Query 004178
Match_columns 770
No_of_seqs 464 out of 2488
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 18:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1045 Uncharacterized conser 100.0 3.4E-42 7.3E-47 370.3 3.0 380 100-551 6-397 (404)
2 COG2227 UbiG 2-polyprenyl-3-me 99.7 6.4E-18 1.4E-22 174.7 9.8 174 515-718 40-218 (243)
3 PLN02396 hexaprenyldihydroxybe 99.7 3.1E-16 6.7E-21 170.0 18.7 162 531-720 131-294 (322)
4 KOG1045 Uncharacterized conser 99.7 4.1E-17 8.9E-22 177.1 3.8 242 504-760 20-267 (404)
5 COG2226 UbiE Methylase involve 99.6 1.7E-15 3.7E-20 157.8 14.7 115 515-644 35-149 (238)
6 PF01209 Ubie_methyltran: ubiE 99.6 3E-15 6.4E-20 155.6 11.9 117 522-652 38-158 (233)
7 PLN02233 ubiquinone biosynthes 99.6 1.7E-14 3.7E-19 151.7 17.4 120 523-653 65-185 (261)
8 KOG1270 Methyltransferases [Co 99.6 4.2E-15 9.2E-20 155.1 9.7 171 510-702 57-239 (282)
9 PRK11036 putative S-adenosyl-L 99.6 7.8E-14 1.7E-18 145.5 19.0 171 523-718 37-210 (255)
10 PF08241 Methyltransf_11: Meth 99.6 2.1E-14 4.6E-19 124.1 10.7 94 536-648 1-95 (95)
11 PF13489 Methyltransf_23: Meth 99.5 3.6E-14 7.9E-19 134.6 12.3 136 529-712 20-159 (161)
12 PF12847 Methyltransf_18: Meth 99.5 6.4E-14 1.4E-18 126.3 13.2 108 531-651 1-112 (112)
13 PTZ00098 phosphoethanolamine N 99.5 1.2E-13 2.5E-18 145.6 16.5 127 510-652 31-158 (263)
14 TIGR02021 BchM-ChlM magnesium 99.5 3.4E-13 7.5E-18 137.1 19.0 158 523-714 45-204 (219)
15 PRK14103 trans-aconitate 2-met 99.5 2.8E-13 6E-18 141.2 16.7 107 523-652 21-128 (255)
16 PF13847 Methyltransf_31: Meth 99.5 1E-13 2.2E-18 133.3 11.9 107 531-652 3-112 (152)
17 PRK11088 rrmA 23S rRNA methylt 99.5 1.8E-13 3.9E-18 144.3 14.4 154 468-656 18-187 (272)
18 PLN02244 tocopherol O-methyltr 99.5 2.3E-13 5E-18 148.3 15.3 118 520-652 102-225 (340)
19 PRK10258 biotin biosynthesis p 99.5 6.1E-13 1.3E-17 137.9 17.6 119 515-655 26-145 (251)
20 PRK11207 tellurite resistance 99.5 2.2E-13 4.8E-18 137.4 13.9 110 523-648 22-132 (197)
21 TIGR02752 MenG_heptapren 2-hep 99.5 3.8E-13 8.2E-18 137.2 15.7 117 521-651 35-152 (231)
22 PLN02585 magnesium protoporphy 99.5 1.5E-12 3.2E-17 141.2 19.9 169 519-718 129-301 (315)
23 PRK15068 tRNA mo(5)U34 methylt 99.5 7E-13 1.5E-17 143.8 16.2 116 520-651 111-227 (322)
24 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.3E-13 1.4E-17 138.5 15.2 125 514-651 37-165 (247)
25 PF13649 Methyltransf_25: Meth 99.5 6.4E-14 1.4E-18 125.7 6.1 97 535-644 1-100 (101)
26 TIGR00477 tehB tellurite resis 99.5 1.1E-12 2.4E-17 132.2 15.4 110 522-648 21-131 (195)
27 PF02353 CMAS: Mycolic acid cy 99.4 9E-13 1.9E-17 140.2 13.9 120 515-650 46-166 (273)
28 PRK06202 hypothetical protein; 99.4 2.2E-12 4.8E-17 132.5 15.8 110 529-654 58-170 (232)
29 TIGR00740 methyltransferase, p 99.4 1.7E-12 3.6E-17 134.0 14.8 126 514-652 34-163 (239)
30 PRK12335 tellurite resistance 99.4 2.2E-12 4.9E-17 137.2 15.8 105 530-651 119-224 (287)
31 PF07021 MetW: Methionine bios 99.4 1.9E-12 4.1E-17 130.8 14.3 153 520-712 4-163 (193)
32 PLN02336 phosphoethanolamine N 99.4 2.2E-12 4.9E-17 145.7 15.5 115 521-652 256-371 (475)
33 TIGR00452 methyltransferase, p 99.4 3.3E-12 7.1E-17 138.4 15.9 117 520-652 110-227 (314)
34 PRK08317 hypothetical protein; 99.4 3.3E-12 7.2E-17 128.5 14.9 123 515-652 3-126 (241)
35 TIGR01983 UbiG ubiquinone bios 99.4 1.1E-11 2.5E-16 125.4 18.7 175 515-718 25-206 (224)
36 TIGR03587 Pse_Me-ase pseudamin 99.4 2.5E-12 5.4E-17 131.1 13.9 117 514-650 25-142 (204)
37 PRK07580 Mg-protoporphyrin IX 99.4 1.2E-11 2.7E-16 125.4 18.9 115 521-652 50-167 (230)
38 PRK01683 trans-aconitate 2-met 99.4 2E-12 4.4E-17 134.3 13.2 111 522-653 22-133 (258)
39 PRK05785 hypothetical protein; 99.4 2.4E-12 5.2E-17 133.0 12.8 99 531-653 51-151 (226)
40 COG2230 Cfa Cyclopropane fatty 99.4 2.9E-12 6.4E-17 136.4 13.6 117 516-648 57-174 (283)
41 COG2519 GCD14 tRNA(1-methylade 99.4 2E-12 4.4E-17 135.1 11.5 188 413-654 9-199 (256)
42 TIGR02081 metW methionine bios 99.4 1.2E-11 2.5E-16 124.0 16.2 158 521-713 5-164 (194)
43 PRK05134 bifunctional 3-demeth 99.4 2E-11 4.4E-16 124.9 18.0 175 514-718 31-208 (233)
44 PF05401 NodS: Nodulation prot 99.4 5.3E-12 1.1E-16 128.0 13.0 124 511-652 21-148 (201)
45 TIGR02072 BioC biotin biosynth 99.4 5.4E-12 1.2E-16 127.3 12.8 107 530-655 33-140 (240)
46 TIGR02469 CbiT precorrin-6Y C5 99.3 1.7E-11 3.6E-16 111.7 13.4 113 520-650 8-122 (124)
47 smart00828 PKS_MT Methyltransf 99.3 2.1E-11 4.5E-16 123.9 15.4 105 533-652 1-106 (224)
48 PF03848 TehB: Tellurite resis 99.3 8.7E-12 1.9E-16 126.5 12.5 111 523-650 22-133 (192)
49 PRK11873 arsM arsenite S-adeno 99.3 1.1E-11 2.3E-16 130.2 12.9 109 528-650 74-183 (272)
50 PRK11705 cyclopropane fatty ac 99.3 2.1E-11 4.5E-16 135.4 14.7 115 517-651 153-268 (383)
51 PRK13944 protein-L-isoaspartat 99.3 3.3E-11 7.2E-16 122.4 14.8 113 520-651 61-174 (205)
52 PF08242 Methyltransf_12: Meth 99.3 5.6E-13 1.2E-17 118.7 1.4 95 536-645 1-97 (99)
53 PLN02490 MPBQ/MSBQ methyltrans 99.3 3.8E-11 8.3E-16 131.4 15.8 103 531-651 113-216 (340)
54 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.8E-11 6.1E-16 124.4 13.7 118 531-651 34-153 (213)
55 TIGR00080 pimt protein-L-isoas 99.3 4.2E-11 9E-16 122.2 14.2 113 518-650 64-177 (215)
56 KOG1540 Ubiquinone biosynthesi 99.3 4.8E-11 1E-15 124.6 14.8 120 520-650 89-214 (296)
57 PRK13942 protein-L-isoaspartat 99.3 4.6E-11 1E-15 122.2 14.2 114 517-650 62-176 (212)
58 PRK00121 trmB tRNA (guanine-N( 99.3 1.2E-11 2.7E-16 125.4 9.4 129 513-656 24-162 (202)
59 smart00138 MeTrc Methyltransfe 99.3 3E-11 6.4E-16 127.8 12.6 119 531-649 99-241 (264)
60 TIGR00138 gidB 16S rRNA methyl 99.2 6.8E-11 1.5E-15 118.5 13.3 101 531-651 42-143 (181)
61 KOG1271 Methyltransferases [Ge 99.2 2E-11 4.4E-16 122.0 8.9 168 480-662 13-193 (227)
62 PLN02336 phosphoethanolamine N 99.2 5E-11 1.1E-15 134.8 13.3 111 521-648 27-140 (475)
63 COG4106 Tam Trans-aconitate me 99.2 2.1E-11 4.5E-16 124.8 8.3 110 523-653 22-132 (257)
64 PF08003 Methyltransf_9: Prote 99.2 2.4E-10 5.2E-15 122.6 15.5 165 519-718 103-270 (315)
65 PRK00107 gidB 16S rRNA methylt 99.2 1.9E-10 4.1E-15 116.2 13.9 98 532-649 46-144 (187)
66 PRK00216 ubiE ubiquinone/menaq 99.2 2.4E-10 5.1E-15 115.8 14.5 115 523-650 43-158 (239)
67 PRK08287 cobalt-precorrin-6Y C 99.2 2.5E-10 5.4E-15 113.7 13.7 114 517-650 17-131 (187)
68 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 3.8E-10 8.3E-15 113.1 14.7 113 522-650 30-143 (223)
69 PRK06922 hypothetical protein; 99.2 1.6E-10 3.4E-15 134.6 13.4 109 528-650 415-537 (677)
70 PRK13255 thiopurine S-methyltr 99.2 2.8E-10 6.2E-15 117.4 13.8 115 530-649 36-154 (218)
71 PF05175 MTS: Methyltransferas 99.2 7.1E-10 1.5E-14 109.5 15.2 127 518-658 18-149 (170)
72 PLN03075 nicotianamine synthas 99.1 5E-10 1.1E-14 120.4 14.9 110 530-651 122-234 (296)
73 PRK00312 pcm protein-L-isoaspa 99.1 6.2E-10 1.3E-14 113.0 13.8 108 521-651 68-176 (212)
74 TIGR00537 hemK_rel_arch HemK-r 99.1 6.3E-10 1.4E-14 110.1 13.2 112 523-652 11-142 (179)
75 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.6E-10 5.7E-15 114.8 10.5 114 531-657 16-139 (194)
76 TIGR02716 C20_methyl_CrtF C-20 99.1 8.1E-10 1.7E-14 118.4 14.4 114 522-650 140-254 (306)
77 COG2518 Pcm Protein-L-isoaspar 99.1 9.2E-10 2E-14 112.9 13.7 145 461-651 25-170 (209)
78 KOG4300 Predicted methyltransf 99.0 1.7E-09 3.7E-14 110.3 12.6 110 526-651 71-183 (252)
79 PF13659 Methyltransf_26: Meth 99.0 6.1E-10 1.3E-14 101.4 8.5 108 532-652 1-117 (117)
80 PF01135 PCMT: Protein-L-isoas 99.0 7.2E-10 1.6E-14 113.9 9.8 115 517-651 58-173 (209)
81 TIGR03438 probable methyltrans 99.0 2.3E-09 5E-14 115.3 14.0 109 531-650 63-177 (301)
82 PRK07402 precorrin-6B methylas 99.0 3.1E-09 6.6E-14 106.8 13.8 114 521-653 30-145 (196)
83 PRK15001 SAM-dependent 23S rib 99.0 3.7E-09 7.9E-14 117.5 15.6 117 522-649 219-339 (378)
84 TIGR01177 conserved hypothetic 99.0 2.4E-09 5.2E-14 116.4 13.6 124 515-653 166-297 (329)
85 PRK00377 cbiT cobalt-precorrin 99.0 2.6E-09 5.7E-14 107.7 12.6 113 524-652 33-147 (198)
86 TIGR03534 RF_mod_PrmC protein- 99.0 5.8E-09 1.3E-13 107.2 15.0 120 517-651 74-218 (251)
87 PRK13943 protein-L-isoaspartat 99.0 3.5E-09 7.5E-14 115.4 13.2 110 520-649 69-179 (322)
88 PRK09489 rsmC 16S ribosomal RN 99.0 5.6E-09 1.2E-13 114.7 14.4 113 522-650 187-303 (342)
89 PRK04266 fibrillarin; Provisio 99.0 5.7E-09 1.2E-13 108.4 13.3 107 526-652 67-178 (226)
90 PRK14121 tRNA (guanine-N(7)-)- 99.0 4.2E-09 9.1E-14 117.1 12.9 122 523-657 114-242 (390)
91 PRK14967 putative methyltransf 98.9 1.2E-08 2.6E-13 104.8 14.5 117 528-660 33-170 (223)
92 PRK14968 putative methyltransf 98.9 2.1E-08 4.6E-13 98.3 15.0 115 523-651 15-149 (188)
93 cd02440 AdoMet_MTases S-adenos 98.9 1.4E-08 3E-13 86.4 11.9 101 534-649 1-103 (107)
94 TIGR03533 L3_gln_methyl protei 98.9 2.1E-08 4.5E-13 107.3 15.5 110 530-652 120-253 (284)
95 TIGR00406 prmA ribosomal prote 98.9 1.3E-08 2.7E-13 109.0 13.7 102 531-652 159-261 (288)
96 PRK14901 16S rRNA methyltransf 98.9 4.9E-08 1.1E-12 110.2 18.6 119 522-652 243-386 (434)
97 PRK13256 thiopurine S-methyltr 98.9 1.7E-08 3.7E-13 105.1 13.7 116 530-648 42-161 (226)
98 TIGR00536 hemK_fam HemK family 98.9 2.4E-08 5.3E-13 106.4 15.2 108 533-653 116-247 (284)
99 PRK11188 rrmJ 23S rRNA methylt 98.9 1.5E-08 3.2E-13 103.8 13.0 107 530-659 50-175 (209)
100 KOG1541 Predicted protein carb 98.9 9.4E-09 2E-13 105.8 10.8 114 515-648 32-158 (270)
101 PRK00517 prmA ribosomal protei 98.9 1.6E-08 3.5E-13 105.9 12.4 94 530-650 118-213 (250)
102 PRK09328 N5-glutamine S-adenos 98.9 3.2E-08 7E-13 103.5 14.1 114 522-649 99-237 (275)
103 COG2264 PrmA Ribosomal protein 98.9 1.6E-08 3.4E-13 109.0 11.8 102 531-652 162-265 (300)
104 KOG2899 Predicted methyltransf 98.8 3.2E-08 7E-13 103.1 13.3 195 530-744 57-285 (288)
105 PRK11805 N5-glutamine S-adenos 98.8 5.7E-08 1.2E-12 105.2 15.0 108 532-652 134-265 (307)
106 PF03291 Pox_MCEL: mRNA cappin 98.8 2.5E-08 5.4E-13 109.2 12.0 120 531-654 62-190 (331)
107 KOG3010 Methyltransferase [Gen 98.8 5.6E-09 1.2E-13 108.7 6.5 108 520-644 21-129 (261)
108 smart00650 rADc Ribosomal RNA 98.8 3.1E-08 6.8E-13 97.4 11.5 88 521-626 3-90 (169)
109 PRK14904 16S rRNA methyltransf 98.8 3E-08 6.6E-13 112.1 12.6 118 523-653 242-380 (445)
110 PLN02781 Probable caffeoyl-CoA 98.8 8E-08 1.7E-12 100.2 14.5 163 520-718 57-225 (234)
111 COG2242 CobL Precorrin-6B meth 98.8 8.4E-08 1.8E-12 97.0 13.6 112 521-651 24-136 (187)
112 PF05724 TPMT: Thiopurine S-me 98.8 2.2E-08 4.7E-13 103.6 9.7 113 527-644 33-148 (218)
113 TIGR00446 nop2p NOL1/NOP2/sun 98.8 5.6E-08 1.2E-12 102.8 12.9 116 525-652 65-201 (264)
114 PRK10901 16S rRNA methyltransf 98.8 2.8E-07 6.1E-12 103.9 18.6 117 522-652 235-374 (427)
115 PRK14903 16S rRNA methyltransf 98.7 8.1E-08 1.8E-12 108.5 13.7 120 522-653 228-369 (431)
116 TIGR03704 PrmC_rel_meth putati 98.7 1.6E-07 3.5E-12 98.9 14.6 129 514-658 68-224 (251)
117 PTZ00146 fibrillarin; Provisio 98.7 9.2E-08 2E-12 102.9 12.7 104 528-649 129-236 (293)
118 PRK00811 spermidine synthase; 98.7 1.1E-07 2.4E-12 101.7 13.0 111 530-648 75-188 (283)
119 COG4976 Predicted methyltransf 98.7 5E-09 1.1E-13 108.3 2.5 108 523-652 117-227 (287)
120 PHA03411 putative methyltransf 98.7 1.9E-07 4.1E-12 99.8 14.4 80 530-628 63-142 (279)
121 TIGR00563 rsmB ribosomal RNA s 98.7 1.7E-07 3.6E-12 105.6 14.5 119 522-653 229-371 (426)
122 KOG1975 mRNA cap methyltransfe 98.7 5.9E-08 1.3E-12 104.6 10.1 141 507-655 89-242 (389)
123 PRK14902 16S rRNA methyltransf 98.7 9E-08 1.9E-12 108.2 12.3 119 522-652 241-381 (444)
124 COG4123 Predicted O-methyltran 98.7 9.7E-08 2.1E-12 100.6 11.3 125 523-659 36-179 (248)
125 PRK03522 rumB 23S rRNA methylu 98.7 1.2E-07 2.6E-12 102.7 12.3 88 517-619 159-247 (315)
126 PF06325 PrmA: Ribosomal prote 98.7 7.4E-08 1.6E-12 104.0 10.5 100 530-651 160-260 (295)
127 COG2813 RsmC 16S RNA G1207 met 98.7 2.1E-07 4.6E-12 100.2 13.8 109 521-644 148-259 (300)
128 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.6E-07 3.4E-12 106.3 13.5 115 515-650 281-400 (443)
129 TIGR00438 rrmJ cell division p 98.7 1.4E-07 2.9E-12 94.3 10.8 100 528-650 29-146 (188)
130 PRK14966 unknown domain/N5-glu 98.6 3.7E-07 7.9E-12 102.6 15.0 90 514-619 236-326 (423)
131 PRK15128 23S rRNA m(5)C1962 me 98.6 4.9E-07 1.1E-11 101.3 15.1 143 531-723 220-376 (396)
132 PF05891 Methyltransf_PK: AdoM 98.6 3.2E-07 7E-12 94.8 12.6 147 531-717 55-202 (218)
133 PLN02232 ubiquinone biosynthes 98.6 1.6E-07 3.5E-12 92.1 9.3 81 560-651 1-82 (160)
134 PRK04457 spermidine synthase; 98.6 3.4E-07 7.3E-12 97.1 12.0 109 530-650 65-177 (262)
135 PHA03412 putative methyltransf 98.6 5.7E-07 1.2E-11 94.4 12.7 118 509-648 31-160 (241)
136 PF01596 Methyltransf_3: O-met 98.6 7.3E-07 1.6E-11 91.7 13.3 163 515-718 29-197 (205)
137 PLN02366 spermidine synthase 98.5 8.8E-07 1.9E-11 96.3 13.5 110 530-648 90-203 (308)
138 PRK01544 bifunctional N5-gluta 98.5 9.7E-07 2.1E-11 101.8 14.4 108 531-651 138-270 (506)
139 PF08704 GCD14: tRNA methyltra 98.5 3.5E-07 7.5E-12 96.6 9.8 125 512-654 21-150 (247)
140 TIGR00417 speE spermidine synt 98.5 1.2E-06 2.6E-11 93.0 13.5 111 530-649 71-185 (270)
141 PF00891 Methyltransf_2: O-met 98.5 7.1E-07 1.5E-11 92.3 11.5 104 523-649 92-198 (241)
142 PF06080 DUF938: Protein of un 98.5 2.2E-06 4.9E-11 88.0 14.2 160 534-735 28-204 (204)
143 PRK00274 ksgA 16S ribosomal RN 98.5 4.8E-07 1E-11 96.2 9.6 82 520-619 31-112 (272)
144 PLN02476 O-methyltransferase 98.5 3.6E-06 7.7E-11 90.4 16.2 159 519-718 106-270 (278)
145 PRK01581 speE spermidine synth 98.5 9.6E-07 2.1E-11 97.7 11.9 114 529-650 148-267 (374)
146 PRK14896 ksgA 16S ribosomal RN 98.5 7.6E-07 1.7E-11 93.9 10.6 84 520-622 18-101 (258)
147 TIGR00479 rumA 23S rRNA (uraci 98.5 1.3E-06 2.8E-11 98.3 12.9 114 516-649 277-395 (431)
148 COG2263 Predicted RNA methylas 98.4 8.5E-07 1.8E-11 89.9 9.9 77 525-619 39-115 (198)
149 PRK10909 rsmD 16S rRNA m(2)G96 98.4 1.9E-06 4.1E-11 88.3 12.3 115 521-652 42-161 (199)
150 KOG2361 Predicted methyltransf 98.4 4.9E-07 1.1E-11 94.5 7.6 172 533-740 73-251 (264)
151 TIGR02085 meth_trns_rumB 23S r 98.4 2.1E-06 4.6E-11 95.3 13.3 111 520-650 222-334 (374)
152 PF01170 UPF0020: Putative RNA 98.4 2.7E-06 6E-11 85.3 11.6 137 513-660 10-160 (179)
153 COG2890 HemK Methylase of poly 98.4 1.3E-06 2.9E-11 93.6 9.8 71 534-619 113-183 (280)
154 PRK03612 spermidine synthase; 98.4 2.2E-06 4.7E-11 99.2 11.8 113 530-650 296-415 (521)
155 TIGR00755 ksgA dimethyladenosi 98.3 3.5E-06 7.6E-11 88.4 12.1 82 519-619 17-101 (253)
156 PTZ00338 dimethyladenosine tra 98.3 2.3E-06 5.1E-11 92.4 10.4 85 520-620 25-109 (294)
157 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.9E-06 4.1E-11 103.0 10.3 104 531-650 538-656 (702)
158 PF01739 CheR: CheR methyltran 98.3 2.6E-06 5.6E-11 87.1 9.9 122 531-652 31-176 (196)
159 PLN02589 caffeoyl-CoA O-methyl 98.3 1.1E-05 2.3E-10 85.4 14.1 116 518-649 66-188 (247)
160 PRK10611 chemotaxis methyltran 98.3 3.3E-06 7.2E-11 91.0 9.7 118 532-649 116-261 (287)
161 COG4122 Predicted O-methyltran 98.2 8E-06 1.7E-10 84.9 11.8 117 517-649 45-164 (219)
162 TIGR02143 trmA_only tRNA (urac 98.2 2.9E-06 6.3E-11 93.7 8.8 77 514-606 181-257 (353)
163 TIGR00478 tly hemolysin TlyA f 98.2 7.4E-06 1.6E-10 85.7 11.2 106 520-654 63-176 (228)
164 PLN02672 methionine S-methyltr 98.2 5.7E-06 1.2E-10 102.2 12.1 87 532-619 119-210 (1082)
165 PF05219 DREV: DREV methyltran 98.2 7.2E-06 1.6E-10 86.9 11.1 92 531-648 94-186 (265)
166 PF02390 Methyltransf_4: Putat 98.2 4.1E-06 8.9E-11 85.3 9.0 114 533-659 19-142 (195)
167 COG1041 Predicted DNA modifica 98.2 8.7E-06 1.9E-10 89.4 11.7 128 509-651 174-311 (347)
168 PRK04148 hypothetical protein; 98.2 1.2E-05 2.6E-10 77.8 11.0 80 521-622 6-87 (134)
169 PRK05031 tRNA (uracil-5-)-meth 98.2 5.5E-06 1.2E-10 91.8 9.2 75 515-605 191-265 (362)
170 PF10294 Methyltransf_16: Puta 98.1 1.9E-05 4.1E-10 78.8 11.6 126 514-652 22-158 (173)
171 KOG1499 Protein arginine N-met 98.0 2E-05 4.2E-10 86.4 9.9 109 528-651 57-167 (346)
172 PRK11727 23S rRNA mA1618 methy 98.0 1.7E-05 3.8E-10 86.8 9.5 81 531-622 114-199 (321)
173 PF08123 DOT1: Histone methyla 98.0 2E-05 4.3E-10 81.3 8.9 133 513-652 24-159 (205)
174 KOG3420 Predicted RNA methylas 98.0 9.5E-06 2.1E-10 79.4 6.0 94 514-622 31-124 (185)
175 COG2265 TrmA SAM-dependent met 98.0 3.5E-05 7.5E-10 87.6 11.5 116 514-652 276-398 (432)
176 COG0220 Predicted S-adenosylme 98.0 3.6E-05 7.8E-10 80.6 10.1 119 527-658 44-172 (227)
177 COG1352 CheR Methylase of chem 98.0 4.6E-05 1E-09 81.6 11.1 119 531-649 96-240 (268)
178 PF12147 Methyltransf_20: Puta 98.0 0.0003 6.6E-09 75.9 17.0 110 530-651 134-249 (311)
179 PRK00050 16S rRNA m(4)C1402 me 97.9 1.6E-05 3.5E-10 86.1 7.4 86 520-619 8-97 (296)
180 PF09243 Rsm22: Mitochondrial 97.9 6.1E-05 1.3E-09 80.6 11.0 113 528-653 30-142 (274)
181 PF05958 tRNA_U5-meth_tr: tRNA 97.9 2.9E-05 6.3E-10 85.8 8.8 77 514-606 180-256 (352)
182 COG0500 SmtA SAM-dependent met 97.9 0.00015 3.3E-09 62.6 11.5 104 535-654 52-159 (257)
183 PRK11933 yebU rRNA (cytosine-C 97.9 0.00057 1.2E-08 78.6 19.3 114 528-653 110-245 (470)
184 KOG1661 Protein-L-isoaspartate 97.9 6.2E-05 1.3E-09 77.7 10.1 126 514-651 67-194 (237)
185 PLN02823 spermine synthase 97.9 0.0001 2.2E-09 81.3 12.4 106 531-648 103-217 (336)
186 PRK04338 N(2),N(2)-dimethylgua 97.9 5.6E-05 1.2E-09 84.6 10.1 110 522-650 47-158 (382)
187 TIGR00095 RNA methyltransferas 97.9 0.00024 5.2E-09 72.1 13.7 108 530-652 48-161 (189)
188 COG3963 Phospholipid N-methylt 97.9 0.00013 2.9E-09 73.0 11.3 106 522-644 39-149 (194)
189 KOG2940 Predicted methyltransf 97.8 2.3E-05 5.1E-10 81.6 6.1 101 531-649 72-172 (325)
190 PF05185 PRMT5: PRMT5 arginine 97.8 0.00014 3.1E-09 83.0 12.7 105 532-648 187-294 (448)
191 TIGR03439 methyl_EasF probable 97.8 0.00022 4.8E-09 78.2 13.5 108 531-650 76-197 (319)
192 COG0030 KsgA Dimethyladenosine 97.8 8.1E-05 1.8E-09 79.3 9.7 83 520-619 19-102 (259)
193 PF03141 Methyltransf_29: Puta 97.8 1.7E-05 3.6E-10 90.4 3.9 101 531-652 117-221 (506)
194 PF05148 Methyltransf_8: Hypot 97.7 8.8E-05 1.9E-09 76.7 8.3 99 520-652 60-160 (219)
195 PF02475 Met_10: Met-10+ like- 97.7 0.00013 2.7E-09 75.1 9.3 117 507-645 80-196 (200)
196 PF09445 Methyltransf_15: RNA 97.7 0.00024 5.2E-09 71.0 10.2 112 533-659 1-129 (163)
197 KOG3178 Hydroxyindole-O-methyl 97.7 0.00021 4.6E-09 78.5 10.5 95 532-649 178-274 (342)
198 PRK00536 speE spermidine synth 97.7 0.00035 7.6E-09 74.7 11.7 100 529-649 70-169 (262)
199 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00039 8.6E-09 83.5 13.2 138 511-659 169-356 (702)
200 COG0421 SpeE Spermidine syntha 97.6 0.00035 7.6E-09 75.4 11.5 110 531-650 76-189 (282)
201 PF13679 Methyltransf_32: Meth 97.6 0.00049 1.1E-08 66.3 11.0 86 530-627 24-114 (141)
202 PRK01544 bifunctional N5-gluta 97.6 0.00022 4.7E-09 82.7 9.6 115 531-658 347-470 (506)
203 KOG1500 Protein arginine N-met 97.6 0.00039 8.4E-09 75.9 10.5 101 529-645 175-276 (517)
204 KOG2904 Predicted methyltransf 97.6 0.00035 7.6E-09 74.7 9.8 93 515-619 129-229 (328)
205 KOG3045 Predicted RNA methylas 97.5 0.00032 7E-09 74.5 9.1 99 522-656 170-270 (325)
206 KOG1331 Predicted methyltransf 97.5 0.00012 2.6E-09 78.5 5.9 96 531-649 45-142 (293)
207 PF01564 Spermine_synth: Sperm 97.5 0.00067 1.5E-08 71.7 11.1 111 530-649 75-190 (246)
208 PF07942 N2227: N2227-like pro 97.5 0.0035 7.6E-08 67.4 16.4 156 530-716 55-242 (270)
209 COG1092 Predicted SAM-dependen 97.5 0.0017 3.8E-08 73.1 14.3 109 531-652 217-338 (393)
210 KOG2915 tRNA(1-methyladenosine 97.4 0.0011 2.5E-08 70.8 11.2 164 462-653 46-213 (314)
211 KOG0820 Ribosomal RNA adenine 97.4 0.00074 1.6E-08 72.3 9.5 83 521-619 48-130 (315)
212 KOG1269 SAM-dependent methyltr 97.4 0.00038 8.2E-09 77.6 7.5 104 530-648 109-212 (364)
213 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.0012 2.7E-08 70.9 10.8 131 510-652 27-185 (311)
214 COG4076 Predicted RNA methylas 97.3 0.00044 9.5E-09 70.5 6.3 109 519-644 20-128 (252)
215 COG0116 Predicted N6-adenine-s 97.3 0.0023 5E-08 71.6 12.4 134 508-652 168-346 (381)
216 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0011 2.5E-08 70.2 9.6 114 517-652 16-134 (262)
217 COG2520 Predicted methyltransf 97.3 0.0017 3.6E-08 71.9 10.9 119 508-648 168-287 (341)
218 KOG1663 O-methyltransferase [S 97.2 0.0033 7.3E-08 65.9 12.3 116 517-648 59-180 (237)
219 PF04672 Methyltransf_19: S-ad 97.2 0.0018 4E-08 69.4 10.4 114 531-656 68-196 (267)
220 TIGR00308 TRM1 tRNA(guanine-26 97.2 0.0028 6E-08 71.1 12.2 100 533-650 46-147 (374)
221 KOG3191 Predicted N6-DNA-methy 97.2 0.0019 4.1E-08 65.8 9.6 79 527-619 39-117 (209)
222 PF02527 GidB: rRNA small subu 97.2 0.0015 3.2E-08 66.4 8.9 92 534-645 51-142 (184)
223 KOG3987 Uncharacterized conser 97.2 0.00012 2.6E-09 75.5 0.9 87 531-643 112-198 (288)
224 COG4627 Uncharacterized protei 97.2 0.00019 4.1E-09 71.2 2.2 102 596-712 31-134 (185)
225 PRK11760 putative 23S rRNA C24 97.1 0.0038 8.2E-08 69.1 11.9 87 530-644 210-296 (357)
226 COG0293 FtsJ 23S rRNA methylas 97.1 0.0033 7.2E-08 65.1 10.1 109 530-661 44-171 (205)
227 PF03059 NAS: Nicotianamine sy 97.1 0.0049 1.1E-07 66.5 11.8 110 531-651 120-231 (276)
228 PF10672 Methyltrans_SAM: S-ad 97.0 0.0076 1.6E-07 65.4 12.9 107 531-650 123-238 (286)
229 TIGR02987 met_A_Alw26 type II 97.0 0.0045 9.7E-08 71.9 11.8 47 531-577 31-84 (524)
230 COG2521 Predicted archaeal met 96.9 0.0015 3.1E-08 68.8 6.3 147 489-652 88-247 (287)
231 KOG2187 tRNA uracil-5-methyltr 96.9 0.004 8.6E-08 71.6 9.6 78 514-606 366-443 (534)
232 PF03602 Cons_hypoth95: Conser 96.9 0.0057 1.2E-07 62.0 9.7 117 522-653 31-156 (183)
233 PF01728 FtsJ: FtsJ-like methy 96.9 0.0016 3.4E-08 64.7 5.6 37 531-567 23-59 (181)
234 TIGR01444 fkbM_fam methyltrans 96.9 0.0025 5.3E-08 60.3 6.6 43 534-577 1-43 (143)
235 COG3897 Predicted methyltransf 96.7 0.0055 1.2E-07 63.1 7.8 107 530-656 78-185 (218)
236 COG0357 GidB Predicted S-adeno 96.6 0.008 1.7E-07 62.7 8.5 91 532-644 68-161 (215)
237 PF11968 DUF3321: Putative met 96.6 0.0077 1.7E-07 62.8 8.2 89 533-652 53-151 (219)
238 COG0144 Sun tRNA and rRNA cyto 96.6 0.033 7.2E-07 62.1 13.7 120 522-653 147-291 (355)
239 PF04816 DUF633: Family of unk 96.5 0.02 4.3E-07 59.3 11.1 102 535-653 1-103 (205)
240 PF07091 FmrO: Ribosomal RNA m 96.3 0.0096 2.1E-07 63.4 7.5 108 531-654 105-212 (251)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.3 0.018 3.9E-07 62.2 9.6 119 522-652 76-221 (283)
242 TIGR00006 S-adenosyl-methyltra 96.3 0.011 2.3E-07 64.8 7.6 86 519-618 8-98 (305)
243 COG2384 Predicted SAM-dependen 96.2 0.027 5.8E-07 59.0 9.7 118 517-652 4-121 (226)
244 KOG2352 Predicted spermine/spe 96.2 0.021 4.5E-07 65.6 9.6 103 533-650 50-162 (482)
245 COG0742 N6-adenine-specific me 96.2 0.088 1.9E-06 54.0 13.1 119 521-653 31-157 (187)
246 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.11 2.3E-06 55.8 12.6 119 530-652 55-202 (256)
247 COG4262 Predicted spermidine s 95.5 0.074 1.6E-06 59.4 9.8 108 531-648 289-405 (508)
248 COG1189 Predicted rRNA methyla 95.2 0.12 2.6E-06 54.8 9.9 110 521-654 68-183 (245)
249 PF01269 Fibrillarin: Fibrilla 95.1 0.1 2.2E-06 54.9 9.0 101 528-650 70-178 (229)
250 PF05971 Methyltransf_10: Prot 94.9 0.13 2.8E-06 56.4 9.4 101 514-626 77-191 (299)
251 KOG3115 Methyltransferase-like 94.7 0.13 2.8E-06 53.6 8.4 68 532-605 61-128 (249)
252 KOG3201 Uncharacterized conser 94.7 0.04 8.7E-07 55.5 4.5 120 522-653 20-143 (201)
253 PRK10742 putative methyltransf 94.5 0.21 4.5E-06 53.5 9.7 108 508-624 57-176 (250)
254 PF13578 Methyltransf_24: Meth 94.1 0.025 5.4E-07 51.2 1.6 98 536-648 1-103 (106)
255 KOG1709 Guanidinoacetate methy 94.0 0.38 8.2E-06 50.7 10.1 100 530-646 100-201 (271)
256 PF03514 GRAS: GRAS domain fam 94.0 0.42 9E-06 53.8 11.3 126 521-656 100-249 (374)
257 COG0275 Predicted S-adenosylme 93.5 0.22 4.7E-06 54.6 7.7 86 520-618 12-102 (314)
258 KOG2730 Methylase [General fun 93.4 0.08 1.7E-06 55.7 4.0 62 531-606 94-155 (263)
259 PF04989 CmcI: Cephalosporin h 93.1 0.2 4.3E-06 52.2 6.3 112 527-652 28-149 (206)
260 PF01795 Methyltransf_5: MraW 92.9 0.22 4.7E-06 54.9 6.7 85 520-618 9-99 (310)
261 COG5459 Predicted rRNA methyla 92.9 0.22 4.9E-06 55.5 6.7 113 528-652 110-227 (484)
262 KOG2798 Putative trehalase [Ca 92.8 0.59 1.3E-05 51.6 9.7 155 531-714 150-335 (369)
263 cd00048 DSRM Double-stranded R 92.8 0.14 3.1E-06 41.8 4.0 67 213-316 2-68 (68)
264 KOG4058 Uncharacterized conser 92.7 0.22 4.8E-06 49.6 5.7 90 514-616 55-144 (199)
265 PF00254 FKBP_C: FKBP-type pep 92.6 0.12 2.7E-06 45.8 3.6 88 398-496 4-94 (94)
266 COG4301 Uncharacterized conser 92.5 1.4 3E-05 47.5 11.5 136 506-653 47-196 (321)
267 smart00358 DSRM Double-strande 92.1 0.22 4.9E-06 40.8 4.3 66 213-316 1-66 (67)
268 PF14709 DND1_DSRM: double str 91.9 0.33 7.1E-06 43.2 5.3 75 212-316 2-79 (80)
269 KOG0544 FKBP-type peptidyl-pro 91.9 0.35 7.6E-06 44.7 5.5 68 389-459 7-76 (108)
270 TIGR03516 ppisom_GldI peptidyl 91.7 0.32 6.8E-06 49.4 5.7 124 361-498 48-175 (177)
271 PF11599 AviRa: RRNA methyltra 91.4 0.27 5.8E-06 51.7 4.8 142 511-652 31-216 (246)
272 PF02636 Methyltransf_28: Puta 90.9 0.72 1.6E-05 48.7 7.6 84 532-626 19-109 (252)
273 PF01555 N6_N4_Mtase: DNA meth 90.2 0.7 1.5E-05 46.3 6.6 60 511-574 172-231 (231)
274 PF02005 TRM: N2,N2-dimethylgu 90.2 0.59 1.3E-05 52.8 6.6 126 508-651 18-155 (377)
275 KOG1562 Spermidine synthase [A 89.8 1 2.2E-05 49.5 7.5 112 528-648 118-233 (337)
276 COG4798 Predicted methyltransf 89.6 0.82 1.8E-05 47.6 6.4 115 524-650 41-166 (238)
277 TIGR00027 mthyl_TIGR00027 meth 89.0 25 0.00054 37.8 17.5 155 531-714 81-248 (260)
278 PF07757 AdoMet_MTase: Predict 88.9 0.37 7.9E-06 45.6 3.1 33 530-565 57-89 (112)
279 PF04445 SAM_MT: Putative SAM- 88.8 2.2 4.7E-05 45.5 9.1 108 510-624 45-163 (234)
280 cd00315 Cyt_C5_DNA_methylase C 88.3 0.97 2.1E-05 48.6 6.3 66 534-619 2-69 (275)
281 COG1889 NOP1 Fibrillarin-like 87.9 3.9 8.4E-05 43.0 10.0 104 528-650 73-180 (231)
282 PRK11524 putative methyltransf 87.9 1.5 3.2E-05 47.3 7.4 57 517-577 195-251 (284)
283 KOG4589 Cell division protein 87.7 0.58 1.3E-05 48.4 3.9 36 530-565 68-103 (232)
284 COG1867 TRM1 N2,N2-dimethylgua 87.7 1.7 3.7E-05 49.0 7.8 126 506-651 24-155 (380)
285 KOG1122 tRNA and rRNA cytosine 87.4 3.4 7.4E-05 47.4 10.0 115 526-652 236-373 (460)
286 PRK13699 putative methylase; P 86.1 2.3 5E-05 44.7 7.5 53 522-578 155-207 (227)
287 PF06962 rRNA_methylase: Putat 85.9 3.7 8E-05 40.5 8.3 73 558-644 1-85 (140)
288 PHA01634 hypothetical protein 85.7 3.2 6.9E-05 40.8 7.5 45 531-577 28-72 (156)
289 PF06859 Bin3: Bicoid-interact 85.2 0.36 7.9E-06 45.7 0.9 105 612-735 1-110 (110)
290 KOG1501 Arginine N-methyltrans 84.1 2 4.3E-05 49.4 6.1 43 533-577 68-110 (636)
291 KOG2793 Putative N2,N2-dimethy 83.4 6.1 0.00013 42.5 9.2 115 531-654 86-203 (248)
292 COG3315 O-Methyltransferase in 82.8 9.5 0.00021 41.9 10.6 124 515-651 73-210 (297)
293 COG3510 CmcI Cephalosporin hyd 82.5 5.7 0.00012 41.5 8.2 109 525-652 63-182 (237)
294 KOG2651 rRNA adenine N-6-methy 82.0 3.4 7.4E-05 46.9 6.8 54 519-574 140-194 (476)
295 PF00035 dsrm: Double-stranded 80.7 2.4 5.3E-05 34.8 4.1 67 213-316 1-67 (67)
296 KOG2671 Putative RNA methylase 78.7 1.4 3E-05 49.4 2.5 81 525-618 202-290 (421)
297 PF02254 TrkA_N: TrkA-N domain 78.5 5.3 0.00012 36.4 6.0 98 540-661 4-107 (116)
298 COG0286 HsdM Type I restrictio 78.4 5.2 0.00011 46.8 7.2 88 520-619 175-271 (489)
299 PRK10737 FKBP-type peptidyl-pr 77.8 2.2 4.8E-05 44.2 3.6 63 400-469 4-69 (196)
300 PF01861 DUF43: Protein of unk 77.5 26 0.00056 37.7 11.4 116 506-643 20-140 (243)
301 TIGR00675 dcm DNA-methyltransf 75.9 8.6 0.00019 42.3 7.7 65 535-619 1-66 (315)
302 PLN02668 indole-3-acetate carb 75.9 20 0.00043 41.0 10.7 94 532-626 64-176 (386)
303 COG1063 Tdh Threonine dehydrog 75.8 22 0.00049 39.5 11.0 125 505-654 143-274 (350)
304 PRK09424 pntA NAD(P) transhydr 75.2 20 0.00042 42.5 10.8 43 530-574 163-206 (509)
305 COG1064 AdhP Zn-dependent alco 74.7 10 0.00022 42.7 7.8 96 528-652 163-262 (339)
306 cd08283 FDH_like_1 Glutathione 74.2 17 0.00038 40.3 9.7 49 525-574 178-227 (386)
307 KOG1596 Fibrillarin and relate 73.2 17 0.00036 39.4 8.6 117 513-651 135-262 (317)
308 PRK15095 FKBP-type peptidyl-pr 72.4 4.2 9E-05 40.5 3.8 64 399-469 5-72 (156)
309 KOG2198 tRNA cytosine-5-methyl 72.2 27 0.00059 39.7 10.4 114 528-653 152-299 (375)
310 TIGR00561 pntA NAD(P) transhyd 71.6 12 0.00027 44.1 7.9 106 530-644 162-277 (511)
311 COG4017 Uncharacterized protei 71.2 18 0.0004 37.9 8.1 156 515-709 28-193 (254)
312 PF03141 Methyltransf_29: Puta 70.0 8.2 0.00018 45.3 6.0 114 515-648 345-465 (506)
313 KOG3924 Putative protein methy 68.3 14 0.00029 42.4 7.0 117 523-649 184-306 (419)
314 PF11312 DUF3115: Protein of u 67.1 13 0.00029 41.2 6.6 120 533-653 88-246 (315)
315 COG3129 Predicted SAM-dependen 65.8 12 0.00027 40.2 5.8 82 531-625 78-166 (292)
316 COG1565 Uncharacterized conser 64.8 14 0.0003 41.9 6.2 82 529-626 75-163 (370)
317 PF00145 DNA_methylase: C-5 cy 64.6 13 0.00028 39.6 5.8 65 534-619 2-68 (335)
318 PF04072 LCM: Leucine carboxyl 63.5 41 0.0009 33.8 8.9 95 532-637 79-182 (183)
319 PF03269 DUF268: Caenorhabditi 62.9 5.6 0.00012 40.5 2.5 44 610-654 61-115 (177)
320 PRK10458 DNA cytosine methylas 62.7 36 0.00078 39.9 9.4 61 514-576 64-130 (467)
321 PRK09880 L-idonate 5-dehydroge 61.9 49 0.0011 36.0 9.9 46 528-574 166-212 (343)
322 PF06690 DUF1188: Protein of u 61.3 88 0.0019 33.8 11.0 107 515-656 25-132 (252)
323 PRK07066 3-hydroxybutyryl-CoA 61.2 86 0.0019 34.9 11.6 160 532-711 7-179 (321)
324 PF07279 DUF1442: Protein of u 60.9 52 0.0011 35.0 9.2 86 521-618 31-121 (218)
325 KOG2539 Mitochondrial/chloropl 60.5 16 0.00034 42.7 5.8 111 529-648 198-313 (491)
326 PF11899 DUF3419: Protein of u 60.2 12 0.00025 42.7 4.8 60 592-651 273-335 (380)
327 KOG2920 Predicted methyltransf 58.3 7.5 0.00016 42.5 2.7 39 530-570 115-153 (282)
328 PF03492 Methyltransf_7: SAM d 58.1 34 0.00074 38.2 7.9 91 530-626 15-121 (334)
329 PRK07819 3-hydroxybutyryl-CoA 57.2 25 0.00054 38.1 6.5 106 533-649 6-119 (286)
330 cd08254 hydroxyacyl_CoA_DH 6-h 55.8 57 0.0012 34.6 8.9 45 528-574 162-207 (338)
331 COG1255 Uncharacterized protei 55.7 15 0.00033 35.5 4.0 64 530-619 12-77 (129)
332 PRK08293 3-hydroxybutyryl-CoA 55.4 99 0.0021 33.2 10.7 42 533-577 4-47 (287)
333 PRK07417 arogenate dehydrogena 54.1 82 0.0018 33.8 9.8 85 534-648 2-88 (279)
334 PF02737 3HCDH_N: 3-hydroxyacy 54.0 2.5E+02 0.0054 28.4 15.3 157 534-712 1-175 (180)
335 PRK01747 mnmC bifunctional tRN 53.8 45 0.00098 40.2 8.6 121 531-651 57-207 (662)
336 KOG1099 SAM-dependent methyltr 53.5 18 0.00039 38.9 4.5 94 532-648 42-160 (294)
337 PRK05808 3-hydroxybutyryl-CoA 51.9 88 0.0019 33.4 9.6 160 533-714 4-181 (282)
338 TIGR00872 gnd_rel 6-phosphoglu 51.5 58 0.0013 35.4 8.2 92 534-653 2-95 (298)
339 cd08230 glucose_DH Glucose deh 51.5 72 0.0016 34.8 9.0 44 529-574 170-217 (355)
340 PF03686 UPF0146: Uncharacteri 50.6 34 0.00074 33.4 5.5 93 530-654 12-106 (127)
341 PRK11570 peptidyl-prolyl cis-t 46.5 28 0.0006 36.4 4.6 68 395-471 113-184 (206)
342 cd08232 idonate-5-DH L-idonate 46.3 78 0.0017 33.9 8.2 44 530-574 164-208 (339)
343 PF05050 Methyltransf_21: Meth 45.4 28 0.00061 33.0 4.2 39 537-575 1-42 (167)
344 PLN02545 3-hydroxybutyryl-CoA 45.0 53 0.0012 35.3 6.6 42 533-577 5-48 (295)
345 COG1047 SlpA FKBP-type peptidy 44.8 22 0.00047 36.5 3.4 63 400-469 4-70 (174)
346 KOG1253 tRNA methyltransferase 44.5 18 0.00038 42.6 3.0 106 528-651 106-217 (525)
347 COG0270 Dcm Site-specific DNA 43.4 52 0.0011 36.4 6.3 69 532-619 3-74 (328)
348 PRK03562 glutathione-regulated 43.1 1.2E+02 0.0027 36.6 9.9 99 532-657 400-505 (621)
349 PRK11730 fadB multifunctional 42.5 2.2E+02 0.0047 35.2 12.0 162 533-714 314-491 (715)
350 PF11899 DUF3419: Protein of u 41.4 54 0.0012 37.5 6.2 45 525-572 29-73 (380)
351 COG2933 Predicted SAM-dependen 41.2 86 0.0019 34.6 7.3 88 529-644 209-296 (358)
352 KOG1098 Putative SAM-dependent 40.6 32 0.00068 41.6 4.3 37 530-566 43-79 (780)
353 PRK11154 fadJ multifunctional 40.6 2.2E+02 0.0047 35.2 11.6 162 532-713 309-487 (708)
354 TIGR02441 fa_ox_alpha_mit fatt 40.6 1.9E+02 0.004 36.0 11.0 163 532-714 335-513 (737)
355 KOG0552 FKBP-type peptidyl-pro 40.5 54 0.0012 35.0 5.6 108 379-498 116-225 (226)
356 PRK10902 FKBP-type peptidyl-pr 40.4 47 0.001 36.2 5.3 94 393-502 155-252 (269)
357 TIGR00518 alaDH alanine dehydr 40.4 52 0.0011 37.1 5.9 42 531-574 166-208 (370)
358 PF05206 TRM13: Methyltransfer 40.0 55 0.0012 35.5 5.7 37 530-566 17-57 (259)
359 KOG0822 Protein kinase inhibit 39.1 70 0.0015 38.3 6.6 104 532-648 368-475 (649)
360 COG5379 BtaA S-adenosylmethion 38.9 65 0.0014 36.0 6.0 59 594-652 307-368 (414)
361 COG5379 BtaA S-adenosylmethion 38.4 82 0.0018 35.2 6.7 49 526-577 58-106 (414)
362 TIGR02437 FadB fatty oxidation 36.6 3E+02 0.0065 34.0 11.9 163 531-713 312-490 (714)
363 PRK08217 fabG 3-ketoacyl-(acyl 36.2 1.2E+02 0.0026 30.7 7.3 75 531-621 4-91 (253)
364 COG0569 TrkA K+ transport syst 36.0 1E+02 0.0022 32.3 6.9 104 533-661 1-111 (225)
365 PF09263 PEX-2N: Peroxisome bi 35.2 25 0.00053 32.1 1.8 18 75-92 66-83 (87)
366 COG0287 TyrA Prephenate dehydr 35.0 97 0.0021 33.9 6.7 93 532-651 3-98 (279)
367 COG0863 DNA modification methy 34.7 1.3E+02 0.0027 32.0 7.5 48 528-578 219-266 (302)
368 cd01065 NAD_bind_Shikimate_DH 34.6 1.6E+02 0.0035 28.0 7.5 44 530-575 17-62 (155)
369 COG0686 Ald Alanine dehydrogen 34.4 1.5E+02 0.0033 33.5 8.0 99 531-649 167-266 (371)
370 PRK08306 dipicolinate synthase 34.3 1.1E+02 0.0024 33.5 7.1 87 531-648 151-238 (296)
371 KOG0024 Sorbitol dehydrogenase 33.5 72 0.0016 36.0 5.4 46 528-574 166-212 (354)
372 PF02086 MethyltransfD12: D12 33.5 68 0.0015 33.3 5.1 53 521-576 10-62 (260)
373 PF12242 Eno-Rase_NADH_b: NAD( 33.5 62 0.0013 29.2 4.0 49 517-565 24-73 (78)
374 cd05292 LDH_2 A subgroup of L- 32.7 6.9E+02 0.015 27.4 12.9 36 534-570 2-39 (308)
375 PRK03659 glutathione-regulated 32.1 79 0.0017 38.0 6.0 101 533-660 401-508 (601)
376 PRK07502 cyclohexadienyl dehyd 31.7 1.1E+02 0.0024 33.1 6.6 42 532-574 6-49 (307)
377 TIGR00497 hsdM type I restrict 30.9 4.7E+02 0.01 30.8 11.9 46 531-576 217-265 (501)
378 PRK09260 3-hydroxybutyryl-CoA 30.9 1.7E+02 0.0037 31.4 7.8 42 533-577 2-45 (288)
379 PRK12921 2-dehydropantoate 2-r 30.9 2.2E+02 0.0047 30.4 8.5 36 534-573 2-39 (305)
380 PLN02256 arogenate dehydrogena 30.4 2.1E+02 0.0045 31.6 8.4 40 525-567 29-70 (304)
381 PRK07530 3-hydroxybutyryl-CoA 30.4 1.2E+02 0.0026 32.6 6.5 42 533-577 5-48 (292)
382 TIGR02440 FadJ fatty oxidation 29.8 3.6E+02 0.0078 33.3 11.0 161 533-713 305-482 (699)
383 PRK09496 trkA potassium transp 29.6 4E+02 0.0086 30.2 10.8 91 534-652 2-101 (453)
384 cd01080 NAD_bind_m-THF_DH_Cycl 28.6 1.9E+02 0.0041 29.2 7.1 55 509-566 21-78 (168)
385 cd08245 CAD Cinnamyl alcohol d 28.5 4.9E+02 0.011 27.6 10.7 46 527-574 158-204 (330)
386 TIGR02279 PaaC-3OHAcCoADH 3-hy 28.4 1.2E+02 0.0027 35.7 6.6 45 532-579 5-51 (503)
387 COG1748 LYS9 Saccharopine dehy 28.1 1.4E+02 0.0031 34.3 6.8 96 533-654 2-102 (389)
388 PRK09496 trkA potassium transp 27.9 5.4E+02 0.012 29.1 11.5 105 531-660 230-340 (453)
389 PRK06522 2-dehydropantoate 2-r 27.5 3.6E+02 0.0079 28.6 9.5 37 534-573 2-40 (304)
390 PRK08268 3-hydroxy-acyl-CoA de 27.4 4.2E+02 0.009 31.4 10.7 163 532-714 7-185 (507)
391 PRK08703 short chain dehydroge 27.1 2.7E+02 0.006 28.2 8.2 43 531-576 5-50 (239)
392 PRK06130 3-hydroxybutyryl-CoA 27.1 3.6E+02 0.0077 29.2 9.4 42 532-576 4-47 (311)
393 PTZ00117 malate dehydrogenase; 27.1 8.8E+02 0.019 26.8 13.6 39 531-570 4-43 (319)
394 PLN02353 probable UDP-glucose 26.8 2.2E+02 0.0048 33.5 8.2 41 533-574 2-44 (473)
395 COG1568 Predicted methyltransf 26.6 71 0.0015 35.5 3.8 100 504-618 126-227 (354)
396 PRK05854 short chain dehydroge 26.1 3.3E+02 0.0071 29.5 8.9 77 531-621 13-102 (313)
397 PF02153 PDH: Prephenate dehyd 25.9 95 0.002 33.1 4.7 78 546-651 2-79 (258)
398 cd01842 SGNH_hydrolase_like_5 25.8 2.7E+02 0.0058 29.0 7.6 85 610-711 48-145 (183)
399 PRK06223 malate dehydrogenase; 25.8 5E+02 0.011 28.1 10.3 37 533-570 3-40 (307)
400 PRK08339 short chain dehydroge 25.2 2.8E+02 0.0061 29.0 8.0 76 531-621 7-94 (263)
401 PF02826 2-Hacid_dh_C: D-isome 24.7 71 0.0015 32.0 3.3 91 529-652 33-128 (178)
402 cd05188 MDR Medium chain reduc 24.6 2.2E+02 0.0048 28.7 7.0 43 530-574 133-176 (271)
403 PRK11064 wecC UDP-N-acetyl-D-m 24.6 4E+02 0.0086 30.6 9.6 37 533-572 4-42 (415)
404 TIGR00936 ahcY adenosylhomocys 24.2 2.8E+02 0.006 32.2 8.2 41 530-572 193-234 (406)
405 PRK07814 short chain dehydroge 24.2 2.5E+02 0.0054 29.1 7.4 74 531-620 9-95 (263)
406 PRK08213 gluconate 5-dehydroge 24.0 3.1E+02 0.0067 28.2 8.0 74 531-621 11-98 (259)
407 PRK08324 short chain dehydroge 23.8 4.7E+02 0.01 31.9 10.5 74 531-621 421-507 (681)
408 PRK05867 short chain dehydroge 23.5 2.8E+02 0.0062 28.4 7.6 76 531-622 8-96 (253)
409 PRK12829 short chain dehydroge 23.3 3.8E+02 0.0082 27.4 8.4 78 526-621 5-95 (264)
410 KOG0022 Alcohol dehydrogenase, 23.2 1.4E+02 0.0031 33.8 5.4 51 523-574 184-235 (375)
411 KOG2078 tRNA modification enzy 23.2 54 0.0012 38.1 2.3 63 531-606 249-311 (495)
412 PTZ00357 methyltransferase; Pr 23.2 1.8E+02 0.0039 36.2 6.5 76 534-618 703-798 (1072)
413 PRK06139 short chain dehydroge 23.1 3.3E+02 0.0073 30.0 8.4 75 531-621 6-93 (330)
414 PRK00066 ldh L-lactate dehydro 22.7 6.1E+02 0.013 28.1 10.3 79 530-622 4-83 (315)
415 PRK08945 putative oxoacyl-(acy 22.6 2.9E+02 0.0063 28.2 7.4 76 531-621 11-101 (247)
416 cd01339 LDH-like_MDH L-lactate 22.5 6.6E+02 0.014 27.2 10.4 31 537-569 3-35 (300)
417 cd05291 HicDH_like L-2-hydroxy 22.3 5.8E+02 0.012 27.8 10.0 75 534-622 2-78 (306)
418 PF05021 NPL4: NPL4 family; I 22.1 93 0.002 34.6 3.8 41 44-85 20-60 (306)
419 PRK07677 short chain dehydroge 21.9 3.1E+02 0.0066 28.1 7.4 72 533-620 2-86 (252)
420 PRK10669 putative cation:proto 21.9 3.1E+02 0.0067 32.5 8.3 93 533-653 418-518 (558)
421 PRK08277 D-mannonate oxidoredu 21.7 2.9E+02 0.0064 28.7 7.4 75 531-621 9-96 (278)
422 PTZ00082 L-lactate dehydrogena 21.7 1.1E+03 0.024 26.1 14.1 37 532-569 6-43 (321)
423 PRK06196 oxidoreductase; Provi 21.6 3.5E+02 0.0076 29.1 8.1 71 531-621 25-108 (315)
424 PRK07063 short chain dehydroge 21.5 3.5E+02 0.0077 27.7 7.8 77 531-621 6-95 (260)
425 PRK05650 short chain dehydroge 21.4 2.4E+02 0.0051 29.3 6.6 73 534-622 2-87 (270)
426 TIGR02356 adenyl_thiF thiazole 21.3 2.1E+02 0.0045 29.4 6.0 34 530-565 19-54 (202)
427 PRK06197 short chain dehydroge 21.1 5E+02 0.011 27.7 9.1 79 530-622 14-105 (306)
428 PRK08507 prephenate dehydrogen 20.8 2.6E+02 0.0057 29.8 6.8 40 534-574 2-43 (275)
429 PRK09242 tropinone reductase; 20.7 4.8E+02 0.01 26.7 8.6 78 531-622 8-98 (257)
430 TIGR02191 RNaseIII ribonucleas 20.7 1.4E+02 0.003 30.6 4.5 112 143-314 107-218 (220)
431 PRK06172 short chain dehydroge 20.7 3.5E+02 0.0075 27.6 7.5 75 531-621 6-93 (253)
432 PRK12826 3-ketoacyl-(acyl-carr 20.6 3.7E+02 0.008 27.1 7.6 76 531-622 5-93 (251)
433 PRK07454 short chain dehydroge 20.5 4E+02 0.0087 26.9 7.9 76 531-622 5-93 (241)
434 PRK07102 short chain dehydroge 20.5 3.5E+02 0.0076 27.4 7.5 72 533-619 2-83 (243)
435 KOG0023 Alcohol dehydrogenase, 20.2 4.1E+02 0.0089 30.3 8.2 46 529-576 179-225 (360)
436 PRK05476 S-adenosyl-L-homocyst 20.1 3E+02 0.0065 32.1 7.5 40 531-572 211-251 (425)
437 PRK06124 gluconate 5-dehydroge 20.1 3.7E+02 0.0079 27.5 7.6 75 531-621 10-97 (256)
438 PRK07035 short chain dehydroge 20.1 3.6E+02 0.0079 27.5 7.5 75 531-621 7-94 (252)
439 PRK08340 glucose-1-dehydrogena 20.0 3.7E+02 0.008 27.7 7.6 71 534-621 2-85 (259)
440 PRK08251 short chain dehydroge 20.0 5.3E+02 0.011 26.1 8.6 77 532-622 2-91 (248)
No 1
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=100.00 E-value=3.4e-42 Score=370.34 Aligned_cols=380 Identities=29% Similarity=0.339 Sum_probs=320.8
Q ss_pred cceEEeeecCccccccccCC--CCCcccccccccCccCccccccccccccceeeeeccceeecCCccccccchhhhhhhh
Q 004178 100 SEMRLYFAAPKSYLLDLSSD--LPNVEEVVDFEGSLNPRASYLYGQDIYGDAILASIGYTRKSEGLFHEDITLQSYYRML 177 (770)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~n~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (770)
.|| |...|+ +.+.. +.....-.++..++ .||+|.+||+|+|++|+|+|||+||
T Consensus 6 ~~c--~~~~~~----n~~e~~~~~~~~~~~~l~~~r-~r~~fk~~qd~~~~~~~a~~g~~w~------------------ 60 (404)
T KOG1045|consen 6 DEC--YSDIPK----NSLEAALLTPIDFSPPLAKQR-ARASFKNLQDIHGDKILADVGCGWR------------------ 60 (404)
T ss_pred CcC--cccCCc----chhhhccccccccccHHHHHh-hhhhhhcccCCCcchhhhhcCCccc------------------
Confidence 377 888888 33333 23344447888899 9999999999999999999999996
Q ss_pred hccCCCcccccchhhhhhhcCCcceeeccccCCCChhhHHHhhhhhcccCcceeecccCCccccccchhhhhhhhhcccc
Q 004178 178 IHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESA 257 (770)
Q Consensus 178 ~~~~p~g~~k~sr~~~~~a~lp~~~~~~~~w~g~~p~~~l~~fc~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (770)
|.+|+|+||.||++++.|.||..+| +..|||++||.+||+||||++|.+|++....++++.++++.++.+++++....
T Consensus 61 -~~s~n~~~k~s~~~~~~agl~f~~~-k~~~r~~~~~~~l~dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ie 138 (404)
T KOG1045|consen 61 -GSSYNGIYKESRTIEILAGLDFNET-KSVWRGPSVRPILGDFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIE 138 (404)
T ss_pred -ccccccccccchhhHHHcCCCchhh-hhhhcCcchhHHHHHHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhh
Confidence 9999999999999999999999998 99999999999999999999999999999999999999999999998776554
Q ss_pred cccccccCCCcccCCCc---eeeEEEEeeccCCcccccCchhhhhhhhhhHhhhhhHHHHHHHhhhCCCCCCcccccccc
Q 004178 258 ETGKECTSGGGTAASDN---VRCEVKIFSKSRDPILECSPKEFYKKQNESIENASLKVLSWLNAYFKDPDIPLEKLNNLV 334 (770)
Q Consensus 258 ~~~~~~~~~~~~~~~~~---~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 334 (770)
..+++. .-.-.++ |+|+++|..+.+++.++|++.+||.+.++||||++++++.|..+-|++ +.|..+
T Consensus 139 h~ds~~----~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~kf~~l~p~~~~~~s~h~feW~r~eFa~------w~~~vd 208 (404)
T KOG1045|consen 139 HVDSEP----LLSIPELVFGFLCPVKIVKSTPNLVFNCIFRKFNTLLPSAIRRHSDHKFEWPRKEFAD------WALYVD 208 (404)
T ss_pred cccchh----hhccchhhcccccceEEEEeCCCccccchhhhhcccCchhhhccccccccccHHHHHH------HHhhhh
Confidence 444222 1112222 999999999999999999999999999999999999999999999999 677777
Q ss_pred CCCCeeeccchhhhhcccccchhccccccccccccccccccccccCCCCceeeeecCCCCCCccCCCCceeEEEEEEEEE
Q 004178 335 GALDIQCYPQNFFKKFSSYRFIHNVQQRKMGEKLLQANSINTLNAIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLV 414 (770)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~y~~~l~ 414 (770)
+..|......+-+-.....+. +. -+..+++++.| ++|+.+-|+|+..+-
T Consensus 209 ~~y~~~~~~~~~vg~pp~~~e-------------------~v---~~~~qirIfs~---------t~g~~~qi~~~~~~~ 257 (404)
T KOG1045|consen 209 DRYDMYVVEHTGVGNPPKLVE-------------------NV---GLMPQIRIFSI---------TNGSYTQICYSEQSK 257 (404)
T ss_pred hcCcceEEeecccCCchhhhc-------------------cc---cccceeEEEEe---------cCCcEEEEeeccccc
Confidence 766665544443322222221 11 16778899999 999999999999988
Q ss_pred ec------ccccccceecccceeeeccCCcccccceeeeeeccccccceecccCC-chhhhhhccCCccchhhccccccc
Q 004178 415 IE------GETMKELLESREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELP-PQELILAAADDSARTFSLLSSRAC 487 (770)
Q Consensus 415 ~~------~~~~~~l~e~~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~-p~elflaa~~~~~~diS~Ls~~~~ 487 (770)
.+ |+.++ |+++++++..|.+.+..++++.|+||.+|+.++|-+..+ ...+++.+........+.++--.+
T Consensus 258 ~~~~~~~f~~s~~---es~e~~e~~v~~~~~~q~~~~~v~q~~~g~k~~f~~s~~~~~~l~~~~~~~~~~~~s~l~~v~~ 334 (404)
T KOG1045|consen 258 VNADKHKFGKSRK---ESNEEIEKLVGRFEMNQHLEPEVQQMLVGYKAQFGASQPAAERLQVTLNTPTPCELSVLEEVGH 334 (404)
T ss_pred CCcchhccccCch---HHhhhhhhhhccccccccccHHHHHHHHHHHHHhhcCcccccceeeeccCCcccccchhhhhcc
Confidence 54 44444 499999999999999999999999999999999999999 566688888888788888887777
Q ss_pred ccceeeeecccCCChhhhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhc
Q 004178 488 CLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLD 551 (770)
Q Consensus 488 ~Ley~i~lL~v~ep~eeR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk 551 (770)
+.+.+.++.+.-+.+++.+..++.++..++|..+...+.......++|+.|||.|........
T Consensus 335 -~~~~i~ll~~~~~~~~~~el~~~~~~~~~~~~~~~~k~s~~ssa~~~l~~~~~s~v~~d~~~d 397 (404)
T KOG1045|consen 335 -LKERIGLLLVAGNLEKEIELDFLKPSLKKQRLEYALKHSRSSSADTLLLFSCGSGVLFDLTLD 397 (404)
T ss_pred -chhccccceeccCcceeeehhhccchhhhhchhhHhhhhHHhhhhhhhhhccccceehhhccC
Confidence 889999999988999999999999999999999999988877889999999999988764433
No 2
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.73 E-value=6.4e-18 Score=174.68 Aligned_cols=174 Identities=22% Similarity=0.276 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 004178 515 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 591 (770)
Q Consensus 515 L~~qR~e~Il~~L~~---~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~ 591 (770)
+.+-|..++.+.+.. ..+.+|||+|||-|.++..||+.+ ..|+|+|+++++|+.|+.+.. .
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~-------------e 103 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHAL-------------E 103 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhh-------------h
Confidence 445666777666654 578999999999999999999998 999999999999999987542 2
Q ss_pred CCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCC
Q 004178 592 DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDD 670 (770)
Q Consensus 592 ~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~ 670 (770)
..-.+++.+..++++....++||+|+|.+||||+++ + +.|++.+.+++||| .++++|+|..+..++..+. +
T Consensus 104 ~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p-~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~--~---- 175 (243)
T COG2227 104 SGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-P-ESFLRACAKLVKPGGILFLSTINRTLKAYLLAII--G---- 175 (243)
T ss_pred ccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-H-HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHH--H----
Confidence 233578999999988877789999999999999993 3 34777899999998 9999999999888776553 1
Q ss_pred CchhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEE-EEEeeeC
Q 004178 671 PDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGG 718 (770)
Q Consensus 671 pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~V-EF~GvG~ 718 (770)
.+|..+ +.+...++.+.+..++|+..|+.+ .++.+ .+.|+-.
T Consensus 176 -ae~vl~-~vP~gTH~~~k~irp~El~~~~~~----~~~~~~~~~g~~y 218 (243)
T COG2227 176 -AEYVLR-IVPKGTHDYRKFIKPAELIRWLLG----ANLKIIDRKGLTY 218 (243)
T ss_pred -HHHHHH-hcCCcchhHHHhcCHHHHHHhccc----CCceEEeecceEe
Confidence 134322 666777788888999999988863 34433 4555554
No 3
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.71 E-value=3.1e-16 Score=170.04 Aligned_cols=162 Identities=21% Similarity=0.222 Sum_probs=119.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
++.+|||||||+|.++..|++.+ .+|+|||++++|++.|+++... .....++++.++|++++++.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~-----------~~~~~~i~~~~~dae~l~~~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADM-----------DPVTSTIEYLCTTAEKLADEG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-----------cCcccceeEEecCHHHhhhcc
Confidence 46799999999999999999876 7999999999999999876421 012247999999999988777
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCchhhhhccccccCCCccc
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 689 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh~DHkf 689 (770)
+.||+|+|.++|||+.+ + ..+++++.++|||| .++++++|.....++.... ..+|. ..+.+...+.+..
T Consensus 197 ~~FD~Vi~~~vLeHv~d-~-~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~-------~~eyi-~~~lp~gth~~~~ 266 (322)
T PLN02396 197 RKFDAVLSLEVIEHVAN-P-AEFCKSLSALTIPNGATVLSTINRTMRAYASTIV-------GAEYI-LRWLPKGTHQWSS 266 (322)
T ss_pred CCCCEEEEhhHHHhcCC-H-HHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhh-------hHHHH-HhcCCCCCcCccC
Confidence 89999999999999993 3 35667899999999 9999999987654443221 01121 1122222233344
Q ss_pred ccCHHHHHHHHHHHHHHCCcEE-EEEeeeCCC
Q 004178 690 EWTRDQFNCWATELAARHNYSV-EFSGVGGSG 720 (770)
Q Consensus 690 ewTreEF~~Wa~~La~r~GY~V-EF~GvG~~p 720 (770)
+++++++.. +++++|+.+ +..|+...|
T Consensus 267 f~tp~eL~~----lL~~aGf~i~~~~G~~~~p 294 (322)
T PLN02396 267 FVTPEELSM----ILQRASVDVKEMAGFVYNP 294 (322)
T ss_pred CCCHHHHHH----HHHHcCCeEEEEeeeEEcC
Confidence 689999995 557789987 556666544
No 4
>KOG1045 consensus Uncharacterized conserved protein HEN1/CORYMBOSA2 [Function unknown]
Probab=99.65 E-value=4.1e-17 Score=177.14 Aligned_cols=242 Identities=24% Similarity=0.343 Sum_probs=185.0
Q ss_pred hhhhhhcCCchHHHHH-HHHHHHHhhcCCCCEEEEEcCccchHHH-HHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhh
Q 004178 504 DRMEQALFSPPLSKQR-VEYALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLS 581 (770)
Q Consensus 504 eR~e~~~F~PPL~~qR-~e~Il~~L~~~~~~rVLDIGCGtG~ll~-~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s 581 (770)
.++....|++|++.+| +..........+++.+.|+|||.-.... .+.+...+.....|+|+++..+.++...++..+.
T Consensus 20 ~~~~~~~~~~~l~~~r~r~~fk~~qd~~~~~~~a~~g~~w~~~s~n~~~k~s~~~~~~agl~f~~~k~~~r~~~~~~~l~ 99 (404)
T KOG1045|consen 20 ALLTPIDFSPPLAKQRARASFKNLQDIHGDKILADVGCGWRGSSYNGIYKESRTIEILAGLDFNETKSVWRGPSVRPILG 99 (404)
T ss_pred ccccccccccHHHHHhhhhhhhcccCCCcchhhhhcCCcccccccccccccchhhHHHcCCCchhhhhhhcCcchhHHHH
Confidence 4456778999999999 4445555566778899999999842211 1122222446778999999865554433333222
Q ss_pred cccccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhh
Q 004178 582 KKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQK 661 (770)
Q Consensus 582 ~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~ 661 (770)
+.+.++..+..|..+.|.+.+.......+|.|++.+.++|++.++...+.+.+++.+.|..++++|||..||..+.+
T Consensus 100 ---dF~r~r~l~l~I~~~~G~~v~s~s~i~~~d~v~~~e~ieh~ds~~~~~ip~~vfG~~~p~~iv~stpn~~~N~~~~k 176 (404)
T KOG1045|consen 100 ---DFLRSRQLPLPILLLSGNVVDSLSKILRSDAVLAIELIEHVDSEPLLSIPELVFGFLCPVKIVKSTPNLVFNCIFRK 176 (404)
T ss_pred ---HHhhhhcCCcceeeecCCccccHHHHHhhhhhhhhhhhhcccchhhhccchhhcccccceEEEEeCCCccccchhhh
Confidence 23444667778999999988766556789999999999999999999999999999999999999999999998887
Q ss_pred hccccCCCCCchhhhhcccccc-CCCcccccCHHHHHHHHHHHHHHC-CcEEEEEeeeCCCCC--CCCccceeeeeecCC
Q 004178 662 SSSTIQEDDPDEKTQLQSCKFR-NHDHKFEWTRDQFNCWATELAARH-NYSVEFSGVGGSGDR--EPGFASQIAVFRSRT 737 (770)
Q Consensus 662 ~~~~g~~e~pde~~~~~~~~fR-h~DHkfewTreEF~~Wa~~La~r~-GY~VEF~GvG~~p~~--e~Gf~TQiAVF~R~~ 737 (770)
+.+. ....++ |.+|+|+|++.+|+.|+-.+..++ .|.+++.|+|.+|.. +.|+.+||+||++..
T Consensus 177 f~~l------------~p~~~~~~s~h~feW~r~eFa~w~~~vd~~y~~~~~~~~~vg~pp~~~e~v~~~~qirIfs~t~ 244 (404)
T KOG1045|consen 177 FNTL------------LPSAIRRHSDHKFEWPRKEFADWALYVDDRYDMYVVEHTGVGNPPKLVENVGLMPQIRIFSITN 244 (404)
T ss_pred hccc------------CchhhhccccccccccHHHHHHHHhhhhhcCcceEEeecccCCchhhhccccccceeEEEEecC
Confidence 7411 123344 899999999999999999999999 567788899998765 678999999999989
Q ss_pred CCCCcccccCCCCccceEEEEEe
Q 004178 738 PPEEDDLLKDGDSAHHYKVIWEW 760 (770)
Q Consensus 738 ~~~~~~~~~~~~~~~~y~~v~~w 760 (770)
+..+.....+..+-++++....-
T Consensus 245 g~~~qi~~~~~~~~~~~~~~f~~ 267 (404)
T KOG1045|consen 245 GSYTQICYSEQSKVNADKHKFGK 267 (404)
T ss_pred CcEEEEeecccccCCcchhcccc
Confidence 98888777666666666655443
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.7e-15 Score=157.80 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
++..-.+.+++.+...++.+|||+|||||.++..+++..+ ..+|+|+|+|+.||+.|++++.. .+..
T Consensus 35 ~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~------------~~~~ 101 (238)
T COG2226 35 LHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKK------------KGVQ 101 (238)
T ss_pred chHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhc------------cCcc
Confidence 3444445555666666899999999999999999999885 78999999999999999998742 2334
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
+++|+++|++++|+++++||+|++...|++++ +.. ..+++++|+||||
T Consensus 102 ~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~-d~~-~aL~E~~RVlKpg 149 (238)
T COG2226 102 NVEFVVGDAENLPFPDNSFDAVTISFGLRNVT-DID-KALKEMYRVLKPG 149 (238)
T ss_pred ceEEEEechhhCCCCCCccCEEEeeehhhcCC-CHH-HHHHHHHHhhcCC
Confidence 59999999999999999999999999999999 443 4456799999998
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=3e-15 Score=155.57 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=81.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+++.+...++.+|||+|||+|.++..+++..++..+|+|+|+|+.|++.|++++.. .+..+|++.++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~------------~~~~~i~~v~~ 105 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKR------------EGLQNIEFVQG 105 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHH------------TT--SEEEEE-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHh------------hCCCCeeEEEc
Confidence 455666677789999999999999999998765668999999999999999998753 23348999999
Q ss_pred CccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE---EecC
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV---STPN 652 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII---STPN 652 (770)
|++++|+++++||+|+|...+++++ +... .+++++|+|||| .++| +.|.
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~~-d~~~-~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNFP-DRER-ALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-S-SHHH-HHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred CHHHhcCCCCceeEEEHHhhHHhhC-CHHH-HHHHHHHHcCCCeEEEEeeccCCC
Confidence 9999999999999999999999998 4444 456799999998 4443 4554
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=1.7e-14 Score=151.70 Aligned_cols=120 Identities=21% Similarity=0.166 Sum_probs=94.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+|++|++.|+++..... .....++++.++|
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---------~~~~~~i~~~~~d 135 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---------KSCYKNIEWIEGD 135 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---------hccCCCeEEEEcc
Confidence 3445555678899999999999999998865455799999999999999987652110 1233579999999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
++++|+++++||+|++..+++|++ ++. .++++++++|||| .+++.....
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~-d~~-~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVV-DRL-KAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCC-CHH-HHHHHHHHHcCcCcEEEEEECCC
Confidence 999999889999999999999998 443 4556799999998 666665543
No 8
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.58 E-value=4.2e-15 Score=155.15 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=123.8
Q ss_pred cCCchHHHHHHHHHHHHhhc-----CC------CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 004178 510 LFSPPLSKQRVEYALQHIKE-----SC------ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578 (770)
Q Consensus 510 ~F~PPL~~qR~e~Il~~L~~-----~~------~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~ 578 (770)
...+.+...|+.++.+-+.. .+ +.+|||+|||.|.++..|++.+ .+|+|+|++++|++.|++....
T Consensus 57 ~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~ 133 (282)
T KOG1270|consen 57 HPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKM 133 (282)
T ss_pred hhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhc
Confidence 34445667788887655422 12 3679999999999999999998 8999999999999999886321
Q ss_pred hhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhH
Q 004178 579 KLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 657 (770)
Q Consensus 579 ~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~ 657 (770)
.. .....-..++++.+.+++... +.||+|+|++|+||+. + .+.|.+.+.+.|||+ .++|+|.|+....
T Consensus 134 dP------~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcsevleHV~-d-p~~~l~~l~~~lkP~G~lfittinrt~lS 202 (282)
T KOG1270|consen 134 DP------VLEGAIAYRLEYEDTDVEGLT---GKFDAVVCSEVLEHVK-D-PQEFLNCLSALLKPNGRLFITTINRTILS 202 (282)
T ss_pred Cc------hhccccceeeehhhcchhhcc---cccceeeeHHHHHHHh-C-HHHHHHHHHHHhCCCCceEeeehhhhHHH
Confidence 10 000111225777788877764 3499999999999997 3 346666799999998 9999999998877
Q ss_pred HHhhhccccCCCCCchhhhhccccccCCCcccccCHHHHHHHHHH
Q 004178 658 ILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATE 702 (770)
Q Consensus 658 lf~~~~~~g~~e~pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~ 702 (770)
++..+. +.|+..+ +.+.+.+....+.+++++..|+..
T Consensus 203 ~~~~i~-------~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 203 FAGTIF-------LAEIVLR-IVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred hhcccc-------HHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHh
Confidence 776542 3444322 445555555566899999987753
No 9
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=7.8e-14 Score=145.46 Aligned_cols=171 Identities=16% Similarity=0.160 Sum_probs=114.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+++.+. .++.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|++++... ....+++++++|
T Consensus 37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~-----------g~~~~v~~~~~d 101 (255)
T PRK11036 37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAK-----------GVSDNMQFIHCA 101 (255)
T ss_pred HHHhcC-CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-----------CCccceEEEEcC
Confidence 444443 456899999999999999999986 79999999999999999876421 223579999999
Q ss_pred ccccC-CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCchhhhhccc
Q 004178 603 ITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 680 (770)
Q Consensus 603 aedlp-~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~ 680 (770)
+.+++ ..++.||+|+|..+++|+. ++. .+++++.++|||| .+++..+|..... +.... .+..+ ....+....
T Consensus 102 ~~~l~~~~~~~fD~V~~~~vl~~~~-~~~-~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~-~~~~~--~~~~~~~~~ 175 (255)
T PRK11036 102 AQDIAQHLETPVDLILFHAVLEWVA-DPK-SVLQTLWSVLRPGGALSLMFYNANGLL-MHNMV-AGNFD--YVQAGMPKR 175 (255)
T ss_pred HHHHhhhcCCCCCEEEehhHHHhhC-CHH-HHHHHHHHHcCCCeEEEEEEECccHHH-HHHHH-ccChH--HHHhcCccc
Confidence 98764 4467899999999999998 443 4556799999999 7777777765321 11110 00000 000000000
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHHCCcEEE-EEeeeC
Q 004178 681 KFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 718 (770)
Q Consensus 681 ~fRh~DHkfewTreEF~~Wa~~La~r~GY~VE-F~GvG~ 718 (770)
..+.....+.++++++.+|+ ++.||.++ ..|++.
T Consensus 176 ~~~~~~p~~~~~~~~l~~~l----~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 176 KKRTLSPDYPLDPEQVYQWL----EEAGWQIMGKTGVRV 210 (255)
T ss_pred cccCCCCCCCCCHHHHHHHH----HHCCCeEeeeeeEEE
Confidence 00111123357899999766 67899884 566653
No 10
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.56 E-value=2.1e-14 Score=124.06 Aligned_cols=94 Identities=22% Similarity=0.396 Sum_probs=77.2
Q ss_pred EEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccE
Q 004178 536 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDI 615 (770)
Q Consensus 536 LDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDl 615 (770)
||+|||+|..+..|++.. ..+|+|+|+++++++.++++.. ..++.+.++|++++++++++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~--~~~v~~~D~~~~~~~~~~~~~~---------------~~~~~~~~~d~~~l~~~~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRG--GASVTGIDISEEMLEQARKRLK---------------NEGVSFRQGDAEDLPFPDNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTT--TCEEEEEES-HHHHHHHHHHTT---------------TSTEEEEESBTTSSSS-TT-EEE
T ss_pred CEecCcCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHhccc---------------ccCchheeehHHhCccccccccc
Confidence 899999999999999982 3899999999999999998652 23566999999999999999999
Q ss_pred EEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 616 GTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 616 VVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
|++..+++|++ +...+++++.|+|||| .++|
T Consensus 64 v~~~~~~~~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 64 VFSNSVLHHLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEESHGGGSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccceeecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 99999999994 4456666899999998 5543
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.55 E-value=3.6e-14 Score=134.61 Aligned_cols=136 Identities=24% Similarity=0.359 Sum_probs=99.5
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
..++.+|||||||.|.++..|++.+ .+|+|+|+++.+++. . ++.....+....+.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~--~--------------------~~~~~~~~~~~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK--R--------------------NVVFDNFDAQDPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH--T--------------------TSEEEEEECHTHHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh--h--------------------hhhhhhhhhhhhhc
Confidence 4568899999999999999998887 699999999999987 1 11222222234444
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCch--hHHHhhhccccCCCCCchhhhhccccccC-
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY--NAILQKSSSTIQEDDPDEKTQLQSCKFRN- 684 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ef--N~lf~~~~~~g~~e~pde~~~~~~~~fRh- 684 (770)
..+.||+|+|+.+|+|++ + ...+++.+.++|||| .+++++|+... ...+.. +...+.
T Consensus 75 ~~~~fD~i~~~~~l~~~~-d-~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 135 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLP-D-PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLK-----------------WRYDRPY 135 (161)
T ss_dssp HSSSEEEEEEESSGGGSS-H-HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHH-----------------CCGTCHH
T ss_pred cccchhhHhhHHHHhhcc-c-HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHh-----------------cCCcCcc
Confidence 568999999999999999 4 446666899999998 99999998642 112221 111111
Q ss_pred CCcccccCHHHHHHHHHHHHHHCCcEEE
Q 004178 685 HDHKFEWTRDQFNCWATELAARHNYSVE 712 (770)
Q Consensus 685 ~DHkfewTreEF~~Wa~~La~r~GY~VE 712 (770)
..|...+++++++. +++++||.+.
T Consensus 136 ~~~~~~~~~~~~~~----ll~~~G~~iv 159 (161)
T PF13489_consen 136 GGHVHFFSPDELRQ----LLEQAGFEIV 159 (161)
T ss_dssp TTTTEEBBHHHHHH----HHHHTTEEEE
T ss_pred CceeccCCHHHHHH----HHHHCCCEEE
Confidence 16777899999995 5578898873
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.55 E-value=6.4e-14 Score=126.34 Aligned_cols=108 Identities=24% Similarity=0.315 Sum_probs=84.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCc-cccCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI-TVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDa-edlp~~ 609 (770)
++.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|++++.. .....+++++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~i~~~~~d~~~~~~-~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAE-----------EGLSDRITFVQGDAEFDPD-F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH-----------TTTTTTEEEEESCCHGGTT-T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHh-----------cCCCCCeEEEECccccCcc-c
Confidence 46899999999999999999932 238999999999999999998732 12446899999999 3333 3
Q ss_pred CCCccEEEecc-ccccCCh-hHHHHHHHHHHHcccCC-EEEEEec
Q 004178 610 LHGFDIGTCLE-VIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 610 d~sFDlVVc~e-VLEHL~~-d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
...||+|++.. +++++.. ++...+++.+.+.|+|| .++|.++
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 46799999999 6665543 45667777899999999 7777654
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=145.64 Aligned_cols=127 Identities=17% Similarity=0.171 Sum_probs=102.8
Q ss_pred cCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC
Q 004178 510 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP 589 (770)
Q Consensus 510 ~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~p 589 (770)
.|..|-.......+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.|++.|+++..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~------------ 96 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNS------------ 96 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcC------------
Confidence 344455445566677777777889999999999999998887542 699999999999999988652
Q ss_pred CCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 590 CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 590 r~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
...++.+..+|+.+.+++++.||+|++..+++|++.++...++++++++|||| .++++.+.
T Consensus 97 --~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 97 --DKNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred --cCCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 12479999999998888888999999999999998555667777899999999 77776554
No 14
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.54 E-value=3.4e-13 Score=137.14 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=112.9
Q ss_pred HHHHhh--cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 523 ALQHIK--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 523 Il~~L~--~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|++|++.|++++... ....++++.+
T Consensus 45 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~i~~~~ 110 (219)
T TIGR02021 45 LLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGR-----------DVAGNVEFEV 110 (219)
T ss_pred HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhc-----------CCCCceEEEE
Confidence 344444 3567899999999999999999875 79999999999999999877421 1124799999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCchhhhhccc
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSC 680 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~ 680 (770)
+|+.+.+ ++||+|++..+++|++++....+..++.++++++.++..+|...+...+.... ..+.
T Consensus 111 ~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~-------------~~~~ 174 (219)
T TIGR02021 111 NDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIG-------------ELFP 174 (219)
T ss_pred CChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHH-------------hhCc
Confidence 9998875 68999999999999986666677778999999885555555544333332210 0011
Q ss_pred cccCCCcccccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 681 KFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 681 ~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
......+....+++++. .++.++||.+.-.
T Consensus 175 ~~~~~~~~~~~~~~~~~----~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 175 GSSRATSAYLHPMTDLE----RALGELGWKIVRE 204 (219)
T ss_pred CcccccceEEecHHHHH----HHHHHcCceeeee
Confidence 11223344557888888 4557889988654
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.8e-13 Score=141.19 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=88.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+++.+...++.+|||+|||+|.++..|++.. +..+|+|+|+|+.|++.|++ .++++.++|
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~-------------------~~~~~~~~d 80 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE-------------------RGVDARTGD 80 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh-------------------cCCcEEEcC
Confidence 4555666678999999999999999999875 44799999999999999965 147889999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+++++ .++.||+|+|..++||++ +. ..++++++++|||| .+++..|+
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~-d~-~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVP-EH-ADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCC-CH-HHHHHHHHHhCCCCcEEEEEcCC
Confidence 98775 457899999999999998 44 34556799999999 77777665
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.51 E-value=1e-13 Score=133.25 Aligned_cols=107 Identities=30% Similarity=0.480 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC--C
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp--~ 608 (770)
++.+|||+|||+|.++..|++..++..+++|+|++++|++.|++++.. .+..+++|.++|+.+++ .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~------------~~~~ni~~~~~d~~~l~~~~ 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE------------LGLDNIEFIQGDIEDLPQEL 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH------------TTSTTEEEEESBTTCGCGCS
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc------------ccccccceEEeehhcccccc
Confidence 578999999999999999994322458999999999999999997643 24458999999999976 4
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+ ..||+|++..+++|+. +. ..+++.+.++|++| .+++..++
T Consensus 71 ~-~~~D~I~~~~~l~~~~-~~-~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 E-EKFDIIISNGVLHHFP-DP-EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S-TTEEEEEEESTGGGTS-HH-HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-CCeeEEEEcCchhhcc-CH-HHHHHHHHHHcCCCcEEEEEECC
Confidence 4 7999999999999998 33 35556799999998 77777776
No 17
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.50 E-value=1.8e-13 Score=144.30 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=113.9
Q ss_pred hhhccCCccchhhcccccccccceeeeecccCC-----Chh--------hhhhhhcCCchHHHHHHHHHHHHhhcCCCCE
Q 004178 468 ILAAADDSARTFSLLSSRACCLEYHITLLRVTE-----PPE--------DRMEQALFSPPLSKQRVEYALQHIKESCATT 534 (770)
Q Consensus 468 flaa~~~~~~diS~Ls~~~~~Ley~i~lL~v~e-----p~e--------eR~e~~~F~PPL~~qR~e~Il~~L~~~~~~r 534 (770)
-+.|.+.|.+|++ .++|++++.... +.. .++....++.|+...-.+.+.+.+. ....+
T Consensus 18 ~~~C~~~h~fd~a--------~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~ 88 (272)
T PRK11088 18 SWICPQNHQFDCA--------KEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLD-EKATA 88 (272)
T ss_pred EEEcCCCCCCccc--------cCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcC-CCCCe
Confidence 4788889999998 889999985211 111 1123455666777655555554443 34678
Q ss_pred EEEEcCccchHHHHHhcCCCC--CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCC
Q 004178 535 LVDFGCGSGSLLDSLLDYPTA--LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 612 (770)
Q Consensus 535 VLDIGCGtG~ll~~LAk~ggp--~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~s 612 (770)
|||+|||+|.++..|++..+. ...|+|+|+|+.|++.|+++. +++.+.++|+.++|+.+++
T Consensus 89 vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 89 LLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRLPFADQS 151 (272)
T ss_pred EEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccCCCcCCc
Confidence 999999999999998876421 147999999999999997632 3688999999999988899
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchh
Q 004178 613 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 656 (770)
Q Consensus 613 FDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN 656 (770)
||+|++...-. ..+++.|+|||| .+++.+|+....
T Consensus 152 fD~I~~~~~~~---------~~~e~~rvLkpgG~li~~~p~~~~l 187 (272)
T PRK11088 152 LDAIIRIYAPC---------KAEELARVVKPGGIVITVTPGPRHL 187 (272)
T ss_pred eeEEEEecCCC---------CHHHHHhhccCCCEEEEEeCCCcch
Confidence 99999876521 124689999998 888888886543
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=2.3e-13 Score=148.35 Aligned_cols=118 Identities=20% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHHHhhc-----CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 520 VEYALQHIKE-----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 520 ~e~Il~~L~~-----~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
.+.+++.+.. .++.+|||||||+|.++..|++..+ .+|+|+|+|+.|++.|+++... .....
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~-----------~g~~~ 168 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAA-----------QGLSD 168 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHh-----------cCCCC
Confidence 3334454444 5678999999999999999998642 7999999999999999886642 12234
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+++|.++|+.+++++++.||+|++.++++|++ +. ..++++++++|||| .+++.+..
T Consensus 169 ~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~-d~-~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 169 KVSFQVADALNQPFEDGQFDLVWSMESGEHMP-DK-RKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred ceEEEEcCcccCCCCCCCccEEEECCchhccC-CH-HHHHHHHHHHcCCCcEEEEEEec
Confidence 79999999999998889999999999999998 33 35566799999998 77776543
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=6.1e-13 Score=137.86 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
+.....+.+++.+....+.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++. .
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~-----------------~ 85 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD-----------------A 85 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC-----------------C
Confidence 444445556666665567899999999999999998866 79999999999999998743 1
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCch
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 655 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ef 655 (770)
...+.++|++.+++.+++||+|++..+++|++ +.. .++.++.++|||| .++++++....
T Consensus 86 ~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~-d~~-~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 86 ADHYLAGDIESLPLATATFDLAWSNLAVQWCG-NLS-TALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCEEEcCcccCcCCCCcEEEEEECchhhhcC-CHH-HHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 34678999999888888999999999999987 443 4556799999998 88888887543
No 20
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=2.2e-13 Score=137.42 Aligned_cols=110 Identities=14% Similarity=0.147 Sum_probs=90.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++... .+..++++..+|
T Consensus 22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~------------~~~~~v~~~~~d 86 (197)
T PRK11207 22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAA------------ENLDNLHTAVVD 86 (197)
T ss_pred HHHhcccCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCcceEEecC
Confidence 3445555567899999999999999999986 7999999999999999886642 233468899999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
+.+.++. ..||+|+|..+++|++++....+++++.++|||| .+++
T Consensus 87 ~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 87 LNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9877664 6799999999999998777788888999999998 5333
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.50 E-value=3.8e-13 Score=137.21 Aligned_cols=117 Identities=15% Similarity=0.215 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+++.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|++++.. ....++++.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------------~~~~~v~~~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKD------------AGLHNVELVH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHh------------cCCCceEEEE
Confidence 4556666766788999999999999999988754557999999999999999987642 2345799999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+|+.++++++++||+|++..+++|++ +. ..+++++.++|+|| .+++..+
T Consensus 103 ~d~~~~~~~~~~fD~V~~~~~l~~~~-~~-~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAMELPFDDNSFDYVTIGFGLRNVP-DY-MQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred echhcCCCCCCCccEEEEecccccCC-CH-HHHHHHHHHHcCcCeEEEEEEC
Confidence 99998887778999999999999998 33 35566799999998 5655444
No 22
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.48 E-value=1.5e-12 Score=141.15 Aligned_cols=169 Identities=21% Similarity=0.253 Sum_probs=111.0
Q ss_pred HHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 004178 519 RVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 595 (770)
Q Consensus 519 R~e~Il~~L~~---~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~ 595 (770)
.++.+++.+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++...... .....+
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~-------~~~~~~ 198 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAA-------LPPEVL 198 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccc-------cccccc
Confidence 34455555543 257899999999999999999886 79999999999999999876432100 011346
Q ss_pred EEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE-ecCCchhHHHhhhccccCCCCCchh
Q 004178 596 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEK 674 (770)
Q Consensus 596 Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS-TPN~efN~lf~~~~~~g~~e~pde~ 674 (770)
+.|..+|+.++ ++.||+|+|..+++|++++....+.+.+.+ +.+|.++|+ .|+......+.... .
T Consensus 199 ~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g---~------- 264 (315)
T PLN02585 199 PKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIG---E------- 264 (315)
T ss_pred eEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHH---h-------
Confidence 88999998655 478999999999999987666666665654 456644554 45432222222210 0
Q ss_pred hhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeC
Q 004178 675 TQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 718 (770)
Q Consensus 675 ~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~ 718 (770)
.+.........+.++++++++ +.++.||.|....+-.
T Consensus 265 ---~~~g~~~~~r~y~~s~eel~~----lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 265 ---LFPGPSKATRAYLHAEADVER----ALKKAGWKVARREMTA 301 (315)
T ss_pred ---hcCCCCcCceeeeCCHHHHHH----HHHHCCCEEEEEEEee
Confidence 011111111224568999994 5578899997655544
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=7e-13 Score=143.85 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=90.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+...+....+++|||||||+|.++..+++.+. ..|+|+|+|+.|+..++...+ . .....++++.
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~-~----------~~~~~~i~~~ 177 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRK-L----------LGNDQRAHLL 177 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHH-h----------cCCCCCeEEE
Confidence 44455666666789999999999999999998863 569999999999976543221 0 0123479999
Q ss_pred ECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 600 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
.+|+++++. .+.||+|+|.++++|+. ++. .+++++++.|+|| .+++.+.
T Consensus 178 ~~d~e~lp~-~~~FD~V~s~~vl~H~~-dp~-~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 178 PLGIEQLPA-LKAFDTVFSMGVLYHRR-SPL-DHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred eCCHHHCCC-cCCcCEEEECChhhccC-CHH-HHHHHHHHhcCCCcEEEEEEE
Confidence 999999987 78899999999999997 444 4556799999998 7777654
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=6.3e-13 Score=138.47 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHhh--cCCCCEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 514 PLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 514 PL~~qR~e~Il~~L~--~~~~~rVLDIGCGtG~ll~~LAk~g-gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
|.|..-+..+...+. ..++.+|||+|||+|..+..+++.. .+..+|+|+|+|+.|++.|++++...
T Consensus 37 p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~----------- 105 (247)
T PRK15451 37 PGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY----------- 105 (247)
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 455544444433322 2357899999999999998887632 24589999999999999999987421
Q ss_pred CCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 591 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 591 ~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
....++++.++|+.+++.. .+|+|++..++||++++....++++++++|||| .++++..
T Consensus 106 ~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 106 KAPTPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred CCCCCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 1234799999999887754 599999999999998777778888999999998 7666653
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.46 E-value=6.4e-14 Score=125.74 Aligned_cols=97 Identities=23% Similarity=0.371 Sum_probs=79.9
Q ss_pred EEEEcCccchHHHHHhcCC--CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCC
Q 004178 535 LVDFGCGSGSLLDSLLDYP--TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 612 (770)
Q Consensus 535 VLDIGCGtG~ll~~LAk~g--gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~s 612 (770)
|||+|||+|..+..+++.. ++..+++|+|+|++|++.|+++... ...+++++++|+.++++.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-------------~~~~~~~~~~D~~~l~~~~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-------------DGPKVRFVQADARDLPFSDGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-------------TTTTSEEEESCTTCHHHHSSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-------------cCCceEEEECCHhHCcccCCC
Confidence 7999999999999998764 2347999999999999999987642 123899999999999888889
Q ss_pred ccEEEec-cccccCChhHHHHHHHHHHHcccCC
Q 004178 613 FDIGTCL-EVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 613 FDlVVc~-eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
||+|+|. .+++|+.+++...+++++.++||||
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999995 5599999999999999999999996
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=1.1e-12 Score=132.16 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+.+.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.++++... .+. ++.+..+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~------------~~~-~v~~~~~ 84 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAR------------ENL-PLRTDAY 84 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHH------------hCC-CceeEec
Confidence 45556666667899999999999999999986 7999999999999999876532 122 3777888
Q ss_pred CccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
|+...+.. .+||+|++..+++|++.+....+.+++.++|||| .+++
T Consensus 85 d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 85 DINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred cchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 87665543 5799999999999998777778888999999998 5444
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=9e-13 Score=140.18 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
.....++.+++.++..++.+|||||||.|.++..+++..+ .+|+|+.+|++..+.|++++.. .+...
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~-----------~gl~~ 112 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIRE-----------AGLED 112 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHC-----------STSSS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHh-----------cCCCC
Confidence 3445677788888889999999999999999999999842 8999999999999999998753 23345
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
++++..+|..+++. .||.|++++++||+.......|.+.+.++|||| .+++.+
T Consensus 113 ~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp TEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 79999999887754 999999999999998777778888999999999 665533
No 28
>PRK06202 hypothetical protein; Provisional
Probab=99.43 E-value=2.2e-12 Score=132.48 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=84.8
Q ss_pred cCCCCEEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 605 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~---ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed 605 (770)
..++.+|||+|||+|.++..|++. .++..+|+|+|++++|++.|+++.. ..++++..++...
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~~~~~~~ 122 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---------------RPGVTFRQAVSDE 122 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---------------cCCCeEEEEeccc
Confidence 346789999999999998888753 1234699999999999999987531 1246677777766
Q ss_pred cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCc
Q 004178 606 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 654 (770)
Q Consensus 606 lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~e 654 (770)
++..+++||+|+|+.++||+++++...++++++++++ |.+++......
T Consensus 123 l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 123 LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccC
Confidence 6666789999999999999996666677888999998 55555555443
No 29
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.43 E-value=1.7e-12 Score=133.95 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHhh--cCCCCEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 514 PLSKQRVEYALQHIK--ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 514 PL~~qR~e~Il~~L~--~~~~~rVLDIGCGtG~ll~~LAk~g-gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
|.+...+..+..... ..++.+|||+|||+|.++..+++.. .+..+|+|+|+|+.|++.|++++...
T Consensus 34 p~y~~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~----------- 102 (239)
T TIGR00740 34 PGYSNIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----------- 102 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----------
Confidence 334444444433221 2356799999999999999888753 24589999999999999999877431
Q ss_pred CCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 591 TDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 591 ~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
....++++.++|+.++++. .+|+|++..+++|+++++...++++++++|||| .++++.+.
T Consensus 103 ~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 103 HSEIPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred CCCCCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 1234789999999988764 589999999999998766778888999999999 77777553
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=2.2e-12 Score=137.24 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++.+|||+|||+|.++..|++.+ .+|+|+|+|+.+++.++++... .+. ++++..+|+...+.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~------------~~l-~v~~~~~D~~~~~~- 181 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEK------------ENL-NIRTGLYDINSASI- 181 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHH------------cCC-ceEEEEechhcccc-
Confidence 456799999999999999999876 7999999999999999887642 123 78888889877655
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
++.||+|++..+++|++++....+++++.++|+|| .+++..+
T Consensus 182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 57899999999999998777888888999999998 5455443
No 31
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.42 E-value=1.9e-12 Score=130.79 Aligned_cols=153 Identities=19% Similarity=0.232 Sum_probs=110.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
++.|.+.+.+ +.+|||+|||.|.++.+|.+.. ..+..|+|++++.+..|.+ ..+.++
T Consensus 4 ~~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~-------------------rGv~Vi 60 (193)
T PF07021_consen 4 LQIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVA-------------------RGVSVI 60 (193)
T ss_pred HHHHHHHcCC--CCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHH-------------------cCCCEE
Confidence 3456666664 7999999999999999998754 3889999999999988865 247789
Q ss_pred ECCccc-c-CCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCC----CCc
Q 004178 600 DGSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQED----DPD 672 (770)
Q Consensus 600 ~GDaed-l-p~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e----~pd 672 (770)
++|+++ + .+++++||.|+++.+|+++. .+. .+++++. +-| ..||+.||..+....-.+...|+.. .|.
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-~P~-~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy 135 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQAVR-RPD-EVLEEML---RVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPY 135 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHHhHh-HHH-HHHHHHH---HhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCC
Confidence 999876 3 46789999999999999998 333 4444554 456 8999999998765544443334321 122
Q ss_pred hhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEE
Q 004178 673 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 712 (770)
Q Consensus 673 e~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VE 712 (770)
+ | +..| +....|-.+|+++| ++.|+.|+
T Consensus 136 ~-----W--YdTP-Nih~~Ti~DFe~lc----~~~~i~I~ 163 (193)
T PF07021_consen 136 E-----W--YDTP-NIHLCTIKDFEDLC----RELGIRIE 163 (193)
T ss_pred c-----c--cCCC-CcccccHHHHHHHH----HHCCCEEE
Confidence 1 2 2233 33457999999554 67788884
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=2.2e-12 Score=145.69 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+++.+...++.+|||||||+|..+..|++..+ .+|+|+|+|+.+++.|+++.. ....+++|.+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~-------------~~~~~v~~~~ 320 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAI-------------GRKCSVEFEV 320 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhh-------------cCCCceEEEE
Confidence 4455555556678999999999999999987653 689999999999999987652 1234799999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+|+...+++++.||+|+|..+++|++ ++. .++++++++|||| .++++++.
T Consensus 321 ~d~~~~~~~~~~fD~I~s~~~l~h~~-d~~-~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 321 ADCTKKTYPDNSFDVIYSRDTILHIQ-DKP-ALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cCcccCCCCCCCEEEEEECCcccccC-CHH-HHHHHHHHHcCCCeEEEEEEec
Confidence 99998887778999999999999998 443 5556799999999 77777654
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=3.3e-12 Score=138.43 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=89.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
+..+...+...++++|||||||+|.++..++..+. ..|+|+|+|+.|+..++..-+ .. ....++.+.
T Consensus 110 ~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~-~~----------~~~~~v~~~ 176 (314)
T TIGR00452 110 WDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRK-LL----------DNDKRAILE 176 (314)
T ss_pred HHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHH-Hh----------ccCCCeEEE
Confidence 34456666677789999999999999998888762 579999999999987543211 10 122468888
Q ss_pred ECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 600 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.+++++++.. ..||+|+|.++++|++ ++.. ++++++++|||| .+++.+..
T Consensus 177 ~~~ie~lp~~-~~FD~V~s~gvL~H~~-dp~~-~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 177 PLGIEQLHEL-YAFDTVFSMGVLYHRK-SPLE-HLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred ECCHHHCCCC-CCcCEEEEcchhhccC-CHHH-HHHHHHHhcCCCCEEEEEEEE
Confidence 9999888764 5899999999999997 4444 455799999998 77777653
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=3.3e-12 Score=128.45 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
......+.+.+.+...++.+|||+|||+|.++..+++..++..+|+|+|+++.+++.|+++.. ....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------------~~~~ 69 (241)
T PRK08317 3 DFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------------GLGP 69 (241)
T ss_pred hHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------------CCCC
Confidence 334444556677777788999999999999999998876455799999999999999987631 2335
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++++..+|+...+...+.||+|++..+++|+. +. ..+.+++.++|||| .+++..+.
T Consensus 70 ~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~-~~-~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 70 NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLE-DP-ARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ceEEEecccccCCCCCCCceEEEEechhhccC-CH-HHHHHHHHHHhcCCcEEEEEecC
Confidence 79999999988887778999999999999998 33 35556799999999 77776664
No 35
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.41 E-value=1.1e-11 Score=125.45 Aligned_cols=175 Identities=22% Similarity=0.347 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhhc----CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 515 LSKQRVEYALQHIKE----SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 515 L~~qR~e~Il~~L~~----~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
+...|++++.+.+.. ..+.+|||+|||+|.++..+++.+ .+++|+|+++.+++.+++++..
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~------------ 89 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKK------------ 89 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHH------------
Confidence 556678888877763 347899999999999999988876 5799999999999999887642
Q ss_pred CCCccEEEEECCccccCCC-CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCC
Q 004178 591 TDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQE 668 (770)
Q Consensus 591 ~~~~~Vef~~GDaedlp~~-d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~ 668 (770)
.+..++++..+|+.+.+.. .+.||+|++.++++|+. +. ..+++.+.++|+|| .+++++++..+...+..... .
T Consensus 90 ~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~-~~-~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~--~- 164 (224)
T TIGR01983 90 DPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP-DP-QAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG--A- 164 (224)
T ss_pred cCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhCC-CH-HHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh--h-
Confidence 1222688999998876654 37899999999999998 33 35666799999998 88888888765444332110 0
Q ss_pred CCCchhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEE-EEEeeeC
Q 004178 669 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV-EFSGVGG 718 (770)
Q Consensus 669 e~pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~V-EF~GvG~ 718 (770)
++. ..+.+.....+....+..++.+|+ .+.||.+ +..+++-
T Consensus 165 ----~~~-~~~~~~~~~~~~~~~~~~~l~~~l----~~~G~~i~~~~~~~~ 206 (224)
T TIGR01983 165 ----EYI-LRIVPKGTHDWEKFIKPSELTSWL----ESAGLRVKDVKGLVY 206 (224)
T ss_pred ----hhh-hhcCCCCcCChhhcCCHHHHHHHH----HHcCCeeeeeeeEEe
Confidence 000 001111122233446778888555 6778877 4455443
No 36
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.41 E-value=2.5e-12 Score=131.06 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHHHhh-cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 514 PLSKQRVEYALQHIK-ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 514 PL~~qR~e~Il~~L~-~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
++.....+++.+.+. ..++.+|||+|||+|.++..|++.. +..+++|+|+|++|++.|++++
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~---------------- 87 (204)
T TIGR03587 25 SLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL---------------- 87 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------------
Confidence 344445555554443 2356799999999999999998864 3479999999999999998743
Q ss_pred CccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEe
Q 004178 593 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVST 650 (770)
Q Consensus 593 ~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIST 650 (770)
+++.+.++|+.+ ++.+++||+|++.++++|++++....++++++++++ +.++|..
T Consensus 88 -~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~~v~i~e 142 (204)
T TIGR03587 88 -PNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-RYILIAE 142 (204)
T ss_pred -CCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-cEEEEEE
Confidence 256788999888 777889999999999999987777788888999885 3555544
No 37
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.40 E-value=1.2e-11 Score=125.43 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=86.7
Q ss_pred HHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 004178 521 EYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 597 (770)
Q Consensus 521 e~Il~~L~~---~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Ve 597 (770)
+.+.+.+.. .++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|++++... ....++.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~-----------~~~~~i~ 115 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEA-----------GLAGNIT 115 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc-----------CCccCcE
Confidence 344444433 457899999999999999999876 67999999999999999876421 1114789
Q ss_pred EEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecC
Q 004178 598 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 652 (770)
Q Consensus 598 f~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN 652 (770)
+..+|+.. .++.||+|++..+++|++++....+.+.+.+.++++.++...+.
T Consensus 116 ~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 116 FEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred EEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 99999543 35789999999999999877777777778887765555444443
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=2e-12 Score=134.29 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=89.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+++.+...++.+|||||||+|.++..+++.. +..+|+|+|+|+.|++.|++++ .++.+..+
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~ 83 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------------PDCQFVEA 83 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEEC
Confidence 34455555678899999999999999999875 4479999999999999998743 36889999
Q ss_pred CccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
|+.++.. ..+||+|++..+++|++ +.. .+++++.++|||| .+++.+|+.
T Consensus 84 d~~~~~~-~~~fD~v~~~~~l~~~~-d~~-~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 84 DIASWQP-PQALDLIFANASLQWLP-DHL-ELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred chhccCC-CCCccEEEEccChhhCC-CHH-HHHHHHHHhcCCCcEEEEECCCC
Confidence 9987653 46899999999999998 443 4556799999998 777777653
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=2.4e-12 Score=132.99 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
++.+|||+|||+|.++..|++..+ .+|+|+|+|++|++.|+++ ..+.++|++++|+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~--~~v~gvD~S~~Ml~~a~~~--------------------~~~~~~d~~~lp~~d 108 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFK--YYVVALDYAENMLKMNLVA--------------------DDKVVGSFEALPFRD 108 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcC--CEEEEECCCHHHHHHHHhc--------------------cceEEechhhCCCCC
Confidence 478999999999999999988742 6999999999999999752 135689999999999
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCCE--EEEEecCC
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI--LIVSTPNY 653 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~--LIISTPN~ 653 (770)
++||+|++..+++|++ +. ...+++++|+|||.. +-++.|+.
T Consensus 109 ~sfD~v~~~~~l~~~~-d~-~~~l~e~~RvLkp~~~ile~~~p~~ 151 (226)
T PRK05785 109 KSFDVVMSSFALHASD-NI-EKVIAEFTRVSRKQVGFIAMGKPDN 151 (226)
T ss_pred CCEEEEEecChhhccC-CH-HHHHHHHHHHhcCceEEEEeCCCCc
Confidence 9999999999999997 43 345567999999973 33455553
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=2.9e-12 Score=136.42 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 004178 516 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 595 (770)
Q Consensus 516 ~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~ 595 (770)
....++.+.+.+...++.+|||||||.|.+++++|+..+ .+|+|+++|+++.+.+++++.. ++...+
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~-----------~gl~~~ 123 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAA-----------RGLEDN 123 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHH-----------cCCCcc
Confidence 345567788888889999999999999999999999863 8999999999999999998753 223348
Q ss_pred EEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 596 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 596 Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
+++...|..+++.. ||.||+.+++||+..+....|++.+.++|+|| .+++
T Consensus 124 v~v~l~d~rd~~e~---fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 124 VEVRLQDYRDFEEP---FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred cEEEeccccccccc---cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEE
Confidence 99999998887643 99999999999999877888999999999998 4433
No 41
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2e-12 Score=135.08 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=151.0
Q ss_pred EEecccccccceec--ccceeeeccCCcccccceeeeeeccccccceecccCCchhhhhhccCCccchhhcccccccccc
Q 004178 413 LVIEGETMKELLES--REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLE 490 (770)
Q Consensus 413 l~~~~~~~~~l~e~--~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elflaa~~~~~~diS~Ls~~~~~Le 490 (770)
|++++++++|+++. ..+||++.|+ +++.+++-+..|...+++ +.
T Consensus 9 lL~~~~~~~~lv~~~~~~~~~t~~G~-------------------------i~~~~vigk~~G~~i~s~---------~G 54 (256)
T COG2519 9 LLTDERGRRYLVRLTPGEKFHTDLGI-------------------------IPHDEVIGKPYGEVIKSH---------LG 54 (256)
T ss_pred EEEecCCcEEEEeccCCcccccceee-------------------------echhhhcCCCCCceEEee---------CC
Confidence 56788999999995 6999999999 999999998888887666 56
Q ss_pred eeeeecccCCChhhhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHH
Q 004178 491 YHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570 (770)
Q Consensus 491 y~i~lL~v~ep~eeR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe 570 (770)
..+.+++++..+.-+- -..-..++|++...+|+..++..++.+|||.|.|+|.++.+|++..++.++|+.+|+.++.++
T Consensus 55 ~~f~vl~p~~~d~~~~-~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k 133 (256)
T COG2519 55 VKFYVLKPTPEDYLLS-MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAK 133 (256)
T ss_pred ceEEEeCCCHHHHHHh-CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHH
Confidence 5677777666442110 111234788999999999999999999999999999999999987778899999999999999
Q ss_pred HHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 571 RAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 571 ~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
.|+++++.. ....++++..+|+.+.-+++ .||+|+. -++ +++..+. .+...|||| .+++.
T Consensus 134 ~A~~Nl~~~-----------~l~d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp-~PW~~le-~~~~~Lkpgg~~~~y 194 (256)
T COG2519 134 TARENLSEF-----------GLGDRVTLKLGDVREGIDEE-DVDAVFL-----DLP-DPWNVLE-HVSDALKPGGVVVVY 194 (256)
T ss_pred HHHHHHHHh-----------ccccceEEEecccccccccc-ccCEEEE-----cCC-ChHHHHH-HHHHHhCCCcEEEEE
Confidence 999999753 12234999999998877765 9999843 344 5665555 699999999 88999
Q ss_pred ecCCc
Q 004178 650 TPNYE 654 (770)
Q Consensus 650 TPN~e 654 (770)
+|+.+
T Consensus 195 ~P~ve 199 (256)
T COG2519 195 SPTVE 199 (256)
T ss_pred cCCHH
Confidence 99854
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.37 E-value=1.2e-11 Score=124.05 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=104.1
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+.+.+. ++.+|||+|||+|.++..+++..+ ..++|+|+++++++.|++ .++++.+
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~-------------------~~~~~~~ 61 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA-------------------RGVNVIQ 61 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH-------------------cCCeEEE
Confidence 34445444 467999999999999998876542 578999999999998854 1367888
Q ss_pred CCccc-c-CCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCchhhhhc
Q 004178 601 GSITV-F-DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQ 678 (770)
Q Consensus 601 GDaed-l-p~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~ 678 (770)
+|+.+ + +..+++||+|+|..++||++ +.. .+++++.+.++ .++++.||..+..........+.. +.. ...
T Consensus 62 ~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-d~~-~~l~e~~r~~~--~~ii~~p~~~~~~~~~~~~~~~~~--~~~--~~~ 133 (194)
T TIGR02081 62 GDLDEGLEAFPDKSFDYVILSQTLQATR-NPE-EILDEMLRVGR--HAIVSFPNFGYWRVRWSILTKGRM--PVT--GEL 133 (194)
T ss_pred EEhhhcccccCCCCcCEEEEhhHhHcCc-CHH-HHHHHHHHhCC--eEEEEcCChhHHHHHHHHHhCCcc--ccC--CCC
Confidence 88865 3 35567899999999999998 433 44456777665 456778886544322111111110 000 000
Q ss_pred cccccCCCcccccCHHHHHHHHHHHHHHCCcEEEE
Q 004178 679 SCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEF 713 (770)
Q Consensus 679 ~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF 713 (770)
...+.+..|..+++.+++. ++.+++||.+..
T Consensus 134 ~~~~~~~~~~~~~s~~~~~----~ll~~~Gf~v~~ 164 (194)
T TIGR02081 134 PYDWYNTPNIHFCTIADFE----DLCGELNLRILD 164 (194)
T ss_pred CccccCCCCcccCcHHHHH----HHHHHCCCEEEE
Confidence 1112233455678999999 566899999843
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.37 E-value=2e-11 Score=124.87 Aligned_cols=175 Identities=20% Similarity=0.288 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
++...|++++...+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|++++.. ..
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~-------------~~ 94 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE-------------SG 94 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH-------------cC
Confidence 4566788888888776778899999999999999998876 7899999999999999887632 11
Q ss_pred ccEEEEECCccccC-CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCC
Q 004178 594 KSAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDP 671 (770)
Q Consensus 594 ~~Vef~~GDaedlp-~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~p 671 (770)
..+++..+++.+.+ ...+.||+|++..+++|++ +. ..+++.+.++|+|| .+++++++........... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~-~~-~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~-------~ 165 (233)
T PRK05134 95 LKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVP-DP-ASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIV-------G 165 (233)
T ss_pred CceEEEecCHHHhhhhcCCCccEEEEhhHhhccC-CH-HHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHh-------h
Confidence 25788888887765 2347899999999999998 33 35566799999998 8888887754322211110 0
Q ss_pred chhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEE-EEeeeC
Q 004178 672 DEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE-FSGVGG 718 (770)
Q Consensus 672 de~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VE-F~GvG~ 718 (770)
.++. ..+.......+...++..++. .++.++||.+. ..|...
T Consensus 166 ~~~~-~~~~~~~~~~~~~~~~~~~~~----~~l~~~Gf~~v~~~~~~~ 208 (233)
T PRK05134 166 AEYV-LRMLPKGTHDYKKFIKPSELA----AWLRQAGLEVQDITGLHY 208 (233)
T ss_pred HHHH-hhhcCcccCchhhcCCHHHHH----HHHHHCCCeEeeeeeEEe
Confidence 0010 001111112334456888887 45578999874 445443
No 44
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=5.3e-12 Score=128.02 Aligned_cols=124 Identities=17% Similarity=0.303 Sum_probs=93.5
Q ss_pred CCchHHHH-HHHHHHH-HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC
Q 004178 511 FSPPLSKQ-RVEYALQ-HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV 588 (770)
Q Consensus 511 F~PPL~~q-R~e~Il~-~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~ 588 (770)
|....|++ |+..++. .+....-.++||+|||.|.++..|+.++ .+++++|+++.+++.|++++.
T Consensus 21 ~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~----------- 86 (201)
T PF05401_consen 21 FETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA----------- 86 (201)
T ss_dssp TTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT-----------
T ss_pred CCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC-----------
Confidence 44456666 4555554 4666667899999999999999999998 899999999999999999873
Q ss_pred CCCCCccEEEEECCccccCCCCCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 589 PCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 589 pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+.++|+|.++|+.+..+ .+.||+||++++++++.+ +++..+...+...|+|| .+++.+..
T Consensus 87 ---~~~~V~~~~~dvp~~~P-~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 87 ---GLPHVEWIQADVPEFWP-EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp ---T-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ---CCCCeEEEECcCCCCCC-CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34689999999987654 589999999999999985 57788888899999998 67666643
No 45
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.36 E-value=5.4e-12 Score=127.34 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
..+.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.+++++. +++.+..+|+.+.++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~~~ 95 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLPLE 95 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCCCC
Confidence 345799999999999999999886 45789999999999999987541 3688999999998877
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCch
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEY 655 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ef 655 (770)
++.||+|++..+++|+. +. ..+++++.++|+|| .+++.+++...
T Consensus 96 ~~~fD~vi~~~~l~~~~-~~-~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 96 DSSFDLIVSNLALQWCD-DL-SQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CCceeEEEEhhhhhhcc-CH-HHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 78999999999999997 33 35666899999998 88888877543
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=1.7e-11 Score=111.67 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
...+.+.+....+.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++.. .+..++++.
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~~~~~ 74 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARR------------FGVSNIVIV 74 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHH------------hCCCceEEE
Confidence 3445566666667899999999999999999875 347999999999999999887642 123478999
Q ss_pred ECCccc-cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 600 DGSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 600 ~GDaed-lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.+|+.. .+.....||+|++....+++ ..+.+.+.+.|||| .++++.
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLL-----QEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhH-----HHHHHHHHHHcCCCCEEEEEe
Confidence 998765 33334689999997765443 36667899999998 776654
No 47
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=2.1e-11 Score=123.87 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=85.1
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 612 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~s 612 (770)
++|||||||+|.++..+++.. +..+|+|+|+|+++++.|++++.. .+...++++..+|+...+.+ +.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~-----------~gl~~~i~~~~~d~~~~~~~-~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRA-----------LGLQGRIRIFYRDSAKDPFP-DT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHh-----------cCCCcceEEEecccccCCCC-CC
Confidence 479999999999999998875 347899999999999999987742 12234789999998766543 58
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 613 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 613 FDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
||+|++.++++|+. + ...+++++.++|||| .+++..+.
T Consensus 68 fD~I~~~~~l~~~~-~-~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEVIHHIK-D-KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHHHHhCC-C-HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 99999999999998 3 346667899999998 77776654
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.33 E-value=8.7e-12 Score=126.52 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=87.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+++.++..++.++||+|||.|+.+.+||+.| ..|+++|+|+.+++.+++.... .+ .+|+..+.|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~------------~~-l~i~~~~~D 85 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE------------EG-LDIRTRVAD 85 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH------------TT--TEEEEE-B
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh------------cC-ceeEEEEec
Confidence 4455566678999999999999999999998 8999999999999998765432 12 359999999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+.+..+. ..||+|++..|++|++++....+.+.+...++|| +.++.+
T Consensus 86 l~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 86 LNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred chhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9888775 6899999999999999998889999999999998 545433
No 49
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=1.1e-11 Score=130.20 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=88.1
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+|||+|||+|..+..+++..++..+|+|+|+++.|++.|+++... .+..++++..+|+++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~------------~g~~~v~~~~~d~~~l~ 141 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK------------AGYTNVEFRLGEIEALP 141 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH------------cCCCCEEEEEcchhhCC
Confidence 345688999999999998877776544456899999999999999987642 23457899999999988
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+.+++||+|++..+++|.+ +.. .++++++++|||| .++++.
T Consensus 142 ~~~~~fD~Vi~~~v~~~~~-d~~-~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 142 VADNSVDVIISNCVINLSP-DKE-RVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCCCceeEEEEcCcccCCC-CHH-HHHHHHHHHcCCCcEEEEEE
Confidence 8778999999999999987 333 4556799999999 666654
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.31 E-value=2.1e-11 Score=135.38 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
...+..+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+++++.|+++.. + ..+
T Consensus 153 ~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--------------~-l~v 215 (383)
T PRK11705 153 EAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--------------G-LPV 215 (383)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--------------c-CeE
Confidence 34456677777777889999999999999999988643 699999999999999988652 1 247
Q ss_pred EEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
++..+|..++ ++.||+|++.++++|+.......+++++.++|||| .+++.+.
T Consensus 216 ~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 216 EIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8888887765 36899999999999998666667778899999998 6666554
No 51
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=3.3e-11 Score=122.39 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
...+++.+...++.+|||+|||+|..+..+++..++..+|+|+|+++++++.|++++... ....++++.
T Consensus 61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-----------~~~~~v~~~ 129 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-----------GYWGVVEVY 129 (205)
T ss_pred HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 345556666667889999999999999988876534479999999999999999887531 112368999
Q ss_pred ECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 600 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
.+|+.+.......||+|++..+++|++ +++.+.|+|| .+++...
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ECCcccCCccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEEc
Confidence 999987655567899999999998887 2477899998 6666543
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=5.6e-13 Score=118.71 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=59.2
Q ss_pred EEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--CCCc
Q 004178 536 VDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGF 613 (770)
Q Consensus 536 LDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d~sF 613 (770)
||||||+|.++..+++.. +..+++|+|+|+.|++.|++++... ...+......+..+.... .++|
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~f 67 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAEL------------GNDNFERLRFDVLDLFDYDPPESF 67 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHC------------T---EEEEE--SSS---CCC----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------------CCcceeEEEeecCChhhccccccc
Confidence 799999999999999885 5689999999999998888876532 222333344333332211 2599
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHcccCCE
Q 004178 614 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 645 (770)
Q Consensus 614 DlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~ 645 (770)
|+|++..++||++ +...+++++.++||||.
T Consensus 68 D~V~~~~vl~~l~--~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 68 DLVVASNVLHHLE--DIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp SEEEEE-TTS--S---HHHHHHHHTTT-TSS-
T ss_pred ceehhhhhHhhhh--hHHHHHHHHHHHcCCCC
Confidence 9999999999995 44466678999999994
No 53
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.30 E-value=3.8e-11 Score=131.41 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=84.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
.+.+|||+|||+|.++..+++.. +..+|+|+|+|++|++.|+++.. ..++++..+|++++++.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~---------------~~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEP---------------LKECKIIEGDAEDLPFPT 176 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhh---------------ccCCeEEeccHHhCCCCC
Confidence 56799999999999998888764 23789999999999999987541 236889999999988888
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+.||+|++..+++|+++ .. .++++++++|||| .+++..+
T Consensus 177 ~sFDvVIs~~~L~~~~d-~~-~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 177 DYADRYVSAGSIEYWPD-PQ-RGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CceeEEEEcChhhhCCC-HH-HHHHHHHHhcCCCcEEEEEEe
Confidence 89999999999999984 33 4556799999998 6655544
No 54
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=2.8e-11 Score=124.40 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=87.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC-
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR- 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~- 609 (770)
++.+|||+|||.|..+..||+++ .+|+|+|+|+.+++.+.+...............+....+|+++++|+.+++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 56799999999999999999998 89999999999999864421100000000000001134799999999887753
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
...||.|+-..+++|++++....+.+.+.++|||| .+++.+-
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 35799999999999999888888999999999998 5555443
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.28 E-value=4.2e-11 Score=122.17 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 004178 518 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 597 (770)
Q Consensus 518 qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Ve 597 (770)
..+..+.+.+...++.+|||+|||+|.++..|++..++..+|+|+|+++++++.|++++.. .+..+++
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~------------~g~~~v~ 131 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK------------LGLDNVI 131 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------CCCCCeE
Confidence 3445666777777889999999999999999998764446799999999999999998753 2346799
Q ss_pred EEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 598 LFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 598 f~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+..+|+.+.......||+|++.....+++ +.+.+.|+|| .+++..
T Consensus 132 ~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 132 VIVGDGTQGWEPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred EEECCcccCCcccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 99999987655557899999988887776 2467789998 666644
No 56
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.28 E-value=4.8e-11 Score=124.61 Aligned_cols=120 Identities=12% Similarity=0.103 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCC-----ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL-----EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~-----~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
-+..+..+.+.++.++||++||+|..+..+.++.+.. .+|+++||++.||..++++..+.. -....
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~---------l~~~~ 159 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP---------LKASS 159 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC---------CCcCC
Confidence 3445566677788999999999999999998876332 799999999999999998764311 12234
Q ss_pred cEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
++.|..+|++++|+++.+||+.+..+-|+.++ +..+. +++++|+|||| .+.+-.
T Consensus 160 ~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~-l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 160 RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKA-LREAYRVLKPGGRFSCLE 214 (296)
T ss_pred ceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHH-HHHHHHhcCCCcEEEEEE
Confidence 69999999999999999999999999999998 44444 45799999999 554433
No 57
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=4.6e-11 Score=122.18 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+.....+++.+...++.+|||||||+|.++..+++..++..+|+|+|+++++++.|++++.. .+..++
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~------------~g~~~v 129 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK------------LGYDNV 129 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCCe
Confidence 33444666777777889999999999999998888764557999999999999999998752 234579
Q ss_pred EEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
++.++|+.......+.||+|++...+++++ +.+.+.|||| .+++..
T Consensus 130 ~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 130 EVIVGDGTLGYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCcccCCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999999887666668899999998887765 2466789998 655543
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=1.2e-11 Score=125.38 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 513 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 513 PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
|++...+..+. +.+.. .+.+|||+|||+|.++..+++.. +..+|+|+|++++|++.|++++.. .+
T Consensus 24 ~~~~~~~~~~~-~~~~~-~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~------------~~ 88 (202)
T PRK00121 24 PRLSPAPLDWA-ELFGN-DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEE------------EG 88 (202)
T ss_pred hhhcCCCCCHH-HHcCC-CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHH------------cC
Confidence 44444444444 23333 57899999999999999998875 457899999999999999987642 23
Q ss_pred CccEEEEECCc-cccC--CCCCCccEEEeccccccCC------hhHHHHHHHHHHHcccCC-EEEEEecCCchh
Q 004178 593 VKSAVLFDGSI-TVFD--SRLHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 656 (770)
Q Consensus 593 ~~~Vef~~GDa-edlp--~~d~sFDlVVc~eVLEHL~------~d~~~~fleeI~rvLKPG-~LIISTPN~efN 656 (770)
..++++.++|+ +.++ ...+.||+|++.....+.. ......+++++.++|||| .+++.+++..+-
T Consensus 89 ~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~ 162 (202)
T PRK00121 89 LTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYA 162 (202)
T ss_pred CCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHH
Confidence 35799999999 7665 5567899999876543221 111345667899999998 888888886544
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.27 E-value=3e-11 Score=127.76 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCCEEEEEcCccch----HHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhhhh--hcc-----cccCCCCC----
Q 004178 531 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHSKL--SKK-----LDAAVPCT---- 591 (770)
Q Consensus 531 ~~~rVLDIGCGtG~----ll~~LAk~gg----p~~~VvGVDISeemLe~ArkrL~~~~--s~~-----~~~l~pr~---- 591 (770)
++.+|+|+|||+|. ++..|++..+ ...+|+|+|+|+.||+.|++.+-... ... ..+.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 4545555431 13689999999999999987431100 000 00000000
Q ss_pred ----CCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 592 ----DVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 592 ----~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
...+|+|.++|+.+.+++.+.||+|+|.++++|++++....++++++++|+|| .+++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 11368999999999877778999999999999999777777888899999999 55553
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=6.8e-11 Score=118.52 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=78.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
++.+|||+|||+|.++..++... +..+|+|+|+++.|++.++++++. .+..+++++++|+.++.. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~------------~~~~~i~~i~~d~~~~~~-~ 107 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAE------------LGLNNVEIVNGRAEDFQH-E 107 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------hCCCCeEEEecchhhccc-c
Confidence 47899999999999999888665 457899999999999999887642 233579999999988743 5
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+.||+|++.. +++++ .+.+.+.++|+|| .+++...
T Consensus 108 ~~fD~I~s~~-~~~~~-----~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 108 EQFDVITSRA-LASLN-----VLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred CCccEEEehh-hhCHH-----HHHHHHHHhcCCCCEEEEEcC
Confidence 7899999876 54443 4556689999998 6555543
No 61
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.24 E-value=2e-11 Score=122.04 Aligned_cols=168 Identities=19% Similarity=0.233 Sum_probs=123.9
Q ss_pred hccccccccccee-eeecccCCChhhhhhhhcCCchHHHHHHHHHHHHhh----cCCCCEEEEEcCccchHHHHHhcCCC
Q 004178 480 SLLSSRACCLEYH-ITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIK----ESCATTLVDFGCGSGSLLDSLLDYPT 554 (770)
Q Consensus 480 S~Ls~~~~~Ley~-i~lL~v~ep~eeR~e~~~F~PPL~~qR~e~Il~~L~----~~~~~rVLDIGCGtG~ll~~LAk~gg 554 (770)
|.|..++.|-+-| ..+.+++++..+ ....|.........+|+.+.+. .....+|||+|||.|.++..|++.+
T Consensus 13 S~LGtK~yWD~~Y~~El~Nfr~hgd~--GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg- 89 (227)
T KOG1271|consen 13 SKLGTKSYWDAAYELELTNFREHGDE--GEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG- 89 (227)
T ss_pred cccchHHHHHHHHHHHHhhcccCCCc--cceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc-
Confidence 5677777777754 344455554432 2456777777777888888765 2334599999999999999999876
Q ss_pred CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc-EEEEECCccccCCCCCCccEEEeccccccCCh------
Q 004178 555 ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEE------ 627 (770)
Q Consensus 555 p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~-Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~------ 627 (770)
-...++|+|.|+.+++.|+...+ +.+.++ |+|.+.|+.+.++..+.||+|+--+++..+..
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe------------~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~ 157 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAE------------RDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPV 157 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHH------------hcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcc
Confidence 33569999999999999976443 234444 99999999998888899999988666655431
Q ss_pred hHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhh
Q 004178 628 DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKS 662 (770)
Q Consensus 628 d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~ 662 (770)
..+..+...+.++|+|| .++|+..|.....+...+
T Consensus 158 ~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f 193 (227)
T KOG1271|consen 158 GRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF 193 (227)
T ss_pred cceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence 22345666788999998 999999998877665543
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=5e-11 Score=134.80 Aligned_cols=111 Identities=10% Similarity=0.188 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
..+++.+...++.+|||+|||+|.++..|++.. .+|+|+|+++.|++.+++.. ...+++++++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--------------~~~~~i~~~~ 89 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--------------GHYKNVKFMC 89 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--------------ccCCceEEEE
Confidence 345566665667899999999999999999886 79999999999999876522 1235799999
Q ss_pred CCccc--cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 601 GSITV--FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 601 GDaed--lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
+|+.. +++++++||+|+|..+++|++++....+++++.++|||| .+++
T Consensus 90 ~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 90 ADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred ecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 99863 556678999999999999999766778888899999999 5555
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.23 E-value=2.1e-11 Score=124.80 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=95.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
++..+......+|.|+|||+|..+..|+++. |...|+|+|-|++||+.|++++ ++++|..+|
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aD 83 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEAD 83 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------------CCCceeccc
Confidence 4456677788999999999999999999998 7899999999999999997754 689999999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
+.+...+ ..+|+++++.++++++ |....|. .+...|.|| ++.+..|+.
T Consensus 84 l~~w~p~-~~~dllfaNAvlqWlp-dH~~ll~-rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 84 LRTWKPE-QPTDLLFANAVLQWLP-DHPELLP-RLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred HhhcCCC-Cccchhhhhhhhhhcc-ccHHHHH-HHHHhhCCCceEEEECCCc
Confidence 9987653 7899999999999999 5555555 599999999 888988874
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.20 E-value=2.4e-10 Score=122.58 Aligned_cols=165 Identities=17% Similarity=0.237 Sum_probs=111.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 519 R~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
..+.+...+....+++|||||||+|+++..++..++ ..|+|+|.+....-..+. ++... +....+.+
T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~-i~~~l----------g~~~~~~~ 169 (315)
T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEA-IKHFL----------GQDPPVFE 169 (315)
T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHH-HHHHh----------CCCccEEE
Confidence 344566777778899999999999999999999874 789999999987766432 21111 11123444
Q ss_pred EECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCch-hhh
Q 004178 599 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDE-KTQ 676 (770)
Q Consensus 599 ~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde-~~~ 676 (770)
.-..+++++. .+.||+|+|.+||.|.. ++...+. ++...|+|| .+++.|---+-..- ..+ .|.+ |.+
T Consensus 170 lplgvE~Lp~-~~~FDtVF~MGVLYHrr-~Pl~~L~-~Lk~~L~~gGeLvLETlvi~g~~~-~~L-------~P~~rYa~ 238 (315)
T PF08003_consen 170 LPLGVEDLPN-LGAFDTVFSMGVLYHRR-SPLDHLK-QLKDSLRPGGELVLETLVIDGDEN-TVL-------VPEDRYAK 238 (315)
T ss_pred cCcchhhccc-cCCcCEEEEeeehhccC-CHHHHHH-HHHHhhCCCCEEEEEEeeecCCCc-eEE-------ccCCcccC
Confidence 4457788887 78999999999999998 6776665 599999998 77776653221110 011 1111 221
Q ss_pred hccccccCCCcccccCHHHHHHHHHHHHHHCCc-EEEEEeeeC
Q 004178 677 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNY-SVEFSGVGG 718 (770)
Q Consensus 677 ~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY-~VEF~GvG~ 718 (770)
.+.-.|--|...+..|+ ++.|| .|++..+..
T Consensus 239 -------m~nv~FiPs~~~L~~wl----~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 239 -------MRNVWFIPSVAALKNWL----ERAGFKDVRCVDVSP 270 (315)
T ss_pred -------CCceEEeCCHHHHHHHH----HHcCCceEEEecCcc
Confidence 12223556899999998 56677 566665554
No 65
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.20 E-value=1.9e-10 Score=116.17 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=78.8
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 611 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~ 611 (770)
+.+|||+|||+|..+..+++.. +..+|+|+|++++|++.|++++.. .+..++++.++|+.+++. .+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~------------~~l~~i~~~~~d~~~~~~-~~ 111 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAE------------LGLKNVTVVHGRAEEFGQ-EE 111 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHH------------cCCCCEEEEeccHhhCCC-CC
Confidence 7899999999999999888754 458999999999999999987753 233469999999998876 67
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
+||+|++... . ....+.+.++++|||| .+++.
T Consensus 112 ~fDlV~~~~~-~-----~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 112 KFDVVTSRAV-A-----SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CccEEEEccc-c-----CHHHHHHHHHHhcCCCeEEEEE
Confidence 9999999752 1 2345667899999999 55544
No 66
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.20 E-value=2.4e-10 Score=115.81 Aligned_cols=115 Identities=16% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+...+...++.+|||+|||+|.++..+++..+...+++|+|+++.+++.+++++.. .....++++..+|
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~~~~~~~~~~d 111 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-----------LGLSGNVEFVQGD 111 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-----------cccccCeEEEecc
Confidence 34444445678999999999999999988763358999999999999999887632 1123468999999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+.+.+...+.||+|++..+++|+. +. ..+++.+.++|+|| .+++..
T Consensus 112 ~~~~~~~~~~~D~I~~~~~l~~~~-~~-~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 112 AEALPFPDNSFDAVTIAFGLRNVP-DI-DKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCCCCCCCccEEEEecccccCC-CH-HHHHHHHHHhccCCcEEEEEE
Confidence 988877678899999999999998 33 35566799999998 555543
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=2.5e-10 Score=113.68 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+.-...+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++++.. .+..++
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~------------~~~~~i 83 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQR------------FGCGNI 83 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------hCCCCe
Confidence 3333455566766678899999999999999998875 457999999999999999987642 123468
Q ss_pred EEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
++..+|+.. +. ...||+|++....+++. .+.+.+.+.|+|| .+++..
T Consensus 84 ~~~~~d~~~-~~-~~~~D~v~~~~~~~~~~-----~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 84 DIIPGEAPI-EL-PGKADAIFIGGSGGNLT-----AIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEEecCchh-hc-CcCCCEEEECCCccCHH-----HHHHHHHHhcCCCeEEEEEE
Confidence 999998743 22 35799999987765543 4556789999999 666543
No 68
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.18 E-value=3.8e-10 Score=113.11 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+.+.+...++.+|||+|||.|.++..+++..+...+++|+|+++.+++.+++++. ...++++..+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------~~~~i~~~~~ 95 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------LPLNIEFIQA 95 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------------cCCCceEEec
Confidence 34455555578899999999999999999887323689999999999999988652 2246899999
Q ss_pred CccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
|+.+.++..+.||+|++..+++|+. + ...+++.+.+.|+|| .+++..
T Consensus 96 d~~~~~~~~~~~D~i~~~~~~~~~~-~-~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 96 DAEALPFEDNSFDAVTIAFGLRNVT-D-IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred chhcCCCCCCcEEEEEEeeeeCCcc-c-HHHHHHHHHHHcCCCcEEEEEE
Confidence 9998877677899999999999988 3 345667899999998 655543
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.18 E-value=1.6e-10 Score=134.64 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=87.5
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++... ...++.+.++|+.+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~-------------~g~~ie~I~gDa~dLp 480 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQN-------------EGRSWNVIKGDAINLS 480 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhh-------------cCCCeEEEEcchHhCc
Confidence 33457899999999999998888765 568999999999999999886531 1246889999998876
Q ss_pred --CCCCCccEEEeccccccCC-----------hhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 608 --SRLHGFDIGTCLEVIEHME-----------EDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 608 --~~d~sFDlVVc~eVLEHL~-----------~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+++++||+|++..++||+. .+....++++++++|||| .+++..
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5678999999999998762 235567777899999998 666654
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=2.8e-10 Score=117.38 Aligned_cols=115 Identities=8% Similarity=0.055 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh--hhcccccCCCCCCCccEEEEECCccccC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK--LSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~--~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++.+|||+|||.|..+..|++++ .+|+|||+|+.+++.+.+..... .....+. -.....+|+++++|+.+++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~--~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAENGLTPQTRQSGEF--EHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHHcCCCccccccccc--cccccCceEEEECcccCCC
Confidence 346799999999999999999988 89999999999999875321100 0000000 0012357999999999886
Q ss_pred CCC-CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 608 SRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 608 ~~d-~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
..+ ..||+|+-..+++|++++....+.+.+.++|+|| .+++.
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 543 6899999999999999888899999999999998 44443
No 71
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.16 E-value=7.1e-10 Score=109.50 Aligned_cols=127 Identities=17% Similarity=0.237 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 004178 518 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 597 (770)
Q Consensus 518 qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Ve 597 (770)
.--..+++.+......+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++.. .+..+++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~------------n~~~~v~ 84 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER------------NGLENVE 84 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH------------TTCTTEE
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh------------cCccccc
Confidence 334466666666678899999999999999999987 456799999999999999998753 2333499
Q ss_pred EEECCccccCCCCCCccEEEeccccccCCh---hHHHHHHHHHHHcccCC-EE-EEEecCCchhHH
Q 004178 598 LFDGSITVFDSRLHGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR-IL-IVSTPNYEYNAI 658 (770)
Q Consensus 598 f~~GDaedlp~~d~sFDlVVc~eVLEHL~~---d~~~~fleeI~rvLKPG-~L-IISTPN~efN~l 658 (770)
++..|+.+... ...||+|+|+=-++.-.. +....|.+...++|||| .+ ++......+...
T Consensus 85 ~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~ 149 (170)
T PF05175_consen 85 VVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL 149 (170)
T ss_dssp EEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH
T ss_pred ccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH
Confidence 99999866443 589999999866544442 34677788899999998 44 344434334433
No 72
>PLN03075 nicotianamine synthase; Provisional
Probab=99.15 E-value=5e-10 Score=120.42 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCccchH-HHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 530 SCATTLVDFGCGSGSL-LDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~l-l~~LA-k~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
..+++|+|||||.|.+ +..++ ... +..+++|+|+++++++.|++.+.+. .....+++|.++|+.+..
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~-p~~~~~giD~d~~ai~~Ar~~~~~~----------~gL~~rV~F~~~Da~~~~ 190 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHL-PTTSFHNFDIDPSANDVARRLVSSD----------PDLSKRMFFHTADVMDVT 190 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHhhhc----------cCccCCcEEEECchhhcc
Confidence 3789999999998844 33333 343 5689999999999999999877421 122357999999998865
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
...+.||+|+|. +++++..++...+++++.+.|+|| .+++.+.
T Consensus 191 ~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 191 ESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 446789999999 999996556667777899999999 7777653
No 73
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.13 E-value=6.2e-10 Score=112.99 Aligned_cols=108 Identities=12% Similarity=0.110 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
.++.+.+...++.+|||+|||+|.++..|++.. .+|+++|+++++++.|++++.. .+..++++..
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~------------~~~~~v~~~~ 132 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ------------LGLHNVSVRH 132 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH------------CCCCceEEEE
Confidence 345566677778999999999999999888876 5899999999999999988753 2345699999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+|..+.....+.||+|++...+++++ +.+.+.|+|| .+++...
T Consensus 133 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 133 GDGWKGWPAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcccCCCcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 99866444457899999998887775 2467799998 6666655
No 74
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.12 E-value=6.3e-10 Score=110.09 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=86.0
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++++++.|++++.. .+ .++++..+|
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~------------~~-~~~~~~~~d 74 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKL------------NN-VGLDVVMTD 74 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHH------------cC-CceEEEEcc
Confidence 3344555567899999999999999999887 4899999999999999987742 12 368899999
Q ss_pred ccccCCCCCCccEEEeccccccCChh-------------------HHHHHHHHHHHcccCC-EEEEEecC
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEED-------------------EASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d-------------------~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+.+.. .++||+|++.-.+++.+++ ....+++++.++|||| .+++..+.
T Consensus 75 ~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 75 LFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred ccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 87654 3589999999887766531 1346777899999998 66665543
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.12 E-value=2.6e-10 Score=114.83 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=87.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC---
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp--- 607 (770)
...+|||||||+|.++..+++.. +...|+|+|+++.+++.|++++.. .+..+++++++|+.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~------------~~l~ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANK------------LGLKNLHVLCGDANELLDKF 82 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHH------------hCCCCEEEEccCHHHHHHhh
Confidence 45699999999999999999876 568999999999999999887642 23458999999997654
Q ss_pred CCCCCccEEEeccccccCChh------HHHHHHHHHHHcccCC-EEEEEecCCchhH
Q 004178 608 SRLHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNA 657 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d------~~~~fleeI~rvLKPG-~LIISTPN~efN~ 657 (770)
...+.+|.|++.....|.... ....+++++.++|||| .+++.|.+..+..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~ 139 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFE 139 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 334689999887544332210 0135677899999998 8888888876443
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.11 E-value=8.1e-10 Score=118.37 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+.+.+...+..+|||||||+|.++..+++.. |..+++++|. +.+++.|++++.+. +...++++..+
T Consensus 140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~-----------gl~~rv~~~~~ 206 (306)
T TIGR02716 140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEK-----------GVADRMRGIAV 206 (306)
T ss_pred HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhC-----------CccceEEEEec
Confidence 45555566677899999999999999999887 5679999997 78999998876431 22347999999
Q ss_pred CccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
|+.+.+.+ .+|+|++..++|++.++....+++++++.|+|| .++|..
T Consensus 207 d~~~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 207 DIYKESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CccCCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 98765543 479999999999998666677888899999998 666653
No 77
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.2e-10 Score=112.88 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=110.7
Q ss_pred cCCchhhhhhccCCccchhhcccccccccceeeeecccCCChhhhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcC
Q 004178 461 ELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGC 540 (770)
Q Consensus 461 ~l~p~elflaa~~~~~~diS~Ls~~~~~Ley~i~lL~v~ep~eeR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGC 540 (770)
..-|+|+|+++.-.+ +.|....+... ...+.+.|..- ..+++.+...++.+||||||
T Consensus 25 ~~vPRe~FVp~~~~~-------------~AY~d~~lpi~-------~gqtis~P~~v---A~m~~~L~~~~g~~VLEIGt 81 (209)
T COG2518 25 LAVPRELFVPAAYKH-------------LAYEDRALPIG-------CGQTISAPHMV---ARMLQLLELKPGDRVLEIGT 81 (209)
T ss_pred HhCCHHhccCchhhc-------------ccccCCcccCC-------CCceecCcHHH---HHHHHHhCCCCCCeEEEECC
Confidence 345888888887655 45554444322 11222333333 34557778888999999999
Q ss_pred ccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEecc
Q 004178 541 GSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLE 620 (770)
Q Consensus 541 GtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~e 620 (770)
|+|+.+..|++.. .+|+.+|+.++..+.|++++.. -+..||.+.++|...-..+...||.|+...
T Consensus 82 GsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~------------lg~~nV~v~~gDG~~G~~~~aPyD~I~Vta 146 (209)
T COG2518 82 GSGYQAAVLARLV---GRVVSIERIEELAEQARRNLET------------LGYENVTVRHGDGSKGWPEEAPYDRIIVTA 146 (209)
T ss_pred CchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHH------------cCCCceEEEECCcccCCCCCCCcCEEEEee
Confidence 9999999999998 6999999999999999998863 345679999999988777778999999999
Q ss_pred ccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 621 VIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 621 VLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
....+| +.+...|||| .+++..-
T Consensus 147 aa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 999998 2466689998 6666544
No 78
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.05 E-value=1.7e-09 Score=110.31 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=86.6
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE-EEECCcc
Q 004178 526 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV-LFDGSIT 604 (770)
Q Consensus 526 ~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Ve-f~~GDae 604 (770)
.+.......||++|||+|....+.-.. |..+|+++|+++.|-+.|.+++.+ +..++++ |.+++.+
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E------------~k~~~~~~fvva~ge 136 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAE------------KKPLQVERFVVADGE 136 (252)
T ss_pred HhcccCccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhh------------ccCcceEEEEeechh
Confidence 344555567899999999998765433 458999999999999999987753 3456776 9999999
Q ss_pred ccC-CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 605 VFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 605 dlp-~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+++ .+++++|.|||..+|.-.. ++.+.+ +++.++|||| .+++-..
T Consensus 137 ~l~~l~d~s~DtVV~TlvLCSve-~~~k~L-~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLCSVE-DPVKQL-NEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCcccccCCeeeEEEEEEEeccC-CHHHHH-HHHHHhcCCCcEEEEEec
Confidence 998 5789999999999998887 555555 5799999998 5554433
No 79
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.04 E-value=6.1e-10 Score=101.37 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=82.6
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC--CC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--SR 609 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp--~~ 609 (770)
+.+|||+|||+|.++..+++.+ ..+++|+|+++..++.|+.++... ....+++++++|+.+.. ..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~ 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRN-----------GLDDRVEVIVGDARDLPEPLP 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHC-----------TTTTTEEEEESHHHHHHHTCT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHc-----------cCCceEEEEECchhhchhhcc
Confidence 4689999999999999998876 489999999999999999877531 12357999999998875 56
Q ss_pred CCCccEEEeccccccCC------hhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 610 LHGFDIGTCLEVIEHME------EDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~------~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++.||+|++.--..... .+....+.+.+.++|||| .+++.+||
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 78999999965443221 123457778899999998 77777764
No 80
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.04 E-value=7.2e-10 Score=113.93 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+..+..+++.+...++.+|||||||+|+++..|+...++..+|+++|+.+.+++.|++++... +..+|
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------------~~~nv 125 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------------GIDNV 125 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------------TTHSE
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------------ccCce
Confidence 344456777778888999999999999999999987656678999999999999999998642 34589
Q ss_pred EEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
.+.++|..........||.|++......++ ..+.+.|++| .+++...
T Consensus 126 ~~~~gdg~~g~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 126 EVVVGDGSEGWPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEES-GGGTTGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred eEEEcchhhccccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999999887666668899999999998777 2466789998 5555443
No 81
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.04 E-value=2.3e-09 Score=115.26 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=81.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-CCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p~~ 609 (770)
++.+|||+|||+|..+..|++......+|+|+|+|++||+.|++++.+. ....++.++++|+.+. +..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----------~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----------YPQLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----------CCCceEEEEEEcccchhhhh
Confidence 4679999999999999999887522378999999999999999877421 1123577889998763 222
Q ss_pred CC----CccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 610 LH----GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 610 d~----sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.. ...++++...++|+++++...++++++++|+|| .++|..
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 11 233444456899999888888999999999998 666544
No 82
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.03 E-value=3.1e-09 Score=106.81 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
..+.+.+...++.+|||+|||+|.++..+++.. +..+|+|+|+++++++.|+++++. .+..++++..
T Consensus 30 ~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~------------~~~~~v~~~~ 96 (196)
T PRK07402 30 LLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDR------------FGVKNVEVIE 96 (196)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH------------hCCCCeEEEE
Confidence 346677776778899999999999999888654 347999999999999999988753 1334799999
Q ss_pred CCccc-cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 601 GSITV-FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 601 GDaed-lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
+|+.+ ++.....+|.|+... . .....+++.+.++|+|| .+++.+++.
T Consensus 97 ~d~~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 97 GSAPECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CchHHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 99865 222223467764421 1 23446667899999999 777777763
No 83
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.03 E-value=3.7e-09 Score=117.48 Aligned_cols=117 Identities=18% Similarity=0.249 Sum_probs=86.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
++++.+......+|||+|||+|.++..+++.. |..+|+++|+|+.+++.|++++.... .....++++..+
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~---------~~~~~~v~~~~~ 288 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNM---------PEALDRCEFMIN 288 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------cccCceEEEEEc
Confidence 56667665556799999999999999999876 56899999999999999998875321 011247899998
Q ss_pred CccccCCCCCCccEEEecccccc---CChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEH---MEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEH---L~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
|+.... ...+||+|+|+--+|. +.++....+++.+.++|+|| .+++.
T Consensus 289 D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 289 NALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred cccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 875432 3358999999755543 34344567777899999998 44443
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.02 E-value=2.4e-09 Score=116.37 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
+.+.....+++.....++.+|||+|||+|.++..++..+ .+++|+|+++.|++.|++++... +..
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~------------g~~ 230 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHY------------GIE 230 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHh------------CCC
Confidence 333333455555566678899999999999998887765 79999999999999999887532 334
Q ss_pred cEEEEECCccccCCCCCCccEEEeccc------c-ccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 595 SAVLFDGSITVFDSRLHGFDIGTCLEV------I-EHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 595 ~Vef~~GDaedlp~~d~sFDlVVc~eV------L-EHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
++.+.++|+.+++..++.||+|++.-- . .+...+....+++++.++|||| .+++.+|+.
T Consensus 231 ~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 231 DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 588999999998887789999999521 1 1111133456777899999998 666666664
No 85
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.01 E-value=2.6e-09 Score=107.67 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=83.7
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCc
Q 004178 524 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 603 (770)
Q Consensus 524 l~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDa 603 (770)
+..+...++.+|||+|||+|.++..+++..++..+|+++|+++.+++.|++++... ....++++..+|+
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-----------g~~~~v~~~~~d~ 101 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-----------GVLNNIVLIKGEA 101 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-----------CCCCCeEEEEech
Confidence 45667778899999999999999988765434479999999999999999877531 1135789999998
Q ss_pred cccCC-CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 604 TVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 604 edlp~-~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.+... ....||+|++.... .....+++.+.++|||| .+++.++.
T Consensus 102 ~~~l~~~~~~~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 102 PEILFTINEKFDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred hhhHhhcCCCCCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 76432 23689999985422 22345666799999998 66665543
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.01 E-value=5.8e-09 Score=107.16 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
...++.+.+.+. ..+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++.. .+..++
T Consensus 74 ~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~------------~~~~~~ 139 (251)
T TIGR03534 74 EELVEAALERLK-KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAAR------------LGLDNV 139 (251)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH------------cCCCeE
Confidence 334444555443 245699999999999999999875 347999999999999999987642 233479
Q ss_pred EEEECCccccCCCCCCccEEEecc------ccccCChhH------------------HHHHHHHHHHcccCC-EEEEEec
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLE------VIEHMEEDE------------------ASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~e------VLEHL~~d~------------------~~~fleeI~rvLKPG-~LIISTP 651 (770)
++.++|+.+ +...+.||+|++.- .++++..+. ...+++.+.++|+|| .+++...
T Consensus 140 ~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 140 TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 999999876 33457899999842 222222111 235677899999998 6666543
No 87
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=3.5e-09 Score=115.42 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
...+++.+...++.+|||+|||+|.++..+++..+...+|+|+|+++++++.|++++.. .+..++.+.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~------------~g~~nV~~i 136 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR------------LGIENVIFV 136 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 33455566666788999999999999999998764335799999999999999987742 234579999
Q ss_pred ECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 600 DGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
++|+.+.......||+|++...+++++ ..+.+.|+|| .+++.
T Consensus 137 ~gD~~~~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 137 CGDGYYGVPEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred eCChhhcccccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEE
Confidence 999877665557899999987776654 2366789998 65554
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.98 E-value=5.6e-09 Score=114.66 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=84.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+++.+......+|||+|||+|.++..+++.. +..+|+++|+++.|++.|++++.. .+ ...++..+
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~------------n~-l~~~~~~~ 252 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAA------------NG-LEGEVFAS 252 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-CCCEEEEc
Confidence 44555554445689999999999999999876 456899999999999999987753 12 23567777
Q ss_pred CccccCCCCCCccEEEeccccccCC---hhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~---~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
|+... ..+.||+|+|+-.+|+.. .+....+++++.+.|||| .+++..
T Consensus 253 D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 253 NVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 76542 247899999998887632 234567778899999998 554444
No 89
>PRK04266 fibrillarin; Provisional
Probab=98.97 E-value=5.7e-09 Score=108.44 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=79.2
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc
Q 004178 526 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 605 (770)
Q Consensus 526 ~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed 605 (770)
.+...++.+|||+|||+|.++..|++..+ ..+|+|+|+++.|++.+.++.. ...++.++.+|+..
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~--------------~~~nv~~i~~D~~~ 131 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAE--------------ERKNIIPILADARK 131 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhh--------------hcCCcEEEECCCCC
Confidence 35666788999999999999999998763 4689999999999998776542 12478999999875
Q ss_pred cC---CCCCCccEEEeccccccCC-hhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 606 FD---SRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 606 lp---~~d~sFDlVVc~eVLEHL~-~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.. .....||+|++. +. ++....+++++.++|||| .++|+.+-
T Consensus 132 ~~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 132 PERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred cchhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 21 113569999853 32 223345567899999999 77776554
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.97 E-value=4.2e-09 Score=117.13 Aligned_cols=122 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+.+.+....+..+||||||+|.++..+|+.. |...++|+|+++.+++.|.+++.. .+..++.++++|
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~------------~gL~NV~~i~~D 180 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIEL------------LNLKNLLIINYD 180 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHH------------cCCCcEEEEECC
Confidence 4445555567799999999999999999887 668999999999999999887642 345689999999
Q ss_pred cccc--CCCCCCccEEEeccccccCChh----HHHHHHHHHHHcccCC-EEEEEecCCchhH
Q 004178 603 ITVF--DSRLHGFDIGTCLEVIEHMEED----EASQFGNIVLSSFRPR-ILIVSTPNYEYNA 657 (770)
Q Consensus 603 aedl--p~~d~sFDlVVc~eVLEHL~~d----~~~~fleeI~rvLKPG-~LIISTPN~efN~ 657 (770)
+..+ .++++++|.|++.....|.... ....++++++++|+|| .+.+.|-+.++-.
T Consensus 181 A~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~ 242 (390)
T PRK14121 181 ARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFE 242 (390)
T ss_pred HHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHH
Confidence 8764 3457899999876544332211 1146778899999998 8888888866543
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=98.95 E-value=1.2e-08 Score=104.77 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=81.8
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|++++.. .+ .++++..+|+.+.
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~------------~~-~~~~~~~~d~~~~- 96 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALL------------AG-VDVDVRRGDWARA- 96 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH------------hC-CeeEEEECchhhh-
Confidence 44557899999999999999998865 25999999999999999887642 12 2588889998764
Q ss_pred CCCCCccEEEeccccccCC-------------------hhHHHHHHHHHHHcccCC-EEEEEecCC-chhHHHh
Q 004178 608 SRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTPNY-EYNAILQ 660 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~-------------------~d~~~~fleeI~rvLKPG-~LIISTPN~-efN~lf~ 660 (770)
.....||+|++.--..+-. ......+++.+.++|||| .+++..+.. .....+.
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~ 170 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLT 170 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHH
Confidence 3457899999973221111 011345667789999998 665544443 3444443
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=98.93 E-value=2.1e-08 Score=98.31 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++++++.+++++.... ....++.+.++|
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~----------~~~~~~~~~~~d 81 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNN----------IRNNGVEVIRSD 81 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcC----------CCCcceEEEecc
Confidence 3444444667899999999999999999885 899999999999999988764210 011128888998
Q ss_pred ccccCCCCCCccEEEeccccccCC-------------------hhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHME-------------------EDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~-------------------~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+.+.. ....||+|++...+.+-. .+....+.+++.++|||| .+++..+
T Consensus 82 ~~~~~-~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 82 LFEPF-RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred ccccc-cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 76633 334899999865432211 122345677899999998 6655544
No 93
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.93 E-value=1.4e-08 Score=86.43 Aligned_cols=101 Identities=22% Similarity=0.373 Sum_probs=79.4
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-CCCC
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-RLHG 612 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-~d~s 612 (770)
+|+|+|||.|.++..+++. ...+++++|+++.+++.+++... .....++.++.+|+.+... ...+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAA------------ALLADNVEVLKGDAEELPPEADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHh------------cccccceEEEEcChhhhccccCCc
Confidence 4899999999999999883 34899999999999999875321 1234578999999888764 4578
Q ss_pred ccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 613 FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 613 FDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
||+|++..+++++. +....+.+.+.+.++|| .+++.
T Consensus 67 ~d~i~~~~~~~~~~-~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLV-EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehh-hHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999999999853 45566777899999998 55543
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.91 E-value=2.1e-08 Score=107.33 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++... ....+++++++|+.+.. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~-----------~~~~~i~~~~~D~~~~~-~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIQSDLFAAL-P 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEECchhhcc-C
Confidence 346799999999999999999875 4479999999999999999987421 11246999999985432 3
Q ss_pred CCCccEEEec------cccccCCh-----------------hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 610 LHGFDIGTCL------EVIEHMEE-----------------DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 610 d~sFDlVVc~------eVLEHL~~-----------------d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
...||+|+++ ..+.++.. +....+.+.+.++|+|| .+++.+.+
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4579999985 11222211 12245677789999998 77776665
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.91 E-value=1.3e-08 Score=108.97 Aligned_cols=102 Identities=21% Similarity=0.162 Sum_probs=76.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++... .....+.+..++... ...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n-----------~~~~~~~~~~~~~~~--~~~ 223 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELN-----------QVSDRLQVKLIYLEQ--PIE 223 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeccccc--ccC
Confidence 568999999999999998888752 68999999999999999877421 112346666666332 234
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++||+|++..+.++ ...+..++.++|||| .++++...
T Consensus 224 ~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 68999999765433 345667799999998 77776554
No 96
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.90 E-value=4.9e-08 Score=110.18 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+...++.+|||+|||+|..+..+++..+...+|+++|+++.+++.+++++.. .+..++++..+
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r------------~g~~~v~~~~~ 310 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR------------LGLKSIKILAA 310 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 444556667789999999999999999987653447999999999999999998753 34557999999
Q ss_pred CccccC----CCCCCccEEEec------cccccCChh-------H-------HHHHHHHHHHcccCC-EEEEEecC
Q 004178 602 SITVFD----SRLHGFDIGTCL------EVIEHMEED-------E-------ASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 602 Daedlp----~~d~sFDlVVc~------eVLEHL~~d-------~-------~~~fleeI~rvLKPG-~LIISTPN 652 (770)
|+..++ ...+.||.|++. +++.+-++- . ...+++++.++|||| .++.+|..
T Consensus 311 D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 311 DSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 998765 334689999962 566555421 1 346677899999998 67766654
No 97
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.90 E-value=1.7e-08 Score=105.10 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++.+||+.|||.|..+.+|++.+ .+|+|+|+|+.+++.+.+...-................+++++++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 356899999999999999999998 89999999999999986632100000000000011234799999999988642
Q ss_pred ---CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 610 ---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 610 ---d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
.+.||+|+-..++.+++++.+..+.+.+.++|+|| .+++
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 36899999999999999999999999999999998 4433
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.90 E-value=2.4e-08 Score=106.44 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=80.4
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 612 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~s 612 (770)
.+|||+|||+|.++..++... +..+|+|+|+|+++++.|++++... ....+++++++|+.+. .....
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~-----------~~~~~v~~~~~d~~~~-~~~~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKN-----------QLEHRVEFIQSNLFEP-LAGQK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEECchhcc-CcCCC
Confidence 699999999999999999876 4579999999999999999987421 1123599999998653 23347
Q ss_pred ccEEEec-------------cccccCCh----------hHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 613 FDIGTCL-------------EVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 613 FDlVVc~-------------eVLEHL~~----------d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
||+|+++ .++.|-+. +....+.+.+.++|+|| .+++.+.+.
T Consensus 183 fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 183 IDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred ccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 9999995 23444331 13456777889999998 776666553
No 99
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.90 E-value=1.5e-08 Score=103.84 Aligned_cols=107 Identities=10% Similarity=0.067 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC--
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp-- 607 (770)
.++.+|||+|||+|.++..+++..++..+|+|||+++ | . ..++++++++|+.+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~-----------------~~~~v~~i~~D~~~~~~~ 106 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D-----------------PIVGVDFLQGDFRDELVL 106 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c-----------------CCCCcEEEecCCCChHHH
Confidence 4578999999999999999988865557999999988 1 1 1246899999998853
Q ss_pred ------CCCCCccEEEeccccccCChh---H------HHHHHHHHHHcccCC-EEEEEecC-CchhHHH
Q 004178 608 ------SRLHGFDIGTCLEVIEHMEED---E------ASQFGNIVLSSFRPR-ILIVSTPN-YEYNAIL 659 (770)
Q Consensus 608 ------~~d~sFDlVVc~eVLEHL~~d---~------~~~fleeI~rvLKPG-~LIISTPN-~efN~lf 659 (770)
....+||+|+|..+.++.... . ...+++++.++|||| .+++.+.. .++..++
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence 456789999998776665421 1 134667899999998 66665544 3334443
No 100
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.88 E-value=9.4e-09 Score=105.82 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcC--CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 515 LSKQRVEYALQHIKES--CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~--~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
+...+.+..++.+... .+.-|||||||+|.-+..|...+ ..++|+|||+.||+.|.++. .
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e---~------------ 93 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERE---L------------ 93 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhh---h------------
Confidence 3333444444444433 47789999999999999888877 89999999999999998632 0
Q ss_pred CccEEEEECCc-cccCCCCCCccEEEeccccccCC---------hhHHHHHHHHHHHcccCC-EEEE
Q 004178 593 VKSAVLFDGSI-TVFDSRLHGFDIGTCLEVIEHME---------EDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 593 ~~~Vef~~GDa-edlp~~d~sFDlVVc~eVLEHL~---------~d~~~~fleeI~rvLKPG-~LII 648 (770)
.-.+..+|+ +-+|++.+.||.|+++.++.++- ...+..|...++.+|++| ..++
T Consensus 94 --egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 94 --EGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred --hcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 134566675 44889999999999988876652 334556777799999998 4444
No 101
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.87 E-value=1.6e-08 Score=105.85 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEECCccccCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVFDS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~-~~Vef~~GDaedlp~ 608 (770)
.++.+|||+|||+|.++..+++.+. .+|+|+|+++.+++.|++++.. .+. ..+.+..++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~------------~~~~~~~~~~~~~------ 177 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAEL------------NGVELNVYLPQGD------ 177 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH------------cCCCceEEEccCC------
Confidence 3578999999999999998888762 4699999999999999987742 111 234443332
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
..||+|++.... +....+.+++.++|||| .++++.
T Consensus 178 --~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 178 --LKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred --CCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 279999986443 33446667899999998 766654
No 102
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=3.2e-08 Score=103.52 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=81.4
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+...++.+|||+|||+|.++..++... +..+|+|+|+++.+++.|++++. . ....++.+..+
T Consensus 99 ~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~-~-----------~~~~~i~~~~~ 165 (275)
T PRK09328 99 WALEALLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK-H-----------GLGARVEFLQG 165 (275)
T ss_pred HHHHhccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH-h-----------CCCCcEEEEEc
Confidence 33344445567899999999999999999876 45899999999999999998764 1 12347999999
Q ss_pred CccccCCCCCCccEEEecc------ccccCCh------------------hHHHHHHHHHHHcccCC-EEEEE
Q 004178 602 SITVFDSRLHGFDIGTCLE------VIEHMEE------------------DEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~e------VLEHL~~------------------d~~~~fleeI~rvLKPG-~LIIS 649 (770)
|+.+.. ..+.||+|++.- .++.+.+ +....+.+++.++|+|| .+++.
T Consensus 166 d~~~~~-~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 166 DWFEPL-PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred cccCcC-CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 985532 246899999841 1111111 12245667788999998 66553
No 103
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.6e-08 Score=109.04 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=75.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc-EEEEECCccccCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS-AVLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~-Vef~~GDaedlp~~ 609 (770)
++.+|||+|||+|.+++..++.+. .+|+|+|+++.+++.|++++.. ++... +.....+....+ .
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~------------N~v~~~~~~~~~~~~~~~-~ 226 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARL------------NGVELLVQAKGFLLLEVP-E 226 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHH------------cCCchhhhcccccchhhc-c
Confidence 689999999999999999999984 7799999999999999998742 22221 222222322222 2
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.+.||+||++=.- +....+...+.+.+||| .++++-.-
T Consensus 227 ~~~~DvIVANILA-----~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 227 NGPFDVIVANILA-----EVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred cCcccEEEehhhH-----HHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 3689999997533 55667778899999998 77777644
No 104
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=3.2e-08 Score=103.13 Aligned_cols=195 Identities=21% Similarity=0.306 Sum_probs=119.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--------------------C
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--------------------P 589 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~--------------------p 589 (770)
..+..+|||||..|.++..+++..+ ...|.|+||++..|+.|++++.-..+.- -... +
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~-~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHE-TEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccccccc-ccccCCCcccccccccccccccccc
Confidence 4578999999999999999999874 3679999999999999999774332110 0000 0
Q ss_pred ----CCCCccEEEEECCcc-----ccCCCCCCccEEEeccccccCC----hhHHHHHHHHHHHcccCCEEEEEecCCchh
Q 004178 590 ----CTDVKSAVLFDGSIT-----VFDSRLHGFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPRILIVSTPNYEYN 656 (770)
Q Consensus 590 ----r~~~~~Vef~~GDae-----dlp~~d~sFDlVVc~eVLEHL~----~d~~~~fleeI~rvLKPG~LIISTPN~efN 656 (770)
..-+.++.|...+.. -+......||+|+|..+-.|+. ++-+..|...+.++|.||.++|..|-. |.
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp-Wk 213 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP-WK 213 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc-hH
Confidence 000112222222211 0123356799999977643332 355677777899999999666666653 33
Q ss_pred HHHhhhccccCCCCCchhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeC-CCCCCCCccceeeeeec
Q 004178 657 AILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG-SGDREPGFASQIAVFRS 735 (770)
Q Consensus 657 ~lf~~~~~~g~~e~pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~-~p~~e~Gf~TQiAVF~R 735 (770)
.+..+. +....+.....+.+..++.|..|+..... |++- ..+++. ......||..+|-+|++
T Consensus 214 sY~kaa--------------r~~e~~~~ny~~i~lkp~~f~~~l~q~~v--gle~-~e~~~~~~~~~skgf~R~i~~y~K 276 (288)
T KOG2899|consen 214 SYKKAA--------------RRSEKLAANYFKIFLKPEDFEDWLNQIVV--GLES-VEDLGLIVSAASKGFDRPILLYRK 276 (288)
T ss_pred HHHHHH--------------HHHHHhhcCccceecCHHHHHhhhhhhhh--heee-eccccccccccCccccceeeeeec
Confidence 333221 01122333344556899999999875422 3321 122331 11225799999999999
Q ss_pred CCCCCCccc
Q 004178 736 RTPPEEDDL 744 (770)
Q Consensus 736 ~~~~~~~~~ 744 (770)
+-......+
T Consensus 277 k~~~~~~~i 285 (288)
T KOG2899|consen 277 KLHPKTDAI 285 (288)
T ss_pred cCCCccCcC
Confidence 776665443
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.82 E-value=5.7e-08 Score=105.22 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 611 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~ 611 (770)
..+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++++... +...++++.++|+.+.. +..
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~l-~~~ 200 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERH-----------GLEDRVTLIESDLFAAL-PGR 200 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----------CCCCcEEEEECchhhhC-CCC
Confidence 3799999999999999999875 4579999999999999999987531 11246999999986532 235
Q ss_pred CccEEEec------ccc-------ccCCh----------hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 612 GFDIGTCL------EVI-------EHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 612 sFDlVVc~------eVL-------EHL~~----------d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.||+|++. ..+ +|-+. +....+.+.+.++|+|| .+++.+.+
T Consensus 201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 79999985 111 12211 12346677889999999 66665554
No 106
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.81 E-value=2.5e-08 Score=109.17 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=81.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc-----
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV----- 605 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed----- 605 (770)
++.+|||+|||-|.-+....... ...++|+||+...|+.|++|+.......... . ....-...|+.+|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~-~-~~~~f~a~f~~~D~f~~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSK-Q-YRFDFIAEFIAADCFSESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H-T-SEECCEEEEEESTTCCSHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccc-c-ccccchhheeccccccchhhh
Confidence 67899999999877665554443 4899999999999999999984432211000 0 0011356788888643
Q ss_pred -cCCCCCCccEEEeccccccCC--hhHHHHHHHHHHHcccCC-EEEEEecCCc
Q 004178 606 -FDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNYE 654 (770)
Q Consensus 606 -lp~~d~sFDlVVc~eVLEHL~--~d~~~~fleeI~rvLKPG-~LIISTPN~e 654 (770)
++.....||+|.|..+|||.- ++.+..+++++...|+|| ++|.+||+.+
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred hccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 222336899999999999975 355677889999999999 8888999965
No 107
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.81 E-value=5.6e-09 Score=108.71 Aligned_cols=108 Identities=12% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHHhhcCCCC-EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 520 VEYALQHIKESCAT-TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 520 ~e~Il~~L~~~~~~-rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
.+++........+. .++|+|||+|..++.++.+. .+|+|+|+|++||+.|++.-... ........
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~-----------y~~t~~~m 86 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVT-----------YCHTPSTM 86 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcc-----------cccCCccc
Confidence 34554544444444 89999999998899999887 89999999999999998732100 00011122
Q ss_pred EECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 599 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 599 ~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
-..++.++.-.+++.|+|+|..++|+++ +..|.+++.|+||+.
T Consensus 87 s~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 87 SSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKD 129 (261)
T ss_pred cccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCC
Confidence 2223333433478999999999999997 446777899999984
No 108
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.81 E-value=3.1e-08 Score=97.41 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+++.+...++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++. ...++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~--------------~~~~v~ii~ 65 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFA--------------AADNLTVIH 65 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhc--------------cCCCEEEEE
Confidence 345566666678899999999999999999885 799999999999999988762 134799999
Q ss_pred CCccccCCCCCCccEEEeccccccCC
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~ 626 (770)
+|+.+++..+..||.|++.--. |+.
T Consensus 66 ~D~~~~~~~~~~~d~vi~n~Py-~~~ 90 (169)
T smart00650 66 GDALKFDLPKLQPYKVVGNLPY-NIS 90 (169)
T ss_pred CchhcCCccccCCCEEEECCCc-ccH
Confidence 9999988776679999876443 444
No 109
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=3e-08 Score=112.14 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=86.2
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+...+...++.+|||+|||+|..+..+++..+...+|+|+|+++.+++.++++++. .+..++++.++|
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~------------~g~~~v~~~~~D 309 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA------------LGITIIETIEGD 309 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH------------hCCCeEEEEeCc
Confidence 33455666788999999999999888877543346999999999999999998753 244579999999
Q ss_pred ccccCCCCCCccEEEe----c--cccc-------cCChh-------HHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 603 ITVFDSRLHGFDIGTC----L--EVIE-------HMEED-------EASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 603 aedlp~~d~sFDlVVc----~--eVLE-------HL~~d-------~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
+..++ ....||+|++ + +++. ++.++ ....++..+.++|||| .++++|...
T Consensus 310 a~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 310 ARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred ccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 98765 3468999995 2 2221 12211 2235677899999998 777777654
No 110
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.79 E-value=8e-08 Score=100.18 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=103.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
-+++...+...++++|||+|||+|.-+..++...++..+|+++|+++++++.|++++... +...+++++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-----------gl~~~i~~~ 125 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-----------GVDHKINFI 125 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEE
Confidence 334444556667899999999999988888776545579999999999999999988531 223579999
Q ss_pred ECCccccCC------CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCch
Q 004178 600 DGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDE 673 (770)
Q Consensus 600 ~GDaedlp~------~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde 673 (770)
.||+.+.-. ..+.||+|++-. -. +....+.+.+.+.|+||.+++.. |.++...+. +++
T Consensus 126 ~gda~~~L~~l~~~~~~~~fD~VfiDa----~k-~~y~~~~~~~~~ll~~GG~ii~d-----n~l~~G~v~-----~~~- 189 (234)
T PLN02781 126 QSDALSALDQLLNNDPKPEFDFAFVDA----DK-PNYVHFHEQLLKLVKVGGIIAFD-----NTLWFGFVA-----QEE- 189 (234)
T ss_pred EccHHHHHHHHHhCCCCCCCCEEEECC----CH-HHHHHHHHHHHHhcCCCeEEEEE-----cCCcCCeec-----Ccc-
Confidence 999866311 136899996632 22 33345566789999999444432 122222110 000
Q ss_pred hhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeC
Q 004178 674 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 718 (770)
Q Consensus 674 ~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~ 718 (770)
....++. .-....++++.+.+...-.+...+..+|+
T Consensus 190 --------~~~~~~~-~~~~~~ir~~~~~i~~~~~~~~~~lp~gd 225 (234)
T PLN02781 190 --------DEVPEHM-RAYRKALLEFNKLLASDPRVEISQISIGD 225 (234)
T ss_pred --------cccchhh-hHHHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 0001111 11234566666666666688888888886
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.78 E-value=8.4e-08 Score=96.98 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=90.7
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
...+..+.+.++.+++|||||+|..+..++..+ +..+|+++|-++++++..+++..+. +.+|+++..
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~f------------g~~n~~vv~ 90 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARF------------GVDNLEVVE 90 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHh------------CCCcEEEEe
Confidence 345677888899999999999999999999554 7799999999999999999887542 468999999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
|++-+.-.....||.|+..+. ..++ .+++.+...|||| .+++..-
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~~i~-----~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG-GNIE-----EILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC-CCHH-----HHHHHHHHHcCcCCeEEEEee
Confidence 998775444348999999888 5655 5666788899999 7766443
No 112
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.78 E-value=2.2e-08 Score=103.65 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=85.9
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCC--CCCCccEEEEECCcc
Q 004178 527 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVP--CTDVKSAVLFDGSIT 604 (770)
Q Consensus 527 L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~p--r~~~~~Vef~~GDae 604 (770)
+....+.+||+.|||.|..+..|++.+ .+|+|+|+|+.+++.|.+........ ..... .....+|++++||+.
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~--~~~~~~~~~~~~~i~~~~gDfF 107 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTV--TSVGGFKRYQAGRITIYCGDFF 107 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEEC--TTCTTEEEETTSSEEEEES-TT
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCc--ccccceeeecCCceEEEEcccc
Confidence 445567799999999999999999998 89999999999999985432210000 00000 012347899999999
Q ss_pred ccCCCC-CCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 605 VFDSRL-HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 605 dlp~~d-~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
+++... +.||+|+=..++.-++++.+..+.+.+.++|+||
T Consensus 108 ~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 108 ELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp TGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred cCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 887654 5899999999999999999999999999999998
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.78 E-value=5.6e-08 Score=102.84 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=86.3
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcc
Q 004178 525 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 604 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDae 604 (770)
..+...++.+|||+|||+|..+..+++..+....|+++|+++.+++.++++++. .+..++++..+|+.
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~------------~g~~~v~~~~~D~~ 132 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR------------CGVLNVAVTNFDGR 132 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH------------cCCCcEEEecCCHH
Confidence 345566788999999999999998887653346899999999999999998853 24457999999988
Q ss_pred ccCCCCCCccEEEe------ccccccCCh--------------hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 605 VFDSRLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 605 dlp~~d~sFDlVVc------~eVLEHL~~--------------d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.++.....||+|++ .+++.+-++ .....+++.+.++|||| .++.+|..
T Consensus 133 ~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 133 VFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 76655567999986 233333221 12234677899999998 77777654
No 114
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=2.8e-07 Score=103.86 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++++.. .+. ++++.++
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~------------~g~-~~~~~~~ 300 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQR------------LGL-KATVIVG 300 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHH------------cCC-CeEEEEc
Confidence 444556667789999999999999999998762 26999999999999999988752 122 4789999
Q ss_pred CccccCC--CCCCccEEEe----cc--ccccCC-------hh-------HHHHHHHHHHHcccCC-EEEEEecC
Q 004178 602 SITVFDS--RLHGFDIGTC----LE--VIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 602 Daedlp~--~d~sFDlVVc----~e--VLEHL~-------~d-------~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
|+.+++. ...+||.|++ +. ++.+-+ ++ ....+++.+.++|||| .++++|..
T Consensus 301 D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 301 DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9987542 3467999994 32 332211 11 1235677899999999 77777753
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=8.1e-08 Score=108.51 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=88.5
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++++ .+..++++.++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r------------~g~~~v~~~~~ 295 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR------------LKLSSIEIKIA 295 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH------------cCCCeEEEEEC
Confidence 344455667788999999999999998887653457999999999999999998753 24456899999
Q ss_pred CccccC-CCCCCccEEEe------ccccccCC-------hh-------HHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 602 SITVFD-SRLHGFDIGTC------LEVIEHME-------ED-------EASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 602 Daedlp-~~d~sFDlVVc------~eVLEHL~-------~d-------~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
|+..++ ...+.||.|++ .+++.+-+ .+ ....++.++.+.|||| .++.+|...
T Consensus 296 Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 296 DAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred chhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 998765 33568999986 23343222 11 1245566799999998 777777653
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.73 E-value=1.6e-07 Score=98.86 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 514 PLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~-~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
+-....++.+...+.. ....+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++.. .
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~------------~- 133 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLAD------------A- 133 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------c-
Confidence 3444455555554442 234589999999999999988765 336899999999999999988742 1
Q ss_pred CccEEEEECCccccCC--CCCCccEEEecc------ccccCChh------------------HHHHHHHHHHHcccCC-E
Q 004178 593 VKSAVLFDGSITVFDS--RLHGFDIGTCLE------VIEHMEED------------------EASQFGNIVLSSFRPR-I 645 (770)
Q Consensus 593 ~~~Vef~~GDaedlp~--~d~sFDlVVc~e------VLEHL~~d------------------~~~~fleeI~rvLKPG-~ 645 (770)
+++++++|+.+... ..+.||+|++.= .+..++++ ....+.+.+.++|+|| .
T Consensus 134 --~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 134 --GGTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred --CCEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 24788899865322 125799999852 22222211 1246666788999998 7
Q ss_pred EEEEecCCchhHH
Q 004178 646 LIVSTPNYEYNAI 658 (770)
Q Consensus 646 LIISTPN~efN~l 658 (770)
+++.+.......+
T Consensus 212 l~l~~~~~~~~~v 224 (251)
T TIGR03704 212 LLVETSERQAPLA 224 (251)
T ss_pred EEEEECcchHHHH
Confidence 7666665444433
No 117
>PTZ00146 fibrillarin; Provisional
Probab=98.73 E-value=9.2e-08 Score=102.94 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=76.9
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 606 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl- 606 (770)
...++.+|||+|||+|.++..+++..++..+|+++|+++.|++...+... ...+|.++.+|+...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------------~r~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------------KRPNIVPIIEDARYPQ 194 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------------hcCCCEEEECCccChh
Confidence 45577899999999999999999987666799999999976644433221 114788999998642
Q ss_pred --CCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 607 --DSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 607 --p~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
......||+|++... .+++...+..++.++|||| .++|.
T Consensus 195 ~y~~~~~~vDvV~~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hhhcccCCCCEEEEeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 112357999988764 2356666766799999999 76664
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.72 E-value=1.1e-07 Score=101.72 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC-C
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp-~ 608 (770)
.++++|||||||+|..+..++++. +..+|++||+++++++.|++.+...... ....++++++.+|+...- .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-------~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-------AYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-------cccCCceEEEECchHHHHhh
Confidence 357899999999999999998874 3579999999999999999876432110 012468999999987643 2
Q ss_pred CCCCccEEEeccccccCChhH--HHHHHHHHHHcccCCEEEE
Q 004178 609 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~--~~~fleeI~rvLKPG~LII 648 (770)
..+.||+|++...-.+.+... ...|.+.+.+.|+||.+++
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 356899999854333222111 2456667999999994444
No 119
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.71 E-value=5e-09 Score=108.34 Aligned_cols=108 Identities=19% Similarity=0.289 Sum_probs=79.9
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
++..++.....++||+|||||-....|.... .+++|+|||+.|++.|.++= . --++.+++
T Consensus 117 mI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg---------------~--YD~L~~Ae 176 (287)
T COG4976 117 MIGKADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKG---------------L--YDTLYVAE 176 (287)
T ss_pred HHHhccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhcc---------------c--hHHHHHHH
Confidence 3344455557899999999999999998877 78999999999999997631 1 11344555
Q ss_pred ccccC--CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 603 ITVFD--SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 603 aedlp--~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+..+- .....||+|++..|+.++. .+..++--+.+.|+|| .+.+++-.
T Consensus 177 a~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 177 AVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecc
Confidence 54332 3457899999999999998 3444445689999999 77776654
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.71 E-value=1.9e-07 Score=99.82 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=64.8
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
....+|||+|||+|.++..+++.. +..+|+|+|+++.|++.|++++ ++++++++|+.+...
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----------------~~v~~v~~D~~e~~~- 123 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----------------PEAEWITSDVFEFES- 123 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------------cCCEEEECchhhhcc-
Confidence 345799999999999988887754 2369999999999999998743 368899999987653
Q ss_pred CCCccEEEeccccccCChh
Q 004178 610 LHGFDIGTCLEVIEHMEED 628 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d 628 (770)
...||+|+++--+.|++..
T Consensus 124 ~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCCcEEEEcCCccccCch
Confidence 4689999998888887643
No 121
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.70 E-value=1.7e-07 Score=105.61 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-cEEEEE
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-SAVLFD 600 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~-~Vef~~ 600 (770)
++...+...++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.++++++.. +.. .+++..
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~------------g~~~~v~~~~ 295 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRL------------GLTIKAETKD 295 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHc------------CCCeEEEEec
Confidence 555666777889999999999999999988653 479999999999999999988532 222 345577
Q ss_pred CCccccCC--CCCCccEEEe------ccccccCChh--------------HHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 601 GSITVFDS--RLHGFDIGTC------LEVIEHMEED--------------EASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 601 GDaedlp~--~d~sFDlVVc------~eVLEHL~~d--------------~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
+|....+. ....||.|++ .+++.+.++- ....+++++.++|||| .++.+|...
T Consensus 296 ~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 296 GDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 77765543 4578999985 3567665521 1345677899999998 777777764
No 122
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.70 E-value=5.9e-08 Score=104.59 Aligned_cols=141 Identities=19% Similarity=0.263 Sum_probs=99.0
Q ss_pred hhhcCCchHHHHHHH-HHHHHh-h--cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 004178 507 EQALFSPPLSKQRVE-YALQHI-K--ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 582 (770)
Q Consensus 507 e~~~F~PPL~~qR~e-~Il~~L-~--~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~ 582 (770)
+....+|.++...+. ||...| + ..+++.++|+|||-|.-++...+.+ +..++|+||++..++.|+++.....+.
T Consensus 89 e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r 166 (389)
T KOG1975|consen 89 EKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNR 166 (389)
T ss_pred hhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhh
Confidence 344455555554433 333322 1 2357889999999988776555544 589999999999999999988755433
Q ss_pred ccccCCCCCCCccEEEEECCccc------cCCCCCCccEEEeccccccCC--hhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 583 KLDAAVPCTDVKSAVLFDGSITV------FDSRLHGFDIGTCLEVIEHME--EDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 583 ~~~~l~pr~~~~~Vef~~GDaed------lp~~d~sFDlVVc~eVLEHL~--~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
. ....-.+.|+.+|-.. +++.+..||+|-|..++|+-- .+.+..++.++.+.|||| ++|-|+|+.
T Consensus 167 ~------~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 167 F------KKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred h------hcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 2 1223468999999532 333445599999999998753 356677888999999999 777788986
Q ss_pred ch
Q 004178 654 EY 655 (770)
Q Consensus 654 ef 655 (770)
+.
T Consensus 241 d~ 242 (389)
T KOG1975|consen 241 DV 242 (389)
T ss_pred HH
Confidence 53
No 123
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=9e-08 Score=108.22 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.+++++.. .+..++++.++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~------------~g~~~v~~~~~ 308 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR------------LGLTNIETKAL 308 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeC
Confidence 444556666788999999999999999988653457999999999999999998753 23456999999
Q ss_pred CccccCCC-CCCccEEEec------cccccCCh-------h-------HHHHHHHHHHHcccCC-EEEEEecC
Q 004178 602 SITVFDSR-LHGFDIGTCL------EVIEHMEE-------D-------EASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 602 Daedlp~~-d~sFDlVVc~------eVLEHL~~-------d-------~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
|+.++... .+.||+|++. +++.|-++ . ....+++.+.++|||| .++.+|..
T Consensus 309 D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 309 DARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99876421 2689999973 23333221 1 1234677899999998 77666654
No 124
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.69 E-value=9.7e-08 Score=100.59 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=92.1
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+..........+|||+|||+|.....++++. +..+++|||+.+++.+.|+++++- .....+++++++|
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~l-----------n~l~~ri~v~~~D 103 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVAL-----------NPLEERIQVIEAD 103 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHh-----------CcchhceeEehhh
Confidence 3345555668999999999999999999986 348999999999999999998752 2244689999999
Q ss_pred ccccCCC--CCCccEEEeccc----------------cccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHH
Q 004178 603 ITVFDSR--LHGFDIGTCLEV----------------IEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 659 (770)
Q Consensus 603 aedlp~~--d~sFDlVVc~eV----------------LEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf 659 (770)
+.++... ..+||+|+|+=- -+|...-..+.+.+...++|||| .+.+.-|-.....++
T Consensus 104 i~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~ 179 (248)
T COG4123 104 IKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEII 179 (248)
T ss_pred HHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHH
Confidence 9886543 346999999511 12333334567788899999998 666655554444443
No 125
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.69 E-value=1.2e-07 Score=102.71 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
...++.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++.. .+..++
T Consensus 159 ~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~------------~~l~~v 223 (315)
T PRK03522 159 AQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAE------------LGLTNV 223 (315)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------cCCCce
Confidence 3344455555554457899999999999999999876 7999999999999999987742 234579
Q ss_pred EEEECCccccCC-CCCCccEEEec
Q 004178 597 VLFDGSITVFDS-RLHGFDIGTCL 619 (770)
Q Consensus 597 ef~~GDaedlp~-~d~sFDlVVc~ 619 (770)
+|.++|+.++.. ..+.||+|++.
T Consensus 224 ~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 224 QFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred EEEEcCHHHHHHhcCCCCeEEEEC
Confidence 999999987543 23579999876
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.69 E-value=7.4e-08 Score=103.99 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=70.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++++|||+|||+|.++...++.+. .+|+|+|+++.+++.|++++.. ++ ...++.+. ...+..
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~--N~---------~~~~~~v~--~~~~~~-- 222 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAEL--NG---------VEDRIEVS--LSEDLV-- 222 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHH--TT----------TTCEEES--CTSCTC--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHH--cC---------CCeeEEEE--Eecccc--
Confidence 3578999999999999999999873 6899999999999999998742 11 12234332 222222
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
...||+|+++-.. +.+..+...+.++|+|| .++++-.
T Consensus 223 ~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 223 EGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred cccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 3789999987554 44456667789999998 7776543
No 127
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.1e-07 Score=100.16 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=84.8
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.+++.+......+|||+|||.|.++..|++.. |..+++-+|++..+++.|++++.. ++..+..++.
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~------------N~~~~~~v~~ 214 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAA------------NGVENTEVWA 214 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHH------------cCCCccEEEE
Confidence 456777777666799999999999999999988 578999999999999999998853 3344446777
Q ss_pred CCccccCCCCCCccEEEeccccccCC---hhHHHHHHHHHHHcccCC
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHME---EDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~---~d~~~~fleeI~rvLKPG 644 (770)
.|+.+-... .||+|+|+=-||-=. ..-...++....+.|++|
T Consensus 215 s~~~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 215 SNLYEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred ecccccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 777654433 999999986664322 123347777899999998
No 128
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.68 E-value=1.6e-07 Score=106.31 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
..+..++.+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+|++|++.|++++.. .+..
T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~------------~~~~ 345 (443)
T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARR------------NGLD 345 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHH------------cCCC
Confidence 345566677777766677899999999999999999886 7999999999999999987742 2345
Q ss_pred cEEEEECCccccC----CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 595 SAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 595 ~Vef~~GDaedlp----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+++++++|+.+.. ..+..||+|++.---.-+ ..+.+.+.+ ++|+ .++++.
T Consensus 346 ~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 346 NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe
Confidence 7999999986532 234679999763211111 122333444 5777 666664
No 129
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.66 E-value=1.4e-07 Score=94.34 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=70.0
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+|||+|||+|.++..+++...+..+|+|+|+++.+ . . +++++.++|+.+.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~-~-----------------~~i~~~~~d~~~~~ 85 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P-I-----------------ENVDFIRGDFTDEE 85 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c-C-----------------CCceEEEeeCCChh
Confidence 34568899999999999999888765344689999999854 1 1 25778888886643
Q ss_pred --------CCCCCccEEEeccc--------cccCCh-hHHHHHHHHHHHcccCC-EEEEEe
Q 004178 608 --------SRLHGFDIGTCLEV--------IEHMEE-DEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 608 --------~~d~sFDlVVc~eV--------LEHL~~-d~~~~fleeI~rvLKPG-~LIIST 650 (770)
...++||+|++... ++|+.. +....+++++.++|+|| .+++..
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 23567999998643 222211 12345667899999998 666643
No 130
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.65 E-value=3.7e-07 Score=102.63 Aligned_cols=90 Identities=22% Similarity=0.161 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
|-.+...+.+.+.+. ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++.. .+
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~------------~g- 299 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAAD------------LG- 299 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHH------------cC-
Confidence 344444555554443 35699999999999999888754 347999999999999999998742 12
Q ss_pred ccEEEEECCccccCC-CCCCccEEEec
Q 004178 594 KSAVLFDGSITVFDS-RLHGFDIGTCL 619 (770)
Q Consensus 594 ~~Vef~~GDaedlp~-~d~sFDlVVc~ 619 (770)
.++++.++|+.+... ..+.||+|+|+
T Consensus 300 ~rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 300 ARVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred CcEEEEEcchhccccccCCCccEEEEC
Confidence 379999999865432 23579999994
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.63 E-value=4.9e-07 Score=101.33 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=97.8
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEECCccccCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFDS 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~--~~Vef~~GDaedlp~ 608 (770)
++++|||+|||+|.++...+..+ ..+|+++|+|+.+++.|++++.. ++. .+++++++|+.+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~------------Ngl~~~~v~~i~~D~~~~l~ 285 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVEL------------NKLDLSKAEFVRDDVFKLLR 285 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHH------------cCCCCCcEEEEEccHHHHHH
Confidence 47899999999999988766543 36999999999999999998752 222 378999999876421
Q ss_pred ----CCCCccEEEecccc---c--cCCh--hHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCchhhh
Q 004178 609 ----RLHGFDIGTCLEVI---E--HMEE--DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQ 676 (770)
Q Consensus 609 ----~d~sFDlVVc~eVL---E--HL~~--d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde~~~ 676 (770)
....||+|++.=-- . .+.. .....+...+.++|+|| .++..+.+.
T Consensus 286 ~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~----------------------- 342 (396)
T PRK15128 286 TYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG----------------------- 342 (396)
T ss_pred HHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC-----------------------
Confidence 24579999975211 0 0000 11234444678999999 454444331
Q ss_pred hccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeCCCCCC
Q 004178 677 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDRE 723 (770)
Q Consensus 677 ~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~~p~~e 723 (770)
..+.++|.+...+.+.+.|-.+.+.+....|..+
T Consensus 343 -------------~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~Dh 376 (396)
T PRK15128 343 -------------LMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADH 376 (396)
T ss_pred -------------cCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCCC
Confidence 1356788888878888888888887766554433
No 132
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.63 E-value=3.2e-07 Score=94.81 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=99.0
Q ss_pred CCCEEEEEcCccchHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LA-k~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
...++||.|+|-|+.+..|+ +.+ .+|.-||+.+.+++.|++.+.. ....-.++++..++++.++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~------------~~~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGK------------DNPRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCC------------GGCCEEEEEES-GGG----
T ss_pred CcceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcc------------cCCCcceEEecCHhhccCC
Confidence 46799999999999998664 444 8999999999999999986531 1123468999999998887
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCchhhhhccccccCCCccc
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDHKF 689 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh~DHkf 689 (770)
...||+|++.+++.|+.++++..|++.+...|+|+.+||.--|-.-. ....+...|...
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~---------------------~~~~~D~~DsSv 178 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS---------------------GFDEFDEEDSSV 178 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS---------------------SEEEEETTTTEE
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC---------------------CCcccCCccCee
Confidence 78999999999999999999999999999999999555544442100 011234445554
Q ss_pred ccCHHHHHHHHHHHHHHCCcEEEEEeee
Q 004178 690 EWTRDQFNCWATELAARHNYSVEFSGVG 717 (770)
Q Consensus 690 ewTreEF~~Wa~~La~r~GY~VEF~GvG 717 (770)
--+.+.|+ ++.+++|+.+.....-
T Consensus 179 TRs~~~~~----~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 179 TRSDEHFR----ELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp EEEHHHHH----HHHHHCT-EEEEEEE-
T ss_pred ecCHHHHH----HHHHHcCCEEEEeccc
Confidence 45666677 6778999999665443
No 133
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.60 E-value=1.6e-07 Score=92.12 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=63.2
Q ss_pred EEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHH
Q 004178 560 VGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLS 639 (770)
Q Consensus 560 vGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~r 639 (770)
+|+|+|++||+.|+++..... .....++++.++|++++++.+++||+|++..+++|++ +.. .+++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~---------~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~-~~l~ei~r 69 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA---------RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRL-RAMKEMYR 69 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc---------ccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHH-HHHHHHHH
Confidence 599999999999987653110 1123479999999999999889999999999999997 444 44567999
Q ss_pred cccCC-EEEEEec
Q 004178 640 SFRPR-ILIVSTP 651 (770)
Q Consensus 640 vLKPG-~LIISTP 651 (770)
+|||| .+++...
T Consensus 70 vLkpGG~l~i~d~ 82 (160)
T PLN02232 70 VLKPGSRVSILDF 82 (160)
T ss_pred HcCcCeEEEEEEC
Confidence 99999 6655433
No 134
>PRK04457 spermidine synthase; Provisional
Probab=98.59 E-value=3.4e-07 Score=97.09 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-CC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p~ 608 (770)
..+.+|||||||.|.++..+++.. +..+|+++|+++++++.|++.+.. ....++++++.+|+.+. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~-----------~~~~~rv~v~~~Da~~~l~~ 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFEL-----------PENGERFEVIEADGAEYIAV 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCC-----------CCCCCceEEEECCHHHHHHh
Confidence 357899999999999999998876 568999999999999999987631 11235899999998653 22
Q ss_pred CCCCccEEEecccc-ccCChh-HHHHHHHHHHHcccCC-EEEEEe
Q 004178 609 RLHGFDIGTCLEVI-EHMEED-EASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 609 ~d~sFDlVVc~eVL-EHL~~d-~~~~fleeI~rvLKPG-~LIIST 650 (770)
....||+|++...- ..++.. ....|.+.+.+.|+|| ++++..
T Consensus 133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 24689999874211 111110 1246667899999998 666643
No 135
>PHA03412 putative methyltransferase; Provisional
Probab=98.57 E-value=5.7e-07 Score=94.36 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred hcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCC--CCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 004178 509 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT--ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 586 (770)
Q Consensus 509 ~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~gg--p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~ 586 (770)
-.|+.|..-.|...+ . ...+.+|||+|||+|.++..+++... +..+|+|+|+++.+++.|++++
T Consensus 31 GqFfTP~~iAr~~~i-~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------- 96 (241)
T PHA03412 31 GAFFTPIGLARDFTI-D---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------- 96 (241)
T ss_pred CccCCCHHHHHHHHH-h---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------
Confidence 345556555554322 2 22367999999999999998876421 2368999999999999998743
Q ss_pred CCCCCCCccEEEEECCccccCCCCCCccEEEeccccc----------cCChhHHHHHHHHHHHcccCCEEEE
Q 004178 587 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIE----------HMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 587 l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLE----------HL~~d~~~~fleeI~rvLKPG~LII 648 (770)
.++.+..+|+...+. +..||+|+++==.. |-.......+++.+.++++||.+|+
T Consensus 97 -------~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 97 -------PEATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred -------cCCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 257899999876654 46899999952111 1111234556677888999996654
No 136
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.57 E-value=7.3e-07 Score=91.65 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
+.+.--+++...+...++++||||||+.|+-+..+++..++..+|+.+|++++..+.|++.+... +...
T Consensus 29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a-----------g~~~ 97 (205)
T PF01596_consen 29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA-----------GLDD 97 (205)
T ss_dssp HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT-----------TGGG
T ss_pred cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc-----------CCCC
Confidence 44444455555556667899999999999999999987656689999999999999999987531 2235
Q ss_pred cEEEEECCccccCC------CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCC
Q 004178 595 SAVLFDGSITVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQE 668 (770)
Q Consensus 595 ~Vef~~GDaedlp~------~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~ 668 (770)
+|+++.||+.+.-. ..+.||+|+.-. -..... .+.+.+.++|+||.+++.. |.++...+
T Consensus 98 ~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa----~K~~y~-~y~~~~~~ll~~ggvii~D-----N~l~~G~V----- 162 (205)
T PF01596_consen 98 RIEVIEGDALEVLPELANDGEEGQFDFVFIDA----DKRNYL-EYFEKALPLLRPGGVIIAD-----NVLWRGSV----- 162 (205)
T ss_dssp GEEEEES-HHHHHHHHHHTTTTTSEEEEEEES----TGGGHH-HHHHHHHHHEEEEEEEEEE-----TTTGGGGG-----
T ss_pred cEEEEEeccHhhHHHHHhccCCCceeEEEEcc----cccchh-hHHHHHhhhccCCeEEEEc-----ccccccee-----
Confidence 89999999865311 135899995543 332333 4445688999999655543 23333221
Q ss_pred CCCchhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeC
Q 004178 669 DDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 718 (770)
Q Consensus 669 e~pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~ 718 (770)
..+++... ....++++...+...-.+...+..+|+
T Consensus 163 --------------~~~~~~~~-~~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 163 --------------ADPDDEDP-KTVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp --------------GSTTGGSH-HHHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred --------------cCccchhh-hHHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 01111111 111255555566666688888888886
No 137
>PLN02366 spermidine synthase
Probab=98.53 E-value=8.8e-07 Score=96.25 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=79.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
.++++||+||||.|..++.++++. +..+|+.+|+++.+++.|++.+..... .-..++++++.+|+...-.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--------~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--------GFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--------ccCCCceEEEEChHHHHHhh
Confidence 457899999999999999999885 457999999999999999987642110 1134689999999754321
Q ss_pred -CCCCccEEEeccccccCChhH--HHHHHHHHHHcccCCEEEE
Q 004178 609 -RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 609 -~d~sFDlVVc~eVLEHL~~d~--~~~fleeI~rvLKPG~LII 648 (770)
..+.||+|++-..-.+.+... ...|.+.+.+.|+||.+++
T Consensus 161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEE
Confidence 246799999854433322111 2456678999999995443
No 138
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.53 E-value=9.7e-07 Score=101.80 Aligned_cols=108 Identities=17% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
++.+|||+|||+|.++..++... +..+|+|+|+|+.+++.|++++... ....++++.++|+.+.. ..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~-----------~l~~~v~~~~~D~~~~~-~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKY-----------EVTDRIQIIHSNWFENI-EK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc-----------CCccceeeeecchhhhC-cC
Confidence 35689999999999999888764 3479999999999999999887421 11246899999975422 24
Q ss_pred CCccEEEec--------------cccccCC-------h---hHHHHHHHHHHHcccCC-EEEEEec
Q 004178 611 HGFDIGTCL--------------EVIEHME-------E---DEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 611 ~sFDlVVc~--------------eVLEHL~-------~---d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
..||+|+|+ +++.|-+ . +....+++.+.++|+|| .+++..-
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 589999993 1222221 0 12234666788999998 6665543
No 139
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.52 E-value=3.5e-07 Score=96.59 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=91.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 004178 512 SPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 591 (770)
Q Consensus 512 ~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~ 591 (770)
...+|+....+|+..++..++.+|||.|.|+|.++..|++..++.++|+.+|+.++.++.|+++++.. +
T Consensus 21 tQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-----------g 89 (247)
T PF08704_consen 21 TQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-----------G 89 (247)
T ss_dssp S----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-----------T
T ss_pred cceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-----------C
Confidence 34699999999999999999999999999999999999987778899999999999999999998642 2
Q ss_pred CCccEEEEECCccccCCC---CCCccEEEeccccccCChhHHHHHHHHHHHcc-cCC-EEEEEecCCc
Q 004178 592 DVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPR-ILIVSTPNYE 654 (770)
Q Consensus 592 ~~~~Vef~~GDaedlp~~---d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvL-KPG-~LIISTPN~e 654 (770)
...+|++.++|+.+-.+. ...+|+|+. -|+ +++..+. .+.+.| ||| .+.+..|+-+
T Consensus 90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp-~Pw~~i~-~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLP-DPWEAIP-HAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESS-SGGGGHH-HHHHHE-EEEEEEEEEESSHH
T ss_pred CCCCceeEecceecccccccccCcccEEEE-----eCC-CHHHHHH-HHHHHHhcCCceEEEECCCHH
Confidence 345899999999653331 367999843 344 4555554 588899 898 8888888843
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.51 E-value=1.2e-06 Score=93.01 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=77.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-CC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p~ 608 (770)
.++++||+||||+|.++..+++.. +..+|+++|+++++++.|++.+..... .-..+++++..+|..+. ..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--------~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--------SYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--------cccCCceEEEECchHHHHHh
Confidence 356799999999999999888775 457899999999999999987642210 11235788888887542 22
Q ss_pred CCCCccEEEeccccccCChhH--HHHHHHHHHHcccCC-EEEEE
Q 004178 609 RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~--~~~fleeI~rvLKPG-~LIIS 649 (770)
..+.||+|++...-..-+... ...+.+.+.+.|+|| .+++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 246899999854422211111 245666799999999 55443
No 141
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.51 E-value=7.1e-07 Score=92.34 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=82.4
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
+.......+..+|||||+|.|.++..+++.. |..+++.+|. |..++.+++ ..+|++..||
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------------------~~rv~~~~gd 151 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------------------ADRVEFVPGD 151 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------------------TTTEEEEES-
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------------------cccccccccc
Confidence 3444455567899999999999999999887 6789999997 888888866 1489999999
Q ss_pred ccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC---EEEEE
Q 004178 603 ITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR---ILIVS 649 (770)
Q Consensus 603 aedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG---~LIIS 649 (770)
+. -+.+ . +|+++...++|++++++...+++++++.|+|| .++|.
T Consensus 152 ~f-~~~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 152 FF-DPLP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp TT-TCCS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred HH-hhhc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 97 3333 3 99999999999999999999999999999975 55553
No 142
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.48 E-value=2.2e-06 Score=88.03 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=106.7
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEECCccccCC----
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFDS---- 608 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V-ef~~GDaedlp~---- 608 (770)
+|||||||+|..+.++++.. |..+..-.|+++..+...+..+... +.+|+ .-+.-|+...+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~------------~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEA------------GLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhc------------CCcccCCCeEeecCCCCCcccc
Confidence 69999999999999999988 5678888999998865554443221 11121 112234443322
Q ss_pred ----CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC-------chhHHHhhhccccCCCCCchhhh
Q 004178 609 ----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY-------EYNAILQKSSSTIQEDDPDEKTQ 676 (770)
Q Consensus 609 ----~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~-------efN~lf~~~~~~g~~e~pde~~~ 676 (770)
....||+|+|..++|-++-.....+++.+.++|+|| .+++.-|-. +-|..|..
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~--------------- 159 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDA--------------- 159 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHH---------------
Confidence 235899999999999999888888888999999998 888888753 22333332
Q ss_pred hccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeCCCCCCCCccceeeeeec
Q 004178 677 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRS 735 (770)
Q Consensus 677 ~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~~p~~e~Gf~TQiAVF~R 735 (770)
+..-|++ +|--.++. |+..++.++|+.. ..+-+.|. + -++-||+|
T Consensus 160 --sLr~rdp----~~GiRD~e-~v~~lA~~~GL~l--~~~~~MPA-N----N~~Lvfrk 204 (204)
T PF06080_consen 160 --SLRSRDP----EWGIRDIE-DVEALAAAHGLEL--EEDIDMPA-N----NLLLVFRK 204 (204)
T ss_pred --HHhcCCC----CcCccCHH-HHHHHHHHCCCcc--CcccccCC-C----CeEEEEeC
Confidence 2223333 24545555 5668889999875 33444444 2 26777776
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.48 E-value=4.8e-07 Score=96.21 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+++.|++.+++++. . .++++.
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~--------------~-~~v~~i 92 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA--------------E-DNLTII 92 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc--------------c-CceEEE
Confidence 3456666676778899999999999999999987 599999999999999987551 1 579999
Q ss_pred ECCccccCCCCCCccEEEec
Q 004178 600 DGSITVFDSRLHGFDIGTCL 619 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~ 619 (770)
++|+.+++..+..+|.|+++
T Consensus 93 ~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 93 EGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred EChhhcCCHHHcCcceEEEe
Confidence 99999887643225777765
No 144
>PLN02476 O-methyltransferase
Probab=98.48 E-value=3.6e-06 Score=90.39 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=104.2
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 519 R~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
-.+++...+...++++|||||+|+|+.+..++...++..+|+++|.+++.++.|+++++.. +...+|++
T Consensus 106 ~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-----------Gl~~~I~l 174 (278)
T PLN02476 106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-----------GVSHKVNV 174 (278)
T ss_pred HHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEE
Confidence 3344444555667899999999999999999986545578999999999999999988631 22348999
Q ss_pred EECCcccc-CC-----CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCc
Q 004178 599 FDGSITVF-DS-----RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPD 672 (770)
Q Consensus 599 ~~GDaedl-p~-----~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pd 672 (770)
..||+.+. +. ..+.||+|+.-. -. ..-..+.+.+.+.|+||.+++.. |.+|....
T Consensus 175 i~GdA~e~L~~l~~~~~~~~FD~VFIDa----~K-~~Y~~y~e~~l~lL~~GGvIV~D-----NvL~~G~V--------- 235 (278)
T PLN02476 175 KHGLAAESLKSMIQNGEGSSYDFAFVDA----DK-RMYQDYFELLLQLVRVGGVIVMD-----NVLWHGRV--------- 235 (278)
T ss_pred EEcCHHHHHHHHHhcccCCCCCEEEECC----CH-HHHHHHHHHHHHhcCCCcEEEEe-----cCccCCcc---------
Confidence 99998653 21 136899995433 23 23345556788999999554432 23333211
Q ss_pred hhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEEeeeC
Q 004178 673 EKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFSGVGG 718 (770)
Q Consensus 673 e~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~ 718 (770)
..+ ...+.+ ...++++.+.+...-.+...+..+|+
T Consensus 236 ------~d~-~~~d~~----t~~ir~fn~~v~~d~~~~~~llPigD 270 (278)
T PLN02476 236 ------ADP-LVNDAK----TISIRNFNKKLMDDKRVSISMVPIGD 270 (278)
T ss_pred ------cCc-ccCCHH----HHHHHHHHHHHhhCCCEEEEEEEeCC
Confidence 000 001111 12456665566667788888888886
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=98.47 E-value=9.6e-07 Score=97.74 Aligned_cols=114 Identities=13% Similarity=0.044 Sum_probs=78.7
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~Arkr--L~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
...+++||++|||+|..+..++++. +..+|++||+++++++.|++. +...... ....+++++..+|+.+.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~-------~~~DpRV~vvi~Da~~f 219 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKS-------AFFDNRVNVHVCDAKEF 219 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccc-------cCCCCceEEEECcHHHH
Confidence 3457899999999999999998875 568999999999999999861 1110000 11346899999998763
Q ss_pred -CCCCCCccEEEeccc--cc-cCChhHHHHHHHHHHHcccCCEEEEEe
Q 004178 607 -DSRLHGFDIGTCLEV--IE-HMEEDEASQFGNIVLSSFRPRILIVST 650 (770)
Q Consensus 607 -p~~d~sFDlVVc~eV--LE-HL~~d~~~~fleeI~rvLKPG~LIIST 650 (770)
......||+|++-.. .. ....-....|.+.+.+.|+||.+++..
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 333568999998631 11 111111245667899999999554443
No 146
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.46 E-value=7.6e-07 Score=93.89 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.+++++. ...++++.
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~--------------~~~~v~ii 80 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEI--------------AAGNVEII 80 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhc--------------cCCCEEEE
Confidence 3456666666678999999999999999999986 789999999999999988652 13579999
Q ss_pred ECCccccCCCCCCccEEEecccc
Q 004178 600 DGSITVFDSRLHGFDIGTCLEVI 622 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~eVL 622 (770)
++|+.+++.+ .||.|+++--.
T Consensus 81 ~~D~~~~~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 81 EGDALKVDLP--EFNKVVSNLPY 101 (258)
T ss_pred EeccccCCch--hceEEEEcCCc
Confidence 9999887754 58999886554
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.46 E-value=1.3e-06 Score=98.33 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCcc
Q 004178 516 SKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKS 595 (770)
Q Consensus 516 ~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~ 595 (770)
....++.+.+.+...++.+|||+|||+|.++..|++.. .+|+|+|+++.+++.|++++.. .+..+
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~------------~~~~n 341 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAEL------------NGIAN 341 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHH------------hCCCc
Confidence 33444556666666667899999999999999999876 7899999999999999988742 24468
Q ss_pred EEEEECCccccC----CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 596 AVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 596 Vef~~GDaedlp----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
++++.+|+.+.. .....||+|++.--=.-+ ...+.+.+. .++|+ .++++
T Consensus 342 v~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~----~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 342 VEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC----AAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred eEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC----CHHHHHHHH-hcCCCEEEEEc
Confidence 999999987631 224579999753211111 123444333 47888 55554
No 148
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=8.5e-07 Score=89.92 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=63.7
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcc
Q 004178 525 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 604 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDae 604 (770)
.......+++|+|+|||+|.++...+-.+. .+|+|+|+++++++.++++..+ ...+++|..+|+.
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-------------l~g~v~f~~~dv~ 103 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-------------LLGDVEFVVADVS 103 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-------------hCCceEEEEcchh
Confidence 344556788999999999999998887774 8999999999999999998753 3457999999998
Q ss_pred ccCCCCCCccEEEec
Q 004178 605 VFDSRLHGFDIGTCL 619 (770)
Q Consensus 605 dlp~~d~sFDlVVc~ 619 (770)
++. ..||.|+++
T Consensus 104 ~~~---~~~dtvimN 115 (198)
T COG2263 104 DFR---GKFDTVIMN 115 (198)
T ss_pred hcC---CccceEEEC
Confidence 875 568877774
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.44 E-value=1.9e-06 Score=88.26 Aligned_cols=115 Identities=10% Similarity=0.035 Sum_probs=75.5
Q ss_pred HHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 521 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 521 e~Il~~L~~-~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
+.+.+.+.. ..+.+|||+|||+|.++..++..+. .+|+++|+++.+++.|+++++. .+..+++++
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~------------~~~~~v~~~ 107 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLAT------------LKAGNARVV 107 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHH------------hCCCcEEEE
Confidence 344444432 3567999999999999986444432 7999999999999999988753 233479999
Q ss_pred ECCccccC-CCCCCccEEEeccccccCChhHHHHHHHHHH--HcccCC-EEEEEecC
Q 004178 600 DGSITVFD-SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPN 652 (770)
Q Consensus 600 ~GDaedlp-~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~--rvLKPG-~LIISTPN 652 (770)
++|+.+.. .....||+|++.=-... .......+.+. ++|+|+ .+++.++.
T Consensus 108 ~~D~~~~l~~~~~~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 108 NTNALSFLAQPGTPHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EchHHHHHhhcCCCceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 99986632 22346999987644211 11122222233 347888 77776554
No 150
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=4.9e-07 Score=94.48 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=110.5
Q ss_pred CEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc----cC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV----FD 607 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~g-gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed----lp 607 (770)
.+||+||||.|.....+.+.. .+...|++.|.|+.+++..+++.. ....++.-.+.|+.. -+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-------------~~e~~~~afv~Dlt~~~~~~~ 139 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-------------YDESRVEAFVWDLTSPSLKEP 139 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-------------cchhhhcccceeccchhccCC
Confidence 489999999999999888765 223789999999999999987431 122455555555543 23
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCchhhhhccccccC-C
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN-H 685 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh-~ 685 (770)
...+++|+|+++.||-.+.++.....++++.++|||| .+++-.-.. +.-...++. .++ -..+ ....|. .
T Consensus 140 ~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~-~DlaqlRF~-~~~--~i~~-----nfYVRgDG 210 (264)
T KOG2361|consen 140 PEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR-YDLAQLRFK-KGQ--CISE-----NFYVRGDG 210 (264)
T ss_pred CCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc-chHHHHhcc-CCc--eeec-----ceEEccCC
Confidence 4568999999999999999999999999999999999 555543321 221111221 011 0000 011122 2
Q ss_pred CcccccCHHHHHHHHHHHHHHCCcEEEEEeeeCCCCCCCCccceeeeeecCCCCC
Q 004178 686 DHKFEWTRDQFNCWATELAARHNYSVEFSGVGGSGDREPGFASQIAVFRSRTPPE 740 (770)
Q Consensus 686 DHkfewTreEF~~Wa~~La~r~GY~VEF~GvG~~p~~e~Gf~TQiAVF~R~~~~~ 740 (770)
-...+++.+++.+|. .+.||..+ ...++..+.|.+++..+.
T Consensus 211 T~~YfF~~eeL~~~f----~~agf~~~----------~~~~~~rl~vNr~k~lkm 251 (264)
T KOG2361|consen 211 TRAYFFTEEELDELF----TKAGFEEV----------QLEVDCRLLVNRKKQLKM 251 (264)
T ss_pred ceeeeccHHHHHHHH----Hhcccchh----------cccceeeeeeehhccCcc
Confidence 223678999999766 45565432 234455677777644433
No 151
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.42 E-value=2.1e-06 Score=95.34 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=76.2
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
++.+.+.+....+.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++++.. .+..+++|.
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~------------~~~~~~~~~ 286 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQM------------LGLDNLSFA 286 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHH------------cCCCcEEEE
Confidence 3444455444456799999999999999999765 7899999999999999987742 233489999
Q ss_pred ECCccccCCC-CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 600 DGSITVFDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 600 ~GDaedlp~~-d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.+|+.+.... ...||+|++.=--..+. ..+.+.+. .++|+ .++++.
T Consensus 287 ~~d~~~~~~~~~~~~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 287 ALDSAKFATAQMSAPELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ECCHHHHHHhcCCCCCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe
Confidence 9999764322 24699997752211222 23333333 46888 555553
No 152
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.38 E-value=2.7e-06 Score=85.33 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCc--------eEEEEeCChHHHHHHHHHHhhhhhccc
Q 004178 513 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALE--------KIVGVDISQKSLSRAAKIIHSKLSKKL 584 (770)
Q Consensus 513 PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~--------~VvGVDISeemLe~ArkrL~~~~s~~~ 584 (770)
.|+.+.-...++......++..|||--||+|.++...+....... +++|.|+++++++.|++++...
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----- 84 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----- 84 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----
Confidence 356666666677777777889999999999999977654431112 3899999999999999988642
Q ss_pred ccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccC-C-----hhHHHHHHHHHHHcccCCEEEEEecCCchhHH
Q 004178 585 DAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM-E-----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAI 658 (770)
Q Consensus 585 ~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL-~-----~d~~~~fleeI~rvLKPG~LIISTPN~efN~l 658 (770)
.....+.+.++|+.+++...+.+|+|++.-=...- . ..-...|.+++.+++++..+++++.+..+...
T Consensus 85 ------g~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 85 ------GVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNRELEKA 158 (179)
T ss_dssp ------T-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCHHHH
T ss_pred ------ccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 22346899999999999777899999995322111 1 12224567778899999878888888776655
Q ss_pred Hh
Q 004178 659 LQ 660 (770)
Q Consensus 659 f~ 660 (770)
+.
T Consensus 159 ~~ 160 (179)
T PF01170_consen 159 LG 160 (179)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 153
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.3e-06 Score=93.57 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=57.1
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCc
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 613 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sF 613 (770)
+|||+|||+|..+..++... +..+|+|+|+|+.+++.|++++.. .+..++.++++|+.+.- .+.|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~------------~~l~~~~~~~~dlf~~~--~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER------------NGLVRVLVVQSDLFEPL--RGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH------------cCCccEEEEeeeccccc--CCce
Confidence 89999999999999999987 557999999999999999998753 23345677777654332 2489
Q ss_pred cEEEec
Q 004178 614 DIGTCL 619 (770)
Q Consensus 614 DlVVc~ 619 (770)
|+|||+
T Consensus 178 DlIVsN 183 (280)
T COG2890 178 DLIVSN 183 (280)
T ss_pred eEEEeC
Confidence 999995
No 154
>PRK03612 spermidine synthase; Provisional
Probab=98.36 E-value=2.2e-06 Score=99.21 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHH--HhhhhhcccccCCCCCCCccEEEEECCcccc-
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI--IHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 606 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~Arkr--L~~~~s~~~~~l~pr~~~~~Vef~~GDaedl- 606 (770)
.++++|||+|||+|..+..++++. +..+|+++|+++++++.|+++ +...... .-..++++++.+|+.+.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-------~~~dprv~vi~~Da~~~l 367 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGG-------ALDDPRVTVVNDDAFNWL 367 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhcc-------ccCCCceEEEEChHHHHH
Confidence 357899999999999999998864 347999999999999999883 2211000 01236899999998763
Q ss_pred CCCCCCccEEEeccccccCChh---HHHHHHHHHHHcccCC-EEEEEe
Q 004178 607 DSRLHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 607 p~~d~sFDlVVc~eVLEHL~~d---~~~~fleeI~rvLKPG-~LIIST 650 (770)
....++||+|++...-...+.. ....|.+.+.+.|||| .+++.+
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 2234689999997433222100 0134666799999999 555544
No 155
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.35 E-value=3.5e-06 Score=88.43 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 519 R~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
-.+.+++.+...++.+|||+|||+|.++..|++.+ .+|+|+|+++.+++.+++++. ...++++
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~--------------~~~~v~v 79 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLS--------------LYERLEV 79 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhC--------------cCCcEEE
Confidence 34466666777778999999999999999999987 579999999999999987652 1357999
Q ss_pred EECCccccCCCCCCcc---EEEec
Q 004178 599 FDGSITVFDSRLHGFD---IGTCL 619 (770)
Q Consensus 599 ~~GDaedlp~~d~sFD---lVVc~ 619 (770)
..+|+.+.+.. .|| +|+++
T Consensus 80 ~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 80 IEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred EECchhcCChh--HcCCcceEEEc
Confidence 99999887764 455 55443
No 156
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.32 E-value=2.3e-06 Score=92.41 Aligned_cols=85 Identities=15% Similarity=0.293 Sum_probs=67.9
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+++.+...++.+|||||||.|.++..|++.+ .+|+|+|+++.|++.+++++... ....+++++
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~-----------~~~~~v~ii 90 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNS-----------PLASKLEVI 90 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhc-----------CCCCcEEEE
Confidence 3356666666778999999999999999999876 68999999999999999877421 123579999
Q ss_pred ECCccccCCCCCCccEEEecc
Q 004178 600 DGSITVFDSRLHGFDIGTCLE 620 (770)
Q Consensus 600 ~GDaedlp~~d~sFDlVVc~e 620 (770)
++|+.+.+. ..||.|+++-
T Consensus 91 ~~Dal~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 91 EGDALKTEF--PYFDVCVANV 109 (294)
T ss_pred ECCHhhhcc--cccCEEEecC
Confidence 999987664 4689888743
No 157
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.31 E-value=1.9e-06 Score=102.97 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=75.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC--ccEEEEECCccccC-
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV--KSAVLFDGSITVFD- 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~--~~Vef~~GDaedlp- 607 (770)
++++|||+|||+|.++..++..+. .+|+++|+|+.+++.|++++.. ++. .+++++++|+.+..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~------------ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFAL------------NGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHH------------hCCCccceEEEEccHHHHHH
Confidence 478999999999999999998752 5799999999999999998752 122 37999999986532
Q ss_pred CCCCCccEEEecc-----------ccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 608 SRLHGFDIGTCLE-----------VIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 608 ~~d~sFDlVVc~e-----------VLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.....||+|++.= +.... .....+...+.++|+|| .+++++
T Consensus 604 ~~~~~fDlIilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 604 EAREQFDLIFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred HcCCCcCEEEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 1246899999841 11111 12345566788999999 555543
No 158
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.31 E-value=2.6e-06 Score=87.09 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccchHHHHH----hc---C-CCCCceEEEEeCChHHHHHHHHHH--------------hhhh-hccc-cc
Q 004178 531 CATTLVDFGCGSGSLLDSL----LD---Y-PTALEKIVGVDISQKSLSRAAKII--------------HSKL-SKKL-DA 586 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~L----Ak---~-ggp~~~VvGVDISeemLe~ArkrL--------------~~~~-s~~~-~~ 586 (770)
+.-+|+-+||++|.-...| .+ . .+...+|+|+|||+.+|+.|++-. .++. ...+ .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5679999999999644333 23 1 212469999999999999998621 1111 0000 00
Q ss_pred CCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecC
Q 004178 587 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 652 (770)
Q Consensus 587 l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN 652 (770)
.....-...|+|.+.|+.+.+...+.||+|+|.+|+-+++++....+.+.+.+.|+||.+++.-+.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 000001246899999998855556899999999999999988889999999999999944443333
No 159
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.29 E-value=1.1e-05 Score=85.37 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEE
Q 004178 518 QRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAV 597 (770)
Q Consensus 518 qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Ve 597 (770)
..-+++...++..++++|||||++.|+-+.+++...++..+|+.+|++++..+.|++.+... +...+|+
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----------g~~~~I~ 134 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----------GVAHKID 134 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCceE
Confidence 34455555566667899999999999999999876555689999999999999999988531 2346899
Q ss_pred EEECCccccCCC-------CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 598 LFDGSITVFDSR-------LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 598 f~~GDaedlp~~-------d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
++.|++.+.-.. .++||+|+.- +-.... ..+.+.+.+.|+||.+|+.
T Consensus 135 ~~~G~a~e~L~~l~~~~~~~~~fD~iFiD----adK~~Y-~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 135 FREGPALPVLDQMIEDGKYHGTFDFIFVD----ADKDNY-INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEeccHHHHHHHHHhccccCCcccEEEec----CCHHHh-HHHHHHHHHhcCCCeEEEE
Confidence 999998663211 2689999554 333222 3444567889999955553
No 160
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.26 E-value=3.3e-06 Score=91.03 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=80.9
Q ss_pred CCEEEEEcCccchHHH----HHhcCC---CCCceEEEEeCChHHHHHHHHHHhhh----------hhcccccC-CC----
Q 004178 532 ATTLVDFGCGSGSLLD----SLLDYP---TALEKIVGVDISQKSLSRAAKIIHSK----------LSKKLDAA-VP---- 589 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~----~LAk~g---gp~~~VvGVDISeemLe~ArkrL~~~----------~s~~~~~l-~p---- 589 (770)
.-+|+..||++|.-.. .|.+.. ....+|+|+|||+.+|+.|++-.-.. ...+-... .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999996433 333321 11368999999999999998732110 00000000 00
Q ss_pred ----CCCCccEEEEECCccccCC-CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 590 ----CTDVKSAVLFDGSITVFDS-RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 590 ----r~~~~~Vef~~GDaedlp~-~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
......|+|.+.|+.+.++ ..+.||+|+|.+|+.|++++....+.+.+++.|+|| ++++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0012468999999987543 357899999999999999888888888999999999 55543
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.25 E-value=8e-06 Score=84.93 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+.--+++...+...++++|||||.+.|+-+.+|+...+...+++.+|+++++.+.|++++... +...+|
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-----------g~~~~i 113 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-----------GVDDRI 113 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-----------CCcceE
Confidence 555566666667778999999999999999999988754789999999999999999988642 223458
Q ss_pred EEEE-CCccccCC--CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 597 VLFD-GSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 597 ef~~-GDaedlp~--~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
+++. +|+.+.-. ..++||+|+. .|-..+ -..+.+.+.++|+||.+++.
T Consensus 114 ~~~~~gdal~~l~~~~~~~fDliFI----DadK~~-yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 114 ELLLGGDALDVLSRLLDGSFDLVFI----DADKAD-YPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EEEecCcHHHHHHhccCCCccEEEE----eCChhh-CHHHHHHHHHHhCCCcEEEE
Confidence 8888 57654322 3689999943 344322 23555678899999955554
No 162
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.23 E-value=2.9e-06 Score=93.68 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
......++.+.+.+... +.+|||+|||+|.++..|++.. .+|+|+|+++++++.|++++.. .+.
T Consensus 181 ~~~~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~------------~~~ 244 (353)
T TIGR02143 181 AVNIKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAA------------NNI 244 (353)
T ss_pred HHHHHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHH------------cCC
Confidence 34555666777766532 2479999999999999999876 6999999999999999998742 244
Q ss_pred ccEEEEECCcccc
Q 004178 594 KSAVLFDGSITVF 606 (770)
Q Consensus 594 ~~Vef~~GDaedl 606 (770)
.+++++.+|+.+.
T Consensus 245 ~~v~~~~~d~~~~ 257 (353)
T TIGR02143 245 DNVQIIRMSAEEF 257 (353)
T ss_pred CcEEEEEcCHHHH
Confidence 5799999998763
No 163
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.23 E-value=7.4e-06 Score=85.68 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=66.0
Q ss_pred HHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-E
Q 004178 520 VEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-V 597 (770)
Q Consensus 520 ~e~Il~~L~~-~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V-e 597 (770)
+..+++.... .++++|||+|||+|.++..+++.+ ..+|+|+|+++.|+....+. . +++ .
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~----------------~-~~v~~ 123 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQ----------------D-ERVKV 123 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhc----------------C-CCeeE
Confidence 3334444443 467799999999999999999985 37899999999888763221 1 122 1
Q ss_pred EEECCcc-----ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCc
Q 004178 598 LFDGSIT-----VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 654 (770)
Q Consensus 598 f~~GDae-----dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~e 654 (770)
+...|+. +.+.....+|+++++..+ ++..+.+.|+|| .+++..|.++
T Consensus 124 ~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~----------~l~~i~~~l~~~~~~~L~KPqFE 176 (228)
T TIGR00478 124 LERTNIRYVTPADIFPDFATFDVSFISLIS----------ILPELDLLLNPNDLTLLFKPQFE 176 (228)
T ss_pred eecCCcccCCHhHcCCCceeeeEEEeehHh----------HHHHHHHHhCcCeEEEEcChHhh
Confidence 2223333 232223456766555443 123577888898 6656666644
No 164
>PLN02672 methionine S-methyltransferase
Probab=98.23 E-value=5.7e-06 Score=102.17 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc-ccccC---CCCCCCccEEEEECCccccC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK-KLDAA---VPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~-~~~~l---~pr~~~~~Vef~~GDaedlp 607 (770)
+.+|||+|||+|..+..+++.. +..+|+|+|+|+++++.|++++....-. .+... .......+++|+++|+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 4689999999999999999876 4479999999999999999987531100 00000 00012247999999987644
Q ss_pred CC-CCCccEEEec
Q 004178 608 SR-LHGFDIGTCL 619 (770)
Q Consensus 608 ~~-d~sFDlVVc~ 619 (770)
.. ...||+||++
T Consensus 198 ~~~~~~fDlIVSN 210 (1082)
T PLN02672 198 RDNNIELDRIVGC 210 (1082)
T ss_pred cccCCceEEEEEC
Confidence 22 2369999994
No 165
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.23 E-value=7.2e-06 Score=86.93 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=69.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
...++||||.|.|..+..|+... .+|++.|+|+.|..+-+++ + .+.+ +..+....+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k----------------g---~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK----------------G---FTVL--DIDDWQQTD 149 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC----------------C---CeEE--ehhhhhccC
Confidence 56789999999999999999987 8999999999997665541 1 2222 222233345
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
..||+|.|.+++..-. ++. .+++.+.+.|+|+ .+++
T Consensus 150 ~~fDvIscLNvLDRc~-~P~-~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCD-RPL-TLLRDIRRALKPNGRLIL 186 (265)
T ss_pred CceEEEeehhhhhccC-CHH-HHHHHHHHHhCCCCEEEE
Confidence 6899999999999887 454 4455799999997 4443
No 166
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.22 E-value=4.1e-06 Score=85.35 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=81.4
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-C--CC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D--SR 609 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p--~~ 609 (770)
..+||||||.|.++..+|... |...++|+|+....+..|.+++.. .+..|+.++++|+..+ . ++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~------------~~l~Nv~~~~~da~~~l~~~~~ 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEK------------RGLKNVRFLRGDARELLRRLFP 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHH------------HTTSSEEEEES-CTTHHHHHST
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHh------------hcccceEEEEccHHHHHhhccc
Confidence 389999999999999999887 679999999999999999887753 2567999999998772 1 24
Q ss_pred CCCccEEEeccccccCChh------HHHHHHHHHHHcccCC-EEEEEecCCchhHHH
Q 004178 610 LHGFDIGTCLEVIEHMEED------EASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL 659 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d------~~~~fleeI~rvLKPG-~LIISTPN~efN~lf 659 (770)
++++|.|....-=-|.... ....|++.+.++|+|| .+.+.|-+.+|-...
T Consensus 86 ~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~ 142 (195)
T PF02390_consen 86 PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM 142 (195)
T ss_dssp TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence 5789988665432222210 1146777899999999 888888887665443
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.21 E-value=8.7e-06 Score=89.40 Aligned_cols=128 Identities=13% Similarity=0.179 Sum_probs=95.0
Q ss_pred hcCCch-HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 004178 509 ALFSPP-LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 587 (770)
Q Consensus 509 ~~F~PP-L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l 587 (770)
++|.|. +.+.--..+++.....++..|||-=||||.++....-.+ .+++|.|++..|++-|+.+++.+
T Consensus 174 Pf~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y-------- 242 (347)
T COG1041 174 PFFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYY-------- 242 (347)
T ss_pred CccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhh--------
Confidence 445553 333333455666677788999999999999999888887 89999999999999999988632
Q ss_pred CCCCCCccEEEEEC-CccccCCCCCCccEEEec------cccccCC-hhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 588 VPCTDVKSAVLFDG-SITVFDSRLHGFDIGTCL------EVIEHME-EDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 588 ~pr~~~~~Vef~~G-Daedlp~~d~sFDlVVc~------eVLEHL~-~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+.....++.+ |+..+|++...||.|++- ..+.-.. ++-...+++.+.++||+| .+++.+|
T Consensus 243 ----~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 243 ----GIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ----CcCceeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 2345656666 999999887789999982 1121111 133456677899999998 7888888
No 168
>PRK04148 hypothetical protein; Provisional
Probab=98.20 E-value=1.2e-05 Score=77.84 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=64.3
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
+++.+.+...++.++||||||.|. ++..|++.+ .+|+|+|+++..++.|+++ .+.+.
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~-------------------~~~~v 63 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKL-------------------GLNAF 63 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHh-------------------CCeEE
Confidence 456666666567899999999996 888898877 8999999999999988662 36888
Q ss_pred ECCccccCCC-CCCccEEEecccc
Q 004178 600 DGSITVFDSR-LHGFDIGTCLEVI 622 (770)
Q Consensus 600 ~GDaedlp~~-d~sFDlVVc~eVL 622 (770)
.+|+.+.+.. -..+|+|.++---
T Consensus 64 ~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 64 VDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred ECcCCCCCHHHHhcCCEEEEeCCC
Confidence 9999887765 3689999876543
No 169
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.17 E-value=5.5e-06 Score=91.79 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK 594 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~ 594 (770)
..+..++++.+.+... +.+|||++||+|.++..|++.. .+|+|+|+++.+++.|++++.. .+..
T Consensus 191 ~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~------------~~~~ 254 (362)
T PRK05031 191 VNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAA------------NGID 254 (362)
T ss_pred HHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHH------------hCCC
Confidence 3445555666655432 3579999999999999999876 6999999999999999988742 2345
Q ss_pred cEEEEECCccc
Q 004178 595 SAVLFDGSITV 605 (770)
Q Consensus 595 ~Vef~~GDaed 605 (770)
+++|+.+|+.+
T Consensus 255 ~v~~~~~d~~~ 265 (362)
T PRK05031 255 NVQIIRMSAEE 265 (362)
T ss_pred cEEEEECCHHH
Confidence 89999999866
No 170
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.14 E-value=1.9e-05 Score=78.77 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHH------hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 004178 514 PLSKQRVEYALQH------IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 587 (770)
Q Consensus 514 PL~~qR~e~Il~~------L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l 587 (770)
|-......++.+. ....++.+|||+|||+|..+..++... ...+|+..|..+ .++..+.++.....
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~------ 93 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS------ 93 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc------
Confidence 4444444555553 345578999999999999999999883 238999999998 99988887753210
Q ss_pred CCCCCCccEEEEECCccccC----CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 588 VPCTDVKSAVLFDGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 588 ~pr~~~~~Vef~~GDaedlp----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
....++.+...|..+.. .....||+|++.+++..- +....|.+.+.++|+|+ .+++..+.
T Consensus 94 ---~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 94 ---LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp ---------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred ---cccccccCcEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 12345677666653311 134689999999999653 56678888899999997 55555544
No 171
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.03 E-value=2e-05 Score=86.43 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=75.5
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC-ccEEEEECCcccc
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV-KSAVLFDGSITVF 606 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~-~~Vef~~GDaedl 606 (770)
...+++.|||+|||+|.+...-|+.|. .+|+|||.|.- ++.|++.+.. ++. ..|++.+|.++++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~i-a~~a~~iv~~------------N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSI-ADFARKIVKD------------NGLEDVITVIKGKVEDI 121 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHH-HHHHHHHHHh------------cCccceEEEeecceEEE
Confidence 345789999999999999999999884 89999997664 4888876642 233 3589999999987
Q ss_pred CCCCCCccEEEeccccccCC-hhHHHHHHHHHHHcccCCEEEEEec
Q 004178 607 DSRLHGFDIGTCLEVIEHME-EDEASQFGNIVLSSFRPRILIVSTP 651 (770)
Q Consensus 607 p~~d~sFDlVVc~eVLEHL~-~d~~~~fleeI~rvLKPG~LIISTP 651 (770)
..+...+|+|++-+.=..+- +.-+..++-.=-+.|+||.+++.+-
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 66678999999854332221 1111222211246899986665443
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.03 E-value=1.7e-05 Score=86.77 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=57.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE-CCccccC--
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFD-- 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~-GDaedlp-- 607 (770)
...++||||||+|.....|+... +..+++|+||++.+++.|++++.... ....+|++.. .+..++.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np----------~l~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANP----------GLNGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcc----------CCcCcEEEEEccchhhhhhc
Confidence 45799999999998877776553 24799999999999999999885310 1223677754 3433322
Q ss_pred --CCCCCccEEEecccc
Q 004178 608 --SRLHGFDIGTCLEVI 622 (770)
Q Consensus 608 --~~d~sFDlVVc~eVL 622 (770)
.....||+|+|+==+
T Consensus 183 i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 183 IIHKNERFDATLCNPPF 199 (321)
T ss_pred ccccCCceEEEEeCCCC
Confidence 235689999997544
No 173
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.01 E-value=2e-05 Score=81.25 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 513 PPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 513 PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
-.+...-+..+++.++..+.+..+|||||.|......+-.. +..+.+||++.+...+.|+............. ...
T Consensus 24 GEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~---g~~ 99 (205)
T PF08123_consen 24 GEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHY---GKR 99 (205)
T ss_dssp GGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC---TB-
T ss_pred eecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHh---hcc
Confidence 34555556667777888888999999999999987666544 23679999999998888876443322111000 122
Q ss_pred CccEEEEECCccccCCC---CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecC
Q 004178 593 VKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 652 (770)
Q Consensus 593 ~~~Vef~~GDaedlp~~---d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN 652 (770)
..++++.+||+.+.+.. ...-|+|+++... ++++-...+ ..++.-||+|..||++..
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L-~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLAL-AELLLELKPGARIISTKP 159 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHH-HHHHTTS-TT-EEEESS-
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHH-HHHHhcCCCCCEEEECCC
Confidence 45789999998765431 1457999998774 454444555 458888999955666644
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=9.5e-06 Score=79.42 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
.+..-++..|-+-.....+++++|+|||.|-+....+... ...|+|+||++++++.+.++.... .
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeEf-------------E 95 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEEF-------------E 95 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHHh-------------h
Confidence 3555555666666677789999999999999997666554 378999999999999998876532 2
Q ss_pred ccEEEEECCccccCCCCCCccEEEecccc
Q 004178 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVI 622 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d~sFDlVVc~eVL 622 (770)
-+++++++|+.++.+..+.||.++..--+
T Consensus 96 vqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 96 VQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred hhhheeeeeccchhccCCeEeeEEecCCC
Confidence 36799999999988877889999876443
No 175
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=3.5e-05 Score=87.55 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
...+..++++.+.+...++++|||+=||.|.++..||+.. .+|+|+|+++++++.|++++. .++.
T Consensus 276 ~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~------------~n~i 340 (432)
T COG2265 276 AVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAA------------ANGI 340 (432)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHH------------HcCC
Confidence 4667788889999998888999999999999999999877 899999999999999999875 3466
Q ss_pred ccEEEEECCccccCCCC---CCccEEEeccccccCChhH---HHHHHHHHHHcccCC-EEEEEecC
Q 004178 594 KSAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDE---ASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d---~sFDlVVc~eVLEHL~~d~---~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.|++|..++++++.... ..+|.|+. +++. ...+.+.+.+ ++|. +++|+.--
T Consensus 341 ~N~~f~~~~ae~~~~~~~~~~~~d~Vvv-------DPPR~G~~~~~lk~l~~-~~p~~IvYVSCNP 398 (432)
T COG2265 341 DNVEFIAGDAEEFTPAWWEGYKPDVVVV-------DPPRAGADREVLKQLAK-LKPKRIVYVSCNP 398 (432)
T ss_pred CcEEEEeCCHHHHhhhccccCCCCEEEE-------CCCCCCCCHHHHHHHHh-cCCCcEEEEeCCH
Confidence 78999999998876543 57899853 2111 1244444444 4554 77776543
No 176
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.97 E-value=3.6e-05 Score=80.56 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=88.8
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 527 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 527 L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
........+||||||.|.++..+|+.. |...++|||+....+..|.+++.+ .+..|+.++++|+..+
T Consensus 44 f~~~~~pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~------------~~l~Nlri~~~DA~~~ 110 (227)
T COG0220 44 FGNNNAPIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKE------------LGLKNLRLLCGDAVEV 110 (227)
T ss_pred hCCCCCcEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHH------------cCCCcEEEEcCCHHHH
Confidence 333334689999999999999999987 778999999999999999887753 2444999999998764
Q ss_pred C---CCCCCccEEEeccccccCCh------hHHHHHHHHHHHcccCC-EEEEEecCCchhHH
Q 004178 607 D---SRLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 658 (770)
Q Consensus 607 p---~~d~sFDlVVc~eVLEHL~~------d~~~~fleeI~rvLKPG-~LIISTPN~efN~l 658 (770)
- +++++.|-|....-=-|-.. =....|++.+.+.|+|| .+.+.|-+.+|-..
T Consensus 111 l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 111 LDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred HHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 2 24568998876543222210 01246777899999998 88899988776554
No 177
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.97 E-value=4.6e-05 Score=81.57 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=83.2
Q ss_pred CCCEEEEEcCccch----HHHHHhcCCC----CCceEEEEeCChHHHHHHHHHHhh-h----------hhcccccCCC--
Q 004178 531 CATTLVDFGCGSGS----LLDSLLDYPT----ALEKIVGVDISQKSLSRAAKIIHS-K----------LSKKLDAAVP-- 589 (770)
Q Consensus 531 ~~~rVLDIGCGtG~----ll~~LAk~gg----p~~~VvGVDISeemLe~ArkrL~~-~----------~s~~~~~l~p-- 589 (770)
..-+|+-+||++|. ++..|.+..+ ...+|+|.|||..+|+.|+.-.-+ . ..++-+...+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 3333444432 247999999999999999752211 0 0000000000
Q ss_pred ----CCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 590 ----CTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 590 ----r~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
..-...|.|.+.|+.+-++..+.||+|+|-+|+-+++.+....+.+.++..|+|| ++++.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0012357889999877664568899999999999999888889999999999999 55553
No 178
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.96 E-value=0.0003 Score=75.88 Aligned_cols=110 Identities=13% Similarity=0.135 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEECCccccC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFD 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp-~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V-ef~~GDaedlp 607 (770)
..+-+||||.||.|+.........+. ...|.-.|.|+..++..++.+.+ .+..++ +|.++|+.+..
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------------~gL~~i~~f~~~dAfd~~ 201 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------------RGLEDIARFEQGDAFDRD 201 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------------cCCccceEEEecCCCCHh
Confidence 46789999999999987766655422 36899999999999999987753 344455 99999986642
Q ss_pred C---CCCCccEEEeccccccCChhH-HHHHHHHHHHcccCCEEEEEec
Q 004178 608 S---RLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPRILIVSTP 651 (770)
Q Consensus 608 ~---~d~sFDlVVc~eVLEHL~~d~-~~~fleeI~rvLKPG~LIISTP 651 (770)
. -.-..++++.++++|.+++.. ....+.-+.+.+.||.++|.|-
T Consensus 202 ~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 202 SLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred HhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 2 234579999999999999755 3444567999999995545443
No 179
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.95 E-value=1.6e-05 Score=86.14 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
++.+++.+...++..+||.+||.|..+..+++..++..+|+|+|.++++++.|++++. . ..+++++
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~-------------~-~~ri~~i 73 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK-------------P-FGRFTLV 73 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc-------------c-CCcEEEE
Confidence 4456677776778899999999999999999987556899999999999999998763 1 3479999
Q ss_pred ECCccccCCC----CCCccEEEec
Q 004178 600 DGSITVFDSR----LHGFDIGTCL 619 (770)
Q Consensus 600 ~GDaedlp~~----d~sFDlVVc~ 619 (770)
++|..++... ..++|+|++.
T Consensus 74 ~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 74 HGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred eCCHHHHHHHHHcCCCccCEEEEC
Confidence 9998765321 1279999873
No 180
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.92 E-value=6.1e-05 Score=80.60 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=75.3
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
....+.+|||+|||.|..+....+..+...+++++|.|+.|++.++..+.... ......+......+.
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~- 97 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP-----------NNRNAEWRRVLYRDF- 97 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc-----------ccccchhhhhhhccc-
Confidence 34567899999999999887777655456899999999999999987654221 111111111111111
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCC
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 653 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~ 653 (770)
......|+|++.++|..+++.....+.+.+.+.+.+ .+++..|..
T Consensus 98 ~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 98 LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 111234999999999999976677777777777766 666666653
No 181
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.92 E-value=2.9e-05 Score=85.82 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
....+.++++++.+...+. +|||+-||.|.++..|++.. .+|+|||+++++++.|++++.. ++.
T Consensus 180 ~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~------------N~i 243 (352)
T PF05958_consen 180 EQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKL------------NGI 243 (352)
T ss_dssp HHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHH------------TT-
T ss_pred HHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHH------------cCC
Confidence 4667778888888887655 89999999999999999988 8999999999999999998752 456
Q ss_pred ccEEEEECCcccc
Q 004178 594 KSAVLFDGSITVF 606 (770)
Q Consensus 594 ~~Vef~~GDaedl 606 (770)
.+++|..++++++
T Consensus 244 ~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 244 DNVEFIRGDAEDF 256 (352)
T ss_dssp -SEEEEE--SHHC
T ss_pred CcceEEEeeccch
Confidence 7899999887654
No 182
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.92 E-value=0.00015 Score=62.60 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc--cCCCC-C
Q 004178 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV--FDSRL-H 611 (770)
Q Consensus 535 VLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed--lp~~d-~ 611 (770)
++|+|||.|... .++........++|+|+++.++..++..... . ....+.+..++... .++.. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A-----------GLGLVDFVVADALGGVLPFEDSA 118 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-----------CCCceEEEEeccccCCCCCCCCC
Confidence 999999999965 3333331114899999999999985543210 0 01116888888776 66665 4
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCc
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 654 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~e 654 (770)
.||++ +.....|... ......++.+.++|+ .+++...+..
T Consensus 119 ~~d~~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 119 SFDLV-ISLLVLHLLP--PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred ceeEE-eeeeehhcCC--HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 89999 5555444442 445556799999997 6666666543
No 183
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.91 E-value=0.00057 Score=78.58 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=85.1
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+|||++||.|.=+..++...+....|+++|+++.-++..++++++ .+..++.+...|...+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r------------~G~~nv~v~~~D~~~~~ 177 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR------------CGVSNVALTHFDGRVFG 177 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH------------cCCCeEEEEeCchhhhh
Confidence 556789999999999999998887654457999999999999999988863 35568888888987654
Q ss_pred C-CCCCccEEE----ec--cccccCCh--------------hHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 608 S-RLHGFDIGT----CL--EVIEHMEE--------------DEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 608 ~-~d~sFDlVV----c~--eVLEHL~~--------------d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
. ....||.|+ |+ +++..-++ .....++..+.++|||| .++-+|...
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 2 235799999 54 34433221 11246667789999999 777777653
No 184
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.2e-05 Score=77.68 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCC-CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPT-ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD 592 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~gg-p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~ 592 (770)
.+|..-++++... ..++.+.||+|.|+|+++..++...+ +...++|||.-++.++.+++++......- +. .....
T Consensus 67 ~mha~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~-e~-~~~~~ 142 (237)
T KOG1661|consen 67 HMHATALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS-ES-SSKLK 142 (237)
T ss_pred HHHHHHHHHHHHh--hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc-hh-hhhhc
Confidence 3555444444443 44689999999999999988875432 33445999999999999999987654210 00 00123
Q ss_pred CccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 593 VKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 593 ~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
..++.+..||......+...||.|.|...-.-++ +++...|+|| .++|..-
T Consensus 143 ~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~p--------q~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAEQAPYDAIHVGAAASELP--------QELLDQLKPGGRLLIPVG 194 (237)
T ss_pred cCceEEEeCCccccCCccCCcceEEEccCccccH--------HHHHHhhccCCeEEEeec
Confidence 4578899999998888889999997764433332 4566688887 7776544
No 185
>PLN02823 spermine synthase
Probab=97.89 E-value=0.0001 Score=81.25 Aligned_cols=106 Identities=22% Similarity=0.186 Sum_probs=75.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-CCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-DSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p~~ 609 (770)
.+++||.||+|.|..++.++++. +..+|+.||+++++++.|++.+..... ....++++++.+|+... ...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--------~~~dprv~v~~~Da~~~L~~~ 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--------AFCDKRLELIINDARAELEKR 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--------cccCCceEEEEChhHHHHhhC
Confidence 57899999999999999988865 457899999999999999986631100 11346899999998764 333
Q ss_pred CCCccEEEeccc-------cccCChhHHHHHHH-HHHHcccCCEEEE
Q 004178 610 LHGFDIGTCLEV-------IEHMEEDEASQFGN-IVLSSFRPRILIV 648 (770)
Q Consensus 610 d~sFDlVVc~eV-------LEHL~~d~~~~fle-eI~rvLKPG~LII 648 (770)
.+.||+|++-.. ..++. -..|.+ .+.+.|+||.+++
T Consensus 174 ~~~yDvIi~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 174 DEKFDVIIGDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred CCCccEEEecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEE
Confidence 468999997521 11121 124555 6899999994443
No 186
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.87 E-value=5.6e-05 Score=84.64 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=76.8
Q ss_pred HHHHHhhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 522 YALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 522 ~Il~~L~~~-~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
.+++.+... +..+|||++||+|.++..++...+ ..+|+++|+++.+++.++++++. ++..++++.+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~------------N~~~~~~v~~ 113 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLEL------------NGLENEKVFN 113 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH------------hCCCceEEEh
Confidence 344444332 346899999999999999987652 35899999999999999998742 2345678999
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
+|+..+......||+|++.= . -. . ..++....+.+++| ++.++.
T Consensus 114 ~Da~~~l~~~~~fD~V~lDP-~-Gs---~-~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 114 KDANALLHEERKFDVVDIDP-F-GS---P-APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred hhHHHHHhhcCCCCEEEECC-C-CC---c-HHHHHHHHHHhcCCCEEEEEe
Confidence 99876432135699997742 2 11 1 24444556678888 777773
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=0.00024 Score=72.07 Aligned_cols=108 Identities=10% Similarity=-0.077 Sum_probs=69.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-C-
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF-D- 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl-p- 607 (770)
..+.+|||++||+|.++..++.++. .+|+++|.++.+++.+++++... ....+++++++|+... .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~-----------~~~~~~~~~~~D~~~~l~~ 114 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALL-----------KSGEQAEVVRNSALRALKF 114 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHh-----------CCcccEEEEehhHHHHHHH
Confidence 3578999999999999999998873 58999999999999999887532 1123689999998543 2
Q ss_pred C-CCC-CccEEEeccccc-cCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 608 S-RLH-GFDIGTCLEVIE-HMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 608 ~-~d~-sFDlVVc~eVLE-HL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
. ... .||+|+.-=-.. ....+....+. -..+|+++ .+++..+.
T Consensus 115 ~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~--~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 115 LAKKPTFDNVIYLDPPFFNGALQALLELCE--NNWILEDTVLIVVEEDR 161 (189)
T ss_pred hhccCCCceEEEECcCCCCCcHHHHHHHHH--HCCCCCCCeEEEEEecC
Confidence 1 112 367776521111 11111122221 13468888 66665544
No 188
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.85 E-value=0.00013 Score=73.04 Aligned_cols=106 Identities=10% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+....+.-|||+|.|+|-++..++.++-+...++.++.|+++...-.++. +.+.++.|
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------------p~~~ii~g 101 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------------PGVNIING 101 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------------CCcccccc
Confidence 3445667778899999999999999999998867789999999999998876643 45678999
Q ss_pred CccccC-----CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 602 SITVFD-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 602 Daedlp-----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
|+.++. ..+..||.|+|.--+-.++....-++++.+...|.+|
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 987765 2356799999998888888777788888899999998
No 189
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=2.3e-05 Score=81.61 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
....++|||||-|.....|...+ ..+++-+|.|-.|++.++..- ...-.+..+++|-+.+++.+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q--------------dp~i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ--------------DPSIETSYFVGDEEFLDFKE 135 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC--------------CCceEEEEEecchhcccccc
Confidence 45689999999999999998775 589999999999999997611 11224678889999999999
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
++||+|+++..+||+. +-...+. .+...|||+.++|.
T Consensus 136 ns~DLiisSlslHW~N-dLPg~m~-~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTN-DLPGSMI-QCKLALKPDGLFIA 172 (325)
T ss_pred cchhhhhhhhhhhhhc-cCchHHH-HHHHhcCCCccchh
Confidence 9999999999999887 3334455 59999999855553
No 190
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.83 E-value=0.00014 Score=82.96 Aligned_cols=105 Identities=12% Similarity=0.137 Sum_probs=67.5
Q ss_pred CCEEEEEcCccchHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~g---gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
+..|+|||||+|-+....++.+ +...+|++|+-++.++...++++.. .+-..+|+++++|+++...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-----------n~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-----------NGWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-----------TTTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-----------cCCCCeEEEEeCcccCCCC
Confidence 5789999999999987666543 1237999999999888777665432 1223579999999999876
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII 648 (770)
+ ..+|+||+=..=-....+-....+....+.||||.++|
T Consensus 256 p-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 256 P-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred C-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5 59999988221111111122233445788999985554
No 191
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.82 E-value=0.00022 Score=78.18 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=79.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE--EECCccc
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL--FDGSITV 605 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~g---gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef--~~GDaed 605 (770)
++..|+|+|||+|.-+..|++.. +....+++||||.++|+.+.+++.. ...+.+++ +.||..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------------~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------------GNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------------ccCCCeEEEEEEecHHH
Confidence 45689999999998766554322 1236799999999999999987741 12344544 7888755
Q ss_pred c----CC--CCCCccEEEecc-ccccCChhHHHHHHHHHHH-cccCC-EEEEEe
Q 004178 606 F----DS--RLHGFDIGTCLE-VIEHMEEDEASQFGNIVLS-SFRPR-ILIVST 650 (770)
Q Consensus 606 l----p~--~d~sFDlVVc~e-VLEHL~~d~~~~fleeI~r-vLKPG-~LIIST 650 (770)
. +. ......+|+..+ +|..+++++...|++.+.+ .|+|| .++|..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 2 21 123467777765 8999999999999999999 99998 776654
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=8.1e-05 Score=79.30 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+++.++..+++.|||||+|.|.++..|++.+ .+|+++++++.+++..++++. ...+++++
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--------------~~~n~~vi 81 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--------------PYDNLTVI 81 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--------------cccceEEE
Confidence 4567777777778999999999999999999998 789999999999999887652 34689999
Q ss_pred ECCccccCCCCC-CccEEEec
Q 004178 600 DGSITVFDSRLH-GFDIGTCL 619 (770)
Q Consensus 600 ~GDaedlp~~d~-sFDlVVc~ 619 (770)
++|+...++... .++.|+++
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred eCchhcCcchhhcCCCEEEEc
Confidence 999998887633 57777664
No 193
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.77 E-value=1.7e-05 Score=90.39 Aligned_cols=101 Identities=19% Similarity=0.209 Sum_probs=68.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEE---eCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGV---DISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGV---DISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.-..+||+|||.|.|+.+|+++. -.++.+ |..+..++.|.++ +.+-+ +-......+|
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR----------------Gvpa~-~~~~~s~rLP 176 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER----------------GVPAM-IGVLGSQRLP 176 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc----------------Ccchh-hhhhcccccc
Confidence 34578999999999999999876 333332 4445567777552 11111 1111235789
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++++.||+|.|..++-....+....++ ++-|+|+|| +++.+.|-
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~-evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLF-EVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred CCccchhhhhcccccccchhcccceee-hhhhhhccCceEEecCCc
Confidence 999999999999887665544444444 699999999 66666654
No 194
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.74 E-value=8.8e-05 Score=76.71 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHhhcCC-CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 520 VEYALQHIKESC-ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 520 ~e~Il~~L~~~~-~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
++.+++.+...+ ...|.|+|||++.++..+.+. .+|...|+-. ..+. +
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~----~~V~SfDLva-------------------------~n~~--V 108 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK----HKVHSFDLVA-------------------------PNPR--V 108 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS--------------------------SSTT--E
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC----ceEEEeeccC-------------------------CCCC--E
Confidence 345666665544 569999999999999766432 5799999642 0123 4
Q ss_pred EECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 599 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 599 ~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
..+|+...|.+++++|++|+.-.|.--. ...|++++.|+|||| .+.|....
T Consensus 109 tacdia~vPL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 109 TACDIANVPLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEecCccCcCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEec
Confidence 5689999999999999999988875443 556777899999998 77775443
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.73 E-value=0.00013 Score=75.14 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=73.8
Q ss_pred hhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc
Q 004178 507 EQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA 586 (770)
Q Consensus 507 e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~ 586 (770)
....|.|.+...|.... +.+ .++.+|+|+.||-|.++..+++.. ....|+++|+++.+++..++++...
T Consensus 80 ~kvyfs~rl~~Er~Ri~-~~v--~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lN------- 148 (200)
T PF02475_consen 80 SKVYFSPRLSTERRRIA-NLV--KPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLN------- 148 (200)
T ss_dssp TTS---GGGHHHHHHHH-TC----TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHT-------
T ss_pred ceEEEccccHHHHHHHH-hcC--CcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHc-------
Confidence 35567777887776544 333 347899999999999999999843 2378999999999999999887531
Q ss_pred CCCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCE
Q 004178 587 AVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 645 (770)
Q Consensus 587 l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~ 645 (770)
+...++..+++|+.++.. ...||.|++..- ++. ..|+..+.+++++|.
T Consensus 149 ----kv~~~i~~~~~D~~~~~~-~~~~drvim~lp-~~~-----~~fl~~~~~~~~~~g 196 (200)
T PF02475_consen 149 ----KVENRIEVINGDAREFLP-EGKFDRVIMNLP-ESS-----LEFLDAALSLLKEGG 196 (200)
T ss_dssp ----T-TTTEEEEES-GGG----TT-EEEEEE--T-SSG-----GGGHHHHHHHEEEEE
T ss_pred ----CCCCeEEEEcCCHHHhcC-ccccCEEEECCh-HHH-----HHHHHHHHHHhcCCc
Confidence 122468999999988876 688999877532 111 134445777888773
No 196
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.68 E-value=0.00024 Score=70.97 Aligned_cols=112 Identities=16% Similarity=0.189 Sum_probs=71.2
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--C
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--L 610 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d 610 (770)
..|+|+.||.|..+..+|+.+ .+|+++|+++..++.|+.+++-+ +...+|+++++|..++... .
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vY-----------Gv~~~I~~i~gD~~~~~~~~~~ 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVY-----------GVADNIDFICGDFFELLKRLKS 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHT-----------T-GGGEEEEES-HHHHGGGB--
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHc-----------CCCCcEEEEeCCHHHHHhhccc
Confidence 369999999999999999987 89999999999999999987543 1245899999998775432 1
Q ss_pred CC-ccEEEec-------------ccc-ccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHH
Q 004178 611 HG-FDIGTCL-------------EVI-EHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 659 (770)
Q Consensus 611 ~s-FDlVVc~-------------eVL-EHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf 659 (770)
.. ||+|++. .-| .++.+-....+.+ ..+.+.+.+++.--.|.+.+.+.
T Consensus 67 ~~~~D~vFlSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~-~~~~~t~nv~l~LPRn~dl~ql~ 129 (163)
T PF09445_consen 67 NKIFDVVFLSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLK-AARKITPNVVLFLPRNSDLNQLS 129 (163)
T ss_dssp ----SEEEE---BSSGGGGGSSSB-TTTSSSS--HHHHHH-HHHHH-S-EEEEEETTB-HHHHH
T ss_pred cccccEEEECCCCCCccccccCccCHHHccCCCCHHHHHH-HHHhhCCCEEEEeCCCCCHHHHH
Confidence 12 8999972 112 4454434566665 44555666555555666665554
No 197
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.68 E-value=0.00021 Score=78.51 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=77.9
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc-cCCCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDSRL 610 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed-lp~~d 610 (770)
....+|+|.|.|..+..+.... .+|-|++++...+..++..+ . +.|+.+-||..+ .|.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~---------------~-~gV~~v~gdmfq~~P~-- 236 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYL---------------A-PGVEHVAGDMFQDTPK-- 236 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhh---------------c-CCcceecccccccCCC--
Confidence 4789999999999999998866 57999999998888876644 1 348888888644 332
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEE
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIS 649 (770)
-|+|++-+++||+.+++...|++++...|+|| .+++.
T Consensus 237 --~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 237 --GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred --cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 35999999999999999999999999999998 55553
No 198
>PRK00536 speE spermidine synthase; Provisional
Probab=97.66 E-value=0.00035 Score=74.69 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=73.3
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
-..+++||=+|-|.|..++.++++. .+|+-|||++++++.+++.+...... -..++++++.. +.+ .
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~~-~~~--~ 135 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAKQ-LLD--L 135 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEeeh-hhh--c
Confidence 3468999999999999999999996 59999999999999999866543222 23467877752 211 1
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
..+.||+|+.-.. . + ..|.+.+.+.|+||.++++
T Consensus 136 ~~~~fDVIIvDs~----~-~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 136 DIKKYDLIICLQE----P-D--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCcCCEEEEcCC----C-C--hHHHHHHHHhcCCCcEEEE
Confidence 2368999987643 2 1 2455679999999955553
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.65 E-value=0.00039 Score=83.46 Aligned_cols=138 Identities=16% Similarity=0.060 Sum_probs=89.6
Q ss_pred CCchHHHHHHHHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCC---C--------------------------------
Q 004178 511 FSPPLSKQRVEYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYP---T-------------------------------- 554 (770)
Q Consensus 511 F~PPL~~qR~e~Il~~L~~-~~~~rVLDIGCGtG~ll~~LAk~g---g-------------------------------- 554 (770)
...|+.+.-...++..... .++..++|.+||+|.+++..+... .
T Consensus 169 ~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 169 GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 3446777666666665554 457899999999999998765421 0
Q ss_pred ------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--CCCccEEEecccc-ccC
Q 004178 555 ------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVI-EHM 625 (770)
Q Consensus 555 ------p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d~sFDlVVc~eVL-EHL 625 (770)
...+++|+|+++.+++.|++++... +....+++.++|+.+++.. .+.||+|+++==. +.+
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~-----------g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~ 317 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRA-----------GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERL 317 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHc-----------CCCcceEEEeCChhhcccccccCCCCEEEECCCCcCcc
Confidence 0136999999999999999988531 1223589999999887654 2579999997221 122
Q ss_pred C-hhHHHHHHHHHHHcc---cCC-EEEEEecCCchhHHH
Q 004178 626 E-EDEASQFGNIVLSSF---RPR-ILIVSTPNYEYNAIL 659 (770)
Q Consensus 626 ~-~d~~~~fleeI~rvL---KPG-~LIISTPN~efN~lf 659 (770)
. ......+.+.+...+ .+| .+++.|++.++...+
T Consensus 318 ~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 318 GEEPALIALYSQLGRRLKQQFGGWNAALFSSSPELLSCL 356 (702)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence 2 122222322333333 378 777888886655444
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00035 Score=75.41 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=80.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-C
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-R 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-~ 609 (770)
.+++||-||-|.|..++.++++. +..+++.|||+++.++.|++.+...... ...++++++.+|..+.-. .
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHHHHhC
Confidence 34799999999999999999997 6799999999999999999976432111 124789999999876433 2
Q ss_pred CCCccEEEeccccccCChh---HHHHHHHHHHHcccCCEEEEEe
Q 004178 610 LHGFDIGTCLEVIEHMEED---EASQFGNIVLSSFRPRILIVST 650 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d---~~~~fleeI~rvLKPG~LIIST 650 (770)
...||+|++-..=. ..+. .-..|.+.+.+.|+++.++++-
T Consensus 147 ~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 34799998743322 1110 0246667899999998555543
No 201
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.62 E-value=0.00049 Score=66.29 Aligned_cols=86 Identities=23% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCccchHHHHHhc-----CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcc
Q 004178 530 SCATTLVDFGCGSGSLLDSLLD-----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 604 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk-----~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDae 604 (770)
.+..+|+|+|||.|+++..|+. . +..+|+|||.++..++.|.++...... ....++.+..+++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGS---------DLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcc---------hhhccchhhccchh
Confidence 5678999999999999999988 4 348999999999999999887643210 11245677777665
Q ss_pred ccCCCCCCccEEEeccccccCCh
Q 004178 605 VFDSRLHGFDIGTCLEVIEHMEE 627 (770)
Q Consensus 605 dlp~~d~sFDlVVc~eVLEHL~~ 627 (770)
+... ....++++..++-.-+.+
T Consensus 93 ~~~~-~~~~~~~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 93 DESS-SDPPDILVGLHACGDLSD 114 (141)
T ss_pred hhcc-cCCCeEEEEeecccchHH
Confidence 4432 467888888887776663
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.59 E-value=0.00022 Score=82.66 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=85.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC--C
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--S 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp--~ 608 (770)
....+||||||.|.++..+|... |...++|+|+....+..|.+++. ..+..|+.++.+|+..+. +
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~------------~~~l~N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAG------------EQNITNFLLFPNNLDLILNDL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHH------------HcCCCeEEEEcCCHHHHHHhc
Confidence 46789999999999999999987 67899999999998888877653 235678989888875332 3
Q ss_pred CCCCccEEEeccccccCCh------hHHHHHHHHHHHcccCC-EEEEEecCCchhHH
Q 004178 609 RLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI 658 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~------d~~~~fleeI~rvLKPG-~LIISTPN~efN~l 658 (770)
+++++|.|...+-=-|... =....|++.+.++|||| .+.+.|-+.+|...
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~ 470 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 4678999877554333221 01246777899999999 88888887665443
No 203
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.58 E-value=0.00039 Score=75.94 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=72.9
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
...++.|||+|||+|.+....+..+. .+|++|+. .+|.+.|++.+.. .....+|+++.|-+++...
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEA-S~MAqyA~~Lv~~-----------N~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEA-SEMAQYARKLVAS-----------NNLADRITVIPGKIEDIEL 240 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEeh-hHHHHHHHHHHhc-----------CCccceEEEccCccccccC
Confidence 34678999999999999998888774 89999995 5689999886642 2234689999999998876
Q ss_pred CCCCccEEEeccccc-cCChhHHHHHHHHHHHcccCCE
Q 004178 609 RLHGFDIGTCLEVIE-HMEEDEASQFGNIVLSSFRPRI 645 (770)
Q Consensus 609 ~d~sFDlVVc~eVLE-HL~~d~~~~fleeI~rvLKPG~ 645 (770)
+ ...|+|++--.=. -+.+.-++.+. ...+.|||..
T Consensus 241 P-Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~G 276 (517)
T KOG1500|consen 241 P-EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNG 276 (517)
T ss_pred c-hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCC
Confidence 5 7899998732211 11222334444 3679999973
No 204
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00035 Score=74.74 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhc---CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC
Q 004178 515 LSKQRVEYALQHIKE---SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT 591 (770)
Q Consensus 515 L~~qR~e~Il~~L~~---~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~ 591 (770)
--+.-++++++.++. .++..+||+|||+|..+..++... +..+|+++|.|+.++..|.++.....
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~----------- 196 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-PQCTVTAIDVSKAAIKLAKENAQRLK----------- 196 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-CCceEEEEeccHHHHHHHHHHHHHHh-----------
Confidence 334455566666544 345679999999999999998877 47999999999999999999875432
Q ss_pred CCccEEEEE----CCccc-cCCCCCCccEEEec
Q 004178 592 DVKSAVLFD----GSITV-FDSRLHGFDIGTCL 619 (770)
Q Consensus 592 ~~~~Vef~~----GDaed-lp~~d~sFDlVVc~ 619 (770)
...++...+ +|..+ .+..++.+|+++|+
T Consensus 197 l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 197 LSGRIEVIHNIMESDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred hcCceEEEecccccccccccccccCceeEEecC
Confidence 123455553 33322 22345889999985
No 205
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.54 E-value=0.00032 Score=74.48 Aligned_cols=99 Identities=13% Similarity=0.250 Sum_probs=71.5
Q ss_pred HHHHHhhcC-CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 522 YALQHIKES-CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 522 ~Il~~L~~~-~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
.+++.+... ....|.|+|||++.++. ... ..|..+|+-. .+-++..
T Consensus 170 ~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~---~kV~SfDL~a---------------------------~~~~V~~ 216 (325)
T KOG3045|consen 170 VIIRKIKRRPKNIVIADFGCGEAKIAS---SER---HKVHSFDLVA---------------------------VNERVIA 216 (325)
T ss_pred HHHHHHHhCcCceEEEecccchhhhhh---ccc---cceeeeeeec---------------------------CCCceee
Confidence 345555443 45689999999999885 222 6899999531 1334567
Q ss_pred CCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchh
Q 004178 601 GSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 656 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN 656 (770)
+|+.+.|.++.+.|++|++..+.-- .+..|++++.|+|+|| .+.|......|.
T Consensus 217 cDm~~vPl~d~svDvaV~CLSLMgt---n~~df~kEa~RiLk~gG~l~IAEv~SRf~ 270 (325)
T KOG3045|consen 217 CDMRNVPLEDESVDVAVFCLSLMGT---NLADFIKEANRILKPGGLLYIAEVKSRFS 270 (325)
T ss_pred ccccCCcCccCcccEEEeeHhhhcc---cHHHHHHHHHHHhccCceEEEEehhhhcc
Confidence 8999999999999999987776433 3556777899999998 777766554443
No 206
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00012 Score=78.50 Aligned_cols=96 Identities=23% Similarity=0.358 Sum_probs=76.6
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
.+..++|+|||.|.++. ..|...++|.|++...+..|++ .+. .....+|+..+|+++
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----------------~~~--~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----------------SGG--DNVCRADALKLPFRE 101 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----------------CCC--ceeehhhhhcCCCCC
Confidence 36789999999999874 1245789999999999988865 111 167789999999999
Q ss_pred CCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEE
Q 004178 611 HGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIIS 649 (770)
.+||.++++.++||+.. ......++++.++++|| ...|.
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999999999974 34466777899999998 44443
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.51 E-value=0.00067 Score=71.65 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC-C
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp-~ 608 (770)
.++++||=||-|.|..+..++++. +..+|+.||+++..++.|++.+...... ...++++++.+|+...- .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~l~~ 145 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKFLKE 145 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHHHHT
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHHHHh
Confidence 368999999999999999999886 5689999999999999999866432211 13468999999976532 2
Q ss_pred CCC-CccEEEeccccccCChhH--HHHHHHHHHHcccCC-EEEEE
Q 004178 609 RLH-GFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIVS 649 (770)
Q Consensus 609 ~d~-sFDlVVc~eVLEHL~~d~--~~~fleeI~rvLKPG-~LIIS 649 (770)
... .||+|+.-..-...+... ...|.+.+.+.|+|| ++++.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 234 899998733221111111 135666799999998 44443
No 208
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.49 E-value=0.0035 Score=67.41 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=101.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh--h-------------------hcccccCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK--L-------------------SKKLDAAV 588 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~--~-------------------s~~~~~l~ 588 (770)
....+||--|||-|+++..++..+ ..+.|.|.|--|+-..+-.++.. . ++......
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 346799999999999999999997 89999999999875544322210 0 00000001
Q ss_pred C----C---CCCccEEEEECCccccCCCC---CCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHH
Q 004178 589 P----C---TDVKSAVLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAI 658 (770)
Q Consensus 589 p----r---~~~~~Vef~~GDaedlp~~d---~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~l 658 (770)
| . ....++....||..+..... +.||+|+....|.-.. ..-.+++.|.++||||.+.|-. -++
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~-----GPL 204 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINF-----GPL 204 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEec-----CCc
Confidence 1 0 12346788888888766554 7899999987776544 3445666899999999655521 122
Q ss_pred HhhhccccCCCCCchhhhhccccc-cCCCcccccCHHHHHHHHHHHHHHCCcEEEEEee
Q 004178 659 LQKSSSTIQEDDPDEKTQLQSCKF-RNHDHKFEWTRDQFNCWATELAARHNYSVEFSGV 716 (770)
Q Consensus 659 f~~~~~~g~~e~pde~~~~~~~~f-Rh~DHkfewTreEF~~Wa~~La~r~GY~VEF~Gv 716 (770)
.... ... ...+-..+++.+|+. .++.+.||.++....
T Consensus 205 lyh~-----------------~~~~~~~~~sveLs~eEi~----~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 205 LYHF-----------------EPMSIPNEMSVELSLEEIK----ELIEKLGFEIEKEES 242 (270)
T ss_pred cccC-----------------CCCCCCCCcccCCCHHHHH----HHHHHCCCEEEEEEE
Confidence 2211 001 111233789999999 677889999966444
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.47 E-value=0.0017 Score=73.06 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc----
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF---- 606 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl---- 606 (770)
++++|||+=|=||.++.+.+..+. .+|++||+|..+|+.|++++. +++. ...++.|+++|+-+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~--LNg~--------~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAE--LNGL--------DGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHH--hcCC--------CccceeeehhhHHHHHHHH
Confidence 489999999999999999888772 599999999999999999874 2211 234689999997653
Q ss_pred CCCCCCccEEEec--------cccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 607 DSRLHGFDIGTCL--------EVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 607 p~~d~sFDlVVc~--------eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
......||+|+.- ....-.. .....+...+.++|+|| .++++|..
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~-rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQ-RDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHH-HHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 2234589999872 1111112 23345566789999999 55555543
No 210
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0011 Score=70.82 Aligned_cols=164 Identities=12% Similarity=0.051 Sum_probs=116.0
Q ss_pred CCchhhhhhccCCccchhhcccccccccceeeeecccCCChhhhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCc
Q 004178 462 LPPQELILAAADDSARTFSLLSSRACCLEYHITLLRVTEPPEDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCG 541 (770)
Q Consensus 462 l~p~elflaa~~~~~~diS~Ls~~~~~Ley~i~lL~v~ep~eeR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCG 541 (770)
++..++|-.-.|..... + ...++.+|+++....-. .-++-..-+|...+.+|+.+++..++.+|++-|.|
T Consensus 46 ~~h~~iIGK~~G~~v~s-s--------kG~~vylL~PTpELWTl-~LphRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTG 115 (314)
T KOG2915|consen 46 LPHSDIIGKPYGSKVAS-S--------KGKFVYLLQPTPELWTL-ALPHRTQILYTPDIAMILSMLEIRPGSVVLESGTG 115 (314)
T ss_pred cchhheecCCccceeee-c--------CCcEEEEecCChHHhhh-hccCcceEEecccHHHHHHHhcCCCCCEEEecCCC
Confidence 66666676666666422 2 55577788776644211 11122335677778889999999999999999999
Q ss_pred cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--CCCccEEEec
Q 004178 542 SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCL 619 (770)
Q Consensus 542 tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d~sFDlVVc~ 619 (770)
+|.+..++++..+|.++++.+|+.+.-.+.|.+.++.. +-..++++.+-|+...-+. ...+|+|+.
T Consensus 116 SGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----------gi~~~vt~~hrDVc~~GF~~ks~~aDaVFL- 183 (314)
T KOG2915|consen 116 SGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----------GIGDNVTVTHRDVCGSGFLIKSLKADAVFL- 183 (314)
T ss_pred cchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----------CCCcceEEEEeecccCCccccccccceEEE-
Confidence 99999999999888999999999988888888766431 3456899999998875553 467888843
Q ss_pred cccccCChhHHHHHHHHHHHcccCC--EEEEEecCC
Q 004178 620 EVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNY 653 (770)
Q Consensus 620 eVLEHL~~d~~~~fleeI~rvLKPG--~LIISTPN~ 653 (770)
-++ .++.++. .++.+||.+ +++-.+|.-
T Consensus 184 ----DlP-aPw~AiP-ha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 184 ----DLP-APWEAIP-HAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ----cCC-Chhhhhh-hhHHHhhhcCceEEeccHHH
Confidence 233 4555555 466788875 555566653
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.39 E-value=0.00074 Score=72.27 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=66.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+.|++.....+++.|||+|-|+|.++..|++.+ .+|+++++++.|+....++... .......++++
T Consensus 48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g-----------tp~~~kLqV~~ 113 (315)
T KOG0820|consen 48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG-----------TPKSGKLQVLH 113 (315)
T ss_pred HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC-----------CCccceeeEEe
Confidence 345555566788999999999999999999998 8999999999999999887631 11225789999
Q ss_pred CCccccCCCCCCccEEEec
Q 004178 601 GSITVFDSRLHGFDIGTCL 619 (770)
Q Consensus 601 GDaedlp~~d~sFDlVVc~ 619 (770)
||....+. -.||.+|++
T Consensus 114 gD~lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 114 GDFLKTDL--PRFDGCVSN 130 (315)
T ss_pred cccccCCC--cccceeecc
Confidence 99877664 378998873
No 212
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.37 E-value=0.00038 Score=77.62 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++.+++|+|||-|....+++.... ..++|+|.++.-+.++........ ....-.+..+|+...+++
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~-----------l~~k~~~~~~~~~~~~fe 175 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAY-----------LDNKCNFVVADFGKMPFE 175 (364)
T ss_pred cccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHH-----------hhhhcceehhhhhcCCCC
Confidence 3456899999999999999988763 889999999988887765432211 112234478899999999
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII 648 (770)
++.||.+-++++..|.+ +.. .+.++++++++||.+++
T Consensus 176 dn~fd~v~~ld~~~~~~-~~~-~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 176 DNTFDGVRFLEVVCHAP-DLE-KVYAEIYRVLKPGGLFI 212 (364)
T ss_pred ccccCcEEEEeecccCC-cHH-HHHHHHhcccCCCceEE
Confidence 99999999999999999 444 44457999999994443
No 213
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.33 E-value=0.0012 Score=70.87 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=77.4
Q ss_pred cCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCC------CCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 004178 510 LFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYP------TALEKIVGVDISQKSLSRAAKIIHSKLSKK 583 (770)
Q Consensus 510 ~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~g------gp~~~VvGVDISeemLe~ArkrL~~~~s~~ 583 (770)
.|+.|..-. +++.+.+....+.+|+|..||+|.++..+.+.. ....+++|+|+++.++..|+-++.-..
T Consensus 27 ~~~TP~~i~--~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--- 101 (311)
T PF02384_consen 27 QFYTPREIV--DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--- 101 (311)
T ss_dssp GC---HHHH--HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---
T ss_pred eeehHHHHH--HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---
Confidence 344454443 366677777778899999999999998777621 123789999999999999976652110
Q ss_pred cccCCCCCCCccEEEEECCccccCCC--CCCccEEEecc---cccc----CC------------hhHHHHHHHHHHHccc
Q 004178 584 LDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLE---VIEH----ME------------EDEASQFGNIVLSSFR 642 (770)
Q Consensus 584 ~~~l~pr~~~~~Vef~~GDaedlp~~--d~sFDlVVc~e---VLEH----L~------------~d~~~~fleeI~rvLK 642 (770)
.......+..+|....+.. ...||+|++.= ..++ .. ....-.|+..+.+.|+
T Consensus 102 -------~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 174 (311)
T PF02384_consen 102 -------IDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK 174 (311)
T ss_dssp -------HHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE
T ss_pred -------cccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc
Confidence 0122345778886544332 47899999942 1101 00 0112246677999999
Q ss_pred CC-EEEEEecC
Q 004178 643 PR-ILIVSTPN 652 (770)
Q Consensus 643 PG-~LIISTPN 652 (770)
+| .+.+.+|+
T Consensus 175 ~~G~~~~Ilp~ 185 (311)
T PF02384_consen 175 PGGRAAIILPN 185 (311)
T ss_dssp EEEEEEEEEEH
T ss_pred cccceeEEecc
Confidence 97 66666665
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.30 E-value=0.00044 Score=70.54 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=77.4
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 519 R~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
|+..+.+.+.....+.+.|+|.|+|.++...++.. .+|++++.++.-.+.|.++++ -.+..+++.
T Consensus 20 RlavF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~------------v~g~~n~ev 84 (252)
T COG4076 20 RLAVFTSAIAEVAEDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLH------------VPGDVNWEV 84 (252)
T ss_pred HHHHHHHHHHHHhhhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCC------------CCCCcceEE
Confidence 33344444444445899999999999998777765 899999999999999999874 246679999
Q ss_pred EECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 599 FDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 599 ~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
+.||+.+.++ ...|+|+|-..=-.+-+++....++.+...||-.
T Consensus 85 v~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d 128 (252)
T COG4076 85 VVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYD 128 (252)
T ss_pred Eecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcC
Confidence 9999999887 5789998843211121223233334466677765
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0023 Score=71.56 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=93.2
Q ss_pred hhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCC-------------------------------
Q 004178 508 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTAL------------------------------- 556 (770)
Q Consensus 508 ~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~------------------------------- 556 (770)
......||.+.....++...+..++..++|-=||+|.+++..|..+...
T Consensus 168 ~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 3444558888777788877777777899999999999998877654110
Q ss_pred c-------eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEecccc-ccCChh
Q 004178 557 E-------KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVI-EHMEED 628 (770)
Q Consensus 557 ~-------~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVL-EHL~~d 628 (770)
. .++|+|+++.+++.|+.+... .+....|+|.++|+..+......+|+|||+=-- +-+..+
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~-----------AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARA-----------AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHh-----------cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 378999999999999988753 234457999999999988766889999996211 112111
Q ss_pred -----HHHHHHHHHHHcccCC-EEEEEecC
Q 004178 629 -----EASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 629 -----~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
--..|.+.+.+.++-. ..+++++.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 1234555565666654 55555543
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.27 E-value=0.0011 Score=70.19 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+.-.+.+++.+...++..|||+|.|.|.++..|++.+ .+|+++|+++.+++..++++. ..+++
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--------------~~~~~ 78 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--------------SNPNV 78 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--------------TCSSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--------------hcccc
Confidence 3445567777777789999999999999999999987 899999999999998887552 34689
Q ss_pred EEEECCccccCCCC---CCccEEEeccccccCChhHHHHHHHHHHHcccCC--EEEEEecC
Q 004178 597 VLFDGSITVFDSRL---HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPN 652 (770)
Q Consensus 597 ef~~GDaedlp~~d---~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG--~LIISTPN 652 (770)
+++.+|+..++... .....|+++--. ++. ..++..+...-+.| .+++..+.
T Consensus 79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~g~~~~~l~vq~ 134 (262)
T PF00398_consen 79 EVINGDFLKWDLYDLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRFGRVRMVLMVQK 134 (262)
T ss_dssp EEEES-TTTSCGGGHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGGCEEEEEEEEEH
T ss_pred eeeecchhccccHHhhcCCceEEEEEecc-cch----HHHHHHHhhcccccccceEEEEeh
Confidence 99999998877653 344455554222 333 23333455544556 34444433
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0017 Score=71.91 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=90.4
Q ss_pred hhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC
Q 004178 508 QALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA 587 (770)
Q Consensus 508 ~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l 587 (770)
...|+|.+...|...+... .. +.+|||.=+|-|.++..+|+.+. ..|+++|+++.+++..++++.- +
T Consensus 168 Kv~Fsprl~~ER~Rva~~v-~~--GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~L--N------ 234 (341)
T COG2520 168 KVYFSPRLSTERARVAELV-KE--GETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRL--N------ 234 (341)
T ss_pred HeEECCCchHHHHHHHhhh-cC--CCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHh--c------
Confidence 4678899999888866433 33 89999999999999999999883 3399999999999999998742 1
Q ss_pred CCCCCCccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 588 VPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 588 ~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
.....++.++||+.+.....+.+|-|++...- ....|.....+.+++| .+..
T Consensus 235 ---~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~------~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 235 ---KVEGRVEPILGDAREVAPELGVADRIIMGLPK------SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred ---CccceeeEEeccHHHhhhccccCCEEEeCCCC------cchhhHHHHHHHhhcCcEEEE
Confidence 12234899999999988877899999876543 1123444577788888 4443
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.24 E-value=0.0033 Score=65.92 Aligned_cols=116 Identities=12% Similarity=0.156 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+...+++...++..+++++||||.=+|+-+..+|...++.++|+++|++++..+.+.+..+. .+....|
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-----------agv~~KI 127 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-----------AGVDHKI 127 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-----------cccccee
Confidence 44455666667777899999999888888887887776779999999999999999664432 2344579
Q ss_pred EEEECCcccc-C-----CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE
Q 004178 597 VLFDGSITVF-D-----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 597 ef~~GDaedl-p-----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII 648 (770)
++.+|++.+. + .+.+.||.+ .+.|..+... .+.+.+.+++|+|.+++
T Consensus 128 ~~i~g~a~esLd~l~~~~~~~tfDfa----FvDadK~nY~-~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 128 TFIEGPALESLDELLADGESGTFDFA----FVDADKDNYS-NYYERLLRLLRVGGVIV 180 (237)
T ss_pred eeeecchhhhHHHHHhcCCCCceeEE----EEccchHHHH-HHHHHHHhhcccccEEE
Confidence 9999986542 1 135789999 4566665555 45556999999994444
No 219
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.22 E-value=0.0018 Score=69.36 Aligned_cols=114 Identities=12% Similarity=0.160 Sum_probs=71.3
Q ss_pred CCCEEEEEcCc--cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 531 CATTLVDFGCG--SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 531 ~~~rVLDIGCG--tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
.-...|||||| +-.....+++...|..+|+-+|+++-.+..++..+.. .......++++|+.+...
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~------------~~~g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD------------NPRGRTAYVQADLRDPEA 135 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-------------TTSEEEEEE--TT-HHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC------------CCCccEEEEeCCCCCHHH
Confidence 66789999999 3445666776655779999999999999999887631 111248999999876432
Q ss_pred C------CCCcc-----EEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEEecCCchh
Q 004178 609 R------LHGFD-----IGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTPNYEYN 656 (770)
Q Consensus 609 ~------d~sFD-----lVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIISTPN~efN 656 (770)
- .+-+| .|+...++||+++ ++...+...+...|.|| +++|+....+..
T Consensus 136 iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~ 196 (267)
T PF04672_consen 136 ILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA 196 (267)
T ss_dssp HHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred HhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence 0 12233 6888999999986 55667777899999999 888887766544
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.22 E-value=0.0028 Score=71.09 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=73.2
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC-CC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LH 611 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~-d~ 611 (770)
.+|||+.||+|..+..++...+...+|+++|+++.+++.+++++.. ....++++.++|+..+-.. ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~------------N~~~~~~v~~~Da~~~l~~~~~ 113 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY------------NSVENIEVPNEDAANVLRYRNR 113 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEchhHHHHHHHhCC
Confidence 5899999999999999988742347899999999999999998742 2334688999998765332 35
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.||+|..-= + ..+ ..|...+.+.+++| ++.++.
T Consensus 114 ~fDvIdlDP-f-Gs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 114 KFHVIDIDP-F-GTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCEEEeCC-C-CCc----HHHHHHHHHhcccCCEEEEEe
Confidence 799996633 2 222 24555677788887 777763
No 221
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0019 Score=65.77 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=60.0
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 527 IKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 527 L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
+....+.-++|||||+|..+..|++..++.....++||++.+++...+.+. .+.-++..++.|+...
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~-------------~n~~~~~~V~tdl~~~ 105 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR-------------CNRVHIDVVRTDLLSG 105 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH-------------hcCCccceeehhHHhh
Confidence 344457889999999999999999877677899999999999998877553 1223577778786653
Q ss_pred CCCCCCccEEEec
Q 004178 607 DSRLHGFDIGTCL 619 (770)
Q Consensus 607 p~~d~sFDlVVc~ 619 (770)
-.. ++.|+++.+
T Consensus 106 l~~-~~VDvLvfN 117 (209)
T KOG3191|consen 106 LRN-ESVDVLVFN 117 (209)
T ss_pred hcc-CCccEEEEC
Confidence 333 788887764
No 222
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.18 E-value=0.0015 Score=66.44 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=67.2
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCc
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGF 613 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sF 613 (770)
+++|||+|.|.-+..|+=.. |..+++.+|....-+..-+.-... -+..|++++++.+++ ......|
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~------------L~L~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRE------------LGLSNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHH------------HT-SSEEEEES-HHH-TTTTT-E
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHH------------hCCCCEEEEEeeecc-cccCCCc
Confidence 89999999999998887665 568999999998655544432221 145689999999998 4456899
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHcccCCE
Q 004178 614 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRI 645 (770)
Q Consensus 614 DlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~ 645 (770)
|+|++..+- +...+.+.+...+++|.
T Consensus 117 d~v~aRAv~------~l~~l~~~~~~~l~~~G 142 (184)
T PF02527_consen 117 DVVTARAVA------PLDKLLELARPLLKPGG 142 (184)
T ss_dssp EEEEEESSS------SHHHHHHHHGGGEEEEE
T ss_pred cEEEeehhc------CHHHHHHHHHHhcCCCC
Confidence 999998775 33466677888999983
No 223
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.18 E-value=0.00012 Score=75.51 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=64.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
.+.++||+|.|.|..+..++... .+|++.+.|..|..+.+++- -+| ..+-+....+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~-----------------ynV----l~~~ew~~t~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKN-----------------YNV----LTEIEWLQTD 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcC-----------------Cce----eeehhhhhcC
Confidence 46899999999999999998877 88999999999998876521 011 0111111223
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccC
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRP 643 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKP 643 (770)
-+||+|.|..++..-. ++. .+++.+..+|+|
T Consensus 168 ~k~dli~clNlLDRc~-~p~-kLL~Di~~vl~p 198 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCF-DPF-KLLEDIHLVLAP 198 (288)
T ss_pred ceeehHHHHHHHHhhc-ChH-HHHHHHHHHhcc
Confidence 5799999999997665 444 445569999999
No 224
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.18 E-value=0.00019 Score=71.15 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=73.7
Q ss_pred EEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHH-hhhccccCCCCCch
Q 004178 596 AVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAIL-QKSSSTIQEDDPDE 673 (770)
Q Consensus 596 Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf-~~~~~~g~~e~pde 673 (770)
+.+.+-.....+|.+++.|+|.|-+|+||+..++...++++++++|||| .+-++.|...|.... +.....+.
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvgg------ 104 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGG------ 104 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccC------
Confidence 3333333345677889999999999999999888889999999999998 999999998775432 22111111
Q ss_pred hhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEE
Q 004178 674 KTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVE 712 (770)
Q Consensus 674 ~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VE 712 (770)
..+-.||+|++..|.+.+. +...++|+.|.
T Consensus 105 -----pgpndhP~~r~v~t~r~m~----n~~m~~~~~~k 134 (185)
T COG4627 105 -----PGPNDHPLHRIVKTMRMMF----NGFMDAGFVVK 134 (185)
T ss_pred -----CCCCCCcHHHHHHHHHHHH----HHHHhhhheeh
Confidence 2344578888877777766 55666777764
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.13 E-value=0.0038 Score=69.15 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.++.++||+||++|.++..|++.+ .+|+|||..+ | +. .+ ...++|+.+.+|.....+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l---~~-~L--------------~~~~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-M---AQ-SL--------------MDTGQVEHLRADGFKFRPP 267 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-c---CH-hh--------------hCCCCEEEEeccCcccCCC
Confidence 468899999999999999999998 7999999554 1 11 12 1235899999987665544
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
.+.+|.++|-.+- .+ ....+-+..+|..|
T Consensus 268 ~~~vDwvVcDmve-----~P-~rva~lm~~Wl~~g 296 (357)
T PRK11760 268 RKNVDWLVCDMVE-----KP-ARVAELMAQWLVNG 296 (357)
T ss_pred CCCCCEEEEeccc-----CH-HHHHHHHHHHHhcC
Confidence 6789999987663 12 23344577788777
No 226
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0033 Score=65.08 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
.++.+|+|+|+..|.++..+++..+...+|+|+|+.| -...++|.++++|+++-+.
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-----------------------~~~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-----------------------MKPIPGVIFLQGDITDEDTL 100 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-----------------------cccCCCceEEeeeccCccHH
Confidence 3578999999999999999998876556799999865 1233569999999886543
Q ss_pred -------CCCCccEEEeccc--------cccCChhHH-HHHHHHHHHcccCC--EEEEEecCCchhHHHhh
Q 004178 609 -------RLHGFDIGTCLEV--------IEHMEEDEA-SQFGNIVLSSFRPR--ILIVSTPNYEYNAILQK 661 (770)
Q Consensus 609 -------~d~sFDlVVc~eV--------LEHL~~d~~-~~fleeI~rvLKPG--~LIISTPN~efN~lf~~ 661 (770)
....+|+|++-.. ++|...-.+ ...++.+..+|+|| .++=..-..+++.++..
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~ 171 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKA 171 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHH
Confidence 1234799997432 344432222 23334456799998 44445556666666554
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.07 E-value=0.0049 Score=66.52 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCEEEEEcCccchHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 531 CATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.+.+|+=||||.=-++ ..|++..+....|+++|+++++++.|++.+.... +...++.|..+|+.+.+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------~L~~~m~f~~~d~~~~~~d 189 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------GLSKRMSFITADVLDVTYD 189 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH-------------HH-SSEEEEES-GGGG-GG
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc----------cccCCeEEEecchhccccc
Confidence 3569999999976654 4455443344789999999999999988664211 1234799999999887766
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
...||+|+......--. ++...+++++.+.++|| .+++-..
T Consensus 190 l~~~DvV~lAalVg~~~-e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 190 LKEYDVVFLAALVGMDA-EPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp ----SEEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred cccCCEEEEhhhccccc-chHHHHHHHHHhhCCCCcEEEEecc
Confidence 78999998877765333 45667777899999999 6666543
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.03 E-value=0.0076 Score=65.38 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=71.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
++++|||+=|=+|.++...+..+ ..+|++||.|..+++.|++++.- +++ ...+++|+++|+.+.-.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~l--Ng~--------~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAAL--NGL--------DLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHH--TT---------CCTCEEEEES-HHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHH--cCC--------CccceEEEecCHHHHHHHH
Confidence 47899999999999999877765 25899999999999999998742 111 23579999999865211
Q ss_pred -CCCCccEEEec---ccc--ccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 609 -RLHGFDIGTCL---EVI--EHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 609 -~d~sFDlVVc~---eVL--EHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
..+.||+||+- ..= ..+. .....+...+.++|+|| .+++++
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~-~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLE-RDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHH-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCCCCCEEEECCCCCCCCHHHHH-HHHHHHHHHHHHhcCCCCEEEEEc
Confidence 24689999982 110 1112 23345556789999999 444443
No 229
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.01 E-value=0.0045 Score=71.90 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=38.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHh
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~gg-------p~~~VvGVDISeemLe~ArkrL~ 577 (770)
...+|||.|||+|.++..+++... -...++|+|+++.++..|+.++.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 456999999999999988875431 12578999999999999998774
No 230
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.95 E-value=0.0015 Score=68.83 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=96.9
Q ss_pred cceeeeecccCC--Ch----hhhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEE
Q 004178 489 LEYHITLLRVTE--PP----EDRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGV 562 (770)
Q Consensus 489 Ley~i~lL~v~e--p~----eeR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGV 562 (770)
-+.+.++.+... |. .-+|-......|+...+.+. +.++...+.+|||...|-|+.+...++++. .+|+.+
T Consensus 88 ~~~~yKLvPt~~G~PTiEIdGIrMhrt~~tdP~~Dt~~Kv--~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~Vitv 163 (287)
T COG2521 88 AEHYYKLVPTPPGAPTIEIDGIRMHRTKGTDPLEDTLAKV--ELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITV 163 (287)
T ss_pred cCccEEEecCCCCCCeEEEccEEEecccCcCcHHHHHhhh--heeccccCCEeeeeccCccHHHHHHHHcCC--cEEEEE
Confidence 445566664333 22 13344444555777655542 445666799999999999999999999882 499999
Q ss_pred eCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc--CCCCCCccEEEec----cccccCChhHHHHHHHH
Q 004178 563 DISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF--DSRLHGFDIGTCL----EVIEHMEEDEASQFGNI 636 (770)
Q Consensus 563 DISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl--p~~d~sFDlVVc~----eVLEHL~~d~~~~flee 636 (770)
+.++..|+.|+ ++++... -....++++.||+.+. ++.+.+||+|+-- ..-.++. ...|-++
T Consensus 164 Ekdp~VLeLa~--lNPwSr~--------l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLY---seefY~E 230 (287)
T COG2521 164 EKDPNVLELAK--LNPWSRE--------LFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELY---SEEFYRE 230 (287)
T ss_pred eeCCCeEEeec--cCCCCcc--------ccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHh---HHHHHHH
Confidence 99999999984 3333211 1122689999998774 4567899998641 0001222 3467778
Q ss_pred HHHcccCC-EEEEEecC
Q 004178 637 VLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 637 I~rvLKPG-~LIISTPN 652 (770)
++|+|||| .++=.+-|
T Consensus 231 l~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 231 LYRILKRGGRLFHYVGN 247 (287)
T ss_pred HHHHcCcCCcEEEEeCC
Confidence 99999998 66544433
No 231
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.004 Score=71.61 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
+..+.-+..+-+.+....++.+||+-||+|.+...+++.. .+|+||++++++++-|+++.. .++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~------------~Ngi 430 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQ------------INGI 430 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcch------------hcCc
Confidence 4556677788888888888999999999999999999987 899999999999999988653 4678
Q ss_pred ccEEEEECCcccc
Q 004178 594 KSAVLFDGSITVF 606 (770)
Q Consensus 594 ~~Vef~~GDaedl 606 (770)
.|.+|++|-++++
T Consensus 431 sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 431 SNATFIVGQAEDL 443 (534)
T ss_pred cceeeeecchhhc
Confidence 8999999966654
No 232
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.87 E-value=0.0057 Score=62.05 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=74.1
Q ss_pred HHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 522 YALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 522 ~Il~~L~~--~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
.+.+.+.. ..+.++||+-||+|.++...+.++. .+|+.||.++..++..+++++... ...++..+
T Consensus 31 alFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~-----------~~~~~~v~ 97 (183)
T PF03602_consen 31 ALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLG-----------LEDKIRVI 97 (183)
T ss_dssp HHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEE
T ss_pred HHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhC-----------CCcceeee
Confidence 44444443 4689999999999999998887773 799999999999999999886432 22368889
Q ss_pred ECCccccC----CCCCCccEEEeccccccCChhHHHHHHHHHH--HcccCC-EEEEEecCC
Q 004178 600 DGSITVFD----SRLHGFDIGTCLEVIEHMEEDEASQFGNIVL--SSFRPR-ILIVSTPNY 653 (770)
Q Consensus 600 ~GDaedlp----~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~--rvLKPG-~LIISTPN~ 653 (770)
.+|+...- .....||+|++-=-... . .....+++.+. .+|+++ .+++.+...
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPPY~~-~-~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPPYAK-G-LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--STTS-C-HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCHHHHHHhhcccCCCceEEEECCCccc-c-hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 98854321 13578999966311111 1 11133344444 788888 666766553
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.87 E-value=0.0016 Score=64.72 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=31.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChH
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK 567 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISee 567 (770)
++.+|||+||++|.++..++++.++..+|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4589999999999999999998755689999999875
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.85 E-value=0.0025 Score=60.29 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=37.9
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
++||+|||.|.++..+++.+ +..+|+++|+++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHH
Confidence 48999999999999998876 44689999999999999988764
No 235
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.67 E-value=0.0055 Score=63.10 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
-.+++|||+|.|+|..++.-++.+. ..|+..|+.+..++..+-+.. .+.-.+.+...|+.- .
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~-------------angv~i~~~~~d~~g---~ 139 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAA-------------ANGVSILFTHADLIG---S 139 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchh-------------hccceeEEeeccccC---C
Confidence 4689999999999999998888774 789999999887776654432 122467777777654 3
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchh
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYN 656 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN 656 (770)
+..||+|+...++..= .....++....++...| .++|.+|.+.+-
T Consensus 140 ~~~~Dl~LagDlfy~~--~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 140 PPAFDLLLAGDLFYNH--TEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred CcceeEEEeeceecCc--hHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 4689999999987432 24445565344455557 888999987653
No 236
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.008 Score=62.74 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHH---HHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS---LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeem---Le~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
+++++|||.|.|.-+..||=.. |..+|+-+|....- |+.+.+.+ +..|++++++.++++..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL---------------~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKEL---------------GLENVEIVHGRAEEFGQ 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHh---------------CCCCeEEehhhHhhccc
Confidence 6899999999999999988444 45679999988754 44444433 55689999999999876
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
....||+|++..+- .+..+.+-+..++|+|
T Consensus 132 ~~~~~D~vtsRAva------~L~~l~e~~~pllk~~ 161 (215)
T COG0357 132 EKKQYDVVTSRAVA------SLNVLLELCLPLLKVG 161 (215)
T ss_pred ccccCcEEEeehcc------chHHHHHHHHHhcccC
Confidence 42229999987764 3345556677888886
No 237
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.56 E-value=0.0077 Score=62.85 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=62.8
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC---C
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS---R 609 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~---~ 609 (770)
.++|||||=+......-.. ...|+.||+.+. .-.+.+.|..+.|. +
T Consensus 53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~---------------------------~~~I~qqDFm~rplp~~~ 101 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ---------------------------HPGILQQDFMERPLPKNE 101 (219)
T ss_pred ceEEeecccCCCCcccccC----ceeeEEeecCCC---------------------------CCCceeeccccCCCCCCc
Confidence 6999999886665543222 256999998751 11233445544443 3
Q ss_pred CCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-E-----EEEEecC
Q 004178 610 LHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-I-----LIVSTPN 652 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~-----LIISTPN 652 (770)
.+.||+|+|+.||.++|+ ...-.+.+.+.++|+|+ . +++.+|-
T Consensus 102 ~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 102 SEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred ccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 578999999999999994 44566777899999997 7 8888876
No 238
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.033 Score=62.05 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=85.9
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC-CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA-LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp-~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
+....+.+.++.+|||+..+.|.=+..+++.... ...|+++|+++.-++..++++.+ -+..++....
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R------------lG~~nv~~~~ 214 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR------------LGVRNVIVVN 214 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH------------cCCCceEEEe
Confidence 3445677888999999999999988888876522 25579999999999999888863 3566788888
Q ss_pred CCccccCCC---CCCccEEEe------ccccccCC-------h-------hHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 601 GSITVFDSR---LHGFDIGTC------LEVIEHME-------E-------DEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 601 GDaedlp~~---d~sFDlVVc------~eVLEHL~-------~-------d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
.|...++.. ...||.|+. .++++-=+ . .....+++...++|||| .++-+|...
T Consensus 215 ~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 215 KDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 887654432 225999986 45553222 1 12345666789999999 777777653
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.54 E-value=0.02 Score=59.27 Aligned_cols=102 Identities=17% Similarity=0.074 Sum_probs=65.4
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc-cCCCCCCc
Q 004178 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDSRLHGF 613 (770)
Q Consensus 535 VLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed-lp~~d~sF 613 (770)
|.||||--|++..+|++.+ ...+++++|+++..++.|++++... +...++++..+|..+ ++. ....
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~-----------~l~~~i~~rlgdGL~~l~~-~e~~ 67 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKY-----------GLEDRIEVRLGDGLEVLKP-GEDV 67 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHT-----------T-TTTEEEEE-SGGGG--G-GG--
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCcccEEEEECCcccccCC-CCCC
Confidence 6899999999999999987 5578999999999999999988642 234579999999544 433 2347
Q ss_pred cEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCC
Q 004178 614 DIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 653 (770)
Q Consensus 614 DlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~ 653 (770)
|.|+..++=. .....+++.....++...-+|--|+.
T Consensus 68 d~ivIAGMGG----~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 68 DTIVIAGMGG----ELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp -EEEEEEE-H----HHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred CEEEEecCCH----HHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 8887766532 22334444454555544334445554
No 240
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.34 E-value=0.0096 Score=63.36 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=71.3
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL 610 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d 610 (770)
.+.+|+|||||-=-++....... +...++|+||+..+++...+.+.. ...+.+....|+..-+. .
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~-------------l~~~~~~~v~Dl~~~~~-~ 169 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAV-------------LGVPHDARVRDLLSDPP-K 169 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHH-------------TT-CEEEEEE-TTTSHT-T
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHh-------------hCCCcceeEeeeeccCC-C
Confidence 37899999999998888776654 457999999999999988775532 12356666667665433 3
Q ss_pred CCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCc
Q 004178 611 HGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 654 (770)
Q Consensus 611 ~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~e 654 (770)
...|+.+..=+++-+.......-. .+...++-..++|+.|-..
T Consensus 170 ~~~DlaLllK~lp~le~q~~g~g~-~ll~~~~~~~~vVSfPtrS 212 (251)
T PF07091_consen 170 EPADLALLLKTLPCLERQRRGAGL-ELLDALRSPHVVVSFPTRS 212 (251)
T ss_dssp SEESEEEEET-HHHHHHHSTTHHH-HHHHHSCESEEEEEEES--
T ss_pred CCcchhhHHHHHHHHHHHhcchHH-HHHHHhCCCeEEEeccccc
Confidence 679999999888777633322223 3555666568899998854
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.30 E-value=0.018 Score=62.15 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=86.2
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
.+...+.+.++.+|||+.+|.|.-+..+++.......|++.|+++.-+...++++.+ .+..++.....
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r------------~g~~~v~~~~~ 143 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR------------LGVFNVIVINA 143 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH------------TT-SSEEEEES
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh------------cCCceEEEEee
Confidence 344556777889999999999998888887664468999999999999998887753 35667888888
Q ss_pred CccccCC--CCCCccEEEe------ccccccCCh--------------hHHHHHHHHHHHcc----cCC-EEEEEecC
Q 004178 602 SITVFDS--RLHGFDIGTC------LEVIEHMEE--------------DEASQFGNIVLSSF----RPR-ILIVSTPN 652 (770)
Q Consensus 602 Daedlp~--~d~sFDlVVc------~eVLEHL~~--------------d~~~~fleeI~rvL----KPG-~LIISTPN 652 (770)
|...... ....||.|+. .+++.+-++ .....+++.+.+.+ ||| .++-+|..
T Consensus 144 D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 144 DARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp HHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred ccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 8776532 2346999986 344544331 11245667789999 998 66666654
No 242
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.27 E-value=0.011 Score=64.84 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 519 RVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 519 R~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
.++.+++.+...++..++|.=||.|..+..+++..++ .+|+|+|.++.+++.|++++... ..++++
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~-------------~~R~~~ 73 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF-------------EGRVVL 73 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc-------------CCcEEE
Confidence 3456667777777889999999999999999987633 89999999999999999887421 247888
Q ss_pred EECCccccCC-----CCCCccEEEe
Q 004178 599 FDGSITVFDS-----RLHGFDIGTC 618 (770)
Q Consensus 599 ~~GDaedlp~-----~d~sFDlVVc 618 (770)
++++..++.. ...++|.|+.
T Consensus 74 i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 74 IHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred EeCCHHHHHHHHHhcCCCcccEEEE
Confidence 9988766432 2246888776
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.20 E-value=0.027 Score=58.99 Aligned_cols=118 Identities=11% Similarity=0.040 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
..|+..+.+.++. +.++.|+||--|++..+|.+.. +...+++.|+++..++.|.+++.+ ....+++
T Consensus 4 ~~RL~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~-----------~~l~~~i 69 (226)
T COG2384 4 SKRLTTVANLVKQ--GARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKK-----------NNLSERI 69 (226)
T ss_pred hHHHHHHHHHHHc--CCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHh-----------cCCcceE
Confidence 4688888888876 4459999999999999999887 678999999999999999988753 2345688
Q ss_pred EEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecC
Q 004178 597 VLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPN 652 (770)
Q Consensus 597 ef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN 652 (770)
+...+|....-..+..+|+|+..++=. .-...++++-...|+.-.-+|--||
T Consensus 70 ~vr~~dgl~~l~~~d~~d~ivIAGMGG----~lI~~ILee~~~~l~~~~rlILQPn 121 (226)
T COG2384 70 DVRLGDGLAVLELEDEIDVIVIAGMGG----TLIREILEEGKEKLKGVERLILQPN 121 (226)
T ss_pred EEeccCCccccCccCCcCEEEEeCCcH----HHHHHHHHHhhhhhcCcceEEECCC
Confidence 999999744333445799997765432 2233444444444442222334455
No 244
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.18 E-value=0.021 Score=65.59 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=82.3
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCC
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHG 612 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~s 612 (770)
-++|-+|||.-.+...+-+.+ ...|+-+|+|+-.++....+.. ...+-..+...|+..+.+++.+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~-------------~~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA-------------KERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc-------------cCCcceEEEEecchhccCCCcc
Confidence 389999999999998887766 4789999999998887765331 2345689999999999999999
Q ss_pred ccEEEeccccccCChhHHH--------HHHHHHHHcccCC--EEEEEe
Q 004178 613 FDIGTCLEVIEHMEEDEAS--------QFGNIVLSSFRPR--ILIVST 650 (770)
Q Consensus 613 FDlVVc~eVLEHL~~d~~~--------~fleeI~rvLKPG--~LIIST 650 (770)
||+|+-.+.++++..+... ....++.++|+|| .+.++.
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9999999999998754333 3356799999998 444444
No 245
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.088 Score=54.03 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=79.2
Q ss_pred HHHHHHhhc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEE
Q 004178 521 EYALQHIKE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVL 598 (770)
Q Consensus 521 e~Il~~L~~--~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef 598 (770)
+.+-+++.. ..+.++||+=+|+|.++...+.++. .+++.||.+...+...++++... +...++.+
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l-----------~~~~~~~~ 97 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKAL-----------GLEGEARV 97 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHh-----------CCccceEE
Confidence 344455554 5789999999999999988887763 89999999999999999987532 12357888
Q ss_pred EECCccccC-CCC--CCccEEEeccccc--cCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 599 FDGSITVFD-SRL--HGFDIGTCLEVIE--HMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 599 ~~GDaedlp-~~d--~sFDlVVc~eVLE--HL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
+..|+...- ... ..||+|+.-=-.+ .++ .......-.-.++|+|+ .+++.+...
T Consensus 98 ~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~-~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 98 LRNDALRALKQLGTREPFDLVFLDPPYAKGLLD-KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EeecHHHHHHhcCCCCcccEEEeCCCCccchhh-HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 899987431 112 2499996632222 111 11122211235789999 666665543
No 246
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.85 E-value=0.11 Score=55.80 Aligned_cols=119 Identities=17% Similarity=0.120 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCccchHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc---------cccCCCCC--------
Q 004178 530 SCATTLVDFGCGSGSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK---------LDAAVPCT-------- 591 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~---------~~~l~pr~-------- 591 (770)
.++.++||||||.-.+- ..+.+.. .+|+..|.++..++..++-++.. ..+ -.-...+.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 35679999999986553 2333444 78999999998887666544322 110 00000000
Q ss_pred CCccE-EEEECCccccCCCC------CCccEEEeccccccCChh--HHHHHHHHHHHcccCC--EEEEEecC
Q 004178 592 DVKSA-VLFDGSITVFDSRL------HGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPR--ILIVSTPN 652 (770)
Q Consensus 592 ~~~~V-ef~~GDaedlp~~d------~sFDlVVc~eVLEHL~~d--~~~~fleeI~rvLKPG--~LIISTPN 652 (770)
....| .++..|+...++-. ..||+|++..++|-.-.+ .-....+++.++|||| .+++..-+
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 01124 46778887754321 249999999999988633 3344556799999999 44444444
No 247
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.47 E-value=0.074 Score=59.39 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=74.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh-hhhhcccccCCCCCCCccEEEEECCccccC-C
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH-SKLSKKLDAAVPCTDVKSAVLFDGSITVFD-S 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~-~~~s~~~~~l~pr~~~~~Vef~~GDaedlp-~ 608 (770)
...+||-+|-|.|--++.|.+.. ...+++-+|++|+|++.++++.- ...++. .-..++++.+..|+.+.- .
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~------sf~dpRv~Vv~dDAf~wlr~ 361 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQG------SFSDPRVTVVNDDAFQWLRT 361 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccC------CccCCeeEEEeccHHHHHHh
Confidence 46799999999999999999986 57899999999999999985321 111111 224568999999976532 2
Q ss_pred CCCCccEEEec------cccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 609 RLHGFDIGTCL------EVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 609 ~d~sFDlVVc~------eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
....||.|+.- .++..+. ...|-.-+.+.|+++ .+++
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEE
Confidence 34589998752 2333332 124444678899998 4444
No 248
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.18 E-value=0.12 Score=54.83 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHhhc-CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EE
Q 004178 521 EYALQHIKE-SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VL 598 (770)
Q Consensus 521 e~Il~~L~~-~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V-ef 598 (770)
..+++.... .+++.+||+|.-||.|+..+++.+. .+|+|+|..-..+..--+ ..++| .+
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR-----------------~d~rV~~~ 128 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLR-----------------NDPRVIVL 128 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHh-----------------cCCcEEEE
Confidence 334444443 4688999999999999999999874 899999998876655422 12344 44
Q ss_pred EECCccccCCC--CCCccEEEeccccccCChhHHHHHHHHHHHcccCC--EEEEEecCCc
Q 004178 599 FDGSITVFDSR--LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 654 (770)
Q Consensus 599 ~~GDaedlp~~--d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG--~LIISTPN~e 654 (770)
...++..+... .+..|+++|--.+.-+. .++..+..+++|+ .+...-|-++
T Consensus 129 E~tN~r~l~~~~~~~~~d~~v~DvSFISL~-----~iLp~l~~l~~~~~~~v~LvKPQFE 183 (245)
T COG1189 129 ERTNVRYLTPEDFTEKPDLIVIDVSFISLK-----LILPALLLLLKDGGDLVLLVKPQFE 183 (245)
T ss_pred ecCChhhCCHHHcccCCCeEEEEeehhhHH-----HHHHHHHHhcCCCceEEEEecchhh
Confidence 44566555432 23688999977765443 5555688899997 5555666544
No 249
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.07 E-value=0.1 Score=54.89 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=71.4
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHH----HHHHHHHHhhhhhcccccCCCCCCCccEEEEECCc
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKS----LSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 603 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeem----Le~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDa 603 (770)
...++.+||-+|.++|.....+++..++.+.|++|+.|+.. +..|++ .+||--+.+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~------------------R~NIiPIl~DA 131 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK------------------RPNIIPILEDA 131 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH------------------STTEEEEES-T
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc------------------CCceeeeeccC
Confidence 34568899999999999999999987677899999999954 444443 24788788888
Q ss_pred cccC---CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 604 TVFD---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 604 edlp---~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
.... .--..+|+|++--. .+++.+.+..++...||+| .+++..
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA----QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CChHHhhcccccccEEEecCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 6432 12357899876543 2478888888899999998 555543
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.87 E-value=0.13 Score=56.39 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=51.3
Q ss_pred hHHHHHHHHH---HHHhhcCC-----CCEEEEEcCccchHHHHH-hcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 004178 514 PLSKQRVEYA---LQHIKESC-----ATTLVDFGCGSGSLLDSL-LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 584 (770)
Q Consensus 514 PL~~qR~e~I---l~~L~~~~-----~~rVLDIGCGtG~ll~~L-Ak~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~ 584 (770)
|--+.|+.+| .+.+.... .-++||||||....--.| ++.. ..+++|.||++..++.|++++....
T Consensus 77 P~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~---- 150 (299)
T PF05971_consen 77 PPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNP---- 150 (299)
T ss_dssp --HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-----
T ss_pred CCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhcc----
Confidence 4445676664 45554322 458999999976443223 2322 2899999999999999999886421
Q ss_pred ccCCCCCCCccEEEEECCccc-----cCCCCCCccEEEeccccccCC
Q 004178 585 DAAVPCTDVKSAVLFDGSITV-----FDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 585 ~~l~pr~~~~~Vef~~GDaed-----lp~~d~sFDlVVc~eVLEHL~ 626 (770)
....+|+++...-.. +......||+.+|.=-++--.
T Consensus 151 ------~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 151 ------NLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp ------T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS-
T ss_pred ------ccccceEEEEcCCccccchhhhcccceeeEEecCCccccCh
Confidence 223467776553221 112235799999976664443
No 251
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.72 E-value=0.13 Score=53.63 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=52.0
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 605 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed 605 (770)
.-...|||||-|.++..|+... |..-+.|++|....-++.++++.+..... ..+...++.....++..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~-----a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTS-----AEGQYPNISVLRTNAMK 128 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccc-----cccccccceeeeccchh
Confidence 4568999999999999999998 78899999999999999999887653221 12335567776666543
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.04 Score=55.49 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred HHHHHhhcCCCCEEEEEcCccchH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE
Q 004178 522 YALQHIKESCATTLVDFGCGSGSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD 600 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~l-l~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~ 600 (770)
.++...+...+.+||++|.|--.+ +..+|... +...|.-.|=+++.++..++.....+. .....+....
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~---------s~~tsc~vlr 89 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA---------SSLTSCCVLR 89 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc---------cccceehhhH
Confidence 344444445678999999995444 44455554 678999999999999888775432211 1111221111
Q ss_pred CCcc--ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 601 GSIT--VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 601 GDae--dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
-+.. ....+...||.|+|..++ .++ +..+.+.+.|..+|+|. ..++..|.+
T Consensus 90 w~~~~aqsq~eq~tFDiIlaADCl-Ffd-E~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 90 WLIWGAQSQQEQHTFDIILAADCL-FFD-EHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHHhhhHHHHhhCcccEEEeccch-hHH-HHHHHHHHHHHHHhCcccceeEecCcc
Confidence 1111 111233589999999988 444 56677888999999996 777777764
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=94.51 E-value=0.21 Score=53.47 Aligned_cols=108 Identities=9% Similarity=-0.030 Sum_probs=73.7
Q ss_pred hhcCCchHHHHHH------HHHHHHhhcCCCC--EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 004178 508 QALFSPPLSKQRV------EYALQHIKESCAT--TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 579 (770)
Q Consensus 508 ~~~F~PPL~~qR~------e~Il~~L~~~~~~--rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~ 579 (770)
..+|.+.+...|. +.+++.+...++. +|||+=+|.|..+..++..+ ++|+++|-++......++.+...
T Consensus 57 vDF~~~~~a~rR~~~~g~~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra 133 (250)
T PRK10742 57 VDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARG 133 (250)
T ss_pred EEccCchHHHHHHhcCCCccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHh
Confidence 3445555544444 6677877766666 99999999999999999987 77999999998888877776542
Q ss_pred hhcccccCCCCCC---CccEEEEECCccccCC-CCCCccEEEecccccc
Q 004178 580 LSKKLDAAVPCTD---VKSAVLFDGSITVFDS-RLHGFDIGTCLEVIEH 624 (770)
Q Consensus 580 ~s~~~~~l~pr~~---~~~Vef~~GDaedlp~-~d~sFDlVVc~eVLEH 624 (770)
... +.-. ..+++++++|..+.-. ....||+|+.-=.+.|
T Consensus 134 ~~~------~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 134 YAD------AEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred hhc------cccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 110 0101 1468899998765322 2246999976433333
No 254
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=94.12 E-value=0.025 Score=51.21 Aligned_cols=98 Identities=17% Similarity=0.113 Sum_probs=35.5
Q ss_pred EEEcCccchHHHHHhcCCCCCc--eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--CCC
Q 004178 536 VDFGCGSGSLLDSLLDYPTALE--KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--RLH 611 (770)
Q Consensus 536 LDIGCGtG~ll~~LAk~ggp~~--~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~--~d~ 611 (770)
||+|+..|..+..+++...+.. +++++|..+. .+.+++.+++ .....++++++++..+.-. ...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~-----------~~~~~~~~~~~g~s~~~l~~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK-----------AGLSDRVEFIQGDSPDFLPSLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------------------GGG-BTEEEEES-THHHHHHHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh-----------cCCCCeEEEEEcCcHHHHHHcCCC
Confidence 6899999999888887543333 7999999985 2222222211 0123479999999765311 246
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEE
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LII 648 (770)
.||+|+.-. .|-.+.....+ +.+...|+|| ++++
T Consensus 69 ~~dli~iDg--~H~~~~~~~dl-~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 69 PIDLIFIDG--DHSYEAVLRDL-ENALPRLAPGGVIVF 103 (106)
T ss_dssp -EEEEEEES-----HHHHHHHH-HHHGGGEEEEEEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHH-HHHHHHcCCCeEEEE
Confidence 899996644 23332333343 4688899999 4444
No 255
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=94.02 E-value=0.38 Score=50.71 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC--
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD-- 607 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp-- 607 (770)
.++.+||.||-|-|.....+-+.. + .+=+-++..++.+++-++.- -....+|..+.|-.++.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~-p-~~H~IiE~hp~V~krmr~~g-------------w~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP-P-DEHWIIEAHPDVLKRMRDWG-------------WREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC-C-cceEEEecCHHHHHHHHhcc-------------cccccceEEEecchHhhhcc
Confidence 578999999999999988776665 2 55677899999998876521 123357888888766532
Q ss_pred CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEE
Q 004178 608 SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRIL 646 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~L 646 (770)
.+++.||.|.---.-+|-. +...|.+.+.|+|||+.+
T Consensus 165 L~d~~FDGI~yDTy~e~yE--dl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYE--DLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred ccccCcceeEeechhhHHH--HHHHHHHHHhhhcCCCce
Confidence 2467899997644445554 444555689999999833
No 256
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.00 E-value=0.42 Score=53.81 Aligned_cols=126 Identities=17% Similarity=0.289 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch----HHHHHhcC--CCCCceEEEEeC----ChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 521 EYALQHIKESCATTLVDFGCGSGS----LLDSLLDY--PTALEKIVGVDI----SQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~----ll~~LAk~--ggp~~~VvGVDI----SeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
+.|++.+...+.-+|+|+|.|.|. +...|+.+ ++|.-++|||+. +...++.+.+++.+.....
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l------- 172 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL------- 172 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc-------
Confidence 345566666667799999999996 44555554 346679999999 8889999988887654332
Q ss_pred CCCccEEEEE---CCccccCC-----CCCCccEEEeccccccCCh------hHHHHHHHHHHHcccCCEEEEEecCCchh
Q 004178 591 TDVKSAVLFD---GSITVFDS-----RLHGFDIGTCLEVIEHMEE------DEASQFGNIVLSSFRPRILIVSTPNYEYN 656 (770)
Q Consensus 591 ~~~~~Vef~~---GDaedlp~-----~d~sFDlVVc~eVLEHL~~------d~~~~fleeI~rvLKPG~LIISTPN~efN 656 (770)
+ -..+|.. .+++++.. ..+..=+|-|...+||+.+ ++...|++ ..+.|+|.++++..++.+.|
T Consensus 173 -g-v~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n 249 (374)
T PF03514_consen 173 -G-VPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHN 249 (374)
T ss_pred -C-ccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCC
Confidence 1 1234433 23333322 2233445556778899972 24567886 77799999888877776654
No 257
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.54 E-value=0.22 Score=54.61 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
++.+++.+...++...+|.--|.|..+..+++..++..+++|+|-++.+++.|++++.. ...+++++
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-------------~~~r~~~v 78 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-------------FDGRVTLV 78 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-------------cCCcEEEE
Confidence 34566778888889999999999999999999886778899999999999999998743 23578888
Q ss_pred ECCccccCCC-----CCCccEEEe
Q 004178 600 DGSITVFDSR-----LHGFDIGTC 618 (770)
Q Consensus 600 ~GDaedlp~~-----d~sFDlVVc 618 (770)
+++..++... ...+|.|+.
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILL 102 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEE
Confidence 8876654331 245666654
No 258
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.42 E-value=0.08 Score=55.70 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=51.9
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
....|+|.-||-|..+..++..+ ..|++||+++.-+..|+++++-+ +-+.+|+|.+||..++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiY-----------GI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVY-----------GVPDRITFICGDFLDL 155 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceee-----------cCCceeEEEechHHHH
Confidence 56789999999999999898887 78999999999999999877532 2344899999997653
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.05 E-value=0.2 Score=52.19 Aligned_cols=112 Identities=17% Similarity=0.114 Sum_probs=52.7
Q ss_pred hhcCCCCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCc
Q 004178 527 IKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 603 (770)
Q Consensus 527 L~~~~~~rVLDIGCGtG~ll~~LAk---~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDa 603 (770)
+-..+++.|+++|.-.|.-+..+|. ..+...+|+|+||+-......+...+ ...++|++++||.
T Consensus 28 i~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h-------------p~~~rI~~i~Gds 94 (206)
T PF04989_consen 28 IWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH-------------PMSPRITFIQGDS 94 (206)
T ss_dssp HHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----------------TTEEEEES-S
T ss_pred HHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc-------------cccCceEEEECCC
Confidence 3344579999999988877765543 22345899999997544433221111 1236899999997
Q ss_pred cccCC------CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 604 TVFDS------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 604 edlp~------~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.+... .....+-++.+.=-+|..+.....|. ..+.++++| ++||..-+
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~-~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELE-AYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHH-HHHHT--TT-EEEETSHH
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHH-HhCccCCCCCEEEEEecc
Confidence 65321 11123322222222344434555555 488899999 77775444
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.94 E-value=0.22 Score=54.87 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEE
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
++.+++.+...++...+|.=-|.|..+..+++..++ .+|+|+|-++++++.|++++.. ...++.++
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-------------~~~r~~~~ 74 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-------------FDDRFIFI 74 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-------------CCTTEEEE
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-------------ccceEEEE
Confidence 446677777888889999999999999999988644 9999999999999999886632 24578899
Q ss_pred ECCccccCC------CCCCccEEEe
Q 004178 600 DGSITVFDS------RLHGFDIGTC 618 (770)
Q Consensus 600 ~GDaedlp~------~d~sFDlVVc 618 (770)
+++..++.. ....+|.|+.
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEE
Confidence 888766432 2346777765
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.89 E-value=0.22 Score=55.46 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=65.3
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
....+++|||+|.|.|.-+.++-...+....++-++.|+..-+.... ++... ......+...|++.--
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv-----------~t~~td~r~s~vt~dR 177 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENV-----------STEKTDWRASDVTEDR 177 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhc-----------ccccCCCCCCccchhc
Confidence 34567899999999999888777766555778888888765444432 22111 1111223333333211
Q ss_pred CCCCCccEEEeccccccCCh----hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 608 SRLHGFDIGTCLEVIEHMEE----DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 608 ~~d~sFDlVVc~eVLEHL~~----d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.....-|.+++..+++.+-+ .+....++.+..++.|| .++|..|.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 12233444444444443332 33444777889999999 66666554
No 262
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.84 E-value=0.59 Score=51.60 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=88.2
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh---------------hhhhcc--cccCCC----
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH---------------SKLSKK--LDAAVP---- 589 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~---------------~~~s~~--~~~l~p---- 589 (770)
..-+||--|||.|+++..|+..+ ..+-|-+.|--|+-...=.++ .+.+.. .+.+.|
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G---~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLG---FKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhc---ccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 45689999999999999999988 677777888777643322110 000000 111111
Q ss_pred -------CCCCccEEEEECCccccCCC---CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHH
Q 004178 590 -------CTDVKSAVLFDGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAIL 659 (770)
Q Consensus 590 -------r~~~~~Vef~~GDaedlp~~---d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf 659 (770)
+..........||..+.-.. .+.||+|+..+.|.--. ..-.+++.|..+||||.+.|-. -+++
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl-----GPLl 299 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL-----GPLL 299 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec-----ccee
Confidence 11112233355665553322 24799998877665443 2334556799999999665522 1222
Q ss_pred hhhccccCCCCCchhhhhccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 660 QKSSSTIQEDDPDEKTQLQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 660 ~~~~~~g~~e~pde~~~~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
..+. ++ . -..+.-..+++-+++. .++...||.++-.
T Consensus 300 YHF~--------d~------~-g~~~~~siEls~edl~----~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 300 YHFE--------DT------H-GVENEMSIELSLEDLK----RVASHRGFEVEKE 335 (369)
T ss_pred eecc--------CC------C-CCcccccccccHHHHH----HHHHhcCcEEEEe
Confidence 2221 00 0 0012334678888888 5677779998653
No 263
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=92.83 E-value=0.14 Score=41.81 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred hhhHHHhhhhhcccCcceeecccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeeEEEEeeccCCccccc
Q 004178 213 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 292 (770)
Q Consensus 213 p~~~l~~fc~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 292 (770)
|+..|-.+|..+....|.|... . ..|. .....|.|+|.|.. .+
T Consensus 2 p~~~L~e~~~~~~~~~~~y~~~--~--------------------------~~g~--~~~~~f~~~v~i~~-------~~ 44 (68)
T cd00048 2 PKSLLQELAQKRGKPLPEYELV--E--------------------------EEGP--DHAPRFTVEVTVGG-------KI 44 (68)
T ss_pred hHHHHHHHHHHcCCCCCeEEEe--e--------------------------eeCC--CCCCeEEEEEEECC-------EE
Confidence 7889999999998999999886 1 0111 11245999999944 23
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 004178 293 SPKEFYKKQNESIENASLKVLSWL 316 (770)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~~~ 316 (770)
.....-++..+|-|+||.++|..|
T Consensus 45 ~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 45 TGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred EEEeecCCHHHHHHHHHHHHHHhC
Confidence 333455678899999999999653
No 264
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.22 Score=49.63 Aligned_cols=90 Identities=21% Similarity=0.219 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 514 PLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
|.....++-++..+...+..+++|+|.|.|+.....++.+ ....+|+++++-.+.+++- +.... ...
T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl--~a~R~---------g~~ 121 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRL--HAWRA---------GCA 121 (199)
T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHH--HHHHH---------hcc
Confidence 3444455566777777777899999999999998888776 3678999999999988753 33221 233
Q ss_pred ccEEEEECCccccCCCCCCccEE
Q 004178 594 KSAVLFDGSITVFDSRLHGFDIG 616 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d~sFDlV 616 (770)
....|..-|+-..+..+..+-+|
T Consensus 122 k~trf~RkdlwK~dl~dy~~vvi 144 (199)
T KOG4058|consen 122 KSTRFRRKDLWKVDLRDYRNVVI 144 (199)
T ss_pred cchhhhhhhhhhccccccceEEE
Confidence 46777777876666544444333
No 265
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=92.58 E-value=0.12 Score=45.77 Aligned_cols=88 Identities=31% Similarity=0.487 Sum_probs=63.5
Q ss_pred cCCCCceeEEEEEEEEEecccccccceec---ccceeeeccCCcccccceeeeeeccccccceecccCCchhhhhhccCC
Q 004178 398 YPSNGCLSFISYSVSLVIEGETMKELLES---REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADD 474 (770)
Q Consensus 398 ~~~~g~~~~i~y~~~l~~~~~~~~~l~e~---~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elflaa~~~ 474 (770)
.|..|+.|-|.|++.+. +|+ .+-.+ +..++|.+|.+.+.+-++..+..|-+|+...|. +||...|-.....
T Consensus 4 ~~~~gd~V~i~y~~~~~-~g~---~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~--vp~~~ayg~~~~~ 77 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLE-DGK---VFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFY--VPPELAYGEKGLE 77 (94)
T ss_dssp SBSTTSEEEEEEEEEET-TSE---EEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEE--EEGGGTTTTTTBC
T ss_pred cCCCCCEEEEEEEEEEC-CCc---EEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeE--eCChhhcCccccC
Confidence 58999999999999996 432 22223 578999999999999999999999999999998 7776655543321
Q ss_pred ccchhhcccccccccceeeeec
Q 004178 475 SARTFSLLSSRACCLEYHITLL 496 (770)
Q Consensus 475 ~~~diS~Ls~~~~~Ley~i~lL 496 (770)
.. .++.... +.|.+.++
T Consensus 78 ~~----~ip~~~~-l~f~Iell 94 (94)
T PF00254_consen 78 PP----KIPPNST-LVFEIELL 94 (94)
T ss_dssp TT----TBTTTSE-EEEEEEEE
T ss_pred CC----CcCCCCe-EEEEEEEC
Confidence 11 1333333 66666553
No 266
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.47 E-value=1.4 Score=47.51 Aligned_cols=136 Identities=21% Similarity=0.176 Sum_probs=85.7
Q ss_pred hhhhcCCchHHHHHHHHH------HHHhhcCCCCEEEEEcCccchHHHHHhcCC---CCCceEEEEeCChHHHHHHHHHH
Q 004178 506 MEQALFSPPLSKQRVEYA------LQHIKESCATTLVDFGCGSGSLLDSLLDYP---TALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 506 ~e~~~F~PPL~~qR~e~I------l~~L~~~~~~rVLDIGCGtG~ll~~LAk~g---gp~~~VvGVDISeemLe~ArkrL 576 (770)
+++..-.|..|+.|-+.. .+......+.+++|+|.|+..-++.|.+.. +...+.+.+|+|...++...+.+
T Consensus 47 Fe~I~~LPEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai 126 (321)
T COG4301 47 FEQITRLPEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAI 126 (321)
T ss_pred HHHHhccccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHH
Confidence 344444455555554431 123344568899999999887666554322 13478999999999998765544
Q ss_pred hhhhhcccccCCCCCCCccEEEEECCccc----cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 577 HSKLSKKLDAAVPCTDVKSAVLFDGSITV----FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 577 ~~~~s~~~~~l~pr~~~~~Vef~~GDaed----lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
... | ....+.-+.+|.+. ++ ..+.==.++....|..+.+++...|+..+...|+|| .+++.+-
T Consensus 127 ~~~------y-----~~l~v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 127 LRE------Y-----PGLEVNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred HHh------C-----CCCeEeehhhhHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 221 1 12345666777543 22 212222333456788998899999999999999999 7777665
Q ss_pred CC
Q 004178 652 NY 653 (770)
Q Consensus 652 N~ 653 (770)
-.
T Consensus 195 l~ 196 (321)
T COG4301 195 LR 196 (321)
T ss_pred cc
Confidence 43
No 267
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=92.13 E-value=0.22 Score=40.82 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=47.3
Q ss_pred hhhHHHhhhhhcccCcceeecccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeeEEEEeeccCCccccc
Q 004178 213 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 292 (770)
Q Consensus 213 p~~~l~~fc~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 292 (770)
|...|-.+|..+++ .|.|... .. . |......|.|+|.|-.+ .
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~--~~--------------------------~--g~~~~~~f~~~v~i~~~-------~ 42 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELV--KE--------------------------E--GPDHAPRFTVTVKVGGE-------Y 42 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEE--ee--------------------------e--CCCCCCcEEEEEEECCE-------E
Confidence 77899999999999 8999876 10 0 11112359999998432 1
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 004178 293 SPKEFYKKQNESIENASLKVLSWL 316 (770)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~~~ 316 (770)
-....-++..+|-|+||.++|..|
T Consensus 43 ~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 43 TGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred EEEeccCCHHHHHHHHHHHHHHhc
Confidence 124455778899999999999876
No 268
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=91.88 E-value=0.33 Score=43.20 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=55.9
Q ss_pred ChhhHHHhhhhhcccCcceeecccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeeEEEEeeccCC--cc
Q 004178 212 FPREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRD--PI 289 (770)
Q Consensus 212 ~p~~~l~~fc~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~~ 289 (770)
.||.+|..+|...++..|+|...+. .|-.....|.|+|.|-.-... -+
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~------------------------------~Gp~~~~~F~ykV~i~~~~~~~~~~ 51 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSE------------------------------SGPDHRKLFLYKVVIPGLEYPFEGS 51 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEec------------------------------cCCCccEEEEEEEEEcCCCCCCcce
Confidence 5899999999999999999998711 122233459999999877653 34
Q ss_pred cccCc-hhhhhhhhhhHhhhhhHHHHHH
Q 004178 290 LECSP-KEFYKKQNESIENASLKVLSWL 316 (770)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~~~l~~l~~~ 316 (770)
++|-+ .+-=.+-.||=..||..+|.+|
T Consensus 52 ~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 52 IECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred EEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 55444 4555666789999999999876
No 269
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.35 Score=44.70 Aligned_cols=68 Identities=31% Similarity=0.433 Sum_probs=53.5
Q ss_pred ecCCCCCCccCCCCceeEEEEEEEEEeccccccccee--cccceeeeccCCcccccceeeeeeccccccceec
Q 004178 389 SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLE--SREEFEFEMGTGAVIPQVEVVTAQMSVGQSACFC 459 (770)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~i~y~~~l~~~~~~~~~l~e--~~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~ 459 (770)
-|.--|--.+|-+|-.+-+-|+--|. +| +|+--. .+.-|+|-||.|.|+---+--+.|||||+.+..-
T Consensus 7 ~i~~Gdg~tfpK~Gqtvt~hYtg~L~-dG--~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLt 76 (108)
T KOG0544|consen 7 VISPGDGRTFPKKGQTVTVHYTGTLQ-DG--KKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLT 76 (108)
T ss_pred EeeCCCCcccCCCCCEEEEEEEeEec-CC--cEeecccccCCCeeEEecCcceeechhhcchhccccccceee
Confidence 34333444899999999999998776 33 333333 5578999999999999999999999999998764
No 270
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=91.69 E-value=0.32 Score=49.45 Aligned_cols=124 Identities=16% Similarity=0.276 Sum_probs=84.3
Q ss_pred cccccccccccccccccccCCCCceeee-ecCCCCCCccCCCCceeEEEEEEEEEecccccccceec---ccceeeeccC
Q 004178 361 QRKMGEKLLQANSINTLNAIPEHGIYCL-SIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLES---REEFEFEMGT 436 (770)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~i~y~~~l~~~~~~~~~l~e~---~~ef~fe~g~ 436 (770)
++.+-.......+.. .+......+... ..+++.+|..|..|+.|.+-|.+.+. +|+ ++.+ .+-++|-+|.
T Consensus 48 e~~~I~~~i~~~~~~-~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~-dG~----v~~ss~~~~P~~f~vg~ 121 (177)
T TIGR03516 48 EEAAIKRIISADSIV-KYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL-DGD----VIYSEEELGPQTYKVDQ 121 (177)
T ss_pred HHHHHHHHHHhCCCC-CceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeC-CCC----EEEeCCCCCCEEEEeCC
Confidence 344444444444432 234444554443 44678899999999999999999987 332 2332 2358899999
Q ss_pred CcccccceeeeeeccccccceecccCCchhhhhhccCCccchhhcccccccccceeeeeccc
Q 004178 437 GAVIPQVEVVTAQMSVGQSACFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 498 (770)
Q Consensus 437 ~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elflaa~~~~~~diS~Ls~~~~~Ley~i~lL~v 498 (770)
+.+.+-++..+..|.+|+++.|. +|+...+-..... ..++..+. |.+.++++.+
T Consensus 122 ~~vi~Gl~e~L~~Mk~Ge~~~~~--iP~~~AYG~~g~~-----~~Ippns~-L~f~IeL~~i 175 (177)
T TIGR03516 122 QDLFSGLRDGLKLMKEGETATFL--FPSHKAYGYYGDQ-----NKIGPNLP-IISTVTLLNI 175 (177)
T ss_pred cchhHHHHHHHcCCCCCCEEEEE--ECHHHcCCCCCCC-----CCcCcCCc-EEEEEEEEEe
Confidence 99999999999999999999999 7777666554221 12344555 7777777654
No 271
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.37 E-value=0.27 Score=51.70 Aligned_cols=142 Identities=20% Similarity=0.170 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcC-CCCCceEEEEeCChHHHHHHHHHHhhh----------
Q 004178 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDY-PTALEKIVGVDISQKSLSRAAKIIHSK---------- 579 (770)
Q Consensus 511 F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~-ggp~~~VvGVDISeemLe~ArkrL~~~---------- 579 (770)
|..-|...-++.....+....+-++.|-.||.|+++-.+.-. ......|+|-||++++|+.|++++.-.
T Consensus 31 FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 31 FPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp --HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 333455555555555555667789999999999998766422 224578999999999999998754210
Q ss_pred -----hh---------------cccccCCCCCCCccEEEEECCccccCC-----CCCCccEEEecc----ccccC---Ch
Q 004178 580 -----LS---------------KKLDAAVPCTDVKSAVLFDGSITVFDS-----RLHGFDIGTCLE----VIEHM---EE 627 (770)
Q Consensus 580 -----~s---------------~~~~~l~pr~~~~~Vef~~GDaedlp~-----~d~sFDlVVc~e----VLEHL---~~ 627 (770)
.. +..+.+.-.++.......++|+.+... .....|+|+.-- ..+|- ..
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 00 000001112234457788888876322 234469988732 22222 34
Q ss_pred hHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 628 DEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 628 d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++...+++.++.+|-++ ++.++.-.
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~~k~ 216 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVSDKG 216 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEEESS
T ss_pred CcHHHHHHHHHhhCCCCcEEEEecCC
Confidence 67778888899999434 66665444
No 272
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.88 E-value=0.72 Score=48.70 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=53.9
Q ss_pred CCEEEEEcCccchHHHHHhcCCC-------CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcc
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPT-------ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 604 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~gg-------p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDae 604 (770)
+-+|+|+|.|+|.++..+++... ...+++-||+|+.+.+.-++++...... ......+|.++ .++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~------~~~~~~~i~w~-~~l~ 91 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK------DTEFGDPIRWL-DDLE 91 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---------STTTCGCEEEE-SSGG
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc------ccccCCccchh-hhhh
Confidence 47999999999999987765321 1258999999999998888876432100 00123356663 3554
Q ss_pred ccCCCCCCccEEEeccccccCC
Q 004178 605 VFDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 605 dlp~~d~sFDlVVc~eVLEHL~ 626 (770)
+.+ ..-+|++++++.-+|
T Consensus 92 ~~p----~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 92 EVP----FPGFIIANELFDALP 109 (252)
T ss_dssp CS-----CCEEEEEESSGGGS-
T ss_pred ccc----CCEEEEEeeehhcCc
Confidence 443 567889999999888
No 273
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.22 E-value=0.7 Score=46.27 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 511 FSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 511 F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
|..+....-++.++.... .+++.|||.=||+|..+.+..+.+ .+.+|+|++++..+.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 344555555666666543 358899999999999999888877 789999999999999864
No 274
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.18 E-value=0.59 Score=52.78 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred hhcCCchHHHHHHHHHHHH---h---hc--CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 004178 508 QALFSPPLSKQRVEYALQH---I---KE--SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 579 (770)
Q Consensus 508 ~~~F~PPL~~qR~e~Il~~---L---~~--~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~ 579 (770)
...||.|....-++.-+-. + .. ..+-+|||.=+|+|.=+...+...+...+|+.-|+|+++++..+++++-.
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 4557777665544442222 2 11 23458999999999877766665334579999999999999999987521
Q ss_pred hhcccccCCCCCCCc-cEEEEECCccccC-CCCCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEEec
Q 004178 580 LSKKLDAAVPCTDVK-SAVLFDGSITVFD-SRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 580 ~s~~~~~l~pr~~~~-~Vef~~GDaedlp-~~d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+... .++..+.|+..+- .....||+| .+++ --...|+..+.+.++.| ++.||.-
T Consensus 98 -----------~~~~~~~~v~~~DAn~ll~~~~~~fD~I-------DlDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 98 -----------GLEDERIEVSNMDANVLLYSRQERFDVI-------DLDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -----------T-SGCCEEEEES-HHHHHCHSTT-EEEE-------EE--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred -----------cccCceEEEehhhHHHHhhhccccCCEE-------EeCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 1122 5889999987643 245789999 5542 12345666788899998 5556543
No 275
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=89.76 E-value=1 Score=49.54 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=79.6
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++++||-||-|.|..++..+++. ....+.-+|+++..++..++.+.....++ ..++|.+.-||...+-
T Consensus 118 s~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~gy--------~~~~v~l~iGDG~~fl 188 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACGY--------EGKKVKLLIGDGFLFL 188 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhccc--------CCCceEEEeccHHHHH
Confidence 44568999999999999999998884 77899999999999999998877665543 4568999999865432
Q ss_pred --CCCCCccEEEeccccccCCh--hHHHHHHHHHHHcccCCEEEE
Q 004178 608 --SRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 608 --~~d~sFDlVVc~eVLEHL~~--d~~~~fleeI~rvLKPG~LII 648 (770)
...+.||+|+.--.=--.+. --.+.+...+.+.||++.+++
T Consensus 189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~ 233 (337)
T KOG1562|consen 189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVC 233 (337)
T ss_pred HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 12578999975221111111 112344556888999984433
No 276
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.61 E-value=0.82 Score=47.62 Aligned_cols=115 Identities=10% Similarity=0.100 Sum_probs=69.9
Q ss_pred HHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHH--HHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 524 LQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAA--KIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 524 l~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~Ar--krL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
+......++.+|+|+=-|.|++++.|+...++...|+++=..+...-..+ .++..... .....|++.+-.
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~--------e~~~aN~e~~~~ 112 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAR--------EPVYANVEVIGK 112 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhh--------hhhhhhhhhhCC
Confidence 34456678899999999999999999998888889999876654111100 01110000 112234555555
Q ss_pred CccccCCCCCCccEEEe--------ccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 602 SITVFDSRLHGFDIGTC--------LEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc--------~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
++..+. ..+..|++.. .--+| ......+...+++.|||| +++|..
T Consensus 113 ~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~---~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 113 PLVALG-APQKLDLVPTAQNYHDMHNKNIH---PATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred cccccC-CCCcccccccchhhhhhhccccC---cchHHHHHHHHHHhcCCCcEEEEEe
Confidence 555444 3344555544 22232 456677777899999999 555543
No 277
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.03 E-value=25 Score=37.79 Aligned_cols=155 Identities=11% Similarity=0.031 Sum_probs=91.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc-cCC-
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV-FDS- 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed-lp~- 608 (770)
....|+.+|||-=.-...|... ...+++-+|. ++.++.-++.+.... .....+.+++..|+.+ ...
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~-P~v~~~K~~~l~~~~---------~~~~~~~~~v~~Dl~~~w~~~ 148 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQ-PAVLAFKEKVLAELG---------AEPPAHRRAVPVDLRQDWPAA 148 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC--CCCeEEECCC-hHHHHHHHHHHHHcC---------CCCCCceEEeccCchhhHHHH
Confidence 3568999999987766666322 1255666663 556666655554211 0123467888888752 100
Q ss_pred -CCCCc-----cEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHH----HhhhccccCCCCCchhhhh
Q 004178 609 -RLHGF-----DIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAI----LQKSSSTIQEDDPDEKTQL 677 (770)
Q Consensus 609 -~d~sF-----DlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~l----f~~~~~~g~~e~pde~~~~ 677 (770)
...+| -++++-+++.+++++....+++.+.+...|| .+++...+.-.... ..... .
T Consensus 149 L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~-------------~ 215 (260)
T TIGR00027 149 LAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVY-------------H 215 (260)
T ss_pred HHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHH-------------H
Confidence 11233 4788889999999988888998888888888 77665544310100 11000 0
Q ss_pred ccccccCCCcccccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 678 QSCKFRNHDHKFEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 678 ~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
...........+.+++.+..+|+ ..+|+.+.-.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~l----~~~Gw~~~~~ 248 (260)
T TIGR00027 216 AARGVDGSGLVFGIDRADVAEWL----AERGWRASEH 248 (260)
T ss_pred hhhcccccccccCCChhhHHHHH----HHCCCeeecC
Confidence 00112223445667899999766 6789887543
No 278
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.86 E-value=0.37 Score=45.64 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 565 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDIS 565 (770)
.+...-+|||||+|.+...|...+ ..=.|+|..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 346689999999999999999887 778999964
No 279
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=88.76 E-value=2.2 Score=45.46 Aligned_cols=108 Identities=13% Similarity=0.085 Sum_probs=57.6
Q ss_pred cCCchHHHHHHH-------HHHHHhhcCCC--CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhh
Q 004178 510 LFSPPLSKQRVE-------YALQHIKESCA--TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKL 580 (770)
Q Consensus 510 ~F~PPL~~qR~e-------~Il~~L~~~~~--~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~ 580 (770)
.|.+.....|.. .+++.+...++ .+|||.=+|-|.-+..++..+ ++|+|++-|+-+....+.-+....
T Consensus 45 DF~~g~~~~R~~~~~g~~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~ 121 (234)
T PF04445_consen 45 DFHPGAAAYRRKHGGGKGDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQ 121 (234)
T ss_dssp -SSSHHHHHHHHHSSGGGSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHhhcCCCccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHH
Confidence 455555555543 34555544443 499999999999999888776 799999999965555444333222
Q ss_pred hcccccCCC-CCCCccEEEEECCccc-cCCCCCCccEEEecccccc
Q 004178 581 SKKLDAAVP-CTDVKSAVLFDGSITV-FDSRLHGFDIGTCLEVIEH 624 (770)
Q Consensus 581 s~~~~~l~p-r~~~~~Vef~~GDaed-lp~~d~sFDlVVc~eVLEH 624 (770)
... .. ..-..+++++.+|..+ +..++.+||+|.+-=++.|
T Consensus 122 ~~~----~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 122 QDP----ELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HST----TTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S---
T ss_pred hCc----HhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 110 00 0012479999999776 4445689999987555544
No 280
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.29 E-value=0.97 Score=48.60 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=50.4
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--CC
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LH 611 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d~ 611 (770)
+|+|+-||.|.+...+.+.+ ...|.++|+++.+++..+++.. . ..+.+|+.++... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~-----------------~-~~~~~Di~~~~~~~~~~ 61 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFP-----------------N-KLIEGDITKIDEKDFIP 61 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCC-----------------C-CCccCccccCchhhcCC
Confidence 68999999999988887765 3678999999999988877541 1 1556777776543 35
Q ss_pred CccEEEec
Q 004178 612 GFDIGTCL 619 (770)
Q Consensus 612 sFDlVVc~ 619 (770)
.+|+++..
T Consensus 62 ~~D~l~~g 69 (275)
T cd00315 62 DIDLLTGG 69 (275)
T ss_pred CCCEEEeC
Confidence 79999874
No 281
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.90 E-value=3.9 Score=42.99 Aligned_cols=104 Identities=9% Similarity=0.099 Sum_probs=73.4
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+||=+|..+|.....++...+ ...++||+.|+.+....-.... ..+|+--+.+|+....
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~--------------~R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE--------------KRPNIIPILEDARKPE 137 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH--------------hCCCceeeecccCCcH
Confidence 346789999999999999999999884 6899999999976654433221 1246666777775432
Q ss_pred C---CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEe
Q 004178 608 S---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVST 650 (770)
Q Consensus 608 ~---~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIIST 650 (770)
. --...|+|++-- -.+++.+.+..++...||+| .+++..
T Consensus 138 ~Y~~~Ve~VDviy~DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 138 KYRHLVEKVDVIYQDV----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred HhhhhcccccEEEEec----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 1 124588875432 23578888889999999997 555543
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=87.86 E-value=1.5 Score=47.28 Aligned_cols=57 Identities=11% Similarity=0.089 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
...++.++.... .+++.|||.=||+|..+.+..+.+ .+.+|+|++++.++.|++|+.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHH
Confidence 334444444433 468999999999999998877776 789999999999999999884
No 283
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=87.66 E-value=0.58 Score=48.42 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDIS 565 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDIS 565 (770)
.++.+|||+||..|.++....+..+|.+.|.|||+-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 468899999999999999888888788999999963
No 284
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.66 E-value=1.7 Score=48.97 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=82.1
Q ss_pred hhhhcCCchHHHHHHHHHHHHhhcCC---CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhc
Q 004178 506 MEQALFSPPLSKQRVEYALQHIKESC---ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSK 582 (770)
Q Consensus 506 ~e~~~F~PPL~~qR~e~Il~~L~~~~---~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~ 582 (770)
...+-||+|-.+--.+.-+..+.... ..+|+|.=+|+|.=++..+...+. .+|+.-|+|+++++.+++++..
T Consensus 24 ~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~---- 98 (380)
T COG1867 24 KRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRL---- 98 (380)
T ss_pred CCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHh----
Confidence 34566777776655555444444433 889999999999988877776632 3899999999999999998742
Q ss_pred ccccCCCCCCCccEEEEECCccccCCC-CCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEEec
Q 004178 583 KLDAAVPCTDVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 583 ~~~~l~pr~~~~~Vef~~GDaedlp~~-d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+...+...+..|+..+-.. ...||+| -+++ .....|++...+.++.| ++.+|.-
T Consensus 99 --------N~~~~~~v~n~DAN~lm~~~~~~fd~I-------DiDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 99 --------NSGEDAEVINKDANALLHELHRAFDVI-------DIDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred --------cCcccceeecchHHHHHHhcCCCccEE-------ecCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 2233455555776554332 3678887 3321 01234555677777775 6666543
No 285
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.43 E-value=3.4 Score=47.37 Aligned_cols=115 Identities=14% Similarity=0.144 Sum_probs=78.3
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccc
Q 004178 526 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITV 605 (770)
Q Consensus 526 ~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaed 605 (770)
.+.+.++.||||+.+..|.=+.++|..-...+.|++.|.+..-+...+.+++. -+..+......|..+
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r------------lGv~ntiv~n~D~~e 303 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR------------LGVTNTIVSNYDGRE 303 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH------------hCCCceEEEccCccc
Confidence 34677899999999999877666665433347999999999999988888763 245677777788776
Q ss_pred cCC--CCCCccEEE----ecc--ccccCC--------------hhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 606 FDS--RLHGFDIGT----CLE--VIEHME--------------EDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 606 lp~--~d~sFDlVV----c~e--VLEHL~--------------~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
++. ..++||-|+ |++ ++.--+ ..-...++.....++++| +++-+|..
T Consensus 304 f~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 304 FPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 652 124799998 444 331100 011234444688999999 66667664
No 286
>PRK13699 putative methylase; Provisional
Probab=86.11 E-value=2.3 Score=44.67 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 004178 522 YALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578 (770)
Q Consensus 522 ~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~ 578 (770)
.+++... .+++.|||.=||+|..+.+..+.+ .+.+|+|++++..+.|.+++..
T Consensus 155 ~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 155 PLIESFT-HPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 4444333 368899999999999998887776 7899999999999999998854
No 287
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.92 E-value=3.7 Score=40.52 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=47.9
Q ss_pred eEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC--CCCccEEEeccccccCCh--------
Q 004178 558 KIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTCLEVIEHMEE-------- 627 (770)
Q Consensus 558 ~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~--d~sFDlVVc~eVLEHL~~-------- 627 (770)
+|+|+||-+++++.+++++.+. ....+++++..+=+.++.- .+.+|+|+.+ |.++|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-----------~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~ 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-----------GLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTK 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-----------T-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--
T ss_pred CEEEEECHHHHHHHHHHHHHhc-----------CCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcC
Confidence 6999999999999999998642 2334799999886665542 2479988764 334442
Q ss_pred --hHHHHHHHHHHHcccCC
Q 004178 628 --DEASQFGNIVLSSFRPR 644 (770)
Q Consensus 628 --d~~~~fleeI~rvLKPG 644 (770)
....++. .+.+.|+||
T Consensus 68 ~~TTl~Al~-~al~lL~~g 85 (140)
T PF06962_consen 68 PETTLKALE-AALELLKPG 85 (140)
T ss_dssp HHHHHHHHH-HHHHHEEEE
T ss_pred cHHHHHHHH-HHHHhhccC
Confidence 2234444 588999998
No 288
>PHA01634 hypothetical protein
Probab=85.65 E-value=3.2 Score=40.77 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=39.7
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
.+++|+|||.+-|.-+++++-.+. ..|+++++++...+..+++++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhh
Confidence 588999999999999998888774 789999999999999988663
No 289
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.24 E-value=0.36 Score=45.67 Aligned_cols=105 Identities=23% Similarity=0.390 Sum_probs=44.9
Q ss_pred CccEEEeccccccCC----hhHHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCchhhhhccccccCCCc
Q 004178 612 GFDIGTCLEVIEHME----EDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHDH 687 (770)
Q Consensus 612 sFDlVVc~eVLEHL~----~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh~DH 687 (770)
.||+|+|..|.-++- ++-+..|.+.+++.|+||.++|-.|.. +..+-.+.. .....+..-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~-w~sY~~~~~--------------~~~~~~~n~~ 65 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP-WKSYKKAKR--------------LSEEIRENYK 65 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE----HHHHHTTTT--------------S-HHHHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC-cHHHHHHhh--------------hhHHHHhHHh
Confidence 489999998865443 355667777899999999666655652 223222110 0011111122
Q ss_pred ccccCHHHHHHHHHHHHHHCCcEE-EEEeeeCCCCCCCCccceeeeeec
Q 004178 688 KFEWTRDQFNCWATELAARHNYSV-EFSGVGGSGDREPGFASQIAVFRS 735 (770)
Q Consensus 688 kfewTreEF~~Wa~~La~r~GY~V-EF~GvG~~p~~e~Gf~TQiAVF~R 735 (770)
...+.+++|..++... ..||.- +..++ ......||...|-+|++
T Consensus 66 ~i~lrP~~F~~~L~~~--evGF~~~e~~~~--~~~~~~gF~RpI~lf~K 110 (110)
T PF06859_consen 66 SIKLRPDQFEDYLLEP--EVGFSSVEELGV--PENSSKGFDRPIYLFRK 110 (110)
T ss_dssp H----GGGHHHHHTST--TT---EEEEE---------------EEEEE-
T ss_pred ceEEChHHHHHHHHhc--ccceEEEEEccc--CCCCCCCCCCcEEEEeC
Confidence 3457788888766421 236543 43333 22334688888888864
No 290
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=84.09 E-value=2 Score=49.41 Aligned_cols=43 Identities=21% Similarity=0.365 Sum_probs=37.3
Q ss_pred CEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 533 TTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
..|||||.|+|.+....++.++ ..|++++.-..|.+.|++..+
T Consensus 68 v~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHh
Confidence 4689999999999987777764 679999999999999998765
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=83.43 E-value=6.1 Score=42.47 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=61.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE-EEEECCccccCCC
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA-VLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V-ef~~GDaedlp~~ 609 (770)
+..+||++|.|+|-.+...+...+ .+|+-.|+..-+.... .+....... +...++.-.+ .+.-++..+..+.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~-~~~~~~~~~----l~~~g~~v~v~~L~Wg~~~~~~~~ 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLK-FNRDKNNIA----LNQLGGSVIVAILVWGNALDVSFR 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHH-Hhhhhhhhh----hhhcCCceeEEEEecCCcccHhhc
Confidence 467899999999977766666442 7888888765333222 111111000 0001111122 2333344333333
Q ss_pred CCC-ccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCc
Q 004178 610 LHG-FDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYE 654 (770)
Q Consensus 610 d~s-FDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~e 654 (770)
... ||+|++..++.+-.. ...+...+...|..+ .+++.++-++
T Consensus 159 ~~~~~DlilasDvvy~~~~--~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 159 LPNPFDLILASDVVYEEES--FEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cCCcccEEEEeeeeecCCc--chhHHHHHHHHHhcCCeEEEEEeccc
Confidence 344 999999998855441 123333455566555 6666666543
No 292
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.79 E-value=9.5 Score=41.91 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHh----hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 515 LSKQRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 515 L~~qR~e~Il~~L----~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
....|..++-+.+ ... ...|+-+|||-=.-+..+-.- ...+|+-+|. |+.++.-++.+.... .
T Consensus 73 ~~a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~-Pevi~~K~~~l~e~~---------~ 139 (297)
T COG3315 73 FLAARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDL-PEVIEFKKKLLAERG---------A 139 (297)
T ss_pred hHHHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCC--CCCeEEECCC-cHHHHHHHHHhhhcC---------C
Confidence 3555655554433 333 689999999976655544322 2367888884 667776666664321 1
Q ss_pred CCCccEEEEECCccccCC----CCCCcc-----EEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 591 TDVKSAVLFDGSITVFDS----RLHGFD-----IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 591 ~~~~~Vef~~GDaedlp~----~d~sFD-----lVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
..+.+++++..|+.+-+. ...+|| ++++-+++.+++++....+++.|.....|| .+++..+
T Consensus 140 ~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 140 TPPAHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCCceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 122368899999874332 124455 788999999999999999999999999999 6666654
No 293
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.49 E-value=5.7 Score=41.51 Aligned_cols=109 Identities=22% Similarity=0.248 Sum_probs=72.8
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhc---CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 525 QHIKESCATTLVDFGCGSGSLLDSLLD---YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGtG~ll~~LAk---~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
+.+-..++..|+++|.--|.-+.++|. ..|...+|+|+||+-..++.+.. ..++|.|++|
T Consensus 63 ellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----------------e~p~i~f~eg 125 (237)
T COG3510 63 ELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----------------EVPDILFIEG 125 (237)
T ss_pred HHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----------------cCCCeEEEeC
Confidence 344455689999999988877766654 23455799999999877766643 1468999999
Q ss_pred CccccCC-------CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 602 SITVFDS-------RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 602 Daedlp~-------~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
+-.+... ..+.--+.+|...-||+. ..+..+ +....+|.-| ++++..-+
T Consensus 126 ss~dpai~eqi~~~~~~y~kIfvilDsdHs~~-hvLAel-~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 126 SSTDPAIAEQIRRLKNEYPKIFVILDSDHSME-HVLAEL-KLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEecCCchHH-HHHHHH-HHhhhHhhcCceEEEeccc
Confidence 9765432 112235566777777775 444443 3467788889 77775544
No 294
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=81.98 E-value=3.4 Score=46.89 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=40.7
Q ss_pred HHHHHHHHh-hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 519 RVEYALQHI-KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 519 R~e~Il~~L-~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
|+..++..+ .-.+.+.|+|+|.|.|+++..|.-..+ ..|+|||-|+...++|++
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 333333333 334668999999999999998875543 899999999888888764
No 295
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=80.70 E-value=2.4 Score=34.85 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred hhhHHHhhhhhcccCcceeecccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeeEEEEeeccCCccccc
Q 004178 213 PREMLFMFCRQHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILEC 292 (770)
Q Consensus 213 p~~~l~~fc~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 292 (770)
|+.+|..+|+++++.-|..... ..+ +......|.|.|+|. + ..+-
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-----------------------------~~~-~~~~~~~f~~~~~i~--~--~~~~- 45 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-----------------------------EEG-PSHHRPRFICTVYID--G--KEYG- 45 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-----------------------------EES-SSSSSEEEEEEEEET--T--EEEE-
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-----------------------------EeC-CCCCCceEEEEEEEC--C--EEEe-
Confidence 7889999999999443333222 011 111112599999882 2 1111
Q ss_pred CchhhhhhhhhhHhhhhhHHHHHH
Q 004178 293 SPKEFYKKQNESIENASLKVLSWL 316 (770)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~l~~~ 316 (770)
...-...-+|=|.||.++|..|
T Consensus 46 --~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 46 --EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp --EEEESSHHHHHHHHHHHHHHHH
T ss_pred --EeccCCHHHHHHHHHHHHHHhC
Confidence 1222355789999999999876
No 296
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=78.72 E-value=1.4 Score=49.39 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=59.8
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHH-------HHHHhhhhhcccccCCCCCCCccEE
Q 004178 525 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA-------AKIIHSKLSKKLDAAVPCTDVKSAV 597 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~A-------rkrL~~~~s~~~~~l~pr~~~~~Ve 597 (770)
+.....+++-|.|-=-|||.++...+..| +.|+|.||+-.++... +.+++++. ....-+.
T Consensus 202 N~Amv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg----------~~~~fld 268 (421)
T KOG2671|consen 202 NQAMVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYG----------SSSQFLD 268 (421)
T ss_pred hhhccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhC----------Ccchhhh
Confidence 34455678999999999999999888888 8999999999888732 22333321 1223467
Q ss_pred EEECCccccCCC-CCCccEEEe
Q 004178 598 LFDGSITVFDSR-LHGFDIGTC 618 (770)
Q Consensus 598 f~~GDaedlp~~-d~sFDlVVc 618 (770)
++.+|....+.. ...||+|+|
T Consensus 269 vl~~D~sn~~~rsn~~fDaIvc 290 (421)
T KOG2671|consen 269 VLTADFSNPPLRSNLKFDAIVC 290 (421)
T ss_pred eeeecccCcchhhcceeeEEEe
Confidence 788888776654 357999999
No 297
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.48 E-value=5.3 Score=36.36 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=58.6
Q ss_pred CccchHHHHHhcCCCCC-ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC----CCCCcc
Q 004178 540 CGSGSLLDSLLDYPTAL-EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS----RLHGFD 614 (770)
Q Consensus 540 CGtG~ll~~LAk~ggp~-~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~----~d~sFD 614 (770)
||.|.++..+++..... .+|+.+|.+++.++.+++. .+.++.||..+... .....|
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------------~~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------------GVEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------------TSEEEES-TTSHHHHHHTTGGCES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------------ccccccccchhhhHHhhcCccccC
Confidence 44455555554322111 4899999999998887651 26788899876432 235677
Q ss_pred EEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhh
Q 004178 615 IGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQK 661 (770)
Q Consensus 615 lVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~ 661 (770)
.|++..- ++......-...+-+.|. .+++...+.+....+..
T Consensus 65 ~vv~~~~-----~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 65 AVVILTD-----DDEENLLIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp EEEEESS-----SHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred EEEEccC-----CHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 7766432 233333333456666776 77777777666666553
No 298
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=78.40 E-value=5.2 Score=46.78 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCC---CceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCc-c
Q 004178 520 VEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTA---LEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVK-S 595 (770)
Q Consensus 520 ~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp---~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~-~ 595 (770)
.+.+++.+.+....+|.|-.||+|.++...++..+. ...++|.|+++.....|+.++- + .+.. .
T Consensus 175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~--l----------hgi~~~ 242 (489)
T COG0286 175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI--L----------HGIEGD 242 (489)
T ss_pred HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH--H----------hCCCcc
Confidence 345666666656679999999999988766554321 2569999999999999987652 1 1111 3
Q ss_pred EEEEECCccccCC-----CCCCccEEEec
Q 004178 596 AVLFDGSITVFDS-----RLHGFDIGTCL 619 (770)
Q Consensus 596 Vef~~GDaedlp~-----~d~sFDlVVc~ 619 (770)
+....+|-..-|. ....||+|++.
T Consensus 243 ~~i~~~dtl~~~~~~~~~~~~~~D~viaN 271 (489)
T COG0286 243 ANIRHGDTLSNPKHDDKDDKGKFDFVIAN 271 (489)
T ss_pred ccccccccccCCcccccCCccceeEEEeC
Confidence 4445555332221 23669988874
No 299
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=77.83 E-value=2.2 Score=44.25 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCCceeEEEEEEEEEecccccccceecc---cceeeeccCCcccccceeeeeeccccccceecccCCchhhhh
Q 004178 400 SNGCLSFISYSVSLVIEGETMKELLESR---EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 469 (770)
Q Consensus 400 ~~g~~~~i~y~~~l~~~~~~~~~l~e~~---~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elfl 469 (770)
.+|++|.|.|++.+. +| .++++. .-+.|-+|.+.+.+-||..+.-|.+|+...|. |+|.+.|-
T Consensus 4 ~~~~vV~l~Y~l~~~-dG----~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~--l~peeAyG 69 (196)
T PRK10737 4 AKDLVVSLAYQVRTE-DG----VLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA--VGANDAYG 69 (196)
T ss_pred CCCCEEEEEEEEEeC-CC----CEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEE--EChHHhcC
Confidence 689999999999994 33 477744 56789999999999999999999999999988 87777553
No 300
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=77.51 E-value=26 Score=37.73 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=63.3
Q ss_pred hhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccc
Q 004178 506 MEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKL 584 (770)
Q Consensus 506 ~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~ 584 (770)
+++.+-.+.-.-.|..++.+. ....+++||=+|=+.-. ++..|... ..+|+-+||++.+++.-++....
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~-gdL~gk~il~lGDDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~------ 89 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER-GDLEGKRILFLGDDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEE------ 89 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT-T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHH------
T ss_pred cccccccHHHHHHHHHHHHhc-CcccCCEEEEEcCCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHH------
Confidence 444444555566677776654 33468999999954433 22233233 38999999999999988765532
Q ss_pred ccCCCCCCCccEEEEECCccc-cCCC-CCCccEEEec--cccccCChhHHHHHHHHHHHcccC
Q 004178 585 DAAVPCTDVKSAVLFDGSITV-FDSR-LHGFDIGTCL--EVIEHMEEDEASQFGNIVLSSFRP 643 (770)
Q Consensus 585 ~~l~pr~~~~~Vef~~GDaed-lp~~-d~sFDlVVc~--eVLEHL~~d~~~~fleeI~rvLKP 643 (770)
.+. +|+.++.|+.+ +|.. .+.||++++- +.+ +-...|+......||.
T Consensus 90 ------~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~-----~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 90 ------EGL-PIEAVHYDLRDPLPEELRGKFDVFFTDPPYTP-----EGLKLFLSRGIEALKG 140 (243)
T ss_dssp ------HT---EEEE---TTS---TTTSS-BSEEEE---SSH-----HHHHHHHHHHHHTB-S
T ss_pred ------cCC-ceEEEEecccccCCHHHhcCCCEEEeCCCCCH-----HHHHHHHHHHHHHhCC
Confidence 133 49999999877 3433 4789999773 344 3345777778888885
No 301
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.94 E-value=8.6 Score=42.26 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=46.5
Q ss_pred EEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC-CCCc
Q 004178 535 LVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR-LHGF 613 (770)
Q Consensus 535 VLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~-d~sF 613 (770)
|+|+-||-|.+..-|.+.+ ..-+.++|+++.+++.-+.+.. . .+..+|+.++... ...+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----------------~-~~~~~Di~~~~~~~~~~~ 60 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----------------N-KVPFGDITKISPSDIPDF 60 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----------------C-CCCccChhhhhhhhCCCc
Confidence 5899999999998887765 3456789999999888776541 1 3445777766532 3458
Q ss_pred cEEEec
Q 004178 614 DIGTCL 619 (770)
Q Consensus 614 DlVVc~ 619 (770)
|+++..
T Consensus 61 dvl~gg 66 (315)
T TIGR00675 61 DILLGG 66 (315)
T ss_pred CEEEec
Confidence 888763
No 302
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.87 E-value=20 Score=41.03 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=49.7
Q ss_pred CCEEEEEcCccchHHHHHh--------cC------CCCCceEEEEeCChHHHHHHHHHHhhhhhc---ccccCCCCCCCc
Q 004178 532 ATTLVDFGCGSGSLLDSLL--------DY------PTALEKIVGVDISQKSLSRAAKIIHSKLSK---KLDAAVPCTDVK 594 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LA--------k~------ggp~~~VvGVDISeemLe~ArkrL~~~~s~---~~~~l~pr~~~~ 594 (770)
.-+|+|+|||+|.++..+. ++ ..|..+|..-|.-..=-...-+.+...... ..+++. ..+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~-~~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLA-ASGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhcc-ccCCC
Confidence 5689999999997765442 11 123467777776542111111112110000 000000 00001
Q ss_pred --cEEEEECCccccCCCCCCccEEEeccccccCC
Q 004178 595 --SAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 595 --~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~ 626 (770)
-+.-+-|+...--++.++.+++++..++||+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence 12233356666566789999999999999987
No 303
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=75.80 E-value=22 Score=39.45 Aligned_cols=125 Identities=20% Similarity=0.150 Sum_probs=71.8
Q ss_pred hhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 004178 505 RMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 583 (770)
Q Consensus 505 R~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~ 583 (770)
..+...+..|+.-.-....... ....+.+|+=+|||. |.++..+++.. ...+|+.+|.+++-++.|++...
T Consensus 143 ~~~~aal~epla~~~~~~a~~~-~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g------ 214 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERA-AVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGG------ 214 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhcc-CCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCC------
Confidence 4455666667666432222222 222344999999996 77767777765 35899999999999999987431
Q ss_pred cccCCCCCCCccEEEEEC-Ccc-c-cCCC-CCCccEEEeccccccCChhHHHHHHHHHHHcccCC--EEEEEecCCc
Q 004178 584 LDAAVPCTDVKSAVLFDG-SIT-V-FDSR-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPNYE 654 (770)
Q Consensus 584 ~~~l~pr~~~~~Vef~~G-Dae-d-lp~~-d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG--~LIISTPN~e 654 (770)
...+..... +.. . .... ..++|+|+=.-- . . ..+ ..+.++++|| ++++.++...
T Consensus 215 ---------~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G---~--~--~~~-~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 215 ---------ADVVVNPSEDDAGAEILELTGGRGADVVIEAVG---S--P--PAL-DQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ---------CeEeecCccccHHHHHHHHhCCCCCCEEEECCC---C--H--HHH-HHHHHHhcCCCEEEEEeccCCc
Confidence 111111111 110 0 0111 236998753322 1 1 122 3578899997 6777777544
No 304
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=75.24 E-value=20 Score=42.46 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=35.6
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.++.+|+=+|||. |..+...++..+ .+|+++|.+++-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 4689999999995 667777777654 589999999999998876
No 305
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=74.68 E-value=10 Score=42.65 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=60.4
Q ss_pred hcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC-Cccc
Q 004178 528 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG-SITV 605 (770)
Q Consensus 528 ~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G-Daed 605 (770)
+..++++|+=+|+| -|.++..+++..+ .+|+++|.+++-++.|++.- . -.++.. |...
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lG----------------A--d~~i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLG----------------A--DHVINSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhC----------------C--cEEEEcCCchh
Confidence 45578999999987 5667788888443 89999999999999997721 1 122221 2111
Q ss_pred cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC--EEEEEecC
Q 004178 606 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR--ILIVSTPN 652 (770)
Q Consensus 606 lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG--~LIISTPN 652 (770)
...-...||+|+..-. .+- + +...+.|++| ++++.-|.
T Consensus 223 ~~~~~~~~d~ii~tv~-~~~-------~-~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 223 LEAVKEIADAIIDTVG-PAT-------L-EPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred hHHhHhhCcEEEECCC-hhh-------H-HHHHHHHhcCCEEEEECCCC
Confidence 1111123999877655 322 2 2356688887 55666553
No 306
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=74.20 E-value=17 Score=40.34 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=39.0
Q ss_pred HHhhcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 525 QHIKESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
......++.+||.+|||. |..+..+++..+ ..+|+++|.+++.++.+++
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARS 227 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 334455678999999998 888888888763 2469999999999988876
No 307
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=73.23 E-value=17 Score=39.41 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=74.9
Q ss_pred chHHHHHHHHHH---HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChH----HHHHHHHHHhhhhhcccc
Q 004178 513 PPLSKQRVEYAL---QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQK----SLSRAAKIIHSKLSKKLD 585 (770)
Q Consensus 513 PPL~~qR~e~Il---~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISee----mLe~ArkrL~~~~s~~~~ 585 (770)
.|+..+....|+ +.+-..++.+||=+|.++|.......+..+|..-|++|+.|+. .+..|+++
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------- 204 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------- 204 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----------
Confidence 355544444443 2334457899999999999999999998888999999999873 45555442
Q ss_pred cCCCCCCCccEEEEECCccccCC---CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 586 AAVPCTDVKSAVLFDGSITVFDS---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 586 ~l~pr~~~~~Vef~~GDaedlp~---~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
.||.-+..|+..... .-.-.|+|++-- -++++...+.-+..-.||+| .++|+.-
T Consensus 205 --------tNiiPIiEDArhP~KYRmlVgmVDvIFaDv----aqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 205 --------TNIIPIIEDARHPAKYRMLVGMVDVIFADV----AQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred --------CCceeeeccCCCchheeeeeeeEEEEeccC----CCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 355555556654221 112345553321 12355566666788899998 6666543
No 308
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=72.36 E-value=4.2 Score=40.54 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=52.8
Q ss_pred CCCCceeEEEEEEEEEecccccccceecc----cceeeeccCCcccccceeeeeeccccccceecccCCchhhhh
Q 004178 399 PSNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 469 (770)
Q Consensus 399 ~~~g~~~~i~y~~~l~~~~~~~~~l~e~~----~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elfl 469 (770)
.+.|+.+.+-|++.+. +|+ ++++. .-+.|-+|.|.+.+-++..+..|.+|....|. |||.+.+-
T Consensus 5 i~~~~~V~v~Y~~~~~-dG~----v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~--ipp~~ayG 72 (156)
T PRK15095 5 VQSNSAVLVHFTLKLD-DGS----TAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFS--LEPEAAFG 72 (156)
T ss_pred cCCCCEEEEEEEEEeC-CCC----EEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEE--EChHHhcC
Confidence 4899999999999883 442 56533 45899999999999999999999999999986 88776554
No 309
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=72.16 E-value=27 Score=39.66 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=70.0
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCC---CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcc
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPT---ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSIT 604 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~gg---p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDae 604 (770)
...++++|||+....|.=+..|.+... ....|++=|++..-+..-.+.+... ..+++.+...|+.
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l------------~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL------------PSPNLLVTNHDAS 219 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc------------CCcceeeecccce
Confidence 566899999999999998877766441 1238999999987666665544211 1223333334433
Q ss_pred ccCC---------CCCCccEEEec------cccccCCh---------------hHHHHHHHHHHHcccCC-EEEEEecCC
Q 004178 605 VFDS---------RLHGFDIGTCL------EVIEHMEE---------------DEASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 605 dlp~---------~d~sFDlVVc~------eVLEHL~~---------------d~~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
..+- ....||-|+|- .++.+-+. .-.-.++..-.++||+| .++-+|..-
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred eccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 3222 23469999872 23433321 11123445688999999 777788763
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=71.57 E-value=12 Score=44.14 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=58.2
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCC-CCcc---EEEEECCcc
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCT-DVKS---AVLFDGSIT 604 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~-~~~~---Vef~~GDae 604 (770)
.++.+|+=+|||. |..+..+++..+ ..|+.+|.+++-++.++. +....-.. .+.. +... .+....+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-lGa~~v~v----~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-MGAEFLEL----DFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-cCCeEEec----cccccccccccceeecCHHHH
Confidence 3568999999995 566666665543 679999999998887765 21100000 0000 0000 000000000
Q ss_pred -----ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 605 -----VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 605 -----dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
.++.....+|+|++.-.+.--+. + ..+.+++.+.+|||
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~a-P-~Lit~emv~~MKpG 277 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPA-P-KLITEEMVDSMKAG 277 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCC-C-eeehHHHHhhCCCC
Confidence 01222357999988776655432 1 24556788899999
No 311
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.21 E-value=18 Score=37.87 Aligned_cols=156 Identities=17% Similarity=0.204 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
+....++.+........+++||-+|.= +|.+...++... ++|+-+||.+.|-.. .+
T Consensus 28 I~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~~---~~vtv~Di~p~~r~~--------------------lp 84 (254)
T COG4017 28 IAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSKA---DKVTVVDIHPFMRGF--------------------LP 84 (254)
T ss_pred HHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhccc---ceEEEecCCHHHHhc--------------------CC
Confidence 445566666655556678999999964 787776666544 899999999865322 12
Q ss_pred ccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCc--------hhHHHhhhccc
Q 004178 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE--------YNAILQKSSST 665 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~e--------fN~lf~~~~~~ 665 (770)
++|.|..+ +.+..+.+|+|+-.--|.-+.+ +..+-+.|+++++..|..+ ||.-..+..+
T Consensus 85 ~~v~Fr~~----~~~~~G~~DlivDlTGlGG~~P--------e~L~~fnp~vfiVEdP~gn~~D~~I~eyn~T~eRlea- 151 (254)
T COG4017 85 NNVKFRNL----LKFIRGEVDLIVDLTGLGGIEP--------EFLAKFNPKVFIVEDPKGNVFDVDIYEYNNTYERLEA- 151 (254)
T ss_pred CCccHhhh----cCCCCCceeEEEeccccCCCCH--------HHHhccCCceEEEECCCCCCCccchhhcCCHHHHHHh-
Confidence 35666654 3344578999999888877773 2444678999999998753 3322222210
Q ss_pred cCCCCCchhhhhcccccc-CCCcccccCHHHHHHHHHHHHHHCCc
Q 004178 666 IQEDDPDEKTQLQSCKFR-NHDHKFEWTRDQFNCWATELAARHNY 709 (770)
Q Consensus 666 g~~e~pde~~~~~~~~fR-h~DHkfewTreEF~~Wa~~La~r~GY 709 (770)
. +.. ...+....++. .-.-.+-.|.+.++..+..+-..+|.
T Consensus 152 ~--ee~-~k~~l~~~~~~AKTSGTmTLtv~tir~aa~~le~~~GV 193 (254)
T COG4017 152 F--EEK-AKVGLLKTYRKAKTSGTMTLTVDTIRDAARELESLDGV 193 (254)
T ss_pred h--Hhh-hhhhhhhccccccccceEEEEhHHHHHHHHHHhhhcce
Confidence 0 000 00111111111 11233557888888888777766663
No 312
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=70.03 E-value=8.2 Score=45.26 Aligned_cols=114 Identities=17% Similarity=0.182 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHh----hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC
Q 004178 515 LSKQRVEYALQHI----KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC 590 (770)
Q Consensus 515 L~~qR~e~Il~~L----~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr 590 (770)
....|+......+ ....-..|+|...|.|.|+.+|.+..-=...|+-+ ..+..+...-. |
T Consensus 345 ~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd---------------R 408 (506)
T PF03141_consen 345 HWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD---------------R 408 (506)
T ss_pred HHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh---------------c
Confidence 4555555544333 33345689999999999999998764101122222 12233332221 1
Q ss_pred CCCccEEEEECCc-cccCCCCCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEE
Q 004178 591 TDVKSAVLFDGSI-TVFDSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 591 ~~~~~Vef~~GDa-edlp~~d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LII 648 (770)
+. |-.++ |. +.++.-+..||+|.+.+++.+... -....++-++-|+|+|| .++|
T Consensus 409 GL---IG~yh-DWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 409 GL---IGVYH-DWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred cc---chhcc-chhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 11 11111 22 334544689999999998877652 22334444699999998 6666
No 313
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=68.33 E-value=14 Score=42.39 Aligned_cols=117 Identities=17% Similarity=0.138 Sum_probs=75.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH---hhhhhcccccCCCCCCCccEEEE
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII---HSKLSKKLDAAVPCTDVKSAVLF 599 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL---~~~~s~~~~~l~pr~~~~~Vef~ 599 (770)
+.+.++..+++.-.|+|.|-|.+...++..++ ...-+|+++.+..-+.|..+. ...+..++ .....+++.
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG------k~~~~~~~i 256 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG------KKPNKIETI 256 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhC------CCcCceeec
Confidence 44666777889999999999999998888763 466789998876655554322 22222221 124567888
Q ss_pred ECCccccCCC---CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 600 DGSITVFDSR---LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 600 ~GDaedlp~~---d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
+++....... ....++|+...+. ++++..-.+. +++.-+++|.-||+
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCCcceEec
Confidence 8887654331 2456777777664 3333333444 79999999944443
No 314
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=67.11 E-value=13 Score=41.25 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=71.7
Q ss_pred CEEEEEcCccchHHHHHhcCC-------------------CCCceEEEEeCCh--HHHHHHHHHHhhhhhcccccC----
Q 004178 533 TTLVDFGCGSGSLLDSLLDYP-------------------TALEKIVGVDISQ--KSLSRAAKIIHSKLSKKLDAA---- 587 (770)
Q Consensus 533 ~rVLDIGCGtG~ll~~LAk~g-------------------gp~~~VvGVDISe--emLe~ArkrL~~~~s~~~~~l---- 587 (770)
.+||=||-|.|.-+..|+... .+...|+.|||.+ ..++.-...+.... ..+.+.
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p-~~sk~a~~~~ 166 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPP-PLSKYASAAN 166 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCC-Cccccccccc
Confidence 699999999987665554322 0114899999987 34444433332110 000000
Q ss_pred --CCCCCCccEEEEECCccccCCCC-------CCccEEEeccccccCCh---hHHHHHHHHHHHcccCC--EEEEEecCC
Q 004178 588 --VPCTDVKSAVLFDGSITVFDSRL-------HGFDIGTCLEVIEHMEE---DEASQFGNIVLSSFRPR--ILIVSTPNY 653 (770)
Q Consensus 588 --~pr~~~~~Vef~~GDaedlp~~d-------~sFDlVVc~eVLEHL~~---d~~~~fleeI~rvLKPG--~LIISTPN~ 653 (770)
.......++.|.+.|+..+..++ ...|+|+..+++.-+-. ..-..|+..+-..++|| .+|+..|..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 00123457899999998776532 24788888776643321 22345555799999999 666667763
No 315
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.78 E-value=12 Score=40.16 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=51.2
Q ss_pred CCCEEEEEcCccchHHHHH--hcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 531 CATTLVDFGCGSGSLLDSL--LDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~L--Ak~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
+.-++||||.|.-..--.+ .+++ .+.+|.||++..++.|+..+.... .....+++....-.+--+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYg---wrfvGseid~~sl~sA~~ii~~N~----------~l~~~I~lr~qk~~~~if 144 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYG---WRFVGSEIDSQSLSSAKAIISANP----------GLERAIRLRRQKDSDAIF 144 (292)
T ss_pred CceEEEeeccCcccccccccceeec---ceeecCccCHHHHHHHHHHHHcCc----------chhhheeEEeccCccccc
Confidence 4458899998854332212 2333 789999999999999998775321 112245555433222111
Q ss_pred -----CCCCccEEEeccccccC
Q 004178 609 -----RLHGFDIGTCLEVIEHM 625 (770)
Q Consensus 609 -----~d~sFDlVVc~eVLEHL 625 (770)
..+.||+++|+=-+|--
T Consensus 145 ~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 145 NGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccceeeeEecCCCcchh
Confidence 25679999999887543
No 316
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=14 Score=41.94 Aligned_cols=82 Identities=13% Similarity=0.112 Sum_probs=52.6
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCC---C----CCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEEC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYP---T----ALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDG 601 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~g---g----p~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~G 601 (770)
...+..++++|.|.|.++..+++.. . ...++.-|++|++..+.=++++.... ..+.+. .
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-------------~~~~~~-~ 140 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-------------DLIRWV-E 140 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-------------cchhHH-H
Confidence 3345789999999999988776432 1 13789999999999988887774211 111111 1
Q ss_pred CccccCCCCCCccEEEeccccccCC
Q 004178 602 SITVFDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 602 Daedlp~~d~sFDlVVc~eVLEHL~ 626 (770)
-.+++| ....-+|++++++.-+|
T Consensus 141 ~~e~~p--~~~~~i~~~NElfDAlP 163 (370)
T COG1565 141 WVEDLP--KKFPGIVVSNELFDALP 163 (370)
T ss_pred HHHhcc--ccCceEEEechhhcccc
Confidence 122222 12345677888888887
No 317
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=64.58 E-value=13 Score=39.56 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=49.2
Q ss_pred EEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC-C-
Q 004178 534 TLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL-H- 611 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d-~- 611 (770)
+++|+=||-|.+..-|.+.+ ...|.++|+++.+.+.-+.+. + ....+|+.++.... .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~-----------------~--~~~~~Di~~~~~~~l~~ 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANF-----------------P--EVICGDITEIDPSDLPK 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHH-----------------T--EEEESHGGGCHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhcc-----------------c--ccccccccccccccccc
Confidence 78999999999999888876 467899999999888887755 1 67778888765321 1
Q ss_pred CccEEEec
Q 004178 612 GFDIGTCL 619 (770)
Q Consensus 612 sFDlVVc~ 619 (770)
.+|+++..
T Consensus 61 ~~D~l~gg 68 (335)
T PF00145_consen 61 DVDLLIGG 68 (335)
T ss_dssp T-SEEEEE
T ss_pred cceEEEec
Confidence 59998873
No 318
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=63.45 E-value=41 Score=33.80 Aligned_cols=95 Identities=8% Similarity=0.050 Sum_probs=56.9
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC---
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS--- 608 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~--- 608 (770)
...|+.+|||-=.....+.... +..+++-+|. +++++.-++.+...... ...+.+++.+|+.+...
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~-~~~~~~evD~-p~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~~~~~~~~ 147 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPA-GGVRWFEVDL-PEVIALKRRLLPESGAR---------PPANYRYVPADLRDDSWIDA 147 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTT-TTEEEEEEE--HHHHHHHHHHHHHTHHH---------HHEESSEEES-TTSHHHHHH
T ss_pred CcEEEEcCCCCCchHHHhhccc-cceEEEEeCC-HHHHHHHHHHHHhCccc---------CCcceeEEeccccchhhHHH
Confidence 4499999999888887777653 1377888884 56676666666432111 01245678888875221
Q ss_pred ------CCCCccEEEeccccccCChhHHHHHHHHH
Q 004178 609 ------RLHGFDIGTCLEVIEHMEEDEASQFGNIV 637 (770)
Q Consensus 609 ------~d~sFDlVVc~eVLEHL~~d~~~~fleeI 637 (770)
....--++++-+++.+++++....+++.+
T Consensus 148 L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 148 LPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp HHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred HHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 12344578888899999987777766543
No 319
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.91 E-value=5.6 Score=40.49 Aligned_cols=44 Identities=18% Similarity=0.368 Sum_probs=34.8
Q ss_pred CCCccEEEeccccccCCh----------hHHHHHHHHHHHcccCC-EEEEEecCCc
Q 004178 610 LHGFDIGTCLEVIEHMEE----------DEASQFGNIVLSSFRPR-ILIVSTPNYE 654 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~----------d~~~~fleeI~rvLKPG-~LIISTPN~e 654 (770)
.++||.+.|..+|||... .+...+. .+.++|||| .++++.|-..
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~-~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMA-KIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHH-HHHHhhccCCeEEEEeecCC
Confidence 367999999999999752 2345665 499999999 9999998754
No 320
>PRK10458 DNA cytosine methylase; Provisional
Probab=62.66 E-value=36 Score=39.89 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHhhcC------CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 004178 514 PLSKQRVEYALQHIKES------CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 514 PL~~qR~e~Il~~L~~~------~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL 576 (770)
++....+..+.+.+... ..-+++|+=||.|.+..-+-..+ ..-|.++|+++.+.+.-+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHc
Confidence 44445555555555322 24589999999999998887765 256789999998887766643
No 321
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.93 E-value=49 Score=36.00 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=34.4
Q ss_pred hcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 528 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 528 ~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
...++++||=.||| .|.++..+++..+ ..+|+++|.+++-++.+++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 33467899999987 4666667777653 2479999999999988865
No 322
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=61.27 E-value=88 Score=33.82 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 515 LSKQRVEYALQHIKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 515 L~~qR~e~Il~~L~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
+.....+.+..++.....+++|=+|.= +|.+....+... ++|+-+||.|.+.....
T Consensus 25 I~ekKa~ai~~~le~~~~k~~lI~G~YltG~~iA~~L~~~---~eV~lvDI~p~lk~ll~-------------------- 81 (252)
T PF06690_consen 25 IAEKKANAIKYWLEGEEFKQALIFGAYLTGNFIASALSKK---CEVTLVDIHPHLKELLN-------------------- 81 (252)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEEEeehHHHHHHhccC---ceEEEEeCcHHHHHHhc--------------------
Confidence 556667778888877777799999942 455544444432 59999999997765542
Q ss_pred ccEEEEECCccccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchh
Q 004178 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYN 656 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN 656 (770)
.++.|... .......+|+|+-.--|.-+.++ ..+-+.|+++++..|..+++
T Consensus 82 ~~i~F~~~----~~~~~~~~DlIID~TGlGGv~~~--------~Ls~~~p~v~IVEdP~~~~s 132 (252)
T PF06690_consen 82 ENIKFMEF----RNGLEGNPDLIIDTTGLGGVDPD--------FLSKFNPKVFIVEDPKGDGS 132 (252)
T ss_pred CCCceeec----cCCCCCCCCEEEECCCCCCCCHH--------HHhccCCCEEEEECCCccCc
Confidence 35666622 12223589999988888777633 34467799999999998873
No 323
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.24 E-value=86 Score=34.94 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=82.5
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc-CCCCCCCccEEEEECCccccCC
Q 004178 532 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA-AVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~-l~pr~~~~~Vef~~GDaedlp~ 608 (770)
.++|.=||+|. ..++..++..+ .+|+.+|++++.++.+++++.......... +.+.....++++.. ++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG---LDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---
Confidence 46899999994 23455566766 899999999999888776554332211000 00000111233221 2211
Q ss_pred CCCCccEEEeccccccCChh--HHHHHHHHHHHcccCCEEEEEecCCchhHHHhhhccccCCCCCchhhhhccccccCCC
Q 004178 609 RLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRNHD 686 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d--~~~~fleeI~rvLKPG~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh~D 686 (770)
.....|+| +|.++++ ....+..++.+.++|+.++-++-..-.-..+.... ..|+.- -...|-+|-
T Consensus 80 av~~aDlV-----iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~-----~~p~R~---~g~HffnP~ 146 (321)
T PRK07066 80 CVADADFI-----QESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARA-----THPERC---VVGHPFNPV 146 (321)
T ss_pred HhcCCCEE-----EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhc-----CCcccE---EEEecCCcc
Confidence 12455665 4455432 33455567889999995433322221112222110 112111 122344444
Q ss_pred cc--------cccCHHHHHHHHHHHHHHCCcEE
Q 004178 687 HK--------FEWTRDQFNCWATELAARHNYSV 711 (770)
Q Consensus 687 Hk--------fewTreEF~~Wa~~La~r~GY~V 711 (770)
|. ..+|..+..+++..+....|...
T Consensus 147 ~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 147 YLLPLVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 43 23677777778888888877543
No 324
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=60.91 E-value=52 Score=34.98 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHHHHHhhcCCCCEEEEEcCccch--HHHHHh--cCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccE
Q 004178 521 EYALQHIKESCATTLVDFGCGSGS--LLDSLL--DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSA 596 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~--ll~~LA--k~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~V 596 (770)
+||..+..-.+.+.++++.|+-|. .+..|+ .+. ...++++|-.+++.+...++.+... .....+
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~-----------~~~~~v 98 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEA-----------GLSDVV 98 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhc-----------cccccc
Confidence 467666666778899999766442 233333 222 2389999999988877777766321 122357
Q ss_pred EEEECCc-cccCCCCCCccEEEe
Q 004178 597 VLFDGSI-TVFDSRLHGFDIGTC 618 (770)
Q Consensus 597 ef~~GDa-edlp~~d~sFDlVVc 618 (770)
+|+.|+. +++-....+.|+++.
T Consensus 99 Efvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 99 EFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred eEEecCCHHHHHhhccCCCEEEE
Confidence 9999884 444445577888754
No 325
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=60.50 E-value=16 Score=42.70 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=64.2
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCC-CCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYP-TALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~g-gp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...++.+.|+|.|.|.-...+...- .....++.||.+..|+......+... .+..+. ...++.++..- +|
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~-~~~g~~-----~v~~~~~~r~~---~p 268 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDG-SHIGEP-----IVRKLVFHRQR---LP 268 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcCh-hhcCch-----hccccchhccc---CC
Confidence 3457788899888665444332221 12467999999999999988766320 010000 01111222211 22
Q ss_pred C-CCCCccEEEeccccccCChhH--HHHHHHHHHHcccCC-EEEE
Q 004178 608 S-RLHGFDIGTCLEVIEHMEEDE--ASQFGNIVLSSFRPR-ILIV 648 (770)
Q Consensus 608 ~-~d~sFDlVVc~eVLEHL~~d~--~~~fleeI~rvLKPG-~LII 648 (770)
. ....||+|+|.+.++|+.... .....+..++..++| .+++
T Consensus 269 i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 269 IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 2 235699999999999987432 233344456778888 4444
No 326
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.22 E-value=12 Score=42.66 Aligned_cols=60 Identities=12% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCccEEEEECCccccCC--CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEec
Q 004178 592 DVKSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 592 ~~~~Vef~~GDaedlp~--~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+..+++++++++.+.-. +++++|.++.+...++|+++......+.+.+.++|| .++.-+-
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 45789999999987533 468999999999999999999999999999999999 7766443
No 327
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=58.28 E-value=7.5 Score=42.53 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHH
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLS 570 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe 570 (770)
..+++|||+|||.|-........+. ..+...|++.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhee
Confidence 3589999999999998887766653 78888898887773
No 328
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=58.07 E-value=34 Score=38.15 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=44.8
Q ss_pred CCCCEEEEEcCccchHHHHHhc---------------CCCCCceEEEEeCChH-HHHHHHHHHhhhhhcccccCCCCCCC
Q 004178 530 SCATTLVDFGCGSGSLLDSLLD---------------YPTALEKIVGVDISQK-SLSRAAKIIHSKLSKKLDAAVPCTDV 593 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk---------------~ggp~~~VvGVDISee-mLe~ArkrL~~~~s~~~~~l~pr~~~ 593 (770)
.+.-+|+|+||.+|..+..+.. ...+..+|+--|.-.. .-...+ .+........ ....
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~-~l~~~~~~~~-----~~~~ 88 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFK-SLPSFQQSLK-----KFRN 88 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHH-CHHHHHHHHH-----HTTS
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHH-hChhhhhccC-----CCce
Confidence 3456899999999998865531 1123458888886442 222221 1211100000 0011
Q ss_pred ccEEEEECCccccCCCCCCccEEEeccccccCC
Q 004178 594 KSAVLFDGSITVFDSRLHGFDIGTCLEVIEHME 626 (770)
Q Consensus 594 ~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL~ 626 (770)
--+.-+-|+...--++.++.|++++..++||+.
T Consensus 89 ~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 89 YFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp EEEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred EEEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 123445677777667789999999999999976
No 329
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.19 E-value=25 Score=38.13 Aligned_cols=106 Identities=8% Similarity=0.074 Sum_probs=58.8
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCC-----CCCccEEEEECCccc
Q 004178 533 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPC-----TDVKSAVLFDGSITV 605 (770)
Q Consensus 533 ~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr-----~~~~~Vef~~GDaed 605 (770)
.+|-=||+|. +.++..++..+ .+|+.+|.+++.++.+.+++............-. ....++++ ..|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG---VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH
Confidence 4788899995 33555666766 8999999999999998877665443211000000 00012222 223322
Q ss_pred cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcc-cCCEEEEE
Q 004178 606 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSF-RPRILIVS 649 (770)
Q Consensus 606 lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvL-KPG~LIIS 649 (770)
....|+|+-. +.|-+. ....+...+-+++ +|+.++.+
T Consensus 82 ----~~~~d~ViEa-v~E~~~--~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 ----FADRQLVIEA-VVEDEA--VKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ----hCCCCEEEEe-cccCHH--HHHHHHHHHHHhhCCCCcEEEE
Confidence 2456776433 333332 2344555677888 78855544
No 330
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=55.80 E-value=57 Score=34.58 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=35.0
Q ss_pred hcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 528 KESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 528 ~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
....+.+||..|+| .|..+..+++..+ .+|++++.+++..+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH
Confidence 34567899999987 4788888887654 679999999998887754
No 331
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.74 E-value=15 Score=35.48 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 530 SCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
....+|+++|-|-=. .+..|++++ ..|+++||.+. .| ...+.++..|+.+...
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a--------------------~~g~~~v~DDitnP~~ 65 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TA--------------------PEGLRFVVDDITNPNI 65 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cC--------------------cccceEEEccCCCccH
Confidence 345699999988543 456777877 89999999886 22 1367888989877554
Q ss_pred C-CCCccEEEec
Q 004178 609 R-LHGFDIGTCL 619 (770)
Q Consensus 609 ~-d~sFDlVVc~ 619 (770)
. -.+.|+|.+.
T Consensus 66 ~iY~~A~lIYSi 77 (129)
T COG1255 66 SIYEGADLIYSI 77 (129)
T ss_pred HHhhCccceeec
Confidence 3 2456777554
No 332
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.40 E-value=99 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=31.6
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 533 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 533 ~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
.+|.=||+|.- .++..+++.+ .+|+.+|++++.++.+++++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 57888999853 3445566665 789999999999988876643
No 333
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=54.07 E-value=82 Score=33.76 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=51.3
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCC
Q 004178 534 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 611 (770)
Q Consensus 534 rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~ 611 (770)
+|.=||+|. |.++..|.+.+ .+|+++|.+++.++.+.+. .. +.....+.+ ...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~---------------g~---~~~~~~~~~----~~~ 56 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIER---------------GL---VDEASTDLS----LLK 56 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHC---------------CC---cccccCCHh----Hhc
Confidence 566788885 55677777765 7899999999888777541 00 111111111 124
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII 648 (770)
..|+|+..- +.+....+.+.+...++|+.++.
T Consensus 57 ~aDlVilav-----p~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILAL-----PIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEcC-----CHHHHHHHHHHHHHhCCCCcEEE
Confidence 578876543 33444455566777888885444
No 334
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=54.03 E-value=2.5e+02 Score=28.37 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=80.4
Q ss_pred EEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--C---CCCCCccEEEEECCcccc
Q 004178 534 TLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--V---PCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 534 rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l--~---pr~~~~~Vef~~GDaedl 606 (770)
+|.=+|+|.- .++..++..+ .+|+-+|.+++.++.+++++........+.. . ......++.+ ..|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~ 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEA 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGG
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHH
Confidence 4667888853 2445556666 8999999999999999887765332210000 0 0001224443 3354433
Q ss_pred CCCCCCccEEEeccccccCCh--hHHHHHHHHHHHcccCC-EEEEEecCCchhHHHhhhccccCCCCCchhhhhcccccc
Q 004178 607 DSRLHGFDIGTCLEVIEHMEE--DEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 683 (770)
Q Consensus 607 p~~d~sFDlVVc~eVLEHL~~--d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fR 683 (770)
.+.|+| +|-+++ +....+.+++.+++.|+ .+.-.|....-..+.... ..|+.-. ...|-
T Consensus 77 ----~~adlV-----iEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~------~~p~R~i---g~Hf~ 138 (180)
T PF02737_consen 77 ----VDADLV-----IEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAAL------SRPERFI---GMHFF 138 (180)
T ss_dssp ----CTESEE-----EE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTS------STGGGEE---EEEE-
T ss_pred ----hhhhee-----hhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhcc------CcCceEE---EEecc
Confidence 255665 444442 23455666788899898 544444444333333322 1122111 23344
Q ss_pred CCCcc--------cccCHHHHHHHHHHHHHHCCcEEE
Q 004178 684 NHDHK--------FEWTRDQFNCWATELAARHNYSVE 712 (770)
Q Consensus 684 h~DHk--------fewTreEF~~Wa~~La~r~GY~VE 712 (770)
+|-|. ...|..+..+++..++.+.|....
T Consensus 139 ~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 139 NPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred cccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45442 447888888889899888876553
No 335
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.82 E-value=45 Score=40.24 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=63.1
Q ss_pred CCCEEEEEcCccchHHHHHhcCC------CC-----CceEEEEeCCh---HHHHHHHHHHh---hhhhcccc-cCCCCC-
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYP------TA-----LEKIVGVDISQ---KSLSRAAKIIH---SKLSKKLD-AAVPCT- 591 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~g------gp-----~~~VvGVDISe---emLe~ArkrL~---~~~s~~~~-~l~pr~- 591 (770)
+.-+|+|+|-|+|.......+.. .+ .-+++++|..+ +-+..+.+... .....+.+ +.....
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999999765544211 11 35899999643 33333322100 00000000 000001
Q ss_pred --------CCccEEEEECCccccCCC-CCCccEEEeccccccCChhHH-HHHHHHHHHcccCC-EEEEEec
Q 004178 592 --------DVKSAVLFDGSITVFDSR-LHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 592 --------~~~~Vef~~GDaedlp~~-d~sFDlVVc~eVLEHL~~d~~-~~fleeI~rvLKPG-~LIISTP 651 (770)
+.-+++++.||+.+.-.. ...||+++.-..--.-.++-+ ..+++.++++++|| .+.-.|.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 112567888998764332 256999976543221111211 35566799999999 5554443
No 336
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.50 E-value=18 Score=38.91 Aligned_cols=94 Identities=21% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCEEEEEcCccchHHHHHhcCCC-----CC---ceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCc
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPT-----AL---EKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSI 603 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~gg-----p~---~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDa 603 (770)
..+|+|+....|.+...|.+... .. .++++||+-+ -...+.|.-+++|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------------------MaPI~GV~qlq~DI 98 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------------------MAPIEGVIQLQGDI 98 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------------------CCccCceEEeeccc
Confidence 57899999999999988875421 11 2399999643 12345788889998
Q ss_pred cccC--------CCCCCccEEEeccc-----cccCChhHH----HHHHHHHHHcccCCEEEE
Q 004178 604 TVFD--------SRLHGFDIGTCLEV-----IEHMEEDEA----SQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 604 edlp--------~~d~sFDlVVc~eV-----LEHL~~d~~----~~fleeI~rvLKPG~LII 648 (770)
+... +.....|+|+|-++ +|-+++-.. ..-+.-...+||||.-++
T Consensus 99 T~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 99 TSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 8653 23457999999654 555552111 112223457899994444
No 337
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=51.89 E-value=88 Score=33.43 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=80.0
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC-CCCC----CCccEEEEECCccc
Q 004178 533 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA-VPCT----DVKSAVLFDGSITV 605 (770)
Q Consensus 533 ~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l-~pr~----~~~~Vef~~GDaed 605 (770)
.+|.=||+|. +.++..+++.+ .+|+++|++++.++.+++++.+......+.. .... ...++.+ ..|...
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH
Confidence 4678889984 45666677766 6899999999999877655433321110000 0000 0012222 223221
Q ss_pred cCCCCCCccEEEeccccccCChh--HHHHHHHHHHHcccCCEEEEE-ecCCchhHHHhhhccccCCCCCchhhhhccccc
Q 004178 606 FDSRLHGFDIGTCLEVIEHMEED--EASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 682 (770)
Q Consensus 606 lp~~d~sFDlVVc~eVLEHL~~d--~~~~fleeI~rvLKPG~LIIS-TPN~efN~lf~~~~~~g~~e~pde~~~~~~~~f 682 (770)
....|+|+- -++++ ....+.+.+.+.++|+.++++ |.......+..... .|.... ...+
T Consensus 80 ----~~~aDlVi~-----av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~------~~~r~i---g~h~ 141 (282)
T PRK05808 80 ----LKDADLVIE-----AATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATK------RPDKVI---GMHF 141 (282)
T ss_pred ----hccCCeeee-----cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhC------CCcceE---Eeec
Confidence 245677643 33322 224566678889999955444 43333333322220 011011 0111
Q ss_pred cCCCcc--------cccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 683 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 683 Rh~DHk--------fewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
.+|-|. -..|..+..+.+..+....|..+...
T Consensus 142 ~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~ 181 (282)
T PRK05808 142 FNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181 (282)
T ss_pred cCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe
Confidence 122111 12355566666777888888877654
No 338
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=51.48 E-value=58 Score=35.35 Aligned_cols=92 Identities=12% Similarity=0.116 Sum_probs=53.2
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCC
Q 004178 534 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 611 (770)
Q Consensus 534 rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~ 611 (770)
+|-=||+|. +.++..|++.+ .+|++.|.+++.++.+.+. + +.. ..+..++.....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~----------------g---~~~-~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKED----------------R---TTG-VANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHc----------------C---Ccc-cCCHHHHHhhcC
Confidence 466688886 33556666765 7899999999877666441 0 000 012222221123
Q ss_pred CccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCC
Q 004178 612 GFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNY 653 (770)
Q Consensus 612 sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~ 653 (770)
..|+|+.. ++++....+.+.+...|++|.++|...+.
T Consensus 59 ~~dvIi~~-----vp~~~~~~v~~~l~~~l~~g~ivid~st~ 95 (298)
T TIGR00872 59 APRVVWVM-----VPHGIVDAVLEELAPTLEKGDIVIDGGNS 95 (298)
T ss_pred CCCEEEEE-----cCchHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 45887664 33334445556788889999555655443
No 339
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=51.46 E-value=72 Score=34.82 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeC---ChHHHHHHHH
Q 004178 529 ESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDI---SQKSLSRAAK 574 (770)
Q Consensus 529 ~~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDI---SeemLe~Ark 574 (770)
...+.+||=+|+|. |.++..+++..+ .+|++++. +++-++.+++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH
Confidence 34678999999974 667777777664 58999986 5666666654
No 340
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=50.58 E-value=34 Score=33.45 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=47.3
Q ss_pred CCCCEEEEEcCccch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 530 SCATTLVDFGCGSGS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
....+|+++|-|.=. .+..|.+.+ ..|+++|+.+. .|. ..+.++..|+.+...
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~--------------------~g~~~v~DDif~P~l 65 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP--------------------EGVNFVVDDIFNPNL 65 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S---------------------------STTEE---SSS--H
T ss_pred CCCCcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc--------------------cCcceeeecccCCCH
Confidence 345699999999654 566677776 89999999986 111 256788888877554
Q ss_pred C-CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCc
Q 004178 609 R-LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 654 (770)
Q Consensus 609 ~-d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~e 654 (770)
. -.+.|+|.+.---.-|. ..+.+ +++.+.- -++|.+-..+
T Consensus 66 ~iY~~a~lIYSiRPP~El~----~~il~-lA~~v~a-dlii~pL~~e 106 (127)
T PF03686_consen 66 EIYEGADLIYSIRPPPELQ----PPILE-LAKKVGA-DLIIRPLGGE 106 (127)
T ss_dssp HHHTTEEEEEEES--TTSH----HHHHH-HHHHHT--EEEEE-BTTB
T ss_pred HHhcCCcEEEEeCCChHHh----HHHHH-HHHHhCC-CEEEECCCCC
Confidence 3 24788888776544333 22222 3333322 5666655544
No 341
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=46.48 E-value=28 Score=36.38 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=53.2
Q ss_pred CCccCCCCceeEEEEEEEEEecccccccceec----ccceeeeccCCcccccceeeeeeccccccceecccCCchhhhhh
Q 004178 395 SGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELILA 470 (770)
Q Consensus 395 ~~~~~~~g~~~~i~y~~~l~~~~~~~~~l~e~----~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elfla 470 (770)
.|-.|..|+.|-|.|...+. +|. ++++ +.-+.|-+| .+++-++..+..|.+|....|. +||...+-.
T Consensus 113 ~G~~p~~~d~V~v~Y~g~l~-dG~----vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~--IP~~lAYG~ 183 (206)
T PRK11570 113 EGAIPARTDRVRVHYTGKLI-DGT----VFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT--IPHELAYGE 183 (206)
T ss_pred CCCCCCCCCEEEEEEEEEEC-CCC----EEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE--ECHHHcCCC
Confidence 36789999999999999985 543 4442 245677775 5899999999999999999988 888766644
Q ss_pred c
Q 004178 471 A 471 (770)
Q Consensus 471 a 471 (770)
.
T Consensus 184 ~ 184 (206)
T PRK11570 184 R 184 (206)
T ss_pred C
Confidence 3
No 342
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=46.31 E-value=78 Score=33.92 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.++.+||-.|||. |..+..+++..+ ..+|++++.++...+.+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH
Confidence 3688999999886 777777777653 2379999999888876654
No 343
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=45.40 E-value=28 Score=32.96 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=24.6
Q ss_pred EEcCccc--hHHHHHh-cCCCCCceEEEEeCChHHHHHHHHH
Q 004178 537 DFGCGSG--SLLDSLL-DYPTALEKIVGVDISQKSLSRAAKI 575 (770)
Q Consensus 537 DIGCGtG--~ll~~LA-k~ggp~~~VvGVDISeemLe~Arkr 575 (770)
|||++.| .....++ +..++..+|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2223458999999999999888877
No 344
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=44.98 E-value=53 Score=35.32 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=31.8
Q ss_pred CEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 533 TTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 533 ~rVLDIGCGt-G-~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
++|.=||+|. | .++..++..+ .+|+++|.+++.++.+++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~ 48 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDSDPAALSRGLDSIS 48 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHH
Confidence 5788899984 2 3555666665 799999999999987776554
No 345
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=44.83 E-value=22 Score=36.49 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=53.2
Q ss_pred CCCceeEEEEEEEEEecccccccceecc----cceeeeccCCcccccceeeeeeccccccceecccCCchhhhh
Q 004178 400 SNGCLSFISYSVSLVIEGETMKELLESR----EEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELIL 469 (770)
Q Consensus 400 ~~g~~~~i~y~~~l~~~~~~~~~l~e~~----~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elfl 469 (770)
.+|+.+.|.|++.+-- +.++++. ..+.|=+|.|...+-||..+-.|.+|+...+. |+|++.|-
T Consensus 4 ~k~~~V~i~Y~~~~~d-----g~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~--IpPE~AfG 70 (174)
T COG1047 4 EKGDVVSLHYTLKVED-----GEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVE--IPPEDAFG 70 (174)
T ss_pred cCCCEEEEEEEEEecC-----CcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEE--eCchHhcC
Confidence 6799999999999864 3577733 35789999999999999999999999998887 88887653
No 346
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.52 E-value=18 Score=42.58 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=73.2
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc-
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF- 606 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl- 606 (770)
+..++-+|||.=|++|.-++..++..+...+|++-|.++..++..+++.+-. .....++-.++|+..+
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N-----------~v~~ive~~~~DA~~lM 174 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN-----------GVEDIVEPHHSDANVLM 174 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc-----------CchhhcccccchHHHHH
Confidence 3345779999999999988888777656789999999999999888876421 1122355556665432
Q ss_pred ---CCCCCCccEEEeccccccCCh-hHHHHHHHHHHHcccCC-EEEEEec
Q 004178 607 ---DSRLHGFDIGTCLEVIEHMEE-DEASQFGNIVLSSFRPR-ILIVSTP 651 (770)
Q Consensus 607 ---p~~d~sFDlVVc~eVLEHL~~-d~~~~fleeI~rvLKPG-~LIISTP 651 (770)
+.....||+| |+++ .-...|++.+++.++.| .+.+|.-
T Consensus 175 ~~~~~~~~~FDvI-------DLDPyGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 175 YEHPMVAKFFDVI-------DLDPYGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred HhccccccccceE-------ecCCCCCccHHHHHHHHHhhcCCEEEEEec
Confidence 2234789999 7763 12346667788899998 5555443
No 347
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=43.39 E-value=52 Score=36.42 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=50.1
Q ss_pred CCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCC-
Q 004178 532 ATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRL- 610 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d- 610 (770)
..+++|+=||-|.+..-+...+ ..-+.++|+++.+++.-+.+.. ...+...|+.+.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~-----------------~~~~~~~di~~~~~~~~ 63 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFP-----------------HGDIILGDIKELDGEAL 63 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCC-----------------CCceeechHhhcChhhc
Confidence 4589999999999998887776 4678899999999988766441 2455566666544321
Q ss_pred -C-CccEEEec
Q 004178 611 -H-GFDIGTCL 619 (770)
Q Consensus 611 -~-sFDlVVc~ 619 (770)
. .+|+++..
T Consensus 64 ~~~~~DvligG 74 (328)
T COG0270 64 RKSDVDVLIGG 74 (328)
T ss_pred cccCCCEEEeC
Confidence 1 78998874
No 348
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=43.13 E-value=1.2e+02 Score=36.59 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=62.6
Q ss_pred CCEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 532 ATTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 532 ~~rVLDIGCGt-G~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
..+|+=+|||. |... +.|.+.+ .+++.+|.+++.++.+++ .....+.||+.+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~-------------------~g~~v~~GDat~~~~L 457 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDHDPDHIETLRK-------------------FGMKVFYGDATRMDLL 457 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHh-------------------cCCeEEEEeCCCHHHH
Confidence 46888899884 5544 3444444 689999999999988865 135678899887542
Q ss_pred ---CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhH
Q 004178 609 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNA 657 (770)
Q Consensus 609 ---~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~ 657 (770)
.....|++++.- ++++.....-...+.+.|. .+++-+.+.+.-.
T Consensus 458 ~~agi~~A~~vvv~~-----~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~ 505 (621)
T PRK03562 458 ESAGAAKAEVLINAI-----DDPQTSLQLVELVKEHFPHLQIIARARDVDHYI 505 (621)
T ss_pred HhcCCCcCCEEEEEe-----CCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 234677776542 2233333333456667788 6666666654333
No 349
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=42.46 E-value=2.2e+02 Score=35.22 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=83.2
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCC---CCCCccEEEEECCccc
Q 004178 533 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVP---CTDVKSAVLFDGSITV 605 (770)
Q Consensus 533 ~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~--l~p---r~~~~~Vef~~GDaed 605 (770)
.+|.-||.|+- ..+..++..+ .+|+-+|++++.++.+.+++.......... +.+ .....++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 58999999973 3445566666 899999999999998877665433221000 000 0001233322 23222
Q ss_pred cCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE-ecCCchhHHHhhhccccCCCCCchhhhhccccccC
Q 004178 606 FDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFRN 684 (770)
Q Consensus 606 lp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS-TPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fRh 684 (770)
..+.|+|+=. +.|.+. ....+..++-++++|+.++.+ |-...-..+.... ..|+.-. ...|-+
T Consensus 390 ----~~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r~~---g~Hff~ 453 (715)
T PRK11730 390 ----FERVDVVVEA-VVENPK--VKAAVLAEVEQKVREDTILASNTSTISISLLAKAL------KRPENFC---GMHFFN 453 (715)
T ss_pred ----hcCCCEEEec-ccCcHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCCccEE---EEecCC
Confidence 2456765322 333332 344566678899999844443 3332223333322 1122111 122334
Q ss_pred CCcc--------cccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 685 HDHK--------FEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 685 ~DHk--------fewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
|-|. ..-|..+..+.+..++.+.|......
T Consensus 454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe
Confidence 4332 22345555556667777777665443
No 350
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=41.38 E-value=54 Score=37.46 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=37.1
Q ss_pred HHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHH
Q 004178 525 QHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRA 572 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~A 572 (770)
+.++..++++||=|..|-...+.+|.+.+ .+|++||+++..+...
T Consensus 29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P---~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSAGCNALDYLLAGP---KRIHAVDLNPAQNALL 73 (380)
T ss_pred HHhCCCCCCeEEEEccCCchHHHHHhcCC---ceEEEEeCCHHHHHHH
Confidence 56677889999999988888888877766 8999999999765544
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=41.16 E-value=86 Score=34.60 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 529 ESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 529 ~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
..++...+|+|.-.|.++..|.++. ..|++||-.+ |.+ . +. ....|+-...|-..+.+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-ma~---s-L~--------------dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-MAQ---S-LM--------------DTGQVTHLREDGFKFRP 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc---eEEEEeccch-hhh---h-hh--------------cccceeeeeccCccccc
Confidence 3467899999999999999999987 8999999543 322 1 21 22467778888777666
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR 644 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG 644 (770)
.....|-.||-.|= +......-|...|..|
T Consensus 267 ~r~~idWmVCDmVE------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 267 TRSNIDWMVCDMVE------KPARVAALIAKWLVNG 296 (358)
T ss_pred CCCCCceEEeehhc------CcHHHHHHHHHHHHcc
Confidence 55788988886652 2234444567777777
No 352
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=40.62 E-value=32 Score=41.62 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCCh
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQ 566 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISe 566 (770)
.++..|||+||..|.++....+..+...-|+|||+-+
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3577899999999999998887766668899999865
No 353
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.61 E-value=2.2e+02 Score=35.17 Aligned_cols=162 Identities=15% Similarity=0.108 Sum_probs=85.2
Q ss_pred CCEEEEEcCcc--chHHHHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCC---CCCCccEEEEECCc
Q 004178 532 ATTLVDFGCGS--GSLLDSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVP---CTDVKSAVLFDGSI 603 (770)
Q Consensus 532 ~~rVLDIGCGt--G~ll~~LA-k~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~--l~p---r~~~~~Vef~~GDa 603 (770)
-++|.=||+|. ...+..++ ..+ ..|+-+|++++.++.+.+++.......... +.+ .....++++. .|.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~ 384 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAG---LPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY 384 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh
Confidence 46899999997 23444455 545 899999999999999877665443221000 000 0011233333 122
Q ss_pred cccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE-ecCCchhHHHhhhccccCCCCCchhhhhccccc
Q 004178 604 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 682 (770)
Q Consensus 604 edlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS-TPN~efN~lf~~~~~~g~~e~pde~~~~~~~~f 682 (770)
. ...+.|+|+=. +.|-+. ....+..++-++++|+.++.+ |-...-..+..... .|+... ...|
T Consensus 385 ~----~~~~aDlViEa-v~E~~~--~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~------~p~r~i---g~Hf 448 (708)
T PRK11154 385 R----GFKHADVVIEA-VFEDLA--LKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAA------RPEQVI---GLHY 448 (708)
T ss_pred H----HhccCCEEeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcC------cccceE---EEec
Confidence 1 12456765322 333333 344566679999999944443 33323333322221 122111 2223
Q ss_pred cCCCcc--------cccCHHHHHHHHHHHHHHCCcEEEE
Q 004178 683 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEF 713 (770)
Q Consensus 683 Rh~DHk--------fewTreEF~~Wa~~La~r~GY~VEF 713 (770)
-+|-|. ..-|..+....+..+..+.|.....
T Consensus 449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 487 (708)
T PRK11154 449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487 (708)
T ss_pred CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 344442 2356667777777788777765543
No 354
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=40.60 E-value=1.9e+02 Score=35.97 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=87.2
Q ss_pred CCEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCC---CCCCccEEEEECCcc
Q 004178 532 ATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVP---CTDVKSAVLFDGSIT 604 (770)
Q Consensus 532 ~~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~--l~p---r~~~~~Vef~~GDae 604 (770)
-.+|--||+|+- ..+..++..+ .+|+-+|++++.++.+.+++.......... +.+ .....++++. .|..
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 410 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKG---LKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYS 410 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCC---CcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 368999999963 3444556666 899999999999999887765443221000 000 0001123322 1222
Q ss_pred ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE-EecCCchhHHHhhhccccCCCCCchhhhhcccccc
Q 004178 605 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV-STPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 683 (770)
Q Consensus 605 dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII-STPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fR 683 (770)
. ..+.|+|+=. +.|.+. ....+..++-++++|+.++. .|-...-..+.... ..|+.-. ...|-
T Consensus 411 ~----~~~aDlViEA-v~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r~i---g~Hff 474 (737)
T TIGR02441 411 G----FKNADMVIEA-VFEDLS--LKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVS------SRPEKVI---GMHYF 474 (737)
T ss_pred H----hccCCeehhh-ccccHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCccceE---EEecc
Confidence 1 2456665322 334333 34566667999999994444 34433333333322 1122222 22334
Q ss_pred CCCcc--------cccCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 684 NHDHK--------FEWTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 684 h~DHk--------fewTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
+|-|. ...|..+....+..++.+.|-.....
T Consensus 475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v 513 (737)
T TIGR02441 475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV 513 (737)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 44443 23566666767778888888766544
No 355
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.46 E-value=54 Score=35.01 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred cCCCCceeeeecCCCCCCccCCCCceeEEEEEEEEEeccccccccee-ccccee-eeccCCcccccceeeeeeccccccc
Q 004178 379 AIPEHGIYCLSIGGPDSGIYPSNGCLSFISYSVSLVIEGETMKELLE-SREEFE-FEMGTGAVIPQVEVVTAQMSVGQSA 456 (770)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~y~~~l~~~~~~~~~l~e-~~~ef~-fe~g~~~~~~~~~~~~~~~sv~q~~ 456 (770)
..++++++..+|.=-+ |=.|..|..|.|-|.--|--.| +.+.=+ ....|. |-+|.|-|+.-++..|.-|.||.--
T Consensus 116 ~tl~~Gl~y~D~~vG~-G~~a~~G~rV~v~Y~Gkl~~~G--kvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkR 192 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGS-GPSAKKGKRVSVRYIGKLKGNG--KVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKR 192 (226)
T ss_pred eecCCCcEEEEEEecC-CCCCCCCCEEEEEEEEEecCCC--eEeecccCCCCccccccCCCCCCchHHHhhhhhccCCee
Confidence 4678888888775333 9999999999999999987533 333322 566777 9999999999999999999999987
Q ss_pred eecccCCchhhhhhccCCccchhhcccccccccceeeeeccc
Q 004178 457 CFCKELPPQELILAAADDSARTFSLLSSRACCLEYHITLLRV 498 (770)
Q Consensus 457 ~~~~~l~p~elflaa~~~~~~diS~Ls~~~~~Ley~i~lL~v 498 (770)
..+ +||.--+-...... ++ -+-||.|-+.++.+
T Consensus 193 rvi--IPp~lgYg~~g~~~------Ip-pnstL~fdVEL~~v 225 (226)
T KOG0552|consen 193 RVI--IPPELGYGKKGVPE------IP-PNSTLVFDVELLSV 225 (226)
T ss_pred EEE--eCccccccccCcCc------CC-CCCcEEEEEEEEec
Confidence 776 66654443333221 22 33458888888764
No 356
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=40.42 E-value=47 Score=36.19 Aligned_cols=94 Identities=20% Similarity=0.370 Sum_probs=65.1
Q ss_pred CCCCccCCCCceeEEEEEEEEEecccccccceec----ccceeeeccCCcccccceeeeeeccccccceecccCCchhhh
Q 004178 393 PDSGIYPSNGCLSFISYSVSLVIEGETMKELLES----REEFEFEMGTGAVIPQVEVVTAQMSVGQSACFCKELPPQELI 468 (770)
Q Consensus 393 ~~~~~~~~~g~~~~i~y~~~l~~~~~~~~~l~e~----~~ef~fe~g~~~~~~~~~~~~~~~sv~q~~~~~~~l~p~elf 468 (770)
...|-.|..|..+.|.|...++ +|+ ++++ +..+.|.+ +.+++-++..+..|.+|....|. +|+...+
T Consensus 155 ~G~G~~p~~gD~V~V~Y~g~l~-dG~----vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~--IP~~laY 225 (269)
T PRK10902 155 EGTGEAPKDSDTVVVNYKGTLI-DGK----EFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLV--IPPELAY 225 (269)
T ss_pred CCCCCCCCCCCEEEEEEEEEeC-CCC----EeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEE--ECchhhC
Confidence 4457789999999999999984 443 3442 23455555 56999999999999999998877 7765544
Q ss_pred hhccCCccchhhcccccccccceeeeecccCCCh
Q 004178 469 LAAADDSARTFSLLSSRACCLEYHITLLRVTEPP 502 (770)
Q Consensus 469 laa~~~~~~diS~Ls~~~~~Ley~i~lL~v~ep~ 502 (770)
-.... . .++..+- |.|.++++.+..+.
T Consensus 226 G~~g~-~-----gIppns~-LvfeVeLl~V~~~~ 252 (269)
T PRK10902 226 GKAGV-P-----GIPANST-LVFDVELLDVKPAP 252 (269)
T ss_pred CCCCC-C-----CCCCCCc-EEEEEEEEEeccCc
Confidence 43321 1 1233444 88889998876544
No 357
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=40.36 E-value=52 Score=37.14 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=30.2
Q ss_pred CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 531 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 531 ~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.+.+|+=+|+| .|..+...++..+ .+|+.+|.+++-++.+.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH
Confidence 56789999998 4666655555443 589999999877665544
No 358
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=40.00 E-value=55 Score=35.47 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCccchHHHHHhcCCC----CCceEEEEeCCh
Q 004178 530 SCATTLVDFGCGSGSLLDSLLDYPT----ALEKIVGVDISQ 566 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~ll~~LAk~gg----p~~~VvGVDISe 566 (770)
.+...++|+|||.|.++.+++.... +...++.||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3567899999999999999987552 246889999644
No 359
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=39.06 E-value=70 Score=38.27 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCEEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 532 ATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGtG~ll~~LAk~---ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
...|+-+|.|-|-+.....+. ....-++++|+-++.++-..+.+- . +.-..+|+++..|+.....
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n-~-----------~~W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRN-F-----------ECWDNRVTIISSDMRKWNA 435 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhc-h-----------hhhcCeeEEEeccccccCC
Confidence 346788999999887654421 112368999999999887665421 1 1234589999999999886
Q ss_pred CCCCccEEEeccccccCChhHH-HHHHHHHHHcccCCEEEE
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEA-SQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~-~~fleeI~rvLKPG~LII 648 (770)
+....|++|+ +.|.-+.+.++ ..-+.-+.++|||..+.|
T Consensus 436 p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 436 PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 5678998865 33433332222 122234778999984444
No 360
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=38.87 E-value=65 Score=35.97 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=50.9
Q ss_pred ccEEEEECCccccCC--CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 594 KSAVLFDGSITVFDS--RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 594 ~~Vef~~GDaedlp~--~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
.+|.+.++|+.++-. +.+++|.++...+-.+|++.++..+..++.+-+.+| .+|+-|.-
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccc
Confidence 468999999887654 568999999999999999999999999999999999 77776543
No 361
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=38.35 E-value=82 Score=35.21 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=40.3
Q ss_pred HhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 526 HIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 526 ~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
.+....+.+|+-+|.|-...+.+|++.+ .+|..||+++.-|...+-++.
T Consensus 58 am~~g~ghrivtigSGGcn~L~ylsr~P---a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 58 AMQLGIGHRIVTIGSGGCNMLAYLSRAP---ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HHhcCCCcEEEEecCCcchHHHHhhcCC---ceeEEEeCCHHHHHHHHHHHH
Confidence 3445568899999999998999998887 899999999988877665554
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=36.63 E-value=3e+02 Score=34.04 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=84.8
Q ss_pred CCCEEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccC--CCC---CCCccEEEEECCc
Q 004178 531 CATTLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAA--VPC---TDVKSAVLFDGSI 603 (770)
Q Consensus 531 ~~~rVLDIGCGtG~--ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l--~pr---~~~~~Vef~~GDa 603 (770)
+-.+|.-||+|+-. .+..++..+ .+|+-+|++++.++.+.+++........+.. .+. ....+++.. .|.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 387 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKG---TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY 387 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH
Confidence 34689999999633 444566666 8999999999999988876654432210000 000 001123322 122
Q ss_pred cccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE-ecCCchhHHHhhhccccCCCCCchhhhhccccc
Q 004178 604 TVFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS-TPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKF 682 (770)
Q Consensus 604 edlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS-TPN~efN~lf~~~~~~g~~e~pde~~~~~~~~f 682 (770)
. ...+.|+|+=. +.|.+. ....+..++-++++|+.++.+ |-...-..+.... ..|+.-. ...|
T Consensus 388 ~----~~~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~------~~p~r~i---g~Hf 451 (714)
T TIGR02437 388 A----GFDNVDIVVEA-VVENPK--VKAAVLAEVEQHVREDAILASNTSTISISLLAKAL------KRPENFC---GMHF 451 (714)
T ss_pred H----HhcCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc------CCcccEE---EEec
Confidence 1 12466776432 344443 344666679999999944443 3333333333322 1122111 2223
Q ss_pred cCCCcc--------cccCHHHHHHHHHHHHHHCCcEEEE
Q 004178 683 RNHDHK--------FEWTRDQFNCWATELAARHNYSVEF 713 (770)
Q Consensus 683 Rh~DHk--------fewTreEF~~Wa~~La~r~GY~VEF 713 (770)
-+|-|. ..-|..+..+.+..++.+.|-....
T Consensus 452 f~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 490 (714)
T TIGR02437 452 FNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIV 490 (714)
T ss_pred CCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344443 2245556566666777777765544
No 363
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.17 E-value=1.2e+02 Score=30.70 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=47.0
Q ss_pred CCCEEEEEcCccc--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG--~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
+++++|-.|++.| . ++..|++.+ .+|+.+|.++..++.+.+.+.. ...++.+++.|+.+..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 67 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKG---AKLALIDLNQEKLEEAVAECGA-------------LGTEVRGYAANVTDEE 67 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 4678999997443 2 233455555 6899999998776665554421 1236778888876532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+|+....
T Consensus 68 ~~~~~~~~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 68 DVEATFAQIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1246899987643
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=36.00 E-value=1e+02 Score=32.34 Aligned_cols=104 Identities=17% Similarity=0.157 Sum_probs=63.9
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 533 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 533 ~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
++++=+|||. +..+..|.+.+ ..|+.+|.+++.++.+... ......+++|..+...
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~d~~~~~~~~~~-----------------~~~~~~v~gd~t~~~~L~ 60 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDRDEERVEEFLAD-----------------ELDTHVVIGDATDEDVLE 60 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEcCHHHHHHHhhh-----------------hcceEEEEecCCCHHHHH
Confidence 3677889984 34566666776 8999999999988774331 1256788888776432
Q ss_pred --CCCCccEEEeccccccCChhHHHHHHHHHHHc-ccCCEEEEEecCCchhHHHhh
Q 004178 609 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSS-FRPRILIVSTPNYEYNAILQK 661 (770)
Q Consensus 609 --~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rv-LKPG~LIISTPN~efN~lf~~ 661 (770)
....+|++++.-- .+....+.-.+..- +..-.++.-..+..+...+..
T Consensus 61 ~agi~~aD~vva~t~-----~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~ 111 (225)
T COG0569 61 EAGIDDADAVVAATG-----NDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEK 111 (225)
T ss_pred hcCCCcCCEEEEeeC-----CCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHH
Confidence 2467888866321 23333333333322 322277777777766666554
No 365
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=35.20 E-value=25 Score=32.13 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=12.7
Q ss_pred HHHHHhcCCCCCCeEEEE
Q 004178 75 DVIARNLDQTDGNKILVS 92 (770)
Q Consensus 75 ~~~a~~l~~~d~~~~~~s 92 (770)
.-+++|||++||.||++-
T Consensus 66 rqlgeKLGl~dGeQvfLr 83 (87)
T PF09263_consen 66 RQLGEKLGLSDGEQVFLR 83 (87)
T ss_dssp HHHHHHTT--TT-EEEEE
T ss_pred HHHHHhhCCCcCCeEeee
Confidence 358999999999999973
No 366
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=34.95 E-value=97 Score=33.89 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEE-CCccccCC
Q 004178 532 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFD-GSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~-GDaedlp~ 608 (770)
..+|+=+|.|. |.+++.|.+.+ ....++|.|.+...++.+.+ + .+.... .+. ...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g-~~v~i~g~d~~~~~~~~a~~-l------------------gv~d~~~~~~--~~~ 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAG-LVVRIIGRDRSAATLKAALE-L------------------GVIDELTVAG--LAE 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcC-CeEEEEeecCcHHHHHHHhh-c------------------Ccccccccch--hhh
Confidence 35788899883 56677776666 45678999999888887754 1 111110 010 011
Q ss_pred CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEec
Q 004178 609 RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTP 651 (770)
Q Consensus 609 ~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTP 651 (770)
.....|+|+..-=++.. ..+++++...|++|.++..+-
T Consensus 61 ~~~~aD~VivavPi~~~-----~~~l~~l~~~l~~g~iv~Dv~ 98 (279)
T COG0287 61 AAAEADLVIVAVPIEAT-----EEVLKELAPHLKKGAIVTDVG 98 (279)
T ss_pred hcccCCEEEEeccHHHH-----HHHHHHhcccCCCCCEEEecc
Confidence 23567988765544433 355566777888885555433
No 367
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=34.65 E-value=1.3e+02 Score=31.95 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=41.5
Q ss_pred hcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhh
Q 004178 528 KESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHS 578 (770)
Q Consensus 528 ~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~ 578 (770)
....++.|||.=+|+|..+....+.+ ...+|+|++++.++.+.+++..
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 34568999999999999998777766 7899999999999999998864
No 368
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=34.62 E-value=1.6e+02 Score=27.96 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHH
Q 004178 530 SCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKI 575 (770)
Q Consensus 530 ~~~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~Arkr 575 (770)
.++.+|+-+|||. ...+..|++.+ ..+|+.+|.+++..+...+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHHHHHHH
Confidence 4568999999974 23444455542 26899999998776655443
No 369
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=34.36 E-value=1.5e+02 Score=33.48 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=68.5
Q ss_pred CCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 531 CATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.+.+|.-||-| -|..+..++--.+ ..|+-+|+|.+-++.-...+ ..++..+..+...+...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f----------------~~rv~~~~st~~~iee~ 228 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLF----------------GGRVHTLYSTPSNIEEA 228 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhh----------------CceeEEEEcCHHHHHHH
Confidence 35678889988 4677766665443 89999999988776664432 23577777776666666
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEE
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVS 649 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIIS 649 (770)
-...|+|+..-.|---. ......+++.+.+|||.++|.
T Consensus 229 v~~aDlvIgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 229 VKKADLVIGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred hhhccEEEEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 67899998876665444 223555678899999955543
No 370
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=34.27 E-value=1.1e+02 Score=33.45 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCC
Q 004178 531 CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSR 609 (770)
Q Consensus 531 ~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~ 609 (770)
.+++|+=+|+|. |..+...++..+ .+|+.+|.++...+.++. + + .++. +..++...
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~-~---------------G---~~~~--~~~~l~~~ 207 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE-M---------------G---LSPF--HLSELAEE 207 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH-c---------------C---Ceee--cHHHHHHH
Confidence 578999999985 343333333332 799999999876555533 1 1 1111 11222222
Q ss_pred CCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE
Q 004178 610 LHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV 648 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII 648 (770)
...+|+|+..- + . ..+.+.+...++||.+++
T Consensus 208 l~~aDiVI~t~-----p-~--~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 208 VGKIDIIFNTI-----P-A--LVLTKEVLSKMPPEALII 238 (296)
T ss_pred hCCCCEEEECC-----C-h--hhhhHHHHHcCCCCcEEE
Confidence 35799998752 2 1 123345677899994444
No 371
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.53 E-value=72 Score=36.01 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.0
Q ss_pred hcCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 528 KESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 528 ~~~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
+...+.+||-+|+|. |-.+...|+.. ...+|+.+|+++.-++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 445689999999995 66666666654 34799999999999999987
No 372
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=33.50 E-value=68 Score=33.31 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 004178 521 EYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 521 e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL 576 (770)
.+|.+.+......+++|.=||+|..+..+...+ .+|+.-|+++..+...+..+
T Consensus 10 ~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 10 KWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHH
Confidence 466666665468899999999999998776654 79999999998877776444
No 373
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=33.49 E-value=62 Score=29.22 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCCCEEEEEcCccchHHH-HHhcCCCCCceEEEEeCC
Q 004178 517 KQRVEYALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDIS 565 (770)
Q Consensus 517 ~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~-~LAk~ggp~~~VvGVDIS 565 (770)
.+.++++...-....+++||-+||-+|+-+. .++..++.....+||-..
T Consensus 24 ~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 24 ENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 3344555544344567999999999998542 233222234778887654
No 374
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.71 E-value=6.9e+02 Score=27.39 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=24.0
Q ss_pred EEEEEcCcc-chH-HHHHhcCCCCCceEEEEeCChHHHH
Q 004178 534 TLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLS 570 (770)
Q Consensus 534 rVLDIGCGt-G~l-l~~LAk~ggp~~~VvGVDISeemLe 570 (770)
+|.=||+|. |.. +..|+..+ ...+|+.+|++++.++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g-~~~ev~l~D~~~~~~~ 39 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRG-LASEIVLVDINKAKAE 39 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CCCEEEEEECCchhhh
Confidence 577899985 443 33344443 3368999999987665
No 375
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.14 E-value=79 Score=38.02 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=60.7
Q ss_pred CEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 533 TTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 533 ~rVLDIGCGt-G~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
.+|+=+|+|. |... ..|.+.+ .+++.+|.+++.++.+++ .....+.||+.+...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~d~~~v~~~~~-------------------~g~~v~~GDat~~~~L~ 458 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANK---MRITVLERDISAVNLMRK-------------------YGYKVYYGDATQLELLR 458 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCC---CCEEEEECCHHHHHHHHh-------------------CCCeEEEeeCCCHHHHH
Confidence 4677777663 3332 3344444 789999999999988854 135678899877532
Q ss_pred --CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecCCchhHHHh
Q 004178 609 --RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPNYEYNAILQ 660 (770)
Q Consensus 609 --~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN~efN~lf~ 660 (770)
.-...|++++. .+++......-...+.+.|. .++..+.+.+....+.
T Consensus 459 ~agi~~A~~vv~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~ 508 (601)
T PRK03659 459 AAGAEKAEAIVIT-----CNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELL 508 (601)
T ss_pred hcCCccCCEEEEE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence 23467776543 22223222222356667788 7777777665544444
No 376
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=31.69 E-value=1.1e+02 Score=33.08 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=29.1
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 532 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 532 ~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
..+|.=||+|. +.++..|.+.+ ...+|+++|.+++.++.+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g-~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLG-LAGEIVGADRSAETRARARE 49 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcC-CCcEEEEEECCHHHHHHHHh
Confidence 35788999986 33555555544 22489999999987776643
No 377
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=30.93 E-value=4.7e+02 Score=30.75 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=35.0
Q ss_pred CCCEEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHH
Q 004178 531 CATTLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~---ggp~~~VvGVDISeemLe~ArkrL 576 (770)
++..|.|.-||+|.++....+. +.....++|-+....+...|+.++
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 4578999999999998754331 112357999999999999988764
No 378
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.86 E-value=1.7e+02 Score=31.38 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=31.4
Q ss_pred CEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 533 TTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 533 ~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
++|.=||+|. +.++..|++.+ .+|+.+|.+++.++.+.+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G---~~V~~~d~~~~~~~~~~~~~~ 45 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSG---FQTTLVDIKQEQLESAQQEIA 45 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHHH
Confidence 4678889984 33555666666 789999999999998876543
No 379
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=30.85 E-value=2.2e+02 Score=30.38 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=24.5
Q ss_pred EEEEEcCccch--HHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 004178 534 TLVDFGCGSGS--LLDSLLDYPTALEKIVGVDISQKSLSRAA 573 (770)
Q Consensus 534 rVLDIGCGtG~--ll~~LAk~ggp~~~VvGVDISeemLe~Ar 573 (770)
+|+=+|+|... ++..|++.+ .+|+.++. ++.++..+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g---~~V~~~~r-~~~~~~~~ 39 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG---RDVTFLVR-PKRAKALR 39 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC---CceEEEec-HHHHHHHH
Confidence 57888998633 455666665 78999997 65555443
No 380
>PLN02256 arogenate dehydrogenase
Probab=30.42 E-value=2.1e+02 Score=31.60 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=28.5
Q ss_pred HHhhcCCCCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChH
Q 004178 525 QHIKESCATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQK 567 (770)
Q Consensus 525 ~~L~~~~~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISee 567 (770)
+.+......+|.=||+|. |.++..|.+.+ .+|+++|.++.
T Consensus 29 ~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~~ 70 (304)
T PLN02256 29 EELEKSRKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSDY 70 (304)
T ss_pred HhhccCCCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECccH
Confidence 444555677899999984 44666666654 68999998863
No 381
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.42 E-value=1.2e+02 Score=32.61 Aligned_cols=42 Identities=14% Similarity=0.093 Sum_probs=31.4
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHh
Q 004178 533 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIH 577 (770)
Q Consensus 533 ~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~ 577 (770)
.+|.=||+|.- .++..++..+ .+|+.+|.+++.++.+.+++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHH
Confidence 57888999853 3455666666 799999999999888765443
No 382
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=29.85 E-value=3.6e+02 Score=33.28 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=84.4
Q ss_pred CEEEEEcCccchHH--HHHh-cCCCCCceEEEEeCChHHHHHHHHHHhhhhhccccc--CCC---CCCCccEEEEECCcc
Q 004178 533 TTLVDFGCGSGSLL--DSLL-DYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDA--AVP---CTDVKSAVLFDGSIT 604 (770)
Q Consensus 533 ~rVLDIGCGtG~ll--~~LA-k~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~--l~p---r~~~~~Vef~~GDae 604 (770)
++|.-||+|+-.-. ..++ ..+ ..|+-+|++++.++.+.+++.......... +.+ .....++++. .|+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 380 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDYR 380 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CChH
Confidence 57999999964333 3344 345 899999999999998877664433221000 000 0001233332 2322
Q ss_pred ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEE-EecCCchhHHHhhhccccCCCCCchhhhhcccccc
Q 004178 605 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIV-STPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 683 (770)
Q Consensus 605 dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LII-STPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fR 683 (770)
. ..+.|+|+=. +.|.+. ....+..++-++++|+.++. .|-...-..+..... .|+.-. ...|-
T Consensus 381 ~----~~~adlViEa-v~E~l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~------~p~r~~---g~Hff 444 (699)
T TIGR02440 381 G----FKDVDIVIEA-VFEDLA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAAS------RPENVI---GLHYF 444 (699)
T ss_pred H----hccCCEEEEe-ccccHH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcC------CcccEE---EEecC
Confidence 1 2456765432 334332 33455667889999984444 333333333333221 122111 22233
Q ss_pred CCCcc--------cccCHHHHHHHHHHHHHHCCcEEEE
Q 004178 684 NHDHK--------FEWTRDQFNCWATELAARHNYSVEF 713 (770)
Q Consensus 684 h~DHk--------fewTreEF~~Wa~~La~r~GY~VEF 713 (770)
+|-|. ...|..+..+++..++.+.|.....
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~ 482 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 44332 2357777777777888888776644
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=29.60 E-value=4e+02 Score=30.18 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=52.9
Q ss_pred EEEEEcCccchHHHHHhc----CCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 534 TLVDFGCGSGSLLDSLLD----YPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk----~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
+|+=+||| ..+..+++ .+ .+|+.+|.+++.++.+++. ..+.+..||..+...
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g---~~v~vid~~~~~~~~~~~~------------------~~~~~~~gd~~~~~~l 58 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGEN---NDVTVIDTDEERLRRLQDR------------------LDVRTVVGNGSSPDVL 58 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhh------------------cCEEEEEeCCCCHHHH
Confidence 57777774 55544443 34 7899999999887766431 146777888765321
Q ss_pred ---CCCCccEEEeccccccCChhHHHHHHHHHHHcccCC-EEEEEecC
Q 004178 609 ---RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPR-ILIVSTPN 652 (770)
Q Consensus 609 ---~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG-~LIISTPN 652 (770)
....+|.|++.-- ++....+.....+.+.|. .+++.+.+
T Consensus 59 ~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 59 REAGAEDADLLIAVTD-----SDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred HHcCCCcCCEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2356887766432 223333333355556555 55555443
No 384
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=28.65 E-value=1.9e+02 Score=29.24 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=41.8
Q ss_pred hcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCcc--ch-HHHHHhcCCCCCceEEEEeCCh
Q 004178 509 ALFSPPLSKQRVEYALQHIKESCATTLVDFGCGS--GS-LLDSLLDYPTALEKIVGVDISQ 566 (770)
Q Consensus 509 ~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGt--G~-ll~~LAk~ggp~~~VvGVDISe 566 (770)
..|.|.....-++.+.+......+++||=+|.|. |. .+..|.+.+ .+|+.++-+.
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~~ 78 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSKT 78 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECCc
Confidence 4678888887777777666667899999999995 77 566666665 5788888653
No 385
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=28.51 E-value=4.9e+02 Score=27.64 Aligned_cols=46 Identities=17% Similarity=0.071 Sum_probs=35.0
Q ss_pred hhcCCCCEEEEEcCc-cchHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 527 IKESCATTLVDFGCG-SGSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 527 L~~~~~~rVLDIGCG-tG~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.....+.+||-+||| .|..+..+++..+ .+|++++.+++.++.+++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK 204 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 445567899999997 6777777777653 689999999988877743
No 386
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=28.44 E-value=1.2e+02 Score=35.74 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=34.0
Q ss_pred CCEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhh
Q 004178 532 ATTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSK 579 (770)
Q Consensus 532 ~~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~ 579 (770)
..+|-=||+|+- ..+..+++.+ ..|+.+|.+++.++.+.+++...
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~~~e~l~~~~~~i~~~ 51 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAG---HQVLLYDIRAEALARAIAGIEAR 51 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHH
Confidence 467888999953 3455566666 89999999999999887665543
No 387
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.14 E-value=1.4e+02 Score=34.30 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=60.1
Q ss_pred CEEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 533 TTLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 533 ~rVLDIGCGt-G~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
.+||=||||. |... ..|++.+ ..+|+..|-+.+..+.+.... ..+++..+-|+.+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~--d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~ 63 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG--DGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALV 63 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC--CceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHH
Confidence 5789999963 4443 3345554 379999999988887775522 2378888888876543
Q ss_pred -CCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCc
Q 004178 609 -RLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYE 654 (770)
Q Consensus 609 -~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~e 654 (770)
-...+|+|+...--.+-. ..+..+++-|+-++.|-+.+
T Consensus 64 ~li~~~d~VIn~~p~~~~~--------~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 64 ALIKDFDLVINAAPPFVDL--------TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred HHHhcCCEEEEeCCchhhH--------HHHHHHHHhCCCEEEcccCC
Confidence 246679887654332211 23445677785555555543
No 388
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.90 E-value=5.4e+02 Score=29.09 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC-
Q 004178 531 CATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD- 607 (770)
Q Consensus 531 ~~~rVLDIGCGt-G~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp- 607 (770)
...+++=+|+|. |. .+..|.+.+ ..|+.+|.+++.++..++.. ..+.++.||+.+..
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~~~~~~~~~~~~~-----------------~~~~~i~gd~~~~~~ 289 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIERDPERAEELAEEL-----------------PNTLVLHGDGTDQEL 289 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHC-----------------CCCeEEECCCCCHHH
Confidence 467899999963 22 233343444 78999999999888776521 24677888876532
Q ss_pred ---CCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEEEEecCCchhHHHh
Q 004178 608 ---SRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILIVSTPNYEYNAILQ 660 (770)
Q Consensus 608 ---~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LIISTPN~efN~lf~ 660 (770)
.....+|.|++..- ++....+...+.+.+.+..+++.+-+.++...+.
T Consensus 290 L~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 340 (453)
T PRK09496 290 LEEEGIDEADAFIALTN-----DDEANILSSLLAKRLGAKKVIALVNRPAYVDLVE 340 (453)
T ss_pred HHhcCCccCCEEEECCC-----CcHHHHHHHHHHHHhCCCeEEEEECCcchHHHHH
Confidence 12356788765321 1223333333445565555555555544444443
No 389
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=27.49 E-value=3.6e+02 Score=28.56 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.0
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHH
Q 004178 534 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAA 573 (770)
Q Consensus 534 rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~Ar 573 (770)
+|+=+|+|. +.++..|++.+ .+|+.+|-+++.++..+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALN 40 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHH
Confidence 578899985 33555666665 78999998776665544
No 390
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=27.39 E-value=4.2e+02 Score=31.42 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=81.5
Q ss_pred CCEEEEEcCcc-c-hHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCC--C---CCCCccEEEEECCcc
Q 004178 532 ATTLVDFGCGS-G-SLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAV--P---CTDVKSAVLFDGSIT 604 (770)
Q Consensus 532 ~~rVLDIGCGt-G-~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~--p---r~~~~~Vef~~GDae 604 (770)
-++|-=||.|. | ..+..++..+ ..|+.+|.+++.++.+.+++....+....... + .....+++.. .|..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 82 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG---HTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALA 82 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH
Confidence 46788899995 3 3555667776 89999999999999987766544322110000 0 0001123332 2332
Q ss_pred ccCCCCCCccEEEeccccccCChhHHHHHHHHHHHcccCCEEE-EEecCCchhHHHhhhccccCCCCCchhhhhcccccc
Q 004178 605 VFDSRLHGFDIGTCLEVIEHMEEDEASQFGNIVLSSFRPRILI-VSTPNYEYNAILQKSSSTIQEDDPDEKTQLQSCKFR 683 (770)
Q Consensus 605 dlp~~d~sFDlVVc~eVLEHL~~d~~~~fleeI~rvLKPG~LI-ISTPN~efN~lf~~~~~~g~~e~pde~~~~~~~~fR 683 (770)
+ ....|+|+-. +.|-+. ....+..++.++++|+.++ ..|-.-....+..... .|+.-. ...|-
T Consensus 83 ~----~~~aDlViEa-v~E~~~--vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~------~p~r~~---G~hff 146 (507)
T PRK08268 83 D----LADCDLVVEA-IVERLD--VKQALFAQLEAIVSPDCILATNTSSLSITAIAAALK------HPERVA---GLHFF 146 (507)
T ss_pred H----hCCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC------CcccEE---EEeec
Confidence 2 2356776432 333332 2334445577888888444 3344333332222210 111111 12233
Q ss_pred CCCccc---c-----cCHHHHHHHHHHHHHHCCcEEEEE
Q 004178 684 NHDHKF---E-----WTRDQFNCWATELAARHNYSVEFS 714 (770)
Q Consensus 684 h~DHkf---e-----wTreEF~~Wa~~La~r~GY~VEF~ 714 (770)
+|.+.. + .|.++-.+.+..++...|-.+...
T Consensus 147 ~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v 185 (507)
T PRK08268 147 NPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRA 185 (507)
T ss_pred CCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEe
Confidence 333321 1 244555566667777777665544
No 391
>PRK08703 short chain dehydrogenase; Provisional
Probab=27.14 E-value=2.7e+02 Score=28.16 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL 576 (770)
++++||-.||+.|. ++..|++.+ .+|++++-+++.++...+.+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAG---ATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcC---CEEEEEeCChHHHHHHHHHH
Confidence 46799999975443 344555555 78999999987666554444
No 392
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.14 E-value=3.6e+02 Score=29.17 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCEEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 004178 532 ATTLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 532 ~~rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL 576 (770)
-.+|.=||+|. +.++..|++.+ .+|+++|.+++.++.+++.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKG---LQVVLIDVMEGALERARGVI 47 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC---CeEEEEECCHHHHHHHHHHH
Confidence 35788899995 33555666655 78999999999988887643
No 393
>PTZ00117 malate dehydrogenase; Provisional
Probab=27.11 E-value=8.8e+02 Score=26.77 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHH
Q 004178 531 CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLS 570 (770)
Q Consensus 531 ~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe 570 (770)
+..+|.=+|+|. |.....++...+ ..+++-+|++++.++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~-~~~l~L~Di~~~~~~ 43 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKN-LGDVVLYDVIKGVPQ 43 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCC-CCeEEEEECCCccch
Confidence 356899999998 776655544432 257999999987654
No 394
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=26.76 E-value=2.2e+02 Score=33.46 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=29.0
Q ss_pred CEEEEEcCccchHH--HHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 533 TTLVDFGCGSGSLL--DSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 533 ~rVLDIGCGtG~ll--~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.+|.=+|+|-..+. ..|++.+ ...+|+|+|++++-++..++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l~~ 44 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAWNS 44 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHc
Confidence 36778888865543 3456653 23789999999998877654
No 395
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=26.64 E-value=71 Score=35.47 Aligned_cols=100 Identities=14% Similarity=0.110 Sum_probs=63.1
Q ss_pred hhhhhhcCCchHHHHHHHHHHHHhhcCCCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcc
Q 004178 504 DRMEQALFSPPLSKQRVEYALQHIKESCATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKK 583 (770)
Q Consensus 504 eR~e~~~F~PPL~~qR~e~Il~~L~~~~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~ 583 (770)
..|++.+-.|.-.-.|..++-.. ....++.|+-+| -.-..+.+++-.+ -..+|.-+||++..+..-.+...+
T Consensus 126 ~~yDQgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvG-DDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee----- 197 (354)
T COG1568 126 HQYDQGFVTPETTVSRVALMYSR-GDLEGKEIFVVG-DDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEE----- 197 (354)
T ss_pred hhcccccccccceeeeeeeeccc-cCcCCCeEEEEc-CchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHH-----
Confidence 44555555555555565555443 445688999999 3333333333222 228999999999999887664432
Q ss_pred cccCCCCCCCccEEEEECCccccCCC--CCCccEEEe
Q 004178 584 LDAAVPCTDVKSAVLFDGSITVFDSR--LHGFDIGTC 618 (770)
Q Consensus 584 ~~~l~pr~~~~~Vef~~GDaedlp~~--d~sFDlVVc 618 (770)
-+..+++.+.-|+...-++ ...||+.+.
T Consensus 198 -------~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 198 -------LGYNNIEAFVFDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred -------hCccchhheeehhcccChHHHHhhCCeeec
Confidence 2456788888898764333 367998743
No 396
>PRK05854 short chain dehydrogenase; Provisional
Probab=26.11 E-value=3.3e+02 Score=29.48 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=51.4
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|=.|++.|. .+..|++.+ .+|+.++-+++-.+.+.+.+... ....++.++..|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G---~~Vil~~R~~~~~~~~~~~l~~~-----------~~~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAG---AEVILPVRNRAKGEAAVAAIRTA-----------VPDAKLSLRALDLSSLA 78 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEEecCCCHH
Confidence 46789999987664 445666666 79999998887776665554321 11235888888987643
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+..|+++.+..
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG 102 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAG 102 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCc
Confidence 1 2356899887643
No 397
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=25.93 E-value=95 Score=33.08 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=43.3
Q ss_pred HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCCCccEEEeccccccC
Q 004178 546 LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLHGFDIGTCLEVIEHM 625 (770)
Q Consensus 546 l~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~sFDlVVc~eVLEHL 625 (770)
+..|.+.+ +..+|+|+|.++..++.|.+. +. +.-...+.+ ....+|+|+..--+
T Consensus 2 A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~----------------g~--~~~~~~~~~----~~~~~DlvvlavP~--- 55 (258)
T PF02153_consen 2 ALALRKAG-PDVEVYGYDRDPETLEAALEL----------------GI--IDEASTDIE----AVEDADLVVLAVPV--- 55 (258)
T ss_dssp HHHHHHTT-TTSEEEEE-SSHHHHHHHHHT----------------TS--SSEEESHHH----HGGCCSEEEE-S-H---
T ss_pred hHHHHhCC-CCeEEEEEeCCHHHHHHHHHC----------------CC--eeeccCCHh----HhcCCCEEEEcCCH---
Confidence 45566665 568999999999999888651 11 111111111 12456988765444
Q ss_pred ChhHHHHHHHHHHHcccCCEEEEEec
Q 004178 626 EEDEASQFGNIVLSSFRPRILIVSTP 651 (770)
Q Consensus 626 ~~d~~~~fleeI~rvLKPG~LIISTP 651 (770)
+....+++++...+++|.+++.+-
T Consensus 56 --~~~~~~l~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 56 --SAIEDVLEEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp --HHHHHHHHHHHCGS-TTSEEEE--
T ss_pred --HHHHHHHHHhhhhcCCCcEEEEeC
Confidence 344466667888888885444433
No 398
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.78 E-value=2.7e+02 Score=29.01 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCCccEEEeccccccCCh----------hHHHHHHHHHHHcccCC-EEEE-Ee-cCCchhHHHhhhccccCCCCCchhhh
Q 004178 610 LHGFDIGTCLEVIEHMEE----------DEASQFGNIVLSSFRPR-ILIV-ST-PNYEYNAILQKSSSTIQEDDPDEKTQ 676 (770)
Q Consensus 610 d~sFDlVVc~eVLEHL~~----------d~~~~fleeI~rvLKPG-~LII-ST-PN~efN~lf~~~~~~g~~e~pde~~~ 676 (770)
.+..|+|+.+.+|+-+.. ..++.+...+..+|+|+ .+|. +| |-.+.. -. |
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~--~g---------------g 110 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEI--KG---------------G 110 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCC--cC---------------c
Confidence 466899999988876652 12334444456666777 4443 33 221100 00 0
Q ss_pred hccccccCCCcccccCHHHHHHHHHHHHHHCCcEE
Q 004178 677 LQSCKFRNHDHKFEWTRDQFNCWATELAARHNYSV 711 (770)
Q Consensus 677 ~~~~~fRh~DHkfewTreEF~~Wa~~La~r~GY~V 711 (770)
+....+..-.....++..+....+..++.+||+.|
T Consensus 111 fl~~~~~~~~~~lr~dv~eaN~~A~~va~~~~~dV 145 (183)
T cd01842 111 FLLPELHDLSKSLRYDVLEGNFYSATLAKCYGFDV 145 (183)
T ss_pred eeccccccccccchhHHHHHHHHHHHHHHHcCcee
Confidence 00011111112234567777888889999999988
No 399
>PRK06223 malate dehydrogenase; Reviewed
Probab=25.75 E-value=5e+02 Score=28.10 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=25.0
Q ss_pred CEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHH
Q 004178 533 TTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLS 570 (770)
Q Consensus 533 ~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe 570 (770)
.+|.=+|+|. |......+...+.. +|+.+|++++.++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence 4788899987 66544443332222 8999999887653
No 400
>PRK08339 short chain dehydrogenase; Provisional
Probab=25.19 E-value=2.8e+02 Score=28.97 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=50.5
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|-.|++.|. ++..|++.+ .+|+.+|.+++.++.+.+.+.. ....++.++.+|+.+..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~Dv~~~~ 71 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG---ADVILLSRNEENLKKAREKIKS------------ESNVDVSYIVADLTKRE 71 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh------------hcCCceEEEEecCCCHH
Confidence 46788999987654 455677776 7899999998877666554421 11236788888887642
Q ss_pred C---------CCCCccEEEeccc
Q 004178 608 S---------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~---------~d~sFDlVVc~eV 621 (770)
. ..+..|+++....
T Consensus 72 ~i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 72 DLERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHHHhhCCCcEEEECCC
Confidence 1 1256898876543
No 401
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.68 E-value=71 Score=31.98 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=51.6
Q ss_pred cCCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 529 ESCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 529 ~~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
...+++|.=+|+|. |.-...+++..+ .+|+++|.+......+.. . .+ ...+++++
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~~-~------------------~~--~~~~l~el- 88 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGADE-F------------------GV--EYVSLDEL- 88 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHHH-T------------------TE--EESSHHHH-
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhccc-c------------------cc--eeeehhhh-
Confidence 34689999999984 665544444433 899999999876652221 0 11 11233332
Q ss_pred CCCCCccEEEecccc----ccCChhHHHHHHHHHHHcccCCEEEEEecC
Q 004178 608 SRLHGFDIGTCLEVI----EHMEEDEASQFGNIVLSSFRPRILIVSTPN 652 (770)
Q Consensus 608 ~~d~sFDlVVc~eVL----EHL~~d~~~~fleeI~rvLKPG~LIISTPN 652 (770)
....|+|+..--+ +|+- -++.+..+|+|.++|.+-.
T Consensus 89 --l~~aDiv~~~~plt~~T~~li-------~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 89 --LAQADIVSLHLPLTPETRGLI-------NAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp --HHH-SEEEE-SSSSTTTTTSB-------SHHHHHTSTTTEEEEESSS
T ss_pred --cchhhhhhhhhccccccceee-------eeeeeeccccceEEEeccc
Confidence 2457877664332 3333 2456779999977665544
No 402
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=24.64 E-value=2.2e+02 Score=28.66 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
.++.+||..|+|. |..+..+++..+ .+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 5688999999995 777777776653 789999999887777644
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.57 E-value=4e+02 Score=30.63 Aligned_cols=37 Identities=22% Similarity=0.360 Sum_probs=28.0
Q ss_pred CEEEEEcCccc--hHHHHHhcCCCCCceEEEEeCChHHHHHH
Q 004178 533 TTLVDFGCGSG--SLLDSLLDYPTALEKIVGVDISQKSLSRA 572 (770)
Q Consensus 533 ~rVLDIGCGtG--~ll~~LAk~ggp~~~VvGVDISeemLe~A 572 (770)
.+|.=||.|.. .++..|++.+ .+|+|+|++++.++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeCCHHHHHHH
Confidence 56888888853 3455667776 8999999999888753
No 404
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=24.20 E-value=2.8e+02 Score=32.19 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHH
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRA 572 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~A 572 (770)
..+++|+=+|+|. |......++..+ .+|+++|.++.-...|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A 234 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEA 234 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHH
Confidence 4688999999996 555555555443 7899999988644333
No 405
>PRK07814 short chain dehydrogenase; Provisional
Probab=24.18 E-value=2.5e+02 Score=29.10 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
+++++|=.|.+.|. ++..|++.+ .+|++++.+++.++...+.+.. ...++.++..|+.+..
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~ 72 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAG---ADVLIAARTESQLDEVAEQIRA-------------AGRRAHVVAADLAHPE 72 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEccCCCHH
Confidence 46789999965432 334455665 7999999988766655443321 1235788888877643
Q ss_pred C----------CCCCccEEEecc
Q 004178 608 S----------RLHGFDIGTCLE 620 (770)
Q Consensus 608 ~----------~d~sFDlVVc~e 620 (770)
. ..+.+|+|+...
T Consensus 73 ~~~~~~~~~~~~~~~id~vi~~A 95 (263)
T PRK07814 73 ATAGLAGQAVEAFGRLDIVVNNV 95 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECC
Confidence 2 124689998754
No 406
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=24.04 E-value=3.1e+02 Score=28.18 Aligned_cols=74 Identities=16% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCCEEEEEcCccchHH----HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 531 CATTLVDFGCGSGSLL----DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll----~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
.++++|=.|+. |..+ ..|++.+ .+|+.++-+.+.++...+.+.. ...++.++.+|+.+.
T Consensus 11 ~~k~ilItGa~-g~IG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~i~~-------------~~~~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTALVTGGS-RGLGLQIAEALGEAG---ARVVLSARKAEELEEAAAHLEA-------------LGIDALWIAADVADE 73 (259)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEccCCCH
Confidence 46789999954 4433 3444555 6899999988776666554421 123577889998764
Q ss_pred CC----------CCCCccEEEeccc
Q 004178 607 DS----------RLHGFDIGTCLEV 621 (770)
Q Consensus 607 p~----------~d~sFDlVVc~eV 621 (770)
.. ..+.+|+|+....
T Consensus 74 ~~i~~~~~~~~~~~~~id~vi~~ag 98 (259)
T PRK08213 74 ADIERLAEETLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 32 1246899887654
No 407
>PRK08324 short chain dehydrogenase; Validated
Probab=23.78 E-value=4.7e+02 Score=31.93 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCEEEEEcCccc--h-HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSG--S-LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG--~-ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.+++||-.|++.| . ++..|++.+ .+|+.+|.++..++.+.+.+. .. .++.++.+|+.+..
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G---a~Vvl~~r~~~~~~~~~~~l~-------------~~-~~v~~v~~Dvtd~~ 483 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG---ACVVLADLDEEAAEAAAAELG-------------GP-DRALGVACDVTDEA 483 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc---CEEEEEeCCHHHHHHHHHHHh-------------cc-CcEEEEEecCCCHH
Confidence 5689999997544 3 344555665 789999999887766655432 11 36788888876532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+++|+|+..-.
T Consensus 484 ~v~~~~~~~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 484 AVQAAFEEAALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1247899887654
No 408
>PRK05867 short chain dehydrogenase; Provisional
Probab=23.50 E-value=2.8e+02 Score=28.39 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
+++++|-.|++.|. .+..|++.+ .+|+.++.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~ 71 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG---AQVAIAARHLDALEKLADEIGT-------------SGGKVVPVCCDVSQHQ 71 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHHHh-------------cCCeEEEEEccCCCHH
Confidence 46889999987653 455666766 7899999988777665554421 1235778888876532
Q ss_pred C----------CCCCccEEEecccc
Q 004178 608 S----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eVL 622 (770)
. ..+..|+++.+..+
T Consensus 72 ~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 72 QVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1 12578998876543
No 409
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.33 E-value=3.8e+02 Score=27.36 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred HhhcCCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECC
Q 004178 526 HIKESCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGS 602 (770)
Q Consensus 526 ~L~~~~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GD 602 (770)
.+...+++++|-.|++.|. ++..|++.+ .+|++++-+++.++...+... . .++.++.+|
T Consensus 5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~~~--------------~-~~~~~~~~D 66 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAG---ARVHVCDVSEAALAATAARLP--------------G-AKVTATVAD 66 (264)
T ss_pred HhhccCCCEEEEeCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHh--------------c-CceEEEEcc
Confidence 4444567899999986332 233445555 789999988876655433221 1 156788888
Q ss_pred ccccCC----------CCCCccEEEeccc
Q 004178 603 ITVFDS----------RLHGFDIGTCLEV 621 (770)
Q Consensus 603 aedlp~----------~d~sFDlVVc~eV 621 (770)
+.+... ..+++|+|+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 67 VADPAQVERVFDTAVERFGGLDVLVNNAG 95 (264)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 775431 1246899887543
No 410
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.20 E-value=1.4e+02 Score=33.79 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=37.7
Q ss_pred HHHHhhcCCCCEEEEEcCccchHHH-HHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 523 ALQHIKESCATTLVDFGCGSGSLLD-SLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 523 Il~~L~~~~~~rVLDIGCGtG~ll~-~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
..+..+..++.++.-+|+|.=.++. .-++.. ...+++|||++++-.+.|++
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~-GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAA-GASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhc-CcccEEEEecCHHHHHHHHh
Confidence 3455566779999999999754443 333333 35899999999999999976
No 411
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=23.19 E-value=54 Score=38.15 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCEEEEEcCccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 531 CATTLVDFGCGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 531 ~~~rVLDIGCGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
.+..|.|+-||-|-++..+++.+ ++|++-|.+++++++-+.++.-. . -...+++.+..|+.++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lN--k--------v~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLN--K--------VDPSAIEIFNMDAKDF 311 (495)
T ss_pred CcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhcccc--c--------cchhheeeecccHHHH
Confidence 47889999999999999998887 99999999999999998876311 0 1123477777776543
No 412
>PTZ00357 methyltransferase; Provisional
Probab=23.19 E-value=1.8e+02 Score=36.17 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=48.9
Q ss_pred EEEEEcCccchHHHHHhcC---CCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCC------CccEEEEECCcc
Q 004178 534 TLVDFGCGSGSLLDSLLDY---PTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTD------VKSAVLFDGSIT 604 (770)
Q Consensus 534 rVLDIGCGtG~ll~~LAk~---ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~------~~~Vef~~GDae 604 (770)
.|+-+|+|-|-+.....+. .+...+|++|+-++..+.....+.... +.+. ...|+++..|+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~---------eeW~n~~~~~G~~VtII~sDMR 773 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWAND---------PEWTQLAYTFGHTLEVIVADGR 773 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcc---------cccccccccCCCeEEEEeCccc
Confidence 5899999999887655432 223468999999966544443332110 0111 246999999998
Q ss_pred ccCCC-----------CCCccEEEe
Q 004178 605 VFDSR-----------LHGFDIGTC 618 (770)
Q Consensus 605 dlp~~-----------d~sFDlVVc 618 (770)
....+ .+.+|+||+
T Consensus 774 ~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 774 TIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccccccccccceehH
Confidence 87432 136999876
No 413
>PRK06139 short chain dehydrogenase; Provisional
Probab=23.06 E-value=3.3e+02 Score=29.97 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=49.6
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.+++||=.|++.|. ++..|++.+ .+|+.++-+++.++...+.+.. ...++.++..|+.+..
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G---~~Vvl~~R~~~~l~~~~~~~~~-------------~g~~~~~~~~Dv~d~~ 69 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG---ARLVLAARDEEALQAVAEECRA-------------LGAEVLVVPTDVTDAD 69 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHh-------------cCCcEEEEEeeCCCHH
Confidence 46789999986543 345566666 7899999998887766554431 1235677777876532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+++.+--
T Consensus 70 ~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 70 QVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 1 1257899988643
No 414
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=22.67 E-value=6.1e+02 Score=28.05 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 530 SCATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
..+.+|.=+|+|. |..+..++...+-..+++-+|++++.++--..-+.... | ...++.+..++.+++
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~--------~--~~~~~~i~~~~~~~~-- 71 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV--------P--FTSPTKIYAGDYSDC-- 71 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc--------c--ccCCeEEEeCCHHHh--
Confidence 3567999999986 66555444333233589999998876543322222110 0 112355555554433
Q ss_pred CCCCccEEEecccc
Q 004178 609 RLHGFDIGTCLEVI 622 (770)
Q Consensus 609 ~d~sFDlVVc~eVL 622 (770)
...|+|+...-.
T Consensus 72 --~~adivIitag~ 83 (315)
T PRK00066 72 --KDADLVVITAGA 83 (315)
T ss_pred --CCCCEEEEecCC
Confidence 578888875544
No 415
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=22.59 E-value=2.9e+02 Score=28.15 Aligned_cols=76 Identities=8% Similarity=0.012 Sum_probs=45.9
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
++++||=.|+..|. ++..|++.+ .+|+++|.+.+.++...+.+.. ....++.++.+|+...+
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G---~~Vi~~~r~~~~~~~~~~~l~~------------~~~~~~~~~~~d~~~~~ 75 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHG---ATVILLGRTEEKLEAVYDEIEA------------AGGPQPAIIPLDLLTAT 75 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CcEEEEeCCHHHHHHHHHHHHh------------cCCCCceEEEecccCCC
Confidence 57889999965432 334455555 7999999988766555443321 12235667777764321
Q ss_pred ------------CCCCCccEEEeccc
Q 004178 608 ------------SRLHGFDIGTCLEV 621 (770)
Q Consensus 608 ------------~~d~sFDlVVc~eV 621 (770)
...+..|.|+....
T Consensus 76 ~~~~~~~~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 76 PQNYQQLADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 11246899887653
No 416
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=22.47 E-value=6.6e+02 Score=27.22 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=18.8
Q ss_pred EEcCcc-chHHHH-HhcCCCCCceEEEEeCChHHH
Q 004178 537 DFGCGS-GSLLDS-LLDYPTALEKIVGVDISQKSL 569 (770)
Q Consensus 537 DIGCGt-G~ll~~-LAk~ggp~~~VvGVDISeemL 569 (770)
=+|+|. |..... ++..+ -. +|+.+|++++.+
T Consensus 3 IIGaG~vG~~ia~~la~~~-l~-eV~L~Di~e~~~ 35 (300)
T cd01339 3 IIGAGNVGATLAQLLALKE-LG-DVVLLDIVEGLP 35 (300)
T ss_pred EECCCHHHHHHHHHHHhCC-Cc-EEEEEeCCCcHH
Confidence 478876 443333 33333 12 899999998743
No 417
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=22.34 E-value=5.8e+02 Score=27.85 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=40.1
Q ss_pred EEEEEcCcc-chHH-HHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCCCCC
Q 004178 534 TLVDFGCGS-GSLL-DSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDSRLH 611 (770)
Q Consensus 534 rVLDIGCGt-G~ll-~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~~d~ 611 (770)
+|.=+|||. |..+ ..|+..+ ...+++.+|++++..+.....+..... .....+.+..++..+ ..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g-~~~ei~l~D~~~~~~~~~a~dL~~~~~---------~~~~~~~i~~~~~~~----l~ 67 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQG-IADELVLIDINEEKAEGEALDLEDALA---------FLPSPVKIKAGDYSD----CK 67 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcC-CCCEEEEEeCCcchhhHhHhhHHHHhh---------ccCCCeEEEcCCHHH----hC
Confidence 678899985 4433 3334433 235899999988765544333321110 011223444344332 25
Q ss_pred CccEEEecccc
Q 004178 612 GFDIGTCLEVI 622 (770)
Q Consensus 612 sFDlVVc~eVL 622 (770)
..|+|+...-.
T Consensus 68 ~aDIVIitag~ 78 (306)
T cd05291 68 DADIVVITAGA 78 (306)
T ss_pred CCCEEEEccCC
Confidence 78998875433
No 418
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport. Using a diverse set of substrates and direct ubiquitination assays, analysis revealed that HRD4/NPL4 is required for a poorly characterised step in ER-associated degradation following ubiquitination of target proteins but preceding their recognition by the 26S proteasome []. Npl4p physically associates with Cdc48p via Ufd1p to form a Cdc48p-Ufd1p-Npl4p complex. The Cdc48-Ufd1-Npl4 complex functions in the recognition of several polyubiquitin-tagged proteins and facilitates their presentation to the 26S proteasome for processive degradation or even more specific processing [].
Probab=22.10 E-value=93 Score=34.64 Aligned_cols=41 Identities=27% Similarity=0.206 Sum_probs=34.2
Q ss_pred cEEEEEEEeccccccceeeEEEEecCCcchHHHHHHhcCCCC
Q 004178 44 SICIEAIHIPSSLEMAVHPVTLNVSSTGYYLDVIARNLDQTD 85 (770)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~a~~l~~~d 85 (770)
.+.|+|||-|-- +.+...++|.=..++=-.|.||+.||+.-
T Consensus 20 ka~VeaIYEPpQ-~~~~d~~~l~~d~~~~~vd~iA~~lGL~r 60 (306)
T PF05021_consen 20 KAVVEAIYEPPQ-EGEPDGFTLLPDENEERVDAIASALGLER 60 (306)
T ss_pred EEEEEEEECCCc-CCCCCCEEEcCCccHHHHHHHHHHCCCEE
Confidence 478999999987 56777888866777789999999999953
No 419
>PRK07677 short chain dehydrogenase; Provisional
Probab=21.94 E-value=3.1e+02 Score=28.13 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=46.8
Q ss_pred CEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 533 TTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 533 ~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
+++|-.|++.|. ++..|++.+ .+|+++|-++..++...+.+.. ...++.++.+|+.+...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~~ 65 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG---ANVVITGRTKEKLEEAKLEIEQ-------------FPGQVLTVQMDVRNPEDV 65 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCcEEEEEecCCCHHHH
Confidence 578889987653 445566666 7899999988766655544421 12367888888765321
Q ss_pred ---------CCCCccEEEecc
Q 004178 609 ---------RLHGFDIGTCLE 620 (770)
Q Consensus 609 ---------~d~sFDlVVc~e 620 (770)
..+..|+++...
T Consensus 66 ~~~~~~~~~~~~~id~lI~~a 86 (252)
T PRK07677 66 QKMVEQIDEKFGRIDALINNA 86 (252)
T ss_pred HHHHHHHHHHhCCccEEEECC
Confidence 124689988654
No 420
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.90 E-value=3.1e+02 Score=32.54 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=54.3
Q ss_pred CEEEEEcCcc-chH-HHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC---
Q 004178 533 TTLVDFGCGS-GSL-LDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD--- 607 (770)
Q Consensus 533 ~rVLDIGCGt-G~l-l~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp--- 607 (770)
.+++=+|||. |.. +..|.+.+ .+|+.+|.+++.++.+++ .....+.||+.+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~d~~~~~~~~~-------------------~g~~~i~GD~~~~~~L~ 475 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAG---IPLVVIETSRTRVDELRE-------------------RGIRAVLGNAANEEIMQ 475 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHH-------------------CCCeEEEcCCCCHHHHH
Confidence 5677777774 332 33444444 789999999998888864 14678889987642
Q ss_pred -CCCCCccEEEeccccccCChhH-HHHHHHHHHHcccCC-EEEEEecCC
Q 004178 608 -SRLHGFDIGTCLEVIEHMEEDE-ASQFGNIVLSSFRPR-ILIVSTPNY 653 (770)
Q Consensus 608 -~~d~sFDlVVc~eVLEHL~~d~-~~~fleeI~rvLKPG-~LIISTPN~ 653 (770)
......|.+++. .+++. ...+.. ..+...|. .++..+.+.
T Consensus 476 ~a~i~~a~~viv~-----~~~~~~~~~iv~-~~~~~~~~~~iiar~~~~ 518 (558)
T PRK10669 476 LAHLDCARWLLLT-----IPNGYEAGEIVA-SAREKRPDIEIIARAHYD 518 (558)
T ss_pred hcCccccCEEEEE-----cCChHHHHHHHH-HHHHHCCCCeEEEEECCH
Confidence 123567765432 12122 222332 44556677 555554443
No 421
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=21.73 E-value=2.9e+02 Score=28.72 Aligned_cols=75 Identities=16% Similarity=0.029 Sum_probs=48.3
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
+++++|=.|++.|. ++..|++.+ .+|+.+|.+++.++...+.+.. ...++.++.+|+.+..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 72 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAG---AKVAILDRNQEKAEAVVAEIKA-------------AGGEALAVKADVLDKE 72 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEECCCCCHH
Confidence 46788989976543 345566666 7899999987766555443321 1235788888886542
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+++....
T Consensus 73 ~v~~~~~~~~~~~g~id~li~~ag 96 (278)
T PRK08277 73 SLEQARQQILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1257899987644
No 422
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=21.65 E-value=1.1e+03 Score=26.08 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHH
Q 004178 532 ATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSL 569 (770)
Q Consensus 532 ~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemL 569 (770)
..+|.=||+|. |.....++... ....++-+|++++..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKNIP 43 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCchh
Confidence 36899999997 44443333322 124699999999864
No 423
>PRK06196 oxidoreductase; Provisional
Probab=21.65 E-value=3.5e+02 Score=29.07 Aligned_cols=71 Identities=14% Similarity=-0.017 Sum_probs=46.6
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.+++||=.|++.|. ++..|++.+ .+|++++-+++.++.+.+.+ ..+.++.+|+.+..
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G---~~Vv~~~R~~~~~~~~~~~l-----------------~~v~~~~~Dl~d~~ 84 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAG---AHVIVPARRPDVAREALAGI-----------------DGVEVVMLDLADLE 84 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHh-----------------hhCeEEEccCCCHH
Confidence 46789999976542 344555665 78999998877665544322 13677888887643
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+..|+++.+..
T Consensus 85 ~v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 85 SVRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCC
Confidence 1 1257899888654
No 424
>PRK07063 short chain dehydrogenase; Provisional
Probab=21.51 E-value=3.5e+02 Score=27.74 Aligned_cols=77 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|-.|++.|. ++..|++.+ .+|+.+|.+++.++...+.+... ....++.++..|+.+..
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G---~~vv~~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Dl~~~~ 71 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG---AAVALADLDAALAERAAAAIARD-----------VAGARVLAVPADVTDAA 71 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHhc-----------cCCceEEEEEccCCCHH
Confidence 46789999986553 445666666 78999999888777666555310 11236788888886542
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+++....
T Consensus 72 ~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 72 SVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCC
Confidence 1 1246898887654
No 425
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.40 E-value=2.4e+02 Score=29.34 Aligned_cols=73 Identities=10% Similarity=0.098 Sum_probs=46.2
Q ss_pred EEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 534 TLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 534 rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
+||-.|+..|. ++..|++.+ .+|+.++.+++-++.+.+.+.. ...++.++.+|+.+...
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g---~~V~~~~r~~~~~~~~~~~l~~-------------~~~~~~~~~~D~~~~~~~~ 65 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG---WRLALADVNEEGGEETLKLLRE-------------AGGDGFYQRCDVRDYSQLT 65 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEccCCCHHHHH
Confidence 67878875543 345566665 7899999888766655544421 12357788888865431
Q ss_pred --------CCCCccEEEecccc
Q 004178 609 --------RLHGFDIGTCLEVI 622 (770)
Q Consensus 609 --------~d~sFDlVVc~eVL 622 (770)
..+.+|+++....+
T Consensus 66 ~~~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 66 ALAQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 12468998886543
No 426
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=21.25 E-value=2.1e+02 Score=29.42 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCCEEEEEcCcc-ch-HHHHHhcCCCCCceEEEEeCC
Q 004178 530 SCATTLVDFGCGS-GS-LLDSLLDYPTALEKIVGVDIS 565 (770)
Q Consensus 530 ~~~~rVLDIGCGt-G~-ll~~LAk~ggp~~~VvGVDIS 565 (770)
....+||=+|||. |. .+..|+..+ ..+++-+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 3468999999994 55 456666665 4789999977
No 427
>PRK06197 short chain dehydrogenase; Provisional
Probab=21.07 E-value=5e+02 Score=27.66 Aligned_cols=79 Identities=16% Similarity=0.045 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCcccc
Q 004178 530 SCATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVF 606 (770)
Q Consensus 530 ~~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedl 606 (770)
..+++||=.|+..|. ++..|++.+ .+|+.++-+++..+.+.+.+... ....++.++.+|+.+.
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G---~~vi~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKG---AHVVLAVRNLDKGKAAAARITAA-----------TPGADVTLQELDLTSL 79 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCH
Confidence 356789988875442 334556665 78999998877766655444211 1123578888998764
Q ss_pred CC----------CCCCccEEEecccc
Q 004178 607 DS----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 607 p~----------~d~sFDlVVc~eVL 622 (770)
.. ..+.+|+++....+
T Consensus 80 ~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 80 ASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 31 12468999876543
No 428
>PRK08507 prephenate dehydrogenase; Validated
Probab=20.79 E-value=2.6e+02 Score=29.76 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=27.9
Q ss_pred EEEEEcCcc--chHHHHHhcCCCCCceEEEEeCChHHHHHHHH
Q 004178 534 TLVDFGCGS--GSLLDSLLDYPTALEKIVGVDISQKSLSRAAK 574 (770)
Q Consensus 534 rVLDIGCGt--G~ll~~LAk~ggp~~~VvGVDISeemLe~Ark 574 (770)
+|.=||+|. |.++..|.+.+ ...+|+++|.+++.++.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g-~~~~v~~~d~~~~~~~~~~~ 43 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKG-LISKVYGYDHNELHLKKALE 43 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcC-CCCEEEEEcCCHHHHHHHHH
Confidence 466788885 45666666654 23479999999988776643
No 429
>PRK09242 tropinone reductase; Provisional
Probab=20.69 E-value=4.8e+02 Score=26.72 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|-.|++.|. ++..|++.+ .+|+.++.+++.++...+.+... ....++.++.+|+.+..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G---~~v~~~~r~~~~~~~~~~~l~~~-----------~~~~~~~~~~~Dl~~~~ 73 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG---ADVLIVARDADALAQARDELAEE-----------FPEREVHGLAADVSDDE 73 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhh-----------CCCCeEEEEECCCCCHH
Confidence 46789999986542 344556665 78999998887776655544211 11236788888886532
Q ss_pred C----------CCCCccEEEecccc
Q 004178 608 S----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eVL 622 (770)
. ..+.+|+|+.....
T Consensus 74 ~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 74 DRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 1 23578998876543
No 430
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=20.69 E-value=1.4e+02 Score=30.62 Aligned_cols=112 Identities=19% Similarity=0.160 Sum_probs=67.5
Q ss_pred cccccceeeeeccceeecCCccccccchhhhhhhhhccCCCcccccchhhhhhhcCCcceeeccccCCCChhhHHHhhhh
Q 004178 143 QDIYGDAILASIGYTRKSEGLFHEDITLQSYYRMLIHLTPSGVYKLSREAILTAELPMAFTTRTNWRGSFPREMLFMFCR 222 (770)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~k~sr~~~~~a~lp~~~~~~~~w~g~~p~~~l~~fc~ 222 (770)
..+.+|++-|=||.-|-+.. .+..-..+.+++.-.+- +.+ . .+ ...-|...|-.+|+
T Consensus 107 ~k~~ad~~eAliGAiyld~g---~~~~~~~i~~~~~~~~~--------~~~----------~-~~-~~~~pk~~L~e~~~ 163 (220)
T TIGR02191 107 ESILADAFEALIGAIYLDSG---LEAARKFILKLLIPRID--------AIE----------K-EE-TLKDYKTALQEWAQ 163 (220)
T ss_pred chHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH--------hhh----------c-cc-ccCChHHHHHHHHH
Confidence 34789999999999986655 22222333333332110 000 0 11 45578999999999
Q ss_pred hcccCcceeecccCCccccccchhhhhhhhhcccccccccccCCCcccCCCceeeEEEEeeccCCcccccCchhhhhhhh
Q 004178 223 QHWLSEPVFSTCSNSLKESSESSRFYEKSAALESAETGKECTSGGGTAASDNVRCEVKIFSKSRDPILECSPKEFYKKQN 302 (770)
Q Consensus 223 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (770)
.+...+|.|... . .. |......|.|+|.+- ++.+-+ ..-++..
T Consensus 164 ~~~~~~p~y~~~--~--------------------------~~--g~~~~~~f~~~v~~~---~~~~~~----g~g~skk 206 (220)
T TIGR02191 164 ARGKPLPEYRLI--K--------------------------EE--GPDHDKEFTVEVSVN---GEPYGE----GKGKSKK 206 (220)
T ss_pred HcCCCCceEEEe--c--------------------------cc--CCCCCceEEEEEEEC---CEEEEE----eeeCCHH
Confidence 888889988554 1 00 111223599999875 223222 2234568
Q ss_pred hhHhhhhhHHHH
Q 004178 303 ESIENASLKVLS 314 (770)
Q Consensus 303 ~~~~~~~l~~l~ 314 (770)
+|-|+||-+||-
T Consensus 207 ~A~~~AA~~Al~ 218 (220)
T TIGR02191 207 EAEQNAAKAALE 218 (220)
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 431
>PRK06172 short chain dehydrogenase; Provisional
Probab=20.69 E-value=3.5e+02 Score=27.63 Aligned_cols=75 Identities=12% Similarity=0.018 Sum_probs=49.1
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|-.|++.|. ++..|++.+ .+|+.++-+++-++...+.+.. ...++.++.+|+.+..
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 69 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREG---AKVVVADRDAAGGEETVALIRE-------------AGGEALFVACDVTRDA 69 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEcCCCCHH
Confidence 46789999976543 344566665 7899999988776655554421 1235888889987532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+|+....
T Consensus 70 ~i~~~~~~~~~~~g~id~li~~ag 93 (253)
T PRK06172 70 EVKALVEQTIAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 1 1246799987654
No 432
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=20.61 E-value=3.7e+02 Score=27.07 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=47.4
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.+++||=.|++.|. ++..|++.+ .+|++++-++..+....+.+. ....++.++.+|+.+..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r~~~~~~~~~~~l~-------------~~~~~~~~~~~Dl~~~~ 68 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADG---AEVIVVDICGDDAAATAELVE-------------AAGGKARARQVDVRDRA 68 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHH-------------hcCCeEEEEECCCCCHH
Confidence 45789988865432 344556665 789999988766655444332 12235888888887642
Q ss_pred C----------CCCCccEEEecccc
Q 004178 608 S----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eVL 622 (770)
. ..+.+|+|++....
T Consensus 69 ~~~~~~~~~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 69 ALKAAVAAGVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 1 12368988876543
No 433
>PRK07454 short chain dehydrogenase; Provisional
Probab=20.49 E-value=4e+02 Score=26.94 Aligned_cols=76 Identities=14% Similarity=0.017 Sum_probs=47.5
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
..+++|-.|+..|. ++..|++.+ .+|++++-+++-++...+.+.. ...++.++.+|+.+..
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G---~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 68 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAG---WDLALVARSQDALEALAAELRS-------------TGVKAAAYSIDLSNPE 68 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------CCCcEEEEEccCCCHH
Confidence 35688999964332 344555565 6899999988765554443321 1236888899987643
Q ss_pred C----------CCCCccEEEecccc
Q 004178 608 S----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eVL 622 (770)
. ..+..|+++.....
T Consensus 69 ~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 69 AIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCc
Confidence 1 12458999876543
No 434
>PRK07102 short chain dehydrogenase; Provisional
Probab=20.46 E-value=3.5e+02 Score=27.44 Aligned_cols=72 Identities=13% Similarity=-0.032 Sum_probs=45.1
Q ss_pred CEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC-
Q 004178 533 TTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS- 608 (770)
Q Consensus 533 ~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~- 608 (770)
+++|-.|+..|. ++..|++.+ .+|+++|.+++-.+...+.+.. ....++.++++|+.+...
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~------------~~~~~~~~~~~Dl~~~~~~ 66 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG---ARLYLAARDVERLERLADDLRA------------RGAVAVSTHELDILDTASH 66 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHH------------hcCCeEEEEecCCCChHHH
Confidence 478888865432 344555665 7899999998766554443321 122478899999876432
Q ss_pred ------CCCCccEEEec
Q 004178 609 ------RLHGFDIGTCL 619 (770)
Q Consensus 609 ------~d~sFDlVVc~ 619 (770)
....+|+++..
T Consensus 67 ~~~~~~~~~~~d~vv~~ 83 (243)
T PRK07102 67 AAFLDSLPALPDIVLIA 83 (243)
T ss_pred HHHHHHHhhcCCEEEEC
Confidence 12357988864
No 435
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.23 E-value=4.1e+02 Score=30.28 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=35.4
Q ss_pred cCCCCEEEEEc-CccchHHHHHhcCCCCCceEEEEeCChHHHHHHHHHH
Q 004178 529 ESCATTLVDFG-CGSGSLLDSLLDYPTALEKIVGVDISQKSLSRAAKII 576 (770)
Q Consensus 529 ~~~~~rVLDIG-CGtG~ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL 576 (770)
..++++|-=+| +|-|.++..+++..+ .+|+++|-+..--+.|-+++
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~L 225 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSL 225 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhc
Confidence 34678888888 568999999998765 89999999876666665544
No 436
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.14 E-value=3e+02 Score=32.09 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=27.7
Q ss_pred CCCEEEEEcCcc-chHHHHHhcCCCCCceEEEEeCChHHHHHH
Q 004178 531 CATTLVDFGCGS-GSLLDSLLDYPTALEKIVGVDISQKSLSRA 572 (770)
Q Consensus 531 ~~~rVLDIGCGt-G~ll~~LAk~ggp~~~VvGVDISeemLe~A 572 (770)
.+++|+=+|+|. |..+...++..+ .+|+.+|+++.....|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A 251 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQA 251 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHH
Confidence 688999999995 444444444332 6899999998655444
No 437
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=20.11 E-value=3.7e+02 Score=27.50 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=47.9
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.++++|-.|++.|. ++..|++.+ .+|+.++-+++.++...+.+.. ...++.++.+|+.+..
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G---~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~Dl~~~~ 73 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAG---AHVLVNGRNAATLEAAVAALRA-------------AGGAAEALAFDIADEE 73 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHh-------------cCCceEEEEccCCCHH
Confidence 47889999975432 334455555 7999999998776655554421 1235778888876532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+++....
T Consensus 74 ~~~~~~~~~~~~~~~id~vi~~ag 97 (256)
T PRK06124 74 AVAAAFARIDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 1 1246788887544
No 438
>PRK07035 short chain dehydrogenase; Provisional
Probab=20.08 E-value=3.6e+02 Score=27.46 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=48.4
Q ss_pred CCCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccC
Q 004178 531 CATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFD 607 (770)
Q Consensus 531 ~~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp 607 (770)
.+++||=.|++.|. ++..|++.+ .+|+++|.+++.++...+.+.. ...++.++..|+.+..
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G---~~Vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~~D~~~~~ 70 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQG---AHVIVSSRKLDGCQAVADAIVA-------------AGGKAEALACHIGEME 70 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHh-------------cCCeEEEEEcCCCCHH
Confidence 45789999988764 445566666 7999999988766655554421 1235667777876532
Q ss_pred C----------CCCCccEEEeccc
Q 004178 608 S----------RLHGFDIGTCLEV 621 (770)
Q Consensus 608 ~----------~d~sFDlVVc~eV 621 (770)
. ..+.+|+++....
T Consensus 71 ~~~~~~~~~~~~~~~id~li~~ag 94 (252)
T PRK07035 71 QIDALFAHIRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCC
Confidence 1 1246899886553
No 439
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=20.03 E-value=3.7e+02 Score=27.73 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=46.6
Q ss_pred EEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC--
Q 004178 534 TLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS-- 608 (770)
Q Consensus 534 rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~-- 608 (770)
++|=.|.+.|. ++..|++.+ .+|+.++.+++.++.+.+.+.. ..++.++..|+.+...
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G---~~V~~~~r~~~~~~~~~~~l~~--------------~~~~~~~~~Dv~d~~~~~ 64 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG---ARVVISSRNEENLEKALKELKE--------------YGEVYAVKADLSDKDDLK 64 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHh--------------cCCceEEEcCCCCHHHHH
Confidence 57778876553 445566666 7899999998877766555421 1257788888765321
Q ss_pred --------CCCCccEEEeccc
Q 004178 609 --------RLHGFDIGTCLEV 621 (770)
Q Consensus 609 --------~d~sFDlVVc~eV 621 (770)
..+..|+++....
T Consensus 65 ~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 65 NLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHhcCCCCEEEECCC
Confidence 2357899887643
No 440
>PRK08251 short chain dehydrogenase; Provisional
Probab=20.02 E-value=5.3e+02 Score=26.14 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=47.7
Q ss_pred CCEEEEEcCccch---HHHHHhcCCCCCceEEEEeCChHHHHHHHHHHhhhhhcccccCCCCCCCccEEEEECCccccCC
Q 004178 532 ATTLVDFGCGSGS---LLDSLLDYPTALEKIVGVDISQKSLSRAAKIIHSKLSKKLDAAVPCTDVKSAVLFDGSITVFDS 608 (770)
Q Consensus 532 ~~rVLDIGCGtG~---ll~~LAk~ggp~~~VvGVDISeemLe~ArkrL~~~~s~~~~~l~pr~~~~~Vef~~GDaedlp~ 608 (770)
++++|-.|+..|. ++..|++.+ .+|+.++-+++.++...+.+... ....++.++.+|+.+...
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g---~~v~~~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~D~~~~~~ 67 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG---RDLALCARRTDRLEELKAELLAR-----------YPGIKVAVAALDVNDHDQ 67 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhh-----------CCCceEEEEEcCCCCHHH
Confidence 3578888865432 334455555 68999999887776655443211 112368889999876431
Q ss_pred ----------CCCCccEEEecccc
Q 004178 609 ----------RLHGFDIGTCLEVI 622 (770)
Q Consensus 609 ----------~d~sFDlVVc~eVL 622 (770)
..+..|+|+....+
T Consensus 68 ~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 68 VFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 13568988876543
Done!