Query 004182
Match_columns 770
No_of_seqs 434 out of 1700
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 5.8E-69 1.3E-73 599.3 32.5 642 19-765 8-668 (668)
2 PF01480 PWI: PWI domain; Int 99.8 7E-19 1.5E-23 153.0 5.6 68 692-759 2-74 (77)
3 smart00311 PWI PWI, domain in 99.7 1.6E-17 3.5E-22 143.4 8.2 70 689-758 4-73 (74)
4 KOG2146 Splicing coactivator S 99.7 9.8E-18 2.1E-22 172.6 3.4 89 673-765 28-119 (354)
5 KOG4661 Hsp27-ERE-TATA-binding 99.5 1E-12 2.2E-17 145.6 23.0 81 52-132 403-483 (940)
6 PLN03134 glycine-rich RNA-bind 99.5 4.6E-13 1E-17 130.1 13.2 83 51-133 31-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 3.8E-13 8.2E-18 147.4 14.2 81 53-133 268-348 (352)
8 KOG0121 Nuclear cap-binding pr 99.4 1.7E-13 3.6E-18 127.5 7.3 83 51-133 33-115 (153)
9 TIGR01659 sex-lethal sex-letha 99.4 7.5E-12 1.6E-16 137.9 15.4 83 51-133 104-186 (346)
10 KOG0122 Translation initiation 99.4 6.8E-12 1.5E-16 128.1 13.0 85 49-133 184-268 (270)
11 PF00076 RRM_1: RNA recognitio 99.3 5.2E-12 1.1E-16 105.3 9.3 70 57-127 1-70 (70)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 4.9E-12 1.1E-16 138.7 11.2 81 53-133 2-82 (352)
13 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.6E-16 129.3 13.1 84 50-133 97-180 (335)
14 KOG0125 Ataxin 2-binding prote 99.2 5.1E-11 1.1E-15 125.9 12.1 82 51-134 93-174 (376)
15 KOG0145 RNA-binding protein EL 99.2 8.2E-11 1.8E-15 120.8 11.5 81 52-132 276-356 (360)
16 TIGR01645 half-pint poly-U bin 99.2 7.1E-11 1.5E-15 137.4 12.3 82 52-133 202-283 (612)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.5E-10 3.1E-15 133.5 14.5 82 52-133 293-374 (509)
18 KOG0146 RNA-binding protein ET 99.2 1.5E-11 3.2E-16 126.6 4.6 86 47-132 278-363 (371)
19 TIGR01645 half-pint poly-U bin 99.2 6.3E-11 1.4E-15 137.8 10.1 79 52-130 105-183 (612)
20 PF14259 RRM_6: RNA recognitio 99.2 1.5E-10 3.2E-15 97.6 9.1 70 57-127 1-70 (70)
21 PLN03120 nucleic acid binding 99.2 1.2E-10 2.7E-15 121.9 10.5 76 54-133 4-79 (260)
22 PLN03213 repressor of silencin 99.2 1.7E-10 3.7E-15 126.7 11.7 89 52-146 8-98 (759)
23 KOG0117 Heterogeneous nuclear 99.1 1.7E-10 3.6E-15 126.1 10.7 93 46-138 75-169 (506)
24 KOG0149 Predicted RNA-binding 99.1 7.2E-11 1.6E-15 120.3 7.3 81 51-132 9-89 (247)
25 KOG0145 RNA-binding protein EL 99.1 2.4E-10 5.3E-15 117.3 11.0 88 51-138 38-125 (360)
26 KOG0126 Predicted RNA-binding 99.1 8.9E-12 1.9E-16 122.2 0.3 81 52-132 33-113 (219)
27 TIGR01622 SF-CC1 splicing fact 99.1 2.4E-10 5.1E-15 130.1 11.5 81 53-133 185-265 (457)
28 smart00362 RRM_2 RNA recogniti 99.1 4.6E-10 9.9E-15 92.1 9.9 71 56-128 1-71 (72)
29 KOG0108 mRNA cleavage and poly 99.1 1.1E-10 2.5E-15 130.9 8.2 82 55-136 19-100 (435)
30 TIGR01659 sex-lethal sex-letha 99.1 2.4E-10 5.2E-15 126.1 10.6 81 53-133 192-274 (346)
31 TIGR01628 PABP-1234 polyadenyl 99.1 7.4E-10 1.6E-14 129.6 12.5 84 52-136 283-366 (562)
32 KOG0107 Alternative splicing f 99.1 3.4E-10 7.4E-15 110.8 8.0 76 53-133 9-84 (195)
33 TIGR01648 hnRNP-R-Q heterogene 99.1 5.4E-10 1.2E-14 129.8 10.9 80 52-132 56-136 (578)
34 COG0724 RNA-binding proteins ( 99.1 6.9E-10 1.5E-14 113.3 10.3 80 54-133 115-194 (306)
35 TIGR01628 PABP-1234 polyadenyl 99.0 6.5E-10 1.4E-14 130.0 11.0 77 56-132 2-78 (562)
36 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.1E-09 4.6E-14 123.7 15.0 78 51-133 272-350 (481)
37 PLN03121 nucleic acid binding 99.0 9E-10 1.9E-14 114.0 10.3 76 53-132 4-79 (243)
38 TIGR01622 SF-CC1 splicing fact 99.0 1E-09 2.3E-14 124.8 11.7 81 51-132 86-166 (457)
39 smart00360 RRM RNA recognition 99.0 1.3E-09 2.8E-14 88.9 9.1 70 59-128 1-70 (71)
40 KOG4207 Predicted splicing fac 99.0 5.3E-10 1.2E-14 111.8 7.4 81 53-133 12-92 (256)
41 KOG0148 Apoptosis-promoting RN 99.0 6.9E-10 1.5E-14 114.9 7.8 84 52-135 60-143 (321)
42 KOG0131 Splicing factor 3b, su 99.0 6.3E-10 1.4E-14 109.6 6.2 81 52-132 7-87 (203)
43 KOG0148 Apoptosis-promoting RN 99.0 1.8E-09 4E-14 111.8 9.3 78 50-133 160-237 (321)
44 KOG0111 Cyclophilin-type pepti 99.0 4.1E-10 8.8E-15 113.4 3.8 83 52-134 8-90 (298)
45 KOG0124 Polypyrimidine tract-b 99.0 4.8E-10 1E-14 119.5 4.5 78 54-131 113-190 (544)
46 cd00590 RRM RRM (RNA recogniti 98.9 6.5E-09 1.4E-13 85.7 10.2 74 56-130 1-74 (74)
47 KOG0130 RNA-binding protein RB 98.9 1.6E-09 3.5E-14 102.0 6.9 83 51-133 69-151 (170)
48 KOG0114 Predicted RNA-binding 98.9 1E-08 2.2E-13 92.7 11.5 82 54-138 18-99 (124)
49 TIGR01642 U2AF_lg U2 snRNP aux 98.9 6.3E-09 1.4E-13 120.0 12.7 73 50-129 171-255 (509)
50 KOG0144 RNA-binding protein CU 98.9 4.1E-09 9E-14 114.9 10.3 89 50-138 30-121 (510)
51 KOG0415 Predicted peptidyl pro 98.9 2.7E-09 5.9E-14 113.7 7.5 87 50-136 235-321 (479)
52 KOG0127 Nucleolar protein fibr 98.9 5.5E-09 1.2E-13 116.6 8.6 86 53-139 116-201 (678)
53 KOG0105 Alternative splicing f 98.8 1.1E-08 2.4E-13 100.9 6.9 81 51-134 3-83 (241)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 2.6E-08 5.6E-13 114.8 10.6 75 53-133 1-77 (481)
55 KOG0147 Transcriptional coacti 98.8 9.8E-09 2.1E-13 115.2 6.4 77 56-132 280-356 (549)
56 TIGR01648 hnRNP-R-Q heterogene 98.7 3.2E-08 7E-13 115.2 10.6 73 53-133 232-306 (578)
57 KOG0127 Nucleolar protein fibr 98.7 3.8E-08 8.2E-13 110.1 9.6 83 53-135 291-379 (678)
58 KOG0124 Polypyrimidine tract-b 98.7 1.9E-08 4.2E-13 107.5 6.8 95 38-132 187-288 (544)
59 KOG0109 RNA-binding protein LA 98.7 1.7E-08 3.8E-13 105.6 6.3 70 55-132 3-72 (346)
60 smart00361 RRM_1 RNA recogniti 98.7 6.6E-08 1.4E-12 82.3 8.5 61 68-128 2-69 (70)
61 PF13893 RRM_5: RNA recognitio 98.7 1.1E-07 2.5E-12 77.0 8.8 56 71-131 1-56 (56)
62 KOG0144 RNA-binding protein CU 98.6 4.6E-08 9.9E-13 107.0 6.3 83 50-132 420-502 (510)
63 KOG0117 Heterogeneous nuclear 98.6 1.2E-07 2.6E-12 104.2 7.9 74 53-134 258-331 (506)
64 KOG4208 Nucleolar RNA-binding 98.5 1.9E-07 4.2E-12 94.0 8.2 84 51-134 46-130 (214)
65 KOG4212 RNA-binding protein hn 98.5 2.7E-07 5.7E-12 101.0 9.1 80 52-132 42-122 (608)
66 KOG0131 Splicing factor 3b, su 98.5 1.6E-07 3.4E-12 92.9 6.2 81 52-132 94-175 (203)
67 KOG0109 RNA-binding protein LA 98.5 1.1E-07 2.4E-12 99.7 5.0 75 51-133 75-149 (346)
68 KOG1457 RNA binding protein (c 98.4 1.9E-06 4.2E-11 87.6 11.8 84 51-134 31-118 (284)
69 KOG0123 Polyadenylate-binding 98.4 6.4E-07 1.4E-11 99.8 8.9 79 52-133 74-152 (369)
70 KOG0151 Predicted splicing reg 98.4 1.1E-06 2.3E-11 101.1 9.2 84 50-133 170-256 (877)
71 KOG0146 RNA-binding protein ET 98.4 6.2E-07 1.3E-11 93.0 6.6 83 53-136 18-103 (371)
72 KOG1548 Transcription elongati 98.4 1.2E-06 2.6E-11 94.0 8.9 83 50-133 130-220 (382)
73 KOG0110 RNA-binding protein (R 98.3 7E-07 1.5E-11 103.1 6.7 91 51-142 610-700 (725)
74 KOG0132 RNA polymerase II C-te 98.3 1.1E-06 2.4E-11 102.0 7.9 74 54-133 421-494 (894)
75 KOG4206 Spliceosomal protein s 98.3 1.5E-06 3.3E-11 88.8 7.9 84 54-140 9-96 (221)
76 KOG0226 RNA-binding proteins [ 98.3 9.9E-07 2.2E-11 91.2 6.5 91 52-142 188-278 (290)
77 KOG0153 Predicted RNA-binding 98.3 2.4E-06 5.3E-11 91.7 8.3 78 50-133 224-302 (377)
78 KOG0110 RNA-binding protein (R 98.2 3E-06 6.6E-11 97.9 8.4 78 54-132 515-596 (725)
79 KOG0123 Polyadenylate-binding 98.2 3.1E-06 6.7E-11 94.4 7.8 76 55-136 2-77 (369)
80 KOG0116 RasGAP SH3 binding pro 98.2 7.6E-06 1.6E-10 92.1 10.9 76 53-129 287-362 (419)
81 KOG4212 RNA-binding protein hn 98.2 3.3E-06 7.1E-11 92.7 7.2 76 51-131 533-608 (608)
82 KOG0533 RRM motif-containing p 98.1 8.3E-06 1.8E-10 85.6 9.0 82 51-133 80-161 (243)
83 KOG2416 Acinus (induces apopto 98.1 7.2E-06 1.6E-10 93.0 8.5 78 50-133 440-521 (718)
84 KOG4205 RNA-binding protein mu 98.1 2.3E-06 5.1E-11 92.8 4.5 80 53-133 5-84 (311)
85 KOG0120 Splicing factor U2AF, 98.1 4E-06 8.7E-11 95.5 6.3 83 51-133 286-368 (500)
86 KOG2253 U1 snRNP complex, subu 97.9 0.00021 4.6E-09 82.7 16.6 34 528-562 514-547 (668)
87 KOG4209 Splicing factor RNPS1, 97.9 1.1E-05 2.4E-10 84.5 5.8 82 50-132 97-178 (231)
88 KOG4660 Protein Mei2, essentia 97.8 2E-05 4.4E-10 89.3 6.0 72 51-127 72-143 (549)
89 KOG4205 RNA-binding protein mu 97.8 2.1E-05 4.6E-10 85.5 5.8 80 53-133 96-175 (311)
90 KOG4454 RNA binding protein (R 97.8 8.9E-06 1.9E-10 82.7 2.4 79 53-133 8-86 (267)
91 KOG0106 Alternative splicing f 97.7 2.4E-05 5.2E-10 80.6 4.3 71 55-133 2-72 (216)
92 PF04059 RRM_2: RNA recognitio 97.7 0.00034 7.3E-09 63.8 9.9 78 55-132 2-85 (97)
93 KOG1190 Polypyrimidine tract-b 97.4 0.0016 3.6E-08 71.7 12.2 76 54-134 297-373 (492)
94 KOG1995 Conserved Zn-finger pr 97.3 0.00069 1.5E-08 73.7 8.7 84 51-134 63-154 (351)
95 KOG0147 Transcriptional coacti 97.2 0.00018 3.9E-09 81.7 3.0 86 49-135 174-259 (549)
96 KOG1457 RNA binding protein (c 97.2 0.0006 1.3E-08 69.9 6.1 67 52-122 208-274 (284)
97 KOG4307 RNA binding protein RB 97.0 0.0036 7.7E-08 72.8 10.5 79 52-130 864-943 (944)
98 PF11608 Limkain-b1: Limkain b 97.0 0.0026 5.7E-08 56.3 7.2 73 55-137 3-80 (90)
99 KOG4676 Splicing factor, argin 96.8 0.0004 8.7E-09 75.9 1.2 64 54-122 151-214 (479)
100 KOG1924 RhoA GTPase effector D 96.8 0.002 4.3E-08 75.7 6.8 8 60-67 608-615 (1102)
101 KOG4849 mRNA cleavage factor I 96.8 0.0028 6E-08 68.6 7.1 95 51-145 77-174 (498)
102 PF08777 RRM_3: RNA binding mo 96.8 0.0065 1.4E-07 56.3 8.5 85 55-145 2-93 (105)
103 KOG3152 TBP-binding protein, a 96.7 0.0011 2.3E-08 69.4 2.9 87 53-139 73-172 (278)
104 KOG4206 Spliceosomal protein s 96.6 0.0099 2.2E-07 61.4 9.1 78 50-132 142-220 (221)
105 KOG4210 Nuclear localization s 96.5 0.0019 4.2E-08 69.9 3.9 80 53-133 183-263 (285)
106 KOG2314 Translation initiation 96.5 0.0091 2E-07 68.3 8.7 78 52-130 56-140 (698)
107 KOG4211 Splicing factor hnRNP- 96.4 0.0087 1.9E-07 67.7 8.2 77 52-132 8-84 (510)
108 KOG1456 Heterogeneous nuclear 96.3 0.051 1.1E-06 59.7 12.8 78 50-132 283-361 (494)
109 KOG0129 Predicted RNA-binding 96.2 0.014 3E-07 66.5 7.9 64 51-114 367-431 (520)
110 COG5175 MOT2 Transcriptional r 96.1 0.013 2.9E-07 63.3 6.8 87 54-142 114-209 (480)
111 KOG0106 Alternative splicing f 96.0 0.0048 1E-07 63.9 3.4 70 51-128 96-165 (216)
112 KOG1855 Predicted RNA-binding 95.9 0.0084 1.8E-07 66.7 4.4 78 43-120 220-310 (484)
113 PF08952 DUF1866: Domain of un 95.7 0.049 1.1E-06 53.2 8.5 73 51-132 24-105 (146)
114 KOG1029 Endocytic adaptor prot 95.4 0.44 9.5E-06 56.8 16.2 12 219-230 257-268 (1118)
115 KOG4211 Splicing factor hnRNP- 95.0 0.07 1.5E-06 60.6 8.1 76 52-129 101-177 (510)
116 KOG1548 Transcription elongati 94.9 0.072 1.6E-06 58.2 7.4 82 52-137 263-355 (382)
117 PF05172 Nup35_RRM: Nup53/35/4 94.5 0.2 4.3E-06 46.2 8.4 78 54-133 6-91 (100)
118 KOG1190 Polypyrimidine tract-b 94.5 0.073 1.6E-06 59.2 6.5 78 52-133 412-490 (492)
119 KOG4676 Splicing factor, argin 94.4 0.072 1.6E-06 58.9 6.1 80 55-134 8-90 (479)
120 KOG0105 Alternative splicing f 94.4 0.19 4.2E-06 50.7 8.5 66 50-122 111-176 (241)
121 KOG4307 RNA binding protein RB 94.2 0.2 4.3E-06 59.0 9.3 79 51-130 431-510 (944)
122 KOG4849 mRNA cleavage factor I 93.9 0.24 5.2E-06 54.1 8.8 73 57-141 348-421 (498)
123 KOG0112 Large RNA-binding prot 93.8 0.13 2.9E-06 62.0 7.2 82 50-137 451-534 (975)
124 KOG0120 Splicing factor U2AF, 93.7 0.19 4E-06 58.2 8.0 64 70-133 425-491 (500)
125 KOG0128 RNA-binding protein SA 93.0 0.039 8.4E-07 66.1 1.1 79 54-133 736-814 (881)
126 PF14605 Nup35_RRM_2: Nup53/35 92.6 0.29 6.2E-06 39.8 5.3 52 55-113 2-53 (53)
127 KOG1365 RNA-binding protein Fu 92.5 0.31 6.8E-06 53.9 7.1 77 54-131 280-359 (508)
128 KOG0129 Predicted RNA-binding 92.4 0.74 1.6E-05 52.9 10.2 65 52-116 257-326 (520)
129 PTZ00121 MAEBL; Provisional 92.1 6.7 0.00014 50.4 18.3 7 108-114 945-951 (2084)
130 PTZ00266 NIMA-related protein 92.1 0.83 1.8E-05 57.5 11.1 21 668-688 874-894 (1021)
131 KOG2193 IGF-II mRNA-binding pr 91.5 0.24 5.1E-06 55.4 4.9 77 55-138 2-80 (584)
132 KOG1996 mRNA splicing factor [ 91.2 0.58 1.2E-05 50.3 7.2 64 69-132 301-365 (378)
133 KOG0128 RNA-binding protein SA 91.1 0.026 5.7E-07 67.5 -3.2 70 53-122 666-735 (881)
134 PTZ00266 NIMA-related protein 90.6 2.6 5.6E-05 53.3 13.2 7 111-117 129-135 (1021)
135 KOG0112 Large RNA-binding prot 90.3 0.2 4.3E-06 60.6 3.1 79 52-131 370-448 (975)
136 KOG1456 Heterogeneous nuclear 90.2 0.79 1.7E-05 50.7 7.3 74 59-137 127-202 (494)
137 KOG0115 RNA-binding protein p5 90.1 0.31 6.7E-06 51.5 3.9 62 55-117 32-93 (275)
138 KOG4285 Mitotic phosphoprotein 88.0 4.6 0.0001 43.9 10.9 62 56-125 199-260 (350)
139 KOG2068 MOT2 transcription fac 87.6 0.21 4.5E-06 54.6 0.7 86 55-142 78-169 (327)
140 KOG1365 RNA-binding protein Fu 86.7 1.1 2.4E-05 49.8 5.5 79 53-145 160-242 (508)
141 PF15023 DUF4523: Protein of u 85.9 3.2 7E-05 40.6 7.6 74 51-132 83-160 (166)
142 KOG4574 RNA-binding protein (c 83.0 2.4 5.2E-05 51.5 6.5 74 55-134 299-374 (1007)
143 KOG2891 Surface glycoprotein [ 82.1 65 0.0014 34.9 15.9 37 51-87 146-194 (445)
144 PF04847 Calcipressin: Calcipr 81.5 3.8 8.3E-05 41.8 6.6 60 68-133 9-70 (184)
145 PF10309 DUF2414: Protein of u 81.3 6.5 0.00014 33.2 6.7 55 54-116 5-62 (62)
146 PF03467 Smg4_UPF3: Smg-4/UPF3 80.2 2.2 4.8E-05 43.2 4.4 82 52-133 5-97 (176)
147 KOG4660 Protein Mei2, essentia 77.2 4.7 0.0001 46.9 6.3 79 54-132 361-471 (549)
148 TIGR03687 pupylate_cterm ubiqu 77.2 3.5 7.5E-05 30.2 3.3 24 726-749 4-27 (33)
149 COG5178 PRP8 U5 snRNP spliceos 75.7 2.6 5.6E-05 52.5 3.8 33 54-86 72-104 (2365)
150 KOG2202 U2 snRNP splicing fact 75.1 1.8 3.8E-05 46.0 2.0 56 77-133 92-147 (260)
151 KOG4210 Nuclear localization s 73.9 2.5 5.5E-05 46.0 2.9 81 52-132 86-166 (285)
152 KOG2135 Proteins containing th 73.0 2.5 5.4E-05 48.3 2.7 74 54-134 372-446 (526)
153 PF11517 Nab2: Nuclear abundan 71.7 19 0.00042 33.1 7.4 74 690-763 8-83 (107)
154 PF03880 DbpA: DbpA RNA bindin 70.3 20 0.00044 30.8 7.2 67 56-131 2-74 (74)
155 PF07576 BRAP2: BRCA1-associat 70.1 34 0.00073 32.2 9.1 65 56-122 15-80 (110)
156 PF08675 RNA_bind: RNA binding 68.5 16 0.00034 32.9 6.0 55 55-118 10-64 (87)
157 KOG1923 Rac1 GTPase effector F 62.5 19 0.00041 43.7 7.1 6 702-707 699-704 (830)
158 KOG4364 Chromatin assembly fac 61.2 2.9E+02 0.0064 33.6 16.1 11 104-114 80-90 (811)
159 KOG4364 Chromatin assembly fac 60.2 2.6E+02 0.0056 34.1 15.5 6 554-559 559-564 (811)
160 KOG1925 Rac1 GTPase effector F 58.5 19 0.00042 41.6 6.0 11 555-565 752-762 (817)
161 KOG2591 c-Mpl binding protein, 57.7 23 0.0005 41.6 6.5 70 52-128 173-246 (684)
162 KOG3702 Nuclear polyadenylated 53.4 16 0.00034 43.7 4.4 64 691-754 21-84 (681)
163 KOG4246 Predicted DNA-binding 53.4 6 0.00013 48.0 1.1 9 94-102 156-164 (1194)
164 PF03276 Gag_spuma: Spumavirus 52.5 14 0.0003 43.3 3.7 13 101-113 325-337 (582)
165 PF11767 SET_assoc: Histone ly 51.2 80 0.0017 27.0 7.2 55 65-128 11-65 (66)
166 KOG0226 RNA-binding proteins [ 47.6 27 0.00058 37.4 4.6 71 51-122 93-166 (290)
167 KOG0804 Cytoplasmic Zn-finger 45.6 59 0.0013 37.5 7.2 67 53-122 73-141 (493)
168 PF05639 Pup: Pup-like protein 44.3 8.1 0.00018 33.3 0.2 25 725-749 39-63 (69)
169 KOG2295 C2H2 Zn-finger protein 43.9 3.9 8.4E-05 47.6 -2.3 75 53-127 230-304 (648)
170 PF09707 Cas_Cas2CT1978: CRISP 43.0 36 0.00079 30.6 4.1 49 54-105 25-73 (86)
171 KOG2135 Proteins containing th 38.4 33 0.00072 39.6 3.9 63 692-754 7-73 (526)
172 KOG2318 Uncharacterized conser 36.3 1.4E+02 0.003 35.7 8.4 75 51-125 171-297 (650)
173 KOG4410 5-formyltetrahydrofola 35.7 2E+02 0.0043 31.5 8.8 51 52-107 328-378 (396)
174 KOG4454 RNA binding protein (R 35.5 8.9 0.00019 40.1 -1.0 76 52-128 78-157 (267)
175 PRK15319 AIDA autotransporter- 34.6 48 0.001 44.4 4.9 6 74-79 1749-1754(2039)
176 PF11671 Apis_Csd: Complementa 34.5 26 0.00057 33.7 2.0 20 356-376 27-46 (146)
177 PF11600 CAF-1_p150: Chromatin 32.6 4.2E+02 0.009 27.6 10.8 73 309-381 99-171 (216)
178 cd07354 HN_L-delphilin-R1_like 31.9 89 0.0019 27.8 4.6 47 699-746 9-58 (80)
179 KOG3938 RGS-GAIP interacting p 30.9 43 0.00092 36.2 3.0 56 698-753 264-322 (334)
180 PF02607 B12-binding_2: B12 bi 30.5 1.5E+02 0.0032 25.2 5.9 51 696-751 3-54 (79)
181 KOG4019 Calcineurin-mediated s 30.3 42 0.00091 34.3 2.8 74 54-133 10-89 (193)
182 KOG4840 Predicted hydrolases o 30.0 84 0.0018 33.5 4.9 85 54-138 37-122 (299)
183 PF13797 Post_transc_reg: Post 28.9 1.3E+02 0.0028 27.1 5.4 58 690-747 5-67 (87)
184 PRK11558 putative ssRNA endonu 28.7 72 0.0016 29.4 3.7 50 54-106 27-76 (97)
185 PF15473 PCNP: PEST, proteolyt 26.3 25 0.00053 34.7 0.3 19 529-547 88-106 (150)
186 KOG2888 Putative RNA binding p 25.4 60 0.0013 36.0 3.0 20 66-85 81-100 (453)
187 TIGR01795 CM_mono_cladeE monof 24.1 2.7E+02 0.0059 25.3 6.6 38 729-766 52-91 (94)
188 PHA01732 proline-rich protein 23.9 1.3E+02 0.0028 27.2 4.3 12 77-88 60-71 (94)
189 COG0724 RNA-binding proteins ( 23.5 1E+02 0.0022 31.0 4.3 64 51-114 222-285 (306)
190 KOG4483 Uncharacterized conser 22.7 1.9E+02 0.0042 33.0 6.3 55 54-115 391-446 (528)
191 KOG3054 Uncharacterized conser 21.9 2.9E+02 0.0063 29.7 7.1 8 560-567 258-265 (299)
192 COG5178 PRP8 U5 snRNP spliceos 21.4 82 0.0018 40.3 3.4 16 3-18 5-20 (2365)
193 KOG4672 Uncharacterized conser 20.9 2.1E+02 0.0045 32.8 6.2 55 1-57 335-389 (487)
194 PF07946 DUF1682: Protein of u 20.6 2.1E+02 0.0045 31.8 6.2 9 351-359 308-316 (321)
195 KOG1144 Translation initiation 20.4 4.7E+02 0.01 32.7 9.2 10 662-671 659-668 (1064)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=5.8e-69 Score=599.27 Aligned_cols=642 Identities=31% Similarity=0.470 Sum_probs=382.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcce
Q 004182 19 SVARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF 98 (770)
Q Consensus 19 ~~p~P~ip~ip~~~P~~~~~~~p~~vp~~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGf 98 (770)
++++|.+|++|++.+.+| ... |..|..+ +-++..+||||||...+....+..++..||.|.+|+++. |
T Consensus 8 ~a~~P~~~~~~~~~~~~p-~~~-p~qp~~~-~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------f 75 (668)
T KOG2253|consen 8 AAGMPMMPQVPMVGNGVP-YVV-PIQPVFQ-PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------F 75 (668)
T ss_pred CCCCCCCCCCccccCCcc-ccc-CCccccc-CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------h
Confidence 344455555555444444 212 2122222 245578999999999999999999999999999998754 9
Q ss_pred EEEEecCHHHHHHHHHHhCCceecCeEEEEEEehhhHHHHHHHHHhhhhhhhhhhhhcccCCCcccccccccccCCCCCC
Q 004182 99 GFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKS 178 (770)
Q Consensus 99 GFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~~k~~le~~k~kk~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (770)
|||.|.++....+|++.|+-..++|..|.++++..+-..- +..+. .....+-.|.++
T Consensus 76 gf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~~~n~-----------~k~~~------------~~~~~~~~f~p~ 132 (668)
T KOG2253|consen 76 GFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQTIENA-----------DKEKS------------IANKESHKFVPS 132 (668)
T ss_pred cccchhhHHHHHHHHHHhcccCCCcchhhccchhhhhcCc-----------ccccc------------chhhhhcccCCc
Confidence 9999999999999999999999999999998772211100 00000 001111112221
Q ss_pred Cc---------ccccCCCCCCCCCCCccccccchhhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCCCC
Q 004182 179 PE---------NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELP 249 (770)
Q Consensus 179 ~~---------~~~~gd~~~~~~~ev~~~~~~~~ed~~~d~~~~Eki~~~~eer~~~~~~~~~~~~~~~~~~~~~~~e~p 249 (770)
.+ ....++..+++++.+++-..++.....+|.-.++.+.+.+++......++.++.++... . .+
T Consensus 133 ~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~~~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~~~e~-----~--~~ 205 (668)
T KOG2253|consen 133 SSRRQESIQNKPLSLDEQIHKKSLQISSSAASRRQIAEADDHCLELEKTETESNSALSKEAESKKSPFED-----T--KD 205 (668)
T ss_pred hhHHHHHhhccccchhHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHhhcccccccCcccccccCchhh-----h--ch
Confidence 11 01111111222233333333333333444444455544444333221111111110000 0 00
Q ss_pred cccCCCCCchhhhcccccccccccccccccccCCCCCCCCCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004182 250 AKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERV 329 (770)
Q Consensus 250 ~~~rd~~~~~d~~k~~~~~~~~~~~~~~d~~~~e~er~~~~~~~rsr~r~rr~r~r~re~er~~ere~~r~~r~rerer~ 329 (770)
++ .+.+..+ . + .. +.++. ..+.++++.+++ .+...+.|...+.+++.+.....+..
T Consensus 206 s~--~~~s~td-------------s--~-~~--~d~~~-~~s~~~n~~rd~---sr~~~r~R~~~r~Re~~e~~ed~~~~ 261 (668)
T KOG2253|consen 206 SK--RSFSSTD-------------S--G-SE--SDSAE-VNSSSLNYCRDR---SRFDRRSRNDRRIRERLEKNEDSDEY 261 (668)
T ss_pred hh--hhhcccC-------------c--c-cc--chhhh-hcccccccchhh---ccchhhhHHHHHHHHHhhhccchHHH
Confidence 00 0000000 0 0 00 00000 001111111111 11111111111111111111122445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhcccchhhhhhhhhhHHHH
Q 004182 330 RKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLE 403 (770)
Q Consensus 330 r~~r~~~~~~re~E~~y~er~r~we~RER~r~~~r~~ekerere~e------r~r~~e~l~d~dddrdd~rk~~r~~~~~ 403 (770)
++.|...++..++|.||+.||+.|+.||+.+++.+++|+.+|+++. ++++++|++||||++|+ .+||++++|.
T Consensus 262 re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~ 340 (668)
T KOG2253|consen 262 REDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQ 340 (668)
T ss_pred HHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHH
Confidence 6668888899999999999999999999998555444444444432 36899999999999997 6999999999
Q ss_pred HHHHHHHhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCc----cchhhhhccCCcccCCCCCC
Q 004182 404 EKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSL----AEESAVESKGMDVEHDYHDD 479 (770)
Q Consensus 404 ~R~r~r~rE~e~D~~DR~rE~eE~~e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 479 (770)
.|++++.+|+|+|.+||.+|++|++|+|++..++..+.....+...+......... .+...++.........+.+.
T Consensus 341 ~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e 420 (668)
T KOG2253|consen 341 ERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGE 420 (668)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHh
Confidence 99999999999999999999999999999988776443332223222222111111 12333334443334444444
Q ss_pred cccccCCCCCCCCCCCCCCCCCCcccccccccCCCCccccccCcccCCCCccccCccCCCCCCcchhcccCCCCcccCCC
Q 004182 480 SIRENHMADPSSQNGNGDESTNVPIAASDMRQSGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDY 559 (770)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y 559 (770)
+++..|+... ..+..+-.+ +.+-....-..+|...+.+++++++.+...+.+|-.-+...++....+..++||.|
T Consensus 421 ~a~~~~~~~e-ee~~s~r~~----~~~d~~~~i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~ 495 (668)
T KOG2253|consen 421 SANQEHSNDE-EEIKSQRDD----YKPDENDHISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILA 495 (668)
T ss_pred hhhhccccch-hhcccchhh----hhhhhhhhhhcCchhhhhhhccCCCCCCcccccccccccCcchhhhcccccccccc
Confidence 5543333221 111111000 00000112345777788889999999889998888655544456666788999998
Q ss_pred ChHHHhhhcCCCCCCCCCchHHHHHHHHHhhcccchhhhchHHHHhhhhhccccchhhhccccccccchhhhhhhhhhcc
Q 004182 560 STEELQAAQPHVSGANPPNLAAAAEFAKRISNVNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRDEHKEKILDR 639 (770)
Q Consensus 560 ~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 639 (770)
+.....+ .|+.++++..++. -+-.|+. .+...++|.+-...+ ++++.+.
T Consensus 496 ~~~~q~~-----~g~sa~~~~i~~k---k~~~~~v----------------------~~~~~d~Dk~v~~~k-k~vp~dy 544 (668)
T KOG2253|consen 496 SIQNQDE-----IGPSASPIPIAKK---KLPETGV----------------------FREDDDEDKNVHEKK-KLVPLDY 544 (668)
T ss_pred ccccccc-----ccCCCCccccccc---cCCCccc----------------------ccccCCcccccchhh-hcccccC
Confidence 7633222 2222222111111 0001100 001112322222333 7777776
Q ss_pred ccccccccccccCchhhhhhhHHhhhhcCCCCchhhhcccccccccchhhHhhhhhhhHHHHHHHhhCCchhHHHHHHHH
Q 004182 640 DRDREHGLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVS 719 (770)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~~k~~lf~~~i~w~~~d~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~ 719 (770)
+++..- ..++.+.+ .|.+++++||.+||++|++||+|+|+|+.||.-+|+.+|+|||+|||+||||++|++||||||+
T Consensus 545 d~n~~~-~~~~~~nd-eK~~~~ksLI~tIP~~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s 622 (668)
T KOG2253|consen 545 DRNQAR-AHSGESND-EKRKRIKSLIETIPTEKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICS 622 (668)
T ss_pred Chhhcc-cccCCcch-hHHHHHHhhcccCCcchHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 664211 11222222 3456899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004182 720 STQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGLA 765 (770)
Q Consensus 720 ~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWr~life~~~~~~gl~ 765 (770)
+|..|.+|++||.+|.++||++|++||+|||||||||+.+++.||+
T Consensus 623 ~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWRlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 623 NIRQHSSPQQILDDLAMILDEDAEVFVVKMWRLLIYELGARKLGLT 668 (668)
T ss_pred HHHhcCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhccCC
Confidence 9999999999999999999999999999999999999999999985
No 2
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.75 E-value=7e-19 Score=153.01 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.2
Q ss_pred hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCC-----ChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 004182 692 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 759 (770)
Q Consensus 692 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~p~~l~~~l~~~lde~a~~fv~~lWr~life~~~ 759 (770)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++|||.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999877 9999999999999999999999999999988754
No 3
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=1.6e-17 Score=143.37 Aligned_cols=70 Identities=43% Similarity=0.726 Sum_probs=67.0
Q ss_pred hHhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004182 689 ELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 758 (770)
Q Consensus 689 ~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWr~life~~ 758 (770)
+..++|+|||+++|++|||++|++||+||+++|+.|.+|+.++..|..+++.+|+.||.+||++|||++.
T Consensus 4 v~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 4 LKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 4468899999999999999999999999999999999999999999999999999999999999999875
No 4
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=9.8e-18 Score=172.56 Aligned_cols=89 Identities=21% Similarity=0.524 Sum_probs=74.7
Q ss_pred hhhhcccccccccchhhHhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhc--CCChHHHHHHHHHhhh-HHHHHHHHHH
Q 004182 673 EELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLKM 749 (770)
Q Consensus 673 ~~lf~~~i~w~~~d~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~p~~l~~~l~~~ld-e~a~~fv~~l 749 (770)
.+-+...||+..|+ .+.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|+|||. .+|..||.+|
T Consensus 28 ~~~lekkVDmsKvn----leVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeL 103 (354)
T KOG2146|consen 28 PACLEKKVDMSKVN----LEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGEL 103 (354)
T ss_pred HHHHhhhcchhhcc----hhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHHH
Confidence 34455555555552 367899999999999999999999999999976 6799999999999999 9999999999
Q ss_pred HHHHHHHHHhhhhccc
Q 004182 750 WRMLIFEIKKVETGLA 765 (770)
Q Consensus 750 Wr~life~~~~~~gl~ 765 (770)
|-|||-+.-+.+.||.
T Consensus 104 W~LliS~a~~s~~giP 119 (354)
T KOG2146|consen 104 WSLLISEASQSQYGIP 119 (354)
T ss_pred HHHHHhhccccccCCc
Confidence 9999986656555553
No 5
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.53 E-value=1e-12 Score=145.60 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.-.++|||.+|+..+...+|+.||++||.|+..+|+++..+...+|||||++.+..+|.+||.+||..+|+|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999878888999999999999999999999999999999999744
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 3
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.47 E-value=4.6e-13 Score=130.08 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|..||.|.++.++.++.+|+++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34477999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=3.8e-13 Score=147.39 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
...+|||+|||+.+++++|..+|+.||.|.+++|+.++.||.++|||||.|.+.++|..||..|||..|+|+.|.|.|..
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 35589999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 348 ~ 348 (352)
T TIGR01661 348 N 348 (352)
T ss_pred C
Confidence 4
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.7e-13 Score=127.49 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
-..+||||||||++.++++.|.+||+.||.|..+.+-.|+.+..++|||||+|.+.++|..||+.|+|+.|+.+.|.|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 876
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=7.5e-12 Score=137.90 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|..||.|.+|+|+.+..+|+++|||||+|.+.++|..||..||+..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6.8e-12 Score=128.09 Aligned_cols=85 Identities=22% Similarity=0.326 Sum_probs=80.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
..-...++|-|.|||.++++.+|.+||.+||.|.++.++.|..||.++|||||+|.+.+.|.+||..|||+.++.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+.+
T Consensus 264 EwskP 268 (270)
T KOG0122|consen 264 EWSKP 268 (270)
T ss_pred EecCC
Confidence 99875
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.34 E-value=5.2e-12 Score=105.26 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
|||+|||..+++.+|+.+|+.||.|..+.+..+ .++.+.+||||.|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.33 E-value=4.9e-12 Score=138.65 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||+.+++.+|+.+|+.||.|.+++++.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.2e-11 Score=129.28 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=79.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.+||||+-|++.+++..|+..|..||.|..+.||.+..||+++|||||+|.+..+..+|....+|+.|+|+.|.|+
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
|...
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 7654
No 14
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=5.1e-11 Score=125.95 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
......|||+||||...+.+|+.+|.+||.|.++.|+.+ ...++|||||+|+++.+|.+|-..|||..|.|++|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 345689999999999999999999999999999999997 678899999999999999999999999999999999998
Q ss_pred ehhh
Q 004182 131 DQAT 134 (770)
Q Consensus 131 a~~~ 134 (770)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7664
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=8.2e-11 Score=120.78 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.....|||-||++.+.+..|.++|+.||.|..+++++|..|.+++|||||++.+.++|..||..|||+.++++.|.|.|-
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34788999999999999999999999999999999999988999999999999999999999999999999999999875
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 4
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.20 E-value=7.1e-11 Score=137.43 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+||++.+++++|+.+|+.||.|.+++++.++.+|+++|||||+|.+.++|..||..||++.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.20 E-value=1.5e-10 Score=133.47 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||||||+.+++++|..+|..||.|..+.++.+..+|.++|||||+|.+...|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 54
No 18
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.5e-11 Score=126.58 Aligned_cols=86 Identities=15% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 47 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 47 ~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
.....+..|+|||-.||...++.+|.++|-.||.|++.++.-|+.|..++|||||.|.++.++..||..|||+.|+.++|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeh
Q 004182 127 MLKVDQ 132 (770)
Q Consensus 127 ~V~~a~ 132 (770)
+|.+-.
T Consensus 358 KVQLKR 363 (371)
T KOG0146|consen 358 KVQLKR 363 (371)
T ss_pred hhhhcC
Confidence 986543
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.17 E-value=6.3e-11 Score=137.83 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...|+|||||||+.+++++|+.+|..||.|.++.++.++.+|+++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999974
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.5e-10 Score=97.56 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
|||+|||++++..+|..+|+.||.|..+.+..+.. |.++|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999854 99999999999999999999999999999999874
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.16 E-value=1.2e-10 Score=121.93 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
.++|||||||+.+++.+|+.+|+.||.|.++.|+.+. .++|||||+|.+..+|..||. |||..|+|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 356999999999999999996 999999999999987653
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.15 E-value=1.7e-10 Score=126.72 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCH--HHHHHHHHHhCCceecCeEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~--esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
....+||||||++.+++++|..+|..||.|.++.|++ .+| +|||||+|... .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4467899999999999999999999999999999994 477 99999999987 68999999999999999999997
Q ss_pred EehhhHHHHHHHHHhhh
Q 004182 130 VDQATREYLERYVDKKT 146 (770)
Q Consensus 130 ~a~~~k~~le~~k~kk~ 146 (770)
-+. ..||..++..++
T Consensus 84 KAK--P~YLeRLkrERe 98 (759)
T PLN03213 84 KAK--EHYLARLKREWE 98 (759)
T ss_pred ecc--HHHHHHHHHHHH
Confidence 654 568877765443
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.7e-10 Score=126.12 Aligned_cols=93 Identities=25% Similarity=0.404 Sum_probs=83.1
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-Ce
Q 004182 46 TVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 124 (770)
Q Consensus 46 ~~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr 124 (770)
+..+..+..|.||||.||.++.+++|.-||.+.|.|-.++++.|+.+|.++||+||+|++.+.|..||..||+++|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 33344466899999999999999999999999999999999999999999999999999999999999999999996 99
Q ss_pred EEEEEEehh-hHHHH
Q 004182 125 ELMLKVDQA-TREYL 138 (770)
Q Consensus 125 ~L~V~~a~~-~k~~l 138 (770)
.|.|+++.. ++-|+
T Consensus 155 ~igvc~Svan~RLFi 169 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFI 169 (506)
T ss_pred EeEEEEeeecceeEe
Confidence 999998754 34444
No 24
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=7.2e-11 Score=120.32 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
+..-+.||||+|++.+..+.|+.+|..||.|....|+.|+.+|+++|||||+|.+.++|.+|+. -..-.|+|++-.+++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 4456889999999999999999999999999999999999999999999999999999999998 345678999988876
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 54
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=2.4e-10 Score=117.35 Aligned_cols=88 Identities=16% Similarity=0.346 Sum_probs=83.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|.|..||.++|.++|+.+|+..|.|.+|++++|+.+|.+.|||||.|.++.+|.+||..|||+.|..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHH
Q 004182 131 DQATREYL 138 (770)
Q Consensus 131 a~~~k~~l 138 (770)
+.++...+
T Consensus 118 ARPSs~~I 125 (360)
T KOG0145|consen 118 ARPSSDSI 125 (360)
T ss_pred ccCChhhh
Confidence 99887666
No 26
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=8.9e-12 Score=122.24 Aligned_cols=81 Identities=21% Similarity=0.340 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..+.-|||||||+..|+.+|.-+|+.||.|+.+.+++|..||+++||||..|++..++.-||..|||+.|.|+.|+|+-.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.12 E-value=2.4e-10 Score=130.07 Aligned_cols=81 Identities=26% Similarity=0.479 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.+++.+|..+|..||.|..+.++.+..+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998889999999999999999999999999999999999999976
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=4.6e-10 Score=92.10 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
+|||+|||..++..+|..+|..||.|..+.+..+. +.+.|+|||+|.+...|..|+..|+|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998874 888999999999999999999999999999999887
No 29
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=130.92 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehhh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~~ 134 (770)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.+..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 004182 135 RE 136 (770)
Q Consensus 135 k~ 136 (770)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.11 E-value=2.4e-10 Score=126.05 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC--eEEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G--r~L~V~~ 130 (770)
..++|||+|||..+++++|+++|+.||.|..+.|+.+..+|+++|||||+|.+.++|..||..||+..|.+ +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999999999998899999999999999999999999999998875 7888888
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 765
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.06 E-value=7.4e-10 Score=129.59 Aligned_cols=84 Identities=23% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+||+..+++++|+.+|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34678999999999999999999999999999999999 79999999999999999999999999999999999999998
Q ss_pred hhhHH
Q 004182 132 QATRE 136 (770)
Q Consensus 132 ~~~k~ 136 (770)
.....
T Consensus 362 ~~k~~ 366 (562)
T TIGR01628 362 QRKEQ 366 (562)
T ss_pred cCcHH
Confidence 86543
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.4e-10 Score=110.79 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
-.+.||||||+..++..+|..+|..||.|.++-|... +.||+||+|+++.+|..|+..|+|..|+|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999998766553 56999999999999999999999999999999998765
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.06 E-value=5.4e-10 Score=129.83 Aligned_cols=80 Identities=24% Similarity=0.408 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-CeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr~L~V~~ 130 (770)
...|+|||+|||..+++++|..+|..||.|..++|+.| .+|.++|||||+|.+.++|..||..||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34699999999999999999999999999999999999 89999999999999999999999999999985 77777765
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 53
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=6.9e-10 Score=113.33 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=76.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
.++|||||||..+++.+|..+|..||.|..+.+..+..+|.++|||||.|.+.+.+..|+..|+|..|+|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999998654
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=6.5e-10 Score=130.05 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=74.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+|||||||+++++.+|..+|+.||.|.+++|+.+..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999998889999999999999999999999999999999999999875
No 36
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.04 E-value=2.1e-09 Score=123.71 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.++.++|||+||++ .++++.|..+|+.||.|.+++++.+ .+|||||+|.+..+|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 6999999999999999999999886 25899999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8754
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.04 E-value=9e-10 Score=113.95 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..+||||+||++.+++.+|+++|+.||.|..+.++.+ +...|||||+|.++..+..||. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999995 99999999999986543
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.03 E-value=1e-09 Score=124.82 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||..+++.+|..+|+.||.|..+.++.+..+|+++|||||+|.+.++|..||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4557899999999999999999999999999999999998899999999999999999999997 999999999999986
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 54
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=1.3e-09 Score=88.93 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 59 VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|||||.|.+.+.|..|+..|++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999887
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.02 E-value=5.3e-10 Score=111.82 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.-++|.|-||.+.++.++|..+|.+||.|..+.|.+|+.|+.++||+||-|....+|+.||..|+|..|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 5
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=6.9e-10 Score=114.89 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.....||||-|+..++.+.|++.|.+||.|..++|++|..|+|++|||||.|.+..+|++||..|||..|+++.|+.+|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 33678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhH
Q 004182 132 QATR 135 (770)
Q Consensus 132 ~~~k 135 (770)
....
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 7543
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.98 E-value=6.3e-10 Score=109.57 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
....|||||||+..+++..|.++|-.+|+|+.+++..++.+.+++|||||+|.+.++|.=||.+||.+.|-|++|+|+-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999744
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 3
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.8e-09 Score=111.82 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=73.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..+..|+||||||+..++++.|++.|+.||.|..+++..+. ||+||.|++.++|..||..+|+..|+|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 46778999999999999999999999999999999998874 999999999999999999999999999999998
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
|-..
T Consensus 234 WGKe 237 (321)
T KOG0148|consen 234 WGKE 237 (321)
T ss_pred cccc
Confidence 8654
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4.1e-10 Score=113.39 Aligned_cols=83 Identities=22% Similarity=0.389 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...+|||||+|...+++.-|...|-+||.|..+.++.|-.+++++|||||+|...++|.+||..||+.+|.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 764
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=4.8e-10 Score=119.50 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
-|.||||.|++.+.++.|+..|..||+|+++.+.+|+.||+++||+||+|+-++.|.-|+..|||..++|+.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999753
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=6.5e-09 Score=85.65 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
+|||+|||..++..+|..+|..||.|..+.+..++ .+.+.|+|||.|.+.+.|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999998874 447889999999999999999999999999999999863
No 47
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.6e-09 Score=101.96 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
+.....|||.++...+++++|...|.-||.|+.+.+..|+.||..+||++|+|.+...|+.||..|||..|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
|--
T Consensus 149 ~Fv 151 (170)
T KOG0130|consen 149 CFV 151 (170)
T ss_pred EEe
Confidence 853
No 48
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=1e-08 Score=92.75 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=73.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
...|||.|||+.+|.+++-+||+.||.|..+++.- +...+|-+||.|++..+|.+|+..|+|+.++++.|.|-+-..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 57899999999999999999999999999998854 456789999999999999999999999999999999998777
Q ss_pred hHHHH
Q 004182 134 TREYL 138 (770)
Q Consensus 134 ~k~~l 138 (770)
...+.
T Consensus 95 ~~~~~ 99 (124)
T KOG0114|consen 95 EDAFK 99 (124)
T ss_pred HHHHH
Confidence 54443
No 49
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.92 E-value=6.3e-09 Score=119.96 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=61.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcC------------CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G------------~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln 117 (770)
.....++|||||||+.+++.+|..+|..|+ .|..+. .++.+|||||+|.+.++|..||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 455678999999999999999999999752 233332 24557999999999999999995 99
Q ss_pred CceecCeEEEEE
Q 004182 118 KFNIDGQELMLK 129 (770)
Q Consensus 118 g~~I~Gr~L~V~ 129 (770)
|+.|.|+.|.|.
T Consensus 244 g~~~~g~~l~v~ 255 (509)
T TIGR01642 244 SIIYSNVFLKIR 255 (509)
T ss_pred CeEeeCceeEec
Confidence 999999999985
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=4.1e-09 Score=114.94 Aligned_cols=89 Identities=20% Similarity=0.295 Sum_probs=79.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee---cCeEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQEL 126 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I---~Gr~L 126 (770)
++.....+|||.||..+++.+|+.+|..||.|.+|.+++|+.||.++|||||.|.+.++|..|+.+||.... +...|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 345677899999999999999999999999999999999999999999999999999999999999988643 35789
Q ss_pred EEEEehhhHHHH
Q 004182 127 MLKVDQATREYL 138 (770)
Q Consensus 127 ~V~~a~~~k~~l 138 (770)
.|++++..+..+
T Consensus 110 qvk~Ad~E~er~ 121 (510)
T KOG0144|consen 110 QVKYADGERERI 121 (510)
T ss_pred eecccchhhhcc
Confidence 999988765544
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.7e-09 Score=113.70 Aligned_cols=87 Identities=18% Similarity=0.339 Sum_probs=82.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..+|-+.|||..|++-+++++|.-||+.||.|.+|.|++|..||.+..|+||+|.+.+++..|...|+++.|+.+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EehhhHH
Q 004182 130 VDQATRE 136 (770)
Q Consensus 130 ~a~~~k~ 136 (770)
|+++..+
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9988655
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=5.5e-09 Score=116.65 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=79.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+...|.|.|||+.|...+|+.+|+.||.|..+.|++. ..|+.||||||.|.....|..||..|||..|+|++|.|+|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3678999999999999999999999999999999976 688888999999999999999999999999999999999998
Q ss_pred hhHHHHH
Q 004182 133 ATREYLE 139 (770)
Q Consensus 133 ~~k~~le 139 (770)
....|-.
T Consensus 195 ~Kd~ye~ 201 (678)
T KOG0127|consen 195 DKDTYED 201 (678)
T ss_pred ccccccc
Confidence 7766654
No 53
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=100.95 Aligned_cols=81 Identities=17% Similarity=0.331 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||||||..+.+.+|..||.+||.|..+.+-.. ..+.+||||+|+++.+|..||..-+|+.++|..|.|.+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 345789999999999999999999999999999887432 34568999999999999999999999999999999998
Q ss_pred ehhh
Q 004182 131 DQAT 134 (770)
Q Consensus 131 a~~~ 134 (770)
...-
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 7653
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.76 E-value=2.6e-08 Score=114.80 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh--CCceecCeEEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 130 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L--ng~~I~Gr~L~V~~ 130 (770)
++++|||+|||+.+++.+|..+|..||.|.++.++.+ ++||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999864 479999999999999999864 78999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.75 E-value=9.8e-09 Score=115.23 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=73.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.||||||.+++++.+|+.+|..||.|..+.+..|..||.++||||++|.+.+.|..|+..|||++|-|+.|+|.+..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 39999999999999999999999999999999997799999999999999999999999999999999999997644
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.74 E-value=3.2e-08 Score=115.23 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~--G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...+|||+||+..+++++|+++|+.| |.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998764 5999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+.+
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 965
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=3.8e-08 Score=110.08 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh-----CC-ceecCeEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 126 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L-----ng-~~I~Gr~L 126 (770)
-..||||.|||+.+++..|...|+.||.|.++.++.++.||.++|+|||.|.+...+..||.+- .| +.|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999999999999999999999999999999999866 34 78999999
Q ss_pred EEEEehhhH
Q 004182 127 MLKVDQATR 135 (770)
Q Consensus 127 ~V~~a~~~k 135 (770)
.|..+-..+
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 998876543
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=1.9e-08 Score=107.53 Aligned_cols=95 Identities=26% Similarity=0.467 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCC-------CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHH
Q 004182 38 VVRPVPLPTVTP-------AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 110 (770)
Q Consensus 38 ~~~p~~vp~~~~-------~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~ 110 (770)
+.+|.++|...+ .....+.|||..+.++.++.+|+.+|..||.|++|.+.+++..+.++||||++|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 346666666555 3455789999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhCCceecCeEEEEEEeh
Q 004182 111 RALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 111 ~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.||..||-+.|+|..|+|.-+-
T Consensus 267 eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHhhhcchhhcccceEeccccc
Confidence 9999999999999999997543
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=1.7e-08 Score=105.59 Aligned_cols=70 Identities=19% Similarity=0.407 Sum_probs=66.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..+||||||..++...|+.+|..||.|+.|.|+.+ ||||..++...+..||+.|||+.|+|..|.|.-+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 46999999999999999999999999999999986 99999999999999999999999999999997444
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=6.6e-08 Score=82.34 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.2
Q ss_pred HHHHHHHHh----hcCCeeEEE-EeccCCC--CCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 68 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 68 e~~Lr~lFs----~~G~V~s~k-iv~d~~t--Gk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
+++|..+|+ .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 357788888 999999995 6666555 899999999999999999999999999999999986
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.67 E-value=1.1e-07 Score=76.96 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.6
Q ss_pred HHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 71 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 71 Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
|..+|++||.|..+.+.... .+++||+|.+.++|..|+..|||..++|++|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987652 689999999999999999999999999999999985
No 62
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=4.6e-08 Score=106.97 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..+...++||++||....+.+|...|..||.|.+.++..|+.||-++|||||.|++..+|..||..|||+.|++++|+|.
T Consensus 420 eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQ 499 (510)
T KOG0144|consen 420 EGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQ 499 (510)
T ss_pred cCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Eeh
Q 004182 130 VDQ 132 (770)
Q Consensus 130 ~a~ 132 (770)
+..
T Consensus 500 lk~ 502 (510)
T KOG0144|consen 500 LKR 502 (510)
T ss_pred eee
Confidence 543
No 63
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=1.2e-07 Score=104.23 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
....|||.||+.++|++.|+.+|+.||.|..++.++| ||||.|.+.++|.+||..+||..|+|..|.|.++.
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3578999999999999999999999999999998877 99999999999999999999999999999999998
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
+.
T Consensus 330 P~ 331 (506)
T KOG0117|consen 330 PV 331 (506)
T ss_pred Ch
Confidence 74
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=1.9e-07 Score=94.02 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~-G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.....-+||+.||..+.+..|..+|..| |.|...++.++..||.++|||||+|++.+-|.-|-..||++.|+++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4445679999999999999999999988 677888888999999999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004182 130 VDQAT 134 (770)
Q Consensus 130 ~a~~~ 134 (770)
|=.+-
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87664
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.52 E-value=2.7e-07 Score=100.99 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...+.|||.|||+.+.+.+|+.||. +.|.|..|.+..| .+||++||+.|+|.+++.+++|+..||.+.+.|+.|.|+-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456699999999999999999997 7899999999999 7999999999999999999999999999999999999975
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 43
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.51 E-value=1.6e-07 Score=92.94 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||||.+.+++..|..+|+.||.+.. -++++++.||.++|||||.|.+.+.+.+||..+||..+++++++|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 34578999999999999999999999998765 46788888999999999999999999999999999999999999987
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+-
T Consensus 174 a~ 175 (203)
T KOG0131|consen 174 AF 175 (203)
T ss_pred EE
Confidence 75
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.49 E-value=1.1e-07 Score=99.67 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++||||||.+.++..+|+..|.+||.|..|+|+.+ |+||.|.-.++|..|++.|++.+|.|+.++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 557899999999999999999999999999999999986 999999999999999999999999999999988
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+.+
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 765
No 68
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.42 E-value=1.9e-06 Score=87.57 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEe-ccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec---CeEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQEL 126 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv-~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~---Gr~L 126 (770)
....+||||.+||.++-.-+|..+|..|-....+.+- +++...-++-+|||+|.+...|+.|+..|||+.|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3447899999999999999999999988655555443 33222234579999999999999999999999998 8999
Q ss_pred EEEEehhh
Q 004182 127 MLKVDQAT 134 (770)
Q Consensus 127 ~V~~a~~~ 134 (770)
++.++.+.
T Consensus 111 hiElAKSN 118 (284)
T KOG1457|consen 111 HIELAKSN 118 (284)
T ss_pred EeeehhcC
Confidence 99988764
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=6.4e-07 Score=99.82 Aligned_cols=79 Identities=24% Similarity=0.453 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..+..|||-||++.++...|..+|+.||.|++|++..+ .+| ++|| ||.|.+.++|..||..|||..+.|++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 33444999999999999999999999999999999998 466 9999 99999999999999999999999999999765
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 151 ~~ 152 (369)
T KOG0123|consen 151 ER 152 (369)
T ss_pred cc
Confidence 54
No 70
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.1e-06 Score=101.13 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccC---CCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~---~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
..+..++||||||++.+++.+|...|+.||+|.+++|++.+ .......||||.|-+..++.+|+..|+|..|.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 45667899999999999999999999999999999999875 234567899999999999999999999999999999
Q ss_pred EEEEehh
Q 004182 127 MLKVDQA 133 (770)
Q Consensus 127 ~V~~a~~ 133 (770)
++.|..+
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999854
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=6.2e-07 Score=93.01 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec---CeEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 129 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~---Gr~L~V~ 129 (770)
..+.||||-|...-++++++.+|..||.|.+|.+.+. ..|.++||+||.|.+..+|..||..|||-..+ ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 5789999999999999999999999999999999998 59999999999999999999999999997654 5789999
Q ss_pred EehhhHH
Q 004182 130 VDQATRE 136 (770)
Q Consensus 130 ~a~~~k~ 136 (770)
+++..++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9887544
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.36 E-value=1.2e-06 Score=94.01 Aligned_cols=83 Identities=24% Similarity=0.365 Sum_probs=74.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I 121 (770)
.....+.|||.|||..+|.+++..+|++||.|.+ |++..+ ..|+.+|=|.|.|...+++.-|+.+|++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3444667999999999999999999999998864 678888 5799999999999999999999999999999
Q ss_pred cCeEEEEEEehh
Q 004182 122 DGQELMLKVDQA 133 (770)
Q Consensus 122 ~Gr~L~V~~a~~ 133 (770)
.|+.|+|..|..
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999987764
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=7e-07 Score=103.07 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....+.|+|.|||+..+...++.||+.||.|.++.+..-...+.++|||||+|-++.+|.+|+.+|.++.|-|+.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 34468999999999999999999999999999999877545677899999999999999999999999999999999999
Q ss_pred ehhhHHHHHHHH
Q 004182 131 DQATREYLERYV 142 (770)
Q Consensus 131 a~~~k~~le~~k 142 (770)
+...-. ++...
T Consensus 690 A~~d~~-~e~~r 700 (725)
T KOG0110|consen 690 AKSDNT-MEALR 700 (725)
T ss_pred hccchH-HHHHH
Confidence 876433 44433
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.31 E-value=1.1e-06 Score=102.02 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
++|||||+|+.++++.+|..+|..||.|.++.++.. +|||||.+....+|.+||..|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999998765 49999999999999999999999999999999999875
No 75
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.31 E-value=1.5e-06 Score=88.80 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 54 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~----lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..||||.||+..+..++|+. ||+.||.|..+.... +.+.+|=|||.|.+...|..|+..|+|+.+-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999998888 999999999887653 78999999999999999999999999999999999999
Q ss_pred EehhhHHHHHH
Q 004182 130 VDQATREYLER 140 (770)
Q Consensus 130 ~a~~~k~~le~ 140 (770)
++....+.+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99887666643
No 76
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.30 E-value=9.9e-07 Score=91.23 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.....||+|-|.-.++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|+..|+|..++.+.|.+.-.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred hhhHHHHHHHH
Q 004182 132 QATREYLERYV 142 (770)
Q Consensus 132 ~~~k~~le~~k 142 (770)
......++..+
T Consensus 268 ~wkeRn~dvv~ 278 (290)
T KOG0226|consen 268 EWKERNLDVVK 278 (290)
T ss_pred hHHhhhhHHHh
Confidence 54444444433
No 77
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=2.4e-06 Score=91.75 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=70.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHH-HHhCCceecCeEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQELML 128 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL-~~Lng~~I~Gr~L~V 128 (770)
......|||||+|...+++.+|+..|.+||.|.++.++... +|+||+|.+..+|..|. ..++.+.|+|.+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45567899999999999999999999999999999987753 69999999999999666 677888999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|...
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.21 E-value=3e-06 Score=97.93 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCC----CCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tG----k~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.++|||.||++.++...|..+|...|.|.++.|..-+ .+ .+.|||||+|.++++|.+|+..|+|..|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887653 22 245999999999999999999999999999999999
Q ss_pred Eeh
Q 004182 130 VDQ 132 (770)
Q Consensus 130 ~a~ 132 (770)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 887
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.1e-06 Score=94.40 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=70.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehhh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~~ 134 (770)
..|||| +.+|+.+|.++|+.+|.|++++++.|. | +.|||||.|.++.+|.+||..||...|.|++|+|.|....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999995 4 9999999999999999999999999999999999998654
Q ss_pred HH
Q 004182 135 RE 136 (770)
Q Consensus 135 k~ 136 (770)
..
T Consensus 76 ~~ 77 (369)
T KOG0123|consen 76 PS 77 (369)
T ss_pred Cc
Confidence 33
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.19 E-value=7.6e-06 Score=92.07 Aligned_cols=76 Identities=26% Similarity=0.418 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+|||+|||++++...|..+|..||.|....|..-...++..|||||+|.+..++..||. -+-+.|++++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEE
Confidence 35669999999999999999999999999988765432235555999999999999999998 45889999999995
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.17 E-value=3.3e-06 Score=92.68 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.+..|+|||.|||+++|+..|+.-|..||.|..+.|+. +|+++| .|.|.+++.|.+|+.+|+|..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45689999999999999999999999999999998843 678877 8999999999999999999999999999976
Q ss_pred e
Q 004182 131 D 131 (770)
Q Consensus 131 a 131 (770)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.13 E-value=8.3e-06 Score=85.58 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|+|.||++.|++.+|+++|..||.+..+.+..+ .+|.+.|.|-|.|....+|.+||..|||+.++|+.|.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 445689999999999999999999999999999999888 5999999999999999999999999999999999999875
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 83
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.10 E-value=7.2e-06 Score=93.03 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=66.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee---cCeE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 125 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I---~Gr~ 125 (770)
....++.|||.||...+|...|+.+|+ .||.|... +.| +.+.+|||.|.+.++|...+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456688999999999999999999999 56666655 555 5678999999999999999999999976 5888
Q ss_pred EEEEEehh
Q 004182 126 LMLKVDQA 133 (770)
Q Consensus 126 L~V~~a~~ 133 (770)
|.+.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99888764
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.10 E-value=2.3e-06 Score=92.84 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++||||+|++.++++.|+..|..||.|..|.++.++.++.++|||||+|.++..+.++|. ..-..|+|+.|.+..+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 57899999999999999999999999999999999999999999999999999998888876 44456777777776554
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 4
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=4e-06 Score=95.46 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....+.+|||+||..+++..+.+++..||.+....++.+..+|.++||+||+|+++.-+..|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34467899999999999999999999999999999999988899999999999999999999999999999999999976
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 544
No 86
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.95 E-value=0.00021 Score=82.66 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=26.8
Q ss_pred CCccccCccCCCCCCcchhcccCCCCcccCCCChH
Q 004182 528 GKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 562 (770)
Q Consensus 528 ~kr~~v~~vf~~~ddee~~~~~~kr~LvPl~y~~e 562 (770)
.+.+.+.+||+.++|.|-+-..++ +||||+|+..
T Consensus 514 ~kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 514 KKKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred cccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 356789999999998875545544 9999999884
No 87
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.95 E-value=1.1e-05 Score=84.54 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+...|||||+.+.++...+...|..||.|..+.+..+...|.++||+||+|.+...+..|+. |+|..|.|..+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 35567899999999999999999999999999999999998888899999999999999999999 99999999999996
Q ss_pred Eeh
Q 004182 130 VDQ 132 (770)
Q Consensus 130 ~a~ 132 (770)
+-.
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 433
No 88
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=2e-05 Score=89.33 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
..+..+|+|-|||..|+.+.|..+|+.||.|..+.. +-...|.+||+|.|...|.+|+..|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 455789999999999999999999999999999543 445679999999999999999999999999988877
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.83 E-value=2.1e-05 Score=85.52 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
....||||+||+.+++.+++..|.+||.|..+.++.|..+..++|||||.|.+.+++..++. .+-..|+|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35689999999999999999999999999999999999999999999999999999998877 78889999999998766
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
+
T Consensus 175 p 175 (311)
T KOG4205|consen 175 P 175 (311)
T ss_pred c
Confidence 5
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.82 E-value=8.9e-06 Score=82.69 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
...||||+|+...|+++.|.++|-..|+|..+.|..+ ..++.+ |+||.|.+..++.-|+.++||..+-+..|.|.+--
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3689999999999999999999999999999999877 577777 99999999999999999999999999999987644
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=2.4e-05 Score=80.61 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=64.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
..||||+||+.+.+.+|..||..||.+..+.+.. |||||+|.+.-+|.-||..||+..|+|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4699999999999999999999999999887744 6999999999999999999999999998888877664
No 92
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.66 E-value=0.00034 Score=63.82 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec----CeEEEE
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 128 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~--G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~----Gr~L~V 128 (770)
+||.|.|||-..+..+|.+++..+ |..--+.++.|..++-+.|||||.|.++..+..-...+||..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999743 56666778888889999999999999999999999999999875 566677
Q ss_pred EEeh
Q 004182 129 KVDQ 132 (770)
Q Consensus 129 ~~a~ 132 (770)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7664
No 93
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.37 E-value=0.0016 Score=71.68 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=67.8
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 54 ~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.+.|.|.||.. .+|.+.|.-+|+.||.|.+++|..... --++|.|.+...|.-|+.+|+|..|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57888888875 689999999999999999999988632 579999999999999999999999999999998876
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 54
No 94
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.33 E-value=0.00069 Score=73.75 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
.....+|||-+||..++...|..+|.+||.|.. +.|.++..|+++++=|.|+|.++..|+.||..+++..++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445678999999999999999999999998753 457778899999999999999999999999999999999
Q ss_pred CeEEEEEEehhh
Q 004182 123 GQELMLKVDQAT 134 (770)
Q Consensus 123 Gr~L~V~~a~~~ 134 (770)
+..|+|.++...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 988888766543
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.23 E-value=0.00018 Score=81.68 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
+.+....|||+..|+..++.-+|..||+.+|.|..+.++.|..++.++|.|||+|++..++..||. |.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 346678999999999999999999999999999999999999999999999999999999999996 9999999999999
Q ss_pred EEehhhH
Q 004182 129 KVDQATR 135 (770)
Q Consensus 129 ~~a~~~k 135 (770)
....+-+
T Consensus 253 q~sEaek 259 (549)
T KOG0147|consen 253 QLSEAEK 259 (549)
T ss_pred cccHHHH
Confidence 8766543
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.20 E-value=0.0006 Score=69.88 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..+.||||.||.++|+++.|+.+|+.|.....+++... . .-+.+|+.|++.+.|..||..|.|..|-
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34679999999999999999999999977766666321 2 3358999999999999999999998763
No 97
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.00 E-value=0.0036 Score=72.84 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCCC-EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQT-KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~-tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.+.| -|-|.|.|+.++-++|.+||.-|-.+....+++....|++.|-|.|.|++.++|.+|..-|++..|..+++.|.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 677999999999999999999997655443334336899999999999999999999999999999999988753
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.98 E-value=0.0026 Score=56.25 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=48.7
Q ss_pred CEEEEcCCCCCCCHH----HHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 55 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 55 ~tVfVgNLp~~vte~----~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
+.|||.|||...... -|++|+..|| .|.++ . .+.|++.|.+.+.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---S-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---e-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988875 5667777887 56554 2 2789999999999999999999999999999999
Q ss_pred EehhhHHH
Q 004182 130 VDQATREY 137 (770)
Q Consensus 130 ~a~~~k~~ 137 (770)
+....+.+
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 87654433
No 99
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.84 E-value=0.0004 Score=75.93 Aligned_cols=64 Identities=14% Similarity=-0.019 Sum_probs=53.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..|+||++|+..+...++..+|..+|.|...++. .|....||.++|+...+...|+. ++|+.+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 4789999999999999999999999999877653 34455678899999999999988 6666653
No 100
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.83 E-value=0.002 Score=75.70 Aligned_cols=8 Identities=0% Similarity=-0.238 Sum_probs=3.7
Q ss_pred cCCCCCCC
Q 004182 60 GKIAPTAD 67 (770)
Q Consensus 60 gNLp~~vt 67 (770)
-.||++..
T Consensus 608 PvlP~gLk 615 (1102)
T KOG1924|consen 608 PVLPFGLK 615 (1102)
T ss_pred ccCCCCCC
Confidence 34555443
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.80 E-value=0.0028 Score=68.57 Aligned_cols=95 Identities=22% Similarity=0.302 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G--~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
......+|||||-+.+|+.+|.+.+...| .+..+++..++.+|.++||++|...+..++...+.+|....|+|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44467899999999999999999999887 5677788888899999999999999999999999999999999876555
Q ss_pred -EEehhhHHHHHHHHHhh
Q 004182 129 -KVDQATREYLERYVDKK 145 (770)
Q Consensus 129 -~~a~~~k~~le~~k~kk 145 (770)
.++......++...+|.
T Consensus 157 ~~~NK~~~ak~E~~~~K~ 174 (498)
T KOG4849|consen 157 LSYNKTNQAKLEDAQAKN 174 (498)
T ss_pred eccchhhHHHHHHHHhhh
Confidence 34444455555555444
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.77 E-value=0.0065 Score=56.28 Aligned_cols=85 Identities=19% Similarity=0.335 Sum_probs=52.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC-----CceecCeEEEEE
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 129 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln-----g~~I~Gr~L~V~ 129 (770)
+.|+|.+++..++-.+|+.+|+.||.|..+.+..+- .-|||-|.+++.|..|+..+. ++.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 678999999999999999999999999998886642 489999999999999997663 456777777776
Q ss_pred Eehh--hHHHHHHHHHhh
Q 004182 130 VDQA--TREYLERYVDKK 145 (770)
Q Consensus 130 ~a~~--~k~~le~~k~kk 145 (770)
+-.. -..|.++..+.+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 6443 466777766544
No 103
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.68 E-value=0.0011 Score=69.38 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=67.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCC--------CCCcc----eEEEEecCHHHHHHHHHHhCCce
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~t--------Gk~kG----fGFVeF~~~esA~~AL~~Lng~~ 120 (770)
..-.||+++||+.+...-|++||+.||.|-++.+.....+ |.+.+ =|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999887554322 33322 27899999999999999999999
Q ss_pred ecCeEEE-EEEehhhHHHHH
Q 004182 121 IDGQELM-LKVDQATREYLE 139 (770)
Q Consensus 121 I~Gr~L~-V~~a~~~k~~le 139 (770)
|+|++-. +..+-...+||-
T Consensus 153 Iggkk~S~~~~dlWNmKYLp 172 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLP 172 (278)
T ss_pred cCCCCCCchHHhhhhhhhcc
Confidence 9986643 333444555663
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.58 E-value=0.0099 Score=61.37 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-CeEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr~L~V 128 (770)
..++..++|+.|||..++...+..+|..|+....+.++... .+.+||+|.+...+..|...|.|+.|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 45678899999999999999999999999999999887642 379999999999999999999999887 677777
Q ss_pred EEeh
Q 004182 129 KVDQ 132 (770)
Q Consensus 129 ~~a~ 132 (770)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6553
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.54 E-value=0.0019 Score=69.86 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=71.8
Q ss_pred CCCEEE-EcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 53 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 53 ~~~tVf-VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
+..++| |+|+++.++.+.|...|..||.|..+++..++.+|.+.||+||.|........++.. +...+.+..+.|..+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 999999999999999999999999999999999999999999999999999999886 788899999998765
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 106
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0091 Score=68.27 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCCCCCCH------HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-Ce
Q 004182 52 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 124 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte------~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr 124 (770)
.-...|+|.|+|---.. .-|..+|+++|.++...+..+. .|+++||.|++|.+..+|..|+..|||..|+ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34567899999853222 3667899999999999998884 5669999999999999999999999999998 66
Q ss_pred EEEEEE
Q 004182 125 ELMLKV 130 (770)
Q Consensus 125 ~L~V~~ 130 (770)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777753
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.43 E-value=0.0087 Score=67.66 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
....-|-+.+||+++|..+|..+|+.|+ |..+.+.+ .+|++.|=+||+|.+.+++..||+ .+...++.+.|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3456677899999999999999999997 66655544 589999999999999999999998 7888888899988644
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 84 ~ 84 (510)
T KOG4211|consen 84 G 84 (510)
T ss_pred C
Confidence 3
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.30 E-value=0.051 Score=59.67 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 50 AEKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~-vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
...+.+-+.|-+|... +..+.|..+|..||.|..++++... .|-|.|++.+.....+||..||+..+-|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3556788999999875 5556999999999999999998862 268999999999999999999999999999999
Q ss_pred EEeh
Q 004182 129 KVDQ 132 (770)
Q Consensus 129 ~~a~ 132 (770)
.++.
T Consensus 358 ~~Sk 361 (494)
T KOG1456|consen 358 CVSK 361 (494)
T ss_pred eecc
Confidence 8765
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.014 Score=66.48 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=60.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHh-hcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHH
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs-~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~ 114 (770)
-.+..|||||+||..++..+|-.||. .||.|..+.|=+|+.=+.++|-|-|+|.+..+..+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35678999999999999999999999 89999999999998889999999999999999999997
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.06 E-value=0.013 Score=63.27 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=64.8
Q ss_pred CCEEEEcCCCCCCCHHH------HHHHHhhcCCeeEEEEeccC-CCCCCcc-eE-EEEecCHHHHHHHHHHhCCceecCe
Q 004182 54 QTKVYVGKIAPTADSDF------VLSVLKVCGTVKSWKRAQYP-SNGTPKG-FG-FCEFESAEGVLRALRLLNKFNIDGQ 124 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~------Lr~lFs~~G~V~s~kiv~d~-~tGk~kG-fG-FVeF~~~esA~~AL~~Lng~~I~Gr 124 (770)
..-|||-+||+.+..+. -.++|+.||.|..+.|-... ......+ +| ||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999888765 24799999999988765432 1111122 33 9999999999999999999999999
Q ss_pred EEEEEEehhhHHHHHHHH
Q 004182 125 ELMLKVDQATREYLERYV 142 (770)
Q Consensus 125 ~L~V~~a~~~k~~le~~k 142 (770)
.|+..+. +.+|--.|.
T Consensus 194 ~lkatYG--TTKYCtsYL 209 (480)
T COG5175 194 VLKATYG--TTKYCTSYL 209 (480)
T ss_pred eEeeecC--chHHHHHHH
Confidence 9998664 344554444
No 111
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.03 E-value=0.0048 Score=63.89 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
....+.++|-|++..+.+.+|..+|..+|.+..... ..+|+||.|....++.+||..|+|..+.++.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 455788999999999999999999999999844332 3379999999999999999999999999999999
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.86 E-value=0.0084 Score=66.70 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecc---CCC--CCC--------cceEEEEecCHHHH
Q 004182 43 PLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAEGV 109 (770)
Q Consensus 43 ~vp~~~~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d---~~t--Gk~--------kGfGFVeF~~~esA 109 (770)
++|......-+.+||.+-|||.+-.-+-|.+||+.||.|.+++|+.. +.+ |.+ +-|+||+|...+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 34444445567899999999999999999999999999999998876 322 222 45899999999999
Q ss_pred HHHHHHhCCce
Q 004182 110 LRALRLLNKFN 120 (770)
Q Consensus 110 ~~AL~~Lng~~ 120 (770)
.+|...|+...
T Consensus 300 ~KA~e~~~~e~ 310 (484)
T KOG1855|consen 300 RKARELLNPEQ 310 (484)
T ss_pred HHHHHhhchhh
Confidence 99999776543
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.70 E-value=0.049 Score=53.19 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCCCCEEEEcCCC-----C-CCCH---HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee
Q 004182 51 EKPQTKVYVGKIA-----P-TADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (770)
Q Consensus 51 ~~~~~tVfVgNLp-----~-~vte---~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I 121 (770)
+|+.-||.|.-+. . ...+ ..|.+.|..||.+.-++++.+ .-+|+|.+..+|++|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3445666665554 1 2332 267778889999888877654 78999999999999999 999999
Q ss_pred cCeEEEEEEeh
Q 004182 122 DGQELMLKVDQ 132 (770)
Q Consensus 122 ~Gr~L~V~~a~ 132 (770)
+|+.|.|.+-.
T Consensus 95 ~g~~l~i~LKt 105 (146)
T PF08952_consen 95 NGRTLKIRLKT 105 (146)
T ss_dssp TTEEEEEEE--
T ss_pred CCEEEEEEeCC
Confidence 99999997533
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=0.44 Score=56.83 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=4.6
Q ss_pred HHHHhhhCCCCC
Q 004182 219 MVEERLKTNPLP 230 (770)
Q Consensus 219 ~~eer~~~~~~~ 230 (770)
+|+-...+-++|
T Consensus 257 liema~sGq~lP 268 (1118)
T KOG1029|consen 257 LIEMAKSGQPLP 268 (1118)
T ss_pred HHHHHhcCCCCC
Confidence 344333344433
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.02 E-value=0.07 Score=60.59 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=62.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.+...|-+.+||+.|++.+|.+||+..-.|.. +.++.+ ..|++.|=+||.|++.+.|+.||. -|...|+.+.|.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 34567889999999999999999997654444 334555 478899999999999999999997 67778888888874
No 116
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.87 E-value=0.072 Score=58.16 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=64.3
Q ss_pred CCCCEEEEcCCCC----CCCH-------HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce
Q 004182 52 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 52 ~~~~tVfVgNLp~----~vte-------~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~ 120 (770)
...+||.|.||=. ..+. ++|..-+.+||.|.++.|.- .-+.|.+-|.|.+.+.|..||+.|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4468899998742 2232 35556678999999998753 2466899999999999999999999999
Q ss_pred ecCeEEEEEEehhhHHH
Q 004182 121 IDGQELMLKVDQATREY 137 (770)
Q Consensus 121 I~Gr~L~V~~a~~~k~~ 137 (770)
|+|++|...+.+..-.|
T Consensus 339 fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKTKF 355 (382)
T ss_pred ecceEEEEEEeCCccee
Confidence 99999999877764333
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.51 E-value=0.2 Score=46.18 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=52.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCC-------CCCCcceEEEEecCHHHHHHHHHHhCCceecCe-E
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS-------NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 125 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~-------tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr-~ 125 (770)
.+.|.|-+.|+. ....|...|+.||.|....-+.... ......+-.+.|.++.+|.+||. -||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456777788877 4467788899999998875221100 11234688999999999999999 899999875 5
Q ss_pred EEEEEehh
Q 004182 126 LMLKVDQA 133 (770)
Q Consensus 126 L~V~~a~~ 133 (770)
+-|.+++.
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777654
No 118
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.50 E-value=0.073 Score=59.18 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCe-EEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr-~L~V~~ 130 (770)
+++.+++..|||..+++++|+.+|...|..+...... ++.+.++++.+.+.++|..|+..+|...+++. -|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 5567999999999999999999999998776654433 35667999999999999999999999999854 899998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 765
No 119
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.40 E-value=0.072 Score=58.91 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=59.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCC---CCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~t---Gk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..|.|.||.+.++.+.|+.||+..|.|..+.++....+ ....-.|||.|.+..++..|-.+-|-+.|+--.|++-|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 37899999999999999999999999999988764322 233468999999999998887744444554444444444
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
+..
T Consensus 88 ~~~ 90 (479)
T KOG4676|consen 88 DEV 90 (479)
T ss_pred CCC
Confidence 443
No 120
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.37 E-value=0.19 Score=50.65 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=59.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
.-.....|.|.+||++.++.+|+..+...|.|+...+..| |+|.|+|...++..=||+.|....+.
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3445678999999999999999999999999999999988 79999999999999999988776554
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.19 E-value=0.2 Score=58.98 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
......|||-.||..++...+..+|...-.|.. +.+... -+++..+-|||.|..+..+..|+..-+.+.++.+.|.|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344678999999999999999999997776766 555555 488999999999999999999998888888999999996
Q ss_pred E
Q 004182 130 V 130 (770)
Q Consensus 130 ~ 130 (770)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 3
No 122
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.94 E-value=0.24 Score=54.10 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHH-HHHHHhCCceecCeEEEEEEehhhH
Q 004182 57 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL-RALRLLNKFNIDGQELMLKVDQATR 135 (770)
Q Consensus 57 VfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~-~AL~~Lng~~I~Gr~L~V~~a~~~k 135 (770)
+.|+.-.+.+++.++.+++.+.-.|.+..|.+. .++.+.| .|.++.+++ .||.++ +.-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lI-------KqSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLI-------KQSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHH-------HhhccccchHHH
Confidence 556666678999999999999988888777665 5666666 677766654 888876 456677788888
Q ss_pred HHHHHH
Q 004182 136 EYLERY 141 (770)
Q Consensus 136 ~~le~~ 141 (770)
.++..+
T Consensus 416 vLissL 421 (498)
T KOG4849|consen 416 VLISSL 421 (498)
T ss_pred HHHHHH
Confidence 877444
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.78 E-value=0.13 Score=62.01 Aligned_cols=82 Identities=11% Similarity=0.198 Sum_probs=69.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec--CeEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELM 127 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~--Gr~L~ 127 (770)
...+.+.+|||+|..++....|...|..||.|..+.+-. ...|++|.|++...+..|+..|-|+.|+ .+.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345578899999999999999999999999998876532 3369999999999999999999999998 47799
Q ss_pred EEEehhhHHH
Q 004182 128 LKVDQATREY 137 (770)
Q Consensus 128 V~~a~~~k~~ 137 (770)
|.|+...-.+
T Consensus 525 vdla~~~~~~ 534 (975)
T KOG0112|consen 525 VDLASPPGAT 534 (975)
T ss_pred cccccCCCCC
Confidence 9888754333
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.68 E-value=0.19 Score=58.20 Aligned_cols=64 Identities=20% Similarity=0.186 Sum_probs=52.3
Q ss_pred HHHHHHhhcCCeeEEEEecc-C--CCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 70 FVLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 70 ~Lr~lFs~~G~V~s~kiv~d-~--~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
+++.-+++||.|.+|.+.++ . ...-..|.-||+|.+.+++.+|+..|+|..++|+.+...|.+.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34444567999999998776 2 3344567789999999999999999999999999999988764
No 125
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.98 E-value=0.039 Score=66.11 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
...|||.|.|+..|.+.++.+|..+|.+++..+++. ..|+++|.+||.|.+..++.+++....+..+.-..+.|.+...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 467999999999999999999999999999998887 6999999999999999999999987877777777777766555
No 126
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.58 E-value=0.29 Score=39.76 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=40.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHH
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 113 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL 113 (770)
+.|-|.+.++...+ .+...|..||.|....+.. ...+.|+.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56778888876664 4555888999999987752 2369999999999999885
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.50 E-value=0.31 Score=53.90 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCC-eeE--EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s--~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...|-+.+||+..+-++|..+|.-|-. |.. ++++.+ ..|.+.|-+||.|.+.+.|..|....|.....++.|.|--
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 567889999999999999999998863 333 677777 6899999999999999999999988887777788887754
Q ss_pred e
Q 004182 131 D 131 (770)
Q Consensus 131 a 131 (770)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 3
No 128
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.74 Score=52.92 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeccC-CCCCCcc---eEEEEecCHHHHHHHHHHh
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLL 116 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V-~s~kiv~d~-~tGk~kG---fGFVeF~~~esA~~AL~~L 116 (770)
.-.+.||||+||+.+++..|...|..||.+ +.|-.-... .---++| |.|..|++..++..-|..+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 346889999999999999999999999975 345320110 0112244 9999999988887666544
No 129
>PTZ00121 MAEBL; Provisional
Probab=92.15 E-value=6.7 Score=50.36 Aligned_cols=7 Identities=14% Similarity=-0.069 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004182 108 GVLRALR 114 (770)
Q Consensus 108 sA~~AL~ 114 (770)
....|+.
T Consensus 945 ~f~eC~e 951 (2084)
T PTZ00121 945 KFGGCLE 951 (2084)
T ss_pred hHHHHHH
Confidence 3334443
No 130
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=92.13 E-value=0.83 Score=57.51 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.9
Q ss_pred CCCCchhhhcccccccccchh
Q 004182 668 IPKTKEELFSYEINWAVYDKH 688 (770)
Q Consensus 668 ip~~k~~lf~~~i~w~~~d~~ 688 (770)
|..-|..|+.-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 444555566555555555443
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.53 E-value=0.24 Score=55.39 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=59.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCc-eecCeEEEEEEeh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 132 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~-~I~Gr~L~V~~a~ 132 (770)
..+|||||++.++..+|..+|+..-. +..-.++.. ||+||.+.+...+..|+..|+|. ++.|+.+.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 46899999999999999999985421 111223333 89999999999999999999885 6889999997766
Q ss_pred hhHHHH
Q 004182 133 ATREYL 138 (770)
Q Consensus 133 ~~k~~l 138 (770)
..+...
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 544333
No 132
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.22 E-value=0.58 Score=50.30 Aligned_cols=64 Identities=22% Similarity=0.134 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCeeEEEEeccCCCCCC-cceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 69 DFVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 69 ~~Lr~lFs~~G~V~s~kiv~d~~tGk~-kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.+..-+.+||.|..|.|.-.+..... .---||+|+..++|..|+..|||..|+|+.+...|..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467778889999999988776532222 3357999999999999999999999999998887654
No 133
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.06 E-value=0.026 Score=67.48 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=59.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..+++||.||+..+...+|...|+.+|.+..+.+.....+|..+|+||+.|..+..+.+||....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3578999999999999999999999998877776655578999999999999999999999855555544
No 134
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=90.65 E-value=2.6 Score=53.30 Aligned_cols=7 Identities=29% Similarity=0.292 Sum_probs=3.1
Q ss_pred HHHHHhC
Q 004182 111 RALRLLN 117 (770)
Q Consensus 111 ~AL~~Ln 117 (770)
.||..||
T Consensus 129 ~ALaYLH 135 (1021)
T PTZ00266 129 HALAYCH 135 (1021)
T ss_pred HHHHHHH
Confidence 3444444
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=90.32 E-value=0.2 Score=60.62 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=65.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
....|||+|||...++...|+..|..+|.|..+.|-+. .-+....||||.|.+...+-.|+..+.+..|....+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34689999999999999999999999999999887554 34555679999999999999999888888877555555544
No 136
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.21 E-value=0.79 Score=50.74 Aligned_cols=74 Identities=23% Similarity=0.158 Sum_probs=61.2
Q ss_pred EcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec--CeEEEEEEehhhHH
Q 004182 59 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQATRE 136 (770)
Q Consensus 59 VgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~--Gr~L~V~~a~~~k~ 136 (770)
|-|--+.+|.+-|..|+..+|.|.++.|... +| --+.|+|++.+.|.+|-..|||..|- =..|+|.++.+++.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 4455568999999999999999999988763 33 45899999999999999999999874 47889998887644
Q ss_pred H
Q 004182 137 Y 137 (770)
Q Consensus 137 ~ 137 (770)
.
T Consensus 202 n 202 (494)
T KOG1456|consen 202 N 202 (494)
T ss_pred e
Confidence 3
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.07 E-value=0.31 Score=51.51 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=56.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln 117 (770)
..|||.||+..++.+.+..-|+.||.|....++.| ..|++.+=|+|.|...-.+..|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 67999999999999999999999999998887777 689999999999999999999998773
No 138
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.04 E-value=4.6 Score=43.87 Aligned_cols=62 Identities=24% Similarity=0.265 Sum_probs=47.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
=|-|-+.|+... ..|..+|.+||.|+.... +....|-+|-|.+...|.+||. .||..|+|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 344556665543 577788999999987643 3445799999999999999998 8999998644
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.62 E-value=0.21 Score=54.62 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=63.0
Q ss_pred CEEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeccCC--CC-CCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 55 TKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS--NG-TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr---~lFs~~G~V~s~kiv~d~~--tG-k~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
.-+||-+|+..+.+..+. ..|+.||.|..+.+..++. .+ .+.+-++|+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 568899999877666443 5788999999998877652 11 11223899999999999999999999999998665
Q ss_pred EEehhhHHHHHHHH
Q 004182 129 KVDQATREYLERYV 142 (770)
Q Consensus 129 ~~a~~~k~~le~~k 142 (770)
.+ .+.+|-..|+
T Consensus 158 ~~--gttkycs~~l 169 (327)
T KOG2068|consen 158 SL--GTTKYCSFYL 169 (327)
T ss_pred hh--CCCcchhHHh
Confidence 43 3344444444
No 140
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=86.72 E-value=1.1 Score=49.82 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhc----CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~----G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
....|-+.+||++++..++..+|... |....+-+++. .+|+..|-+||.|...+.|..||. -|...|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~i------- 230 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNI------- 230 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHH-------
Confidence 35567789999999999999999732 24445555665 489999999999999999999997 232222
Q ss_pred EEehhhHHHHHHHHHhh
Q 004182 129 KVDQATREYLERYVDKK 145 (770)
Q Consensus 129 ~~a~~~k~~le~~k~kk 145 (770)
-+.|++-|+...
T Consensus 231 -----GqRYIElFRSTa 242 (508)
T KOG1365|consen 231 -----GQRYIELFRSTA 242 (508)
T ss_pred -----hHHHHHHHHHhH
Confidence 256777776544
No 141
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.88 E-value=3.2 Score=40.60 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=55.8
Q ss_pred CCCCCEEEEcCCCCCCCH----HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 51 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte----~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
+++-.||.|.-|..++.. ..+...++.||+|.++...- +.-+.|.|.+..+|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 566778888877666554 35556678999999986532 25789999999999999999977 4557777
Q ss_pred EEEEeh
Q 004182 127 MLKVDQ 132 (770)
Q Consensus 127 ~V~~a~ 132 (770)
...|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 777754
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.05 E-value=2.4 Score=51.45 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=59.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec--CeEEEEEEeh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKVDQ 132 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~--Gr~L~V~~a~ 132 (770)
.+.++-|.+-+.+...|..+|..||.|.+....++- ..+.|+|...++|..|+.+|+|..+- |-+.+|.++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445555666678888999999999999887666652 58999999999999999999998754 7777887766
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 373 ~~ 374 (1007)
T KOG4574|consen 373 TL 374 (1007)
T ss_pred cc
Confidence 43
No 143
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.13 E-value=65 Score=34.86 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHHhhcCCeeEEEEe
Q 004182 51 EKPQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRA 87 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~------------vte~~Lr~lFs~~G~V~s~kiv 87 (770)
+..+.|||+.+||-. -++.-|...|..||.|..+.|+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 344678888888853 3456899999999999888764
No 144
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.47 E-value=3.8 Score=41.84 Aligned_cols=60 Identities=18% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC--CceecCeEEEEEEehh
Q 004182 68 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQA 133 (770)
Q Consensus 68 e~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln--g~~I~Gr~L~V~~a~~ 133 (770)
...|+.+|..|+.+..|..... -+-..|.|.+...|..|...|+ +..++|..|+|.++..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3689999999999999987764 2457899999999999999999 9999999999988754
No 145
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.28 E-value=6.5 Score=33.21 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=43.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhc---CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~---G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L 116 (770)
+..|+|.|+. .++..+|+.+|..| .....+..+-| .-|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 4679999985 68889999999988 13456777777 36778999999999999764
No 146
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=80.25 E-value=2.2 Score=43.21 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEec---cCCCCC--CcceEEEEecCHHHHHHHHHHhCCceec---
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID--- 122 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~-~G~V~s~kiv~---d~~tGk--~kGfGFVeF~~~esA~~AL~~Lng~~I~--- 122 (770)
...+.|.|.+||+++|++.+...++. +|....|..+. +..+.+ ..+-|||.|.+.+.+..-+..++|+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34678999999999999999987776 66664454333 111212 2356899999999999999999997663
Q ss_pred C--eEEEEEEehh
Q 004182 123 G--QELMLKVDQA 133 (770)
Q Consensus 123 G--r~L~V~~a~~ 133 (770)
| ....|.++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2 3455666665
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=77.18 E-value=4.7 Score=46.95 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=55.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhh----------------------------cCCeeEEEEeccCCCCCCcceEEEEecC
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKV----------------------------CGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~----------------------------~G~V~s~kiv~d~~tGk~kGfGFVeF~~ 105 (770)
.+++-|+||+..-+..+|..|+.. .|.---+.++.|-.+....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 456677777766666566655542 2333344566665677788999999999
Q ss_pred HHHHHHHHHHhCCceec----CeEEEEEEeh
Q 004182 106 AEGVLRALRLLNKFNID----GQELMLKVDQ 132 (770)
Q Consensus 106 ~esA~~AL~~Lng~~I~----Gr~L~V~~a~ 132 (770)
++.+..+..++||..+. .+...+.||.
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999999998654 4455566654
No 148
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=77.15 E-value=3.5 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHH
Q 004182 726 KASQMLELLQTILDDEAEMFVLKM 749 (770)
Q Consensus 726 ~p~~l~~~l~~~lde~a~~fv~~l 749 (770)
.-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 149
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.74 E-value=2.6 Score=52.50 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=25.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEE
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKR 86 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~ki 86 (770)
..+++|--+-..+..+.|+.+.+.||...+...
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~ 104 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLT 104 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhh
Confidence 456777777778888999999999997766544
No 150
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=75.07 E-value=1.8 Score=46.01 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=47.4
Q ss_pred hcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 77 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 77 ~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
+||.|..+.|..+ ..--..|-.||.|...++|.+|+..||+-.+.|++|...+..-
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 8999999877665 2334567889999999999999999999999999999877653
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=73.95 E-value=2.5 Score=46.04 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...+++|||++...+....+..++..+|.+..+.+........+++|+++.|.....+..||.......+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45789999999999999989999999998888777665568899999999999999999999844444555555554443
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 166 ~ 166 (285)
T KOG4210|consen 166 T 166 (285)
T ss_pred c
Confidence 3
No 152
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=73.05 E-value=2.5 Score=48.28 Aligned_cols=74 Identities=7% Similarity=0.004 Sum_probs=59.0
Q ss_pred CCEEEEcCCCCCCCH-HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 54 QTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 54 ~~tVfVgNLp~~vte-~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.+.+-+.-++++... ..|...|..||.|..|.+-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 445555556666655 489999999999999877443 3578999999999977776 89999999999999977
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 54
No 153
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=71.74 E-value=19 Score=33.06 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=55.8
Q ss_pred HhhhhhhhHHHHHHHhhCCchh--HHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 004182 690 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 763 (770)
Q Consensus 690 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWr~life~~~~~~g 763 (770)
+.+-||--|.+|...+=.+-|+ .+-+||+=++....++..++.+|...+|.=...++...-....|...+.+.|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899998888566555 4889999999999999999999999999777777777777777777777665
No 154
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.26 E-value=20 Score=30.84 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=37.8
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhcCC-----eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 56 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 56 tVfVg-NLp~~vte~~Lr~lFs~~G~-----V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
++||. +--..++...|..+|...+. |-.+.+.. .|.||+-... .+..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 22346777788888876643 44555544 4899988754 7888999999999999999997
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 54
No 155
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=70.08 E-value=34 Score=32.19 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=45.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
.+-+...|..++.++|..+...+- .|..++++++ ..-++-...+.|.+...|..-...+||..++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 333444555555566766555553 5667788776 2235667899999999999999999999775
No 156
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=68.48 E-value=16 Score=32.88 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=40.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCC
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 118 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng 118 (770)
+..||+ .|...-..+|.++|+.||.|. +..+.+ .-|||...+.+.+..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 445555 888999999999999999763 444555 4799999999999999988853
No 157
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=62.47 E-value=19 Score=43.73 Aligned_cols=6 Identities=33% Similarity=1.132 Sum_probs=2.6
Q ss_pred HHHhhC
Q 004182 702 ITEFLG 707 (770)
Q Consensus 702 i~e~lG 707 (770)
+++|+|
T Consensus 699 ~~~y~G 704 (830)
T KOG1923|consen 699 VVEYFG 704 (830)
T ss_pred HhHhhC
Confidence 344444
No 158
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=61.15 E-value=2.9e+02 Score=33.61 Aligned_cols=11 Identities=18% Similarity=-0.124 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q 004182 104 ESAEGVLRALR 114 (770)
Q Consensus 104 ~~~esA~~AL~ 114 (770)
.+...++.|+.
T Consensus 80 ~n~~~~L~ae~ 90 (811)
T KOG4364|consen 80 LNSMVALLAEE 90 (811)
T ss_pred cccccchhhhh
Confidence 34444444443
No 159
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=60.18 E-value=2.6e+02 Score=34.05 Aligned_cols=6 Identities=50% Similarity=1.038 Sum_probs=2.8
Q ss_pred cccCCC
Q 004182 554 LVPIDY 559 (770)
Q Consensus 554 LvPl~y 559 (770)
+||=-|
T Consensus 559 fVPhgy 564 (811)
T KOG4364|consen 559 FVPHGY 564 (811)
T ss_pred ecCCcc
Confidence 455444
No 160
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=58.47 E-value=19 Score=41.64 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=4.8
Q ss_pred ccCCCChHHHh
Q 004182 555 VPIDYSTEELQ 565 (770)
Q Consensus 555 vPl~y~~ee~~ 565 (770)
||-|-.+|-+.
T Consensus 752 ~~~d~~DEImd 762 (817)
T KOG1925|consen 752 LPSDTSDEIMD 762 (817)
T ss_pred CCCChHHHHHH
Confidence 33344454443
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=57.70 E-value=23 Score=41.59 Aligned_cols=70 Identities=23% Similarity=0.303 Sum_probs=55.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHh--hcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCC--ceecCeEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELM 127 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs--~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng--~~I~Gr~L~ 127 (770)
...|.|.+.-||.++..+.++.||. .|-.+.+|.+..+ .-=||+|++..+|..|...|.. ..|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4568899999999999999999998 5889999987665 2458999999999999876632 245566554
Q ss_pred E
Q 004182 128 L 128 (770)
Q Consensus 128 V 128 (770)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 162
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=53.38 E-value=16 Score=43.70 Aligned_cols=64 Identities=14% Similarity=0.343 Sum_probs=52.8
Q ss_pred hhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004182 691 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 754 (770)
Q Consensus 691 ~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWr~li 754 (770)
..+++--+.....+|+|-.-+.+++.|+..|........=+.+|.-||.++...||..||-.|-
T Consensus 21 ~~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 21 VAKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 3688899999999999998777777777777655555555559999999999999999999886
No 163
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=53.36 E-value=6 Score=47.99 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=5.7
Q ss_pred CCcceEEEE
Q 004182 94 TPKGFGFCE 102 (770)
Q Consensus 94 k~kGfGFVe 102 (770)
..-.||||.
T Consensus 156 ~~DtygfVD 164 (1194)
T KOG4246|consen 156 QTDTYGFVD 164 (1194)
T ss_pred hcccccccc
Confidence 334588885
No 164
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=52.52 E-value=14 Score=43.26 Aligned_cols=13 Identities=31% Similarity=0.179 Sum_probs=6.8
Q ss_pred EEecCHHHHHHHH
Q 004182 101 CEFESAEGVLRAL 113 (770)
Q Consensus 101 VeF~~~esA~~AL 113 (770)
++.-+-.+|..||
T Consensus 325 ~ec~sW~~avaaL 337 (582)
T PF03276_consen 325 NECGSWASAVAAL 337 (582)
T ss_pred cccccHHHHHHHH
Confidence 3444555555555
No 165
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=51.15 E-value=80 Score=27.03 Aligned_cols=55 Identities=9% Similarity=0.015 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 65 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 65 ~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
.++-.+|+..|..|+ +..+ ..+. + | -||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I--~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRI--RDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceE--EecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 566789999999997 2222 2331 2 2 379999999999999999999988877654
No 166
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=47.56 E-value=27 Score=37.43 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=47.3
Q ss_pred CCCCCEEEEcCCCCCCCHHH-H--HHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~-L--r~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
.+.....|++++-..+...- | ...|+.|-.+...+++.+ ..+...+++|+.|........+-..-++..++
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~ 166 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIG 166 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhcccccccccc
Confidence 44456677777766665553 3 677777777888888887 47888899999888765555554433443443
No 167
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.63 E-value=59 Score=37.48 Aligned_cols=67 Identities=10% Similarity=0.089 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhc-CCeeEEEEeccCCCCCCc-ceEEEEecCHHHHHHHHHHhCCceec
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPK-GFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~-G~V~s~kiv~d~~tGk~k-GfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
+.+.|+|-.+|-.++-.+|..|+..| -.|..+++++| |.+. -...+.|.+..+|......+||..|+
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999998866 46888999985 3443 34799999999999999999999775
No 168
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=44.31 E-value=8.1 Score=33.26 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHhhhHHHHHHHHHH
Q 004182 725 VKASQMLELLQTILDDEAEMFVLKM 749 (770)
Q Consensus 725 ~~p~~l~~~l~~~lde~a~~fv~~l 749 (770)
.+-..||++|..||..+|+.||...
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~f 63 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRSF 63 (69)
T ss_dssp CCHHHHHHHHTTTSSSC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999753
No 169
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.85 E-value=3.9 Score=47.64 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
..|+|||.||+++++-..|..+|..+-.+..+.+..+-......-+++|+|.-.....-|+-+||+..+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 358899999999999999999999887777666544433445567899999988888888888988866544433
No 170
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.97 E-value=36 Score=30.64 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=36.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecC
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 105 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~ 105 (770)
..-|||||++..+-+.-...+...++.-.-+.+..+ + ...||.|.++-+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~--~-neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD--N-NEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc--C-CCCCEEEEEeCC
Confidence 345999999999988888888777765554444443 2 388999998844
No 171
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=38.38 E-value=33 Score=39.61 Aligned_cols=63 Identities=19% Similarity=0.399 Sum_probs=44.8
Q ss_pred hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCC----ChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004182 692 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRMLI 754 (770)
Q Consensus 692 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~p~~l~~~l~~~lde~a~~fv~~lWr~li 754 (770)
+.|+-|...-..=+--..-..|-.||+-.|+... =+..++..|..||-+++..||.||+..|-
T Consensus 7 d~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~~ 73 (526)
T KOG2135|consen 7 DALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDALR 73 (526)
T ss_pred HHHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhhc
Confidence 4566666554333333333458899999997644 34567799999999999999999986653
No 172
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.27 E-value=1.4e+02 Score=35.67 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=55.1
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhhc----CCeeEEEEeccC----------CCCC---------------------
Q 004182 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 94 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~Lr~lFs~~----G~V~s~kiv~d~----------~tGk--------------------- 94 (770)
....+.|-|.|+.+. +...+|..+|+.| |.|.+|.|+... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455778999999985 5556999999865 589998765321 1222
Q ss_pred ---------------C-cceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 95 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 95 ---------------~-kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
. +-|+.|+|.+...|......++|+++...-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1 236889999999999999999999987433
No 173
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.71 E-value=2e+02 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=36.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHH
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAE 107 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~e 107 (770)
+-.+-||++|||.++.-.+|+.-+...|.+-- .+.+ ..+.|-||..|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPM-SISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCce-eEee----ecCCcceeEecCCcc
Confidence 33566999999999999999999998775421 1111 124467899998754
No 174
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=35.51 E-value=8.9 Score=40.10 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCEEEEcC----CCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 52 KPQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 52 ~~~~tVfVgN----Lp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
.-..+++.|+ |...++...+...|+..|.+..+++.++ .+|.+..|+|+.|.-....-.++....++.+--+++.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCcc
Confidence 4467888898 7788999999999999999999998888 5799999999999998888889887777766555555
Q ss_pred E
Q 004182 128 L 128 (770)
Q Consensus 128 V 128 (770)
+
T Consensus 157 ~ 157 (267)
T KOG4454|consen 157 I 157 (267)
T ss_pred c
Confidence 4
No 175
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=34.61 E-value=48 Score=44.35 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.5
Q ss_pred HHhhcC
Q 004182 74 VLKVCG 79 (770)
Q Consensus 74 lFs~~G 79 (770)
|..+.|
T Consensus 1749 LHDR~G 1754 (2039)
T PRK15319 1749 LYDREG 1754 (2039)
T ss_pred HHHcCC
Confidence 333444
No 176
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=34.53 E-value=26 Score=33.70 Aligned_cols=20 Identities=50% Similarity=0.863 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004182 356 REREREKERQYEKEKEKERER 376 (770)
Q Consensus 356 RER~r~~~r~~ekerere~er 376 (770)
||..+++.|++ +||||.+|+
T Consensus 27 RetSrERSRdR-rEReRsRE~ 46 (146)
T PF11671_consen 27 RETSRERSRDR-RERERSRER 46 (146)
T ss_pred HHhhhhhhhhh-hhhhhhccc
Confidence 44444334444 444444443
No 177
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=32.59 E-value=4.2e+02 Score=27.64 Aligned_cols=73 Identities=33% Similarity=0.563 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004182 309 LKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYEKEKEKERERKRKKE 381 (770)
Q Consensus 309 ~er~~ere~~r~~r~rerer~r~~r~~~~~~re~E~~y~er~r~we~RER~r~~~r~~ekerere~er~r~~e 381 (770)
..+..+++..+..+..++.....++...+...+.+++-..+++.-..+++..+.....+..+.++.++....+
T Consensus 99 ~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~keeekr~~eE 171 (216)
T PF11600_consen 99 EEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRKKEEEKRKKEE 171 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHH
No 178
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=31.86 E-value=89 Score=27.82 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.3
Q ss_pred HHHHHHhhCCchhHHHHHHHHhhhcC---CChHHHHHHHHHhhhHHHHHHH
Q 004182 699 SKKITEFLGEEETTLVDYIVSSTQDH---VKASQMLELLQTILDDEAEMFV 746 (770)
Q Consensus 699 ~kki~e~lG~ee~~lv~~i~~~l~~~---~~p~~l~~~l~~~lde~a~~fv 746 (770)
..||..+|| .|++.-++++..|+.. .+-..|+..|.++|..++..=+
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~L 58 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKL 58 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHH
Confidence 578999999 5888999999999754 3677899999999998776533
No 179
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=43 Score=36.16 Aligned_cols=56 Identities=21% Similarity=0.458 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 004182 698 ISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 753 (770)
Q Consensus 698 i~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~-lde~--a~~fv~~lWr~l 753 (770)
|+....-|||+.|+.|..-|++.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 264 indllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 264 INDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 4555667999999999999999988888988887777665 4422 457999999654
No 180
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=30.54 E-value=1.5e+02 Score=25.22 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHH-HHHhhhHHHHHHHHHHHH
Q 004182 696 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 751 (770)
Q Consensus 696 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~-l~~~lde~a~~fv~~lWr 751 (770)
+++..-+.-++....+.+..++-..+....+|..++.+ |.++|.+ |..+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56777777788888888999999999887899999987 8888876 666775
No 181
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.33 E-value=42 Score=34.28 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHH-----HHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCe-EEE
Q 004182 54 QTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELM 127 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~-----~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr-~L~ 127 (770)
.+++++.+|+..+... ....+|..|-......+++. .++--|.|.++..|..|...+++..|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4667788888765543 34455555554444333332 24556899999999999999999999988 777
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
.-+++.
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 766664
No 182
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=30.05 E-value=84 Score=33.46 Aligned_cols=85 Identities=12% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEe-cCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF-ESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF-~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..-||||+|....--......+..+-.-.+|.+++--......|||.... .+.++...+|.++.+..+....+.|.-+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 56799999988765554444444443334455554322233446764333 45666677777776666655666676666
Q ss_pred hhHHHH
Q 004182 133 ATREYL 138 (770)
Q Consensus 133 ~~k~~l 138 (770)
.++..+
T Consensus 117 GcQdi~ 122 (299)
T KOG4840|consen 117 GCQDIM 122 (299)
T ss_pred cchHHH
Confidence 666644
No 183
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=28.94 E-value=1.3e+02 Score=27.13 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.3
Q ss_pred HhhhhhhhHHHHHHHh--hCC---chhHHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHHHH
Q 004182 690 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 747 (770)
Q Consensus 690 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~ 747 (770)
..+.|+|||..|+.|+ ||. ..+.|=+|+++..-.+..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3567999999999986 564 477899999999988888888888888888777777764
No 184
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.72 E-value=72 Score=29.45 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=35.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCH
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 106 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~ 106 (770)
..-||||+++..+-+.-...+...|+.-.-+.+..+ ....||.|.++...
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 345999999998888777777777765433334332 34459999988764
No 185
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=26.32 E-value=25 Score=34.67 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=14.7
Q ss_pred CccccCccCCCCCCcchhc
Q 004182 529 KRTAVPSVFHVEDDDDADK 547 (770)
Q Consensus 529 kr~~v~~vf~~~ddee~~~ 547 (770)
+..+|+.|||.+||+|..+
T Consensus 88 ~~~~va~~Fn~d~d~e~eE 106 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPEE 106 (150)
T ss_pred CcchhhhhhccccccChhh
Confidence 4678999999987776443
No 186
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=25.38 E-value=60 Score=35.98 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=11.9
Q ss_pred CCHHHHHHHHhhcCCeeEEE
Q 004182 66 ADSDFVLSVLKVCGTVKSWK 85 (770)
Q Consensus 66 vte~~Lr~lFs~~G~V~s~k 85 (770)
+....|-+||.++-.|.-|.
T Consensus 81 tyhevideIyyqVkHvEPWe 100 (453)
T KOG2888|consen 81 TYHEVIDEIYYQVKHVEPWE 100 (453)
T ss_pred hHHHHHHHHHHHHhccCchh
Confidence 33456667777666565553
No 187
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=24.06 E-value=2.7e+02 Score=25.30 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 004182 729 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 766 (770)
Q Consensus 729 ~l~~~l~~~lde~--a~~fv~~lWr~life~~~~~~gl~~ 766 (770)
+++..+.....+. -..|+..||++||=|+.+.+..++.
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444443332 4679999999999999999887654
No 188
>PHA01732 proline-rich protein
Probab=23.87 E-value=1.3e+02 Score=27.18 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=5.6
Q ss_pred hcCCeeEEEEec
Q 004182 77 VCGTVKSWKRAQ 88 (770)
Q Consensus 77 ~~G~V~s~kiv~ 88 (770)
..|...+++|..
T Consensus 60 ~a~gTasLrIpk 71 (94)
T PHA01732 60 KAGGTASLRIPK 71 (94)
T ss_pred hccCcceeEeec
Confidence 344444555544
No 189
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=23.45 E-value=1e+02 Score=30.97 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHH
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~ 114 (770)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 4557889999999999999999999999999777665553333344455544444444444443
No 190
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.74 E-value=1.9e+02 Score=32.98 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHH
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 115 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~ 115 (770)
.+-|-|.+.|...-..+|..+|..|| .-..++++-+ .++|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 56788889998888889999999886 4456666666 5899999999999999984
No 191
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.89 E-value=2.9e+02 Score=29.68 Aligned_cols=8 Identities=63% Similarity=0.630 Sum_probs=5.1
Q ss_pred ChHHHhhh
Q 004182 560 STEELQAA 567 (770)
Q Consensus 560 ~~ee~~~~ 567 (770)
+.+++.||
T Consensus 258 S~eEl~AV 265 (299)
T KOG3054|consen 258 SMEELAAV 265 (299)
T ss_pred cHHHHHHH
Confidence 77776544
No 192
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.38 E-value=82 Score=40.29 Aligned_cols=16 Identities=50% Similarity=1.026 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCC
Q 004182 3 RPAFPPRPPGPVGVLP 18 (770)
Q Consensus 3 ~P~~Pp~PPgp~~v~P 18 (770)
+|++||+||+|+|.-|
T Consensus 5 ppg~ppppppppg~ep 20 (2365)
T COG5178 5 PPGNPPPPPPPPGFEP 20 (2365)
T ss_pred CCCCCcccccCCCCCC
Confidence 4677776666666433
No 193
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=20.89 E-value=2.1e+02 Score=32.83 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q 004182 1 MVRPAFPPRPPGPVGVLPSVARPPVPGIPGVRPIMPPVVRPVPLPTVTPAEKPQTKV 57 (770)
Q Consensus 1 m~~P~~Pp~PPgp~~v~P~~p~P~ip~ip~~~P~~~~~~~p~~vp~~~~~~~~~~tV 57 (770)
|..++.+ .|| +.+.+|+.|+++..+++.-.|..++++.|...+...+...+...+
T Consensus 335 ~Pp~~~l-~Pp-pp~p~p~~PP~p~~~~~~r~P~gppp~~P~~l~p~~p~Gp~p~~f 389 (487)
T KOG4672|consen 335 GPPPGML-FPP-PPPPPPMRPPHPGNGMPPRMPPGPPPGPPHGLSPPNPMGPPPSSF 389 (487)
T ss_pred CCCCccc-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
No 194
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=20.61 E-value=2.1e+02 Score=31.80 Aligned_cols=9 Identities=33% Similarity=0.756 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q 004182 351 KDWEYRERE 359 (770)
Q Consensus 351 r~we~RER~ 359 (770)
+.|+.+|++
T Consensus 308 rK~eeKe~k 316 (321)
T PF07946_consen 308 RKYEEKERK 316 (321)
T ss_pred HHHHHHHHH
Confidence 334433333
No 195
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=20.40 E-value=4.7e+02 Score=32.68 Aligned_cols=10 Identities=10% Similarity=0.591 Sum_probs=4.2
Q ss_pred HhhhhcCCCC
Q 004182 662 KQLIDMIPKT 671 (770)
Q Consensus 662 ~~l~~~ip~~ 671 (770)
...++.|||+
T Consensus 659 ~~~vsiVPTS 668 (1064)
T KOG1144|consen 659 GETVSIVPTS 668 (1064)
T ss_pred cceEEeeecc
Confidence 3344444443
Done!