Query 004181
Match_columns 770
No_of_seqs 551 out of 3897
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 18:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01862 putative voltage-gate 100.0 7.8E-79 1.7E-83 709.5 56.4 551 90-763 23-573 (574)
2 KOG0474 Cl- channel CLC-7 and 100.0 6.9E-70 1.5E-74 589.9 31.7 595 54-760 55-746 (762)
3 KOG0475 Cl- channel CLC-3 and 100.0 7.5E-69 1.6E-73 584.3 31.5 568 95-761 58-695 (696)
4 PRK01610 putative voltage-gate 100.0 5.7E-61 1.2E-65 535.4 43.7 410 90-562 3-413 (418)
5 cd01033 ClC_like Putative ClC 100.0 1.1E-58 2.4E-63 513.6 39.8 384 99-551 1-385 (388)
6 KOG0476 Cl- channel CLC-2 and 100.0 3.3E-60 7.2E-65 522.6 20.4 497 92-682 96-648 (931)
7 cd03684 ClC_3_like ClC-3-like 100.0 1.3E-57 2.9E-62 512.7 35.3 410 99-564 1-438 (445)
8 PRK05277 chloride channel prot 100.0 1.4E-56 3E-61 505.6 41.2 413 93-564 2-415 (438)
9 cd01031 EriC ClC chloride chan 100.0 7.4E-57 1.6E-61 503.1 38.5 400 98-562 1-400 (402)
10 COG0038 EriC Chloride channel 100.0 5E-55 1.1E-59 490.1 41.3 407 91-563 22-428 (443)
11 cd03685 ClC_6_like ClC-6-like 100.0 8.1E-56 1.7E-60 500.5 34.3 397 88-564 29-452 (466)
12 cd01034 EriC_like ClC chloride 100.0 5.8E-55 1.3E-59 485.3 37.5 387 103-560 1-390 (390)
13 cd01036 ClC_euk Chloride chann 100.0 1.6E-54 3.4E-59 484.7 32.4 388 99-560 1-416 (416)
14 PF00654 Voltage_CLC: Voltage 100.0 3.6E-54 7.9E-59 473.4 33.2 350 150-550 1-354 (355)
15 cd00400 Voltage_gated_ClC CLC 100.0 2.2E-53 4.7E-58 472.9 38.3 383 99-546 1-383 (383)
16 cd03683 ClC_1_like ClC-1-like 100.0 1.1E-53 2.4E-58 478.8 33.2 398 92-564 2-417 (426)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.2E-50 2.6E-55 448.6 38.9 368 95-550 2-372 (378)
18 PRK03655 putative ion channel 100.0 5.2E-50 1.1E-54 444.9 41.8 384 88-549 9-397 (414)
19 COG3448 CBS-domain-containing 99.8 1.4E-18 3E-23 175.6 14.4 252 499-764 109-375 (382)
20 PRK01862 putative voltage-gate 99.8 1.1E-17 2.5E-22 195.7 19.5 189 350-559 25-226 (574)
21 cd00400 Voltage_gated_ClC CLC 99.7 6.9E-17 1.5E-21 180.1 16.6 183 357-559 1-193 (383)
22 cd01031 EriC ClC chloride chan 99.7 1.4E-16 3E-21 178.6 16.5 183 356-558 1-193 (402)
23 PRK05277 chloride channel prot 99.7 8E-16 1.7E-20 174.2 20.1 189 351-558 2-203 (438)
24 COG2524 Predicted transcriptio 99.7 1.5E-16 3.3E-21 158.6 11.6 124 620-761 168-291 (294)
25 cd01033 ClC_like Putative ClC 99.7 9.4E-16 2E-20 170.7 19.4 182 89-330 202-386 (388)
26 cd01034 EriC_like ClC chloride 99.7 1.1E-15 2.5E-20 170.4 20.0 191 89-337 199-389 (390)
27 PRK01610 putative voltage-gate 99.6 3.5E-14 7.7E-19 159.3 19.9 191 88-338 217-411 (418)
28 cd03682 ClC_sycA_like ClC sycA 99.6 2.2E-14 4.8E-19 159.4 18.0 175 353-552 2-180 (378)
29 COG3620 Predicted transcriptio 99.5 2.7E-14 5.8E-19 132.6 10.1 123 622-762 63-185 (187)
30 PRK10892 D-arabinose 5-phospha 99.5 3.6E-14 7.8E-19 155.0 13.1 122 622-759 200-323 (326)
31 PRK11543 gutQ D-arabinose 5-ph 99.5 4.1E-14 8.8E-19 154.2 12.3 127 617-759 187-318 (321)
32 cd03685 ClC_6_like ClC-6-like 99.5 8.1E-14 1.8E-18 158.5 14.5 196 349-549 32-240 (466)
33 cd04603 CBS_pair_KefB_assoc Th 99.5 2.5E-13 5.5E-18 123.8 12.6 109 633-758 2-110 (111)
34 COG0038 EriC Chloride channel 99.5 6.7E-13 1.5E-17 149.8 18.2 145 390-554 67-217 (443)
35 cd04619 CBS_pair_6 The CBS dom 99.5 3.7E-13 8.1E-18 123.2 13.0 111 634-758 3-113 (114)
36 cd03683 ClC_1_like ClC-1-like 99.5 3.5E-13 7.6E-18 151.9 15.0 188 351-550 3-201 (426)
37 PRK07807 inosine 5-monophospha 99.5 4E-13 8.6E-18 152.0 14.3 125 616-761 81-205 (479)
38 cd04641 CBS_pair_28 The CBS do 99.5 5E-13 1.1E-17 123.4 12.5 118 633-758 2-119 (120)
39 cd01036 ClC_euk Chloride chann 99.5 3.4E-13 7.3E-18 151.6 13.2 191 357-552 1-202 (416)
40 cd04593 CBS_pair_EriC_assoc_ba 99.4 1E-12 2.2E-17 120.3 12.9 112 633-759 2-115 (115)
41 cd04617 CBS_pair_4 The CBS dom 99.4 9.7E-13 2.1E-17 121.2 12.6 113 633-758 2-117 (118)
42 cd04618 CBS_pair_5 The CBS dom 99.4 8.8E-13 1.9E-17 117.8 11.6 94 633-758 2-97 (98)
43 cd04630 CBS_pair_17 The CBS do 99.4 1.6E-12 3.5E-17 118.7 13.3 111 633-758 2-113 (114)
44 cd03684 ClC_3_like ClC-3-like 99.4 2.3E-12 5.1E-17 145.9 17.0 178 357-551 1-182 (445)
45 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.6E-12 3.4E-17 120.4 12.0 117 632-759 2-124 (124)
46 TIGR00400 mgtE Mg2+ transporte 99.4 1.1E-12 2.5E-17 148.8 13.3 128 621-769 128-260 (449)
47 PRK15094 magnesium/cobalt effl 99.4 1.9E-12 4E-17 138.5 13.3 125 621-763 64-191 (292)
48 COG4109 Predicted transcriptio 99.4 1E-12 2.3E-17 136.5 10.9 121 624-765 188-310 (432)
49 cd04605 CBS_pair_MET2_assoc Th 99.4 4.9E-12 1.1E-16 114.5 13.9 108 632-758 2-109 (110)
50 cd04608 CBS_pair_PALP_assoc Th 99.4 1.5E-12 3.3E-17 121.4 10.8 113 632-759 2-123 (124)
51 cd04639 CBS_pair_26 The CBS do 99.4 2.3E-12 5.1E-17 116.8 11.7 109 633-758 2-110 (111)
52 cd04801 CBS_pair_M50_like This 99.4 2.6E-12 5.7E-17 117.3 11.8 111 633-758 2-113 (114)
53 PRK03655 putative ion channel 99.4 1.3E-11 2.9E-16 137.9 19.8 176 350-551 13-202 (414)
54 cd04615 CBS_pair_2 The CBS dom 99.4 5.1E-12 1.1E-16 115.0 13.5 110 634-758 3-112 (113)
55 cd04607 CBS_pair_NTP_transfera 99.4 4.2E-12 9.1E-17 115.7 12.9 110 633-758 3-112 (113)
56 cd04627 CBS_pair_14 The CBS do 99.4 4.7E-12 1E-16 117.5 13.4 114 633-757 2-121 (123)
57 cd04614 CBS_pair_1 The CBS dom 99.4 3.3E-12 7.1E-17 113.6 11.5 94 633-758 2-95 (96)
58 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.9E-12 8.5E-17 115.0 11.8 106 632-758 2-107 (108)
59 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 7.1E-12 1.5E-16 113.0 13.5 107 632-758 2-108 (109)
60 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 6.7E-12 1.4E-16 112.8 13.2 105 632-758 1-105 (106)
61 cd04624 CBS_pair_11 The CBS do 99.4 6.3E-12 1.4E-16 114.2 13.1 110 633-758 2-111 (112)
62 cd04623 CBS_pair_10 The CBS do 99.4 8E-12 1.7E-16 113.3 13.7 111 633-758 2-112 (113)
63 cd04642 CBS_pair_29 The CBS do 99.4 5.5E-12 1.2E-16 117.6 12.5 115 633-758 2-125 (126)
64 cd04803 CBS_pair_15 The CBS do 99.4 5.1E-12 1.1E-16 116.6 12.1 115 633-758 2-121 (122)
65 TIGR03520 GldE gliding motilit 99.4 4.9E-12 1.1E-16 141.6 14.2 122 620-761 187-311 (408)
66 cd04631 CBS_pair_18 The CBS do 99.4 4.6E-12 1E-16 117.4 11.7 115 633-758 2-124 (125)
67 cd04629 CBS_pair_16 The CBS do 99.4 5.7E-12 1.2E-16 114.7 12.0 112 633-758 2-113 (114)
68 cd04626 CBS_pair_13 The CBS do 99.4 8E-12 1.7E-16 113.4 12.8 109 633-758 2-110 (111)
69 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 6.3E-12 1.4E-16 114.2 12.1 112 633-758 2-113 (114)
70 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 6.5E-12 1.4E-16 114.2 12.2 111 633-758 3-113 (114)
71 cd04590 CBS_pair_CorC_HlyC_ass 99.4 8.1E-12 1.8E-16 113.2 12.8 108 633-758 2-110 (111)
72 cd04621 CBS_pair_8 The CBS dom 99.4 7.3E-12 1.6E-16 118.7 12.7 114 633-758 2-134 (135)
73 cd04635 CBS_pair_22 The CBS do 99.4 4.7E-12 1E-16 116.9 11.0 115 633-758 2-121 (122)
74 cd04640 CBS_pair_27 The CBS do 99.4 6.7E-12 1.5E-16 117.1 12.2 115 633-758 2-125 (126)
75 cd04643 CBS_pair_30 The CBS do 99.4 7E-12 1.5E-16 114.5 12.1 114 633-759 2-116 (116)
76 cd04632 CBS_pair_19 The CBS do 99.3 1.1E-11 2.5E-16 115.6 13.1 117 633-758 2-127 (128)
77 cd04620 CBS_pair_7 The CBS dom 99.3 8.8E-12 1.9E-16 113.9 12.0 110 633-758 2-114 (115)
78 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.4E-11 3E-16 111.5 12.9 108 633-758 2-109 (110)
79 cd04586 CBS_pair_BON_assoc Thi 99.3 5.9E-12 1.3E-16 118.8 10.9 115 632-758 2-134 (135)
80 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.7E-11 3.7E-16 111.0 13.1 108 632-758 2-109 (110)
81 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1.9E-11 4.2E-16 110.8 13.3 109 633-758 2-110 (111)
82 COG2905 Predicted signal-trans 99.3 5.2E-12 1.1E-16 139.2 10.9 123 623-761 148-270 (610)
83 cd04587 CBS_pair_CAP-ED_DUF294 99.3 1.4E-11 2.9E-16 112.0 11.8 111 633-758 2-112 (113)
84 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.1E-11 2.3E-16 140.3 13.4 122 618-761 82-203 (475)
85 cd04625 CBS_pair_12 The CBS do 99.3 2.3E-11 5.1E-16 110.4 13.3 110 633-758 2-111 (112)
86 PRK07107 inosine 5-monophospha 99.3 7.2E-12 1.6E-16 142.7 12.0 119 625-760 95-219 (502)
87 cd04800 CBS_pair_CAP-ED_DUF294 99.3 2.1E-11 4.6E-16 110.5 12.8 110 632-758 1-110 (111)
88 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.7E-11 3.8E-16 112.6 12.4 114 633-758 2-121 (122)
89 cd04622 CBS_pair_9 The CBS dom 99.3 1.8E-11 3.9E-16 111.2 12.3 111 633-758 2-112 (113)
90 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 2.1E-11 4.5E-16 110.3 12.6 109 633-758 2-110 (111)
91 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 2E-11 4.3E-16 110.5 12.1 109 633-758 2-110 (111)
92 TIGR01137 cysta_beta cystathio 99.3 1.6E-11 3.4E-16 140.4 14.1 125 618-760 329-453 (454)
93 cd04636 CBS_pair_23 The CBS do 99.3 2.1E-11 4.5E-16 114.6 12.6 114 633-758 2-131 (132)
94 cd04602 CBS_pair_IMPDH_2 This 99.3 2.1E-11 4.5E-16 111.5 12.1 106 633-758 3-113 (114)
95 TIGR00393 kpsF KpsF/GutQ famil 99.3 9.3E-12 2E-16 132.1 11.3 114 623-752 154-268 (268)
96 PF00654 Voltage_CLC: Voltage 99.3 2.5E-11 5.4E-16 134.0 13.7 147 395-560 1-151 (355)
97 cd04637 CBS_pair_24 The CBS do 99.3 3.8E-11 8.3E-16 110.8 12.8 114 633-758 2-121 (122)
98 cd04601 CBS_pair_IMPDH This cd 99.3 2.3E-11 5E-16 109.8 11.0 107 632-758 2-109 (110)
99 cd04606 CBS_pair_Mg_transporte 99.3 2.1E-11 4.5E-16 110.4 10.6 102 637-759 2-108 (109)
100 cd04802 CBS_pair_3 The CBS dom 99.3 5.9E-11 1.3E-15 107.7 13.6 110 633-758 2-111 (112)
101 PLN02274 inosine-5'-monophosph 99.3 2.9E-11 6.3E-16 138.0 14.1 118 627-762 103-223 (505)
102 cd04584 CBS_pair_ACT_assoc Thi 99.3 4.4E-11 9.5E-16 110.1 12.5 114 633-758 2-120 (121)
103 cd04633 CBS_pair_20 The CBS do 99.3 3.7E-11 8E-16 110.7 11.9 113 633-758 2-120 (121)
104 TIGR01302 IMP_dehydrog inosine 99.3 3.1E-11 6.7E-16 136.9 13.6 122 621-761 77-201 (450)
105 cd04599 CBS_pair_GGDEF_assoc2 99.3 5.4E-11 1.2E-15 106.5 12.5 103 633-758 2-104 (105)
106 cd04591 CBS_pair_EriC_assoc_eu 99.3 5.6E-11 1.2E-15 107.4 12.5 99 633-758 3-104 (105)
107 cd04610 CBS_pair_ParBc_assoc T 99.3 4.6E-11 9.9E-16 107.4 11.8 105 632-758 2-106 (107)
108 cd04594 CBS_pair_EriC_assoc_ar 99.3 5.5E-11 1.2E-15 106.9 12.3 100 635-758 4-103 (104)
109 COG2239 MgtE Mg/Co/Ni transpor 99.3 2.5E-11 5.3E-16 135.3 11.4 125 624-769 132-261 (451)
110 cd04609 CBS_pair_PALP_assoc2 T 99.2 6E-11 1.3E-15 107.0 11.7 108 633-758 2-109 (110)
111 COG0517 FOG: CBS domain [Gener 99.2 9.7E-11 2.1E-15 107.0 12.9 113 628-757 3-117 (117)
112 PRK05567 inosine 5'-monophosph 99.2 5.3E-11 1.2E-15 136.4 13.3 118 624-761 87-205 (486)
113 cd02205 CBS_pair The CBS domai 99.2 1.7E-10 3.7E-15 103.4 13.4 111 633-758 2-112 (113)
114 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.3E-10 2.8E-15 106.7 12.0 113 633-758 2-118 (119)
115 PTZ00314 inosine-5'-monophosph 99.2 8E-11 1.7E-15 134.4 12.8 119 624-760 96-217 (495)
116 cd04634 CBS_pair_21 The CBS do 99.2 2.2E-10 4.8E-15 109.5 12.7 113 633-758 2-142 (143)
117 cd04638 CBS_pair_25 The CBS do 99.2 4.2E-10 9E-15 101.2 13.1 104 633-758 2-105 (106)
118 PRK11573 hypothetical protein; 99.2 2.8E-10 6.1E-15 127.6 14.0 127 620-762 183-312 (413)
119 cd04592 CBS_pair_EriC_assoc_eu 99.1 2.6E-10 5.7E-15 107.9 11.1 108 633-740 2-119 (133)
120 PRK14869 putative manganese-de 99.1 1.9E-10 4.2E-15 134.3 12.2 128 624-761 68-304 (546)
121 COG1253 TlyC Hemolysins and re 99.0 2.2E-09 4.8E-14 121.4 14.0 125 620-762 202-329 (429)
122 COG4536 CorB Putative Mg2+ and 98.9 4.7E-09 1E-13 110.9 9.5 126 621-762 197-325 (423)
123 PF00571 CBS: CBS domain CBS d 98.7 3.4E-08 7.5E-13 78.5 7.2 56 626-681 1-56 (57)
124 PF00571 CBS: CBS domain CBS d 98.7 4.5E-08 9.8E-13 77.9 6.6 56 695-761 1-56 (57)
125 KOG1764 5'-AMP-activated prote 98.7 9.2E-08 2E-12 105.7 11.2 123 633-763 238-361 (381)
126 COG4535 CorC Putative Mg2+ and 98.7 4.4E-08 9.5E-13 97.3 7.2 126 621-764 64-192 (293)
127 TIGR01186 proV glycine betaine 98.6 2.5E-07 5.4E-12 102.0 13.5 113 630-763 248-360 (363)
128 PRK10070 glycine betaine trans 98.6 2.7E-07 5.8E-12 103.0 12.9 119 623-762 273-394 (400)
129 KOG2550 IMP dehydrogenase/GMP 98.5 1.9E-07 4.1E-12 99.5 7.0 108 632-759 116-226 (503)
130 TIGR00400 mgtE Mg2+ transporte 98.5 1.2E-07 2.5E-12 108.1 4.6 118 623-766 194-311 (449)
131 COG3448 CBS-domain-containing 98.3 1.3E-06 2.9E-11 89.6 7.7 99 638-759 200-300 (382)
132 KOG0474 Cl- channel CLC-7 and 98.2 2.4E-06 5.3E-11 95.6 7.7 188 350-550 88-301 (762)
133 COG2524 Predicted transcriptio 98.1 5.5E-06 1.2E-10 83.8 6.0 78 604-681 214-291 (294)
134 cd04603 CBS_pair_KefB_assoc Th 98.0 6E-06 1.3E-10 74.9 5.2 55 624-678 56-110 (111)
135 PRK14869 putative manganese-de 98.0 2E-06 4.4E-11 100.7 2.3 130 618-759 240-391 (546)
136 cd04597 CBS_pair_DRTGG_assoc2 98.0 1E-05 2.2E-10 74.1 5.5 55 624-678 58-112 (113)
137 PRK05567 inosine 5'-monophosph 97.9 2.9E-05 6.4E-10 89.3 9.4 117 623-757 146-263 (486)
138 COG3620 Predicted transcriptio 97.8 3.3E-05 7.2E-10 72.8 6.5 60 691-762 63-122 (187)
139 cd04619 CBS_pair_6 The CBS dom 97.8 2.9E-05 6.2E-10 70.7 6.1 57 622-678 57-113 (114)
140 KOG0476 Cl- channel CLC-2 and 97.8 7.1E-05 1.5E-09 85.7 9.8 171 348-530 94-274 (931)
141 TIGR01303 IMP_DH_rel_1 IMP deh 97.7 0.00025 5.5E-09 80.8 12.2 58 624-681 146-203 (475)
142 PRK07807 inosine 5-monophospha 97.7 0.00019 4.2E-09 81.9 11.0 100 624-738 148-247 (479)
143 cd04597 CBS_pair_DRTGG_assoc2 97.7 6.7E-05 1.4E-09 68.7 6.0 55 693-758 58-112 (113)
144 KOG0475 Cl- channel CLC-3 and 97.7 0.00014 3.1E-09 82.0 9.1 213 72-329 289-515 (696)
145 cd04620 CBS_pair_7 The CBS dom 97.6 0.0001 2.2E-09 66.9 6.4 56 623-678 57-114 (115)
146 cd04607 CBS_pair_NTP_transfera 97.6 0.00011 2.3E-09 66.6 6.4 55 623-677 57-111 (113)
147 cd04600 CBS_pair_HPP_assoc Thi 97.6 8.8E-05 1.9E-09 68.2 5.7 57 622-678 67-123 (124)
148 cd04627 CBS_pair_14 The CBS do 97.6 0.00012 2.6E-09 67.4 6.6 53 626-678 70-122 (123)
149 cd04615 CBS_pair_2 The CBS dom 97.6 0.00014 2.9E-09 65.8 6.5 58 621-678 55-112 (113)
150 cd04596 CBS_pair_DRTGG_assoc T 97.6 0.00013 2.9E-09 65.4 6.2 56 623-678 52-107 (108)
151 cd04617 CBS_pair_4 The CBS dom 97.6 9.6E-05 2.1E-09 67.7 5.3 57 622-678 56-117 (118)
152 KOG1764 5'-AMP-activated prote 97.6 0.0003 6.4E-09 78.1 10.0 121 633-761 163-286 (381)
153 cd04630 CBS_pair_17 The CBS do 97.6 0.00012 2.6E-09 66.4 5.7 56 622-678 58-113 (114)
154 PRK07107 inosine 5-monophospha 97.6 0.00025 5.4E-09 81.4 9.4 59 622-680 159-219 (502)
155 cd04585 CBS_pair_ACT_assoc2 Th 97.5 0.00016 3.6E-09 65.8 6.4 57 622-678 65-121 (122)
156 cd04606 CBS_pair_Mg_transporte 97.5 0.00016 3.4E-09 65.1 6.1 57 623-679 52-108 (109)
157 cd04610 CBS_pair_ParBc_assoc T 97.5 0.00018 3.9E-09 64.1 6.4 56 623-678 51-106 (107)
158 cd04611 CBS_pair_PAS_GGDEF_DUF 97.5 0.00016 3.6E-09 64.8 6.1 57 622-678 54-110 (111)
159 cd04639 CBS_pair_26 The CBS do 97.5 0.00016 3.4E-09 65.1 5.9 55 624-678 56-110 (111)
160 cd04604 CBS_pair_KpsF_GutQ_ass 97.5 0.0002 4.3E-09 64.6 6.5 55 624-678 59-113 (114)
161 cd04801 CBS_pair_M50_like This 97.5 0.00012 2.7E-09 66.3 4.9 56 623-678 56-113 (114)
162 cd04641 CBS_pair_28 The CBS do 97.5 0.00018 4E-09 65.9 6.1 53 626-678 67-119 (120)
163 cd04625 CBS_pair_12 The CBS do 97.5 0.0002 4.3E-09 64.5 6.0 55 623-678 57-111 (112)
164 cd04595 CBS_pair_DHH_polyA_Pol 97.5 0.00019 4.2E-09 64.5 5.8 56 622-678 54-109 (110)
165 cd04582 CBS_pair_ABC_OpuCA_ass 97.5 0.00025 5.5E-09 63.1 6.5 54 625-678 52-105 (106)
166 cd04583 CBS_pair_ABC_OpuCA_ass 97.5 0.00024 5.2E-09 63.5 6.3 55 624-678 54-108 (109)
167 cd04803 CBS_pair_15 The CBS do 97.5 0.00022 4.8E-09 65.3 6.1 57 622-678 65-121 (122)
168 cd04635 CBS_pair_22 The CBS do 97.5 0.0002 4.2E-09 65.7 5.7 57 622-678 65-121 (122)
169 cd04588 CBS_pair_CAP-ED_DUF294 97.5 0.00023 4.9E-09 63.9 6.1 55 624-678 55-109 (110)
170 PLN02274 inosine-5'-monophosph 97.5 0.00061 1.3E-08 78.4 10.9 61 622-682 161-223 (505)
171 cd04587 CBS_pair_CAP-ED_DUF294 97.5 0.00017 3.7E-09 65.0 5.1 55 624-678 58-112 (113)
172 cd04602 CBS_pair_IMPDH_2 This 97.4 0.00025 5.4E-09 64.4 6.2 55 624-678 57-113 (114)
173 cd04601 CBS_pair_IMPDH This cd 97.4 0.0003 6.5E-09 63.0 6.4 56 623-678 53-109 (110)
174 PTZ00314 inosine-5'-monophosph 97.4 0.00054 1.2E-08 78.8 9.9 59 623-681 158-218 (495)
175 cd04631 CBS_pair_18 The CBS do 97.4 0.00023 5E-09 65.5 5.7 56 623-678 69-124 (125)
176 cd04593 CBS_pair_EriC_assoc_ba 97.4 0.00024 5.3E-09 64.4 5.8 55 624-678 58-114 (115)
177 cd04622 CBS_pair_9 The CBS dom 97.4 0.00027 5.8E-09 63.7 5.7 55 624-678 58-112 (113)
178 cd04618 CBS_pair_5 The CBS dom 97.4 0.00027 5.8E-09 62.9 5.4 45 634-678 52-97 (98)
179 cd04621 CBS_pair_8 The CBS dom 97.4 0.00036 7.9E-09 65.9 6.5 55 623-678 80-134 (135)
180 cd04623 CBS_pair_10 The CBS do 97.4 0.00034 7.4E-09 62.9 5.9 55 623-678 58-112 (113)
181 smart00116 CBS Domain in cysta 97.4 0.00055 1.2E-08 50.8 6.1 47 709-760 2-48 (49)
182 cd04605 CBS_pair_MET2_assoc Th 97.4 0.00043 9.3E-09 62.1 6.5 54 625-678 56-109 (110)
183 cd04636 CBS_pair_23 The CBS do 97.3 0.00038 8.2E-09 65.0 6.3 57 621-678 75-131 (132)
184 cd04640 CBS_pair_27 The CBS do 97.3 0.00022 4.8E-09 66.1 4.6 57 622-678 62-125 (126)
185 cd04586 CBS_pair_BON_assoc Thi 97.3 0.00026 5.7E-09 66.4 5.0 56 622-678 79-134 (135)
186 cd04629 CBS_pair_16 The CBS do 97.3 0.00027 6E-09 63.7 4.9 55 623-678 59-113 (114)
187 cd04802 CBS_pair_3 The CBS dom 97.3 0.00043 9.3E-09 62.3 6.1 56 622-678 56-111 (112)
188 cd04626 CBS_pair_13 The CBS do 97.3 0.00037 7.9E-09 62.8 5.6 55 623-678 56-110 (111)
189 cd04612 CBS_pair_SpoIVFB_EriC_ 97.3 0.00049 1.1E-08 61.7 6.4 55 624-678 56-110 (111)
190 cd04613 CBS_pair_SpoIVFB_EriC_ 97.3 0.00038 8.2E-09 62.7 5.7 56 623-678 57-113 (114)
191 PRK11543 gutQ D-arabinose 5-ph 97.3 0.00039 8.5E-09 75.8 6.8 57 623-679 262-318 (321)
192 cd04643 CBS_pair_30 The CBS do 97.3 0.00032 6.9E-09 63.5 5.1 54 623-678 62-115 (116)
193 cd04633 CBS_pair_20 The CBS do 97.3 0.0003 6.5E-09 64.3 5.0 57 621-678 64-120 (121)
194 cd04800 CBS_pair_CAP-ED_DUF294 97.3 0.00044 9.5E-09 62.2 5.8 55 623-678 56-110 (111)
195 cd04589 CBS_pair_CAP-ED_DUF294 97.3 0.00042 9E-09 62.4 5.7 55 623-678 56-110 (111)
196 cd04642 CBS_pair_29 The CBS do 97.3 0.00054 1.2E-08 63.4 6.6 52 627-678 74-125 (126)
197 smart00116 CBS Domain in cysta 97.3 0.00074 1.6E-08 50.1 6.0 47 634-680 2-48 (49)
198 cd04624 CBS_pair_11 The CBS do 97.3 0.00054 1.2E-08 61.7 6.3 56 623-678 56-111 (112)
199 cd04599 CBS_pair_GGDEF_assoc2 97.3 0.00049 1.1E-08 61.1 5.8 53 624-677 51-103 (105)
200 cd04637 CBS_pair_24 The CBS do 97.3 0.00046 1E-08 63.2 5.7 55 624-678 67-121 (122)
201 PRK15094 magnesium/cobalt effl 97.2 0.00076 1.6E-08 72.5 7.9 96 624-726 133-228 (292)
202 TIGR01302 IMP_dehydrog inosine 97.2 0.0022 4.7E-08 73.3 11.6 59 623-681 142-201 (450)
203 cd04594 CBS_pair_EriC_assoc_ar 97.2 0.00063 1.4E-08 60.7 5.8 53 625-678 51-103 (104)
204 PRK10892 D-arabinose 5-phospha 97.2 0.00057 1.2E-08 74.8 6.5 57 622-679 267-323 (326)
205 cd04592 CBS_pair_EriC_assoc_eu 97.2 0.0012 2.5E-08 62.4 7.6 49 708-761 2-50 (133)
206 cd04584 CBS_pair_ACT_assoc Thi 97.2 0.00076 1.6E-08 61.5 6.0 57 621-678 64-120 (121)
207 cd04590 CBS_pair_CorC_HlyC_ass 97.1 0.00071 1.5E-08 60.8 5.5 54 624-678 57-110 (111)
208 cd04632 CBS_pair_19 The CBS do 97.1 0.00084 1.8E-08 62.2 6.0 57 622-678 69-127 (128)
209 cd04614 CBS_pair_1 The CBS dom 97.1 0.0011 2.4E-08 58.5 6.4 47 708-759 2-48 (96)
210 TIGR03415 ABC_choXWV_ATP choli 97.1 0.0013 2.9E-08 73.1 8.3 112 619-761 269-380 (382)
211 TIGR03520 GldE gliding motilit 97.1 0.0013 2.8E-08 74.1 8.3 96 624-727 255-350 (408)
212 COG0517 FOG: CBS domain [Gener 97.1 0.00096 2.1E-08 60.4 5.9 52 625-676 63-116 (117)
213 cd04598 CBS_pair_GGDEF_assoc T 97.0 0.0011 2.3E-08 60.4 5.8 57 622-678 59-118 (119)
214 COG4175 ProV ABC-type proline/ 97.0 0.00091 2E-08 70.5 5.7 115 617-761 267-383 (386)
215 COG4109 Predicted transcriptio 97.0 0.0014 3E-08 69.5 6.7 66 619-684 244-309 (432)
216 cd04608 CBS_pair_PALP_assoc Th 97.0 0.0024 5.3E-08 59.2 7.7 50 708-762 3-52 (124)
217 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.0014 3.1E-08 58.8 5.6 49 629-678 56-104 (105)
218 cd04609 CBS_pair_PALP_assoc2 T 96.9 0.0013 2.9E-08 58.6 5.0 54 623-678 56-109 (110)
219 COG2239 MgtE Mg/Co/Ni transpor 96.9 0.0015 3.2E-08 73.7 6.1 63 622-684 194-256 (451)
220 cd02205 CBS_pair The CBS domai 96.8 0.0024 5.3E-08 56.5 5.9 53 626-678 60-112 (113)
221 TIGR01137 cysta_beta cystathio 96.8 0.0028 6E-08 72.7 7.3 61 690-761 332-392 (454)
222 cd04634 CBS_pair_21 The CBS do 96.7 0.0029 6.3E-08 60.2 6.0 56 622-678 87-142 (143)
223 TIGR00393 kpsF KpsF/GutQ famil 96.7 0.0028 6.1E-08 67.2 6.1 57 693-760 155-212 (268)
224 cd04638 CBS_pair_25 The CBS do 96.7 0.0034 7.3E-08 55.9 5.7 54 624-678 52-105 (106)
225 COG2905 Predicted signal-trans 96.4 0.0047 1E-07 69.6 6.0 61 620-681 210-270 (610)
226 TIGR01186 proV glycine betaine 96.2 0.0096 2.1E-07 66.0 7.0 57 624-681 302-358 (363)
227 PRK11573 hypothetical protein; 96.1 0.02 4.3E-07 64.7 8.7 63 690-760 184-246 (413)
228 PRK10070 glycine betaine trans 95.3 0.039 8.5E-07 62.0 7.2 57 624-681 337-393 (400)
229 KOG2550 IMP dehydrogenase/GMP 95.0 0.057 1.2E-06 58.7 7.0 58 623-680 170-227 (503)
230 COG1253 TlyC Hemolysins and re 95.0 0.079 1.7E-06 60.3 8.6 87 633-726 280-367 (429)
231 COG4536 CorB Putative Mg2+ and 93.1 0.27 5.9E-06 53.3 7.6 87 633-726 276-362 (423)
232 COG4535 CorC Putative Mg2+ and 93.1 0.022 4.7E-07 57.6 -0.5 96 642-762 33-128 (293)
233 COG1125 OpuBA ABC-type proline 91.2 1.4 3.1E-05 45.8 9.7 106 641-759 194-308 (309)
234 TIGR03415 ABC_choXWV_ATP choli 88.6 0.73 1.6E-05 51.5 5.9 55 624-681 326-380 (382)
235 KOG2118 Predicted membrane pro 88.5 0.73 1.6E-05 53.2 5.9 128 618-762 198-329 (498)
236 COG1125 OpuBA ABC-type proline 85.3 0.88 1.9E-05 47.3 3.8 59 620-678 245-307 (309)
237 COG4175 ProV ABC-type proline/ 80.2 2.8 6.1E-05 45.0 5.2 52 629-681 332-383 (386)
238 TIGR02865 spore_II_E stage II 57.4 1.8E+02 0.0039 35.9 14.6 20 497-516 215-234 (764)
239 PRK09765 PTS system 2-O-a-mann 44.9 1.3E+02 0.0027 36.3 10.4 26 270-296 525-551 (631)
240 TIGR01148 mtrC N5-methyltetrah 42.2 2.3E+02 0.005 29.6 10.2 53 463-515 106-158 (265)
241 PRK01030 tetrahydromethanopter 41.1 4.2E+02 0.0092 27.8 11.9 58 458-515 93-152 (264)
242 PF01102 Glycophorin_A: Glycop 39.4 45 0.00098 31.0 4.3 17 351-367 66-82 (122)
243 PRK11388 DNA-binding transcrip 27.0 1.1E+02 0.0023 36.9 6.0 97 643-752 61-162 (638)
244 COG2216 KdpB High-affinity K+ 25.5 1.1E+02 0.0023 35.4 5.1 39 715-759 412-450 (681)
245 PF10518 TAT_signal: TAT (twin 25.2 28 0.00061 23.0 0.4 23 265-287 3-25 (26)
246 PF04211 MtrC: Tetrahydrometha 24.5 8.4E+02 0.018 25.7 12.5 17 353-369 19-35 (262)
247 PRK01844 hypothetical protein; 23.7 1.5E+02 0.0033 24.8 4.3 19 351-369 7-25 (72)
248 PRK10490 sensor protein KdpD; 22.9 2.8E+02 0.006 34.9 8.7 53 316-369 448-500 (895)
249 PRK10026 arsenate reductase; P 21.4 3.8E+02 0.0082 25.6 7.3 107 634-760 6-116 (141)
250 PF13303 PTS_EIIC_2: Phosphotr 20.8 9.5E+02 0.021 26.4 11.1 74 316-403 96-169 (327)
No 1
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=7.8e-79 Score=709.51 Aligned_cols=551 Identities=26% Similarity=0.409 Sum_probs=452.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004181 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (770)
Q Consensus 90 ~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~ 169 (770)
.++++++++|+++|+++.+|+.++++.++++|+..++. ..+.. ..+|++.+++|++||+++++++++....++
T Consensus 23 ~~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~p~~ggli~~~~~~~~~~~~~-- 95 (574)
T PRK01862 23 TMLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSF-VEMAK----SLPWYVRVWLPAAGGFLAGCVLLLANRGAR-- 95 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH-HHHhh----cccHHHHHHHHHHHHHHHHHHHHHhccccc--
Confidence 36788999999999999999999999999998753211 11111 135666788999999999988654432211
Q ss_pred CCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 004181 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (770)
Q Consensus 170 ~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga 249 (770)
+ +++.+.+...... .+...++..+.|.+++++++++|+|+|||||++|+|+
T Consensus 96 ~-~g~~~~~~~~~~~----------------------------~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga 146 (574)
T PRK01862 96 K-GGKTDYMEAVALG----------------------------DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAA 146 (574)
T ss_pred c-CCcHHHHHHHHcC----------------------------CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHH
Confidence 1 2233332211000 1111234567799999999999999999999999999
Q ss_pred HHHHHHHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 004181 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (770)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~ 329 (770)
++|++++++++++++++|.+++||+|||+||+||||++|++|++|+++.+ ++.+.+.+ ++++|++|+++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~-------~~~~~~~~-~~~as~~a~~v~~~ 218 (574)
T PRK01862 147 LAASLVGRFAHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGS-------IAMESFGP-LVVASVVANIVMRE 218 (574)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhh-------ccHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764 23355544 78899999999999
Q ss_pred hcCCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcc
Q 004181 330 GLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE 409 (770)
Q Consensus 330 ~~g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~ 409 (770)
+.|+++.|.++.++..+..++++++++|++||++|.+|+++..+..+++++ .+.+.+++++++|+++|++.+++|+
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~----~~~~~~~~~~~~gl~~g~l~~~~p~ 294 (574)
T PRK01862 219 FAGYQPPYEMPVFPAVTGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKR----LPVPLPVRLALGGLLVGVISVWVPE 294 (574)
T ss_pred HcCCCceeeCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHH
Confidence 899999999886665567889999999999999999999988776554433 3445677889999999999999999
Q ss_pred cccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCcc
Q 004181 410 ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTI 489 (770)
Q Consensus 410 ~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~ 489 (770)
.+|+||+.++.++++. .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|++++.++|.
T Consensus 295 ~~g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~----- 364 (574)
T PRK01862 295 VWGNGYSVVNTILHAP-----WTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPG----- 364 (574)
T ss_pred HhcCCHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 9999999999988653 345566778899999999999999999999999999999999999999876654
Q ss_pred ccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhHHHhhhcc
Q 004181 490 HFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANT 569 (770)
Q Consensus 490 ~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~~~~~~~ 569 (770)
....|..|+++||||++++++|+|+|++++++|+|++++.++|+|+++++|+++++. ++.+++|+.......
T Consensus 365 -----~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~-~~~~~iy~~~~~~~~-- 436 (574)
T PRK01862 365 -----HTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARA-LGTTSMYEITLRRHQ-- 436 (574)
T ss_pred -----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCChHHHHHHhcc--
Confidence 234578899999999999999999999999999999999999999999999988864 467888886532100
Q ss_pred ccccchhhhccccccCCcccccccchhhhhccccccccccccccchhhhhhccccccccccccceeEEeCCCCHHHHHHH
Q 004181 570 NRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTL 649 (770)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~dll~~~~~~~~~l~~~~s~~~l~d~~~~~~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~ 649 (770)
.+.+.+.+++++|+|+|+++..+++++++++|+.+.
T Consensus 437 --------------------------------------------~~~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~ 472 (574)
T PRK01862 437 --------------------------------------------DEAERERLRTTQMRELIQPAQTVVPPTASVADMTRV 472 (574)
T ss_pred --------------------------------------------ccchhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHH
Confidence 002345688899999999999999999999999999
Q ss_pred HHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcC
Q 004181 650 MLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYG 729 (770)
Q Consensus 650 m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~ 729 (770)
|.+++.+.+||+|++++++|+|+.+|+.+...+.+ ...+.+++|+|++ ++.++++|++++|++++|.+++
T Consensus 473 l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~----~~~~~~v~dim~~------~~~~v~~d~~L~~al~~m~~~~ 542 (574)
T PRK01862 473 FLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR----DTTDKTAADYAHT------PFPLLTPDMPLGDALEHFMAFQ 542 (574)
T ss_pred HHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc----ccccchHHHhccC------CCeeECCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999987653211 1233568889987 7889999999999999999999
Q ss_pred CCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHH
Q 004181 730 VNQVPVVMEHIPGQRGQLVGLLDRESIILACRAL 763 (770)
Q Consensus 730 ~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~ 763 (770)
.+.+||+|+++ +++++|+||++|+++++++.
T Consensus 543 ~~~lpVVd~~~---~~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 543 GERLPVVESEA---SPTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred CCeeeeEeCCC---CCeEEEEEEHHHHHHHHHhh
Confidence 99999999610 25899999999999998764
No 2
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-70 Score=589.89 Aligned_cols=595 Identities=20% Similarity=0.260 Sum_probs=435.8
Q ss_pred cCccccccCCCCChhhhhccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccc
Q 004181 54 TKSLRLRPLGALPENERNRKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLR 133 (770)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~ 133 (770)
-+|+||.+ -||+-.+++|.-.+=. .-...+...|.++++||+.+|+++.+.+..++.+..+++..+........
T Consensus 55 yESLDYei----~ENdlf~e~~r~~~k~-~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~- 128 (762)
T KOG0474|consen 55 YESLDYEI----CENDLFLEDWRTRDKK-KGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECR- 128 (762)
T ss_pred ccccchhh----hcchHHHHHHHhhccc-ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhh-
Confidence 67888887 5666555544322211 12234556788999999999999999999999999888876532111110
Q ss_pred cCCCchhHHHHHH---HHHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCcc
Q 004181 134 EKPIPAIWIRVVL---VPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTI 210 (770)
Q Consensus 134 ~~~~~~~~~~~~l---~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 210 (770)
...+..|..++. .-.+--++.+++..+ . .+...|+||||+|. |.|+ ..+|
T Consensus 129 -s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~--i--aP~AAGSGIPevK~--YLNG------------------V~iP-- 181 (762)
T KOG0474|consen 129 -SQKGCLALSLLVLLGFNLVLVFLASVLVAY--I--APVAAGSGIPEVKC--YLNG------------------VKIP-- 181 (762)
T ss_pred -hccccHHHHHHHHHHHhHHHHHHHHHHHHe--e--chhccCCCCchhhh--hhcC------------------ccCc--
Confidence 011113322211 111111222222211 1 44567888999996 6553 2344
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh-----------hcc--CCccchhhHhhcccchh
Q 004181 211 YYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN-----------LFD--RRPRRKVSLVAAGSAAG 277 (770)
Q Consensus 211 ~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~-----------~~~--~~~~~~r~l~~~G~aag 277 (770)
++...+|++.|+++.+.++++|..+|||||++|.|+++|+.++| ||+ .+|++||+++.||+|||
T Consensus 182 ---~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAG 258 (762)
T KOG0474|consen 182 ---GIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAG 258 (762)
T ss_pred ---ceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHh
Confidence 34456789999999999999999999999999999999999997 233 57899999999999999
Q ss_pred HHhhccchhhHHHHHHhhc--ccccccccchhhhhhhHHHHHHHHHHHHHHHhh-----hcCCCC--------cccCCcc
Q 004181 278 ISSGFNAAVAGCFFAVESV--IWPSSAADSSASLAYTTSMVILSAVIASVVSEV-----GLGSEP--------AFKVPEY 342 (770)
Q Consensus 278 iaa~F~aPl~g~lf~~E~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~-----~~g~~~--------~f~~~~~ 342 (770)
+||+|+||+||++|++|+. .|+. ++++..++++.+.+++-+. ..|.-. .|.+-+.
T Consensus 259 VaAAF~APvGGvLFaLEE~aS~Wnq----------~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~ 328 (762)
T KOG0474|consen 259 VAAAFRAPVGGVLFALEEGASWWNQ----------ALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDG 328 (762)
T ss_pred HHHHhCCCccceEEEechhhHHHHh----------hHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCC
Confidence 9999999999999999997 4543 3445567788877777662 123222 2333222
Q ss_pred C-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcc------------
Q 004181 343 D-FRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPE------------ 409 (770)
Q Consensus 343 ~-~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~------------ 409 (770)
+ -.+..|+++++++||++|++|++|+.++.+...++.+ .++.+..+.+..++..++.+++++..|-
T Consensus 329 ~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~ 407 (762)
T KOG0474|consen 329 PVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSIT 407 (762)
T ss_pred ccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcc
Confidence 2 2367899999999999999999999997776655554 3333333344344444444444443330
Q ss_pred -----------cccC---------CHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHH
Q 004181 410 -----------ILYW---------GFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAA 469 (770)
Q Consensus 410 -----------~~g~---------G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~ 469 (770)
..++ -.+++.++|++++ +.++...|..++++.++++.+|+|.-.|.|+|.|++.+||+
T Consensus 408 ~~~~p~f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~--~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa 485 (762)
T KOG0474|consen 408 EGQCPTFFCPDGEYNDLATLFFNTNDDAVRNLFHSPT--NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAA 485 (762)
T ss_pred cccCccccCCCCchhHHHHHHcCCcHHHHHHHhcCCC--CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHH
Confidence 0000 1234556666553 56788889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHh
Q 004181 470 TGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549 (770)
Q Consensus 470 ~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~ 549 (770)
.||++|.++...+ .++||.||++||||+++|++||++|.+||++|+| +..+.+|+|++.++|+|+.
T Consensus 486 ~GRlvg~~l~~~~-------------~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VG 551 (762)
T KOG0474|consen 486 YGRLVGMLLGSYT-------------NIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVG 551 (762)
T ss_pred HHHHHHHHHHHhh-------------ccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHH
Confidence 9999999988642 4689999999999999999999999999999999 7779999999999999999
Q ss_pred hhccccccchhhHHHhhhccccccchhhhccccccCCcccccccchhhhhccccccccccccccchhhhhhccccccccc
Q 004181 550 SGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSLCIDDWNLEVEELKRRVFVSEV 629 (770)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dll~~~~~~~~~l~~~~s~~~l~d~~~~~~~~l~~i~V~di 629 (770)
+. |++++||.... .+++|..+ + +.+..+++++++|+
T Consensus 552 D~--FNegiYd~~i~-----------------LkgvP~Le-----------------------~--~pe~~mr~L~a~ev 587 (762)
T KOG0474|consen 552 DS--FNEGIYDIIIQ-----------------LKGVPFLE-----------------------W--EPEPYMRNLTAGEV 587 (762)
T ss_pred hh--hhhhhHHHhhh-----------------ccCCcccc-----------------------C--CCchHhhhhhHhhh
Confidence 87 58889997643 23333221 1 33456889999999
Q ss_pred cccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-----CcEEEEEehHHHHHHHHHHhhhhc----------------
Q 004181 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-----NILIGLLTLGDIEEFSKYAQAKTS---------------- 688 (770)
Q Consensus 630 M~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-----g~lvGiVt~~dL~~~l~~~~~~~~---------------- 688 (770)
|.+++++++..+.+....+.++++.|+.+||+|+. +++.|+|-++++...+++....++
T Consensus 588 ~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~ 667 (762)
T KOG0474|consen 588 MSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFR 667 (762)
T ss_pred ccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHH
Confidence 99999999999999999999999999999999962 579999999999888764322110
Q ss_pred -------ccccccc-----ccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHH
Q 004181 689 -------RSKKLLV-----SEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESI 756 (770)
Q Consensus 689 -------~~~~~~V-----~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DI 756 (770)
..+++.+ +-.++-.++++..|.++.+++++.++..+|++.+++++.||++ .++++|++||+|+
T Consensus 668 d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-----~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 668 DFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-----TNRVVGILTRKDL 742 (762)
T ss_pred HhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-----CCceeEEEehhhh
Confidence 0111111 1112224566668999999999999999999999999999998 7888999999999
Q ss_pred HHHH
Q 004181 757 ILAC 760 (770)
Q Consensus 757 l~~~ 760 (770)
.++.
T Consensus 743 ~~~~ 746 (762)
T KOG0474|consen 743 ARYR 746 (762)
T ss_pred hhHH
Confidence 8764
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-69 Score=584.30 Aligned_cols=568 Identities=24% Similarity=0.293 Sum_probs=430.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc------------------------------CCCcccccCCCchhHHHH
Q 004181 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPY------------------------------GGASWLREKPIPAIWIRV 144 (770)
Q Consensus 95 a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 144 (770)
++++|..+|..+.+.+...+| |++-+..+. ...+|. .++ ...|.++
T Consensus 58 ~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~-~~~-~~~~l~y 133 (696)
T KOG0475|consen 58 VLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWT-GHY-IVSYLIY 133 (696)
T ss_pred hhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCC-Ccc-hHHHHHH
Confidence 478888888888888888776 333322211 001111 111 1356555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHH
Q 004181 145 VLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLK 224 (770)
Q Consensus 145 ~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k 224 (770)
.+......++...+.+. . .+.+.|+||||+|...-. +..+.+++.++++.|
T Consensus 134 ~~~al~fa~la~~lv~~--~--AP~A~gSGIpEIK~ilSG-------------------------f~~~~~lg~~tl~iK 184 (696)
T KOG0475|consen 134 VLWALLFAFLAVSLVKV--V--APYACGSGIPEIKTILSG-------------------------FIIRGFLGKWTLLIK 184 (696)
T ss_pred HHHHHHHHHHHHHHhhh--e--ehhhhcCCCccceeeecc-------------------------chhhhhhhHHHHhhh
Confidence 44444444444444332 1 345677889999975321 122568889999999
Q ss_pred HHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhcc---CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccc
Q 004181 225 AVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSS 301 (770)
Q Consensus 225 ~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~~~---~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~ 301 (770)
.++.+++++||.|+|||||+||++.++|+.+.++|+ .+..++|+.+++++|||+|++|||||||++|++|++. +++
T Consensus 185 sVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~-~~f 263 (696)
T KOG0475|consen 185 SVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVS-YYF 263 (696)
T ss_pred hhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhh-hcC
Confidence 999999999999999999999999999999999885 6778999999999999999999999999999999997 333
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhh---cCCCCcccCCccCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004181 302 AADSSASLAYTTSMVILSAVIASVVSEVG---LGSEPAFKVPEYDF-RSPGELPLYLLLGVLCGLISLTLSRCTTYMLAI 377 (770)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~a~~v~~~~---~g~~~~f~~~~~~~-~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~ 377 (770)
.+ + ..+..++++++|..+.+.+ .++++.+..++|+. |++.|+++|+++|++||+.|.+|.|++.++.++
T Consensus 264 p~------k-tlw~sff~aLsAv~~L~~i~pf~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~ 336 (696)
T KOG0475|consen 264 PL------K-TLWRSFFCALSAVTALRSINPFGNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRF 336 (696)
T ss_pred Cc------c-chHHHHHHHHHHHHHHeeecccCCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 31 2 2334567788888877653 23445555556654 478999999999999999999999999888766
Q ss_pred HHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCcc---------HHHHHHHHHHHHHHHH
Q 004181 378 VDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT---------ADMLLQLVAAKIVATS 448 (770)
Q Consensus 378 ~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~---------~~~l~~~~~~K~~~t~ 448 (770)
++.. + ...++.+.+++++++++++.+..|+...++.+.++.+++.++...+.+ .+.|+...++|+++|+
T Consensus 337 rK~~-~-lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ 414 (696)
T KOG0475|consen 337 RKSS-K-LGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTI 414 (696)
T ss_pred cchh-h-ccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 5554 2 233456778899999999999999999999999999999986654444 5678888999999999
Q ss_pred HhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 004181 449 LCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFEL 528 (770)
Q Consensus 449 lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~El 528 (770)
+|+|++.|+|+|.||+++||++||++|.+...+++. |...+...+++.|++||++||||.++|+||+|+|.+||+||+
T Consensus 415 ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~--~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFEL 492 (696)
T KOG0475|consen 415 FTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN--PDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFEL 492 (696)
T ss_pred hhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC--CCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeec
Confidence 999999999999999999999999999888887776 333344568999999999999999999999999999999999
Q ss_pred hCCcchHHHHHHHHHHHHHHhhhccccccchhhHHHhhhccccccchhhhccccccCCcccccccchhhhhccccccccc
Q 004181 529 TQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPYAINLCEVESSL 608 (770)
Q Consensus 529 tg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dll~~~~~~~~~l~~~~s~~ 608 (770)
||++++++|+|+|+++++|+++.+.+ ..+||.... .|+||.. +..+
T Consensus 493 TG~l~~IlPlm~av~~SkwI~d~~gk-~gIyda~I~----------~ng~P~l----~~k~------------------- 538 (696)
T KOG0475|consen 493 TGALNYILPLMLAVMISKWIGDGLGK-TGIYDAHIE----------LNGYPFL----DSKS------------------- 538 (696)
T ss_pred cCcceeHHHHHHHHHHHHHHHhcccc-chHHHHHHH----------hcCCCCc----cccc-------------------
Confidence 99999999999999999999998854 448887653 3444421 0000
Q ss_pred cccccchhhhhhccccccccccccc--eeEEeC-CCCHHHHHHHHHhcCCcEEEEeC--CCCcEEEEEehHHHHHHHHHH
Q 004181 609 CIDDWNLEVEELKRRVFVSEVMRTR--YVTVLM-TTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKYA 683 (770)
Q Consensus 609 ~l~d~~~~~~~~l~~i~V~diM~~~--~~~v~~-~~tl~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~dL~~~l~~~ 683 (770)
+..+ --...+.+.+..+ ..++.. +++++|...+|.+++++.+||+- ++++++|+|.++|+.-.+.+.
T Consensus 539 -------e~~~-t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~a 610 (696)
T KOG0475|consen 539 -------EFSS-TLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNA 610 (696)
T ss_pred -------cccc-chhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhh
Confidence 0000 0011122222222 444444 48999999999999999888873 357899999999998777533
Q ss_pred hhhhc-------------------cccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC
Q 004181 684 QAKTS-------------------RSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR 744 (770)
Q Consensus 684 ~~~~~-------------------~~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~ 744 (770)
+..++ .......+++|+. .|.++..+++.+.++++|++.++++..|.+ +
T Consensus 611 r~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~------tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~------~ 678 (696)
T KOG0475|consen 611 RKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDM------TPFTVTDLTPMETVVDLFRKLGLRQILVTK------N 678 (696)
T ss_pred ccccccceecccccCCCCccccCCCCCCcCceeeccC------CcccccccCcHHHHHHHHHhhCceEEEEcc------C
Confidence 22111 0112334555555 789999999999999999999999999987 7
Q ss_pred CeEEEEEeHHHHHHHHH
Q 004181 745 GQLVGLLDRESIILACR 761 (770)
Q Consensus 745 g~lvGIIT~~DIl~~~~ 761 (770)
|++.|+||++|+++..+
T Consensus 679 G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 679 GILLGIITKKDCLRHTR 695 (696)
T ss_pred CeeEeeeehHHHHHhhc
Confidence 99999999999998754
No 4
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5.7e-61 Score=535.40 Aligned_cols=410 Identities=24% Similarity=0.346 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004181 90 GVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDD 169 (770)
Q Consensus 90 ~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~ 169 (770)
.++++++++|+++|+++.+|+++++++++++++... .++.......++| +.+++|++||+++++++++.... ..
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~--~~ 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDS---GSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKF--TQ 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cchhhcccccchH-HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 456788999999999999999999999887665422 1121111112345 46899999999999887643321 11
Q ss_pred CCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHH
Q 004181 170 DDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGK 249 (770)
Q Consensus 170 ~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga 249 (770)
..+++++++++.... ++....++.+.|.+++++++++|+|+|||||++|+|+
T Consensus 77 ~~~~g~~~vi~av~~----------------------------~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa 128 (418)
T PRK01610 77 QRPHAPTDYMEALQT----------------------------DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAA 128 (418)
T ss_pred ccCCCcHHHHHHHHc----------------------------CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHH
Confidence 223446555542110 1112234678899999999999999999999999999
Q ss_pred HHHHHHHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 004181 250 SIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (770)
Q Consensus 250 ~ig~~l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~ 329 (770)
++|++++|+++ ++++||.+++||+|||+||+||||++|++|++|+++.+ ++++.+.+ +++++++|+++++.
T Consensus 129 ~~g~~~~~~~~-~~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~-------~~~~~~~p-~~ias~~a~~v~~~ 199 (418)
T PRK01610 129 LAASCFAQRFT-PRQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGT-------LMLASLGP-VVISAVVALLTTNL 199 (418)
T ss_pred HHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------hhHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998 67889999999999999999999999999999998754 33455554 78899999999998
Q ss_pred hcCCC-CcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhc
Q 004181 330 GLGSE-PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFP 408 (770)
Q Consensus 330 ~~g~~-~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P 408 (770)
+.|.+ +.|.++.....+..++++++++|++||++|.+|+++.++..++++ +.+.++++++.++|+++|++.+++|
T Consensus 200 ~~g~~~~~~~i~~~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~----~~~~~~~~~~~lggli~g~l~~~~p 275 (418)
T PRK01610 200 LNGSDALLYNVQLSVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFV----SLKLAPPWQLALGGLIVGLLSLFTP 275 (418)
T ss_pred HcCCCCCeeecCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccchhHHHHHHHHHHHHHHHHhh
Confidence 88754 668887554456788999999999999999999998776655443 3344567889999999999999999
Q ss_pred ccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCc
Q 004181 409 EILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPT 488 (770)
Q Consensus 409 ~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~ 488 (770)
+.+|+||+.++.+++++ .....++.++++|+++|++|+|+|++||.|+|++++||++|+++|++++..+|.
T Consensus 276 ~~~G~G~~~i~~~~~~~-----~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~~~---- 346 (418)
T PRK01610 276 AVWGNGYSVVQSFLTAP-----PLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRSLGLWLPD---- 346 (418)
T ss_pred HHhCCcHHHHHHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 99999999999887653 234456667899999999999999999999999999999999999999876654
Q ss_pred cccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhH
Q 004181 489 IHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562 (770)
Q Consensus 489 ~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~ 562 (770)
....+..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++. +.++++|+..
T Consensus 347 ------~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~-~~~~siy~~~ 413 (418)
T PRK01610 347 ------GEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT-LRRDSIYRQH 413 (418)
T ss_pred ------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH-hCCCCchHHH
Confidence 123478999999999999999999999999999999999999999999999988864 4677888854
No 5
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-58 Score=513.57 Aligned_cols=384 Identities=26% Similarity=0.351 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004181 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (770)
Q Consensus 99 Gv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v 178 (770)
|+++|+++..|+.+++++++++++..... +... ....+|++.+++|++||+++++++++.+ . .|+++||+
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~---~~~~-~~~~~~~~~~~~~~~ggl~~~l~~~~~~----~--~g~gi~~v 70 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGS---FLTG-VAAVSPIRRALSLTVGGLIAGLGWYLLR----R--KGKKLVSI 70 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcccc---chhh-hccCChHHHHHHHHHHHHHHHHHHHHHh----c--cCCCcccH
Confidence 68899999999999999999998754211 1111 1112345567899999999998865432 1 24568887
Q ss_pred cccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004181 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (770)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~ 258 (770)
++.... ++....++.+.|.+++++++++|+|+|||||++|+|+++|++++|+
T Consensus 71 ~~~~~~----------------------------~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~~ 122 (388)
T cd01033 71 KQAVRG----------------------------KKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSDW 122 (388)
T ss_pred HHHhcC----------------------------CCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHHH
Confidence 753211 0112234566899999999999999999999999999999999999
Q ss_pred ccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccc
Q 004181 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (770)
Q Consensus 259 ~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~g~~~~f~ 338 (770)
+++++++||.+++||+|||+||+||||++|++|++|+++.+. +.+.+. +.++++++|+++++.+.|+++.|.
T Consensus 123 ~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~-------~~~~~~-~~~~as~~a~~v~~~~~g~~~~f~ 194 (388)
T cd01033 123 LGLTVADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTI-------SLRSVV-AALATSAIAAAVASLLKGDHPIYD 194 (388)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-------cHHHHH-HHHHHHHHHHHHHHHhCCCCceee
Confidence 999999999999999999999999999999999999997653 234444 468899999999999999999999
Q ss_pred CCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004181 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (770)
Q Consensus 339 ~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i 418 (770)
+++++. ++.++++++++|++||+++.+|+++..++.+++ ++. .+.++++.+++++++++.+++|+.+|+|++.+
T Consensus 195 ~~~~~~-~~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~----~~~-~~~~~~~~l~gl~~g~~~~~~p~~~G~G~~~i 268 (388)
T cd01033 195 IPPMQL-STPLLIWALLAGPVLGVVAAGFRRLSQAARAKR----PKG-KRILWQMPLAFLVIGLLSIFFPQILGNGRALA 268 (388)
T ss_pred cCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccc-cchHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 887655 467889999999999999999999887766543 222 23456788999999999999999999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004181 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (770)
Q Consensus 419 ~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (770)
+.+++++ .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|++++..+|+ .+
T Consensus 269 ~~~~~~~-----~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~~~~~~p~------------~~ 331 (388)
T cd01033 269 QLAFSTT-----LTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIVWNALLPP------------LS 331 (388)
T ss_pred HHHHcCC-----chHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHHHHHhCCc------------cc
Confidence 9988764 345566778999999999999999999999999999999999999999876543 46
Q ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHhC-CcchHHHHHHHHHHHHHHhhh
Q 004181 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-DYRIVLPLLGAVGLSSWFTSG 551 (770)
Q Consensus 499 p~~~alvGaaA~la~~~~aPls~~vi~~Eltg-~~~~~lPlm~a~~ia~~v~~~ 551 (770)
+..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.
T Consensus 332 ~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~ 385 (388)
T cd01033 332 IAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRF 385 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999 999999999999999988754
No 6
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-60 Score=522.59 Aligned_cols=497 Identities=18% Similarity=0.272 Sum_probs=373.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004181 92 IISSCLVGLLTGIGVVLFNKGVHEIRDF---FWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (770)
Q Consensus 92 ~l~a~liGv~~G~~a~~f~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~ 168 (770)
|++.+++|++++++.+.++.+++.+++. +++.+..+ ..+ ..|..|...|+.--+..+.. .+.. .+
T Consensus 96 W~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~-~~y-------l~yl~Wv~y~v~Li~fSA~f---~h~i-ap 163 (931)
T KOG0476|consen 96 WFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSS-HSY-------LAYLSWVGYPVGLVLFSAGF---CHYI-AP 163 (931)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhH-------HHHHHHHHHHHHHHHHHHHH---Hhee-cc
Confidence 5667899999999999999999866653 33222111 010 12222222333222222222 2222 44
Q ss_pred CCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHH
Q 004181 169 DDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIG 248 (770)
Q Consensus 169 ~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~ig 248 (770)
.+.|+||||+|... .++..+.....++++.|.++..+++|||.++|+|||+|||+
T Consensus 164 QAvGSGIPEmKtIl-------------------------rGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHia 218 (931)
T KOG0476|consen 164 QAVGSGIPEMKTIL-------------------------RGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIA 218 (931)
T ss_pred ccccCCChhHHHHH-------------------------HhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHH
Confidence 67788899999631 12345677888999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-------CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHH
Q 004181 249 KSIAKGVGNLFD-------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAV 321 (770)
Q Consensus 249 a~ig~~l~~~~~-------~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (770)
+++++.++++.. -++.+..+++++|||.|+|..|.||+|||||++|++..++. ++|++- -++++.
T Consensus 219 sivA~~l~k~~a~~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFA-------VrnYWR-GFFAAt 290 (931)
T KOG0476|consen 219 SIVAALLSKVTACQFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFA-------VRNYWR-GFFAAT 290 (931)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeee-------HHHHHH-HHHHHH
Confidence 999999988632 35566679999999999999999999999999999977643 466665 477888
Q ss_pred HHHHHHhhhc---C-CC----CcccC---CccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-hcCC
Q 004181 322 IASVVSEVGL---G-SE----PAFKV---PEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNL--QK-DNGI 387 (770)
Q Consensus 322 ~a~~v~~~~~---g-~~----~~f~~---~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~--~~-~~~~ 387 (770)
.++++.|... - .+ ..|+. ++++| ++.|+++|+++|++||++|++|+++.+.+.-++++- .+ -+..
T Consensus 291 csA~vFR~lavf~v~~~~tItA~yqT~F~~d~~F-~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k 369 (931)
T KOG0476|consen 291 CSAFVFRLLAVFFVEAEVTITALYQTSFRPDFPF-DVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQK 369 (931)
T ss_pred hHHHHHHHHHHHcccchhhhHHHHhccCCCCCCC-CHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhh
Confidence 8888887532 1 11 23433 23444 689999999999999999999988766543332221 11 1112
Q ss_pred chhHHHHHHHHHHHHHHHHhcccccC---C----HHHHHHHHccCCCccC---------------------c-cHHHHHH
Q 004181 388 PKAVFPVMGGLAVGLIALMFPEILYW---G----FENVDILLESRPFVKG---------------------L-TADMLLQ 438 (770)
Q Consensus 388 ~~~~~~~l~gl~vg~i~~~~P~~~g~---G----~~~i~~l~~~~~~~~~---------------------~-~~~~l~~ 438 (770)
.++++|++..++++.+ .||..+|. | .+++.++|+|+.|..+ . ....|..
T Consensus 370 ~~llyp~~~a~v~ssl--tfP~GlG~f~aG~l~f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~l 447 (931)
T KOG0476|consen 370 SRLLYPAFIALVFSSL--TFPPGLGQFLAGRLSFRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVL 447 (931)
T ss_pred CccHHHHHHHHHHhhe--ecCCcccccccccccHHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHH
Confidence 4567788887777744 57876663 2 4678888888754211 1 1245788
Q ss_pred HHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCcccc-ccccccchHHHHHHHHHHHHHHHcCc
Q 004181 439 LVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF-SILEVASPQAYGLVGMAATLAGVCQV 517 (770)
Q Consensus 439 ~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~-~~~~~~~p~~~alvGaaA~la~~~~a 517 (770)
+.++||+.+++|....+|.|.|+|.++|||++||++|+.+..+||.. ++. ++...+.||.||++|||||-+++||
T Consensus 448 f~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~G---i~~~gi~~~I~PG~YAVVGAAAfsGaVTH- 523 (931)
T KOG0476|consen 448 FFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEG---IRGGGITPPIHPGGYAVVGAAAFSGAVTH- 523 (931)
T ss_pred HHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccc---cccCCccCccccchhhhhhhhhhccceee-
Confidence 89999999999999999999999999999999999999999888873 221 2345789999999999999999999
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhHHHhhhccccccchhhhccccccCCcccccccchhh
Q 004181 518 PLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVAVHANTNRKRQFEIYTSRTRGLSSSDLLAEEEPY 597 (770)
Q Consensus 518 Pls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dll~~~~~~ 597 (770)
++|.+||+||+|||..+++|+|+|+++|+.+++.. .+++||.... +|++ +|
T Consensus 524 TvSvAVIifElTGQl~hiLPVmIAVllaNAVa~~L--QPSiYDSII~-----------------IKkl----------PY 574 (931)
T KOG0476|consen 524 TVSVAVIIFELTGQLCHILPVMIAVLLANAVAASL--QPSIYDSIIR-----------------IKKL----------PY 574 (931)
T ss_pred eeeEEEEEEeeccchHHHHHHHHHHHHHHHHHHHh--Ccchhhheee-----------------eccC----------Cc
Confidence 69999999999999999999999999999998753 7888886542 2333 24
Q ss_pred hhccccccccccccccchhhhhhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC--CCcEEEEEehHH
Q 004181 598 AINLCEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN--DNILIGLLTLGD 675 (770)
Q Consensus 598 ~~~l~~~~s~~~l~d~~~~~~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~--~g~lvGiVt~~d 675 (770)
+|++. ..+.....+.|+|+|.+++..+..++|.+|..+.+..+..+.+|+||+ +..++|.|.++.
T Consensus 575 LPDlp-------------ps~~~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~ 641 (931)
T KOG0476|consen 575 LPDLP-------------PSRSSVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRY 641 (931)
T ss_pred CCCCC-------------CcccceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHH
Confidence 44332 123446678999999999999999999999999998887999999986 456999999999
Q ss_pred HHHHHHH
Q 004181 676 IEEFSKY 682 (770)
Q Consensus 676 L~~~l~~ 682 (770)
|...++.
T Consensus 642 L~~ll~~ 648 (931)
T KOG0476|consen 642 LTALLQR 648 (931)
T ss_pred HHHHHHh
Confidence 9887753
No 7
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=1.3e-57 Score=512.69 Aligned_cols=410 Identities=21% Similarity=0.275 Sum_probs=322.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004181 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (770)
Q Consensus 99 Gv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v 178 (770)
|+++|+++..+++.++++.+++.+.. .|..+++.+++++++++++.+. . .+...|+|+||+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~~~l~~~--~--~p~a~GsGIp~v 61 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC---------------NYIIYVLLALLFAFIAVLLVKV--V--APYAAGSGIPEI 61 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHh--c--CccccCCCHHHH
Confidence 78899999999999999998875431 2333567788888888887532 1 334567789999
Q ss_pred cccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004181 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (770)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~ 258 (770)
++... .+ +.++...+++.+.|++++++++++|+|+|||||++|+||++|++++|+
T Consensus 62 ~~~l~--g~-----------------------~~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~ 116 (445)
T cd03684 62 KTILS--GF-----------------------IIRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRL 116 (445)
T ss_pred HHHHc--Cc-----------------------cccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHH
Confidence 86321 11 112344456788999999999999999999999999999999999998
Q ss_pred cc---CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhh--c--
Q 004181 259 FD---RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG--L-- 331 (770)
Q Consensus 259 ~~---~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~--~-- 331 (770)
++ .++++||++++||+|||+||+||||++|++|++|++..+. +.+.+. ++++++++|+++.+.+ +
T Consensus 117 ~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~-------~~~~l~-~~~~as~~a~~v~~~~~~~~~ 188 (445)
T cd03684 117 FPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYF-------PLKTLW-RSFFCALVAAFTLKSLNPFGT 188 (445)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhc-------cHHHHH-HHHHHHHHHHHHHHHhcccCC
Confidence 74 5889999999999999999999999999999999987642 234444 4788999999988864 2
Q ss_pred CCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004181 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (770)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~ 411 (770)
+....|.++....++..|+++++++|++||++|.+|+++..++.+++++... +.++++++++++++++++.++.|+..
T Consensus 189 ~~~~~f~~~~~~~~~~~~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~ 266 (445)
T cd03684 189 GRLVLFEVEYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR 266 (445)
T ss_pred CCceEEeccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc
Confidence 3334455432222356789999999999999999999999887776655421 23567889999999999999999999
Q ss_pred cCCHHHHHHHHccCCCc--------------cC--ccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHH
Q 004181 412 YWGFENVDILLESRPFV--------------KG--LTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYG 475 (770)
Q Consensus 412 g~G~~~i~~l~~~~~~~--------------~~--~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g 475 (770)
++|++.++++++++... .+ .+...++.++++|+++|++|+|+|+|||+|+|++++||++|+++|
T Consensus 267 ~~g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g 346 (445)
T cd03684 267 LDMTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVG 346 (445)
T ss_pred cchhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHH
Confidence 99999999988653110 00 123456778899999999999999999999999999999999999
Q ss_pred HHHHHhh---hcCCCccc--cccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhh
Q 004181 476 KFINFAI---AQSNPTIH--FSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 476 ~~~~~~~---~~~~~~~~--~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~ 550 (770)
.+++.+. |+.. .+. .+..+..+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 347 ~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~~vs~ 425 (445)
T cd03684 347 ILVEQLAYSYPDSI-FFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVAD 425 (445)
T ss_pred HHHHHHHhhCCccc-ccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHHHHHH
Confidence 9998653 3200 000 000123678999999999999999999999999999999999999999999999999886
Q ss_pred hccccccchhhHHH
Q 004181 551 GQMRRRDVKETKVA 564 (770)
Q Consensus 551 ~~~~~~~~~~~~~~ 564 (770)
. +.++++|+....
T Consensus 426 ~-~~~~siY~~~l~ 438 (445)
T cd03684 426 A-IGKEGIYDAHIH 438 (445)
T ss_pred H-hCCCCHHHHHHH
Confidence 4 467889987654
No 8
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.4e-56 Score=505.62 Aligned_cols=413 Identities=25% Similarity=0.390 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 004181 93 ISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDD 172 (770)
Q Consensus 93 l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g 172 (770)
++++++|+++|+++.+|+++++++++++++..... ...+ ...|...++.+.+++++.+++.+ .. .+...|
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~l~~--~~--~p~~~G 71 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV-----ADNG-LLLWIVAFLISAVLAMIGYFLVR--RF--APEAGG 71 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccc-hHHHHHHHHHHHHHHHHHHHHHH--hc--CcccCC
Confidence 56899999999999999999999999987643210 0000 01122123344444444444432 22 233456
Q ss_pred cchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHH
Q 004181 173 DDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIA 252 (770)
Q Consensus 173 ~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig 252 (770)
+++|++++..... +.....++...|++++++++++|+|+|+|||++|+|+++|
T Consensus 72 sGi~~i~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig 124 (438)
T PRK05277 72 SGIPEIEGALEGL---------------------------RPVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIG 124 (438)
T ss_pred CCHHHHHHHHcCC---------------------------CccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHH
Confidence 7799887532111 0111123567899999999999999999999999999999
Q ss_pred HHHHhhccC-CccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhc
Q 004181 253 KGVGNLFDR-RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGL 331 (770)
Q Consensus 253 ~~l~~~~~~-~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 331 (770)
++++++++. +++++|.+++||+|||++++||||++|++|++|++..+.. ++.+++. ++++++++|+++++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~-----~~~~~~~-~~~~a~~~a~~v~~~~~ 198 (438)
T PRK05277 125 RMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFR-----YSLISIK-AVFIGVIMATIVFRLFN 198 (438)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhcc-----ccHHHHH-HHHHHHHHHHHHHHHhc
Confidence 999999998 7889999999999999999999999999999998754210 1223444 46789999999999988
Q ss_pred CCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccc
Q 004181 332 GSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEIL 411 (770)
Q Consensus 332 g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~ 411 (770)
|+.+.|+++.++..+..+++.++++|++||++|.+|+++..+.+++++++++....+..+...++|++++++.+++|+..
T Consensus 199 g~~~~~~~~~~~~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~~ 278 (438)
T PRK05277 199 GEQAVIEVGKFSAPPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAV 278 (438)
T ss_pred CCCceEeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99899988876655677899999999999999999999998888776665432222223345678888898899999999
Q ss_pred cCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCcccc
Q 004181 412 YWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (770)
Q Consensus 412 g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (770)
|+|++.++++++++ .+...++.++++|+++|++|+|+|++||.|+|++++||++|+++|++++.++|.
T Consensus 279 g~G~~~i~~~~~~~-----~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~~~~~~p~------- 346 (438)
T PRK05277 279 GGGFNLIPIALAGN-----FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMVAAALFPQ------- 346 (438)
T ss_pred CChHHHHHHHHcCC-----chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------
Confidence 99999999988754 355667778999999999999999999999999999999999999999987764
Q ss_pred ccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhHHH
Q 004181 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKVA 564 (770)
Q Consensus 492 ~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~~ 564 (770)
...+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++. +.++++|+....
T Consensus 347 ---~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~-~~~~~iy~~~l~ 415 (438)
T PRK05277 347 ---YHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQF-LGGKPIYSALLE 415 (438)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-hCCCChHHHHHH
Confidence 235789999999999999999999999999999999999999999999999988865 567888987654
No 9
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=7.4e-57 Score=503.08 Aligned_cols=400 Identities=27% Similarity=0.439 Sum_probs=331.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhh
Q 004181 98 VGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQ 177 (770)
Q Consensus 98 iGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~ 177 (770)
+|+++|+++.+|+.+++++++++++..+... . ....|+.+++++.++|++++++.+.. . +...|+++|+
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~g~~~~~l~~~~--~--p~~~g~G~~~ 69 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA-----N--NPPLLLVLPLISAVLGLLAGWLVKKF--A--PEAKGSGIPQ 69 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc-----c--ccHHHHHHHHHHHHHHHHHHHHHHhc--C--CccCCCCHHH
Confidence 5889999999999999999999887532110 1 11234345677888888888775421 2 2234566888
Q ss_pred ccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHh
Q 004181 178 VQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGN 257 (770)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~ 257 (770)
+++....+ .+....++.+.|++++++++++|+|+|+|||++|+|+++|+++++
T Consensus 70 v~~~l~~~---------------------------~~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~ 122 (402)
T cd01031 70 VEGVLAGL---------------------------LPPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK 122 (402)
T ss_pred HHHHHcCC---------------------------CCcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 87532111 011223567899999999999999999999999999999999999
Q ss_pred hccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCcc
Q 004181 258 LFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAF 337 (770)
Q Consensus 258 ~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~g~~~~f 337 (770)
+++.+++++|.+++||+|||++++||||++|++|++|++..++ +.+.+ .++++++++|+++++.+.|+++.|
T Consensus 123 ~~~~~~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~-------~~~~~-~~~~~a~~~a~~v~~~~~~~~~~~ 194 (402)
T cd01031 123 WFKTSPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSF-------SPLAL-LTALVASIAADFVSRLFFGLGPVL 194 (402)
T ss_pred HhcCCHHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhC-------CHHHH-HHHHHHHHHHHHHHHHHcCCCceE
Confidence 9998888999999999999999999999999999999886542 12333 457889999999999988999999
Q ss_pred cCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHH
Q 004181 338 KVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFEN 417 (770)
Q Consensus 338 ~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~ 417 (770)
.+++++.++..|+++++++|++||++|.+|+++..+..+++++.+ +.++++++.+++++++++.++.|+.+|+|++.
T Consensus 195 ~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~~~~~~~~~p~~~g~G~~~ 271 (402)
T cd01031 195 SIPPLPALPLKSYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK---KLPRELRVLLPGLLIGPLGLLLPEALGGGHGL 271 (402)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChhHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 888766567789999999999999999999998887766655432 34567889999999999999999999999999
Q ss_pred HHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCcccccccccc
Q 004181 418 VDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVA 497 (770)
Q Consensus 418 i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~ 497 (770)
++.+++++ .+...++.+++.|+++|++|+++|++||.|+|++++||++|+++|++++.++|. ...
T Consensus 272 i~~~~~~~-----~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~----------~~~ 336 (402)
T cd01031 272 ILSLAGGN-----FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTILVQLGPI----------PIS 336 (402)
T ss_pred HHHHHcCC-----chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc----------ccc
Confidence 98887643 466677788999999999999999999999999999999999999999987764 346
Q ss_pred chHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhH
Q 004181 498 SPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETK 562 (770)
Q Consensus 498 ~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~ 562 (770)
+|+.|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ .++++||..
T Consensus 337 ~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~-~~~siY~~~ 400 (402)
T cd01031 337 APATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLL-GGKPIYEAL 400 (402)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHh-CCCChhHHH
Confidence 8999999999999999999999999999999999999999999999999998654 577888753
No 10
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-55 Score=490.08 Aligned_cols=407 Identities=30% Similarity=0.452 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 004181 91 VIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDD 170 (770)
Q Consensus 91 ~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~ 170 (770)
.+..++++|+++|+....++....+.+...... +. .......| +.+++|+.+|++++. .++....++ .
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~-~~~l~~~~~gl~~g~-~~~~~~~p~--~ 89 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGL-------LS-AAQAPGPW-LLPLVPALGGLLVGA-LLVYKFAPE--A 89 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-------cc-ccccchhH-HHHHHHHHHHHHHHH-HHHHHhCcc--c
Confidence 344455555555555555555444433322110 00 00111234 367888899999995 223333223 3
Q ss_pred CCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHH
Q 004181 171 DDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKS 250 (770)
Q Consensus 171 ~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ 250 (770)
.|+++||+++.... .++...++...+|.+++.+++++|+|+|||||++|+|++
T Consensus 90 ~g~Gi~~~i~a~~~---------------------------~~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~ 142 (443)
T COG0038 90 RGSGIPQAIEALHG---------------------------RKGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAA 142 (443)
T ss_pred cCCChhHHHHHHhc---------------------------CCCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHH
Confidence 44668888764211 012233445667999999999999999999999999999
Q ss_pred HHHHHHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhh
Q 004181 251 IAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVG 330 (770)
Q Consensus 251 ig~~l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~ 330 (770)
+|+.++++++.++++||.+++||+|||+||+||||++|++|++|+++.++ ++..++.+ +++++++++.+.+.+
T Consensus 143 ~g~~~~~~l~~~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~------~~~~~l~p-~~vaa~va~~v~~~~ 215 (443)
T COG0038 143 IGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF------LEYRALVP-VLVAAVVALLVAGLF 215 (443)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc------ccHHHHHH-HHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998763 22355554 788999999999998
Q ss_pred cCCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhccc
Q 004181 331 LGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEI 410 (770)
Q Consensus 331 ~g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~ 410 (770)
.+..+.+.++.++..++++++.++++|+++|++|.+|.++.... ++++++.+.+.++++++++++++.+.+++|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~l~g~~~l~~P~~ 291 (443)
T COG0038 216 GGPHFLLPIVTTPHMSLWDLLLYLVLGIIAGLFGVLLSRLLALS----RRFFRRLPLPPLLRPALGGLLVGALGLLFPEV 291 (443)
T ss_pred CCCCceeeccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcchHHHHHHHHHHHHHHHHHhchhh
Confidence 88677777766666678899999999999999999999987544 45556666778899999999999999999999
Q ss_pred ccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccc
Q 004181 411 LYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIH 490 (770)
Q Consensus 411 ~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~ 490 (770)
+|+|++.++...+++ .....++.+++.|+++|++|+|||+|||+|+|++++||++|.++|.+++..+|.
T Consensus 292 lg~G~~~~~~~~~~~-----~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~~~~~~~~------ 360 (443)
T COG0038 292 LGNGYGLIQLALAGE-----GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGALLGLLFPP------ 360 (443)
T ss_pred hCCCccHHHHHHccC-----ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHHHHhhcCc------
Confidence 999999999888765 223226778999999999999999999999999999999999999999987664
Q ss_pred cccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchhhHH
Q 004181 491 FSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKETKV 563 (770)
Q Consensus 491 ~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~ 563 (770)
...++..|+++||+|++++++|+|+|++++++||||+++.++|+|+++++++++++.. ..+++|+...
T Consensus 361 ----~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~-~~~~~~~~~~ 428 (443)
T COG0038 361 ----SILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLL-GGRPIYTQLL 428 (443)
T ss_pred ----cccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 2356889999999999999999999999999999999999999999999999988764 4566666543
No 11
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=8.1e-56 Score=500.50 Aligned_cols=397 Identities=21% Similarity=0.300 Sum_probs=295.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004181 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (770)
Q Consensus 88 ~~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~ 167 (770)
.+..|++++++|+++|+++++|+.+++++++++++.... +..+.+....|..+++.|+++|++++++.++. .
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~----~ 100 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKN----YIEKGRLFTAFLVYLGLNLVLVLVAALLVAYI----A 100 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 355677889999999999999999999999987654311 11111111234435578889999999886532 2
Q ss_pred CCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004181 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (770)
Q Consensus 168 ~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~i 247 (770)
+...|+|+||+++.. +.. ..++...+++.+.|++++++++++|+|+|||||++|+
T Consensus 101 p~a~GsGip~v~~~l--~g~-----------------------~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~i 155 (466)
T cd03685 101 PTAAGSGIPEVKGYL--NGV-----------------------KIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHI 155 (466)
T ss_pred cccCCCCHHHHHHHH--cCc-----------------------CccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchH
Confidence 335567899988631 110 1122334567789999999999999999999999999
Q ss_pred HHHHHHHHHhh-----------cc--CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHH
Q 004181 248 GKSIAKGVGNL-----------FD--RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTS 314 (770)
Q Consensus 248 ga~ig~~l~~~-----------~~--~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~ 314 (770)
||++|++++++ ++ .+++++|++++||+|||+|++||||++|++|++|++...+.. + ...
T Consensus 156 Ga~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~-------~-~~~ 227 (466)
T cd03685 156 GACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQ-------A-LTW 227 (466)
T ss_pred HHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcch-------h-HHH
Confidence 99999999973 22 366889999999999999999999999999999998643211 1 122
Q ss_pred HHHHHHHHHHHHHhhhc---CC--CCcc--------cCCc-cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004181 315 MVILSAVIASVVSEVGL---GS--EPAF--------KVPE-YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDN 380 (770)
Q Consensus 315 ~~~~~~~~a~~v~~~~~---g~--~~~f--------~~~~-~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~ 380 (770)
..++++++|+++++.+. +. ...| ..+. ...+++.|+++++++|++||++|.+|++...++.+++++
T Consensus 228 ~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~ 307 (466)
T cd03685 228 RTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKR 307 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665554321 11 1222 2221 112356789999999999999999999998888766555
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCcccee
Q 004181 381 LQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYY 460 (770)
Q Consensus 381 ~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f 460 (770)
..+. +++.+ .+++++++++...++. ...++.++++|+++|++|+|+|+|||+|
T Consensus 308 ~~~~---~~~~~-~l~~~lv~~~~~~~~~-----------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif 360 (466)
T cd03685 308 INHK---GKLLK-VLEALLVSLVTSVVAF-----------------------PQTLLIFFVLYYFLACWTFGIAVPSGLF 360 (466)
T ss_pred hccc---cchhH-HHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4321 22233 3455555544333221 1134556678999999999999999999
Q ss_pred chHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHH
Q 004181 461 APSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLG 540 (770)
Q Consensus 461 ~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~ 540 (770)
+|++++||++|+++|.+++.+++. ...+|+.|+++||+|++++++|+|+|+++|++|+||++++++|+|+
T Consensus 361 ~Psl~iGA~~G~~~g~~~~~~~~~----------~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~i 430 (466)
T cd03685 361 IPMILIGAAYGRLVGILLGSYFGF----------TSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIML 430 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc----------cCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHH
Confidence 999999999999999999876543 3467999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccccchhhHHH
Q 004181 541 AVGLSSWFTSGQMRRRDVKETKVA 564 (770)
Q Consensus 541 a~~ia~~v~~~~~~~~~~~~~~~~ 564 (770)
++++|+++++.+ ++++||....
T Consensus 431 a~~iA~~va~~~--~~siY~~~l~ 452 (466)
T cd03685 431 VLMIAKWVGDYF--NEGIYDIIIQ 452 (466)
T ss_pred HHHHHHHHHHHh--CCCHHHHHHH
Confidence 999999998763 4789997654
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=5.8e-55 Score=485.29 Aligned_cols=387 Identities=28% Similarity=0.373 Sum_probs=311.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhccccC
Q 004181 103 GIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQVQDKS 182 (770)
Q Consensus 103 G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v~~~~ 182 (770)
|+++..|+.+++++++++++.... .+|+.++++|++|+++.+++.++ .+...|+++||+++..
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~p~~~~~~~~~~~~~-----~p~~~gsGi~~v~~~~ 63 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTAT------------HPWLPLLLTPAGFALIAWLTRRF-----FPGAAGSGIPQVIAAL 63 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHh------------chHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCHHHHHHHH
Confidence 577889999999999988753211 13544567788888777766442 2234567899988642
Q ss_pred CCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhhccCC
Q 004181 183 YPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRR 262 (770)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~~~~~ 262 (770)
..+.. .+..+..+.++.+.|++++++++++|+|+|||||++|+|+++|++++|++++.
T Consensus 64 ~~~~~----------------------~~~~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~ 121 (390)
T cd01034 64 ELPSA----------------------AARRRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKW 121 (390)
T ss_pred ccccc----------------------ccccccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccC
Confidence 21100 01122445667889999999999999999999999999999999999999985
Q ss_pred -ccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCcccCCc
Q 004181 263 -PRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFKVPE 341 (770)
Q Consensus 263 -~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~g~~~~f~~~~ 341 (770)
++++|.+++||+|||+||+||||++|++|++|++..++ ..+... .+++++++|+++++.++|+++.|.+++
T Consensus 122 ~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~~-------~~~~~~-~~~~~~~~a~~~~~~~~g~~~~f~~~~ 193 (390)
T cd01034 122 GGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRDF-------ELRFSG-LVLLAVIAAGLVSLAVLGNYPYFGVAA 193 (390)
T ss_pred chHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhhh-------hHHHHH-HHHHHHHHHHHHHHHHcCCCCccCCCC
Confidence 78999999999999999999999999999999997642 223333 467788889999998899999998876
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhHHHHHHHHHHHHHHHHhc-ccccCCHHHHH
Q 004181 342 YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKAVFPVMGGLAVGLIALMFP-EILYWGFENVD 419 (770)
Q Consensus 342 ~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~gl~vg~i~~~~P-~~~g~G~~~i~ 419 (770)
.+..++.+++.++++|++||++|.+|+++..++.+++++..+. .+.++++++.++|++++++.++.| +..|+|++.++
T Consensus 194 ~~~~~~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~G~G~~~i~ 273 (390)
T cd01034 194 VALPLGEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLTFGTGYLQAR 273 (390)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCccccCcHHHHH
Confidence 5544567888999999999999999999988888777665322 223445667788888888888775 78899999999
Q ss_pred HHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccch
Q 004181 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (770)
Q Consensus 420 ~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p 499 (770)
++++++. . ....++++|+++|++|+++|+|||+|+|++++||++|++++++++. .+|
T Consensus 274 ~~~~~~~---~----~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~~~~~----------------~~~ 330 (390)
T cd01034 274 AALEGGG---G----LPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS----------------VSQ 330 (390)
T ss_pred HHHhCCC---c----ccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHHHhcC----------------CCc
Confidence 9887641 1 2234678999999999999999999999999999999999987641 368
Q ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhccccccchh
Q 004181 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQMRRRDVKE 560 (770)
Q Consensus 500 ~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~~~~~~~~ 560 (770)
..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ +.+++||
T Consensus 331 ~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~-~~~~iY~ 390 (390)
T cd01034 331 GALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLV-CPEPLYH 390 (390)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHh-CCCCCCC
Confidence 89999999999999999999999999999999999999999999999988755 5666664
No 13
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=1.6e-54 Score=484.70 Aligned_cols=388 Identities=23% Similarity=0.264 Sum_probs=299.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004181 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (770)
Q Consensus 99 Gv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v 178 (770)
|+++|+++.+|+.+++++++++...+...... ....|..+++.|++++++.+++.++. .+...|+++||+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~----~p~a~GsGIp~v 70 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGS------YLLGYLMWVLWSVVLVLISSGICLYF----APQAAGSGIPEV 70 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCCCHHHH
Confidence 56788888889988888888776543211000 11234334677888888777775432 234556779999
Q ss_pred cccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004181 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (770)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~ 258 (770)
+..... . +.++....++.+.|++++++++++|+|+|||||++|+|+++|++++++
T Consensus 71 ~~~l~g--~-----------------------~~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~ 125 (416)
T cd01036 71 MAYLNG--V-----------------------HLPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQG 125 (416)
T ss_pred HHHHcC--C-----------------------cccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh
Confidence 863110 0 112334566888999999999999999999999999999999999997
Q ss_pred cc-------------CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHH
Q 004181 259 FD-------------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (770)
Q Consensus 259 ~~-------------~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 325 (770)
++ .++++||++++||+|||+|++||||++|++|++|++..++. .+.. .++++++++|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APiaGvlFalE~~~~~~~-------~~~~-~~~~~as~~a~~ 197 (416)
T cd01036 126 RSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFP-------VRLA-WRVFFAALVSAF 197 (416)
T ss_pred cccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcceeeeeeeHHhhcccc-------HHHH-HHHHHHHHHHHH
Confidence 64 46788999999999999999999999999999999965422 2334 347889999999
Q ss_pred HHhhhcCCCCccc--------------CCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchh
Q 004181 326 VSEVGLGSEPAFK--------------VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD-NGIPKA 390 (770)
Q Consensus 326 v~~~~~g~~~~f~--------------~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~ 390 (770)
+++.+.+..+.+. ++.....+..|+++++++|++||++|.+|++++.++.+++++..+. .+.+++
T Consensus 198 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 277 (416)
T cd01036 198 VIQIYNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRV 277 (416)
T ss_pred HHHHhccccCCccccccccccceeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 9887766543322 2211223457899999999999999999999999888877665332 334567
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHH
Q 004181 391 VFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAAT 470 (770)
Q Consensus 391 ~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~ 470 (770)
+++++++++++++.+ ...++.+++.|+++|++|+++|+|||+|+|++++||++
T Consensus 278 ~~~~~~~~i~~~~~~---------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~ 330 (416)
T cd01036 278 LEPVLFTLIYSTIHY---------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAI 330 (416)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 788899988887754 12456678899999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhh
Q 004181 471 GMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 471 G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~ 550 (770)
|+++|.+++.++|...+.. ......+|+.|+++||||++++++|+|+|++++++|+||++++++|+|+++++|+++++
T Consensus 331 G~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~ 408 (416)
T cd01036 331 GRLVGLLVHRIAVAGIGAE--SATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVAD 408 (416)
T ss_pred HHHHHHHHHHHcccccccc--ccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHH
Confidence 9999999998776421100 00124679999999999999999999999999999999999999999999999999987
Q ss_pred hccccccchh
Q 004181 551 GQMRRRDVKE 560 (770)
Q Consensus 551 ~~~~~~~~~~ 560 (770)
.+ . +++||
T Consensus 409 ~~-~-~siY~ 416 (416)
T cd01036 409 AF-C-ESLYH 416 (416)
T ss_pred hh-C-CCCCC
Confidence 65 3 67775
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=3.6e-54 Score=473.42 Aligned_cols=350 Identities=35% Similarity=0.568 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHH
Q 004181 150 CGGFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAAC 229 (770)
Q Consensus 150 ~gglivg~l~~~~~~~~~~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~ 229 (770)
++|++++++++... +...|+++|++++..... +...+.++.+.|+++++
T Consensus 1 ~~~~~~~~l~~~~~----p~~~g~Gi~~v~~~~~~~---------------------------~~~~~~~~~~~k~~~~~ 49 (355)
T PF00654_consen 1 IGGLLSGLLWKKFA----PEAAGSGIPEVKAALRGK---------------------------SGRLPFRTLPVKFVGSI 49 (355)
T ss_dssp -HHHHHHHHHHHC-----GGGSB-SHHHHHHHCTTS---------------------------S---HHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHC----CccCCCCHHHHHHHHhCC---------------------------CCCCCHHHHHHHHHHHH
Confidence 46788888765431 123457799998643211 11244567889999999
Q ss_pred HHHhcCCccCCchhHHHHHHHHHHHHHhhccCCccc-hhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhh
Q 004181 230 ITLGTGNSLGPEGPSVEIGKSIAKGVGNLFDRRPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSAS 308 (770)
Q Consensus 230 ~~lg~G~s~G~EgP~v~iga~ig~~l~~~~~~~~~~-~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~ 308 (770)
+++++|+|+|||||++|+|+++|++++|+++.++++ +|.+++||+|||+|++||||++|++|++|++..+. +
T Consensus 50 ~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~-------~ 122 (355)
T PF00654_consen 50 LSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDF-------S 122 (355)
T ss_dssp HHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCC-------S
T ss_pred HHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccc-------c
Confidence 999999999999999999999999999999977666 88899999999999999999999999999976543 2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCccc-CCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 004181 309 LAYTTSMVILSAVIASVVSEVGLGSEPAFK-VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI 387 (770)
Q Consensus 309 ~~~~~~~~~~~~~~a~~v~~~~~g~~~~f~-~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~ 387 (770)
.+.+. ++++++++|+++++.+.|+++.|. +++...+++.|+++++++|++||++|.+|+++..++.+++++.. +.+.
T Consensus 123 ~~~~~-~~~~as~~a~~v~~~~~~~~~~f~~~~~~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~ 200 (355)
T PF00654_consen 123 VRLLL-PALVASIVATLVSRLLFGNHPIFGSVPQLFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKI 200 (355)
T ss_dssp TTTHH-HHHHHHHHHHHHHHHHHTSS-SS---TT-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred chhhH-HHHHHHHHHHHHHHHHcCcCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccc
Confidence 34444 478999999999999999999998 77655557889999999999999999999999999888777764 3344
Q ss_pred chhHHHHHHHHHHHHHHHHhcc--cccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHH
Q 004181 388 PKAVFPVMGGLAVGLIALMFPE--ILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLF 465 (770)
Q Consensus 388 ~~~~~~~l~gl~vg~i~~~~P~--~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~ 465 (770)
+++++++++|++++++.+++|+ .+|+|++.+++++++++ ..++...++.+++.|+++|.+|+++|++||.|+|+++
T Consensus 201 ~~~l~~~i~gl~~g~l~~~~p~~~~~g~G~~~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~ 278 (355)
T PF00654_consen 201 PPILRPVIGGLVIGLLAFFFPEGSVLGSGYELIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLF 278 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHSSGG-SGSSSSTTHHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhhhcccCCcHHHHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHH
Confidence 5567999999999999999999 99999999999997642 1356778899999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 004181 466 IGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLS 545 (770)
Q Consensus 466 iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia 545 (770)
+||++|+++|.+++..+|+. ...+|+.|+++||+|++++++|+|++++++++|+|||+++++|+|+++++|
T Consensus 279 iGa~~G~~~~~~~~~~~~~~---------~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a 349 (355)
T PF00654_consen 279 IGAALGRLFGALLGSFFPGI---------SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVA 349 (355)
T ss_dssp HHHHHHHHHHHHHHHH-GGG----------T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCc---------CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999999999887641 123799999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 004181 546 SWFTS 550 (770)
Q Consensus 546 ~~v~~ 550 (770)
+++++
T Consensus 350 ~~v~~ 354 (355)
T PF00654_consen 350 YLVAR 354 (355)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98764
No 15
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=2.2e-53 Score=472.90 Aligned_cols=383 Identities=39% Similarity=0.602 Sum_probs=319.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcchhhc
Q 004181 99 GLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDDVQQV 178 (770)
Q Consensus 99 Gv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~i~~v 178 (770)
|+++|+++.+|+.++++.++++|+..+.... ....+|+++++.|++|+++++++.++.+ + ..|++++++
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~v~l~~~~~~---~--~~g~G~~~v 69 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELA------AGSLSPLYILLVPVIGGLLVGLLVRLLG---P--ARGHGIPEV 69 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccc------cccccHHHHHHHHHHHHHHHHHHHHHhC---c--ccCCChHHH
Confidence 6889999999999999999999876442110 0012344567889999999998875432 1 345568887
Q ss_pred cccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHHHHhh
Q 004181 179 QDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKGVGNL 258 (770)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~l~~~ 258 (770)
++..... ++....++.+.|++++++++++|+|+|+|||++|+|+++|++++++
T Consensus 70 ~~~~~~~---------------------------~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~ 122 (383)
T cd00400 70 IEAIALG---------------------------GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRR 122 (383)
T ss_pred HHHHHhC---------------------------CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6432110 1112345778999999999999999999999999999999999999
Q ss_pred ccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCCCccc
Q 004181 259 FDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSEPAFK 338 (770)
Q Consensus 259 ~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~g~~~~f~ 338 (770)
++.++.++|.+++||+|||++++||||++|++|++|++..++. .+. ..++++++++++.+++.+.++.+.|.
T Consensus 123 ~~~~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~-------~~~-~~~~~~~~~~a~~v~~~~~~~~~~~~ 194 (383)
T cd00400 123 LRLSRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYS-------VAS-LIPVLLASVAAALVSRLLFGAEPAFG 194 (383)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhcc-------HHH-HHHHHHHHHHHHHHHHHHcCCCCeee
Confidence 9988889999999999999999999999999999999976432 133 34578899999999999889888888
Q ss_pred CCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHH
Q 004181 339 VPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENV 418 (770)
Q Consensus 339 ~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i 418 (770)
++.....+..+++.++++|++||++|.+|+++..++.+++++. +.++++++++++++++++.++.|+..|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~~g~G~~~~ 270 (383)
T cd00400 195 VPLYDPLSLLELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQVLGSGYGAI 270 (383)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 8764445678899999999999999999999888776554432 356778899999999999999999999999998
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004181 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (770)
Q Consensus 419 ~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (770)
+..++++ .+...++.+++.|+++|++|+++|++||+|+|++++||++|+++|++++.++|. +..+
T Consensus 271 ~~~~~~~-----~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~~~~~~~~----------~~~~ 335 (383)
T cd00400 271 LLALAGE-----LSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLLLPALFPG----------LVAS 335 (383)
T ss_pred HHHHcCC-----hhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhCCc----------ccCC
Confidence 8777653 355567778999999999999999999999999999999999999999987764 3468
Q ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 004181 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSS 546 (770)
Q Consensus 499 p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~ 546 (770)
|..|+++||+|++++++|+|++++++++|+||+++.++|+|+++++|+
T Consensus 336 ~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 336 PGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988763
No 16
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=1.1e-53 Score=478.78 Aligned_cols=398 Identities=19% Similarity=0.250 Sum_probs=302.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 004181 92 IISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDD 171 (770)
Q Consensus 92 ~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~ 171 (770)
|+..+++|+++|+++..++.+++++++++....... .+++ ...|..+++.|++++++++++.+. . .+...
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~~~~l~~~--~--~p~a~ 71 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL-----TGNS-LLQYLVWVAYPVALVLFSALFCKY--I--SPQAV 71 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccch-HHHHHHHHHHHHHHHHHHHHHHHh--c--CCccC
Confidence 455679999999999999999999887765432111 1111 123344567899989888887642 1 23456
Q ss_pred CcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHH
Q 004181 172 DDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSI 251 (770)
Q Consensus 172 g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~i 251 (770)
|+|+||+++.... . ..++....++.+.|++++++++++|+|+|||||++|+|+++
T Consensus 72 GsGIp~v~~~l~g--~-----------------------~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i 126 (426)
T cd03683 72 GSGIPEMKTILRG--V-----------------------VLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIV 126 (426)
T ss_pred CCCHHHHHHHHcC--C-----------------------CccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHH
Confidence 6789999753110 0 11234445678899999999999999999999999999999
Q ss_pred HHHHHhhcc------CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHH
Q 004181 252 AKGVGNLFD------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (770)
Q Consensus 252 g~~l~~~~~------~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 325 (770)
++.++|+++ .++.+||++++||+|||+||+||||++|++|++|++..++. .+... +++++|++|++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~-------~~~~~-~~~i~s~~a~~ 198 (426)
T cd03683 127 AALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFA-------VRNYW-RGFFAATCGAF 198 (426)
T ss_pred HHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhcc-------HHHHH-HHHHHHHHHHH
Confidence 999999875 35677889999999999999999999999999999876432 23444 46788898988
Q ss_pred HHhhhc----CCCCc---ccCCc--cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cCCchhHHH
Q 004181 326 VSEVGL----GSEPA---FKVPE--YDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKD---NGIPKAVFP 393 (770)
Q Consensus 326 v~~~~~----g~~~~---f~~~~--~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~~~ 393 (770)
+++.+. ++.+. |.... ...++..+++.++++|++||++|.+|++++.++.+++++..+. .+.++++++
T Consensus 199 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 278 (426)
T cd03683 199 TFRLLAVFFSDQETITALFKTTFFVDFPFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYP 278 (426)
T ss_pred HHHHHHhhcCCCccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHH
Confidence 877542 33332 32221 1123557899999999999999999999998888776654321 233566788
Q ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHH
Q 004181 394 VMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (770)
Q Consensus 394 ~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 473 (770)
++++++++.+. +| ...++.+.++|+++|++|+|+|+|||+|+|++++||++|++
T Consensus 279 ~~~g~~~~~l~--~p------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~~ 332 (426)
T cd03683 279 AIVALLTAVLT--FP------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRL 332 (426)
T ss_pred HHHHHHHHHHH--HH------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHHH
Confidence 88888887653 45 12456678899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhhhcc
Q 004181 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTSGQM 553 (770)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~~~~ 553 (770)
+|.+++.++|+.... ......+|+.|+++||+|++++++|+|.++ ++++|+||++++++|+|+++++|+++++.+
T Consensus 333 ~g~~~~~~~p~~~~~---~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~- 407 (426)
T cd03683 333 VGEIMAVLFPEGIRG---GISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFL- 407 (426)
T ss_pred HHHHHHHHcCccccc---CCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhh-
Confidence 999999877621000 000235789999999999999999997765 699999999999999999999999998754
Q ss_pred ccccchhhHHH
Q 004181 554 RRRDVKETKVA 564 (770)
Q Consensus 554 ~~~~~~~~~~~ 564 (770)
++++||....
T Consensus 408 -~~~iY~~~l~ 417 (426)
T cd03683 408 -QPSIYDSIIK 417 (426)
T ss_pred -CCCHHHHHHH
Confidence 4699997654
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-50 Score=448.59 Aligned_cols=368 Identities=21% Similarity=0.294 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 004181 95 SCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLDDDDDDD 174 (770)
Q Consensus 95 a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~~~~g~~ 174 (770)
++++|+++|+++.+|+.++++.++++|+. +|. .+++|.+| ++++++.+. +. +.. +++
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~----------------~~~-~~~~p~~g-~~i~~l~~~--~~-~~~--~~g 58 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH----------------PWL-LPFLPLAG-LLIGYLYQK--FG-KNS--EKG 58 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hHH-HHHHHHHH-HHHHHHHHH--hC-ccc--CCC
Confidence 68999999999999999999999987631 343 34567654 455554322 11 222 235
Q ss_pred hhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHHHHHHHH
Q 004181 175 VQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIGKSIAKG 254 (770)
Q Consensus 175 i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~iga~ig~~ 254 (770)
++++++....+ ++...++....|++++.+++++|+|+|||||++|+|+++|++
T Consensus 59 ~~~v~~~~~~~---------------------------~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 59 NNLIIEEIHGP---------------------------EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred hHHHHHHHHcc---------------------------CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 66665321100 011112345679999999999999999999999999999999
Q ss_pred HHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 004181 255 VGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSEVGLGSE 334 (770)
Q Consensus 255 l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~g~~ 334 (770)
++++++.+++++|.+++||+|||++++||||++|++|++|++..+. ++.+.+.+ .++++++++.+++.+.+.+
T Consensus 112 ~~~~~~~~~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~------~~~~~~~~-~~i~~~~a~~v~~~~~~~~ 184 (378)
T cd03682 112 FGRVFKLPEEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGR------LRYSALIP-CLVAAIVADWVSHALGLEH 184 (378)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhh------hhHHHHHH-HHHHHHHHHHHHHHhCCCC
Confidence 9999999888899999999999999999999999999999985321 22344444 6789999999988754555
Q ss_pred CcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHh--ccccc
Q 004181 335 PAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF--PEILY 412 (770)
Q Consensus 335 ~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~--P~~~g 412 (770)
+.|.++.....++.++++++++|++||++|.+|+++..++.+++++. +.+.+++++++|++++++.++. |+..|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~----~~~~~~~~~iggl~~g~~~~~~~~~~~~G 260 (378)
T cd03682 185 THYHIVFIPTLDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR----IKNPYLRPFVGGLLIILLVYLLGSRRYLG 260 (378)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66766543334577889999999999999999999988877665433 2345788999999999988775 45789
Q ss_pred CCHHHHHH-HHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCcccc
Q 004181 413 WGFENVDI-LLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHF 491 (770)
Q Consensus 413 ~G~~~i~~-l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~ 491 (770)
.|++.++. +.+++ .+ ...++.|+++|++|+|+|+|||.|+|++++||++|+++|++++
T Consensus 261 ~g~~~i~~~~~~~~-----~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~~~~------------ 319 (378)
T cd03682 261 LGTPLIEDSFFGGT-----VY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAPILG------------ 319 (378)
T ss_pred CCHHHHHHHHhcCC-----ch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHHHHC------------
Confidence 99998887 44332 12 2346899999999999999999999999999999999998764
Q ss_pred ccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCcchHHHHHHHHHHHHHHhh
Q 004181 492 SILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 492 ~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~~ 550 (770)
.++..|+++||+|++++++|+|+|++++++|+|| ++.++|+|+++++|+.++.
T Consensus 320 -----~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~ 372 (378)
T cd03682 320 -----LPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG 372 (378)
T ss_pred -----CCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC
Confidence 1467899999999999999999999999999999 5788999999999988764
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=5.2e-50 Score=444.89 Aligned_cols=384 Identities=15% Similarity=0.232 Sum_probs=294.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004181 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (770)
Q Consensus 88 ~~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~ 167 (770)
-..+++.++++|+++|+++.+|+.+++++++++|+..+.. ... ....+|+ .+++|.+||++++++.++.+ .
T Consensus 9 ~~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~----~~~-~~~~~~~-~~~~~~~gGllvgll~~~~~---~ 79 (414)
T PRK03655 9 MLLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGT----LGI-AQDSPLW-IIGMLTLTGIAVGLVIRFSP---G 79 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----ccc-ccccchH-HHHHHHHHHHHHHHHHHHcC---C
Confidence 3577899999999999999999999999999999876532 111 1112343 45788999999999865321 1
Q ss_pred CCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004181 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (770)
Q Consensus 168 ~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~i 247 (770)
+ .|+ .|++..... .+.+ ......|++++++++++|+|+|||||++|+
T Consensus 80 -~-~G~-~~~~~~~~~-----------------------------~~~~-~~~~~~~~~~~~l~l~~G~S~GrEGP~Vqi 126 (414)
T PRK03655 80 -H-AGP-DPATEPLIG-----------------------------APVP-PSALPGLLLALILGLAGGVSLGPEHPIMTV 126 (414)
T ss_pred -C-CCC-hHHHHHHhc-----------------------------CCCC-ccHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 1 122 233221100 0011 123456889999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHH
Q 004181 248 GKSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVS 327 (770)
Q Consensus 248 ga~ig~~l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~ 327 (770)
||+++++++|+++ ++.++|+++.||+|||+||+||||++|++|++|++.+++.. .......++ +++++++..++
T Consensus 127 Ga~igs~~~r~~~-~~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~----~~~~~~~~~-v~aa~~a~~v~ 200 (414)
T PRK03655 127 NIALAVAIGARLL-PRVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEV----PLWDRLFAP-LMAAAAGALTT 200 (414)
T ss_pred HHHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhH----HHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999884 33566788999999999999999999999999998765321 001122333 35666677777
Q ss_pred hhhcCCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHh
Q 004181 328 EVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMF 407 (770)
Q Consensus 328 ~~~~g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~ 407 (770)
+...+....|++++++..+..+++.++++|++||++|.+|++......++++ +.+.| ++++.++|+++++++++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~----~~~~p-~~~~~lgGl~vg~l~l~~ 275 (414)
T PRK03655 201 GLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMH----RLKNP-VLVLGIGGFILGILGVIG 275 (414)
T ss_pred HHhCCCCcceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccc-hHHHHHHHHHHHHHHHHh
Confidence 7665544444555555556678899999999999999999987766554443 23334 456789999999999876
Q ss_pred -cccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCC
Q 004181 408 -PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSN 486 (770)
Q Consensus 408 -P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~ 486 (770)
|+.+|+||+.++.++++. +.+...++.++++|+++|++|+++|+|||+|+|++++||++|..++.+++ .
T Consensus 276 ~~~~~g~Gy~~i~~~~~~~----~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l~p----~-- 345 (414)
T PRK03655 276 GPLTLFKGLDEMQQMAANQ----AFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAHVP----A-- 345 (414)
T ss_pred CCccccCCHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHhcc----C--
Confidence 778999999999887653 24666777789999999999999999999999999999999999888642 1
Q ss_pred CccccccccccchHHHHHHHHHHHHHHHcC----chHHHHHHHHHHhCCcchHHHHHHHHHHHHHHh
Q 004181 487 PTIHFSILEVASPQAYGLVGMAATLAGVCQ----VPLTSVLLLFELTQDYRIVLPLLGAVGLSSWFT 549 (770)
Q Consensus 487 ~~~~~~~~~~~~p~~~alvGaaA~la~~~~----aPls~~vi~~Eltg~~~~~lPlm~a~~ia~~v~ 549 (770)
.++...+++||+|++++++| +|+|++++++||| ++|+|++++++.|+.
T Consensus 346 ----------~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 346 ----------VPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred ----------CChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 35677889999999999999 6999999999999 899999999999886
No 19
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.78 E-value=1.4e-18 Score=175.56 Aligned_cols=252 Identities=17% Similarity=0.150 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHhC-------Ccc-hHHHHHHHHHHHHHHhhhccccccchhhHHH-hh-hc
Q 004181 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ-------DYR-IVLPLLGAVGLSSWFTSGQMRRRDVKETKVA-VH-AN 568 (770)
Q Consensus 499 p~~~alvGaaA~la~~~~aPls~~vi~~Eltg-------~~~-~~lPlm~a~~ia~~v~~~~~~~~~~~~~~~~-~~-~~ 568 (770)
.+.....+++++++--+-.|-++++-+.-+.| +|. .+.|+.+.+++-. .-.+.++.-....|+. +. ..
T Consensus 109 ~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv--~~a~lynnl~~r~YPh~~~~p~ 186 (382)
T COG3448 109 SGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILV--GLALLYNNLTRRTYPHHWLSPP 186 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHH--HHHHHHHHHhcCCCCCccCCCc
Confidence 34555667778777777677777776666544 344 5678776555422 2222222211122222 11 12
Q ss_pred cccccchhhhccccccCCcccccc---cchhhhhcc-ccccccccccccchhhhhhccccccccccccceeEEeCCCCHH
Q 004181 569 TNRKRQFEIYTSRTRGLSSSDLLA---EEEPYAINL-CEVESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLI 644 (770)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~dll~---~~~~~~~~l-~~~~s~~~l~d~~~~~~~~l~~i~V~diM~~~~~~v~~~~tl~ 644 (770)
.+...+.+..|.+..+...-|+-. +.-+++..- .+++..+. +............++..|+|+++++++++++++.
T Consensus 187 an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr-~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~d 265 (382)
T COG3448 187 ANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLR-ETELQALRRRMGELTCADIMSRDVVTVSTDTSID 265 (382)
T ss_pred ccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHH-HHHHHHHHHHhccccHHHhcCccceecCCcCChH
Confidence 223334445555544444444211 100111100 01111100 0001122334556799999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhh-hhccccccccccccccCCCCccCCeEeCCCCCHHHHHH
Q 004181 645 EALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA-KTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALI 723 (770)
Q Consensus 645 eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~-~~~~~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~ 723 (770)
++.++|.+++.+.+||+|++.+++|+|+.+|+.+....... +-.......++.+|++ +..++.+|++..+.+.
T Consensus 266 hA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~------~v~tv~pdtpa~~lvp 339 (382)
T COG3448 266 HARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT------PVVTVRPDTPAVELVP 339 (382)
T ss_pred HHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC------cceeecCCCcHHHHHH
Confidence 99999999999999999999999999999999874321111 0112345568999997 7899999999999999
Q ss_pred HHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHH
Q 004181 724 LMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALA 764 (770)
Q Consensus 724 ~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~ 764 (770)
++.+.+.+++||+|+ +|+++||||..|++.++.+..
T Consensus 340 ~lad~g~H~lpvld~-----~g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 340 RLADEGLHALPVLDA-----AGKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred HhhcCCcceeeEEcC-----CCcEEEEeeHHHHHHHHHHHH
Confidence 999999999999998 899999999999999865443
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.76 E-value=1.1e-17 Score=195.70 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh-hcCCch---hHHHHHHHHHHHHHHHHh-cccc-cCCHHHHH
Q 004181 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDNL----QK-DNGIPK---AVFPVMGGLAVGLIALMF-PEIL-YWGFENVD 419 (770)
Q Consensus 350 l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~----~~-~~~~~~---~~~~~l~gl~vg~i~~~~-P~~~-g~G~~~i~ 419 (770)
+...+++|+++|+++.+|..+..+..+++... .. ....++ .+.|++||++++++..+. +... +.+.+.++
T Consensus 25 ~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 25 LIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 45678999999999999999888877664321 11 011222 234667788887765443 3333 44555565
Q ss_pred HHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccch
Q 004181 420 ILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASP 499 (770)
Q Consensus 420 ~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p 499 (770)
...++. ..++. ...+.|++++.+|+|+|+|.|.++|+..+||++|..+++.++. +....
T Consensus 105 ~~~~~~---~~~~~----~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~~~~~--------------~~~~~ 163 (574)
T PRK01862 105 AVALGD---GVVPV----RQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGRFAHF--------------DPPRL 163 (574)
T ss_pred HHHcCC---CCCCh----HHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHHHhCC--------------CHHHH
Confidence 554332 22333 3456699999999999999999999999999999999998763 12345
Q ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHh-CCc--chHHHHHHHHHHHHHHhhhccccccch
Q 004181 500 QAYGLVGMAATLAGVCQVPLTSVLLLFELT-QDY--RIVLPLLGAVGLSSWFTSGQMRRRDVK 559 (770)
Q Consensus 500 ~~~alvGaaA~la~~~~aPls~~vi~~Elt-g~~--~~~lPlm~a~~ia~~v~~~~~~~~~~~ 559 (770)
..+..+|+||.+++++++|++++++.+|.+ +++ +.+.|.++++++++++++.....++.|
T Consensus 164 r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~~g~~~~~ 226 (574)
T PRK01862 164 RLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREFAGYQPPY 226 (574)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 678899999999999999999999999975 554 578999999999998887655445444
No 21
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.72 E-value=6.9e-17 Score=180.15 Aligned_cols=183 Identities=22% Similarity=0.256 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh----cCCc---hhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCcc
Q 004181 357 GVLCGLISLTLSRCTTYMLAIVDNLQKD----NGIP---KAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVK 429 (770)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~----~~~~---~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~ 429 (770)
|+++|+++.+|.++..+..+++.+.... ...+ ..+.+++++++++++....|...|.|.+.+.+.++++. .
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~~g~G~~~v~~~~~~~~--~ 78 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPARGHGIPEVIEAIALGG--G 78 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHhCC--C
Confidence 6889999999999998888776554221 0122 23567888899988887777688899999877776431 1
Q ss_pred CccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHH
Q 004181 430 GLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAA 509 (770)
Q Consensus 430 ~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA 509 (770)
.. .....+.|++++.+|+++|.|+|.++|++++||++|..+++.++. +..+...++.+||+|
T Consensus 79 ~~----~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~~~~~--------------~~~~~~~l~~~G~aa 140 (383)
T cd00400 79 RL----PLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGRRLRL--------------SRNDRRILVACGAAA 140 (383)
T ss_pred CC----CHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHH
Confidence 11 244678999999999999999999999999999999999998753 124577899999999
Q ss_pred HHHHHcCchHHHHHHHHHHhCCcc---hHHHHHHHHHHHHHHhhhccccccch
Q 004181 510 TLAGVCQVPLTSVLLLFELTQDYR---IVLPLLGAVGLSSWFTSGQMRRRDVK 559 (770)
Q Consensus 510 ~la~~~~aPls~~vi~~Eltg~~~---~~lPlm~a~~ia~~v~~~~~~~~~~~ 559 (770)
.+++++|+|++++++++|++++.. .+.|.++++.+++.+++.+..+++.|
T Consensus 141 glaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~ 193 (383)
T cd00400 141 GIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLFGAEPAF 193 (383)
T ss_pred HHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCee
Confidence 999999999999999999987554 78999999999998887654444433
No 22
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.70 E-value=1.4e-16 Score=178.59 Aligned_cols=183 Identities=24% Similarity=0.279 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCchhH----HHHHHHHHHHHHHH-HhcccccCCHHHHHHHHccCCCc
Q 004181 356 LGVLCGLISLTLSRCTTYMLAIVDNLQKDN--GIPKAV----FPVMGGLAVGLIAL-MFPEILYWGFENVDILLESRPFV 428 (770)
Q Consensus 356 lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~--~~~~~~----~~~l~gl~vg~i~~-~~P~~~g~G~~~i~~l~~~~~~~ 428 (770)
+|+++|+++.+|.++..++.+++.+..... ..++++ .+.++|++++.+.. +.|+..|+|++.+...++++.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~~-- 78 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGLL-- 78 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCCC--
Confidence 488999999999999999888776544321 111222 22445566665544 479999999999999887642
Q ss_pred cCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 004181 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (770)
Q Consensus 429 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaa 508 (770)
.. ......+.|++++.+|+|+|+|+|.++|++++||++|..+++.++. ...+...+..+|||
T Consensus 79 -~~---~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~~~~~--------------~~~~~~~l~~~g~a 140 (402)
T cd01031 79 -PP---NWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSKWFKT--------------SPEERRQLIAAGAA 140 (402)
T ss_pred -Cc---ccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHH
Confidence 11 1234678999999999999999999999999999999999987753 12357789999999
Q ss_pred HHHHHHcCchHHHHHHHHH-HhCCcc--hHHHHHHHHHHHHHHhhhccccccc
Q 004181 509 ATLAGVCQVPLTSVLLLFE-LTQDYR--IVLPLLGAVGLSSWFTSGQMRRRDV 558 (770)
Q Consensus 509 A~la~~~~aPls~~vi~~E-ltg~~~--~~lPlm~a~~ia~~v~~~~~~~~~~ 558 (770)
|.+++++|+|++++++.+| ++++++ .+.|+++++++++.+++....+++.
T Consensus 141 ag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~~~~~~~ 193 (402)
T cd01031 141 AGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLFFGLGPV 193 (402)
T ss_pred HhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCCce
Confidence 9999999999999999999 677654 7999999999998887655444443
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.69 E-value=8e-16 Score=174.24 Aligned_cols=189 Identities=17% Similarity=0.213 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCchhHHHHHHHHHHHHHH-----HHhcccccCCHHHHHHHH
Q 004181 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDN---GIPKAVFPVMGGLAVGLIA-----LMFPEILYWGFENVDILL 422 (770)
Q Consensus 351 ~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~gl~vg~i~-----~~~P~~~g~G~~~i~~l~ 422 (770)
.+.+++|+++|+++.+|.++.+++.+++.+..... +++.+..+++.+.+.+.+. .+.|+..|+|++.++..+
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~~l 81 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEGAL 81 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHH
Confidence 56789999999999999999999888776543221 1222333344333333332 245999999999999888
Q ss_pred ccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHH
Q 004181 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (770)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 502 (770)
++.. ..+ .......|++.+.+++|+|.|+|.++|++++||++|..+++.++.. +..+...+
T Consensus 82 ~~~~---~~~---~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~~~~~~-------------~~~~~~~l 142 (438)
T PRK05277 82 EGLR---PVR---WWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLDIFRLR-------------SDEARHTL 142 (438)
T ss_pred cCCC---ccc---hHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHHcccC-------------CHHHHHHH
Confidence 7641 122 1234578999999999999999999999999999999999887631 12356789
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHH-HhCC--cc--hHHHHHHHHHHHHHHhhhccccccc
Q 004181 503 GLVGMAATLAGVCQVPLTSVLLLFE-LTQD--YR--IVLPLLGAVGLSSWFTSGQMRRRDV 558 (770)
Q Consensus 503 alvGaaA~la~~~~aPls~~vi~~E-ltg~--~~--~~lPlm~a~~ia~~v~~~~~~~~~~ 558 (770)
..+||||.+++++|+|++++++++| ++++ ++ .+.|+++++++++.+.+.+..+++.
T Consensus 143 i~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~~g~~~~ 203 (438)
T PRK05277 143 LAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFNGEQAV 203 (438)
T ss_pred HHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 9999999999999999999999999 5653 33 4799999999988887654443333
No 24
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=1.5e-16 Score=158.60 Aligned_cols=124 Identities=24% Similarity=0.317 Sum_probs=114.3
Q ss_pred hccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccc
Q 004181 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMC 699 (770)
Q Consensus 620 ~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim 699 (770)
...+.+|+++|++++.++.+++|++|+.+.+.+++.+..||+|++ +++|++|..|+.+++.+.. .+..|+|+|
T Consensus 168 siPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~------~~~kV~~~M 240 (294)
T COG2524 168 SIPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGN------LDAKVSDYM 240 (294)
T ss_pred ecCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCC------ccccHHHHh
Confidence 355678999999999999999999999999999999999999965 9999999999999987442 367799999
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 700 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 700 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
.+ +++++++|+.+.||+++|.++++.++.|+|+ +|+++|+|||+||++.+.
T Consensus 241 ~k------~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 241 RK------NVITINEDEDIYDAIRLMNKNNVGRLLVTDS-----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred cc------CCceEcCchhHHHHHHHHHhcCcceEEEEcc-----CCcEEEEEehHHHHHHhh
Confidence 99 8999999999999999999999999999997 899999999999998764
No 25
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=9.4e-16 Score=170.69 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004181 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (770)
Q Consensus 89 ~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~ 168 (770)
+..+...+++|+++|+++.+|++.+.+.++++... .+ .++.+.+||++++++..+.+ +.
T Consensus 202 ~~~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~~~----------------~~--~~~~~~l~gl~~g~~~~~~p---~~ 260 (388)
T cd01033 202 TPLLIWALLAGPVLGVVAAGFRRLSQAARAKRPKG----------------KR--ILWQMPLAFLVIGLLSIFFP---QI 260 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cc--hHHHHHHHHHHHHHHHHHHH---HH
Confidence 44567789999999999999999999888764210 01 12335688888888765433 33
Q ss_pred CCCCc-chhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004181 169 DDDDD-DVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (770)
Q Consensus 169 ~~~g~-~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~i 247 (770)
.|.|. .+..+.+..+ .........+.|++++.+|+++|+|+|.|+|++.+
T Consensus 261 ~G~G~~~i~~~~~~~~-----------------------------~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~i 311 (388)
T cd01033 261 LGNGRALAQLAFSTTL-----------------------------TLSLLLILLVLKIVATLLALRAGAYGGLLTPSLAL 311 (388)
T ss_pred hCCcHHHHHHHHcCCc-----------------------------hHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHH
Confidence 45552 2222211100 01111345689999999999999999999999999
Q ss_pred HHHHHHHHHhhccC--CccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHH
Q 004181 248 GKSIAKGVGNLFDR--RPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASV 325 (770)
Q Consensus 248 ga~ig~~l~~~~~~--~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 325 (770)
|+++|+.++++++. ++.+.+.++.|||||++++++|+|+++++|++|++..+ +. ...++++++++|+.
T Consensus 312 Ga~~G~~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~---------~~-~l~Pl~ia~~~a~~ 381 (388)
T cd01033 312 GALLGALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQN---------PL-FLIPLMLAVAGAVA 381 (388)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCC---------HH-HHHHHHHHHHHHHH
Confidence 99999999998652 34456789999999999999999999999999997522 13 34457899999999
Q ss_pred HHhhh
Q 004181 326 VSEVG 330 (770)
Q Consensus 326 v~~~~ 330 (770)
+++.+
T Consensus 382 vs~~~ 386 (388)
T cd01033 382 VSRFI 386 (388)
T ss_pred HHHHh
Confidence 99864
No 26
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.68 E-value=1.1e-15 Score=170.41 Aligned_cols=191 Identities=18% Similarity=0.136 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004181 89 SGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSLD 168 (770)
Q Consensus 89 ~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~~ 168 (770)
+..++..+++|+++|+++.+|++.+.+.++.+.+... . + .+.+.++.+.++|++++.+.++.+ +..
T Consensus 199 ~~~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~--------~-~---~~~~~~~~~~~~gl~~~~~~~~~~--~~~ 264 (390)
T cd01034 199 GEAWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVR--------R-F---RRRRPVLFAALCGLALALIGLVSG--GLT 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------c-c---cchhhHHHHHHHHHHHHHHHHhCC--Ccc
Confidence 4456778999999999999999999988876543210 0 0 011123445567777776654321 122
Q ss_pred CCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHHH
Q 004181 169 DDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEIG 248 (770)
Q Consensus 169 ~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~ig 248 (770)
.|.| .+++++.... +....+...+.|.+++++|+++|+++|+|+|++++|
T Consensus 265 ~G~G--~~~i~~~~~~----------------------------~~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iG 314 (390)
T cd01034 265 FGTG--YLQARAALEG----------------------------GGGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVG 314 (390)
T ss_pred ccCc--HHHHHHHHhC----------------------------CCcccHHHHHHHHHHHHHHHHcCCCcceechHHHHH
Confidence 3333 3333321000 001112356799999999999999999999999999
Q ss_pred HHHHHHHHhhccCCccchhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHHHHHHh
Q 004181 249 KSIAKGVGNLFDRRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIASVVSE 328 (770)
Q Consensus 249 a~ig~~l~~~~~~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~ 328 (770)
|.+|+.++++++. .+.+.++.+||||++|+++|+|+++++|++|++... ....++++++++|+.+++
T Consensus 315 a~~G~~~~~~~~~--~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~-----------~~l~p~lia~~~A~~v~~ 381 (390)
T cd01034 315 AGLGSLLAALLGS--VSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQ-----------QMLLPLLAAALLASGVSR 381 (390)
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCh-----------hhHHHHHHHHHHHHHHHH
Confidence 9999999999864 356799999999999999999999999999999632 234457889999999998
Q ss_pred hhcCCCCcc
Q 004181 329 VGLGSEPAF 337 (770)
Q Consensus 329 ~~~g~~~~f 337 (770)
.+ +.++.|
T Consensus 382 ~~-~~~~iY 389 (390)
T cd01034 382 LV-CPEPLY 389 (390)
T ss_pred Hh-CCCCCC
Confidence 85 555655
No 27
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.60 E-value=3.5e-14 Score=159.27 Aligned_cols=191 Identities=20% Similarity=0.104 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004181 88 NSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACGGFIVSILNQLRYALSL 167 (770)
Q Consensus 88 ~~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~gglivg~l~~~~~~~~~ 167 (770)
.+..+.+.+++|+++|+++.+|++++++.++++.+. + . .+| +.+.+||++++.+..+.+ +
T Consensus 217 ~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~-~--------~----~~~----~~~~lggli~g~l~~~~p---~ 276 (418)
T PRK01610 217 QARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSL-K--------L----APP----WQLALGGLIVGLLSLFTP---A 276 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-c--------c----chh----HHHHHHHHHHHHHHHHhh---H
Confidence 344466789999999999999999999888765321 0 0 122 346889999998865433 3
Q ss_pred CCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccccchhhhhHHHHHHHHHHHHHHhcCCccCCchhHHHH
Q 004181 168 DDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIYYDYLKIAFQPLLKAVAACITLGTGNSLGPEGPSVEI 247 (770)
Q Consensus 168 ~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~~~~~lg~G~s~G~EgP~v~i 247 (770)
..|.|. +.++..... +..........+.|++++.+|+++|+++|.++|++.+
T Consensus 277 ~~G~G~--~~i~~~~~~--------------------------~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~i 328 (418)
T PRK01610 277 VWGNGY--SVVQSFLTA--------------------------PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFV 328 (418)
T ss_pred HhCCcH--HHHHHHHcC--------------------------ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHH
Confidence 345551 212110000 0001111123578999999999999999999999999
Q ss_pred HHHHHHHHHhhccC---Cccc-hhhHhhcccchhHHhhccchhhHHHHHHhhcccccccccchhhhhhhHHHHHHHHHHH
Q 004181 248 GKSIAKGVGNLFDR---RPRR-KVSLVAAGSAAGISSGFNAAVAGCFFAVESVIWPSSAADSSASLAYTTSMVILSAVIA 323 (770)
Q Consensus 248 ga~ig~~l~~~~~~---~~~~-~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 323 (770)
|+++|+.++++++. +... .-.+..+||+|.+++++|+|++++++++|++.. .+..+++++++++|
T Consensus 329 Ga~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~-----------~~~~~p~~ia~~ia 397 (418)
T PRK01610 329 GLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGE-----------YQLLPGLLIACVIA 397 (418)
T ss_pred HHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCC-----------HhHHHHHHHHHHHH
Confidence 99999999998751 1222 335667999999999999999999999999753 12355678899999
Q ss_pred HHHHhhhcCCCCccc
Q 004181 324 SVVSEVGLGSEPAFK 338 (770)
Q Consensus 324 ~~v~~~~~g~~~~f~ 338 (770)
+++++.+ .+++.|+
T Consensus 398 ~~vs~~~-~~~siy~ 411 (418)
T PRK01610 398 SVISRTL-RRDSIYR 411 (418)
T ss_pred HHHHHHh-CCCCchH
Confidence 9999874 4546664
No 28
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.59 E-value=2.2e-14 Score=159.37 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHccCCCccCcc
Q 004181 353 YLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILLESRPFVKGLT 432 (770)
Q Consensus 353 ~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~ 432 (770)
.+++|+++|+++.+|+++..++.+++.+ .++. .....++|++++.+...+|+..+.|.+.+.+.++++. ...+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~-~~~~p~~g~~i~~l~~~~~~~~~~g~~~v~~~~~~~~--~~~~ 74 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWL-LPFLPLAGLLIGYLYQKFGKNSEKGNNLIIEEIHGPE--EGIP 74 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHH-HHHHHHHHHHHHHHHHHhCcccCCChHHHHHHHHccC--CCCc
Confidence 5789999999999999998887765332 1111 1222345667766666777777788888877776531 1223
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHH
Q 004181 433 ADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLA 512 (770)
Q Consensus 433 ~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la 512 (770)
. ...+.|++++.+++++|.|+|.+.|++.+|+++|..+++.++. +..+...+..+||+|.++
T Consensus 75 ~----~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~~~~~--------------~~~~~r~l~~~g~aAgla 136 (378)
T cd03682 75 L----RMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGRVFKL--------------PEEDRRILLIAGIAAGFA 136 (378)
T ss_pred h----HHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 2 2355799999999999999999999999999999999997653 123456789999999999
Q ss_pred HHcCchHHHHHHHHHHh--C--CcchHHHHHHHHHHHHHHhhhc
Q 004181 513 GVCQVPLTSVLLLFELT--Q--DYRIVLPLLGAVGLSSWFTSGQ 552 (770)
Q Consensus 513 ~~~~aPls~~vi~~Elt--g--~~~~~lPlm~a~~ia~~v~~~~ 552 (770)
+++|+|++++++.+|++ + +++.++|.++++++++.+++.+
T Consensus 137 a~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 137 AVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred HHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987 3 3567889999999998887543
No 29
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.54 E-value=2.7e-14 Score=132.63 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=110.0
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccccc
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~ 701 (770)
..++++++|+++++.+++++++.+++++|.+++++.+||+++ ++++|-||..|+.+...+.. +...+..++++|..
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~vM~e 138 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVREVMGE 138 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHHHhcC
Confidence 567999999999999999999999999999999999999995 99999999999999876432 34667889999987
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
..++|++|+++..+.+++..++ .+.|++ +|+++||||+.|+++..++
T Consensus 139 ------~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e------~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 139 ------PFPTVSPDESLNVISQLLEEHP--AVLVVE------NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------CCCcCCCCCCHHHHHHHHhhCC--eEEEEe------CCceEEEEeHHHHHHHHhc
Confidence 7889999999999999998776 488886 7999999999999998764
No 30
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=3.6e-14 Score=154.95 Aligned_cols=122 Identities=21% Similarity=0.274 Sum_probs=107.9
Q ss_pred ccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccc
Q 004181 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMC 699 (770)
Q Consensus 622 ~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim 699 (770)
..++|+|+|.+ +++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..... ....+.+++++|
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----~~~~~~~v~~im 275 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----IDLRQASIADVM 275 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----CCcccCCHHHhc
Confidence 77899999997 899999999999999999988888888899999999999999998754321 123356789999
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 700 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 700 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
++ ++.++.+++++.+|++.|.+++.+++||+| +++++|+||++|++++
T Consensus 276 ~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~------~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 TP------GGIRVRPGILAVDALNLMQSRHITSVLVAD------GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CC------CCEEECCCCCHHHHHHHHHHCCCcEEEEee------CCEEEEEEEhHHhHhc
Confidence 88 789999999999999999999999999998 5799999999999875
No 31
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.53 E-value=4.1e-14 Score=154.23 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=111.3
Q ss_pred hhhhcc---ccccccccccc--eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccc
Q 004181 617 VEELKR---RVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSK 691 (770)
Q Consensus 617 ~~~~l~---~i~V~diM~~~--~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~ 691 (770)
+...+. .++|+++|.++ ++++++++++.++.+.|.+++...+||+|++|+++|+|+.+|+.+.+.... ..
T Consensus 187 ~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~-----~~ 261 (321)
T PRK11543 187 PAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGG-----AL 261 (321)
T ss_pred CCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCC-----Cc
Confidence 344566 78999999998 999999999999999999888899999999999999999999987653211 12
Q ss_pred ccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 692 KLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 692 ~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+.+++++|++ ++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|++++
T Consensus 262 ~~~v~~im~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTR------GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 3458899987 7889999999999999999999999999997 7899999999999874
No 32
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.52 E-value=8.1e-14 Score=158.51 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h---hcCC-c----hhHHHHHHHHHHHHHHH-HhcccccCCHHHH
Q 004181 349 ELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQ-K---DNGI-P----KAVFPVMGGLAVGLIAL-MFPEILYWGFENV 418 (770)
Q Consensus 349 ~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~-~---~~~~-~----~~~~~~l~gl~vg~i~~-~~P~~~g~G~~~i 418 (770)
.+.+.+++|+++|+++.+|..+..++.+++.... . .... . ....+++++++.+++.. +.|+..|+|.+.+
T Consensus 32 ~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a~GsGip~v 111 (466)
T cd03685 32 KWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTAAGSGIPEV 111 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHH
Confidence 3456799999999999999999988877643321 1 1111 1 11345566777776654 5599999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004181 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (770)
Q Consensus 419 ~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (770)
+..+++... +...-...++.|++.+.+++|+|.|.|.++|++.+||++|..+++.....+....+.+.. ..+..+
T Consensus 112 ~~~l~g~~~----~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~ 186 (466)
T cd03685 112 KGYLNGVKI----PHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRY-FRNDRD 186 (466)
T ss_pred HHHHcCcCc----cccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhh-ccCHHH
Confidence 998875421 111123457799999999999999999999999999999999997431000000000000 002245
Q ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHhC---CcchHHHHHHHHHHHHHHh
Q 004181 499 PQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFT 549 (770)
Q Consensus 499 p~~~alvGaaA~la~~~~aPls~~vi~~Eltg---~~~~~lPlm~a~~ia~~v~ 549 (770)
...+..+||||.+++++++|++++++++|.+. +.+...+.+++++++..++
T Consensus 187 ~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 187 KRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999765 2234445554444444443
No 33
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=2.5e-13 Score=123.75 Aligned_cols=109 Identities=22% Similarity=0.270 Sum_probs=94.3
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++.+.++|+|++++++|+|+..|+.+... ....+.+++++|.. ++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~------~~~~~~~v~~~~~~------~~~~v 69 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGP------NDYETLKVCEVYIV------PVPIV 69 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcc------ccccccChhheeec------CCcEE
Confidence 4578899999999999999888999999999999999999999986421 11123457888876 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.+++++|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 70 ~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~~di~~ 110 (111)
T cd04603 70 YCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYERELLR 110 (111)
T ss_pred CCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEhHHhhc
Confidence 99999999999999999999999996 799999999999975
No 34
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.49 E-value=6.7e-13 Score=149.83 Aligned_cols=145 Identities=29% Similarity=0.385 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHH--HHHHHhcccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHH
Q 004181 390 AVFPVMGGLAVG--LIALMFPEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIG 467 (770)
Q Consensus 390 ~~~~~l~gl~vg--~i~~~~P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iG 467 (770)
++.+.++|++++ .+..+.|+.-|+|.+++.+.+++.. ..++ .....+|++++.+++++|++.|++.|+.++|
T Consensus 67 ~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~~i~a~~~~~--~~~~----~~~~~vk~~~~~l~i~sG~s~GrEGP~vqig 140 (443)
T COG0038 67 PLVPALGGLLVGALLVYKFAPEARGSGIPQAIEALHGRK--GRIS----PRVLPVKLVATLLTIGSGASLGREGPSVQIG 140 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCChhHHHHHHhcCC--Cccc----HHHHHHHHHHHHHHHhcCcccccccHHHHHH
Confidence 344568888888 3445789999999999999888741 1222 3446679999999999999999999999999
Q ss_pred HHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhC----CcchHHHHHHHHH
Q 004181 468 AATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ----DYRIVLPLLGAVG 543 (770)
Q Consensus 468 a~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg----~~~~~lPlm~a~~ 543 (770)
+++|+.+++.++. +..+......+|+||.+++++++|+++++|++|+-. ++..+.|++++++
T Consensus 141 a~~g~~~~~~l~~--------------~~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~ 206 (443)
T COG0038 141 AAIGSLLGRLLKL--------------SREDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAV 206 (443)
T ss_pred HHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999999999864 245678899999999999999999999999999743 3568999999999
Q ss_pred HHHHHhhhccc
Q 004181 544 LSSWFTSGQMR 554 (770)
Q Consensus 544 ia~~v~~~~~~ 554 (770)
++..+...+..
T Consensus 207 va~~v~~~~~~ 217 (443)
T COG0038 207 VALLVAGLFGG 217 (443)
T ss_pred HHHHHHHHcCC
Confidence 99988876543
No 35
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=3.7e-13 Score=123.18 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=96.3
Q ss_pred eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEeC
Q 004181 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTAT 713 (770)
Q Consensus 634 ~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V~ 713 (770)
+.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+...... ....+.+++++|.. ++.+++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~---~~~~~~~v~~~~~~------~~~~v~ 73 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCG---GPGCTAPVENVMTR------AVVSCR 73 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcC---CCcccCCHHHHhcC------CCeeEC
Confidence 567899999999999999999999999999999999999999987653211 11234567888877 788999
Q ss_pred CCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 714 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 714 ~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 74 ~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 74 PGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNARDALK 113 (114)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEhHhhcc
Confidence 9999999999999999999999996 789999999999875
No 36
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.48 E-value=3.5e-13 Score=151.86 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhHHHHHHHHHHHHHHH-HhcccccCCHHHHHHHH
Q 004181 351 PLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGI-------PKAVFPVMGGLAVGLIAL-MFPEILYWGFENVDILL 422 (770)
Q Consensus 351 ~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~gl~vg~i~~-~~P~~~g~G~~~i~~l~ 422 (770)
.+.+++|++.|+++.+|..+.+++.+++..+.+.... .+.+.|++++++++.+.. +.|+..|+|-++++..+
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l 82 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMKTIL 82 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHH
Confidence 4567999999999999999999888776665433111 112345666777777664 78999999999998888
Q ss_pred ccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHH
Q 004181 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (770)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 502 (770)
++... +...-....+.|++.+.+++|+|+|.|.++|+.++||++|..+++..+..... ..+..+...+
T Consensus 83 ~g~~~----~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~~~~~~~~--------~~~~~~rr~L 150 (426)
T cd03683 83 RGVVL----PEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKLTTFFSGI--------YENESRRMEM 150 (426)
T ss_pred cCCCc----cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhccccccc--------ccCHHHHHHH
Confidence 76421 11222455778999999999999999999999999999999999877531000 0012334568
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHh-CCc--chHHHHHHHHHHHHHHhh
Q 004181 503 GLVGMAATLAGVCQVPLTSVLLLFELT-QDY--RIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 503 alvGaaA~la~~~~aPls~~vi~~Elt-g~~--~~~lPlm~a~~ia~~v~~ 550 (770)
..+|+||.++++++||++++++.+|.. .++ +.+.|.+++++++..+++
T Consensus 151 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~ 201 (426)
T cd03683 151 LAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFR 201 (426)
T ss_pred HHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999965 333 467888888888877654
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.47 E-value=4e-13 Score=152.03 Aligned_cols=125 Identities=23% Similarity=0.263 Sum_probs=112.2
Q ss_pred hhhhhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccc
Q 004181 616 EVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLV 695 (770)
Q Consensus 616 ~~~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V 695 (770)
...+.++.++++++|.++++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+... ..+.++
T Consensus 81 ~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~----------~~~~~V 150 (479)
T PRK07807 81 VVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV----------DRFTQV 150 (479)
T ss_pred HHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC----------ccCCCH
Confidence 4556688899999999999999999999999999999999999999999999999999999532 012458
Q ss_pred ccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 696 SEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 696 ~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
+++|++ ++.++++++++.+|+++|.+++.+.+||+|+ +++++|+||++||++...
T Consensus 151 ~diMt~------~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 151 RDVMST------DLVTLPAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATI 205 (479)
T ss_pred HHhccC------CceEECCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhh
Confidence 899988 7899999999999999999999999999997 789999999999998654
No 38
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=5e-13 Score=123.41 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=91.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+......... ......+.+.|..++.+..++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v 78 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY---NNLDLTVGEALERRSQDFEGVRTC 78 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcc---ccccCCHHHHHhhcccCCCCCeEE
Confidence 56789999999999999999999999999999999999999999976532211 000111222111111111257899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999996 689999999999975
No 39
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.46 E-value=3.4e-13 Score=151.63 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-------hhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCc
Q 004181 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIP-------KAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFV 428 (770)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~gl~vg~i~-~~~P~~~g~G~~~i~~l~~~~~~~ 428 (770)
|++.|+++.+|..+.++..++++.+....+-. +...+++.+++.+.+. ++.|+..|+|-++++..+++...
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~~- 79 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRIPGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVHL- 79 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCcc-
Confidence 56778888888888888887776555321111 2234555555655554 47899999999999988875311
Q ss_pred cCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHH
Q 004181 429 KGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMA 508 (770)
Q Consensus 429 ~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaa 508 (770)
+...-....+.|++.+.+++|+|.|.|.++|+.++||++|..+++..+............ ..+..+...+..+|+|
T Consensus 80 ---~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~-~~~~~~~r~ll~aGaa 155 (416)
T cd01036 80 ---PMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQL-FRNPRDRRDFLVAGAA 155 (416)
T ss_pred ---cccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhh-ccCHHHHHHHHHHHhh
Confidence 111234457799999999999999999999999999999999999765321000000000 0023456779999999
Q ss_pred HHHHHHcCchHHHHHHHHHHhCC---cchHHHHHHHHHHHHHHhhhc
Q 004181 509 ATLAGVCQVPLTSVLLLFELTQD---YRIVLPLLGAVGLSSWFTSGQ 552 (770)
Q Consensus 509 A~la~~~~aPls~~vi~~Eltg~---~~~~lPlm~a~~ia~~v~~~~ 552 (770)
|.++++++||++++++.+|.+.. .+.+.|.+++++++..+++..
T Consensus 156 AGlaAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 156 AGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred cchhhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999997642 246789999988888776543
No 40
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.45 E-value=1e-12 Score=120.25 Aligned_cols=112 Identities=32% Similarity=0.423 Sum_probs=95.8
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+...+.. ...+..+.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~----~~~~~~~~~~~~~------~~~~v 71 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE----AGEPSAVDEVATP------PLLTV 71 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc----ccccccHHHhccC------CceEE
Confidence 5678899999999999999999999999999999999999999987654211 1123346777876 78899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC--CeEEEEEeHHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR--GQLVGLLDRESIILA 759 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~--g~lvGIIT~~DIl~~ 759 (770)
.+++++.++++.|.+++.+.+||+|+ + |+++|+||++|++++
T Consensus 72 ~~~~~l~~~l~~~~~~~~~~~~Vvd~-----~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 72 HPDEPLAHALDRMASRGLRQLPVVDR-----GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCCCCHHHHHHHHHHcCCceeeEEeC-----CCCCeEEEEEEhHHhhcC
Confidence 99999999999999999999999996 4 799999999999863
No 41
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=9.7e-13 Score=121.20 Aligned_cols=113 Identities=22% Similarity=0.258 Sum_probs=94.7
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+..... ....+..++++|.+ .+++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~----~~~~~~~~~~~~~~----~~~~~~v 73 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGG----ADLQKVPVGVIMTR----MPNITTT 73 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcC----CCccCCCHHHHhCC----CCCcEEE
Confidence 467899999999999999988999999999889999999999998865421 11234557778862 1146799
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC---CeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR---GQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~---g~lvGIIT~~DIl~ 758 (770)
++++++.+++++|.+++.+.+||+|+ + ++++|+||++|+++
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 74 TPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEEEEEEhhheec
Confidence 99999999999999999999999996 4 69999999999875
No 42
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=8.8e-13 Score=117.83 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=84.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|++|.+|+.+... +.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~---------------------------~~~ 54 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---------------------------LVS 54 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee---------------------------eEE
Confidence 46789999999999999999999999999975 89999999999975421 358
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC-CeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~-g~lvGIIT~~DIl~ 758 (770)
+++++++.+|+++|.+++.+++||+|+ + |+++|+||.+|+++
T Consensus 55 v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit~~d~~~ 97 (98)
T cd04618 55 IHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILTSRRILK 97 (98)
T ss_pred eCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEeehhhhhc
Confidence 999999999999999999999999996 5 89999999999975
No 43
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.6e-12 Score=118.74 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=95.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+.+.... ....+.++.++|.. ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~~~~~------~~~~ 72 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEG---RDPDRVNVYEIMTK------PLIS 72 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCC---CCCCccCHHHHhcC------CCee
Confidence 56789999999999999998899999999987 89999999999988654211 12234568888876 6889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 73 v~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~Gvi~~~dl~~ 113 (114)
T cd04630 73 VSPDMDIKYCARLMERTNIRRAPVVE------NNELIGIISLTDIFL 113 (114)
T ss_pred ECCCCCHHHHHHHHHHcCCCEeeEee------CCEEEEEEEHHHhhc
Confidence 99999999999999999999999998 589999999999975
No 44
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.43 E-value=2.3e-12 Score=145.90 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHH-HHhcccccCCHHHHHHHHccCCCccCccHHH
Q 004181 357 GVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVMGGLAVGLIA-LMFPEILYWGFENVDILLESRPFVKGLTADM 435 (770)
Q Consensus 357 Gv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gl~vg~i~-~~~P~~~g~G~~~i~~l~~~~~~~~~~~~~~ 435 (770)
|++.|+++.++..+.+++.+.+....+. ....+.+++++++++.+. .+.|+..|+|-++++..+++... +...
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~~----~~~~ 74 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYCNY--IIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFII----RGFL 74 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCccc----cccc
Confidence 6788999998888877776654433210 112233445666666665 67899999999999888875321 1112
Q ss_pred HHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHc
Q 004181 436 LLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (770)
Q Consensus 436 l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~ 515 (770)
-....+.|++.+.+++++|.|.|.++|+.++||++|..++++++..-. +..+...+..+|+||.+++++
T Consensus 75 ~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~~~~~~~~-----------~~~~~r~li~~GaaAGlaAaF 143 (445)
T cd03684 75 GKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISRLFPKYRR-----------NEAKRREILSAAAAAGVAVAF 143 (445)
T ss_pred cHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHHHHHHhcc-----------CHHHHHHHHHHHHhhhhHHhc
Confidence 244577899999999999999999999999999999999998763211 234567889999999999999
Q ss_pred CchHHHHHHHHHHh-CC--cchHHHHHHHHHHHHHHhhh
Q 004181 516 QVPLTSVLLLFELT-QD--YRIVLPLLGAVGLSSWFTSG 551 (770)
Q Consensus 516 ~aPls~~vi~~Elt-g~--~~~~lPlm~a~~ia~~v~~~ 551 (770)
++|++++++.+|.. .+ .+.+.|.++++++|..+++.
T Consensus 144 ~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~ 182 (445)
T cd03684 144 GAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKS 182 (445)
T ss_pred CCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999964 33 45788999999998877653
No 45
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.6e-12 Score=120.41 Aligned_cols=117 Identities=28% Similarity=0.374 Sum_probs=97.8
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh------ccccccccccccccCCCC
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------SRSKKLLVSEMCSADGET 705 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~------~~~~~~~V~dim~~~~~~ 705 (770)
+++.++++++++.++.+.|.+++++.+||+|++++++|+|+.+|+.+......... ....+..+.++|.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---- 77 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP---- 77 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC----
Confidence 46788999999999999999999999999998899999999999987653211000 01234467888876
Q ss_pred ccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 706 CCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 706 ~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|++++
T Consensus 78 --~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~~di~~~ 124 (124)
T cd04600 78 --PVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQTDLIAA 124 (124)
T ss_pred --CCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEhHHhhcC
Confidence 7889999999999999999999999999997 7899999999999763
No 46
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.41 E-value=1.1e-12 Score=148.78 Aligned_cols=128 Identities=20% Similarity=0.232 Sum_probs=111.3
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHh-----cCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccc
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLA-----EKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLV 695 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~-----~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V 695 (770)
.+..+++++|++++.++++++|+.++++.|++ ++...++|+|++++++|+|+.+|+... ..+.++
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a----------~~~~~v 197 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA----------KPEEIL 197 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC----------CCCCcH
Confidence 34568999999999999999999999999985 334678999999999999999998642 123468
Q ss_pred ccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHHhhhhc
Q 004181 696 SEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALATRKSL 769 (770)
Q Consensus 696 ~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~~~~~l 769 (770)
+++|++ ++.++++++++.++++.|.+++...+||||+ +|+++|+||.+|+++.+.++.+++.+
T Consensus 198 ~~im~~------~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-----~g~lvGiIt~~Dil~~l~~~~~ed~~ 260 (449)
T TIGR00400 198 SSIMRS------SVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-----EGRLVGIVTVDDIIDVIQSEATEDFY 260 (449)
T ss_pred HHHhCC------CCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-----CCeEEEEEEHHHHHHHHHhhhHHHHH
Confidence 999987 7889999999999999999999999999997 89999999999999999887776653
No 47
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.40 E-value=1.9e-12 Score=138.51 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=107.6
Q ss_pred cccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 621 l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
+...+|+++|++ ++.++++++++.++++.+.+++++.+||+|++ ++++|+|+.+|+....... .....+++
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~------~~~~~l~~ 137 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------AEAFSMDK 137 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc------CCcCCHHH
Confidence 556699999998 79999999999999999999999999999876 7999999999998654211 01234678
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRAL 763 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~ 763 (770)
+|.+ +.++++++++.++++.|.+++.+.+||+|+ .|.++|+||++|+++.+-..
T Consensus 138 l~r~-------~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-----~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 138 VLRQ-------AVVVPESKRVDRMLKEFRSQRYHMAIVIDE-----FGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred HcCC-------CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEeEHHHHHHHHhCC
Confidence 8865 568999999999999999999999999997 78999999999999987543
No 48
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.40 E-value=1e-12 Score=136.50 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=110.9
Q ss_pred cccccccc--cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccccc
Q 004181 624 VFVSEVMR--TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (770)
Q Consensus 624 i~V~diM~--~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~ 701 (770)
++|.|+|+ .+..++.++++++|..++..+.+++.+||+|+..+++|+||.+|+... ..+.+++.+|++
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~----------~~~t~ieKVMtk 257 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDK----------KPSTTIEKVMTK 257 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcC----------CCCccHHHHhcc
Confidence 58999999 488999999999999999999999999999999999999999999754 245678999998
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHHh
Q 004181 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALAT 765 (770)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~~ 765 (770)
+|.++.+.+++..+.++|.-.+++.+||+|+ +++++|+|||+|+++.++...+
T Consensus 258 ------np~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 258 ------NPITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred ------CCeeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHHhcc
Confidence 8999999999999999999999999999998 8999999999999999876543
No 49
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=4.9e-12 Score=114.48 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=94.4
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++.++++++++.++++.|.+++.+.+||+|++|+++|+++.+|+.+..... ...+.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~--------~~~~~~~~~~------~~~~ 67 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARD--------KKSVEDIMTR------NVIT 67 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhC--------ccCHHHhcCC------CCeE
Confidence 4677899999999999999999999999999999999999999998765321 1236777766 6889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.++++++++++.|.+++.+.+||+++ +|+++|+||++|+.+
T Consensus 68 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~~di~~ 109 (110)
T cd04605 68 ATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITSEDISK 109 (110)
T ss_pred ECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEHHHhhh
Confidence 999999999999999999999999997 789999999999965
No 50
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.40 E-value=1.5e-12 Score=121.44 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=95.8
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+...+... ..+.+++++|++ ++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im~~------~~~~ 71 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKALYK------QFKR 71 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHhhc------ccee
Confidence 467889999999999999999999999999999999999999999876543221 235679999988 7889
Q ss_pred eCCCCCHHHHHHHHHh---------cCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 712 ATPNMNLLSALILMDR---------YGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 712 V~~d~sL~eal~~m~~---------~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+++++++.++.+++.. .+...+||+|+ +|+++|+||++|++++
T Consensus 72 v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 72 VNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----QEKPIGIVTKIDLLSY 123 (124)
T ss_pred cCCCCCHHHHHhhcccCCceEEEecccccccccccc-----ccceEEEEehhHhhhh
Confidence 9999999999996543 35678888886 7999999999999875
No 51
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.3e-12 Score=116.81 Aligned_cols=109 Identities=30% Similarity=0.307 Sum_probs=95.0
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+|+..|+.+.+.... .+.++.++|.. ++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~~~------~~~~i 69 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVMRR------DFPTV 69 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHhcC------CCcEE
Confidence 5678899999999999998888899999998899999999999987664221 23457888876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~ 110 (111)
T cd04639 70 SPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTLENVGE 110 (111)
T ss_pred CCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999996 689999999999975
No 52
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=2.6e-12 Score=117.27 Aligned_cols=111 Identities=21% Similarity=0.345 Sum_probs=92.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcC-CcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++.++++++++.++.+.|.+++ .+.+||+|++++++|+|+.+|+.+..... ..+.++.++|++ ...+.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~~~~----~~~~~~ 71 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQ------WAQTTVIQVMTP----AAKLVT 71 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhh------ccccchhhhhcc----cccceE
Confidence 5678999999999999997665 78999999889999999999998765321 123457788864 113568
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+++++.++++.|.+++.+++||+|+ +++++|++|.+|+++
T Consensus 72 v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gvl~~~di~~ 113 (114)
T cd04801 72 VLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGLITEADLLR 113 (114)
T ss_pred ECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEEEeccceec
Confidence 999999999999999999999999996 689999999999875
No 53
>PRK03655 putative ion channel protein; Provisional
Probab=99.39 E-value=1.3e-11 Score=137.91 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hc-CCchhHHHHHHHHHHHHHHHHhcccccCCHHHHHHHH
Q 004181 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQK------DN-GIPKAVFPVMGGLAVGLIALMFPEILYWGFENVDILL 422 (770)
Q Consensus 350 l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~------~~-~~~~~~~~~l~gl~vg~i~~~~P~~~g~G~~~i~~l~ 422 (770)
+...+++|+++|+++.+|.++..+.++++..... .. ++.....+.++|+++|++..+.|..-|+ ...++..
T Consensus 13 ~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~~G~-~~~~~~~- 90 (414)
T PRK03655 13 SLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGHAGP-DPATEPL- 90 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCCCCC-hHHHHHH-
Confidence 4667999999999999999999888776543211 00 1111233678899999988777754444 2223333
Q ss_pred ccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHH
Q 004181 423 ESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAY 502 (770)
Q Consensus 423 ~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 502 (770)
.+.+ +.. .....|++++.+++++|+|.|+++|++++||++|..+++.+.. . .+....
T Consensus 91 ~~~~----~~~----~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r~~~~---~------------~~~~~l 147 (414)
T PRK03655 91 IGAP----VPP----SALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLP---R------------VNRMDW 147 (414)
T ss_pred hcCC----CCc----cHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc---C------------CChhHH
Confidence 3221 121 3466799999999999999999999999999999999987621 1 233456
Q ss_pred HHHHHHHHHHHHcCchHHHHHHHHHH-hCCcc------hHHHHHHHHHHHHHHhhh
Q 004181 503 GLVGMAATLAGVCQVPLTSVLLLFEL-TQDYR------IVLPLLGAVGLSSWFTSG 551 (770)
Q Consensus 503 alvGaaA~la~~~~aPls~~vi~~El-tg~~~------~~lPlm~a~~ia~~v~~~ 551 (770)
.++|+||.+++++|+|++++++.+|. .++++ .+.|+ ++++++..+++.
T Consensus 148 ~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~~v~~~ 202 (414)
T PRK03655 148 TILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGALTTGL 202 (414)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 78999999999999999999999995 56554 34444 455556665543
No 54
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=5.1e-12 Score=114.95 Aligned_cols=110 Identities=21% Similarity=0.331 Sum_probs=94.8
Q ss_pred eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEeC
Q 004181 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTAT 713 (770)
Q Consensus 634 ~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V~ 713 (770)
+..+.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+...+.. ...+.++.++|.+ ++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~----~~~~~~i~~~~~~------~~~~v~ 72 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE----ELKDAKVREVMNS------PVITID 72 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh----hhcCCcHHHhccC------CceEEC
Confidence 567899999999999999999999999998899999999999987543221 1234457888876 688999
Q ss_pred CCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 714 PNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 714 ~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 73 ~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 73 ANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTEDDILR 112 (113)
T ss_pred CCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHHHhhc
Confidence 9999999999999999999999997 789999999999975
No 55
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.39 E-value=4.2e-12 Score=115.72 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=94.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+..++++++++.++.+.|.+.+.+.++|+|++++++|+++.+|+.+.+.+.. ..+.++.++|.+ .+.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-----~~~~~v~~~~~~------~~~~v 71 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL-----SLDDPVSEVMNR------NPITA 71 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC-----CcCCCHHHhhcC------CCEEE
Confidence 3567899999999999999888899999999999999999999987653211 123457888876 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+.+||+|+ +|+++|+||++|++.
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 112 (113)
T cd04607 72 KVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEhHHhcc
Confidence 99999999999999999999999997 789999999999864
No 56
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=4.7e-12 Score=117.45 Aligned_cols=114 Identities=19% Similarity=0.258 Sum_probs=91.7
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccc-----cccccccccccCCCCc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRS-----KKLLVSEMCSADGETC 706 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~-----~~~~V~dim~~~~~~~ 706 (770)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+...+........ ....+.++|..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS----- 76 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC-----
Confidence 56788999999999999998889999999987 99999999999988664321110000 01122345555
Q ss_pred cCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHH
Q 004181 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757 (770)
Q Consensus 707 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl 757 (770)
++.++++++++.+|++.|.+++.+++||+|+ +++++|+||++|+-
T Consensus 77 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~~di~ 121 (123)
T cd04627 77 -DVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISVTDVR 121 (123)
T ss_pred -CceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeHHHhh
Confidence 6789999999999999999999999999997 78999999999974
No 57
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=3.3e-12 Score=113.56 Aligned_cols=94 Identities=26% Similarity=0.316 Sum_probs=85.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+++++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.. .+.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~---------------------------~~~~v 54 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS---------------------------EVVTA 54 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC---------------------------CcEEe
Confidence 577899999999999999989999999999999999999999997521 14689
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 55 ~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~~di~~ 95 (96)
T cd04614 55 TKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRDHDLLK 95 (96)
T ss_pred cCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999996 689999999999986
No 58
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=3.9e-12 Score=115.03 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=94.0
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
.++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.... .+.+++++|.. ++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~~~------~~~~ 65 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVMTK------NPIT 65 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHhcC------CCeE
Confidence 3577899999999999999998889999999999999999999997431 13457888876 6889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 66 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~di~~ 107 (108)
T cd04596 66 VNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISRQDVLK 107 (108)
T ss_pred ECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999975
No 59
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.38 E-value=7.1e-12 Score=113.00 Aligned_cols=107 Identities=33% Similarity=0.453 Sum_probs=94.0
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++..+++++++.++.+.|.+.+...+||+|++++++|+++.+|+.+... .+.+++++|.+ .+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~---------~~~~v~~~~~~------~~~~ 66 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYK---------EAKSLEDIMLE------DVFT 66 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhh---------cCCcHhHhhcC------CceE
Confidence 45678899999999999999988999999998899999999999986542 12346778876 6789
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++++.++++.|.+++.+++||+|+ +|+++|++|++|+++
T Consensus 67 v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~~~l~~ 108 (109)
T cd04583 67 VQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITRSSLVD 108 (109)
T ss_pred ECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEehHHhhc
Confidence 999999999999999999999999997 789999999999875
No 60
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.38 E-value=6.7e-12 Score=112.79 Aligned_cols=105 Identities=25% Similarity=0.223 Sum_probs=92.1
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++++++++++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+... ..+.++|.+ .+..
T Consensus 1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~~~------~~~~ 63 (106)
T cd04582 1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHAEP------FKVT 63 (106)
T ss_pred CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhccc------CCEE
Confidence 35678999999999999999888899999998899999999999986421 126677776 5678
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 64 VSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQRSIAD 105 (106)
T ss_pred ECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999975
No 61
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=6.3e-12 Score=114.17 Aligned_cols=110 Identities=28% Similarity=0.300 Sum_probs=95.3
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+.+.... ..+..+.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~~~------~~~~v 70 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI-----DLDTPVSEIMTR------DLVTV 70 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC-----CCccCHHHhccC------CCEEE
Confidence 4678899999999999999989999999999999999999999987654321 123457788876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++...+||+|+ +|+++|++|++|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~~dl~~ 111 (112)
T cd04624 71 DPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISIRDLVR 111 (112)
T ss_pred CCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEHHHhcc
Confidence 99999999999999999999999996 789999999999975
No 62
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=8e-12 Score=113.31 Aligned_cols=111 Identities=25% Similarity=0.341 Sum_probs=95.2
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++++.+||+|++++++|+++.+|+.+.+.... ....+..+.++|.+ ++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~---~~~~~~~~~~~~~~------~~~~v 72 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRG---ASALDTPVSEIMTR------NVITV 72 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcC---CCccccCHHHhcCC------CcEEE
Confidence 4677899999999999999999999999998899999999999988664221 11123467888876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+.+.+.+||+| +++++|+||++|+++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 112 (113)
T cd04623 73 TPDDTVDEAMALMTERRFRHLPVVD------GGKLVGIVSIGDVVK 112 (113)
T ss_pred CCCCcHHHHHHHHHHcCCCEeEEEe------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 589999999999975
No 63
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.5e-12 Score=117.56 Aligned_cols=115 Identities=23% Similarity=0.226 Sum_probs=91.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccc-c-------c-cccccccccCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRS-K-------K-LLVSEMCSADG 703 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~-~-------~-~~V~dim~~~~ 703 (770)
++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+............ . . ....+.|..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR-- 79 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC--
Confidence 4678999999999999999999999999999999999999999988653211100000 0 0 011233443
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++++++++.++++.|.+++.+++||+|+ +++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~~dil~ 125 (126)
T cd04642 80 ----PLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITLTDIIS 125 (126)
T ss_pred ----CCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEHHHHhc
Confidence 6789999999999999999999999999996 789999999999975
No 64
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.1e-12 Score=116.63 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=96.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh-----ccccccccccccccCCCCcc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-----SRSKKLLVSEMCSADGETCC 707 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~-----~~~~~~~V~dim~~~~~~~~ 707 (770)
++.++.+++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+......... ....+.++.++|..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC------
Confidence 4678899999999999999999999999998899999999999987654211100 01234567788876
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dl~~ 121 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITRSDFLR 121 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEHHHhhc
Confidence 7889999999999999999999999999996 689999999999975
No 65
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.36 E-value=4.9e-12 Score=141.64 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=107.2
Q ss_pred hcccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccccccccc
Q 004181 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (770)
Q Consensus 620 ~l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (770)
.+++++|+|+|++ ++.+++.+++++|+++.+.+++++.+||++++ ++++|+|+.+|+.....+ .+..++
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--------~~~~l~ 258 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--------KNFDWQ 258 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc--------CCCCHH
Confidence 3567899999997 89999999999999999999999999999864 799999999999865421 123467
Q ss_pred cccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 697 dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
++|++ +.++++++++.++++.|++++.+..+|+|+ .|.++|+||.+|+++.+-
T Consensus 259 ~~~~~-------~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-----~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 259 SLLRE-------PYFVPENKKLDDLLRDFQEKKNHLAIVVDE-----YGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred HHcCC-------CeEeCCCCcHHHHHHHHHhcCceEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 77764 789999999999999999999999999997 799999999999999974
No 66
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=4.6e-12 Score=117.42 Aligned_cols=115 Identities=26% Similarity=0.310 Sum_probs=95.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhh-------ccccccccccccccCCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKT-------SRSKKLLVSEMCSADGE 704 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~-------~~~~~~~V~dim~~~~~ 704 (770)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+.+.+.+..... ....+.++.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR--- 78 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC---
Confidence 56788999999999999999998999999987 99999999999987664221100 01123457777766
Q ss_pred CccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 705 TCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 705 ~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 79 ---~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~~di~~ 124 (125)
T cd04631 79 ---NVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTERDLLK 124 (125)
T ss_pred ---CceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEHHHhhc
Confidence 6889999999999999999999999999996 689999999999986
No 67
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=5.7e-12 Score=114.72 Aligned_cols=112 Identities=23% Similarity=0.267 Sum_probs=95.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.+.+..... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~--~~~~~~~v~~~~~~------~~~~v 73 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSY--HCDGVATVRDIMTT------EVLTV 73 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhh--ccCCCccHHHHhcc------CceEE
Confidence 56788999999999999988888899999999999999999999876643221 11234567888876 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvit~~di~~ 113 (114)
T cd04629 74 SPDDSIVDLAQLMLKAKPKRYPVVD------DGKLVGQISRRDVLR 113 (114)
T ss_pred CCCCcHHHHHHHHHHhCCCccCEEE------CCEEEEEEEHHHHhc
Confidence 9999999999999999999999999 579999999999975
No 68
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=8e-12 Score=113.36 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=93.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++++.|.+++++.+||+|++++++|+++.+|+.+...... ..+..+.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-----~~~~~v~~~~~~------~~~~v 70 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFES-----FLEKKVFNIVSQ------DVFYV 70 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcc-----cccCcHHHHhcC------CcEEE
Confidence 5678899999999999999999999999998999999999999987543211 123457788876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+| +|+++|+||+.|+++
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~di~~ 110 (111)
T cd04626 71 NEEDTIDEALDIMREKQIGRLPVVD------DNKLIGVVRTKDILD 110 (111)
T ss_pred cCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEhHHhcc
Confidence 9999999999999999999999998 579999999999874
No 69
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.36 E-value=6.3e-12 Score=114.19 Aligned_cols=112 Identities=27% Similarity=0.393 Sum_probs=95.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+++++++++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+...+.. ..++.++.++|++ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~----~~~~~~v~~~~~~------~~~~v 71 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS----LYDLVVASDIMTK------PPVVV 71 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc----ccccEEHHHhccC------CCcEE
Confidence 5678999999999999999989999999998899999999999987653211 1223568888887 78899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+.+.+.+||+|++ +++++|++|.+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~----~~~~~Gvvt~~di~~ 113 (114)
T cd04613 72 YPEDSLEDALKKFEDSDYEQLPVVDDD----PGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCCHHHHHHHHhhCCccEeeEEeCC----CCEEEEEEEhHHhhc
Confidence 999999999999999999999999831 379999999999975
No 70
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.36 E-value=6.5e-12 Score=114.21 Aligned_cols=111 Identities=27% Similarity=0.341 Sum_probs=95.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+++++++++++.++.+.+.+.+.+.+||+|++++++|+++.+++.+.+.... .....++.++|.+ ++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----~~~~~~v~~~~~~------~~~~v 72 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----DILTLPVADVMTR------NPKTI 72 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----ccccCCHHHhhcc------CCeEE
Confidence 4667899999999999998888899999999999999999999998764221 1223468888887 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~~di~~ 113 (114)
T cd04604 73 DPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHIHDLLR 113 (114)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEHHHhhc
Confidence 99999999999999999999999997 789999999999975
No 71
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.36 E-value=8.1e-12 Score=113.22 Aligned_cols=108 Identities=22% Similarity=0.218 Sum_probs=92.3
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+...... ....+.++|. ++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~------~~~~~~~~~~-------~~~~ 68 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE------EDLDLRDLLR-------PPLF 68 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC------CcCCHHHHhc-------CCee
Confidence 56789999999999999998888999999988 99999999999998764211 1134556553 4678
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 69 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~di~~ 110 (111)
T cd04590 69 VPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTLEDILE 110 (111)
T ss_pred cCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEHHHhhc
Confidence 999999999999999999999999996 799999999999975
No 72
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=7.3e-12 Score=118.70 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=95.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh-------------------cccccc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-------------------SRSKKL 693 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~-------------------~~~~~~ 693 (770)
+++++++++++.++++.|.+.+.+.+||+|++++++|+++..|+.+......... ....+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678899999999999999999999999999999999999999988664211100 001244
Q ss_pred ccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 694 ~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++|.+ ++..+.+++++.++++.|.+++.+++||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~------~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDIMTE------EIITVSPNDDVVDAAKLMLEANISGLPVVD------NDNIVGVITKTDICR 134 (135)
T ss_pred cHHHhcCC------CCeEECCCCCHHHHHHHHHHcCCCEEEEEe------CCEEEEEEEHHHHhh
Confidence 67888876 678999999999999999999999999998 589999999999976
No 73
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=4.7e-12 Score=116.86 Aligned_cols=115 Identities=27% Similarity=0.347 Sum_probs=95.1
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHH-----hhhhccccccccccccccCCCCcc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA-----QAKTSRSKKLLVSEMCSADGETCC 707 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~-----~~~~~~~~~~~V~dim~~~~~~~~ 707 (770)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++.+|+.+..... ........+..+.++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST------ 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC------
Confidence 567899999999999999988999999999999999999999998642110 000000134457778876
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++..+++++++.++++.|.+++.+.+||+|+ +|+++|++|++|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEhHHhhc
Confidence 6889999999999999999999999999997 789999999999986
No 74
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=6.7e-12 Score=117.07 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=91.0
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHH--HhhhhccccccccccccccCCCCccCCe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY--AQAKTSRSKKLLVSEMCSADGETCCVPC 710 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~--~~~~~~~~~~~~V~dim~~~~~~~~~~~ 710 (770)
++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.... .........+.+++++|++ ++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~ 75 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP------KED 75 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc------hhh
Confidence 35788999999999999998888999999988999999999999863210 0000011234568889976 332
Q ss_pred E--e----CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCC-CeEEEEEeHHHHHH
Q 004181 711 T--A----TPNMNLLSALILMDRYGVNQVPVVMEHIPGQR-GQLVGLLDRESIIL 758 (770)
Q Consensus 711 ~--V----~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~-g~lvGIIT~~DIl~ 758 (770)
. + .+++++.++++.|.+++.+.+||+|+ + |+++|+||++|+++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~~~G~it~~di~~ 125 (126)
T cd04640 76 LKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQIRGIISTSDIAR 125 (126)
T ss_pred hccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCEEEEEEeHHHHhh
Confidence 2 2 36899999999999999999999996 5 79999999999976
No 75
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=7e-12 Score=114.51 Aligned_cols=114 Identities=22% Similarity=0.221 Sum_probs=93.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhc-cccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS-RSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~-~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.......... ...+.++.++|.+ ++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~ 75 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT------DVPV 75 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC------CCce
Confidence 56789999999999999999999999999988999999999999876642111000 0014567888887 6889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+.+++++.++++.|.+++ .+||+|+ +|+++|+||++|++++
T Consensus 76 v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~~dil~~ 116 (116)
T cd04643 76 IIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITRREILKA 116 (116)
T ss_pred ecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEHHHhhcC
Confidence 999999999999998865 5999997 7899999999999863
No 76
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.1e-11 Score=115.57 Aligned_cols=117 Identities=25% Similarity=0.278 Sum_probs=95.2
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhh---------hccccccccccccccCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK---------TSRSKKLLVSEMCSADG 703 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~---------~~~~~~~~V~dim~~~~ 703 (770)
++.++++++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+.+...... .....+..+.++|+.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS-- 79 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC--
Confidence 567889999999999999999999999999999999999999998765321100 001223457788876
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++.+++++.++++.|.+++.+.+||++++ ++++++|+||++|+++
T Consensus 80 ----~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 ----PVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVLR 127 (128)
T ss_pred ----CCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhhc
Confidence 68899999999999999999999999998521 1589999999999975
No 77
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=8.8e-12 Score=113.88 Aligned_cols=110 Identities=27% Similarity=0.445 Sum_probs=90.8
Q ss_pred ceeEEeCCCCHHHHHHHHHhcC-CcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++.++++++++.++++.|.+++ ...++|+| +++++|+++.+|+.+..... ....+..+.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~----~~~~~~~i~~~~~~------~~~~ 70 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIG----KDLSDLPIGEVMTQ------PVVT 70 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcC----CCccccCHHHhcCC------CcEE
Confidence 4567899999999999998877 66777777 68999999999998765321 11223557788876 6778
Q ss_pred eCCC--CCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPN--MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d--~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.++ +++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 71 v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gvit~~dl~~ 114 (115)
T cd04620 71 LQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGLVTAESIRQ 114 (115)
T ss_pred EecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEEEEhHHhhc
Confidence 8887 78999999999999999999997 799999999999986
No 78
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.34 E-value=1.4e-11 Score=111.51 Aligned_cols=108 Identities=25% Similarity=0.321 Sum_probs=93.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...... ...++.++|.. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~~~------~~~~v 68 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL------ELAKVKDVMTK------DVITI 68 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc------cccCHHHHhcC------CceEE
Confidence 5678899999999999999999999999998 99999999999987653211 12457777766 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 109 (110)
T cd04588 69 DEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITRTDILR 109 (110)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEhHHhhc
Confidence 99999999999999999999999996 689999999999975
No 79
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=5.9e-12 Score=118.84 Aligned_cols=115 Identities=30% Similarity=0.388 Sum_probs=95.6
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhh------------------hhcccccc
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA------------------KTSRSKKL 693 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~------------------~~~~~~~~ 693 (770)
+++.++++++++.++++.|.+++++.+||+|++++++|+++.+|+.+....... ........
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999988999999999999875431100 00011234
Q ss_pred ccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 694 ~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+.++|.+ ++.++.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 82 ~v~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd------~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR------PVVTVGEDTPLAEVAELMEEHRIKRVPVVR------GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC------CceEeCCCCcHHHHHHHHHHcCCCccCEec------CCEEEEEEEhHhhhc
Confidence 57788876 688999999999999999999999999998 589999999999976
No 80
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=1.7e-11 Score=111.00 Aligned_cols=108 Identities=24% Similarity=0.328 Sum_probs=94.2
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+..... ..+.++.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~~~------~~~~ 68 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYMST------DVVT 68 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHhcC------CCEE
Confidence 46778999999999999999888899999998 9999999999998765311 134567888877 7889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 69 v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvvt~~di~~ 109 (110)
T cd04595 69 VPPDTPLSEVQELMVEHDIGRVPVVE------DGRLVGIVTRTDLLR 109 (110)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeEEEe------CCEEEEEEEhHHhhc
Confidence 99999999999999999999999998 579999999999975
No 81
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.33 E-value=1.9e-11 Score=110.85 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=93.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+++.+++++++.++++.|.+++.+.++|+|+ ++++|+++.+|+.+...... ...+.++.++|.+ +...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~----~~~~~~i~~~~~~------~~~~v 70 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG----LPSSTPVGEIATF------PLITV 70 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC----CCCCCCHHHHhCC------CcEEE
Confidence 4568899999999999999888889999997 89999999999987653211 1234567888876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+.+||+| +++++|+||++|+++
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~dl~~ 110 (111)
T cd04589 71 DPDDFLFNALLLMTRHRIHRVVVRE------GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCCcHHHHHHHHHHhCccEEEEee------CCEEEEEEEhHHhhc
Confidence 9999999999999999999999998 589999999999975
No 82
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.32 E-value=5.2e-12 Score=139.15 Aligned_cols=123 Identities=26% Similarity=0.286 Sum_probs=112.7
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccC
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSAD 702 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~ 702 (770)
..++.++|+.+++++++.+++.+|.+.|.+.+.+.+.++|+++...||||++|+...+... ....+.+|+++|+.
T Consensus 148 ~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~----g~~~~~~V~evmT~- 222 (610)
T COG2905 148 LTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIAD----GRSKTQKVSEVMTS- 222 (610)
T ss_pred HHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhc----CCCcccchhhhhcc-
Confidence 4579999999999999999999999999999999999999999999999999999887532 22456789999998
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 703 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
++.+++.++.+.||+-+|.+++++++||++ +|+++|+||.+||++..+
T Consensus 223 -----p~~svd~~~~~feAml~m~r~~I~hl~V~e------~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 223 -----PVISVDRGDFLFEAMLMMLRNRIKHLPVTE------DGQPLGILTLTDILRLFS 270 (610)
T ss_pred -----CceeecCcchHHHHHHHHHHhCCceeeeec------CCeeeEEeeHHHHHHhhC
Confidence 899999999999999999999999999998 699999999999999876
No 83
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.32 E-value=1.4e-11 Score=112.03 Aligned_cols=111 Identities=33% Similarity=0.421 Sum_probs=93.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+|+.+|+.+...... ....+.++.++|.+ ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~i~~~------~~~~v 71 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQG---LDPESTLVERVMTP------NPVCA 71 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcC---CCcCcCCHHHhcCC------CCeEE
Confidence 5678899999999999999888889999997 99999999999975443211 11112567888876 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+++||+|+ +++++|+||++|++.
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 72 TSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDVTKLTH 112 (113)
T ss_pred cCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEHHHhcc
Confidence 99999999999999999999999996 689999999999975
No 84
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.32 E-value=1.1e-11 Score=140.33 Aligned_cols=122 Identities=19% Similarity=0.238 Sum_probs=107.8
Q ss_pred hhhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 618 ~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
.+.++.+++.++|.++++++.+++++.++++.|.+++.+.+||+| +++++|+||.+|+... ..+.++++
T Consensus 82 ae~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~----------~~~~~V~d 150 (475)
T TIGR01303 82 KQTVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV----------DRFTQVRD 150 (475)
T ss_pred HHHHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC----------CCCCCHHH
Confidence 445678899999999999999999999999999999998999988 4799999999998532 11245899
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
+|++ ++.++++++++.+|+++|.+++.+++||+|+ +|+++|+||++||++...
T Consensus 151 IMt~------~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-----~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 IMST------DLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-----DGTLAGILTRTGALRATI 203 (475)
T ss_pred HccC------CceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 9988 7899999999999999999999999999997 789999999999998654
No 85
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.3e-11 Score=110.38 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=91.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
+++++++++++.++++.|.+++...++|.| +++++|+++.+|+.+...... ....+.+++++|+. ++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~~~~~------~~~~v 71 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG---AGVLDTTVRAIMNP------EPIVA 71 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC---CchhcCCHHHHhCC------CCeEE
Confidence 467889999999999999887777777665 599999999999987764210 11223468888877 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.+++++|.+++.+.+||+| +|+++|+||++|+++
T Consensus 72 ~~~~~l~~a~~~m~~~~~~~l~Vv~------~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 72 SPDDSIDEVRRLMVERHLRYLPVLD------GGTLLGVISFHDVAK 111 (112)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEEE------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 589999999999976
No 86
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=7.2e-12 Score=142.65 Aligned_cols=119 Identities=19% Similarity=0.140 Sum_probs=101.7
Q ss_pred ccccccc---cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC---CCcEEEEEehHHHHHHHHHHhhhhccccccccccc
Q 004181 625 FVSEVMR---TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (770)
Q Consensus 625 ~V~diM~---~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~di 698 (770)
+|+++|. .+.+++++++++.|+++.|.+++++.+||+|+ +++++|+||.+|++... ...+.+++++
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~dI 166 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKDF 166 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHHH
Confidence 5677775 35679999999999999999999999999997 68999999999996421 1235678999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
|++ .+++.++++++++.+|+++|.+++++.+||+|+ +++++|+||++|+++..
T Consensus 167 Mt~----~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 167 MTP----FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred hCC----CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 985 125678999999999999999999999999997 78999999999999863
No 87
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.32 E-value=2.1e-11 Score=110.49 Aligned_cols=110 Identities=30% Similarity=0.422 Sum_probs=93.6
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+.... ...+..+.++|.. ++.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~----~~~~~~i~~~~~~------~~~~ 69 (111)
T cd04800 1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEG----LDPDTPVSEVMTA------PPIT 69 (111)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccC----CCccCCHHHHhCC------CCeE
Confidence 35678899999999999999888899999997 99999999999987543211 1123457788876 7889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+++++++.++++.|.+++.+++||+| +|+++|++|++|+++
T Consensus 70 v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Giit~~di~~ 110 (111)
T cd04800 70 IPPDATVFEALLLMLERGIHHLPVVD------DGRLVGVISATDLLR 110 (111)
T ss_pred ECCCCcHHHHHHHHHHcCCCeeeEeE------CCEEEEEEEHHHhhc
Confidence 99999999999999999999999998 589999999999975
No 88
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.31 E-value=1.7e-11 Score=112.56 Aligned_cols=114 Identities=28% Similarity=0.368 Sum_probs=95.0
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhc------cccccccccccccCCCCc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS------RSKKLLVSEMCSADGETC 706 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~------~~~~~~V~dim~~~~~~~ 706 (770)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.......... ...+..+.++|.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR----- 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC-----
Confidence 4678899999999999999999999999997 999999999999876542110000 0123557788876
Q ss_pred cCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 707 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~~di~~ 121 (122)
T cd04585 76 -DPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITESDLFR 121 (122)
T ss_pred -CCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEHHHhhh
Confidence 6889999999999999999999999999996 689999999999986
No 89
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=1.8e-11 Score=111.20 Aligned_cols=111 Identities=24% Similarity=0.263 Sum_probs=93.0
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+....... ........+.++|.. .+.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~---~~~~~~~~~~~~~~~------~~~~v 71 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAE---GRDPDTTTVGDVMTR------GVVTV 71 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhc---cCCcccCCHHHhccC------CccEE
Confidence 5678999999999999999999999999997 9999999999987332211 111222347888876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 112 (113)
T cd04622 72 TEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999986 689999999999975
No 90
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.31 E-value=2.1e-11 Score=110.30 Aligned_cols=109 Identities=27% Similarity=0.337 Sum_probs=94.2
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+...... ..+.++.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~~~------~~~~~ 69 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP-----DLQTPVGEVMSS------PLLTV 69 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC-----CCCcCHHHhcCC------CceEE
Confidence 4678899999999999999888889999986 99999999999987664211 134567888876 68899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+.+.+.+||+|+ +|+++|+|+++|+++
T Consensus 70 ~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~di~~ 110 (111)
T cd04611 70 PADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEhHHhhc
Confidence 99999999999999999999999996 789999999999975
No 91
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.31 E-value=2e-11 Score=110.46 Aligned_cols=109 Identities=31% Similarity=0.505 Sum_probs=93.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...... .....+.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~-----~~~~~~~~~~~~------~~~~v 69 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGR-----EATVLVGDVMTR------DPVTA 69 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCc-----ccccCHHHhccC------CCeEE
Confidence 5678999999999999999888899999998 99999999999987553211 112356777776 78899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+|+ +|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~~di~~ 110 (111)
T cd04612 70 SPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSRSDLLR 110 (111)
T ss_pred CCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEHHHhhh
Confidence 99999999999999999999999996 689999999999975
No 92
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.31 E-value=1.6e-11 Score=140.41 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=106.1
Q ss_pred hhhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 618 EELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 618 ~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
.+.++.++++++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.+.... ...+.++.+
T Consensus 329 ~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~ 404 (454)
T TIGR01137 329 FDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK----ANPDDAVSK 404 (454)
T ss_pred HHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC----CCcCCCHHH
Confidence 4458899999999999999999999999999999989999999998899999999999988664211 122346888
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
+|++ ++.++++++++.+++++|.+++ .|||++ +++++|+||++|+++++
T Consensus 405 im~~------~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 VMSK------KFIQIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred hcCC------CCeEECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 9987 6789999999999999998864 355555 68999999999999875
No 93
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=2.1e-11 Score=114.63 Aligned_cols=114 Identities=23% Similarity=0.328 Sum_probs=94.6
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhc----------------cccccccc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTS----------------RSKKLLVS 696 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~----------------~~~~~~V~ 696 (770)
++.++++++++.++.+.|.+.+++.+||+|++++++|+++..|+.+.......... .....++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 56788999999999999998889999999999999999999999877642211000 01112577
Q ss_pred cccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 697 dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++|.+ ++..+.+++++.+++++|.+.+.+.+||+| +|+++|++|++|+++
T Consensus 82 ~~~~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~iGvit~~dl~~ 131 (132)
T cd04636 82 EIMTK------KVITVDEDTTIEDVARIMSKKNIKRLPVVD------DGKLVGIISRGDIIR 131 (132)
T ss_pred HhccC------CceEECCCCcHHHHHHHHHHCCCCeeEEEE------CCEEEEEEEHHHhhc
Confidence 78876 788999999999999999999999999999 589999999999985
No 94
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.30 E-value=2.1e-11 Score=111.50 Aligned_cols=106 Identities=17% Similarity=0.247 Sum_probs=90.3
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC---CCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP 709 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~ 709 (770)
++.++++++++.++++.|.+++.+.+||+|+ +++++|+++.+|+..... .+.+++++|.+ .+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~---------~~~~v~~~~~~------~~ 67 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD---------SETPLSEVMTP------RE 67 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc---------cCCCHHHhcCC------Cc
Confidence 5678899999999999999888889999997 799999999999864311 12347788876 56
Q ss_pred eEeCC--CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 710 CTATP--NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 710 ~~V~~--d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.++.. ++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 68 ~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvit~~di~~ 113 (114)
T cd04602 68 VLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALVTRSDLKK 113 (114)
T ss_pred eEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEEEHHHhhc
Confidence 67755 999999999999999999999997 789999999999875
No 95
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.30 E-value=9.3e-12 Score=132.09 Aligned_cols=114 Identities=27% Similarity=0.336 Sum_probs=100.7
Q ss_pred ccccccccccc-eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccccc
Q 004181 623 RVFVSEVMRTR-YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (770)
Q Consensus 623 ~i~V~diM~~~-~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~ 701 (770)
.++|+|+|.++ ++++++++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+.... ....+.+++++|.+
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~-----~~~~~~~v~~im~~ 228 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLG-----GGSLKSEVRDFMTL 228 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhc-----CCcccCcHHHhCCC
Confidence 47899999998 9999999999999999999889999999999999999999999876431 11234568899987
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEe
Q 004181 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 752 (770)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT 752 (770)
++.++.+++++.+|++.|.+++.+.+||+|+ +|+++|+|+
T Consensus 229 ------~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~g~l~GvI~ 268 (268)
T TIGR00393 229 ------GPKTFKLDALLLEALEFLERRKITSLVVVDD-----HNKVLGVLH 268 (268)
T ss_pred ------CCeEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCeEEEEEC
Confidence 7889999999999999999999999999997 789999985
No 96
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.28 E-value=2.5e-11 Score=134.03 Aligned_cols=147 Identities=28% Similarity=0.367 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHh-cccccCCHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHH
Q 004181 395 MGGLAVGLIALMF-PEILYWGFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMA 473 (770)
Q Consensus 395 l~gl~vg~i~~~~-P~~~g~G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 473 (770)
+++++++.+...+ |+..|+|-+.+.+.+++.. ...-....+.|++.+.+|+++|.|.|.++|+..+|+++|..
T Consensus 1 ~~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~------~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~ 74 (355)
T PF00654_consen 1 IGGLLSGLLWKKFAPEAAGSGIPEVKAALRGKS------GRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSW 74 (355)
T ss_dssp -HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS---------HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHHCCccCCCCHHHHHHHHhCCC------CCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHH
Confidence 4678888887766 9999999999998887652 12345568899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhC---CcchHHHHHHHHHHHHHHhh
Q 004181 474 YGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQ---DYRIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 474 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg---~~~~~lPlm~a~~ia~~v~~ 550 (770)
+++.++.- +......+..+|+||.+++++++|++++++.+|... +++.+.|.++++++++.+.+
T Consensus 75 ~~~~~~~~-------------~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~ 141 (355)
T PF00654_consen 75 LGRRFRLS-------------RNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSR 141 (355)
T ss_dssp HHHHTT---------------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred HHHhhccc-------------chHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHH
Confidence 99986631 112245699999999999999999999999999753 56799999999999998887
Q ss_pred hccccccchh
Q 004181 551 GQMRRRDVKE 560 (770)
Q Consensus 551 ~~~~~~~~~~ 560 (770)
....+++.|.
T Consensus 142 ~~~~~~~~f~ 151 (355)
T PF00654_consen 142 LLFGNHPIFG 151 (355)
T ss_dssp HHHTSS-SS-
T ss_pred HHcCcCcccc
Confidence 7655555443
No 97
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.8e-11 Score=110.84 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=94.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhh------hccccccccccccccCCCCc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK------TSRSKKLLVSEMCSADGETC 706 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~------~~~~~~~~V~dim~~~~~~~ 706 (770)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+...... +....+.++.++|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR----- 75 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC-----
Confidence 5678999999999999999989999999996 9999999999998765421100 000112357788876
Q ss_pred cCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 707 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++..+.+++++.++++.|.+++...+||+|+ +++++|++|++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~~dll~ 121 (122)
T cd04637 76 -DPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITWKDLLK 121 (122)
T ss_pred -CCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEHHHhhh
Confidence 7889999999999999999999999999986 789999999999986
No 98
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.28 E-value=2.3e-11 Score=109.81 Aligned_cols=107 Identities=29% Similarity=0.314 Sum_probs=91.7
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++.++++++++.++.+.|.+++.+.+||+|++++++|+++.+|+.... ..+..+.++|.. .+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~---------~~~~~v~~~~~~------~~~~ 66 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFET---------DLDKPVSEVMTP------ENLL 66 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeecc---------cCCCCHHHhccc------CceE
Confidence 4567889999999999999988999999999889999999999986431 123457788876 5666
Q ss_pred eCC-CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATP-NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~-d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+ ++++.++++.|.+++.+.+||+|+ +++++|+||++|+++
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~~dil~ 109 (110)
T cd04601 67 TTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLITVKDIEK 109 (110)
T ss_pred EecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEEhhhhhc
Confidence 677 999999999999999999999997 789999999999975
No 99
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=2.1e-11 Score=110.43 Aligned_cols=102 Identities=23% Similarity=0.317 Sum_probs=88.1
Q ss_pred EeCCCCHHHHHHHHHhcC-----CcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 637 VLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 637 v~~~~tl~eal~~m~~~~-----~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+.+++++.++++.|.+++ ...+||+|++++++|+++.+|+.+. ..+..+.++|.+ ++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----------~~~~~v~~~~~~------~~~~ 65 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----------DPDTPVSDIMDT------DVIS 65 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----------CCcchHHHHhCC------CCeE
Confidence 578899999999998776 3689999988999999999998752 123457788876 6889
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+.+++++.++++.|.+++.+.+||+|+ +++++|+||++|++++
T Consensus 66 i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~~dll~~ 108 (109)
T cd04606 66 VSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIITVDDVIDV 108 (109)
T ss_pred EcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEEhHHhhhh
Confidence 999999999999999999999999997 7899999999999875
No 100
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=5.9e-11 Score=107.73 Aligned_cols=110 Identities=27% Similarity=0.399 Sum_probs=92.7
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++++.|.+++.+.+||+|++ +++|+++.+|+.+.+.... ....+..+.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~G~v~~~dl~~~~~~~~---~~~~~~~~~~~~~~------~~~~v 71 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRN---LKPREVPVGEVMST------PLITI 71 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECC-EEEEEEEHHHHHHHHhhcc---CCcccCCHHHhcCC------CcEEE
Confidence 46778999999999999999889999999964 9999999999998654221 01234457788876 67899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+|+ ++++|+|+++|+++
T Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~di~~ 111 (112)
T cd04802 72 DPNASLNEAAKLMAKHGIKRLPVVDD------DELVGIVTTTDIVM 111 (112)
T ss_pred CCCCCHHHHHHHHHHcCCCeeEEeeC------CEEEEEEEhhhhhc
Confidence 99999999999999999999999995 49999999999874
No 101
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.28 E-value=2.9e-11 Score=137.98 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=102.8
Q ss_pred ccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC---CCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCC
Q 004181 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (770)
Q Consensus 627 ~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~ 703 (770)
+..|.++++++++++++.|+++.|.+++++.+||+|+ +++++|+||.+|+.... ..+.+++++|++
T Consensus 103 ~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~-- 171 (505)
T PLN02274 103 RVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS-- 171 (505)
T ss_pred cccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc--
Confidence 4458899999999999999999999999999999997 48999999999996432 135668999987
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
..+..++++++++.+++++|.+++.+.+||+|+ +++++|+||++|+++....
T Consensus 172 --~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 172 --DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred --CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhC
Confidence 112679999999999999999999999999997 7899999999999998653
No 102
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.27 E-value=4.4e-11 Score=110.08 Aligned_cols=114 Identities=28% Similarity=0.338 Sum_probs=94.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh-----ccccccccccccccCCCCcc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-----SRSKKLLVSEMCSADGETCC 707 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~-----~~~~~~~V~dim~~~~~~~~ 707 (770)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+......... ....+..+.++|.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK------ 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC------
Confidence 4678899999999999999888899999999999999999999987543211000 01234567888877
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++.+++++.++++.|.+++.+.+||+| +++++|++|.+|+++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~------~~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVE------DGRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEee------CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 589999999999976
No 103
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.7e-11 Score=110.69 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=94.3
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhh------hccccccccccccccCCCCc
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK------TSRSKKLLVSEMCSADGETC 706 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~------~~~~~~~~V~dim~~~~~~~ 706 (770)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+........ .....+..+.++|..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR----- 75 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC-----
Confidence 5678899999999999999888999999996 9999999999998765421110 011234567788876
Q ss_pred cCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 707 CVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 707 ~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++.++.+++++.+++++|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 76 -~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 76 -PVITIEPDTSVSDVASLMLENNIGGLPVVD------DGKLVGIVTRTDILR 120 (121)
T ss_pred -CceEECCCCcHHHHHHHHHHcCCCcccEEE------CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999999 579999999999975
No 104
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.27 E-value=3.1e-11 Score=136.90 Aligned_cols=122 Identities=26% Similarity=0.316 Sum_probs=106.7
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC---CcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
-+-.+.++.|.+++.++++++++.|+++.|.+++++.+||+|++ ++++|+|+.+|+.... ..+.++++
T Consensus 77 ~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~---------~~~~~V~d 147 (450)
T TIGR01302 77 KRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK---------DKGKPVSE 147 (450)
T ss_pred hhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh---------cCCCCHHH
Confidence 33356788999999999999999999999999999999999987 7999999999997431 12456889
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
+|++ +++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 148 vm~~-----~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-----~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 148 VMTR-----EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-----NGELVGLITMKDIVKRRK 201 (450)
T ss_pred hhCC-----CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEhHHhhhccc
Confidence 9982 16889999999999999999999999999997 899999999999998753
No 105
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=5.4e-11 Score=106.54 Aligned_cols=103 Identities=25% Similarity=0.366 Sum_probs=90.2
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++++.|.+++.+.+||+| +++++|+++.+|+.+.. .+..+.++|.+ ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~----------~~~~~~~~~~~------~~~~v 64 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAH----------PNRLVADAMTR------EVVTI 64 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhccc----------ccCCHHHHccC------CCEEE
Confidence 467789999999999999988888999998 69999999999997632 12347788876 78899
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++++.|.+++.+.+||+| +|+++|+||++|++.
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~Vv~------~~~~~G~it~~~l~~ 104 (105)
T cd04599 65 SPEASLLEAKRLMEEKKIERLPVLR------ERKLVGIITKGTIAL 104 (105)
T ss_pred CCCCCHHHHHHHHHHcCCCEeeEEE------CCEEEEEEEHHHhcc
Confidence 9999999999999999999999999 589999999999873
No 106
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.26 E-value=5.6e-11 Score=107.39 Aligned_cols=99 Identities=20% Similarity=0.297 Sum_probs=88.2
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC---CCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP 709 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~ 709 (770)
....+++++++.++.+.+.+.+.+.+||+|+ +++++|+|+.+|+.+...+ +|.+ ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m~~------~~ 61 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YIDP------SP 61 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hccC------CC
Confidence 4567899999999999999988889999998 6999999999999876431 5665 67
Q ss_pred eEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 710 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 710 ~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.++++++++.++++.|.+++.+.+||++ +|+++|+||++|+++
T Consensus 62 ~~v~~~~~l~~~~~~~~~~~~~~~pVv~------~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 62 FTVSPRTSLEKVHQLFRKLGLRHLLVVD------EGRLVGIITRKDLLK 104 (105)
T ss_pred ceECCCCcHHHHHHHHHHcCCCEEEEEE------CCeEEEEEEhhhhhc
Confidence 8999999999999999999999999996 689999999999976
No 107
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=4.6e-11 Score=107.40 Aligned_cols=105 Identities=25% Similarity=0.379 Sum_probs=91.6
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++++++.++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+... ..+..+.++|.+ .+.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----------~~~~~~~~~~~~------~~~~ 64 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----------DPDETVEEIMSK------DLVV 64 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----------CccccHHHhCCC------CCeE
Confidence 46778999999999999998888888999986 999999999999752 112347788876 6789
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+++++.++++.|.+++.+.+||+|+ +|+++|+|+.+|+++
T Consensus 65 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~~di~~ 106 (107)
T cd04610 65 AVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITNTDVIR 106 (107)
T ss_pred ECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEHHHhhc
Confidence 999999999999999999999999997 789999999999975
No 108
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.26 E-value=5.5e-11 Score=106.87 Aligned_cols=100 Identities=22% Similarity=0.181 Sum_probs=87.7
Q ss_pred eEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEeCC
Q 004181 635 VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATP 714 (770)
Q Consensus 635 ~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V~~ 714 (770)
.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+.. ...+.++|.+ .+.++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~~~~------~~~~v~~ 65 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDYIVR------GIPYVRL 65 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhhhhc------CCcEEcC
Confidence 46789999999999999999999999997 9999999999997531 1135667766 6789999
Q ss_pred CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 715 NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 715 d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 66 ~~~l~~a~~~~~~~~~~~~~Vv~------~~~~iGvit~~dl~~ 103 (104)
T cd04594 66 TSTAEEAWEVMMKNKTRWCPVVD------DGKFKGIVTLDSILD 103 (104)
T ss_pred CCCHHHHHHHHHHcCcceEEEEE------CCEEEEEEEHHHhhc
Confidence 99999999999999999999998 589999999999875
No 109
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.5e-11 Score=135.33 Aligned_cols=125 Identities=22% Similarity=0.299 Sum_probs=113.4
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcC-----CcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccc
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEK-----QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~-----~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~di 698 (770)
-+++.+|++++++++++.|+.++++.+++.. ...++|+|++++++|+++.+++... ..+..++++
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a----------~~~~~i~~i 201 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTA----------EPDELLKDL 201 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcC----------CcHhHHHHH
Confidence 4799999999999999999999999998543 5689999999999999999999743 235668999
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHHhhhhc
Q 004181 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALATRKSL 769 (770)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~~~~~l 769 (770)
|.+ .+.++.++++.+++.+.|++++.-.+||||+ +++++|+||.+|+++.++++.+++++
T Consensus 202 m~~------~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-----~~~LiG~itiDDiidvi~eEa~eDi~ 261 (451)
T COG2239 202 MED------DVVSVLADDDQEEVARLFEKYDLLAVPVVDE-----DNRLIGIITIDDIIDVIEEEATEDIL 261 (451)
T ss_pred hcc------cceeecccCCHHHHHHHHHHhCCeecceECC-----CCceeeeeeHHHHHHHHHHHHHHHHH
Confidence 998 6899999999999999999999999999998 89999999999999999999988865
No 110
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.25 E-value=6e-11 Score=106.99 Aligned_cols=108 Identities=24% Similarity=0.267 Sum_probs=89.8
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+....... ..+..+.++|.+ ++..+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~~~------~~~~v 70 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVMGE------PLPTV 70 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHhcC------CCcee
Confidence 4578899999999999999999999999997 999999999999987642211 113457778876 67889
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
++++++.++.++|.+ .. .+||+|+ +++++|+||++|+++
T Consensus 71 ~~~~~l~~~~~~~~~-~~-~~~vv~~-----~~~~~Gvvt~~di~~ 109 (110)
T cd04609 71 DPDAPIEELSELLDR-GN-VAVVVDE-----GGKFVGIITRADLLK 109 (110)
T ss_pred CCCCcHHHHHHHHHh-CC-ceeEEec-----CCeEEEEEeHHHhhc
Confidence 999999999999988 33 4789986 799999999999976
No 111
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.24 E-value=9.7e-11 Score=106.95 Aligned_cols=113 Identities=30% Similarity=0.394 Sum_probs=97.3
Q ss_pred cccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCcc
Q 004181 628 EVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCC 707 (770)
Q Consensus 628 diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~ 707 (770)
+.|.++++++.+++++.++...|.+++...+||+++ ++++|++|.+|+.+....... ....+.++|+.
T Consensus 3 ~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~-----~~~~v~~v~~~------ 70 (117)
T COG0517 3 DIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGK-----RLLPVKEVMTK------ 70 (117)
T ss_pred ccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCC-----ccccHHHhccC------
Confidence 445588999999999999999999999999999984 489999999999998753321 11157888886
Q ss_pred CCeEeCCCCCHHHHHHHHHh-cCCCEeEEEeccCCCCCC-eEEEEEeHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDR-YGVNQVPVVMEHIPGQRG-QLVGLLDRESII 757 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~-~~~~~lpVVd~~~~~~~g-~lvGIIT~~DIl 757 (770)
++.++.+++++.++.+.|.+ ++.+.+||+|+ ++ +++|++|++|++
T Consensus 71 ~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~~~lvGivt~~di~ 117 (117)
T COG0517 71 PVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DGGKLVGIITLSDIL 117 (117)
T ss_pred CcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CCCeEEEEEEHHHcC
Confidence 68899999999999999999 79999999997 65 999999999973
No 112
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.23 E-value=5.3e-11 Score=136.38 Aligned_cols=118 Identities=30% Similarity=0.282 Sum_probs=105.5
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccc-cC
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS-AD 702 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~-~~ 702 (770)
..++++|.+++.++++++++.|+++.|.+++++.+||+|++++++|+|+.+|+.... ..+.+++++|+ +
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~---------~~~~~V~dim~~~- 156 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET---------DLSQPVSEVMTKE- 156 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc---------cCCCcHHHHcCCC-
Confidence 467899999999999999999999999999999999999999999999999996431 12346888897 4
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 703 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++...
T Consensus 157 -----~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-----~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 157 -----RLVTVPEGTTLEEALELLHEHRIEKLPVVDD-----NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -----CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEhHHhhhhhh
Confidence 6889999999999999999999999999997 899999999999998753
No 113
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.22 E-value=1.7e-10 Score=103.44 Aligned_cols=111 Identities=31% Similarity=0.395 Sum_probs=93.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++++++++.++.+.|.+.+.+.+||+|++++++|+++.+|+.+....... .....+.++|.. ++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~~~~~~~~------~~~~~ 71 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGL----DPLVTVGDVMTR------DVVTV 71 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccC----CccccHHHHhcC------Cceec
Confidence 46678999999999999999888999999988999999999999887642211 111125566766 67889
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+.+.+.+||+|+ +++++|+++++|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~~dl~~ 112 (113)
T cd02205 72 SPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTRSDILR 112 (113)
T ss_pred CCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEHHHhhc
Confidence 99999999999999999999999997 799999999999875
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.3e-10 Score=106.73 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=91.8
Q ss_pred ceeEEeCCCCHHHHHHHHHhcC-CcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEK-QSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~-~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
+++++++++++.++++.|.+.+ ++.+||+|+ ++++|+++.+|+.+....... .....+..+.++|.+ ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~~~~------~~~~ 73 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYG-RALYGKKPVSEVMDP------DPLI 73 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhh-HHHHcCCcHHHhcCC------CcEE
Confidence 5677899999999999998876 789999998 999999999999876542110 011234568888887 7889
Q ss_pred eCCCCCHHHHHHHHHhcCCC---EeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVN---QVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~---~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
+.+++++.++++.|.+++.+ ..+|+++ +|+++|+||++|+++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvvs~~di~~ 118 (119)
T cd04598 74 VEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLGIGTVKDLLR 118 (119)
T ss_pred ecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEEEEEHHHHhc
Confidence 99999999999999998864 3468886 799999999999975
No 115
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.20 E-value=8e-11 Score=134.40 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=103.7
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC---CcEEEEEehHHHHHHHHHHhhhhccccccccccccc
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCS 700 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~ 700 (770)
...++.|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.... ..+.+++++|+
T Consensus 96 k~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---------~~~~~V~diMt 166 (495)
T PTZ00314 96 KRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---------DKSTPVSEVMT 166 (495)
T ss_pred cccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---------cCCCCHHHhhC
Confidence 34778899999999999999999999999999999999974 8999999999997321 13456889997
Q ss_pred cCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 701 ADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 701 ~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
+ .+++.++++++++.|++++|.+++.+.+||+|+ +++++|+||++|+++..
T Consensus 167 ~----~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-----~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 167 P----REKLVVGNTPISLEEANEVLRESRKGKLPIVND-----NGELVALVSRSDLKKNR 217 (495)
T ss_pred C----cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-----CCcEEEEEEehHhhhcc
Confidence 4 124788999999999999999999999999997 78999999999999874
No 116
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.2e-10 Score=109.50 Aligned_cols=113 Identities=26% Similarity=0.360 Sum_probs=93.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh-------------------------
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT------------------------- 687 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~------------------------- 687 (770)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 99999999999987764221000
Q ss_pred ---ccccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 688 ---SRSKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 688 ---~~~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
....+..+.++|.+ ++.++.+++++.++++.|.+++...+||++ +++++|+||++|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~------~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~------~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTK------KVITISPDASIEDAAELMVRHKIKRLPVVE------DGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 00123456677766 688999999999999999999999999998 579999999999874
No 117
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.2e-10 Score=101.22 Aligned_cols=104 Identities=25% Similarity=0.326 Sum_probs=89.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+++.+.. .+..+.++|.. ++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~----------~~~~~~~~~~~------~~~~v 65 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP----------EEEQLALLMTR------DPPTV 65 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc----------ccchHHHHhcC------CCceE
Confidence 456788999999999999988889999999889999999999997421 12235677766 67889
Q ss_pred CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 713 TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 713 ~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
.+++++.++++.|.+++.+.+||+| +|+++|+||++|+++
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~Vvd------~~~~~G~it~~d~~~ 105 (106)
T cd04638 66 SPDDDVKEAAKLMVENNIRRVPVVD------DGKLVGIVTVADIVR 105 (106)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEE------CCEEEEEEEHHHhhc
Confidence 9999999999999999999999998 469999999999875
No 118
>PRK11573 hypothetical protein; Provisional
Probab=99.16 E-value=2.8e-10 Score=127.55 Aligned_cols=127 Identities=15% Similarity=0.116 Sum_probs=105.8
Q ss_pred hcccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhccccccccc
Q 004181 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (770)
Q Consensus 620 ~l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (770)
.+++.+|+|+|++ ++..++.++++.|+++.+.+++++.+||++++ ++++|+++.+|+.....+.+ ......+.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~----~~~~~~l~ 258 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK----EFTKENML 258 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC----cCCHHHHH
Confidence 3667899999987 89999999999999999999999999999765 88999999999986543211 01111233
Q ss_pred cccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 697 dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
+++. ++..|++++++.++++.|++++.+...|+|+ .|...|+||.+||++.+-.
T Consensus 259 ~~~r-------~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-----yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 259 RAAD-------EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-----YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred hhcc-------CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-----CCCeEEEeeHHHHHHHHhC
Confidence 4444 4789999999999999999999999999998 8999999999999998653
No 119
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.14 E-value=2.6e-10 Score=107.90 Aligned_cols=108 Identities=44% Similarity=0.670 Sum_probs=81.5
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccc-------cccccccccccC---
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRS-------KKLLVSEMCSAD--- 702 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~-------~~~~V~dim~~~--- 702 (770)
++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+............ +...+.++|.+.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 5788999999999999999999999999999999999999999998775322111000 111133444310
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccC
Q 004181 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHI 740 (770)
Q Consensus 703 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~ 740 (770)
+.+..++.++++++++.+|++.|.+++.+.+||+|++.
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~ 119 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV 119 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence 00112678999999999999999999999999999743
No 120
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.14 E-value=1.9e-10 Score=134.31 Aligned_cols=128 Identities=24% Similarity=0.245 Sum_probs=105.2
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhh-----------------
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK----------------- 686 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~----------------- 686 (770)
.+|+|+|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+...+....
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~~~L 147 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENIIRTL 147 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998865431100
Q ss_pred -----------h--------------------------------c-------------------c---------------
Q 004181 687 -----------T--------------------------------S-------------------R--------------- 689 (770)
Q Consensus 687 -----------~--------------------------------~-------------------~--------------- 689 (770)
. + .
T Consensus 148 ~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ 227 (546)
T PRK14869 148 DGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVT 227 (546)
T ss_pred CcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCe
Confidence 0 0 0
Q ss_pred ---------------ccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHH
Q 004181 690 ---------------SKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRE 754 (770)
Q Consensus 690 ---------------~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~ 754 (770)
....+++++|++ +++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||++
T Consensus 228 ii~t~~dt~~t~~~l~~~~~V~~iM~~-----~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~lvGiit~~ 297 (546)
T PRK14869 228 VISTPYDTFTTARLINQSIPVSYIMTT-----EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGKVVGVISRY 297 (546)
T ss_pred EEEecccHHHHHHHhhcCCCHHHhccC-----CCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCCEEEEEEHH
Confidence 001123344440 37899999999999999999999999999997 89999999999
Q ss_pred HHHHHHH
Q 004181 755 SIILACR 761 (770)
Q Consensus 755 DIl~~~~ 761 (770)
|+++..+
T Consensus 298 dl~~~~~ 304 (546)
T PRK14869 298 HLLSPVR 304 (546)
T ss_pred Hhhcccc
Confidence 9998654
No 121
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.03 E-value=2.2e-09 Score=121.37 Aligned_cols=125 Identities=22% Similarity=0.201 Sum_probs=105.2
Q ss_pred hcccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeC-CCCcEEEEEehHHHHHHHHHHhhhhccccccccc
Q 004181 620 LKRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVS 696 (770)
Q Consensus 620 ~l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd-~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~ 696 (770)
.+++.+|+++|++ ++..++.+.++.++.+.+.+++++.+||+| +.+.++|+++.+|+.....+.+. .....
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~------~~~~~ 275 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS------DLDLR 275 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc------ccchh
Confidence 4667899999987 788999999999999999999999999999 55889999999999987653221 01111
Q ss_pred cccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 697 EMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 697 dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
.... ++..+++++++.++++.|++++.+...|+|+ .|.+.|+||.+||++.+-.
T Consensus 276 ~~~~-------~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-----yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 276 VLVR-------PPLFVPETLSLSDLLEEFREERTHMAIVVDE-----YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred hccc-------CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-----CCCeEEEeEHHHHHHHHhC
Confidence 1111 4789999999999999999999999999998 8999999999999998754
No 122
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4.7e-09 Score=110.89 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=106.6
Q ss_pred cccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 621 l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
+++++|+|+|.+ ++..++.|++.++..+.+.+..|+.+|+..++ ++.+|++..+|+.+++.+... ..-.|
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d 269 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKED 269 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhH
Confidence 677899999987 78889999999999999999999999999754 679999999999999864321 11223
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
+++- ..+|+.|++.+++.+-+..|.+++-+.-.|||+ .|.+.|+||.+||++.+-.
T Consensus 270 ~~~~----a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-----YG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 270 ILRA----ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-----YGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred HHHH----hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-----cCcEEeeeeHHHHHHHHhc
Confidence 3321 225899999999999999999999999999998 9999999999999998643
No 123
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.72 E-value=3.4e-08 Score=78.55 Aligned_cols=56 Identities=29% Similarity=0.333 Sum_probs=53.2
Q ss_pred cccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 626 V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
|+++|+++++++++++++.++.+.|.+++.+.+||+|++++++|++|.+|+.+.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 57899999999999999999999999999999999999999999999999998763
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.68 E-value=4.5e-08 Score=77.85 Aligned_cols=56 Identities=34% Similarity=0.619 Sum_probs=51.7
Q ss_pred cccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 695 V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
++++|++ ++.++++++++.++++.|.+++.+++||+|+ +++++|+||++|+++++.
T Consensus 1 v~~~m~~------~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP------PPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS------SSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred CeECCcC------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 4577887 7999999999999999999999999999997 899999999999999864
No 125
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.68 E-value=9.2e-08 Score=105.74 Aligned_cols=123 Identities=22% Similarity=0.191 Sum_probs=99.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccc-cccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL-VSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~-V~dim~~~~~~~~~~~~ 711 (770)
++..+..++++.+|++.|.+.+.+.+||||++++.+|.++..|+............ +.. +.+.-..++.-...+++
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~vvt 314 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNL---DLSCLSEALSHRPIRFEGVVT 314 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCcc---chhHHHHHhhhcccccCccEE
Confidence 67889999999999999999999999999999999999999999988764332211 111 22222222222234689
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRAL 763 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~ 763 (770)
+.+++++.++++.|..++++++.|||+ +|+++|+||..|++.++...
T Consensus 315 c~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 315 CRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred EeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeHHHHHHHHHhC
Confidence 999999999999999999999999997 89999999999999997654
No 126
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.66 E-value=4.4e-08 Score=97.35 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=106.5
Q ss_pred cccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHHHHHHHhhhhcccccccccc
Q 004181 621 KRRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSE 697 (770)
Q Consensus 621 l~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~d 697 (770)
..+++|+|+|.+ ...+++.+.++.+.+..+.+..|+.+||+.++ +.+.|++..+||++.+... .....+++
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~------~~~F~i~~ 137 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSD------AEPFDIKE 137 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCC------cccccHHH
Confidence 456789999987 68899999999999999999999999999754 6799999999999987522 12234555
Q ss_pred ccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHH
Q 004181 698 MCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALA 764 (770)
Q Consensus 698 im~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~ 764 (770)
+.. +...|+++..+...++-|+.++.+...|+|+ -|-+-|.||.+|+++.+-...
T Consensus 138 lLR-------Pav~VPESKrvd~lLkeFR~~RnHMAIViDE-----fGgVsGLVTIEDiLEqIVGdI 192 (293)
T COG4535 138 LLR-------PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-----FGGVSGLVTIEDILEQIVGDI 192 (293)
T ss_pred hcc-------cceecccchhHHHHHHHHHhhcCceEEEEec-----cCCeeeeEEHHHHHHHHhccc
Confidence 554 4678999999999999999999999999998 899999999999999865433
No 127
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.65 E-value=2.5e-07 Score=102.02 Aligned_cols=113 Identities=27% Similarity=0.279 Sum_probs=94.2
Q ss_pred cccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCC
Q 004181 630 MRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVP 709 (770)
Q Consensus 630 M~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~ 709 (770)
|........++.+..++++.|...+.+...|+|+++++.|.++.+++....... ..+.+.|.. ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~~~------~~ 312 (363)
T TIGR01186 248 MNTGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVLID------DI 312 (363)
T ss_pred ccccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhhcc------CC
Confidence 334445566788999999999999999999999999999999999998665311 125555555 56
Q ss_pred eEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHH
Q 004181 710 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRAL 763 (770)
Q Consensus 710 ~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~ 763 (770)
.++++++++.+++..|.+++.. +||+|+ +|+++|+||+.++++++.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 313 YTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHHHHHHHHHhh
Confidence 7899999999999999999998 999997 89999999999999998654
No 128
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.62 E-value=2.7e-07 Score=103.00 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=96.4
Q ss_pred ccccccccccce---eEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccc
Q 004181 623 RVFVSEVMRTRY---VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMC 699 (770)
Q Consensus 623 ~i~V~diM~~~~---~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim 699 (770)
-.++.++|.+.. +...++.+..++++.|.+.+.+.++|+|++++++|+++.+++.+.... ...+.+.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~ 343 (400)
T PRK10070 273 VFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ---------QQGLDAAL 343 (400)
T ss_pred ccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc---------CCchhhhh
Confidence 356677775432 223466789999999999999999999999999999999999765431 11255555
Q ss_pred ccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 700 SADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 700 ~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
.+ ...++++++++.+++..+.+.... +||||+ +|+++|+||+.++++++.+
T Consensus 344 ~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 344 ID------APLAVDAQTPLSELLSHVGQAPCA-VPVVDE-----DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred cc------CCceeCCCCCHHHHHHHHHhCCCc-EEEECC-----CCcEEEEEEHHHHHHHHHh
Confidence 54 567999999999999999997776 999997 8999999999999999864
No 129
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.50 E-value=1.9e-07 Score=99.54 Aligned_cols=108 Identities=23% Similarity=0.350 Sum_probs=96.4
Q ss_pred cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC---CCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccC
Q 004181 632 TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN---DNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCV 708 (770)
Q Consensus 632 ~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~---~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~ 708 (770)
.++..++|+.++.++++....++...+||.++ ..+++|+||.+|+... . .....++|+|++ +
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~--------~~~~~~~~vmt~------~ 180 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-E--------DNSLLVSDVMTK------N 180 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-h--------cccchhhhhccc------c
Confidence 46788999999999999999999999999975 3789999999999765 1 245678999998 6
Q ss_pred CeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 709 ~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+.+...+.+++++-+++++++...+||||+ +|+++-+|+|+|+.+.
T Consensus 181 ~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 181 PVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSRTDLMKN 226 (503)
T ss_pred cccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeehhhhhhh
Confidence 688899999999999999999999999998 8999999999999876
No 130
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.46 E-value=1.2e-07 Score=108.10 Aligned_cols=118 Identities=15% Similarity=0.232 Sum_probs=98.9
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccC
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSAD 702 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~ 702 (770)
+.+++++|+++++++++++++.|+++.|.+++...+||+|++|+++|+||.+|+.+.+.+.. .+|+|+.
T Consensus 194 ~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~----------~ed~~~~- 262 (449)
T TIGR00400 194 EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA----------TEDFYMI- 262 (449)
T ss_pred CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh----------HHHHHHh-
Confidence 45799999999999999999999999999999999999999999999999999998876322 2566665
Q ss_pred CCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHHHHhh
Q 004181 703 GETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRALATR 766 (770)
Q Consensus 703 ~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~~~~~ 766 (770)
...+..+++.+.++...|.+++..+++|.- +.|+++ ..+++.+++..++
T Consensus 263 -----~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~---------~~~~~t-~~ii~~f~~~l~~ 311 (449)
T TIGR00400 263 -----AAVKPLDDSYFDTSILVMAKNRIIWLLVLL---------VSSTFT-ATIISNYEDLLLS 311 (449)
T ss_pred -----cCCCCCcchhhhchHHHHHHhccchHHHHH---------HHHHHH-HHHHHHHHHHHHH
Confidence 333444678889999999999999998874 688888 8888888776544
No 131
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.32 E-value=1.3e-06 Score=89.62 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=78.8
Q ss_pred eCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhh--hccccccccccccccCCCCccCCeEeCCC
Q 004181 638 LMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAK--TSRSKKLLVSEMCSADGETCCVPCTATPN 715 (770)
Q Consensus 638 ~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~--~~~~~~~~V~dim~~~~~~~~~~~~V~~d 715 (770)
..+-+-+|.-+.+++.+. .+| |+++||.+.+.+-+.. ..+..+....|+|++ +++++++|
T Consensus 200 rvgfs~~Dld~aL~~~~E----~lD--------IdrddLe~llr~~elqa~~R~~~~LtcadIMSr------dVvtv~~~ 261 (382)
T COG3448 200 RVGFSSEDLDAALQRLGE----TLD--------IDRDDLERLLRETELQALRRRMGELTCADIMSR------DVVTVSTD 261 (382)
T ss_pred ccCCCHHHHHHHHHhcCc----eec--------CCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc------cceecCCc
Confidence 444555666666665543 334 8899999888743322 234567788999999 89999999
Q ss_pred CCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 716 MNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 716 ~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+++.+|.+.+.+++++.+||+|+ +.+++|+||++|+.+.
T Consensus 262 ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 262 TSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKH 300 (382)
T ss_pred CChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhc
Confidence 99999999999999999999998 8899999999999984
No 132
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.22 E-value=2.4e-06 Score=95.63 Aligned_cols=188 Identities=16% Similarity=0.221 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhhh--cCCchhHHH--H-HH-----HHHHHHH-HHHhcccccC
Q 004181 350 LPLYLLLGVLCGLISLTLSRCTTYMLAIV----DN-LQKD--NGIPKAVFP--V-MG-----GLAVGLI-ALMFPEILYW 413 (770)
Q Consensus 350 l~~~illGv~~Gl~g~~f~~~~~~~~~~~----~~-~~~~--~~~~~~~~~--~-l~-----gl~vg~i-~~~~P~~~g~ 413 (770)
+.++.++|++.|++|.+-....+.+..+- .+ +.+. .+-. ++.. + +| .++-+++ +++-|-..|+
T Consensus 88 W~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~-~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGS 166 (762)
T KOG0474|consen 88 WMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGC-LALSLLVLLGFNLVLVFLASVLVAYIAPVAAGS 166 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhcccc-HHHHHHHHHHHhHHHHHHHHHHHHeechhccCC
Confidence 45678999999999987766555443211 00 0010 0000 1111 0 11 1111222 3567999999
Q ss_pred CHHHHHHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHH-------HhhhcCC
Q 004181 414 GFENVDILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIN-------FAIAQSN 486 (770)
Q Consensus 414 G~~~i~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~-------~~~~~~~ 486 (770)
|.+.++.-+++-. .+..+.+..++.|++-.+.+++.|.-.|-.+|.+..||++|+.+|+-=. .+|+.
T Consensus 167 GIPevK~YLNGV~----iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~-- 240 (762)
T KOG0474|consen 167 GIPEVKCYLNGVK----IPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRY-- 240 (762)
T ss_pred CCchhhhhhcCcc----CcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhh--
Confidence 9999998777642 2333456678899999999999999999999999999999999886211 11211
Q ss_pred CccccccccccchHHHHHHHHHHHHHHHcCchHHHHHHHHHHhCCc---chHHHHHHHHHHHHHHhh
Q 004181 487 PTIHFSILEVASPQAYGLVGMAATLAGVCQVPLTSVLLLFELTQDY---RIVLPLLGAVGLSSWFTS 550 (770)
Q Consensus 487 ~~~~~~~~~~~~p~~~alvGaaA~la~~~~aPls~~vi~~Eltg~~---~~~lPlm~a~~ia~~v~~ 550 (770)
+ -+.-+..-+..+|+||..+|++|||+.++++.+|---+. .++-=+.++++++.++-+
T Consensus 241 --F----rnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 241 --F----RNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred --h----cccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 1 123467789999999999999999999999999953322 233444455555554443
No 133
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.07 E-value=5.5e-06 Score=83.83 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=63.2
Q ss_pred ccccccccccchhhhhhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 604 VESSLCIDDWNLEVEELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 604 ~~s~~~l~d~~~~~~~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
+....+..|....-.+--.+.+|+|+|+++++++++|+.+.||+++|..++...+.|+|++|+++|+||+.|+++.+.
T Consensus 214 ~vGiit~~dI~~aia~g~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 214 IVGIITLSDIAKAIANGNLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred eEEEEEHHHHHHHHHcCCccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 334444444432222223457999999999999999999999999999999999999999999999999999997753
No 134
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.03 E-value=6e-06 Score=74.91 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=51.8
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 4699999999999999999999999999999999999998899999999999875
No 135
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.02 E-value=2e-06 Score=100.68 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=97.4
Q ss_pred hhhccccccccccc-cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHH------hhhhc--
Q 004181 618 EELKRRVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYA------QAKTS-- 688 (770)
Q Consensus 618 ~~~l~~i~V~diM~-~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~------~~~~~-- 688 (770)
.......+|+++|+ ++++++++++++.++.+.|.+++++.+||+|++|+++|+||.+|+.+...+. .....
T Consensus 240 ~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~ 319 (546)
T PRK14869 240 RLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAV 319 (546)
T ss_pred HHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccc
Confidence 44456789999999 8999999999999999999999999999999999999999999999754320 00000
Q ss_pred ------c----ccccccccccccCCCCccCCeEe---CCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHH
Q 004181 689 ------R----SKKLLVSEMCSADGETCCVPCTA---TPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRES 755 (770)
Q Consensus 689 ------~----~~~~~V~dim~~~~~~~~~~~~V---~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~D 755 (770)
. .++-++.++|+. .++.+ +...+...+.++|.+.+.+..|++. ...+.||++-++
T Consensus 320 ~~~~~~~i~~iiDHH~~~~~~~~------~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia------~~ll~gIlsDT~ 387 (546)
T PRK14869 320 EGIEEAEILEIIDHHRLGDIQTS------NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA------GLLLAAILSDTL 387 (546)
T ss_pred cchhhceEEEEecCCccCCCCCC------CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH------HHHHHHHHHHhc
Confidence 0 011123444544 44433 3356677899999999998888887 457899998888
Q ss_pred HHHH
Q 004181 756 IILA 759 (770)
Q Consensus 756 Il~~ 759 (770)
.++.
T Consensus 388 ~f~~ 391 (546)
T PRK14869 388 LFKS 391 (546)
T ss_pred CccC
Confidence 7764
No 136
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.97 E-value=1e-05 Score=74.10 Aligned_cols=55 Identities=33% Similarity=0.364 Sum_probs=52.0
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+++|+|.+++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 6799999999999999999999999999999999999999999999999999864
No 137
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.92 E-value=2.9e-05 Score=89.34 Aligned_cols=117 Identities=32% Similarity=0.347 Sum_probs=83.6
Q ss_pred ccccccccc-cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhcccccccccccccc
Q 004181 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSA 701 (770)
Q Consensus 623 ~i~V~diM~-~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~ 701 (770)
..+++++|. ++++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+.............++.+...|..
T Consensus 146 ~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~ 225 (486)
T PRK05567 146 SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV 225 (486)
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc
Confidence 357999998 7899999999999999999999999999999999999999999999876421110111223445544443
Q ss_pred CCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHH
Q 004181 702 DGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESII 757 (770)
Q Consensus 702 ~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl 757 (770)
++ ++ .+..+.|.+.+.+.+ |+|.. +++..++++.-+.+
T Consensus 226 -----------~~-~~-~e~a~~L~~agvdvi-vvD~a----~g~~~~vl~~i~~i 263 (486)
T PRK05567 226 -----------GA-DN-EERAEALVEAGVDVL-VVDTA----HGHSEGVLDRVREI 263 (486)
T ss_pred -----------Cc-ch-HHHHHHHHHhCCCEE-EEECC----CCcchhHHHHHHHH
Confidence 23 22 667777888999855 67641 56776665444333
No 138
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.84 E-value=3.3e-05 Score=72.75 Aligned_cols=60 Identities=18% Similarity=0.374 Sum_probs=53.9
Q ss_pred cccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 691 KKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 691 ~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
..+..+++|+. +.+.+++|+++.++.++|.++++.++||++ +++++|-||.+||.+..-+
T Consensus 63 ~~ita~~iM~s------pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~------~~k~VGsItE~~iv~~~le 122 (187)
T COG3620 63 TRITAKTIMHS------PVVSVSPDDSISDVVNLMRDKGISQLPVIE------EDKVVGSITENDIVRALLE 122 (187)
T ss_pred ceEeHhhhccC------CeeEECchhhHHHHHHHHHHcCCccCceee------CCeeeeeecHHHHHHHHhc
Confidence 34567788888 899999999999999999999999999999 6899999999999998743
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.84 E-value=2.9e-05 Score=70.69 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=52.8
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...+++++|.++++++.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 57 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 57 CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 346799999999999999999999999999999999999998899999999999864
No 140
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.81 E-value=7.1e-05 Score=85.73 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=112.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cch-hHHHHHHHHHHHHH-------HHHhcccccCCHHHH
Q 004181 348 GELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNG-IPK-AVFPVMGGLAVGLI-------ALMFPEILYWGFENV 418 (770)
Q Consensus 348 ~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~-~~~-~~~~~l~gl~vg~i-------~~~~P~~~g~G~~~i 418 (770)
.++.+.++||++.+++++..-..+...++....+.+... ... ..+..=.+..++++ -++-|+.-|+|.+.+
T Consensus 94 eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQAvGSGIPEm 173 (931)
T KOG0476|consen 94 EDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQAVGSGIPEM 173 (931)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHheeccccccCCChhH
Confidence 456778999999999998887766666655444433221 111 11111222233322 235699999999999
Q ss_pred HHHHccCCCccCccHHHHHHHHHHHHHHHHHhhhcCCccceechHHHHHHHHhHHHHHHHHHhhhcCCCccccccccccc
Q 004181 419 DILLESRPFVKGLTADMLLQLVAAKIVATSLCRASGLVGGYYAPSLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVAS 498 (770)
Q Consensus 419 ~~l~~~~~~~~~~~~~~l~~~~~~K~~~t~lt~gsG~~gG~f~P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~ 498 (770)
+-++.+-.. .-..-+..++.|++...+++|||.|-|-.+|-..|++.....++++..-.+.+.. ...+
T Consensus 174 KtIlrGv~L----keYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~~g~~--------enes 241 (931)
T KOG0476|consen 174 KTILRGVIL----KEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQFGGFF--------ENES 241 (931)
T ss_pred HHHHHhhhH----HhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhccccc--------cCcc
Confidence 988876311 1122344578999999999999999999999999999999999988752222210 1111
Q ss_pred h-HHHHHHHHHHHHHHHcCchHHHHHHHHHHhC
Q 004181 499 P-QAYGLVGMAATLAGVCQVPLTSVLLLFELTQ 530 (770)
Q Consensus 499 p-~~~alvGaaA~la~~~~aPls~~vi~~Eltg 530 (770)
. .-.-.+|.|-..|.++.||++++++-.|+|-
T Consensus 242 R~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS 274 (931)
T KOG0476|consen 242 RNMEMLAAACAVGVACTFSAPIGGVLFSIEVTS 274 (931)
T ss_pred hHHHHHHHHhhhhheeeecCccceeEEEEEEee
Confidence 1 1122334444455666799999999999985
No 141
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.70 E-value=0.00025 Score=80.84 Aligned_cols=58 Identities=28% Similarity=0.265 Sum_probs=54.9
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
.+++++|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||.+||.+...
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATI 203 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHh
Confidence 5799999999999999999999999999999999999999999999999999998754
No 142
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.69 E-value=0.00019 Score=81.90 Aligned_cols=100 Identities=28% Similarity=0.247 Sum_probs=73.9
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCC
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~ 703 (770)
.+++++|+++++++++++++.|+++.|.+++.+.+||+|++++++|+||.+||.+........ .......+..
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a------ 220 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA------ 220 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh------
Confidence 569999999999999999999999999999999999999999999999999999876422110 0001111221
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEec
Q 004181 704 ETCCVPCTATPNMNLLSALILMDRYGVNQVPVVME 738 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~ 738 (770)
. +.......+..+.+.+.+.+. .|+|-
T Consensus 221 -----a--v~~~~~~~~~a~~Lv~aGvd~-i~~D~ 247 (479)
T PRK07807 221 -----A--VGINGDVAAKARALLEAGVDV-LVVDT 247 (479)
T ss_pred -----h--hccChhHHHHHHHHHHhCCCE-EEEec
Confidence 1 222334667777788888877 46664
No 143
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.69 E-value=6.7e-05 Score=68.65 Aligned_cols=55 Identities=29% Similarity=0.386 Sum_probs=49.6
Q ss_pred cccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHH
Q 004181 693 LLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIIL 758 (770)
Q Consensus 693 ~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~ 758 (770)
..++++|.+ ++.++++++++.++++.|.+++.+.+||+|+ +|+++|+|+.+|+.+
T Consensus 58 ~~v~dim~~------~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR------KPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC------CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 457888877 6889999999999999999999999999997 789999999999864
No 144
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00014 Score=82.01 Aligned_cols=213 Identities=16% Similarity=0.133 Sum_probs=132.5
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCcccccCCCchhHHHHHHHHHHH
Q 004181 72 RKEQPMIIGIDGHEVGNSGVIISSCLVGLLTGIGVVLFNKGVHEIRDFFWDGIPYGGASWLREKPIPAIWIRVVLVPACG 151 (770)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~a~liGv~~G~~a~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~g 151 (770)
+..|+.....+++.+-...-++.-+++|+.+|+.+.+|.++--...+++-.. ... .| .++-++++
T Consensus 289 ~~~~~vLf~V~Y~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~---~lg----------~~--pv~ev~~v 353 (696)
T KOG0475|consen 289 GNSRLVLFYVDYDRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS---KLG----------KF--PVLEVVFV 353 (696)
T ss_pred CCCceEEEEEeccCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh---hcc----------CC--cchhHHHH
Confidence 5566666666666543333345558899999999998888755444433221 001 12 13445667
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcchhhccccCCCCCCCCccccccchhhhcccCCCCCccc--cchhhhhHHHHHHHHHHH
Q 004181 152 GFIVSILNQLRYALSLDDDDDDDVQQVQDKSYPPPHPQAQAKDDISVITVSSTTSLPTIY--YDYLKIAFQPLLKAVAAC 229 (770)
Q Consensus 152 glivg~l~~~~~~~~~~~~~g~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~k~~~~~ 229 (770)
+++++++.+.-++... ..-..++++.++.-..-. +.+|+.. ..-+......+.|++.++
T Consensus 354 t~iTaiIs~~np~~r~--~~~e~i~~Lf~~C~~~~s-----------------~~l~~~~~~~~~~~L~~a~i~k~~~t~ 414 (696)
T KOG0475|consen 354 TLVTAIISLFNPETRF--NMSELITILFNKCSPSSS-----------------TSLPETTVYSAAILLLLALILKIALTI 414 (696)
T ss_pred HHHHHHHHhcCHHHHh--hHHHHHHHHHhhcCCccc-----------------ccCcccchHHHHHHHHHHHHHHHHHHH
Confidence 7788877654332211 111446665544332111 1222211 111223345678999999
Q ss_pred HHHhcCCccCCchhHHHHHHHHHHHHHhh----cc--------CCccchhhHhhcccchhHHhhccchhhHHHHHHhhcc
Q 004181 230 ITLGTGNSLGPEGPSVEIGKSIAKGVGNL----FD--------RRPRRKVSLVAAGSAAGISSGFNAAVAGCFFAVESVI 297 (770)
Q Consensus 230 ~~lg~G~s~G~EgP~v~iga~ig~~l~~~----~~--------~~~~~~r~l~~~G~aagiaa~F~aPl~g~lf~~E~~~ 297 (770)
+|-|++.+.|..-|+..+||+.|..++-. +. .+-..-......||||-+++.-|-|++-|+..+|.+.
T Consensus 415 ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG 494 (696)
T KOG0475|consen 415 FTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTG 494 (696)
T ss_pred hhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccC
Confidence 99999999999999999999999888732 21 1222333577889999999999999999999999986
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHHHhh
Q 004181 298 WPSSAADSSASLAYTTSMVILSAVIASVVSEV 329 (770)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~ 329 (770)
.- +++.+.+++..++..+...
T Consensus 495 ~l-----------~~IlPlm~av~~SkwI~d~ 515 (696)
T KOG0475|consen 495 AL-----------NYILPLMLAVMISKWIGDG 515 (696)
T ss_pred cc-----------eeHHHHHHHHHHHHHHHhc
Confidence 42 2333456666666665543
No 145
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.64 E-value=0.0001 Score=66.87 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=51.1
Q ss_pred ccccccccccceeEEeCC--CCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMT--TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~--~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.++++++.++ +++.++++.|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 457889999999999887 78999999999999999999998999999999999875
No 146
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.64 E-value=0.00011 Score=66.62 Aligned_cols=55 Identities=31% Similarity=0.308 Sum_probs=51.3
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~ 677 (770)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~ 111 (113)
T cd04607 57 DDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL 111 (113)
T ss_pred CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence 3468999999999999999999999999999999999999889999999999986
No 147
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.62 E-value=8.8e-05 Score=68.22 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=52.9
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|+|+.+|+.+
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 455799999999999999999999999999999999999999999999999999864
No 148
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.62 E-value=0.00012 Score=67.44 Aligned_cols=53 Identities=28% Similarity=0.341 Sum_probs=48.7
Q ss_pred cccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 626 V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|++.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 44578889999999999999999999999999999998899999999999863
No 149
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.60 E-value=0.00014 Score=65.76 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=52.9
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..|+.+
T Consensus 55 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 4456889999999999999999999999999999999999998899999999999864
No 150
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.58 E-value=0.00013 Score=65.40 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=52.2
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.+++++|.+++.++++++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 45799999999999999999999999999999999999999999999999999864
No 151
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.58 E-value=9.6e-05 Score=67.67 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=51.0
Q ss_pred ccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC---CcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDND---NILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~---g~lvGiVt~~dL~~ 678 (770)
...+++++|.+ +++++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 35678899985 78899999999999999999999999999977 69999999999864
No 152
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.57 E-value=0.0003 Score=78.14 Aligned_cols=121 Identities=20% Similarity=0.265 Sum_probs=93.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeC-CCCcEEEEEehHHHHHHHHHHhhhhc--cccccccccccccCCCCccCC
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVD-NDNILIGLLTLGDIEEFSKYAQAKTS--RSKKLLVSEMCSADGETCCVP 709 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd-~~g~lvGiVt~~dL~~~l~~~~~~~~--~~~~~~V~dim~~~~~~~~~~ 709 (770)
++..+.+..++-++...+.+++++.+||.| +.++++.++|.+-+.+.+........ ..-...+.|.-. ....+.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~i---g~~~~i 239 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGI---GTWSNI 239 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCc---chhhhh
Confidence 348899999999999999999999999999 56899999999999998864332111 111111121100 112247
Q ss_pred eEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 710 CTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 710 ~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
..+.+++++.+|+++|.+.++..+||||+ .|+.+|++++.|+....+
T Consensus 240 ~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~~Dv~~l~~ 286 (381)
T KOG1764|consen 240 ASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSRFDVIHLAR 286 (381)
T ss_pred eeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceehhhhhhhhh
Confidence 78999999999999999999999999998 788899999999988754
No 153
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.56 E-value=0.00012 Score=66.38 Aligned_cols=56 Identities=32% Similarity=0.324 Sum_probs=51.4
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+.++.++|.++++++++++++.++++.|.+++...+||+|+ ++++|+|+.+|+.+
T Consensus 58 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 346789999999999999999999999999999999999997 99999999999864
No 154
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.55 E-value=0.00025 Score=81.44 Aligned_cols=59 Identities=25% Similarity=0.225 Sum_probs=54.5
Q ss_pred ccccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHH
Q 004181 622 RRVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (770)
Q Consensus 622 ~~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l 680 (770)
.+.+|+++|++ +++++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+..
T Consensus 159 ~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 159 LDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred CCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 35689999996 888999999999999999999999999999999999999999998754
No 155
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.54 E-value=0.00016 Score=65.85 Aligned_cols=57 Identities=32% Similarity=0.395 Sum_probs=52.8
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|++|+++|+||.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 456789999999999999999999999999999999999998899999999999975
No 156
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.54 E-value=0.00016 Score=65.08 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=52.6
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~ 679 (770)
+.+++++|.+++..+.+++++.++++.|.+++...+||+|++++++|+|+..|+.+.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 457889999999999999999999999999999999999988999999999999764
No 157
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00018 Score=64.14 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=51.6
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.+++++|.+++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+.+
T Consensus 51 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 51 DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 34688999999999999999999999999999999999999999999999999864
No 158
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=97.53 E-value=0.00016 Score=64.80 Aligned_cols=57 Identities=33% Similarity=0.394 Sum_probs=52.3
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...+++++|.+++..+++++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+.+
T Consensus 54 ~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 456799999999999999999999999999999999999998899999999999864
No 159
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.53 E-value=0.00016 Score=65.13 Aligned_cols=55 Identities=33% Similarity=0.405 Sum_probs=51.3
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.++++++++++++.++++.|.+++...+||+|++++++|++|.+|+.+
T Consensus 56 ~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 4788999999999999999999999999999999999998899999999999864
No 160
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.51 E-value=0.0002 Score=64.60 Aligned_cols=55 Identities=29% Similarity=0.358 Sum_probs=51.4
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.++..++++++++.++++.|.+++...+||+|++++++|+|+..|+.+
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 4799999999999999999999999999999999999998899999999999864
No 161
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.50 E-value=0.00012 Score=66.29 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=49.9
Q ss_pred cccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.++.++|.+ +++++.+++++.++++.|.+++.+.+||+|++++++|+++.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 4578899975 3678999999999999999999999999998899999999999853
No 162
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.50 E-value=0.00018 Score=65.94 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=47.7
Q ss_pred cccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 626 V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..+.|..++.++++++++.++++.|.+++.+.+||+|++++++|+||.+|+.+
T Consensus 67 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 67 RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 34556677899999999999999999999999999998899999999999864
No 163
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.48 E-value=0.0002 Score=64.51 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=50.7
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..+++++|.+++.++++++++.++++.|.+++...+||+| +++++|+||.+|+.+
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 4579999999999999999999999999999999999998 589999999999874
No 164
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.47 E-value=0.00019 Score=64.45 Aligned_cols=56 Identities=30% Similarity=0.327 Sum_probs=51.7
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++..+++++++.++++.|.+++.+.+||+| +++++|+||.+|+.+
T Consensus 54 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 45689999999999999999999999999999999999999 889999999999864
No 165
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=97.47 E-value=0.00025 Score=63.13 Aligned_cols=54 Identities=26% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 625 ~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+++++|.+....+.+++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 578999988889999999999999999999999999998899999999999864
No 166
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=97.47 E-value=0.00024 Score=63.48 Aligned_cols=55 Identities=25% Similarity=0.351 Sum_probs=51.2
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 5688999999999999999999999999999999999999899999999999863
No 167
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.00022 Score=65.31 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=52.6
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|++++++|++|..|+.+
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 456789999999999999999999999999999999999998899999999999864
No 168
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.46 E-value=0.0002 Score=65.66 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=52.7
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++..+++++++.++++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 456788999999999999999999999999999999999998899999999999874
No 169
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=97.46 E-value=0.00023 Score=63.91 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=51.0
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 5688999999999999999999999999999999999998899999999999863
No 170
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.46 E-value=0.00061 Score=78.42 Aligned_cols=61 Identities=30% Similarity=0.339 Sum_probs=56.2
Q ss_pred cccccccccccc--eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHH
Q 004181 622 RRVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKY 682 (770)
Q Consensus 622 ~~i~V~diM~~~--~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~ 682 (770)
.+.+|+++|+++ ++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+....
T Consensus 161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 356899999977 8899999999999999999999999999999999999999999988753
No 171
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.45 E-value=0.00017 Score=65.04 Aligned_cols=55 Identities=29% Similarity=0.395 Sum_probs=51.2
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+..
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 5789999999999999999999999999999999999998899999999999863
No 172
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.45 E-value=0.00025 Score=64.37 Aligned_cols=55 Identities=33% Similarity=0.375 Sum_probs=50.3
Q ss_pred cccccccccceeEEeC--CCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLM--TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~--~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+++++|.++..++.. ++++.++++.|.+++...+||+|++++++|+||.+|+.+
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 4688999988888877 999999999999999999999998899999999999864
No 173
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=97.42 E-value=0.0003 Score=62.97 Aligned_cols=56 Identities=38% Similarity=0.407 Sum_probs=50.3
Q ss_pred ccccccccccceeEEeC-CCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLM-TTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~-~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++..+.+ ++++.++++.|.+.+.+.+||+|++++++|+|+.+|+.+
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 45788999887777777 999999999999999999999998899999999999864
No 174
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.42 E-value=0.00054 Score=78.80 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=54.9
Q ss_pred cccccccccc--ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 623 RVFVSEVMRT--RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 623 ~i~V~diM~~--~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
+.+++++|++ +++++++++++.|+++.|.+++.+.+||+|++++++|+||.+|+.+...
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 4689999998 8999999999999999999999999999999999999999999997653
No 175
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.42 E-value=0.00023 Score=65.52 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=51.8
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.++++++++++++.++++.|.+.+.+.+||+|++++++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 45788999999999999999999999999999999999998899999999999875
No 176
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=97.42 E-value=0.00024 Score=64.43 Aligned_cols=55 Identities=27% Similarity=0.237 Sum_probs=50.9
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC--CcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDND--NILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~--g~lvGiVt~~dL~~ 678 (770)
.+++++|.++++++.+++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 45888999999999999999999999999999999999987 89999999999874
No 177
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.40 E-value=0.00027 Score=63.73 Aligned_cols=55 Identities=33% Similarity=0.419 Sum_probs=51.1
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 3589999999999999999999999999999999999998899999999999864
No 178
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.38 E-value=0.00027 Score=62.86 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=42.6
Q ss_pred eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHH
Q 004181 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (770)
Q Consensus 634 ~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~ 678 (770)
+.++.+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+.+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 7889999999999999999999999999987 99999999999864
No 179
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.37 E-value=0.00036 Score=65.86 Aligned_cols=55 Identities=27% Similarity=0.398 Sum_probs=51.0
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..+++++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+|+.+|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45799999999999999999999999999999999999986 99999999999864
No 180
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.36 E-value=0.00034 Score=62.85 Aligned_cols=55 Identities=29% Similarity=0.433 Sum_probs=50.8
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+|+.+|+.+
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 45799999999999999999999999999999999999987 99999999999864
No 181
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.35 E-value=0.00055 Score=50.83 Aligned_cols=47 Identities=40% Similarity=0.636 Sum_probs=42.4
Q ss_pred CeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 709 PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 709 ~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
+.++.+++++.++.+.|.+.+.+.+||+++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHhh
Confidence 467899999999999999999999999996 68999999999997754
No 182
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.35 E-value=0.00043 Score=62.09 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=50.4
Q ss_pred ccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 625 ~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
++.++|.+++.++.+++++.++++.|.+++...+||+|++++++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 588999999999999999999999999999999999999999999999999864
No 183
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.35 E-value=0.00038 Score=65.04 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=51.9
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+...++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|++|.+|+.+
T Consensus 75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 3445899999999999999999999999999999999999997 99999999999874
No 184
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.34 E-value=0.00022 Score=66.12 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=48.4
Q ss_pred cccccccccccceeEE------eCCCCHHHHHHHHHhcCCcEEEEeCCC-CcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTV------LMTTLLIEALTLMLAEKQSCAMIVDND-NILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v------~~~~tl~eal~~m~~~~~~~lpVVd~~-g~lvGiVt~~dL~~ 678 (770)
.+.+++++|.++...+ .+++++.++++.|.+++.+.+||+|++ ++++|+||.+|+.+
T Consensus 62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3467899998765443 368899999999999999999999987 79999999999974
No 185
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.33 E-value=0.00026 Score=66.42 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=51.9
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||.+|+.+
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 79 HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 44679999999999999999999999999999999999999 899999999999864
No 186
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00027 Score=63.75 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=50.8
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++..+.+++++.++++.|.+++.+.+||+|+ ++++|+||.+|+.+
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 45788999999999999999999999999999999999997 99999999999974
No 187
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.32 E-value=0.00043 Score=62.33 Aligned_cols=56 Identities=38% Similarity=0.392 Sum_probs=50.7
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++..+++++++.++++.|.+++.+.+||+|++ +++|+|+.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 3467899999999999999999999999999999999999865 9999999999864
No 188
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.32 E-value=0.00037 Score=62.75 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=50.6
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|+||..|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 56 EKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 34788999999999999999999999999999999999997 99999999999863
No 189
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=97.32 E-value=0.00049 Score=61.70 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=51.1
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|++++++|+++..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999864
No 190
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=97.31 E-value=0.00038 Score=62.67 Aligned_cols=56 Identities=25% Similarity=0.285 Sum_probs=52.0
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCC-CCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDN-DNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~-~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|+++.+|+..
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 36899999999999999999999999999999999999997 799999999999864
No 191
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=97.31 E-value=0.00039 Score=75.83 Aligned_cols=57 Identities=25% Similarity=0.304 Sum_probs=53.2
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~ 679 (770)
..+++++|++++.++.+++++.++++.|.+++...+||+|++++++|+||.+|+.++
T Consensus 262 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 346899999999999999999999999999999999999988999999999999864
No 192
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.00032 Score=63.54 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=48.7
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.+++++|.+++.++.+++++.++++.|.+.+ .+||+|++++++|++|.+|+.+
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 56799999999999999999999999998754 5999998999999999999874
No 193
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.31 E-value=0.0003 Score=64.31 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=52.1
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
....++.++|.++..++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 3456788999999999999999999999999999999999997 99999999999874
No 194
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=97.29 E-value=0.00044 Score=62.15 Aligned_cols=55 Identities=31% Similarity=0.381 Sum_probs=51.0
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.++++.+++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 46789999999999999999999999999999999999987 99999999999864
No 195
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=97.29 E-value=0.00042 Score=62.38 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=50.5
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..+++++|.++...+++++++.++++.|.+++...+||+|+ ++++|+||.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 45788999999999999999999999999999999999985 89999999999864
No 196
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.29 E-value=0.00054 Score=63.42 Aligned_cols=52 Identities=29% Similarity=0.365 Sum_probs=47.6
Q ss_pred ccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 627 SEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 627 ~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+.|.++..++++++++.++++.|.+++.+.+||+|++++++|+||..|+.+
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 3567788999999999999999999999999999998899999999999864
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.28 E-value=0.00074 Score=50.13 Aligned_cols=47 Identities=34% Similarity=0.323 Sum_probs=42.5
Q ss_pred eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHH
Q 004181 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (770)
Q Consensus 634 ~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l 680 (770)
+.++.+++++.++.+.|.+++.+.+||+|++++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999997653
No 198
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.28 E-value=0.00054 Score=61.65 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=51.2
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.++++++.+++++.++++.|.+++...+||+|++|+++|++|.+|+.+
T Consensus 56 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 35788999999999999999999999999988899999998899999999999864
No 199
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.27 E-value=0.00049 Score=61.10 Aligned_cols=53 Identities=28% Similarity=0.380 Sum_probs=49.7
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIE 677 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~ 677 (770)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|++|.+|+.
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 4688999999999999999999999999999999999997 9999999999986
No 200
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.26 E-value=0.00046 Score=63.24 Aligned_cols=55 Identities=31% Similarity=0.403 Sum_probs=51.3
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.++++.+++++++.++++.|.+++...+||+|++++++|+++.+|+.+
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 4688999999999999999999999999999999999998899999999999875
No 201
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=97.24 E-value=0.00076 Score=72.48 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=68.5
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCC
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~ 703 (770)
.++.++|++. .++++++++.++++.|++++.+.+||+|+.|.++|+||.+|+.+.+...-.......+ -.++-..
T Consensus 133 ~~l~~l~r~~-~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~--~~~i~~~-- 207 (292)
T PRK15094 133 FSMDKVLRQA-VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEED--DIDFRQL-- 207 (292)
T ss_pred CCHHHHcCCC-cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccccccc--ccccEEe--
Confidence 4578888764 4899999999999999999999999999989999999999999987521110000000 0011110
Q ss_pred CCccCCeEeCCCCCHHHHHHHHH
Q 004181 704 ETCCVPCTATPNMNLLSALILMD 726 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~ 726 (770)
....+.++-.+++.+..+.+.
T Consensus 208 --~~~~~~v~G~~~l~dl~~~l~ 228 (292)
T PRK15094 208 --SRHTWTVRALASIEDFNEAFG 228 (292)
T ss_pred --CCCeEEEEeccCHHHHHHHhC
Confidence 113467888899988887763
No 202
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.21 E-value=0.0022 Score=73.27 Aligned_cols=59 Identities=34% Similarity=0.351 Sum_probs=54.8
Q ss_pred ccccccccc-cceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 623 RVFVSEVMR-TRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 623 ~i~V~diM~-~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
..+++++|+ ++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+.+...
T Consensus 142 ~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 142 GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 467999999 59999999999999999999999999999999999999999999998753
No 203
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=97.20 E-value=0.00063 Score=60.69 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=49.0
Q ss_pred ccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 625 FVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 625 ~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
++.++|.++..++++++++.++++.|.+++.+.+||+| +++++|++|.+|+.+
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 57888999999999999999999999999999999998 699999999999864
No 204
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=97.19 E-value=0.00057 Score=74.78 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=52.5
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEF 679 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~ 679 (770)
.+.+|+++|++++.++.+++++.++++.|.+++.+.+||+| +++++|+||.+|+.+.
T Consensus 267 ~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 267 RQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 34689999999999999999999999999999999999997 6899999999999864
No 205
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.17 E-value=0.0012 Score=62.42 Aligned_cols=49 Identities=27% Similarity=0.104 Sum_probs=45.0
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHh
Confidence 4678999999999999999999999999997 799999999999998764
No 206
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=97.16 E-value=0.00076 Score=61.55 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=51.9
Q ss_pred ccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 621 KRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 621 l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
....++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 64 ~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 64 LLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred hcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 4456799999999999999999999999999999999999986 99999999999864
No 207
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=97.14 E-value=0.00071 Score=60.77 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=47.9
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++| +++.++.+++++.++++.|.+++.+.+||+|++++++|++|.+|+.+
T Consensus 57 ~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3566666 46789999999999999999999999999998899999999999863
No 208
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.12 E-value=0.00084 Score=62.21 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=50.7
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeC--CCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~dL~~ 678 (770)
.+.++.++|.++++++++++++.++++.|.+.+...+||++ ++++++|+||.+|+.+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 69 LDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred ccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 34678999999999999999999999999999888999984 4699999999999864
No 209
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.0011 Score=58.50 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=42.9
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
++..+++++++.++++.|.+++...+||+|+ +|+++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 4678999999999999999999999999997 7899999999998763
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.10 E-value=0.0013 Score=73.10 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=78.5
Q ss_pred hhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccc
Q 004181 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEM 698 (770)
Q Consensus 619 ~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~di 698 (770)
+..+-++++++|.+.......+.+ .+++. ++.+.+.|+|+ |+++.++........ .+..+++
T Consensus 269 ~~~~~l~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~- 330 (382)
T TIGR03415 269 NPLNVLTARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWA-------AEQEVES- 330 (382)
T ss_pred CcccceeHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhcc-------cccchhh-
Confidence 456667999999553333333323 44433 67888999985 889888876543210 1112343
Q ss_pred cccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 699 CSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 699 m~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
+.. +..++++|+++.|++..+.+.+. .++|+| +|+++|+|++.++++++.
T Consensus 331 ~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~------~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEA------APTVINPDTLMRDVLAARHRTGG-AILLVE------NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcc------cCcccCCCCcHHHHHHHHhcCCC-CeEEee------CCeEEEEEeHHHHHHHHh
Confidence 333 46789999999999999988776 588888 699999999999999874
No 211
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.09 E-value=0.0013 Score=74.12 Aligned_cols=96 Identities=18% Similarity=0.036 Sum_probs=70.0
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCC
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADG 703 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~ 703 (770)
.+++++|++ +..+++++++.++++.|++++.+..+|+|+.|..+|+||.+|+.+.+...-.+..+.+ ++.+.+
T Consensus 255 ~~l~~~~~~-~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~----~~~i~~-- 327 (408)
T TIGR03520 255 FDWQSLLRE-PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE----DLIYSK-- 327 (408)
T ss_pred CCHHHHcCC-CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC----ccceEE--
Confidence 457788864 6799999999999999999999999999999999999999999988742111000001 111111
Q ss_pred CCccCCeEeCCCCCHHHHHHHHHh
Q 004181 704 ETCCVPCTATPNMNLLSALILMDR 727 (770)
Q Consensus 704 ~~~~~~~~V~~d~sL~eal~~m~~ 727 (770)
..+..+.++.+++++|..+.+.-
T Consensus 328 -~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 328 -IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred -eCCCeEEEEeccCHHHHHHHhCC
Confidence 01245778889999999888743
No 212
>COG0517 FOG: CBS domain [General function prediction only]
Probab=97.09 E-value=0.00096 Score=60.39 Aligned_cols=52 Identities=46% Similarity=0.515 Sum_probs=49.3
Q ss_pred ccccccccceeEEeCCCCHHHHHHHHHh-cCCcEEEEeCCCC-cEEEEEehHHH
Q 004181 625 FVSEVMRTRYVTVLMTTLLIEALTLMLA-EKQSCAMIVDNDN-ILIGLLTLGDI 676 (770)
Q Consensus 625 ~V~diM~~~~~~v~~~~tl~eal~~m~~-~~~~~lpVVd~~g-~lvGiVt~~dL 676 (770)
++.++|.+++.++.+++++.++.+.|.+ ++.+.+||+|+++ +++|++|..|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence 6899999999999999999999999999 7999999999886 99999999987
No 213
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0011 Score=60.39 Aligned_cols=57 Identities=26% Similarity=0.243 Sum_probs=49.5
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCc---EEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQS---CAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~---~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+.++.++|.+++.++.+++++.++++.|.+++.. ..+|+|++++++|+|+.+|+.+
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 45679999999999999999999999999887753 4568888899999999999864
No 214
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.03 E-value=0.00091 Score=70.50 Aligned_cols=115 Identities=20% Similarity=0.232 Sum_probs=87.8
Q ss_pred hhhhccccccccccccc--eeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccc
Q 004181 617 VEELKRRVFVSEVMRTR--YVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLL 694 (770)
Q Consensus 617 ~~~~l~~i~V~diM~~~--~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~ 694 (770)
..+..+-++++++|.+. ...-.+...-..+++.+.+...+.+.+++.+++.+|+|+..++.+.
T Consensus 267 ~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--------------- 331 (386)
T COG4175 267 NVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA--------------- 331 (386)
T ss_pred cCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------
Confidence 34556677999999952 2222223344567888888887788888888889999999888643
Q ss_pred cccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 695 VSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 695 V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
.+.+ .+.++.+|+++.+.+....+... .++|+|+ +++++|+|++.++++++.
T Consensus 332 ---~~~~------~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-----~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ---ALID------DVLTVDADTPLSEILARIRQAPC-PVAVVDE-----DGRYVGIISRGELLEALA 383 (386)
T ss_pred ---cccc------cccccCccchHHHHHHHHhcCCC-ceeEEcC-----CCcEEEEecHHHHHHHHh
Confidence 1122 46788999999999998887766 7889998 899999999999999874
No 215
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.00 E-value=0.0014 Score=69.52 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=60.4
Q ss_pred hhccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHh
Q 004181 619 ELKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (770)
Q Consensus 619 ~~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~ 684 (770)
+..++.++..+|++++.++.+.+++..+.+.|.-.+.+-+||+|++.+++|+||++|+.+.+...+
T Consensus 244 ~~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 244 DKKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred cCCCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 445677899999999999999999999999999999999999999999999999999999887543
No 216
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.99 E-value=0.0024 Score=59.20 Aligned_cols=50 Identities=24% Similarity=0.518 Sum_probs=45.2
Q ss_pred CCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 708 VPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 708 ~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+++.+|+++...+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 5788999999999999999999999999997 7899999999999976543
No 217
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.94 E-value=0.0014 Score=58.78 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=45.7
Q ss_pred ccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 629 iM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+|.+++.++++++++.++++.|.+++.+.+||++ +++++|+|+.+|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 8888999999999999999999999999999995 789999999999864
No 218
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.90 E-value=0.0013 Score=58.62 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=47.0
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
..++.++|.+++.++++++++.++.+.|.+ .. ..||+|++++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 56 SLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence 357889999999999999999999999988 33 4788998899999999999874
No 219
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0015 Score=73.74 Aligned_cols=63 Identities=25% Similarity=0.308 Sum_probs=58.3
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHh
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ 684 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~ 684 (770)
.+.+++++|.++++++.++++.+|+.+.+.+++.-.+||||++++++|+||.+|+...+.+..
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999887543
No 220
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.80 E-value=0.0024 Score=56.47 Aligned_cols=53 Identities=38% Similarity=0.421 Sum_probs=49.2
Q ss_pred cccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 626 VSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 626 V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
+.++|.++...+.+++++.++++.|.+.+.+.+||+|++++++|+++.+|+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 66788889999999999999999999999999999999999999999999864
No 221
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.75 E-value=0.0028 Score=72.70 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=54.4
Q ss_pred ccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHH
Q 004181 690 SKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACR 761 (770)
Q Consensus 690 ~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~ 761 (770)
....+++++|.+ ++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||.+|+.+.+.
T Consensus 332 l~~~~v~~im~~------~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 332 LKNATVKDLHLP------APVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred hccCCHHHhCcC------CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 456778999987 7899999999999999999999999999997 789999999999988654
No 222
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0029 Score=60.15 Aligned_cols=56 Identities=27% Similarity=0.424 Sum_probs=51.2
Q ss_pred cccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 622 RRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 622 ~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 87 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 87 GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 356788999999999999999999999999999999999987 89999999999863
No 223
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.66 E-value=0.0028 Score=67.18 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=51.0
Q ss_pred cccccccccCCCCccC-CeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 693 LLVSEMCSADGETCCV-PCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 693 ~~V~dim~~~~~~~~~-~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
.+++++|++ + +.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+|+.+|+.+..
T Consensus 155 ~~v~~im~~------~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQT------TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCC------CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 467888877 5 789999999999999999999999999997 79999999999998764
No 224
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.0034 Score=55.92 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=48.6
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 3577889889999999999999999999999999999984 79999999999864
No 225
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.42 E-value=0.0047 Score=69.60 Aligned_cols=61 Identities=30% Similarity=0.377 Sum_probs=56.1
Q ss_pred hccccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 620 LKRRVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 620 ~l~~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
.....+|+++|+.++.+++.++-+-||.-.|.+++++++||++ +|+++|+||..||.+...
T Consensus 210 ~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 210 RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 3445799999999999999999999999999999999999997 799999999999998764
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.21 E-value=0.0096 Score=65.99 Aligned_cols=57 Identities=26% Similarity=0.291 Sum_probs=52.6
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
-.+.+.|.++..++++++++.+++..|.++++. +||+|++|+++|+|+..++.+.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 302 QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 357788888899999999999999999999998 999999999999999999998875
No 227
>PRK11573 hypothetical protein; Provisional
Probab=96.05 E-value=0.02 Score=64.67 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=55.1
Q ss_pred ccccccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 690 SKKLLVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 690 ~~~~~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
.++..++|+|++ ..+...++.+++++++.+.+.+++..++||.+++ .++++|+|..+|++...
T Consensus 184 l~~~~v~eiMtP----r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~----~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 184 LEKVTVDDIMVP----RNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLM 246 (413)
T ss_pred cCCCChhhcCCc----cceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC----CCceEEEEEHHHHHHHh
Confidence 567889999998 3467889999999999999999999999999862 47899999999998754
No 228
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.039 Score=61.97 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=51.5
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
.++.+.+.++..++++++++.+++..+.++... +||+|++|+++|+|+..++.+.+.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 337 QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 357778888889999999999999999997766 999999999999999999999875
No 229
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.99 E-value=0.057 Score=58.68 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=53.8
Q ss_pred ccccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHH
Q 004181 623 RVFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFS 680 (770)
Q Consensus 623 ~i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l 680 (770)
...++|+|+++.++.+.+.+++++-+.+.+++...+||||++++++.++++.||.+.-
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 4679999999999999999999999999999999999999999999999999998753
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=94.95 E-value=0.079 Score=60.28 Aligned_cols=87 Identities=20% Similarity=0.047 Sum_probs=62.4
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhh-ccccccccccccccCCCCccCCeE
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKT-SRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~-~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++..+++++++.++++.|++++.+-..|+|+.|...|+||.+|+.+.+.-.-.+. +..++..+.... ... +.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~------~~~-~~ 352 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRD------DDG-WL 352 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEec------CCc-EE
Confidence 7889999999999999999999999999999999999999999998875211100 000011111111 113 67
Q ss_pred eCCCCCHHHHHHHHH
Q 004181 712 ATPNMNLLSALILMD 726 (770)
Q Consensus 712 V~~d~sL~eal~~m~ 726 (770)
++..++++|..+.+.
T Consensus 353 v~G~~~l~e~~~~l~ 367 (429)
T COG1253 353 VDGRVPLEELEELLG 367 (429)
T ss_pred EeccccHHHHHHHhC
Confidence 888888888877654
No 231
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.27 Score=53.28 Aligned_cols=87 Identities=22% Similarity=0.126 Sum_probs=60.9
Q ss_pred ceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEe
Q 004181 633 RYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTA 712 (770)
Q Consensus 633 ~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V 712 (770)
++..+++++++.+-+..|++++.+...|||+-|.+.|+||.+|+.+.+--.- .+..+...+++... ...-..+
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdf---tde~d~~~~ev~~q----~dgs~ii 348 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDF---TDEHDTLAKEVIPQ----SDGSFII 348 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccc---cccCcccchhhccc----CCCcEEE
Confidence 6788999999999999999999999999999999999999999987763111 01111222222211 1123567
Q ss_pred CCCCCHHHHHHHHH
Q 004181 713 TPNMNLLSALILMD 726 (770)
Q Consensus 713 ~~d~sL~eal~~m~ 726 (770)
+-+.++.|.-+.|.
T Consensus 349 dGs~~iRdlNr~l~ 362 (423)
T COG4536 349 DGSANVRDLNRALD 362 (423)
T ss_pred eCCCcHHHHHHhcC
Confidence 77777777665554
No 232
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=93.14 E-value=0.022 Score=57.57 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=70.3
Q ss_pred CHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeEeCCCCCHHHH
Q 004181 642 LLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCTATPNMNLLSA 721 (770)
Q Consensus 642 tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~V~~d~sL~ea 721 (770)
+-.|.+.++++...+.+ +|.+ |+.-+...+. ..+..|+|+|.++ ....++..+.++.+.
T Consensus 33 nr~eLl~liRdse~n~L--iD~d-------t~~mlEGvm~--------iadl~vrDiMIPR----SQM~~l~~~~~l~~~ 91 (293)
T COG4535 33 NREELLELIRDSEQNEL--IDAD-------TLDMLEGVMD--------IADLRVRDIMIPR----SQMITLKRNQTLDEC 91 (293)
T ss_pred CHHHHHHHHHHhhhccc--cChh-------HHHHHHHHHH--------HHHhhHhhhcccH----HHheeccccCCHHHH
Confidence 56778888877655442 2322 2222222221 3456789999873 345789999999999
Q ss_pred HHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 722 LILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 722 l~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
+..+.+....++||+.++ ++++.||+-.+|+++.++.
T Consensus 92 l~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~ 128 (293)
T COG4535 92 LDVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRS 128 (293)
T ss_pred HHHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcC
Confidence 999999999999999873 6789999999999998654
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.18 E-value=1.4 Score=45.79 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHh---------hhhccccccccccccccCCCCccCCeE
Q 004181 641 TLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQ---------AKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 641 ~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~---------~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
-.+.||+++- +.+.|.| +|+++=+=+..++.+...++- ..........+.+.|.+...... ..
T Consensus 194 HDidEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~--~~ 265 (309)
T COG1125 194 HDIDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADG--EP 265 (309)
T ss_pred cCHHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccC--Cc
Confidence 3456776543 4566776 799999999888876543210 00112234445555554211111 23
Q ss_pred eCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
+.......+++..+...+...+||+|+ +|+++|.||+.|++..
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 445556677888888999999999998 8999999999999864
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.62 E-value=0.73 Score=51.50 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=45.9
Q ss_pred cccccccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 624 VFVSEVMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 624 i~V~diM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
.++.+ +.++..++++++++.|++..+.++++. ++|+|+ |+++|+|+..++...+.
T Consensus 326 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 326 QEVES-LEAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cchhh-hcccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 34566 667788999999999999988887754 788885 99999999999988763
No 235
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=88.48 E-value=0.73 Score=53.23 Aligned_cols=128 Identities=18% Similarity=0.046 Sum_probs=87.3
Q ss_pred hhhcccccccccccc--ceeEEeCCCCHH-HHHHHHHhcCCcEEEEeCCCC-cEEEEEehHHHHHHHHHHhhhhcccccc
Q 004181 618 EELKRRVFVSEVMRT--RYVTVLMTTLLI-EALTLMLAEKQSCAMIVDNDN-ILIGLLTLGDIEEFSKYAQAKTSRSKKL 693 (770)
Q Consensus 618 ~~~l~~i~V~diM~~--~~~~v~~~~tl~-eal~~m~~~~~~~lpVVd~~g-~lvGiVt~~dL~~~l~~~~~~~~~~~~~ 693 (770)
...+....++|+|++ ++..+..+..+. +......+++++.+||.+.+. .-+|.+-...+.+... ........
T Consensus 198 ~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~----~~~~~~~~ 273 (498)
T KOG2118|consen 198 ALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQ----VEVPLEPL 273 (498)
T ss_pred hHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhc----cccccccc
Confidence 345667889999998 777777787776 556666789999999998642 2333322222222221 11134455
Q ss_pred ccccccccCCCCccCCeEeCCCCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHHHHH
Q 004181 694 LVSEMCSADGETCCVPCTATPNMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILACRA 762 (770)
Q Consensus 694 ~V~dim~~~~~~~~~~~~V~~d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~~~ 762 (770)
++.+.+.. ....+++++++.+.++.|.+.+.+.+.|.+ ...-+++++..|+ +...+
T Consensus 274 ~v~~~~~~------~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~------~~~~~~~~~l~~~-~~~~~ 329 (498)
T KOG2118|consen 274 PVSESALL------RLPLVPENMPLLDLLNEFQKGKSHMAVVRN------GHVDIFVLTLEDL-EEVVK 329 (498)
T ss_pred cchhhhcc------ccccCCCcccHHHHHHHHhhhhceeEEEec------CCcceeeEeccch-hhhcc
Confidence 56666655 567889999999999999988886666665 4557899999998 55443
No 236
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.28 E-value=0.88 Score=47.31 Aligned_cols=59 Identities=27% Similarity=0.276 Sum_probs=44.5
Q ss_pred hccccccccccccce----eEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHH
Q 004181 620 LKRRVFVSEVMRTRY----VTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEE 678 (770)
Q Consensus 620 ~l~~i~V~diM~~~~----~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~ 678 (770)
.+...++.+.|.+.. -.+.....-.+++..+...+...+||+|++|+++|.||..++..
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 344567777776633 22334455667888888888999999999999999999999875
No 237
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.23 E-value=2.8 Score=44.99 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=44.5
Q ss_pred ccccceeEEeCCCCHHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHH
Q 004181 629 VMRTRYVTVLMTTLLIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSK 681 (770)
Q Consensus 629 iM~~~~~~v~~~~tl~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~ 681 (770)
.+.+++.++.+++++.+.+..+.+... .++|+|++++++|+++..++..++.
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 566788899999999999888877654 6889999999999999999998864
No 238
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=57.42 E-value=1.8e+02 Score=35.87 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=13.9
Q ss_pred cchHHHHHHHHHHHHHHHcC
Q 004181 497 ASPQAYGLVGMAATLAGVCQ 516 (770)
Q Consensus 497 ~~p~~~alvGaaA~la~~~~ 516 (770)
.++....+.|.+++++|++|
T Consensus 215 ~~~~~~~~~af~GLlaG~fk 234 (764)
T TIGR02865 215 ANLYQIGVFGFAGLLGGIFK 234 (764)
T ss_pred cHHHHHHHHHHHHHHHHhhc
Confidence 34555666677778888887
No 239
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=44.90 E-value=1.3e+02 Score=36.31 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=14.0
Q ss_pred hhcccchhHHhhccchhhHHH-HHHhhc
Q 004181 270 VAAGSAAGISSGFNAAVAGCF-FAVESV 296 (770)
Q Consensus 270 ~~~G~aagiaa~F~aPl~g~l-f~~E~~ 296 (770)
-..|.+|.+.+.++-- =+++ |++..-
T Consensus 525 k~~~~~a~i~g~~gIT-EpaIPfgv~~p 551 (631)
T PRK09765 525 IETGKSTWLLGLAGIT-EGAIPMAIEDP 551 (631)
T ss_pred HHHHHHHHHHHHHhcC-cccHHHHHhcc
Confidence 3556666666666422 2445 665553
No 240
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=42.24 E-value=2.3e+02 Score=29.64 Aligned_cols=53 Identities=23% Similarity=0.395 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHc
Q 004181 463 SLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (770)
Q Consensus 463 ~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~ 515 (770)
++.+.+.+|..+|.+-+....-.-|-+..+...-.-.++.+++|..+..+|.+
T Consensus 106 alIia~IiG~vvG~la~~vi~MkIPiM~~~mtels~agaLailG~s~aiaGsf 158 (265)
T TIGR01148 106 ALVVAAIIGGVVGVLANKVIGMKIPIMERCMTEISCAGTLALLGLSVAIAGSF 158 (265)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 56778888888887776543322222111111112235555666555555543
No 241
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=41.06 E-value=4.2e+02 Score=27.82 Aligned_cols=58 Identities=26% Similarity=0.433 Sum_probs=28.5
Q ss_pred ceech--HHHHHHHHhHHHHHHHHHhhhcCCCccccccccccchHHHHHHHHHHHHHHHc
Q 004181 458 GYYAP--SLFIGAATGMAYGKFINFAIAQSNPTIHFSILEVASPQAYGLVGMAATLAGVC 515 (770)
Q Consensus 458 G~f~P--~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~alvGaaA~la~~~ 515 (770)
.+-.| ++.+.+.+|..+|.+.+....-.-|-+..+...-.-.+..+++|.++.++|.+
T Consensus 93 ~~~~PI~~liia~iiG~vvG~lan~vigMkIPiM~~smtels~agaLailG~s~a~~Gsf 152 (264)
T PRK01030 93 VLAGPIVALIIAAIIGAVVGKLANNVVGMKIPIMERSMTELSGAGALAILGFSTAIAGSF 152 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 46666 44567777777777766543322222211111112235555566555555443
No 242
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.39 E-value=45 Score=30.96 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004181 351 PLYLLLGVLCGLISLTL 367 (770)
Q Consensus 351 ~~~illGv~~Gl~g~~f 367 (770)
+..+++|+++|++|..+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46789999999988765
No 243
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=27.01 E-value=1.1e+02 Score=36.88 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCCcEEEEeCCCCcEEEEEehHHHHHHHHHHhh-hhccccccccccccccCC----CCccCCeEeCCCCC
Q 004181 643 LIEALTLMLAEKQSCAMIVDNDNILIGLLTLGDIEEFSKYAQA-KTSRSKKLLVSEMCSADG----ETCCVPCTATPNMN 717 (770)
Q Consensus 643 l~eal~~m~~~~~~~lpVVd~~g~lvGiVt~~dL~~~l~~~~~-~~~~~~~~~V~dim~~~~----~~~~~~~~V~~d~s 717 (770)
+.+..+.+...+ ..+.++|++|.++.+....++.+....... ....+. ++.+-++. .....+..|.....
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~----E~~~GTnaig~al~~~~pv~v~g~EH 135 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCA----EGIIGTNALSLAAISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccc----hhccCcCHHHHHHhcCCceEEecHHH
Confidence 344444444444 688899999999999998888766542111 011111 11111100 01124566665554
Q ss_pred HHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEe
Q 004181 718 LLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLD 752 (770)
Q Consensus 718 L~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT 752 (770)
..+. +....+...||.|+ +|+++|+|+
T Consensus 136 ~~~~---~~~~~c~aaPI~d~-----~G~liGvl~ 162 (638)
T PRK11388 136 FKQA---LHNWAFCATPVFDS-----KGRLTGTIA 162 (638)
T ss_pred HHHh---ccCceEEeeEEEcC-----CCCEEEEEE
Confidence 4443 44456778999997 799999996
No 244
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=25.46 E-value=1.1e+02 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhcCCCEeEEEeccCCCCCCeEEEEEeHHHHHHH
Q 004181 715 NMNLLSALILMDRYGVNQVPVVMEHIPGQRGQLVGLLDRESIILA 759 (770)
Q Consensus 715 d~sL~eal~~m~~~~~~~lpVVd~~~~~~~g~lvGIIT~~DIl~~ 759 (770)
...++++.+...+.+-..++|++ ++++.|+|..+|+++-
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~------~~~~~GVI~LkDivK~ 450 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE------NGRILGVIYLKDIVKP 450 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE------CCEEEEEEEehhhcch
Confidence 34688888999999999999998 6999999999999876
No 245
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=25.19 E-value=28 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.0
Q ss_pred chhhHhhcccchhHHhhccchhh
Q 004181 265 RKVSLVAAGSAAGISSGFNAAVA 287 (770)
Q Consensus 265 ~~r~l~~~G~aagiaa~F~aPl~ 287 (770)
.||.++..+++++.++++..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 58899999999999988877653
No 246
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=24.50 E-value=8.4e+02 Score=25.65 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004181 353 YLLLGVLCGLISLTLSR 369 (770)
Q Consensus 353 ~illGv~~Gl~g~~f~~ 369 (770)
.+.+|+++|++|.....
T Consensus 19 l~~~Givg~ligiYla~ 35 (262)
T PF04211_consen 19 LMALGIVGGLIGIYLAY 35 (262)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36789999999987754
No 247
>PRK01844 hypothetical protein; Provisional
Probab=23.67 E-value=1.5e+02 Score=24.81 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004181 351 PLYLLLGVLCGLISLTLSR 369 (770)
Q Consensus 351 ~~~illGv~~Gl~g~~f~~ 369 (770)
++.++++++.|+++.+|..
T Consensus 7 I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777753
No 248
>PRK10490 sensor protein KdpD; Provisional
Probab=22.90 E-value=2.8e+02 Score=34.93 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004181 316 VILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSR 369 (770)
Q Consensus 316 ~~~~~~~a~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~ 369 (770)
.+++|+++.+++.++| ..|.|.+.-++..++..+.+++++|++.|.+..-..+
T Consensus 448 ai~aavls~l~~nfFF-~~P~~Tf~v~~~~~~~t~~v~l~va~v~~~l~~r~r~ 500 (895)
T PRK10490 448 SVVATVINVASFDLFF-VAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRY 500 (895)
T ss_pred HHHHHHHHHHHHHhee-CCCceEEEEcCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777766643 4466655433333445666777788877766554433
No 249
>PRK10026 arsenate reductase; Provisional
Probab=21.37 E-value=3.8e+02 Score=25.57 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=59.7
Q ss_pred eeEEeCCCCHHHHHHHHHhcCCcEEEEeC--CCCcEEEEEehHHHHHHHHHHhhhhccccccccccccccCCCCccCCeE
Q 004181 634 YVTVLMTTLLIEALTLMLAEKQSCAMIVD--NDNILIGLLTLGDIEEFSKYAQAKTSRSKKLLVSEMCSADGETCCVPCT 711 (770)
Q Consensus 634 ~~~v~~~~tl~eal~~m~~~~~~~lpVVd--~~g~lvGiVt~~dL~~~l~~~~~~~~~~~~~~V~dim~~~~~~~~~~~~ 711 (770)
++..+.-.|.+.|++.+.++++..- ++| ++. .|..+|.+++.... ...++++++++..-+..-.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~-~~d~~~~p-----pt~~eL~~~l~~~g--------~~~~~lint~~~~yr~L~~ 71 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPT-IIHYLETP-----PTRDELVKLIADMG--------ISVRALLRKNVEPYEELGL 71 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcE-EEeeeCCC-----cCHHHHHHHHHhCC--------CCHHHHHHcCCchHHHcCC
Confidence 3444555689999999999886543 223 222 78899988876321 1233444332211111100
Q ss_pred eCCCCCHHHHHHHHHhcCC--CEeEEEeccCCCCCCeEEEEEeHHHHHHHH
Q 004181 712 ATPNMNLLSALILMDRYGV--NQVPVVMEHIPGQRGQLVGLLDRESIILAC 760 (770)
Q Consensus 712 V~~d~sL~eal~~m~~~~~--~~lpVVd~~~~~~~g~lvGIIT~~DIl~~~ 760 (770)
-..+.+.+++++.|.++.. ++=.|+++ ++.++|- ..+.+...+
T Consensus 72 ~~~~ls~~e~l~ll~~~P~LIKRPIi~~~-----~~a~i~R-p~e~v~~~l 116 (141)
T PRK10026 72 AEDKFTDDQLIDFMLQHPILINRPIVVTP-----LGTRLCR-PSEVVLEIL 116 (141)
T ss_pred CccCCCHHHHHHHHHhCccceeCcEEEcC-----CCeEEEC-CHHHHHHHh
Confidence 1135788999999998874 23223343 5777775 444444444
No 250
>PF13303 PTS_EIIC_2: Phosphotransferase system, EIIC
Probab=20.83 E-value=9.5e+02 Score=26.36 Aligned_cols=74 Identities=18% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccCCccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHH
Q 004181 316 VILSAVIASVVSEVGLGSEPAFKVPEYDFRSPGELPLYLLLGVLCGLISLTLSRCTTYMLAIVDNLQKDNGIPKAVFPVM 395 (770)
Q Consensus 316 ~~~~~~~a~~v~~~~~g~~~~f~~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (770)
.++++.+|..+.+++.+. ..++. +..=++.++++|++|.+..-....+..+.-+.-+.. --..|.+
T Consensus 96 ~~laa~ia~~~~k~i~~~------~~ldi-----il~P~v~~~~~g~ig~~~~P~v~~i~~~IG~~I~~~---t~lqP~l 161 (327)
T PF13303_consen 96 AMLAAAIAVLLGKLIGKK------TSLDI-----ILLPIVTILIGGLIGLLTLPYVSPITTWIGNVINSF---TTLQPLL 161 (327)
T ss_pred HHHHHHHHHHHHHHHccC------CCeEE-----EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCcHH
Confidence 567888888888775311 12221 222255566666777665554444444443332211 1133555
Q ss_pred HHHHHHHH
Q 004181 396 GGLAVGLI 403 (770)
Q Consensus 396 ~gl~vg~i 403 (770)
.+.+++++
T Consensus 162 Mgiliav~ 169 (327)
T PF13303_consen 162 MGILIAVV 169 (327)
T ss_pred HHHHHHHH
Confidence 56655543
Done!