BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004178
(770 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5Q8|HEN1_ARATH Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1
PE=1 SV=1
Length = 942
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/781 (48%), Positives = 502/781 (64%), Gaps = 46/781 (5%)
Query: 1 MRAATRLSEFVVTSEGQLSIWRKDPYPPEIKESSIIQQSESPDSICIEAIHIPSSLEMAV 60
M+AA +L++++V S L RK+ YP EI E+ S+S S + A++IP E V
Sbjct: 175 MKAAAKLADYIVASPHGLR--RKNAYPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVV 232
Query: 61 HPVTLNVSSTGYYLDVIARNLDQTDGNKILVSRTIGKAS--SEMRLYFAAPKSYLLDLSS 118
TL +SS +YLD IA L DGN++++SR GKAS SE RLY PK YL D SS
Sbjct: 233 ELDTLYISSNRHYLDSIAERLGLKDGNQVMISRMFGKASCGSECRLYSEIPKKYL-DNSS 291
Query: 119 DLPNV--EEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRM 176
D E+ S N RASY+ GQDI+GDAILAS+GY KS+ L ++D+T+ S+YR+
Sbjct: 292 DASGTSNEDSSHIVKSRNARASYICGQDIHGDAILASVGYRWKSDDLDYDDVTVNSFYRI 351
Query: 177 LIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSN 236
++P+G+YK+SR+A++ A+LP AFTT++NWRG PRE+L +FC QH L+EP+ S+ +
Sbjct: 352 CCGMSPNGIYKISRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTA 411
Query: 237 SLKESSESSRFYEK------SAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPIL 290
+K S+ R ++K A E+ KE T G G RCEVKIF+KS+D +L
Sbjct: 412 PVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHG----FRCEVKIFTKSQDLVL 467
Query: 291 ECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLVGALDIQCYPQNFFKKF 350
ECSP++FY+K+N++I+NASLK L W + +F D D+ E+ + D + N F
Sbjct: 468 ECSPRKFYEKENDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAP 527
Query: 351 SSYRFIHNVQQRKM----GEKLLQANSINTLNAIPEHGIYCLSIG-GPD---SGIYPSNG 402
+ H+ + + EK +Q+ + ++ +I Y LS+ P+ G P
Sbjct: 528 PILQKEHSSESKNTNVLSAEKRVQSITNGSVVSI----CYSLSLAVDPEYSSDGESPRED 583
Query: 403 CLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKEL 462
S E+ EL+ES EE EFE+GTG++ P +E QM+VG+ A F +
Sbjct: 584 NESNEEMESEYSANCESSVELIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASF-RMT 642
Query: 463 PP---QELILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQR 519
PP + LILA D+ R SLLS R C L Y+I LL V P E+RME A F PPLSKQR
Sbjct: 643 PPDAAEALILAVGSDTVRIRSLLSERPC-LNYNILLLGVKGPSEERMEAAFFKPPLSKQR 701
Query: 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 579
VEYAL+HI+ES A+TLVDFGCGSGSLLDSLLDYPT+L+ I+GVDIS K L+RAAK++H K
Sbjct: 702 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 761
Query: 580 LSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 639
L+K+ +VKSA L+DGSI FDSRLH DIGTCLEVIEHMEED+A +FG VLS
Sbjct: 762 LNKE------ACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLS 815
Query: 640 SFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCW 699
F P++LIVSTPNYE+N ILQ+S+ QE++ E Q KFRNHDHKFEWTR+QFN W
Sbjct: 816 LFHPKLLIVSTPNYEFNTILQRSTPETQEENNSEP---QLPKFRNHDHKFEWTREQFNQW 872
Query: 700 ATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPEEDDLLKDGDSAHHYKVIWE 759
A++L RHNYSVEFSGVGGSG+ EPGFASQIA+FR E+ S YKVIWE
Sbjct: 873 ASKLGKRHNYSVEFSGVGGSGEVEPGFASQIAIFRREASSVEN---VAESSMQPYKVIWE 929
Query: 760 W 760
W
Sbjct: 930 W 930
>sp|Q5T8I9|HENMT_HUMAN Small RNA 2'-O-methyltransferase OS=Homo sapiens GN=HENMT1 PE=2
SV=1
Length = 393
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 24/250 (9%)
Query: 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570
F PPL +QR ++ + + + D GCG SLL LL +E +VGVDI++ L
Sbjct: 27 FKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTSLL-RLLKVNPCIELLVGVDINEDKLR 85
Query: 571 RAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
+ L D P + L+ GS+ DSRL GFD+ TC+E+IEH++ +
Sbjct: 86 WRGDSLAPFLG---DFLKPRDLNLTITLYHGSVVERDSRLLGFDLITCIELIEHLDSGDL 142
Query: 631 SQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 690
++F +V P ++++STPN E+N + S R+ DHKFE
Sbjct: 143 ARFPEVVFGYLSPSMIVISTPNSEFNPL------------------FPSVTLRDSDHKFE 184
Query: 691 WTRDQFNCWATELAARHNYSVEFSGVG--GSGDREPGFASQIAVFRSRTPPEEDDLLKDG 748
WTR +F WA +A R++YSVEF+GVG +G G+ +QI +FR + L +
Sbjct: 185 WTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFRKNGGKATESCLSEQ 244
Query: 749 DSAHHYKVIW 758
H YK ++
Sbjct: 245 HDQHVYKAVF 254
>sp|Q32PY6|HENMT_RAT Small RNA 2'-O-methyltransferase OS=Rattus norvegicus GN=Henmt1
PE=2 SV=1
Length = 394
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 26/251 (10%)
Query: 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570
F PPL KQR ++ + + D GCG LL L YP ++ +VGVDI+++ L
Sbjct: 27 FRPPLYKQRYQFVRDLVDRHEPKKVADLGCGDTKLLKLLKIYP-CIQLLVGVDINEEKLH 85
Query: 571 RAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDE 629
+LS L V D+ V L+ GS+ DSRL GFD+ TC+E+IEH++ D+
Sbjct: 86 SNGH----RLSPYLGEFVKPRDLDLTVTLYHGSVVERDSRLLGFDLITCIELIEHLDSDD 141
Query: 630 ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 689
++F +V P ++++STPN E+N + + R+ DHKF
Sbjct: 142 LARFPEVVFGYLSPAMVVISTPNAEFNPL------------------FPTVTLRDADHKF 183
Query: 690 EWTRDQFNCWATELAARHNYSVEFSGVGG--SGDREPGFASQIAVFRSRTPPEEDDLLKD 747
EW+R +F WA+++A +NY VEF+GVG +G G+ +QI VFR +
Sbjct: 184 EWSRMEFQTWASQVANCYNYCVEFTGVGTPPAGSEHVGYCTQIGVFRKNGGKLSEPSASQ 243
Query: 748 GDSAHHYKVIW 758
H YK ++
Sbjct: 244 QRDQHVYKAVY 254
>sp|Q8CAE2|HENMT_MOUSE Small RNA 2'-O-methyltransferase OS=Mus musculus GN=Henmt1 PE=1
SV=1
Length = 395
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 26/226 (11%)
Query: 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570
F PPL KQR ++ + + D GCG LL L YP ++ +VGVDI+++ L
Sbjct: 28 FKPPLYKQRYQFVRDLVDRHEPKKVADLGCGDAKLLKLLKIYP-CIQLLVGVDINEEKLH 86
Query: 571 RAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDE 629
+LS L V D+ V L+ GS+ DSRL GFD+ TC+E+IEH++ D+
Sbjct: 87 SNG----HRLSPYLGEFVKPRDLDLTVTLYHGSVVERDSRLLGFDLITCIELIEHLDSDD 142
Query: 630 ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 689
++F ++V P ++++STPN E+N + + R+ DHKF
Sbjct: 143 LARFPDVVFGYLSPAMVVISTPNAEFNPL------------------FPTVTLRDADHKF 184
Query: 690 EWTRDQFNCWATELAARHNYSVEFSGVGG--SGDREPGFASQIAVF 733
EW+R +F WA +A +NY VEF+GVG +G G+ +QI VF
Sbjct: 185 EWSRMEFQTWALHVANCYNYRVEFTGVGTPPAGSEHVGYCTQIGVF 230
>sp|C0IN03|HENMT_XENTR Small RNA 2'-O-methyltransferase OS=Xenopus tropicalis GN=henmt1
PE=2 SV=1
Length = 369
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 23/254 (9%)
Query: 506 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 565
ME F PPL +QR ++ ++ + D GC + SLL +L + ++ +VG+DI
Sbjct: 1 MELEFFKPPLYQQRYQFVKSYVDTYKPKKVADLGCSTCSLLHTL-RFWDCIKVLVGLDID 59
Query: 566 QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625
+ LSR + + L+ P + L+ GS+T D L GFD+ TC+E+IEH+
Sbjct: 60 EDVLSRKKFTLTPLPAHYLE---PRNTSLTINLYQGSVTQKDPALLGFDLITCIELIEHL 116
Query: 626 EEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 685
E +E F ++ P +I+STPN E+N + K + FR+
Sbjct: 117 EAEELENFREVLFGFMAPITVIISTPNAEFNILFPKCTG-----------------FRHP 159
Query: 686 DHKFEWTRDQFNCWATELAARHNYSVEFSGVG--GSGDREPGFASQIAVFRSRTPPEEDD 743
DHKFEW R +F WATE+A NY+VE +GVG + GF SQIAVF E+
Sbjct: 160 DHKFEWNRREFQSWATEVAKCFNYTVEITGVGEPPRDSKNVGFCSQIAVFTRNYTESEES 219
Query: 744 LLKDGDSAHHYKVI 757
L + + YK +
Sbjct: 220 LQRKMECKSVYKTV 233
>sp|E1BVR9|HENMT_CHICK Small RNA 2'-O-methyltransferase OS=Gallus gallus GN=HENMT1 PE=3
SV=1
Length = 376
Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 127/251 (50%), Gaps = 23/251 (9%)
Query: 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570
F+PPL KQR E+ +++ + D GC +LL +L + + +E + G+DI + +
Sbjct: 16 FTPPLYKQRYEFVQDLVRKYEPKKVADLGCADCTLL-WMLKFCSCIEVLAGLDICETVMK 74
Query: 571 RAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
+H D P L GS+ D + GFD+ TC+E+IEH++E E
Sbjct: 75 EK---MHRLTPLPADYLEPSERSLIVTLHQGSVAHKDPCMLGFDLVTCIELIEHLQESEL 131
Query: 631 SQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 690
+F +V P ++++STPN E+N +L + FR+ DHKFE
Sbjct: 132 EKFPEVVFGFMAPNMVVISTPNSEFNTLLPGVTV-----------------FRHPDHKFE 174
Query: 691 WTRDQFNCWATELAARHNYSVEFSGVGG--SGDREPGFASQIAVFRSRTPPEEDDLLKDG 748
W R QF WA + A R+ YSVEF+GVG +G + GF +QI VF + P + + ++
Sbjct: 175 WDRAQFQSWAQDTAERYEYSVEFTGVGSPPTGMEDVGFCTQIGVFVKKYPQTREPVQREK 234
Query: 749 DSAHHYKVIWE 759
+ YK +++
Sbjct: 235 PTEAAYKTVFK 245
>sp|Q4R3W5|HENMT_MACFA Small RNA 2'-O-methyltransferase OS=Macaca fascicularis GN=HENMT1
PE=2 SV=1
Length = 393
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 127/250 (50%), Gaps = 24/250 (9%)
Query: 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570
F PPL +QR ++ + + + D GCG SLL LL +E +VGVDI++ L
Sbjct: 27 FKPPLYRQRYQFVKNLVDQHEPKKVADLGCGDTSLL-RLLKVNPCIELLVGVDINEDKLR 85
Query: 571 RAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
+ + D P + +L+ GS+ DSRL GFD+ TC+E+IEH++ +
Sbjct: 86 WRGDSLAPFMG---DFLKPRDLNLTIILYHGSVVERDSRLLGFDLITCIELIEHLDSGDL 142
Query: 631 SQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFE 690
++F +V P ++++STPN E+N + S R+ DHKFE
Sbjct: 143 ARFPEVVFGYLSPSMIVISTPNSEFNPL------------------FPSVTLRDSDHKFE 184
Query: 691 WTRDQFNCWATELAARHNYSVEFSGVG--GSGDREPGFASQIAVFRSRTPPEEDDLLKDG 748
WTR +F WA +A R++YSVEF+GVG +G G+ +QI +F+ + + +
Sbjct: 185 WTRMEFQTWALYVANRYDYSVEFTGVGEPPAGAENVGYCTQIGIFQKNGGRATEACVSEQ 244
Query: 749 DSAHHYKVIW 758
H YK ++
Sbjct: 245 HDQHVYKAVF 254
>sp|Q568P9|HENMT_DANRE Small RNA 2'-O-methyltransferase OS=Danio rerio GN=henmt1 PE=1 SV=2
Length = 402
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 119/231 (51%), Gaps = 22/231 (9%)
Query: 506 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 565
M FSPPL QR ++ + ++K ++DFGC LL L + ++ +VGVDI+
Sbjct: 1 MTATPFSPPLYMQRYQFVIDYVKTYRPRKVIDFGCAECCLLKKLKFHRNGIQLLVGVDIN 60
Query: 566 QKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625
L K +HS D P + L+ GS+ + GFD+ TC+E+IEH+
Sbjct: 61 SVVL---LKRMHSLAPLVSDYLQPSDGPLTIELYQGSVMEREPCTKGFDLVTCVELIEHL 117
Query: 626 EEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNH 685
E +E +F +V P +IV+TPN E+N +L FRN+
Sbjct: 118 ELEEVERFSEVVFGYMAPGAVIVTTPNAEFNPLLPGLRG-----------------FRNY 160
Query: 686 DHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGD--REPGFASQIAVFR 734
DHKFEWTR +F WA + H YSV+F+GVG + R+ GF +QIAVF+
Sbjct: 161 DHKFEWTRAEFQTWAHRVCREHGYSVQFTGVGEAAGHWRDVGFCTQIAVFQ 211
>sp|Q9UST9|HENMT_SCHPO Small RNA 2'-O-methyltransferase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC336.05c PE=3 SV=1
Length = 378
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 120/259 (46%), Gaps = 27/259 (10%)
Query: 511 FSPPLSKQRVEYALQHIKESCAT-TLVDFGCGSGSLLDSLL--DYPTALEKIVGVDISQK 567
F PPL QR + ++ +L+D GCG L L+ + +E + G+DI+++
Sbjct: 6 FYPPLHVQRRRKLFKILQGGFPVRSLLDIGCGDARFLSYLVPCNDQVPIEFLAGIDINEQ 65
Query: 568 SLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE 627
S+ RA + + + L ++ L G+I F H D E IEH +
Sbjct: 66 SIERATEALQVRTEDFLQLRWRPLHIE---LLLGNIKDFTHYKH-VDAVVASEFIEHCQV 121
Query: 628 DEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 687
E F +V + +P + +VSTPN+E+N I +K S+ + S FR+ +H
Sbjct: 122 AEILAFEKLVFGNLKPNVCVVSTPNFEFNTIFEKLSTLTS-----SISSRTSTNFRHPEH 176
Query: 688 KFEWTRDQFNCWATELAARH-NYSVEFSGVGGSGD-------------REPGFASQIAVF 733
FEW R +F WA ++ R+ Y+VEF+G G D GF +QIAVF
Sbjct: 177 VFEWDRKEFAKWAYKICKRYPEYTVEFTGCGLLNDLIDGDDLLHFRPSSTYGFCTQIAVF 236
Query: 734 -RSRTPPEEDDLLKDGDSA 751
+S+ LKD +S+
Sbjct: 237 HQSKNNAASHCFLKDQNSS 255
>sp|P34283|YKK6_CAEEL Uncharacterized protein C02F5.6 OS=Caenorhabditis elegans
GN=C02F5.6 PE=4 SV=2
Length = 450
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 112/248 (45%), Gaps = 38/248 (15%)
Query: 508 QALFSPPLSKQRVEYALQHIKESCATTLVD------FGCGSGSLLDSLLDYPTALEKI-- 559
+ F PPL QR + + E ++ +D GCG SL + +Y + I
Sbjct: 88 KNFFQPPLQVQRNSFVKNTLMEFKRSSQIDISRLAVMGCGEMSLEKGICEYLGSFGTINV 147
Query: 560 VGVDISQKSLSRAAKIIHSK----LSKKL--DAAVPCTDVKSAVL---FDGSITVFDSRL 610
+ VDI + SLS +++ L K L +A + + VL + G I D R
Sbjct: 148 LSVDIDEPSLSIGQQLLGKAESIFLRKHLERNAEILAVETGLPVLMRSYVGDILEPDHRF 207
Query: 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDD 670
D +EV+EH+ A +F VL + PRI I STPN+EYNA+
Sbjct: 208 ADVDAIVSMEVVEHIPLPNAKKFVENVLGTLMPRIFIFSTPNHEYNAVF----------- 256
Query: 671 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARH-NYSVE---FSGVGGSGDREPGF 726
++ +FR+ DHKFE R +F+ W EL+ R +Y ++ + G+ + G
Sbjct: 257 -----GMEPGEFRHGDHKFEMNRKEFSNWLEELSIRFPHYQIDPPHYIGMTRGYENLSG- 310
Query: 727 ASQIAVFR 734
ASQ AV R
Sbjct: 311 ASQAAVCR 318
>sp|Q7K175|HENMT_DROME Small RNA 2'-O-methyltransferase OS=Drosophila melanogaster GN=Hen1
PE=1 SV=1
Length = 391
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 511 FSPPLSKQRVEYALQHIKES----CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 566
F PP+ +QR +Q ++++ +V+FGC L+ +E I VDI +
Sbjct: 21 FDPPVYEQRYCATIQILEDARWKDQIKKVVEFGCAEMRFF-QLMRRIETIEHIGLVDIDK 79
Query: 567 KSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 626
L R ++ +S + + V+ + G++ L D +E+IEH+
Sbjct: 80 SLLMRNLTSVNPLVSDYIRSRASPLKVQ---ILQGNVADSSEELRDTDAVIAIELIEHVY 136
Query: 627 EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHD 686
+D ++ + +P++++ STPN ++N I + + L FR+ D
Sbjct: 137 DDVLAKIPVNIFGFMQPKLVVFSTPNSDFNVIFTRFNP------------LLPNGFRHED 184
Query: 687 HKFEWTRDQFNCWATELAARH-NYSVEFSGVGGSGD--REPGFASQIAVF 733
HKFEW+RD+F W + ++ NY +GVG G SQIA+F
Sbjct: 185 HKFEWSRDEFKNWCLGIVEKYPNYMFSLTGVGNPPKEYESVGPVSQIAIF 234
>sp|Q230X8|HENMT_TETTS Small RNA 2'-O-methyltransferase OS=Tetrahymena thermophila (strain
SB210) GN=HEN1 PE=1 SV=3
Length = 423
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 613 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPD 672
+D +E+IEH++ ++ + RP+ +IV+TPN ++N
Sbjct: 117 YDAVILVELIEHLQVEDVFLIEQNLFGFLRPQFVIVTTPNSDFNVYFNFKE--------- 167
Query: 673 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVG--GSGDREPGFASQ 729
Q FR+ DHKFEW+++QF WA ++ + Y V E +GVG + + GF +Q
Sbjct: 168 -----QGVLFRDKDHKFEWSQNQFQIWAQKVCQNYGYKVIELTGVGEHKTEGTKNGFCTQ 222
Query: 730 IAVFRSRTPPEE 741
I VF T E+
Sbjct: 223 IVVFEKDTQQEK 234
>sp|Q9JWE6|UBIG_NEIMA 3-demethylubiquinone-9 3-methyltransferase OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiG PE=3 SV=1
Length = 238
Score = 50.4 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R++Y H + C ++D GCG G L +S+ A K G+D++++SL A +H+
Sbjct: 40 RLDYIDGH-ADLCGKRVLDVGCGGGILAESMARRGAAFVK--GIDMAEQSLETAR--LHA 94
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
L+ D C V+ + ++ H FD+ TC+E++EH+ + A
Sbjct: 95 ALNNVADIEYECIRVED---------LAEAEPHSFDVVTCMEMMEHVPDPAA 137
>sp|Q9JXI7|UBIG_NEIMB 3-demethylubiquinone-9 3-methyltransferase OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiG PE=3 SV=2
Length = 238
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R++Y H + C ++D GCG G L +S+ A K G+D++++SL A +H+
Sbjct: 40 RLDYIDGH-ADLCGKRVLDVGCGGGILAESMARRGAAFVK--GIDMAEQSLETAR--LHA 94
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
L+ D C V+ + ++ H FD+ TC+E++EH+ + A
Sbjct: 95 ALNNVADIEYECIRVED---------LAEAEPHSFDVVTCMEMMEHVPDPAA 137
>sp|A9M0C4|UBIG_NEIM0 3-demethylubiquinone-9 3-methyltransferase OS=Neisseria
meningitidis serogroup C (strain 053442) GN=ubiG PE=3
SV=1
Length = 238
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 13/96 (13%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594
++D GCG G L +S+ A K G+D++++SL A +H+ L+ D C V+
Sbjct: 55 VLDVGCGGGILAESMARRGAAFVK--GIDMAEQSLETAR--LHAALNNVADIEYECIRVE 110
Query: 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
+ ++ H FD+ TC+E++EH+ + A
Sbjct: 111 D---------LAEAEPHSFDVVTCMEMMEHVPDPAA 137
>sp|Q21UL3|UBIG_RHOFD 3-demethylubiquinone-9 3-methyltransferase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=ubiG PE=3 SV=1
Length = 252
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+E+ + H+ ++D GCG G L DS+ ++ G+D++ K+L R A++
Sbjct: 51 RLEW-INHLCPVAGQQVLDVGCGGGILADSMARLGA---QVTGIDLASKAL-RVAQL--- 102
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG-FDIGTCLEVIEHMEE 627
L+A P + + S+ ++ G FD+ TC+E++EH+ +
Sbjct: 103 ---HALEAQTPNLQYQ-----EISVEALAAQQPGSFDVVTCMEMLEHVPD 144
>sp|Q5QZ53|UBIG_IDILO 3-demethylubiquinone-9 3-methyltransferase OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=ubiG PE=3
SV=1
Length = 243
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 15/112 (13%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+ + H ++D GCG G L +++ + ++ GVD++++SL + A++
Sbjct: 45 RLGFIENHTDGLFGKKVLDVGCGGGLLSEAMAERGA---QVTGVDLAEQSL-KVARLHAL 100
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
+ +++D C ++ T+ D + FD+ TCLE++EH+ + +A
Sbjct: 101 ESGRQID--YQCIAIE---------TLADQQPASFDVVTCLEMLEHVPDPKA 141
>sp|A9KGL7|UBIG_COXBN 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=ubiG PE=3 SV=1
Length = 234
Score = 39.7 bits (91), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 30/171 (17%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R++Y Q I ++D GCG G L ++L + + GVD+S+ + A H+
Sbjct: 40 RLKYIEQQITLK-GKHVLDVGCGGGLLSEALAKHGAI---VTGVDMSESLIDVAKN--HA 93
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDE--------- 629
+ ++L+ C D++ + FDI TC+E++EH+ + +
Sbjct: 94 E-QQQLNINYQCQDIE----------ILTKDAQRFDIITCMELLEHVPDPQRMIKNCAAL 142
Query: 630 ----ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 676
F + + +F+ + + Y +N + + + Q P E TQ
Sbjct: 143 IKPGGKLFFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQFIHPSELTQ 193
>sp|Q9I0S1|TAM_PSEAE Trans-aconitate 2-methyltransferase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=tam PE=3 SV=1
Length = 275
Score = 39.7 bits (91), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574
L ++ V L HI+ C + D GCG+G + LL L ++ GVD S + L AA+
Sbjct: 27 LRQRPVVELLDHIEPCCPERIYDLGCGTG-IATELLARRWPLAELYGVDSSVEMLEEAAR 85
Query: 575 IIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606
+ ++ + C + +++LF ++ F
Sbjct: 86 LPIKASWERANLRHWCAERPASLLFAAAVLHF 117
>sp|Q820B5|UBIG_COXBU 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=ubiG PE=3 SV=1
Length = 234
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 502 PEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVG 561
P +M+ P+ R++Y Q I ++D GCG G L ++L + + G
Sbjct: 26 PAGKMKPLHLINPV---RLKYIEQQITLK-GKHVLDVGCGGGLLSEALAKHGAI---VTG 78
Query: 562 VDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV 621
VD+S+ + A H++ ++L+ C D++ + FDI TC+E+
Sbjct: 79 VDMSESLIDVAKN--HAE-QQQLNINYQCQDIE----------ILTKDAQRFDIITCMEL 125
Query: 622 IEHMEEDE-------------ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 668
+EH+ + + F + + +F+ + + Y +N + + + Q
Sbjct: 126 LEHVPDPQRMIKNCAALIKPGGKLFFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQF 185
Query: 669 DDPDEKTQ 676
P E TQ
Sbjct: 186 IRPSELTQ 193
>sp|A9NBI0|UBIG_COXBR 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=ubiG PE=3 SV=1
Length = 234
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 502 PEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVG 561
P +M+ P+ R++Y Q I ++D GCG G L ++L + + G
Sbjct: 26 PAGKMKPLHLINPV---RLKYIEQQITLK-GKHVLDVGCGGGLLSEALAKHGAI---VTG 78
Query: 562 VDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV 621
VD+S+ + A H++ ++L+ C D++ + FDI TC+E+
Sbjct: 79 VDMSESLIDVAKN--HAE-QQQLNINYQCQDIE----------ILTKDAQRFDIITCMEL 125
Query: 622 IEHMEEDE-------------ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 668
+EH+ + + F + + +F+ + + Y +N + + + Q
Sbjct: 126 LEHVPDPQRMIKNCAALIKPGGKLFFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQF 185
Query: 669 DDPDEKTQ 676
P E TQ
Sbjct: 186 IRPSELTQ 193
>sp|B6J1W2|UBIG_COXB2 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii
(strain CbuG_Q212) GN=ubiG PE=3 SV=1
Length = 234
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 33/188 (17%)
Query: 502 PEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVG 561
P +M+ P+ R++Y Q I ++D GCG G L ++L + + G
Sbjct: 26 PAGKMKPLHLINPV---RLKYIEQQITLK-GKHVLDVGCGGGLLSEALAKHGAI---VTG 78
Query: 562 VDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEV 621
VD+S+ + A H++ ++L+ C D++ + FDI TC+E+
Sbjct: 79 VDMSESLIDVAKN--HAE-QQQLNINYQCQDIE----------ILTKDAQRFDIITCMEL 125
Query: 622 IEHMEEDE-------------ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 668
+EH+ + + F + + +F+ + + Y +N + + + Q
Sbjct: 126 LEHVPDPQRMIKNCAALIKPGGKLFFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQF 185
Query: 669 DDPDEKTQ 676
P E TQ
Sbjct: 186 IRPSELTQ 193
>sp|B6J5Y2|UBIG_COXB1 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii
(strain CbuK_Q154) GN=ubiG PE=3 SV=1
Length = 234
Score = 39.7 bits (91), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 30/171 (17%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R++Y Q I ++D GCG G L ++L + + GVD+S+ + A H+
Sbjct: 40 RLKYIEQQITLK-GKHVLDVGCGGGLLSEALAKHGAI---VTGVDMSESLIDVAKN--HA 93
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDE--------- 629
+ ++L+ C D++ + FDI TC+E++EH+ + +
Sbjct: 94 E-QQQLNINYQCQDIE----------ILTKDAQRFDIITCMELLEHVPDPQRMIKNCAAL 142
Query: 630 ----ASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 676
F + + +F+ + + Y +N + + + Q P E TQ
Sbjct: 143 IKPGGKLFFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQFIRPSELTQ 193
>sp|Q7VZG7|UBIG_BORPE 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=ubiG
PE=3 SV=1
Length = 241
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD-AAVPCTDV 593
++D GCG G L +S+ A ++ G+D+++KSL + A++ + K+D AVP ++
Sbjct: 62 VLDMGCGGGILSESMA---VAGAQVTGIDLAEKSL-KIARLHGLESGVKVDYRAVPVEEL 117
Query: 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE 627
+ + +D+ TC+E++EH+ +
Sbjct: 118 AA------------EQPGQYDVVTCMEMLEHVPD 139
>sp|Q54XD0|COQ3_DICDI Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial
OS=Dictyostelium discoideum GN=coq3 PE=3 SV=1
Length = 321
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 504 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVD 563
DR++ +++ +SK + L+ ++D GCG G L +SL K+VG+D
Sbjct: 108 DRLK--IYNEKVSKNPIHLPLE------GLNVIDVGCGVGLLTESL--SRLGASKVVGLD 157
Query: 564 ISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLHGFDIGTCLEV 621
++ ++ A I H+ +KL+ + KS + +I F + FD LEV
Sbjct: 158 AAKNNILMA--ISHASFDQKLNENIQN---KSLNYLESTIENFYNIENDQQFDAVCSLEV 212
Query: 622 IEHMEEDEASQFGNIVLSSFRP 643
IEH+ D QF + + +P
Sbjct: 213 IEHV--DNPKQFIDYLSKIVKP 232
>sp|Q7NZ91|UBIG_CHRVO 3-demethylubiquinone-9 3-methyltransferase OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiG PE=3 SV=1
Length = 232
Score = 37.4 bits (85), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 21/99 (21%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592
++D GCG G L +S+ AL ++ G+D+++KSL A +HS L++ VP D
Sbjct: 51 VLDVGCGGGILAESM-----ALRGAQVTGIDLAKKSLKVAQ--LHS-----LESGVP-ID 97
Query: 593 VKSAVLFDGSITVFDSRLHG-FDIGTCLEVIEHMEEDEA 630
+ + D + + G FD TC+E++EH+ + E+
Sbjct: 98 YRCVAVED-----LAAEMPGAFDAVTCMEMLEHVPDPES 131
>sp|Q7WGT9|UBIG_BORBR 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=ubiG PE=3 SV=2
Length = 241
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD-AAVPCTDV 593
++D GCG G L +S+ A ++ G+D+++KSL + A++ + K+D AVP ++
Sbjct: 62 VLDVGCGGGILSESMA---VAGAQVTGIDLAEKSL-KIARLHGLESGVKVDYRAVPVEEL 117
Query: 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE 627
+ + +D+ TC+E++EH+ +
Sbjct: 118 AT------------EQPGQYDVVTCMEMLEHVPD 139
>sp|Q7W5Z6|UBIG_BORPA 3-demethylubiquinone-9 3-methyltransferase OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=ubiG PE=3 SV=2
Length = 241
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLD-AAVPCTDV 593
++D GCG G L +S+ A ++ G+D+++KSL + A++ + K+D AVP ++
Sbjct: 62 VLDVGCGGGILSESMA---VAGAQVTGIDLAEKSL-KIARLHGLESGVKVDYRAVPVEEL 117
Query: 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE 627
+ + +D+ TC+E++EH+ +
Sbjct: 118 AA------------EQPGQYDVVTCMEMLEHVPD 139
>sp|C3LLV3|UBIG_VIBCM 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=ubiG PE=3 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+ Y L+ ++D GCG G L +S+ ++ G+D+ ++ L A +H+
Sbjct: 49 RLNYVLEKANGLFGKRVLDVGCGGGILAESMAREGA---QVTGLDMGKEPLEVAR--LHA 103
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625
L+ T ++S V ++ H +D+ TC+E++EH+
Sbjct: 104 -----LETGTKLTYIQSTVEAHA-----EANPHTYDVVTCMEMLEHV 140
>sp|Q9KSJ9|UBIG_VIBCH 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=ubiG PE=3 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+ Y L+ ++D GCG G L +S+ ++ G+D+ ++ L A +H+
Sbjct: 49 RLNYVLEKANGLFGKRVLDVGCGGGILAESMAREGA---QVTGLDMGKEPLEVAR--LHA 103
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625
L+ T ++S V ++ H +D+ TC+E++EH+
Sbjct: 104 -----LETGTKLTYIQSTVEAHA-----EANPHTYDVVTCMEMLEHV 140
>sp|A5F1U0|UBIG_VIBC3 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=ubiG PE=3 SV=1
Length = 245
Score = 37.0 bits (84), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+ Y L+ ++D GCG G L +S+ ++ G+D+ ++ L A +H+
Sbjct: 49 RLNYVLEKANGLFGKRVLDVGCGGGILAESMAREGA---QVTGLDMGKEPLEVAR--LHA 103
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625
L+ T ++S V ++ H +D+ TC+E++EH+
Sbjct: 104 -----LETGTKLTYIQSTVEAHA-----EANPHTYDVVTCMEMLEHV 140
>sp|Q7N2M5|UBIG_PHOLL 3-demethylubiquinone-9 3-methyltransferase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=ubiG PE=3
SV=1
Length = 240
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578
R+ Y LQ ++D GCG G L +S+ + G+D+ + L A +H+
Sbjct: 44 RLNYILQRSGGIFGKKVLDVGCGGGILSESMAREGA---DVTGLDMGTEPLQVAR--LHA 98
Query: 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEA 630
L+ +P T V+ V + +DI TC+E++EH+ + ++
Sbjct: 99 -----LETGIPVTYVQETVESHA-----EKYPQAYDIVTCMEMLEHVPDPQS 140
>sp|Q489G6|PRMA_COLP3 Ribosomal protein L11 methyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=prmA PE=3
SV=1
Length = 293
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-AKIIHSKLSKKLDAAVP 589
T+VDFGCGSG L SL +K++G+DI ++L + A + +S +L+ +P
Sbjct: 162 TVVDFGCGSGIL--SLAALKLGAKKVIGIDIDPQALQASLANAERNNVSDRLELYLP 216
>sp|Q5P7U3|UBIG_AROAE 3-demethylubiquinone-9 3-methyltransferase OS=Aromatoleum
aromaticum (strain EbN1) GN=ubiG PE=3 SV=1
Length = 234
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 17/92 (18%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594
++D GCG G L +S+ A + G+D+S+K+L A++ + +K+D
Sbjct: 52 VLDIGCGGGILSESM---AAAGAHVTGIDLSEKALG-VARLHLFESGQKVD--------- 98
Query: 595 SAVLFDGSITVFDSRLHG-FDIGTCLEVIEHM 625
S F ++ G FDI TC+E++EH+
Sbjct: 99 ---YHHASAEEFAAQHAGEFDIVTCMEMLEHV 127
>sp|P48375|FKB12_DROME 12 kDa FK506-binding protein OS=Drosophila melanogaster
GN=FK506-bp2 PE=3 SV=2
Length = 108
Score = 36.6 bits (83), Expect = 0.85, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 384 GIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQV 443
G+ + I D YP NG + Y+ +L +G + + F+F +G G VI
Sbjct: 2 GVQVVPIAPGDGSTYPKNGQKVTVHYTGTL-DDGTKFDSSRDRNKPFKFTIGKGEVIRGW 60
Query: 444 EVVTAQMSVGQSA 456
+ AQ+SVGQ A
Sbjct: 61 DEGVAQLSVGQRA 73
>sp|A7ZRW7|RLMG_ECO24 Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rlmG PE=3 SV=1
Length = 378
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSK 579
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + +
Sbjct: 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRMNVETN 275
Query: 580 LSKKLD 585
+ + LD
Sbjct: 276 MPEALD 281
>sp|A8A4P1|RLMG_ECOHS Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O9:H4 (strain HS) GN=rlmG PE=3 SV=1
Length = 378
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRMNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|P44074|Y912_HAEIN Uncharacterized protein HI_0912 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0912 PE=4 SV=1
Length = 254
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574
L+D GCG+G L L+ A K++G D+S+K L +A K
Sbjct: 48 LLDLGCGTGGHLQLYLERGAA--KVIGTDLSEKMLEQAEK 85
>sp|Q9VL78|FKB59_DROME FK506-binding protein 59 OS=Drosophila melanogaster GN=FKBP59 PE=1
SV=1
Length = 439
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 399 PSNGCLSFISYSVSLVIEGETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACF 458
P +GC + Y+ LV +G L E FEF +G G VI ++ A M +G+ CF
Sbjct: 29 PHSGCTVSLHYTGRLV-DGTEFDSSLSRNEPFEFSLGKGNVIKAFDMGVATMKLGER-CF 86
>sp|Q0T0I4|RLMG_SHIF8 Ribosomal RNA large subunit methyltransferase G OS=Shigella
flexneri serotype 5b (strain 8401) GN=rlmG PE=3 SV=2
Length = 378
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|B1LFI2|RLMG_ECOSM Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q0TD22|RLMG_ECOL5 Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q3YXQ6|RLMG_SHISS Ribosomal RNA large subunit methyltransferase G OS=Shigella sonnei
(strain Ss046) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q31WU9|RLMG_SHIBS Ribosomal RNA large subunit methyltransferase G OS=Shigella boydii
serotype 4 (strain Sb227) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|B2U1T3|RLMG_SHIB3 Ribosomal RNA large subunit methyltransferase G OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rlmG PE=3
SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q1R6P6|RLMG_ECOUT Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
(strain UTI89 / UPEC) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q8FDE5|RLMG_ECOL6 Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rlmG PE=3
SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|A1AG02|RLMG_ECOK1 Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O1:K1 / APEC GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|B5YRC4|RLMG_ECO5E Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rlmG PE=3 SV=1
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
>sp|Q8XAK8|RLMG_ECO57 Ribosomal RNA large subunit methyltransferase G OS=Escherichia coli
O157:H7 GN=rlmG PE=3 SV=3
Length = 378
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSKL 580
+ +QH+ E+ +VD GCG+G + +LLD P A K+V VD S +++ + + + +
Sbjct: 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA--KVVFVDESPMAVASSRLNVETNM 276
Query: 581 SKKLD 585
+ LD
Sbjct: 277 PEALD 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 281,271,270
Number of Sequences: 539616
Number of extensions: 11635191
Number of successful extensions: 31297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 31181
Number of HSP's gapped (non-prelim): 133
length of query: 770
length of database: 191,569,459
effective HSP length: 125
effective length of query: 645
effective length of database: 124,117,459
effective search space: 80055761055
effective search space used: 80055761055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)