T Consensus 26 ~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 26 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp HHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 334444445678999999999999999999986
No 434
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.084 Score=50.99 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.++.+-|+|.|++|+|||||++.|..
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhc
Confidence 34568899999999999999999986
No 435
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.36 E-value=0.12 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+...+-|+|.|++|||||||.++|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 34678899999999999999999986
No 436
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.36 E-value=0.087 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.+-|+|.|++|||||||++.|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 447899999999999999999985
No 437
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.34 E-value=0.098 Score=49.37 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..++-|+|.|++|||||||.+.+..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 4567899999999999999999975
No 438
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.32 E-value=0.13 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~ 450 (770)
|.|.|++|+|||++++.++..++
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTST
T ss_pred EEEECCCCCcHHHHHHHHHHhcC
Confidence 44699999999999999998764
No 439
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.31 E-value=0.089 Score=63.12 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=29.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 456 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L~~~vis~ 456 (770)
..|.-|.+.||+|+|||+|+++++..+++.++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 3577888999999999999999999998775543
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.28 E-value=0.092 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+..+-|+|.|++|||||||++.+...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 45678999999999999999999763
No 441
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.26 E-value=0.094 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
+.+.||+|+|||++++.++..++..
T Consensus 49 vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCC
Confidence 4458999999999999999988754
No 442
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.14 E-value=0.092 Score=64.08 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+++|+|||||||||+.+.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999854
No 443
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.12 E-value=0.11 Score=49.58 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
..+.|+|.|++|||||||+++|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467889999999999999998753
No 444
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.11 E-value=0.1 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.....|||.|++|||||||.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567999999999999999999998
No 445
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.09 E-value=0.16 Score=51.64 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
.++.++.++|..||||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 446
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.09 E-value=0.13 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+-|+|.|++|+|||||.+++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4567889999999999999999886
No 447
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.08 E-value=0.12 Score=48.24 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHH
Q 004177 426 VIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~ 447 (770)
+-|+|.|++|+|||||++++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5688999999999999999864
No 448
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.07 E-value=0.23 Score=55.78 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 004177 428 VGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L 449 (770)
+.|.||+|+|||++++.|+..+
T Consensus 204 ~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999987
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.03 E-value=0.11 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.116 Sum_probs=21.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.+.|+|.|++|+|||||++++...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678889999999999999999863
No 450
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.02 E-value=0.13 Score=49.44 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+.+-|+|.|++|||||||++.+..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34568899999999999999998876
No 451
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.00 E-value=0.12 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|.+|||||||.++|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4568899999999999999999876
No 452
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.97 E-value=0.13 Score=48.94 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|++|||||||.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999875
No 453
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.95 E-value=0.11 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+...|+|.|++|+|||||.+++..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456889999999999999999986
No 454
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.91 E-value=0.11 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+..+-|+|.|++|+|||||+++|..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHHc
Confidence 3467899999999999999999986
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.91 E-value=0.18 Score=51.93 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHcCCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 418 LLENKGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 418 l~~~~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.......+.|++.|.+|+|||||.+.|..
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 334444578999999999999999999875
No 456
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.90 E-value=0.11 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=19.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+-|+|.|++|+|||||++++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 35688999999999999998853
No 457
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.87 E-value=0.098 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+..+|+|.|++|||||||+++|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999863
No 458
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.87 E-value=0.22 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=21.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..-+.|.||+|+|||+|+.+|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566799999999999999998653
No 459
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.82 E-value=0.13 Score=55.99 Aligned_cols=26 Identities=38% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..++.|.||+|||||||+..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999765
No 460
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.72 E-value=0.16 Score=49.10 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
...+-|+|.|++|+|||||++++...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45788999999999999999999873
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.69 E-value=0.12 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.++..|++.|++|+|||||.+++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 462
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.67 E-value=0.13 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...++.|+|.|.+|||||||++.|..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhC
Confidence 34678999999999999999999975
No 463
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.65 E-value=0.15 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|++|||||||.+++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999985
No 464
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=90.64 E-value=0.12 Score=63.75 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
..+++|+|||||||||+.+.+ ..+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 468999999999999999999 543
No 465
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.63 E-value=0.13 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.++-|+|.|++|+|||||+++|..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999999986
No 466
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.61 E-value=0.11 Score=50.77 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=21.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
....+.|+|.|.+|+|||||++.+..
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34568899999999999999998853
No 467
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.60 E-value=0.13 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.+-|+|.|++|+|||||++++..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 357789999999999999999875
No 468
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.60 E-value=0.13 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+-|+|.|++|+|||||+++|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3567899999999999999999986
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.57 E-value=0.14 Score=49.29 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=22.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|.+|+|||||++++...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 345688999999999999999998863
No 470
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.55 E-value=0.14 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHH
Q 004177 427 IVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 427 iIGI~GpsGSGKTTla~~La~~ 448 (770)
-|+|.|++|+|||||++++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 471
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.54 E-value=0.13 Score=48.47 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.+-|++.|.+|+|||||++++..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 467899999999999999999987
No 472
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.54 E-value=0.1 Score=62.88 Aligned_cols=32 Identities=38% Similarity=0.395 Sum_probs=26.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 455 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~~~vis 455 (770)
.+..+.+.||+|+||||++++|+..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 44567889999999999999999998765443
No 473
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.50 E-value=0.3 Score=51.02 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=28.0
Q ss_pred HHHHHHHcC-CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 414 AIQALLENK-GLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 414 ~i~~l~~~~-~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+....+.. ++...|.+.||+|+|||+|+.+|+..++
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 344555544 4455788999999999999999999653
No 474
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=90.49 E-value=0.096 Score=57.35 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
..+.++|.|-|+-||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34568899999999999999999999875
No 475
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.40 E-value=0.11 Score=49.26 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.+-|+|.|++|+|||||++++..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 467889999999999999999985
No 476
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.36 E-value=0.12 Score=50.44 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.+..+-|+|.|++|||||||++.|..
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 345678899999999999999999864
No 477
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.30 E-value=0.14 Score=49.35 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=22.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
....+-|+|.|.+|+|||||++++...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 345688999999999999999999863
No 478
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.27 E-value=0.17 Score=53.16 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++.|.||.|+|||||++.+++.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 4788999999999999999998765
No 479
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.23 E-value=0.13 Score=54.95 Aligned_cols=35 Identities=31% Similarity=0.297 Sum_probs=27.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccee
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 460 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~~L~~~vis~Ddfy 460 (770)
-.-|.|.|+||+||||++..|... |..+++-|...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~ 178 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE 178 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence 356889999999999999999884 76666555443
No 480
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.21 E-value=0.15 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|++|+|||||.+.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999999986
No 481
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.19 E-value=0.31 Score=52.04 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 004177 416 QALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE 452 (770)
Q Consensus 416 ~~l~~~~~~p~iIGI~GpsGSGKTTla~~La~~L~~~ 452 (770)
....++..-+..+.+.||.|+||||+++.+++.+.+.
T Consensus 15 ~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 3333444445667789999999999999999988654
No 482
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.13 E-value=0.24 Score=52.10 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 426 VIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 426 ~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.++.|.||.|+|||||++.+++.++
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 3888999999999999999998775
No 483
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=90.11 E-value=0.11 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
+.++|.|-|+-||||||+++.|++.++
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999999875
No 484
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.07 E-value=0.13 Score=50.46 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+..+-|+|.|++|+|||||+++|...
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhC
Confidence 345688999999999999999999863
No 485
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.98 E-value=0.12 Score=49.70 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
+..+-|+|.|++|+|||||+++|...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 45688999999999999999999874
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.96 E-value=0.19 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
...+-|+|.|++|+|||||++.|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4568899999999999999999985
No 487
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.89 E-value=0.17 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+.|++.|++|||||||.++|..
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 357899999999999999999986
No 488
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.86 E-value=0.32 Score=52.05 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=25.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~~L~ 450 (770)
.+.+..+-|.||+|+|||++++.+++.+.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677778999999999999999999884
No 489
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.85 E-value=0.18 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
.+.+-|+|.|++|+|||||++++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4578899999999999999998853
No 490
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=89.83 E-value=0.18 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..++.-|.|.|.+||||||+++.+.-
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHHH
Confidence 45678889999999999999999954
No 491
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.83 E-value=0.16 Score=49.40 Aligned_cols=26 Identities=38% Similarity=0.179 Sum_probs=22.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.+.+-|+|.|.+|+|||||+++|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 35688999999999999999999873
No 492
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.82 E-value=0.2 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC
Q 004177 428 VGIGGPSGSGKTSLAHKMANIVG 450 (770)
Q Consensus 428 IGI~GpsGSGKTTla~~La~~L~ 450 (770)
|.|.||+|+|||++++.++..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 55799999999999999999875
No 493
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.80 E-value=0.15 Score=49.93 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.0
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 421 NKGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 421 ~~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+..+-|+|.|++|+|||||+++|..
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhc
Confidence 345568899999999999999999875
No 494
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.79 E-value=0.18 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=19.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH
Q 004177 425 PVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 425 p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+.++.|+|++|||||++|..+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHH
Confidence 56888999999999999988643
No 495
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.78 E-value=0.15 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+..+-|+|.|++|+|||||.+.|..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4467899999999999999999976
No 496
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.76 E-value=0.15 Score=48.53 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 422 KGLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 422 ~~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
..+.+-|+|.|.+|+|||||.++|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 34578899999999999999999975
No 497
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.76 E-value=0.16 Score=50.04 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
...+-|+|.|++|+|||||++.+...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999999873
No 498
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.74 E-value=0.16 Score=55.05 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANIV 449 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~L 449 (770)
+..++.|.|++|||||||+..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998654
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.69 E-value=0.18 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 004177 424 LPVIVGIGGPSGSGKTSLAHKMANI 448 (770)
Q Consensus 424 ~p~iIGI~GpsGSGKTTla~~La~~ 448 (770)
.++.|+|.|++|||||||.++|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999999874
No 500
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.67 E-value=0.15 Score=49.40 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHH
Q 004177 423 GLPVIVGIGGPSGSGKTSLAHKMAN 447 (770)
Q Consensus 423 ~~p~iIGI~GpsGSGKTTla~~La~ 447 (770)
+..+-|+|.|++|+|||||++.|..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999875
Done!