BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004180
(770 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XVF0|MEE12_ARATH TATA box-binding protein-associated factor RNA polymerase I subunit
B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1
Length = 666
Score = 523 bits (1346), Expect = e-147, Method: Compositional matrix adjust.
Identities = 306/738 (41%), Positives = 424/738 (57%), Gaps = 93/738 (12%)
Query: 13 CKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADEDFMATGAGTGTALYQASHARQ-- 70
C +C+N F+ DG+YYC C + +++TGV D D + G GT ALY H R
Sbjct: 3 CTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRRTEP 62
Query: 71 --VANSRPANHFVPLSQQSSFWSPLFDEPNTTTTTTTTANYNDLDSIIHRIKREEVSYTD 128
+ S+P F + + S + F+ N + +KR SY D
Sbjct: 63 QPITPSQP--RFTDDTSRYSQFKSQFESENGNK------------ELPREVKRAPDSYVD 108
Query: 129 MVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLICGVA 188
PTEP DF + YE+Y+ E R +YV +MI QC+ALVDKFNV PLI G+
Sbjct: 109 K-EPTEPVDFAAE---TLSYENYYDEARDRYVKAFLMMITYQCDALVDKFNVTPLIIGLV 164
Query: 189 ASIWFRFLASTGLLSQGWADEAIVQSE--SQELESKDFQPRAKYRDEPHTLHGQRAVMIW 246
I R++A +G+ + WA+ AI SE S++ E KD + +++ EP + G+RAV IW
Sbjct: 165 GPISLRYVALSGVYHKDWANNAIRDSEHQSEDGEVKDAKRLKRHKAEPRNIDGKRAVTIW 224
Query: 247 YKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEKRFGQTSV 306
+ +L++ +PLSSSL ISFLACH +LPTDIV+W+ EGK+PY + F++I ++ G+ S
Sbjct: 225 FGILKKTMPLSSSLVISFLACHQAGAPVLPTDIVRWAREGKLPYLSCFLDIREQMGERSA 284
Query: 307 ACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKIL 366
AC + S M RP + + +Q LE+ A+ IA++IGL LPPVNFY +AS Y+KQL +P KIL
Sbjct: 285 ACPVKVSIMARPFQVISAQMLEARASVIADTIGLPLPPVNFYGIASNYIKQLSIPEDKIL 344
Query: 367 PRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKSLSSRKFF 426
A IQ WS+PP+L+LSTNE + P+RVCVMSILIV+IR+LYNING G WE+SL F
Sbjct: 345 DLARLIQNWSLPPELYLSTNEQKLPSRVCVMSILIVAIRMLYNINGLGVWERSLG----F 400
Query: 427 SSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELDAEALLYD 486
+ S+ GDS S K +E D + LL +
Sbjct: 401 VNASD----------------------------GDSETNSGTAE---KATEFDTQELLKN 429
Query: 487 LEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAI-MIEKFWKFYQNEK 545
LEA+Y+++ + T E KDL +YL K+ FAGLE D P++ +++ W Y ++
Sbjct: 430 LEAKYHEVA-AETLESEKDLVSYLSLGKNEFFAGLE--EDSPDDTYRIVDNLWNGYPKDE 486
Query: 546 ESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYES-FSGDD 604
+ E KR R DD L+ + Y+S FS +
Sbjct: 487 DIEC----------LPKRGRDWDD------------------DVSLNQLSLYDSRFSDGN 518
Query: 605 YPQQSLNGDNSSKS-SEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIK 663
P S + N S S + +SE + +S E + + A+KRL DM ++ FCYI PRV++K
Sbjct: 519 NPCSSSSRRNESVSIGLDLSSSEHRESSSPEKLKEIAIKRLITDMGDDLFCYIPPRVKVK 578
Query: 664 RLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWLEKRI 723
RLDYLQYVRK ++GAL YAAHADYYILLR CA +A++D+R+MH VLSFERRLAW+EKRI
Sbjct: 579 RLDYLQYVRKKEDGALIYAAHADYYILLRVCAKVAEIDVRNMHRGVLSFERRLAWIEKRI 638
Query: 724 DHCLHLTPPSVTCRFCSD 741
D LHLT P +TC+ C D
Sbjct: 639 DQVLHLTRPLMTCKHCCD 656
>sp|Q5W770|TAF1B_ORYSJ TATA box-binding protein-associated factor RNA polymerase I subunit
B OS=Oryza sativa subsp. japonica GN=Os05g0352700 PE=3
SV=2
Length = 634
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/609 (36%), Positives = 335/609 (55%), Gaps = 98/609 (16%)
Query: 126 YTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLIC 185
+ D+ P+EP+DF + + ED VR +YV G+Q+++Q Q EALV++ V L
Sbjct: 100 FDDLGEPSEPRDFATGANAWGNPEDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAA 159
Query: 186 GVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHG--QRAV 243
+A +IW R++A++ + + W + + + S E + + +D+ L G Q++
Sbjct: 160 SLAGTIWLRWVAASKVFDEMWVHKMLAIAASVE------EGHSASKDKQSELEGDAQKSQ 213
Query: 244 ----MIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEK 299
++ + LR +P+ S+LA+ FLACHV RE ILPTDI +W++EGK+PY AAF +++K
Sbjct: 214 SSYEFLFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDK 273
Query: 300 RFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLC 359
G + C LS +FRP++ + + +LE+ A SIA+ IGL LP VNFY +A R+LK+L
Sbjct: 274 LLGSSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELS 333
Query: 360 LPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKS 419
LP+ KILP A +I EW+MP +LWLS+N R P+RVCVM+ILIV++R+LY ING G WE
Sbjct: 334 LPIEKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWES- 392
Query: 420 LSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELD 479
+ T N G DPE + +P S+ DSN NS F D
Sbjct: 393 ------IAQTENAVGS-DPEAS------------APHSIEPDSN-----NSEEF-----D 423
Query: 480 AEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWK 539
A LL L A Y+ I+ V ++YSK++ +YLKYCKDVVF G+ EE +I+ FW
Sbjct: 424 ARELLCTLAASYDKIN--VGHDYSKEVHSYLKYCKDVVFTGMT---FSLEEEHLIDIFWD 478
Query: 540 FYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYES 599
Y+ KE +++ K C EK+R
Sbjct: 479 MYKG-KEVMLLDENAKLC---------------------QEKLR---------------- 500
Query: 600 FSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPR 659
+ NG N + ++ + + + + A++ +K ME N FCY+SPR
Sbjct: 501 ---------TTNGVNKRCRDGRFADT----KCCSTPLGNCALQSIKSKMEENGFCYVSPR 547
Query: 660 VQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWL 719
++ YL Y R+ G+L Y AHADYYILLR A +A+VD+R +H +VL ERRL W+
Sbjct: 548 KRLVSDGYLLYTRRESSGSLIYVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWI 607
Query: 720 EKRIDHCLH 728
E+R+ L+
Sbjct: 608 EERVGRSLN 616
>sp|B8AX23|TAF1B_ORYSI TATA box-binding protein-associated factor RNA polymerase I subunit
B OS=Oryza sativa subsp. indica GN=OsI_19584 PE=3 SV=1
Length = 634
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 225/609 (36%), Positives = 334/609 (54%), Gaps = 98/609 (16%)
Query: 126 YTDMVGPTEPQDFGSSGPVKADYEDYHFEVRMKYVMGMQLMIQLQCEALVDKFNVCPLIC 185
+ D+ P+EP+DF + + ED VR +YV G+Q+++Q Q EALV++ V L
Sbjct: 100 FDDLGEPSEPRDFATGANAWGNPEDVAARVRWRYVRGLQVILQRQLEALVERHRVGSLAA 159
Query: 186 GVAASIWFRFLASTGLLSQGWADEAIVQSESQELESKDFQPRAKYRDEPHTLHG--QRAV 243
+A +IW R++A++ + + W + + + S E + + +D+ L G Q++
Sbjct: 160 SLAGTIWLRWVAASKVFDEMWVHKMLAIAASVE------EGHSASKDKQSELEGDAQKSQ 213
Query: 244 ----MIWYKLLRQKIPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYFAAFVEIEK 299
++ + LR +P+ S+LA+ FLACHV RE ILPTDI +W++EGK+PY AAF +++K
Sbjct: 214 SSYEFLFLRSLRMMLPVYSTLAVCFLACHVARETILPTDICRWAMEGKLPYVAAFTQVDK 273
Query: 300 RFGQTSVACSLSPSFMFRPSKSVPSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLC 359
G + C LS +FRP++ + + +LE+ A SIA+ IGL LP VNFY +A R+LK+L
Sbjct: 274 LLGSSLNDCPLSSRQLFRPTRVIGAWQLEAAAGSIAQKIGLLLPSVNFYLIAQRFLKELS 333
Query: 360 LPLGKILPRALKIQEWSMPPDLWLSTNECRFPTRVCVMSILIVSIRILYNINGFGAWEKS 419
LP+ KILP A +I EW+MP +LWLS+N R P+RVCVM+ILIV++R+LY ING G WE
Sbjct: 334 LPIEKILPHACRIYEWAMPAELWLSSNPGRVPSRVCVMAILIVALRVLYGINGQGIWES- 392
Query: 420 LSSRKFFSSTSNIGGKFDPECNSKMRDEVEEISCSPSSVIGDSNAKSSKNSSHFKESELD 479
+ T N G DPE + +P S+ DSN NS F D
Sbjct: 393 ------IAQTENAVGS-DPEAS------------APHSIEPDSN-----NSEEF-----D 423
Query: 480 AEALLYDLEARYNDIHDSVTYEYSKDLPTYLKYCKDVVFAGLEPPHDDPEEAIMIEKFWK 539
A LL L A Y+ I V ++YSK++ +YLKYCKDVVF G+ EE +I+ FW
Sbjct: 424 ARELLCTLAASYDKI--DVGHDYSKEVHSYLKYCKDVVFTGMT---FSLEEEHLIDIFWD 478
Query: 540 FYQNEKESEAAEDSGKRCGIASKRKRSRDDLSLGSHYKESEKIREKEFTTRLSASADYES 599
Y+ KE +++ K C EK+R
Sbjct: 479 MYKG-KEVMLLDENAKLC---------------------QEKLR---------------- 500
Query: 600 FSGDDYPQQSLNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPR 659
+ NG N + ++ + + + + A++ +K ME N FCY+SPR
Sbjct: 501 ---------TTNGVNKRCRDGRFADT----KCCSTPLGNCALQSIKSKMEENGFCYVSPR 547
Query: 660 VQIKRLDYLQYVRKSDEGALTYAAHADYYILLRACATIAQVDIRSMHMAVLSFERRLAWL 719
++ YL Y R+ G+L Y AHADYYILLR A +A+VD+R +H +VL ERRL W+
Sbjct: 548 KRLVSDGYLLYTRRESSGSLIYVAHADYYILLRPFAKLAEVDVRVLHSSVLKLERRLGWI 607
Query: 720 EKRIDHCLH 728
E+R+ L+
Sbjct: 608 EERVGRSLN 616
>sp|Q9UST5|RRN7_SCHPO RNA polymerase I-specific transcription initiation factor rrn7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rrn7 PE=1 SV=1
Length = 537
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 39/232 (16%)
Query: 156 RMKYVMGMQLMIQLQCEALVDKFNVCPLICGVAASIWFRFLA------STGLLSQGWADE 209
R Y+ Q+++QLQC+AL K I G+ +W +L+ ++ LS ++
Sbjct: 80 RSLYLQAFQIILQLQCQALTTKLGFDQRIEGMIRDLWALYLSLSYESFTSSFLS---LNQ 136
Query: 210 AIVQSESQELESKDFQPRAKYRDEP---HTLHGQRAVMIWYKLLRQKIPLSSSLAISFLA 266
QSES + + P ++ +P T ++ I Y L L SS A ++A
Sbjct: 137 NSTQSESSDSDFDLIDPESQPGADPSSRKTKETSQSHSISYPRL-----LYSS-AFIYVA 190
Query: 267 CHVVREAILPTDIVKWSI---EGKIPYFAAF----VEIEKRFGQTSVACSLSPSFMFRPS 319
C ++R LP I K + + IPY+ A+ ++I KR + V M P
Sbjct: 191 CLLLR---LPLTIHKLEVLIRKNIIPYYRAYKQIPLKIFKRLQKNYVR-------MLIPF 240
Query: 320 KSVPSQKLESFAASIAESI----GLHLPPVNFYALASRYLKQLCLPLGKILP 367
Q+++S ++ + + L +PP N + + PL +P
Sbjct: 241 HYPTYQRIQSAVLTLVDVLVSKYELKVPPPNEPLILFELINSFFFPLEIFIP 292
>sp|F1R3W0|TAF1B_DANRE TATA box-binding protein-associated factor RNA polymerase I subunit
B OS=Danio rerio GN=taf1b PE=2 SV=1
Length = 576
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 254 IPLSSSLAISFLACHVVREAILPTDIVKWSIEGKIPYF---AAFVEIEKRFGQ--TSVAC 308
+ + +LA+ +LA VREAI TD+++ EG IPY F + FG+
Sbjct: 194 MSMPRTLAMCYLALLWVREAITLTDLLRMVAEGHIPYLHLHETFPAEMRMFGKDVQIFRV 253
Query: 309 SLSPSFMFRPSKSV---PSQKLESFAASIAESIGLHLPPVNFYALASRYLKQLCLPLGKI 365
PS+ F +++ KL SF +I++ H P L RYL + LP
Sbjct: 254 LFFPSYAFIKKEALVLAKIMKLPSF-PTISQDCLFHPVP-----LTVRYLLEANLPDALH 307
Query: 366 LPRALKIQEWSMPPDLWLSTNECRFPT---------RVCVMSILIVSIRILYNINGFGAW 416
+ I M D +L+ + PT V ++++IV++++L+ ++ W
Sbjct: 308 VWVQKVITGAGMDSDSFLTFD----PTDKKPHLLSYDVQAVAVIIVAMKLLFKLDDHVEW 363
Query: 417 EKS 419
+ S
Sbjct: 364 KLS 366
>sp|Q9VH20|TAF1B_DROME TATA box-binding protein-associated factor RNA polymerase I
subunit B OS=Drosophila melanogaster GN=CG6241 PE=2
SV=1
Length = 872
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 8 IRRLKCKKCDNVGFECAYDGFYYCTHCNALDDEIVETGVADED-FMATGAGTGTA 61
+ + C C+ F+ +GFYYC C D+I + ED F T AG TA
Sbjct: 10 LENMHCDVCEGTTFQ-EREGFYYCVECGTQKDQIRAVDITAEDNFDDTAAGRYTA 63
>sp|Q6NRG5|NDOR1_XENLA NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis
GN=ndor1 PE=2 SV=1
Length = 600
Score = 37.0 bits (84), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 48 DEDFMATGAGTGTALYQASHARQVANSRPAN--HFVPLSQQSSF-----WSPLFDEPNTT 100
D + G GTG A ++A+ +VAN RP N F + F W L + T
Sbjct: 453 DTPVVMVGPGTGVAPFRAAIQERVANGRPGNCLFFGCRGKSKDFYFEKEWEDLGNRGYLT 512
Query: 101 TTTTTTANYNDLDSIIHRIKREEVSYTDMVG 131
T + + D + HRIK D++G
Sbjct: 513 LFTAFSRDQEDKIYVQHRIKENSKLLWDLIG 543
>sp|B1LBI1|KCY_THESQ Cytidylate kinase OS=Thermotoga sp. (strain RQ2) GN=cmk PE=3 SV=1
Length = 220
Score = 33.5 bits (75), Expect = 6.9, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 610 LNGDNSSKSSEEYPNSEAIDEASAETIIDSAVKRLKLDMENNRFCYISPRVQIKRLDYLQ 669
LN + ++ Y + + + +SAE I++A+K LK+D Y++ RV I DY +
Sbjct: 31 LNTGATYRAVAVYLHEKGLSPSSAEEEIENALKNLKID-------YVNGRVYINGKDYTE 83
Query: 670 YVRKSDEGAL 679
++ + G L
Sbjct: 84 KIQSPEAGVL 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,379,028
Number of Sequences: 539616
Number of extensions: 11959367
Number of successful extensions: 32163
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 32057
Number of HSP's gapped (non-prelim): 137
length of query: 770
length of database: 191,569,459
effective HSP length: 125
effective length of query: 645
effective length of database: 124,117,459
effective search space: 80055761055
effective search space used: 80055761055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)