BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004182
(770 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
Length = 843
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 662 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 721
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 739 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 798
Query: 722 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 765
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 799 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 842
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKAKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 MLKVDQATREYLERYVDKK 145
++KVD T+ L+ + KK
Sbjct: 158 LVKVDAKTKAQLDEWKAKK 176
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=2
Length = 838
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 662 KQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSST 721
K LI+ IP K ELF+Y ++W++ D + R+RPWI+KKI E++GEEE TLVD++ S
Sbjct: 734 KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKV 793
Query: 722 QDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 765
H +L+ + +LD+EAE+F++KMWR+LI+E + + GL
Sbjct: 794 MAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGLV 837
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 28 IPGVRPIMPPVVRPVPLPTVTPAEK---------------------PQTKVYVGKIAPTA 66
IP IM P V +PTV+ K P T V+VG I+ A
Sbjct: 40 IPVPMSIMAPAPT-VLVPTVSMVGKHLGARKDHPGLKLKENDENCGPTTTVFVGNISEKA 98
Query: 67 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126
+ +L CG V SWKR Q S G + FGFCE++ E LRALRLL+ I ++L
Sbjct: 99 SDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRALRLLHDLQIGEKKL 157
Query: 127 MLKVDQATREYLERYVDKKTENTKKLKET 155
++KVD T+ L+ + KK N ET
Sbjct: 158 LVKVDAKTKAQLDEWKAKKKANGNARPET 186
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 51.2 bits (121), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 313 KEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEK 372
K +E +R ++E E +R +ER +R K E+ ++E E ++ E ++E +RQ ++ +K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 373 ERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIR-EKEEDLADEVREEEEIAVAK 431
E E KR+++ + E+ E ++ E KR+++ R +KEE L + +E +
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE------ELKRQEQERLQKEEALKRQEQERLQKEEEL 2853
Query: 432 RRAEEEQLQQQQ 443
+R E+E+L++++
Sbjct: 2854 KRQEQERLERKK 2865
Score = 33.9 bits (76), Expect = 5.7, Method: Composition-based stats.
Identities = 52/235 (22%), Positives = 112/235 (47%), Gaps = 28/235 (11%)
Query: 280 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYERE---AERERVRKEREQR 336
K + +R + + + +R R+K+ L +KE E+ R E+E E R+E+E+
Sbjct: 2790 KRQEQERLQKEEELKRQEQERLEREKQEQL--QKEEELKRQEQERLQKEEALKRQEQERL 2847
Query: 337 RKIEEAEREYERCLKDWEYREREREKERQYEKEKE-----KERERKRKKEILYDEEEDED 391
+K EE +R+ + L+ + ERE+ + + E + K+ K K EI+ +++
Sbjct: 2848 QKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKIIKDELTKEKDEIIKNKDIKLR 2907
Query: 392 DS-RKRWRRSV----------LEEKRRKRIREKEEDLADEVRE--EEEIAVAKRRAEEEQ 438
S ++W + + L K + I++ E L + + ++ + +R E
Sbjct: 2908 HSLEQKWLKHLQNILSLKIDSLLNKNDEVIKDNETQLKTNILNSLKNQLYLNLKRELNEI 2967
Query: 439 LQQQQRDALKLLSDNA-VNGSLAEESAVESKGMDVEHDYHDDSIRENHMADPSSQ 492
+++ + + K+L N VN SL +++ ++ +D++ H D I N ++D ++
Sbjct: 2968 IKEYEENQKKILHSNQLVNDSLEQKT---NRLVDIKPTKHGD-IYTNKLSDNETE 3018
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 16/126 (12%)
Query: 280 KASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYE-REAERERVR-----KER 333
K + DR + DR +V D+ RDK R+ R+K RE DR + RE +RE++R K R
Sbjct: 836 KGQEKDRDKVREKDRDKVRDK-DRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGR 894
Query: 334 EQRR-----KIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEE 388
E+ R K E ++E ER LKD R++EREK R +++++++E+KR KE+ D++
Sbjct: 895 EKDRDKEQVKTREKDQEKER-LKD---RDKEREKVRDKGRDRDRDQEKKRNKELTEDKQA 950
Query: 389 DEDDSR 394
E SR
Sbjct: 951 PEQRSR 956
Score = 40.0 bits (92), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 94/150 (62%), Gaps = 15/150 (10%)
Query: 301 RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEA-EREYERCLKDWEYRERE 359
+GRDK+R EK RE D+ ++E E++R E+ Q +++E+ E++ ++ L+ ++R+
Sbjct: 752 KGRDKKRSKDLEKCREKDQ-DKELEKDR---EKNQDKELEKGREKDQDKELEKGREKDRD 807
Query: 360 REKERQYEKEKEKE----RERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEE 415
+E E+ EK+++KE RE+ + KE+ +E+D D R++ R V +K R ++REK+
Sbjct: 808 KEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKV-RDKDRDKVREKDR 866
Query: 416 DLADEVREEEEIAVAKRRAEEEQLQQQQRD 445
D+VRE++ + R + E+++++ RD
Sbjct: 867 ---DKVREKDRDKL--REKDREKIRERDRD 891
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 89/141 (63%), Gaps = 13/141 (9%)
Query: 301 RGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYRERER 360
+GR+K++D + EK RE DR ++E E+ R E++Q +++E+ RE KD + +E E+
Sbjct: 788 KGREKDQDKELEKGREKDR-DKEMEKAR---EKDQDKELEKG-RE-----KDQD-KELEK 836
Query: 361 EKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADE 420
+E+ +K +EK+R++ R K+ E+D D R++ R L EK R++IRE++ D E
Sbjct: 837 GQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREK-DRDKLREKDREKIRERDRDKGRE 895
Query: 421 V-REEEEIAVAKRRAEEEQLQ 440
R++E++ ++ E+E+L+
Sbjct: 896 KDRDKEQVKTREKDQEKERLK 916
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,636,149
Number of Sequences: 539616
Number of extensions: 15650990
Number of successful extensions: 248055
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2158
Number of HSP's successfully gapped in prelim test: 4960
Number of HSP's that attempted gapping in prelim test: 106302
Number of HSP's gapped (non-prelim): 58780
length of query: 770
length of database: 191,569,459
effective HSP length: 125
effective length of query: 645
effective length of database: 124,117,459
effective search space: 80055761055
effective search space used: 80055761055
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)