Query 004182
Match_columns 770
No_of_seqs 434 out of 1700
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:53:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 8.2E-38 2.8E-42 287.5 10.4 107 659-765 12-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 2.1E-22 7.2E-27 183.7 8.3 91 670-765 5-97 (111)
3 1x4q_A U4/U6 small nuclear rib 99.8 4E-20 1.4E-24 164.2 7.4 74 685-758 8-82 (92)
4 3pgw_S U1-70K; protein-RNA com 99.7 1.3E-16 4.3E-21 179.4 16.2 82 52-133 100-181 (437)
5 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-16 3.6E-21 143.9 11.0 82 52-133 17-98 (99)
6 2khc_A Testis-specific RNP-typ 99.7 1.2E-15 4E-20 140.1 14.4 82 50-131 36-117 (118)
7 3s8s_A Histone-lysine N-methyl 99.6 9.7E-16 3.3E-20 140.4 13.0 85 52-136 4-88 (110)
8 3n9u_C Cleavage and polyadenyl 99.6 7.8E-16 2.7E-20 149.7 12.8 83 52-134 53-137 (156)
9 1u6f_A Tcubp1, RNA-binding pro 99.6 2.3E-15 7.8E-20 142.1 14.9 85 49-133 37-121 (139)
10 2cq4_A RNA binding motif prote 99.6 2.4E-15 8.3E-20 137.3 10.9 83 51-134 22-104 (114)
11 3ns6_A Eukaryotic translation 99.6 8E-16 2.7E-20 138.0 7.1 86 53-138 5-97 (100)
12 2lxi_A RNA-binding protein 10; 99.6 2.2E-16 7.5E-21 139.4 3.3 81 54-134 1-83 (91)
13 2e5h_A Zinc finger CCHC-type a 99.6 7.1E-15 2.4E-19 129.2 12.8 82 51-132 13-94 (94)
14 2la6_A RNA-binding protein FUS 99.6 3E-15 1E-19 133.3 10.5 81 51-131 10-98 (99)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.9E-15 1.3E-19 128.3 10.6 82 51-132 4-85 (85)
16 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.5E-15 1.5E-19 128.4 10.9 82 52-133 4-85 (87)
17 3md1_A Nuclear and cytoplasmic 99.6 4.8E-15 1.6E-19 127.1 10.6 80 54-133 1-80 (83)
18 2lkz_A RNA-binding protein 5; 99.6 2.8E-15 9.4E-20 134.1 8.9 83 51-133 6-94 (95)
19 2x1f_A MRNA 3'-END-processing 99.6 6.9E-15 2.3E-19 130.2 11.3 82 53-134 1-82 (96)
20 2cpz_A CUG triplet repeat RNA- 99.6 1.1E-14 3.7E-19 133.2 12.6 83 51-133 22-104 (115)
21 1x5u_A Splicing factor 3B subu 99.6 7.4E-15 2.5E-19 131.8 11.2 83 51-133 12-94 (105)
22 2cqc_A Arginine/serine-rich sp 99.6 9.9E-15 3.4E-19 128.3 11.7 82 51-132 12-93 (95)
23 2dgs_A DAZ-associated protein 99.6 8.4E-15 2.9E-19 130.2 10.8 82 51-133 7-88 (99)
24 2dnz_A Probable RNA-binding pr 99.6 8.1E-15 2.8E-19 129.0 10.3 82 52-133 3-84 (95)
25 1oo0_B CG8781-PA, drosophila Y 99.6 8.9E-15 3E-19 132.5 10.9 83 51-133 23-105 (110)
26 1whw_A Hypothetical protein ri 99.6 1.3E-14 4.5E-19 128.8 11.6 83 51-133 5-87 (99)
27 2dnm_A SRP46 splicing factor; 99.6 7E-15 2.4E-19 131.7 9.7 83 51-133 10-92 (103)
28 2jrs_A RNA-binding protein 39; 99.6 6.5E-15 2.2E-19 134.1 9.5 84 50-133 22-105 (108)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.3E-15 3.2E-19 130.5 10.3 83 51-133 9-91 (102)
30 2dgo_A Cytotoxic granule-assoc 99.6 1.9E-14 6.4E-19 131.4 12.5 83 51-133 12-94 (115)
31 4f25_A Polyadenylate-binding p 99.6 8.7E-15 3E-19 134.5 10.0 78 54-133 5-82 (115)
32 2do4_A Squamous cell carcinoma 99.6 2.1E-14 7.1E-19 127.9 12.2 82 51-133 14-95 (100)
33 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.5E-15 8.4E-20 134.5 6.1 81 51-133 16-97 (100)
34 1p27_B RNA-binding protein 8A; 99.6 7.8E-15 2.7E-19 131.9 9.4 82 52-133 21-102 (106)
35 2cq0_A Eukaryotic translation 99.6 1.3E-14 4.4E-19 129.9 10.7 83 51-133 12-94 (103)
36 1x5t_A Splicing factor 3B subu 99.6 8.3E-15 2.8E-19 129.2 9.2 82 52-133 3-85 (96)
37 3s7r_A Heterogeneous nuclear r 99.6 1.8E-14 6.1E-19 124.9 11.2 80 51-131 8-87 (87)
38 3p5t_L Cleavage and polyadenyl 99.6 2.2E-15 7.5E-20 132.1 5.4 80 55-134 2-83 (90)
39 1x4h_A RNA-binding protein 28; 99.6 1.7E-14 5.8E-19 130.6 11.4 83 51-133 12-100 (111)
40 3ulh_A THO complex subunit 4; 99.6 1.9E-14 6.3E-19 129.6 11.4 81 51-132 26-106 (107)
41 2cph_A RNA binding motif prote 99.5 1.7E-14 6E-19 129.7 11.0 83 51-133 12-96 (107)
42 1x5s_A Cold-inducible RNA-bind 99.5 1.4E-14 4.9E-19 129.2 10.2 83 51-133 9-91 (102)
43 2ywk_A Putative RNA-binding pr 99.5 1.3E-14 4.6E-19 127.6 9.9 81 51-132 13-93 (95)
44 2dgp_A Bruno-like 4, RNA bindi 99.5 1.3E-14 4.4E-19 130.5 9.9 83 51-133 10-95 (106)
45 2kt5_A RNA and export factor-b 99.5 9.3E-14 3.2E-18 128.8 15.5 82 51-133 32-113 (124)
46 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 6.7E-14 2.3E-18 131.5 14.7 82 50-131 59-140 (140)
47 2cpe_A RNA-binding protein EWS 99.5 2.1E-14 7.3E-19 130.6 10.9 83 51-133 12-102 (113)
48 4a8x_A RNA-binding protein wit 99.5 1.7E-14 5.9E-19 124.8 9.6 81 53-133 3-84 (88)
49 2cqi_A Nucleolysin TIAR; RNA r 99.5 5.6E-14 1.9E-18 125.8 13.2 82 50-133 11-92 (103)
50 2err_A Ataxin-2-binding protei 99.5 2.1E-14 7E-19 130.7 10.2 81 51-133 26-106 (109)
51 2rs2_A Musashi-1, RNA-binding 99.5 2E-14 6.7E-19 131.0 10.0 83 50-133 21-103 (109)
52 3ex7_B RNA-binding protein 8A; 99.5 1.6E-14 5.6E-19 134.0 9.6 83 51-133 19-101 (126)
53 2div_A TRNA selenocysteine ass 99.5 1.6E-14 5.4E-19 128.3 9.1 83 51-133 6-93 (99)
54 2dnh_A Bruno-like 5, RNA bindi 99.5 3.1E-14 1E-18 127.8 11.0 82 51-133 12-96 (105)
55 2cpf_A RNA binding motif prote 99.5 1.6E-14 5.5E-19 128.0 8.9 82 52-133 3-87 (98)
56 3ucg_A Polyadenylate-binding p 99.5 2.6E-14 8.9E-19 124.1 10.1 79 54-133 6-84 (89)
57 2dng_A Eukaryotic translation 99.5 4E-14 1.4E-18 126.9 10.9 81 51-133 12-92 (103)
58 2m2b_A RNA-binding protein 10; 99.5 1.3E-14 4.4E-19 136.2 8.0 82 51-133 20-107 (131)
59 2nlw_A Eukaryotic translation 99.5 1.2E-14 4.2E-19 131.2 7.5 82 51-134 12-100 (105)
60 1wi8_A EIF-4B, eukaryotic tran 99.5 3.5E-14 1.2E-18 127.5 10.3 80 52-133 13-93 (104)
61 1rk8_A CG8781-PA, CG8781-PA pr 99.5 4.1E-14 1.4E-18 138.0 11.3 83 51-133 69-151 (165)
62 2fy1_A RNA-binding motif prote 99.5 3.1E-14 1.1E-18 131.2 9.9 82 51-133 4-85 (116)
63 2cqp_A RNA-binding protein 12; 99.5 2.4E-14 8.2E-19 126.9 8.8 82 51-132 12-93 (98)
64 2cqd_A RNA-binding region cont 99.5 6.5E-14 2.2E-18 128.2 11.9 83 50-133 13-95 (116)
65 2cq3_A RNA-binding protein 9; 99.5 1.1E-13 3.6E-18 124.0 13.1 81 51-133 12-92 (103)
66 2kxn_B Transformer-2 protein h 99.5 1.9E-14 6.5E-19 135.4 8.5 83 51-133 43-125 (129)
67 1s79_A Lupus LA protein; RRM, 99.5 2.4E-14 8.2E-19 129.6 8.9 81 51-133 8-88 (103)
68 2dgv_A HnRNP M, heterogeneous 99.5 3.4E-14 1.2E-18 124.3 9.5 81 51-133 5-85 (92)
69 2d9p_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 127.0 9.8 81 51-133 12-92 (103)
70 1x4b_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 130.2 9.4 81 52-133 25-105 (116)
71 2do0_A HnRNP M, heterogeneous 99.5 7.4E-14 2.5E-18 127.1 11.7 82 51-133 12-93 (114)
72 2jwn_A Embryonic polyadenylate 99.5 2.3E-14 7.8E-19 132.6 8.3 80 53-133 35-114 (124)
73 2dgx_A KIAA0430 protein; RRM d 99.5 7.9E-14 2.7E-18 123.8 11.4 79 52-133 7-89 (96)
74 2kn4_A Immunoglobulin G-bindin 99.5 7.1E-14 2.4E-18 134.5 12.0 83 51-133 67-149 (158)
75 2dh8_A DAZ-associated protein 99.5 4.2E-14 1.4E-18 127.0 9.6 82 51-133 13-94 (105)
76 2dhg_A TRNA selenocysteine ass 99.5 2.3E-14 7.9E-19 128.3 7.9 82 51-133 6-89 (104)
77 2dgw_A Probable RNA-binding pr 99.5 9E-14 3.1E-18 121.6 11.4 80 51-133 7-86 (91)
78 1x4e_A RNA binding motif, sing 99.5 7.9E-15 2.7E-19 126.6 4.5 80 52-131 3-82 (85)
79 1p1t_A Cleavage stimulation fa 99.5 2.2E-14 7.4E-19 128.4 7.4 83 52-134 6-88 (104)
80 2cqg_A TDP-43, TAR DNA-binding 99.5 1.2E-13 4.2E-18 123.6 12.2 81 51-133 12-92 (103)
81 2ek1_A RNA-binding protein 12; 99.5 2E-14 6.9E-19 126.5 7.0 81 52-132 13-93 (95)
82 2mss_A Protein (musashi1); RNA 99.5 2.1E-14 7.2E-19 121.0 6.5 75 56-131 1-75 (75)
83 2a3j_A U1 small nuclear ribonu 99.5 5.3E-14 1.8E-18 132.4 9.9 85 51-138 26-114 (127)
84 1h2v_Z 20 kDa nuclear CAP bind 99.5 9.2E-14 3.1E-18 133.9 11.6 83 51-133 36-118 (156)
85 1x4a_A Splicing factor, argini 99.5 2.4E-13 8.3E-18 123.0 13.6 80 51-133 19-98 (109)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2E-14 6.7E-19 121.5 5.5 76 55-131 1-76 (77)
87 2cpy_A RNA-binding protein 12; 99.5 8.1E-14 2.8E-18 127.7 10.0 81 51-133 12-93 (114)
88 2dis_A Unnamed protein product 99.5 6.5E-14 2.2E-18 126.5 8.8 83 51-133 5-91 (109)
89 2db1_A Heterogeneous nuclear r 99.5 9.7E-14 3.3E-18 128.2 10.1 81 51-133 14-97 (118)
90 2wbr_A GW182, gawky, LD47780P; 99.5 1.6E-13 5.5E-18 120.9 10.7 75 52-132 5-79 (89)
91 1fj7_A Nucleolin RBD1, protein 99.5 1.4E-14 4.8E-19 129.3 4.0 81 51-133 14-94 (101)
92 1x5o_A RNA binding motif, sing 99.5 2E-13 6.8E-18 124.4 11.7 82 51-133 22-111 (114)
93 2j8a_A Histone-lysine N-methyl 99.5 1.2E-13 4.2E-18 129.6 10.4 89 55-143 3-107 (136)
94 1nu4_A U1A RNA binding domain; 99.5 5.9E-14 2E-18 124.0 7.9 82 51-135 5-90 (97)
95 2ki2_A SS-DNA binding protein 99.5 1.5E-14 5.2E-19 126.1 4.0 79 55-134 2-80 (90)
96 1wel_A RNA-binding protein 12; 99.5 6E-14 2.1E-18 130.3 8.1 83 51-134 22-104 (124)
97 3lqv_A PRE-mRNA branch site pr 99.5 1.3E-13 4.6E-18 125.7 10.3 81 52-135 6-86 (115)
98 3q2s_C Cleavage and polyadenyl 99.5 5E-14 1.7E-18 145.1 8.2 82 53-134 67-150 (229)
99 2xnq_A Nuclear polyadenylated 99.5 2E-13 6.8E-18 121.7 11.0 75 51-133 19-94 (97)
100 2la4_A Nuclear and cytoplasmic 99.5 1.4E-13 4.8E-18 122.7 9.5 76 52-133 25-100 (101)
101 2krb_A Eukaryotic translation 99.5 4.3E-14 1.5E-18 121.3 5.6 73 54-128 1-80 (81)
102 2jvo_A Nucleolar protein 3; nu 99.5 1.9E-13 6.4E-18 124.5 10.0 77 50-134 27-103 (108)
103 2cpx_A Hypothetical protein FL 99.5 7.2E-14 2.5E-18 127.4 7.2 82 52-133 23-104 (115)
104 3pgw_A U1-A; protein-RNA compl 99.5 8.1E-13 2.8E-17 138.3 16.2 78 50-132 203-281 (282)
105 1iqt_A AUF1, heterogeneous nuc 99.4 6E-14 2.1E-18 118.0 5.8 75 56-131 1-75 (75)
106 1x4c_A Splicing factor, argini 99.4 5.4E-13 1.8E-17 120.9 12.5 75 52-133 13-92 (108)
107 2cpi_A CCR4-NOT transcription 99.4 1.2E-13 4E-18 126.0 8.1 82 52-133 13-100 (111)
108 2f3j_A RNA and export factor b 99.4 5.2E-13 1.8E-17 132.3 13.4 84 50-134 84-167 (177)
109 1sjq_A Polypyrimidine tract-bi 99.4 2E-13 6.8E-18 124.4 9.5 77 51-133 13-91 (105)
110 2fc9_A NCL protein; structure 99.4 3.7E-13 1.3E-17 120.0 11.0 79 51-133 12-90 (101)
111 1wg5_A Heterogeneous nuclear r 99.4 2.1E-13 7.1E-18 122.9 9.4 81 51-133 12-93 (104)
112 4f02_A Polyadenylate-binding p 99.4 2.6E-13 9E-18 137.1 11.0 82 53-134 14-95 (213)
113 2lea_A Serine/arginine-rich sp 99.4 7.1E-14 2.4E-18 132.4 6.3 83 51-133 44-126 (135)
114 2cq1_A PTB-like protein L; RRM 99.4 5.8E-13 2E-17 120.4 11.7 78 50-133 11-90 (101)
115 2fc8_A NCL protein; structure 99.4 4.2E-13 1.4E-17 119.7 10.2 80 51-133 12-91 (102)
116 2ytc_A PRE-mRNA-splicing facto 99.4 5E-13 1.7E-17 115.1 10.2 75 51-131 9-84 (85)
117 2lmi_A GRSF-1, G-rich sequence 99.4 9.7E-14 3.3E-18 125.7 5.9 81 51-133 8-91 (107)
118 1x4g_A Nucleolysin TIAR; struc 99.4 5.3E-13 1.8E-17 120.9 10.4 77 51-133 22-98 (109)
119 3r27_A HnRNP L, heterogeneous 99.4 5.4E-13 1.9E-17 120.5 10.3 77 51-133 18-96 (100)
120 2jvr_A Nucleolar protein 3; RN 99.4 4.4E-13 1.5E-17 123.2 9.9 78 52-133 26-104 (111)
121 3md3_A Nuclear and cytoplasmic 99.4 9.2E-13 3.1E-17 125.5 12.1 82 51-132 84-165 (166)
122 2dnq_A RNA-binding protein 4B; 99.4 5.4E-13 1.8E-17 116.6 9.5 75 51-133 5-79 (90)
123 2e5j_A Methenyltetrahydrofolat 99.4 5.2E-13 1.8E-17 118.4 9.6 77 52-133 17-93 (97)
124 2dgt_A RNA-binding protein 30; 99.4 1.1E-12 3.6E-17 115.2 11.4 75 51-133 7-81 (92)
125 1why_A Hypothetical protein ri 99.4 8.9E-13 3.1E-17 116.8 11.0 76 52-133 15-92 (97)
126 2hgl_A HNRPF protein, heteroge 99.4 3E-13 1E-17 128.8 8.4 81 51-133 41-124 (136)
127 1wez_A HnRNP H', FTP-3, hetero 99.4 2.1E-13 7E-18 123.0 6.9 79 52-133 13-91 (102)
128 3egn_A RNA-binding protein 40; 99.4 7.4E-14 2.5E-18 132.6 4.1 84 51-134 42-130 (143)
129 2xs2_A Deleted in azoospermia- 99.4 1.8E-13 6.2E-18 122.2 6.4 80 52-134 7-86 (102)
130 2dnn_A RNA-binding protein 12; 99.4 7.8E-13 2.7E-17 121.1 10.7 78 53-133 15-92 (109)
131 1fjc_A Nucleolin RBD2, protein 99.4 2.2E-13 7.5E-18 120.2 6.8 78 51-133 13-90 (96)
132 1x4d_A Matrin 3; structural ge 99.4 4E-13 1.4E-17 121.7 8.5 76 52-133 13-91 (102)
133 1fxl_A Paraneoplastic encephal 99.4 1.1E-12 3.7E-17 125.2 11.1 81 53-133 1-81 (167)
134 2cpj_A Non-POU domain-containi 99.4 1E-12 3.5E-17 116.8 9.9 77 51-133 12-88 (99)
135 2ad9_A Polypyrimidine tract-bi 99.4 7.2E-13 2.4E-17 123.4 8.8 77 51-133 28-106 (119)
136 2dnp_A RNA-binding protein 14; 99.4 1.5E-12 5.3E-17 113.6 10.4 75 51-133 6-80 (90)
137 2lcw_A RNA-binding protein FUS 99.1 3.7E-14 1.3E-18 129.9 0.0 83 51-133 4-94 (116)
138 2i2y_A Fusion protein consists 99.4 9.8E-13 3.4E-17 125.8 9.9 78 51-133 70-147 (150)
139 1b7f_A Protein (SXL-lethal pro 99.4 1.1E-12 3.8E-17 125.6 10.1 81 53-133 2-82 (168)
140 1wf1_A RNA-binding protein RAL 99.4 2E-12 6.9E-17 117.2 11.3 74 52-133 25-99 (110)
141 1whx_A Hypothetical protein ri 99.4 5.1E-13 1.8E-17 122.1 7.3 76 52-133 8-83 (111)
142 2hvz_A Splicing factor, argini 99.4 4.6E-13 1.6E-17 119.4 6.8 74 55-133 1-74 (101)
143 2dgu_A Heterogeneous nuclear r 99.4 2.2E-12 7.6E-17 115.6 11.3 74 52-133 9-82 (103)
144 2e44_A Insulin-like growth fac 99.4 1.1E-12 3.7E-17 115.7 8.9 78 52-133 13-91 (96)
145 2g4b_A Splicing factor U2AF 65 99.4 1.6E-12 5.5E-17 125.2 11.0 80 52-131 92-171 (172)
146 2cpd_A Apobec-1 stimulating pr 99.4 5E-12 1.7E-16 112.3 12.4 75 51-133 12-88 (99)
147 1wex_A Hypothetical protein (r 99.4 2E-12 6.8E-17 117.4 9.7 77 51-133 12-90 (104)
148 1x4f_A Matrin 3; structural ge 99.4 2.1E-12 7.2E-17 119.0 9.8 77 51-133 22-101 (112)
149 2kvi_A Nuclear polyadenylated 99.3 1.1E-12 3.8E-17 116.2 7.6 75 51-133 7-82 (96)
150 2yh0_A Splicing factor U2AF 65 99.3 4.9E-12 1.7E-16 124.6 13.0 83 51-133 111-193 (198)
151 1l3k_A Heterogeneous nuclear r 99.3 2.3E-12 8E-17 126.7 10.0 82 51-133 10-91 (196)
152 2cqh_A IGF-II mRNA-binding pro 99.3 2.2E-12 7.4E-17 113.2 8.5 76 51-133 5-82 (93)
153 2e5g_A U6 snRNA-specific termi 99.3 2.4E-12 8.2E-17 113.4 8.8 75 52-132 6-80 (94)
154 2qfj_A FBP-interacting repress 99.3 2.9E-12 9.9E-17 128.0 9.8 82 52-133 123-204 (216)
155 1x5p_A Negative elongation fac 99.3 8.8E-12 3E-16 110.5 11.8 75 51-133 12-86 (97)
156 1wg1_A KIAA1579 protein, homol 99.3 2.9E-12 1E-16 111.7 8.4 75 52-133 3-77 (88)
157 4f02_A Polyadenylate-binding p 99.3 5.5E-12 1.9E-16 127.4 11.4 80 53-134 102-181 (213)
158 2hgm_A HNRPF protein, heteroge 99.3 2.2E-12 7.5E-17 121.2 7.8 79 52-133 40-120 (126)
159 2dnl_A Cytoplasmic polyadenyla 99.3 3E-12 1E-16 117.1 8.3 78 51-131 5-85 (114)
160 3d2w_A TAR DNA-binding protein 99.3 6.8E-12 2.3E-16 110.2 10.0 75 51-134 8-84 (89)
161 2dha_A FLJ20171 protein; RRM d 99.3 2.1E-12 7.3E-17 120.8 7.1 80 52-133 21-104 (123)
162 2cjk_A Nuclear polyadenylated 99.3 2.2E-12 7.4E-17 123.7 7.3 80 53-133 86-165 (167)
163 1l3k_A Heterogeneous nuclear r 99.3 6.2E-12 2.1E-16 123.6 10.1 82 52-134 102-183 (196)
164 1b7f_A Protein (SXL-lethal pro 99.3 7.7E-12 2.6E-16 119.7 10.5 81 51-131 86-168 (168)
165 3beg_B Splicing factor, argini 99.3 2.7E-12 9.1E-17 117.9 6.8 73 53-132 15-92 (115)
166 3md3_A Nuclear and cytoplasmic 99.3 6.3E-12 2.1E-16 119.7 9.6 78 55-133 1-78 (166)
167 2hgn_A Heterogeneous nuclear r 99.3 1.1E-12 3.9E-17 125.2 3.9 80 51-133 43-122 (139)
168 2qfj_A FBP-interacting repress 99.3 6.4E-12 2.2E-16 125.4 9.2 82 53-134 27-108 (216)
169 2hzc_A Splicing factor U2AF 65 99.3 8.2E-12 2.8E-16 107.8 8.7 71 52-129 4-85 (87)
170 2cq2_A Hypothetical protein LO 99.3 9.9E-12 3.4E-16 114.8 9.6 76 52-133 23-105 (114)
171 3tyt_A Heterogeneous nuclear r 99.3 1.1E-11 3.9E-16 125.3 10.7 77 52-133 2-79 (205)
172 1fxl_A Paraneoplastic encephal 99.3 1E-11 3.5E-16 118.4 9.7 80 52-131 86-167 (167)
173 3nmr_A Cugbp ELAV-like family 99.3 7.9E-12 2.7E-16 120.3 8.9 80 52-132 93-175 (175)
174 2cjk_A Nuclear polyadenylated 99.3 1.1E-11 3.7E-16 118.8 9.0 79 53-133 2-80 (167)
175 2diu_A KIAA0430 protein; struc 99.2 1.2E-11 3.9E-16 110.3 8.3 71 54-134 8-84 (96)
176 1sjr_A Polypyrimidine tract-bi 99.2 1.5E-11 5.2E-16 120.4 9.9 78 52-133 44-123 (164)
177 2pe8_A Splicing factor 45; RRM 99.2 3E-11 1E-15 109.8 11.2 82 52-133 6-93 (105)
178 3zzy_A Polypyrimidine tract-bi 99.2 2.5E-11 8.7E-16 114.6 10.5 77 52-133 26-105 (130)
179 3pgw_A U1-A; protein-RNA compl 99.2 2.6E-11 8.8E-16 126.8 11.6 84 50-136 5-92 (282)
180 2e5i_A Heterogeneous nuclear r 99.2 5.4E-11 1.8E-15 111.5 12.5 74 54-133 25-101 (124)
181 3nmr_A Cugbp ELAV-like family 99.2 1.8E-11 6E-16 117.8 9.2 81 53-133 2-87 (175)
182 2bz2_A Negative elongation fac 99.2 1.8E-11 6.2E-16 113.8 8.5 74 52-133 37-110 (121)
183 2voo_A Lupus LA protein; RNA-b 99.2 2.2E-11 7.5E-16 122.1 9.6 79 53-133 108-186 (193)
184 1fje_B Nucleolin RBD12, protei 99.2 3.7E-11 1.3E-15 116.3 9.8 78 51-133 96-173 (175)
185 1wf0_A TDP-43, TAR DNA-binding 99.2 1.5E-11 5.3E-16 106.8 6.1 75 52-133 3-77 (88)
186 2adc_A Polypyrimidine tract-bi 99.2 3.2E-11 1.1E-15 123.1 9.1 78 51-133 31-109 (229)
187 3smz_A Protein raver-1, ribonu 99.2 6.6E-11 2.3E-15 123.8 11.7 82 52-133 93-174 (284)
188 2ghp_A U4/U6 snRNA-associated 99.2 4.4E-11 1.5E-15 125.7 9.8 82 51-133 207-290 (292)
189 3smz_A Protein raver-1, ribonu 99.1 8.7E-11 3E-15 122.9 10.2 83 51-134 181-264 (284)
190 1fje_B Nucleolin RBD12, protei 99.1 1.9E-11 6.5E-16 118.3 4.5 82 50-133 9-90 (175)
191 3tyt_A Heterogeneous nuclear r 99.1 8.2E-11 2.8E-15 118.9 8.8 78 52-131 121-204 (205)
192 3u1l_A PRE-mRNA-splicing facto 99.1 7.3E-11 2.5E-15 122.4 8.0 79 50-134 130-229 (240)
193 3sde_A Paraspeckle component 1 99.1 2.1E-10 7.1E-15 119.5 11.0 77 51-133 19-95 (261)
194 1qm9_A Polypyrimidine tract-bi 99.1 8.7E-11 3E-15 116.3 7.5 75 54-133 3-78 (198)
195 1qm9_A Polypyrimidine tract-bi 99.1 2.6E-10 9E-15 112.8 9.8 78 51-133 117-196 (198)
196 2dit_A HIV TAT specific factor 99.1 2.4E-10 8.2E-15 104.2 8.4 78 52-133 13-101 (112)
197 2ghp_A U4/U6 snRNA-associated 99.1 2.8E-10 9.4E-15 119.6 9.5 81 53-134 116-197 (292)
198 3v4m_A Splicing factor U2AF 65 99.1 5.6E-10 1.9E-14 101.3 10.1 82 52-133 3-96 (105)
199 3sde_A Paraspeckle component 1 99.0 3.9E-10 1.3E-14 117.4 9.6 81 52-133 94-178 (261)
200 1jmt_A Splicing factor U2AF 35 99.0 1.8E-10 6E-15 104.4 5.2 72 59-131 20-103 (104)
201 2adc_A Polypyrimidine tract-bi 99.0 6.3E-10 2.1E-14 113.5 9.5 78 51-133 148-227 (229)
202 3ue2_A Poly(U)-binding-splicin 99.0 9.6E-10 3.3E-14 102.0 9.0 81 53-133 19-108 (118)
203 2g4b_A Splicing factor U2AF 65 99.0 8.5E-10 2.9E-14 106.0 8.8 73 53-132 3-86 (172)
204 2yh0_A Splicing factor U2AF 65 99.0 1.1E-09 3.9E-14 107.5 9.3 74 53-133 3-87 (198)
205 3tht_A Alkylated DNA repair pr 98.8 7.6E-09 2.6E-13 112.6 9.4 77 50-132 14-97 (345)
206 1owx_A Lupus LA protein, SS-B, 98.7 3.2E-08 1.1E-12 92.2 10.2 90 50-145 14-109 (121)
207 2d9o_A DNAJ (HSP40) homolog, s 98.7 2.8E-08 9.5E-13 89.5 9.6 63 64-133 27-89 (100)
208 3s6e_A RNA-binding protein 39; 98.7 4.6E-08 1.6E-12 90.1 10.9 83 54-141 7-99 (114)
209 2dnr_A Synaptojanin-1; RRM dom 98.6 6.5E-08 2.2E-12 85.4 8.0 74 51-133 4-85 (91)
210 1ufw_A Synaptojanin 2; RNP dom 98.4 4E-07 1.4E-11 80.8 7.3 71 51-130 12-91 (95)
211 3dxb_A Thioredoxin N-terminall 98.2 2.4E-06 8.1E-11 86.5 7.7 68 66-133 141-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.6 0.00033 1.1E-08 63.7 10.8 75 52-132 19-98 (117)
213 1wey_A Calcipressin 1; structu 96.7 0.0028 9.4E-08 57.2 7.1 75 53-133 4-83 (104)
214 1uw4_A UPF3X; nonsense mediate 94.9 0.085 2.9E-06 46.5 8.1 68 55-122 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 94.0 0.21 7.2E-06 44.5 8.6 54 54-116 16-69 (100)
216 2dhx_A Poly (ADP-ribose) polym 92.9 0.46 1.6E-05 42.7 9.0 69 53-130 7-80 (104)
217 1wwh_A Nucleoporin 35, nucleop 92.2 0.45 1.6E-05 43.8 8.3 71 53-131 23-94 (119)
218 3ctr_A Poly(A)-specific ribonu 91.8 0.2 6.7E-06 44.8 5.2 54 55-117 7-60 (101)
219 3p3d_A Nucleoporin 53; structu 90.0 0.54 1.8E-05 44.0 6.5 84 54-141 7-104 (132)
220 2kn4_A Immunoglobulin G-bindin 87.5 0.38 1.3E-05 45.2 3.8 36 83-120 2-37 (158)
221 2l08_A Regulator of nonsense t 85.7 0.99 3.4E-05 40.1 5.2 69 54-122 9-79 (97)
222 2i2y_A Fusion protein consists 85.5 0.37 1.3E-05 45.0 2.5 40 92-132 9-49 (150)
223 3pq1_A Poly(A) RNA polymerase; 79.9 0.92 3.2E-05 51.0 3.4 55 54-114 53-107 (464)
224 3m91_B Prokaryotic ubiquitin-l 58.8 3.5 0.00012 31.1 1.3 23 727-749 16-38 (44)
225 3d45_A Poly(A)-specific ribonu 57.8 19 0.00066 40.7 7.9 55 54-117 440-494 (507)
226 2v75_A Nuclear polyadenylated 54.6 31 0.0011 30.4 6.7 61 690-750 6-72 (104)
227 3qks_C DNA double-strand break 36.5 17 0.00057 25.8 1.8 25 698-722 7-31 (34)
228 4gyx_A Type III collagen fragm 35.2 51 0.0017 22.3 3.8 14 4-17 2-15 (31)
229 3m9d_G Prokaryotic ubiquitin-l 28.5 8.2 0.00028 31.7 -1.0 24 726-749 39-62 (68)
230 4f25_A Polyadenylate-binding p 21.0 25 0.00086 30.9 0.6 18 52-69 95-112 (115)
231 2g0c_A ATP-dependent RNA helic 20.2 1.7E+02 0.0059 23.5 5.6 67 56-131 2-74 (76)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=8.2e-38 Score=287.49 Aligned_cols=107 Identities=44% Similarity=0.875 Sum_probs=101.7
Q ss_pred hhHHhhhhcCCCCchhhhcccccccccchhhHhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHHHHHhh
Q 004182 659 LDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTIL 738 (770)
Q Consensus 659 ~~~~~l~~~ip~~k~~lf~~~i~w~~~d~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~l 738 (770)
.++++|+++||++|++||+|+|+|++||.++|.++|+|||++||+||||++|++||+||+++|..|.+|+.|+++|++||
T Consensus 12 ~~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~L 91 (119)
T 3v53_A 12 KHIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVL 91 (119)
T ss_dssp HSSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccc
Q 004182 739 DDEAEMFVLKMWRMLIFEIKKVETGLA 765 (770)
Q Consensus 739 de~a~~fv~~lWr~life~~~~~~gl~ 765 (770)
|++|+.||.+||||||||+++++.||+
T Consensus 92 DeeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 92 DEEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 999999999999999999999999997
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.86 E-value=2.1e-22 Score=183.73 Aligned_cols=91 Identities=21% Similarity=0.448 Sum_probs=82.9
Q ss_pred CCchhhhcccccccccchhhHhhhhhhhHHHHHHHhhCCchhHHHHHHHHhhhc-CCChHHHHHHHHHhhh-HHHHHHHH
Q 004182 670 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 747 (770)
Q Consensus 670 ~~k~~lf~~~i~w~~~d~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~p~~l~~~l~~~ld-e~a~~fv~ 747 (770)
+..+.+|+++|||..|+.. .|||||++||++|||++|++|||||+++|.. +++|+.|+++|++||+ ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3457899999999999765 5899999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhccc
Q 004182 748 KMWRMLIFEIKKVETGLA 765 (770)
Q Consensus 748 ~lWr~life~~~~~~gl~ 765 (770)
+||+||||. .+...||.
T Consensus 81 eLW~LLi~a-q~~~~GIP 97 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIP 97 (111)
T ss_dssp HHHHHHHHH-TTSSSSCC
T ss_pred HHHHHHHHh-hcCCcCcC
Confidence 999999975 67777875
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=164.22 Aligned_cols=74 Identities=22% Similarity=0.365 Sum_probs=68.1
Q ss_pred cchhhHh-hhhhhhHHHHHHHhhCCchhHHHHHHHHhhhcCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004182 685 YDKHELH-ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 758 (770)
Q Consensus 685 ~d~~~~~-~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~p~~l~~~l~~~lde~a~~fv~~lWr~life~~ 758 (770)
||.+.++ +.|||||++||++|||++|++||+||+++|..+.+|+.|+++|++|||++|..||.+||+|||+-+.
T Consensus 8 ~d~~kv~l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq~ 82 (92)
T 1x4q_A 8 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGRS 82 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHSC
T ss_pred ccchHHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 4545444 7899999999999999999999999999999999999999999999999999999999999997653
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=1.3e-16 Score=179.36 Aligned_cols=82 Identities=18% Similarity=0.406 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.|++.+|..+|+.||.|..|.|+.+..+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 75
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=143.90 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 6
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=1.2e-15 Score=140.09 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=78.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
|+
T Consensus 116 ~a 117 (118)
T 2khc_A 116 LK 117 (118)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=9.7e-16 Score=140.36 Aligned_cols=85 Identities=15% Similarity=0.242 Sum_probs=80.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
++.++|||+|||+.+++.+|+.+|+.||.|.++.++.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhhHH
Q 004182 132 QATRE 136 (770)
Q Consensus 132 ~~~k~ 136 (770)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 8
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=149.67 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G--~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...++|||||||+.+++.+|+.+|+.|| .|.++.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999998999999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004182 130 VDQAT 134 (770)
Q Consensus 130 ~a~~~ 134 (770)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98753
No 9
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=142.10 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=80.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 49 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 49 ~~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
+...+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 98764
No 10
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=137.31 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345789999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred ehhh
Q 004182 131 DQAT 134 (770)
Q Consensus 131 a~~~ 134 (770)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8753
No 11
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=8e-16 Score=137.95 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC-eE
Q 004182 53 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 125 (770)
Q Consensus 53 ~~~tVfVgNLp~------~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G-r~ 125 (770)
..++|||+|||+ .+++.+|+.+|+.||.|.++.++.++.||+++|||||+|.+.++|.+||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999998889999999999999999999999999999999 99
Q ss_pred EEEEEehhhHHHH
Q 004182 126 LMLKVDQATREYL 138 (770)
Q Consensus 126 L~V~~a~~~k~~l 138 (770)
|.|.++.....|.
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998866654
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-16 Score=139.44 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh-CCceecCeEEEEEEe
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 131 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L-ng~~I~Gr~L~V~~a 131 (770)
+++|||+|||+.+++++|+.+|+.|| .|.+++++.++.+|.++|||||+|.+.++|.+||..| |++.|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999999999999999999999999999999876 567899999999998
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 753
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.1e-15 Score=129.16 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.++.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 14
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=133.33 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..+.++|||||||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred CeEEEEEEe
Q 004182 123 GQELMLKVD 131 (770)
Q Consensus 123 Gr~L~V~~a 131 (770)
|+.|.|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999986
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=3.9e-15 Score=128.26 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=128.42 Aligned_cols=82 Identities=16% Similarity=0.320 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||..+++.+|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=4.8e-15 Score=127.10 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999875
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=134.08 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC--eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCc----eecCe
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 124 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~--V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~----~I~Gr 124 (770)
...-.||||+|||+.+|+++|+.+|+.||. +..++++.|+.+|.++|||||+|.+.++|..||..|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344679999999999999999999999995 679999999999999999999999999999999999986 59999
Q ss_pred EEEEEEehh
Q 004182 125 ELMLKVDQA 133 (770)
Q Consensus 125 ~L~V~~a~~ 133 (770)
.|.|.|+..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 19
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=6.9e-15 Score=130.22 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 20
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=1.1e-14 Score=133.17 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.++.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 102 a~~ 104 (115)
T 2cpz_A 102 KRS 104 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 21
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.4e-15 Score=131.84 Aligned_cols=83 Identities=20% Similarity=0.401 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 92 a~~ 94 (105)
T 1x5u_A 92 ASA 94 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 865
No 22
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.9e-15 Score=128.31 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 23
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=130.24 Aligned_cols=82 Identities=23% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||. ||+..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4557999999999999999999999999999999999998899999999999999999999999 999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 86 a~~ 88 (99)
T 2dgs_A 86 AEP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 24
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=129.03 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 25
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=8.9e-15 Score=132.55 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 864
No 26
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=128.81 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=131.67 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 864
No 28
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=134.06 Aligned_cols=84 Identities=23% Similarity=0.428 Sum_probs=79.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 102 ~a~~ 105 (108)
T 2jrs_A 102 HVTE 105 (108)
T ss_dssp CSCS
T ss_pred Eccc
Confidence 8764
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.3e-15 Score=130.48 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 89 a~~ 91 (102)
T 2cqb_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.56 E-value=1.9e-14 Score=131.44 Aligned_cols=83 Identities=16% Similarity=0.315 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 92 a~~ 94 (115)
T 2dgo_A 92 ATR 94 (115)
T ss_dssp SSC
T ss_pred ccC
Confidence 865
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=8.7e-15 Score=134.46 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
.++|||||||+.+++.+|+.+|+.||.|.+++++.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999983 55899999999999999999999999999999999998764
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=127.91 Aligned_cols=82 Identities=17% Similarity=0.358 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 93 a~~ 95 (100)
T 2do4_A 93 SNS 95 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 33
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=134.51 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccC-CCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~-~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
....++|||||||+.+++.+|+.+|+.|| |.++.++.++ .+|+++|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34479999999999999999999999999 9999999987 58999999999999999999999 899999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8865
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=131.91 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=129.95 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=8.3e-15 Score=129.20 Aligned_cols=82 Identities=17% Similarity=0.370 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~-kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+ .++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 864
No 37
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=1.8e-14 Score=124.91 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999998899999999999999999999997 688999999999987
Q ss_pred e
Q 004182 131 D 131 (770)
Q Consensus 131 a 131 (770)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.55 E-value=2.2e-15 Score=132.14 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G--~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.+|||||||+.+++++|+.+|+.|| .|.++.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999998899999999999999999999999999999999999999877
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=130.61 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC------CceecCe
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQ 124 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln------g~~I~Gr 124 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3457899999999999999999999999999999999998899999999999999999999999999 9999999
Q ss_pred EEEEEEehh
Q 004182 125 ELMLKVDQA 133 (770)
Q Consensus 125 ~L~V~~a~~ 133 (770)
.|.|.++..
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999998765
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.9e-14 Score=129.64 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457899999999999999999999999999999999996 999999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=129.65 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEecc-CCCCCCcceEEEEecCHHHHHHHHHHh-CCceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d-~~tGk~kGfGFVeF~~~esA~~AL~~L-ng~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +.+|.++|||||+|.+.++|..||..| |+..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 455789999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99865
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=129.24 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..||+..|+|+.|.|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 89 a~~ 91 (102)
T 1x5s_A 89 AGK 91 (102)
T ss_dssp EEC
T ss_pred CCC
Confidence 865
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=127.61 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=76.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 3457899999999999999999999999999999999986 599999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=1.3e-14 Score=130.49 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee---cCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I---~Gr~L~ 127 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..+ +|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999988 899999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998875
No 45
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=9.3e-14 Score=128.76 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4557899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 111 a~~ 113 (124)
T 2kt5_A 111 VAS 113 (124)
T ss_dssp ECC
T ss_pred eCC
Confidence 875
No 46
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=6.7e-14 Score=131.49 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=77.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 47
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=130.65 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCee--------EEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~--------s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|. .+.++.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45579999999999999999999999999999 5999999889999999999999999999999999999999
Q ss_pred CeEEEEEEehh
Q 004182 123 GQELMLKVDQA 133 (770)
Q Consensus 123 Gr~L~V~~a~~ 133 (770)
|+.|.|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999998764
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=124.80 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCC-CcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk-~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..++|||+|||+.+++.+|..+|+.||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876665 8999999999999999999999999999999999988
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.6e-14 Score=125.75 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=75.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34557999999999999999999999999999999999984 3468999999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
|+..
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 50
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=130.74 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||..+++.+|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4557899999999999999999999999999999999883 45899999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 51
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=2e-14 Score=130.98 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..+ +..|+|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999966 599999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 100 ~a~~ 103 (109)
T 2rs2_A 100 VAFP 103 (109)
T ss_dssp ECCC
T ss_pred EccC
Confidence 8764
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=1.6e-14 Score=133.96 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34478999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 99 a~~ 101 (126)
T 3ex7_B 99 CFV 101 (126)
T ss_dssp SEE
T ss_pred ecC
Confidence 864
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=128.31 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCee-EEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE----
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE---- 125 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~-s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~---- 125 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|. .+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34579999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEEehh
Q 004182 126 LMLKVDQA 133 (770)
Q Consensus 126 L~V~~a~~ 133 (770)
|.|.|+..
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 99988764
No 54
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.53 E-value=3.1e-14 Score=127.77 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC---eEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G---r~L~ 127 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457999999999999999999999999999999999996 89999999999999999999999999999998 9999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.|+..
T Consensus 91 V~~a~~ 96 (105)
T 2dnh_A 91 VKFADT 96 (105)
T ss_dssp EEESCS
T ss_pred EEECcc
Confidence 999875
No 55
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=128.02 Aligned_cols=82 Identities=20% Similarity=0.405 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCC---CCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~---tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999998865 5689999999999999999999999999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 98764
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=2.6e-14 Score=124.09 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998764
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=4e-14 Score=126.88 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.|| |..+.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34478999999999999999999999997 999999999889999999999999999999999 7999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 90 a~~ 92 (103)
T 2dng_A 90 AEG 92 (103)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 58
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=136.22 Aligned_cols=82 Identities=17% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE--EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCc----eecCe
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 124 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~----~I~Gr 124 (770)
..+.++|||||||+.+++++|+.+|..||.|.. ++++.++.+|.++|||||+|.+. +|..||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345789999999999999999999999999977 99999988999999999999999 999999999999 99999
Q ss_pred EEEEEEehh
Q 004182 125 ELMLKVDQA 133 (770)
Q Consensus 125 ~L~V~~a~~ 133 (770)
.|.|.++..
T Consensus 99 ~l~V~~a~~ 107 (131)
T 2m2b_A 99 TINVEFAKG 107 (131)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999998875
No 59
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=131.23 Aligned_cols=82 Identities=13% Similarity=0.276 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCe
Q 004182 51 EKPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 124 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~v------te~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr 124 (770)
....++|||||||+.+ +..+|+.+|+.||.|..+.++. .+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3447899999999999 7799999999999999999883 6899999999999999999999999999999998
Q ss_pred -EEEEEEehhh
Q 004182 125 -ELMLKVDQAT 134 (770)
Q Consensus 125 -~L~V~~a~~~ 134 (770)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999988654
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.5e-14 Score=127.50 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCC-CCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~t-Gk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.+.++|||+|||+.+++.+|+.+|..|| |..+.++.++.+ |.++|||||+|.+.++|..|| .||+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3468999999999999999999999999 999999999876 999999999999999999999 8999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 91 a~~ 93 (104)
T 1wi8_A 91 ADQ 93 (104)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.52 E-value=4.1e-14 Score=137.98 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|..+|+.||.|..|.++.++.+|.++|||||+|.+...|..||..|||..|+|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 149 a~~ 151 (165)
T 1rk8_A 149 CFV 151 (165)
T ss_dssp SEE
T ss_pred ecC
Confidence 865
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=131.16 Aligned_cols=82 Identities=15% Similarity=0.318 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999996 999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 83 a~~ 85 (116)
T 2fy1_A 83 AKK 85 (116)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 63
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=126.86 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34568999999999999999999999999999888888888999999999999999999999999999999999999998
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 75
No 64
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.5e-14 Score=128.19 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=77.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..||+ .|+|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345679999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 92 ~a~~ 95 (116)
T 2cqd_A 92 LAYL 95 (116)
T ss_dssp ESTT
T ss_pred Eccc
Confidence 8854
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-13 Score=123.98 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4557999999999999999999999999999999999884 34899999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 90 a~~ 92 (103)
T 2cq3_A 90 ATA 92 (103)
T ss_dssp CCS
T ss_pred ccc
Confidence 865
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=1.9e-14 Score=135.36 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 865
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=129.63 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||||||+.+++++|+.+|+.||.|.++.++.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34468999999999999999999999999999999999965 9999999999999999999999 999999999999987
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=3.4e-14 Score=124.28 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999999874 899999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 83 a~~ 85 (92)
T 2dgv_A 83 DRN 85 (92)
T ss_dssp CSC
T ss_pred cCC
Confidence 865
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=126.95 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445789999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 875
No 70
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=130.18 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999988999999999999999999999996 999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 71
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=7.4e-14 Score=127.13 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4457899999999999999999999999999999999985 799999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 764
No 72
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=2.3e-14 Score=132.60 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 699999999999999876
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.9e-14 Score=123.76 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr----~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
.+.++|||+|||+.+++.+|+ .+|+.||.|.++.++.++.+ +|||||+|.+.++|..||..|||..|+|+.|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 346899999999999999999 99999999999999988544 88999999999999999999999999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 998864
No 74
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.51 E-value=7.1e-14 Score=134.48 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 147 a~~ 149 (158)
T 2kn4_A 147 ARY 149 (158)
T ss_dssp ECC
T ss_pred CCC
Confidence 875
No 75
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-14 Score=127.03 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45579999999999999999999999999999999999988999999999999999999999997 99999999999988
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 764
No 76
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=128.34 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhh-cCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce-ecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~-~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~-I~Gr~L~V 128 (770)
..+.++|||+|||+.+++.+|+.+|+. ||.|..+.++.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345789999999999999999999999 9999999999997 99999999999999999999999999999 99999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 85 ~~a~~ 89 (104)
T 2dhg_A 85 SVAIP 89 (104)
T ss_dssp CBCCC
T ss_pred EEccC
Confidence 88754
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9e-14 Score=121.64 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|+.| .|..+.++.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4557899999999999999999999999 8999999999 799999999999999999999999 999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 865
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.9e-15 Score=126.63 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|+|.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999988654
No 79
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=128.40 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=78.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=123.55 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4557899999999999999999999999999999999998889999999999999999999998 57899999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 865
No 81
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.50 E-value=2e-14 Score=126.46 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
++.++|||+|||+.+++.+|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999998888888889999999999999999999999999999999999999886
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.1e-14 Score=121.00 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
+|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999874
No 83
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=132.39 Aligned_cols=85 Identities=12% Similarity=0.257 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr----~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
..+.++|||||||+.+++++|+ .+|+.||.|..+.+. .+|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3447899999999999998765 799999999998774 368899999999999999999999999999999999
Q ss_pred EEEEehhhHHHH
Q 004182 127 MLKVDQATREYL 138 (770)
Q Consensus 127 ~V~~a~~~k~~l 138 (770)
.|.|+......+
T Consensus 103 ~V~~a~~~~~~~ 114 (127)
T 2a3j_A 103 VITFSETPQSQV 114 (127)
T ss_dssp EEEECCCCCHHH
T ss_pred EEEEccCcchhc
Confidence 999998654433
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=9.2e-14 Score=133.87 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|..+|+.||.|..|.++.++.++.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 875
No 85
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-13 Score=123.00 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++++|+.+|+.||.|..+.+.. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999855 456899999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 96 a~~ 98 (109)
T 1x4a_A 96 PRS 98 (109)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2e-14 Score=121.51 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..++ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999999899 9999999999886
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.1e-14 Score=127.68 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCe-eEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V-~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..+.++|||+|||+.+++.+|+.+|..||.| ..+.++.++ +|.++|||||+|.+.++|..||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3457899999999999999999999999999 899999996 999999999999999999999995 9999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9865
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.5e-14 Score=126.49 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEe-ccCCCCCCcceEEEEecCHHHHHHHHHHhC--CceecCeEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQEL 126 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s~kiv-~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln--g~~I~Gr~L 126 (770)
..+.++|||+|||+.+++++|+.+|..||. |..+.++ .+..+|.++|||||+|.+.++|..||..|| ++.|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 777889999999999999999999999996 599999999
Q ss_pred EEEEehh
Q 004182 127 MLKVDQA 133 (770)
Q Consensus 127 ~V~~a~~ 133 (770)
.|.|+..
T Consensus 85 ~V~~a~~ 91 (109)
T 2dis_A 85 AVDWAEP 91 (109)
T ss_dssp EEEESCS
T ss_pred EEEEcCC
Confidence 9999865
No 89
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=9.7e-14 Score=128.24 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~---V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
....++|||+|||+.+++++|+.+|+.||. |..+.++.++ +|+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999998 8999999986 49999999999999999999999 999999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998864
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.6e-13 Score=120.89 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..+.-||||||++.++++.|+.+|..||+|.+++++. ++|||||+|.+.++|..|+..||+..|+|++|.|+++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3467899999999999999999999999999999865 5799999999999999999999999999999999998
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-14 Score=129.27 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999888 666776789999999999999999999999 999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 92 a~~ 94 (101)
T 1fj7_A 92 PKG 94 (101)
T ss_dssp CSC
T ss_pred cCC
Confidence 764
No 92
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=124.40 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee--------c
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I--------~ 122 (770)
..+.++|||+|||+.+++.+|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4457899999999999999999999999999999999996 999999999999999999999999999999 5
Q ss_pred CeEEEEEEehh
Q 004182 123 GQELMLKVDQA 133 (770)
Q Consensus 123 Gr~L~V~~a~~ 133 (770)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899998864
No 93
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.2e-13 Score=129.60 Aligned_cols=89 Identities=12% Similarity=0.222 Sum_probs=77.8
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecC----HHH----HHHHHH--HhCCce
Q 004182 55 TKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKFN 120 (770)
Q Consensus 55 ~tVfVgNL----p~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~----~es----A~~AL~--~Lng~~ 120 (770)
+.|||||| |+.+++..|+.+|+.||.|.++.++.|+.||.++|||||+|.+ +.. |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 433 788887 789999
Q ss_pred ecCeEEEEEEehhh--HHHHHHHHH
Q 004182 121 IDGQELMLKVDQAT--REYLERYVD 143 (770)
Q Consensus 121 I~Gr~L~V~~a~~~--k~~le~~k~ 143 (770)
|+|+.|+|.++... ...++....
T Consensus 83 I~Gr~irV~ln~~g~~~~~~~~~i~ 107 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNIISKFVE 107 (136)
T ss_dssp ETTEEEEEEECCTTHHHHHHHHHHH
T ss_pred ecCcEEEEEECcccHHHHHHHHHHH
Confidence 99999999998765 445555554
No 94
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=5.9e-14 Score=123.96 Aligned_cols=82 Identities=13% Similarity=0.299 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr----~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
.++.++|||+|||..+++.+|+ .+|+.||.|..+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4557899999999999999999 9999999999998874 57888999999999999999999999999999999
Q ss_pred EEEEehhhH
Q 004182 127 MLKVDQATR 135 (770)
Q Consensus 127 ~V~~a~~~k 135 (770)
.|.|+....
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987643
No 95
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.47 E-value=1.5e-14 Score=126.14 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=73.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehhh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 134 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~~ 134 (770)
++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999998764
No 96
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6e-14 Score=130.30 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999886666666799999999999999999999999 999999999999999
Q ss_pred ehhh
Q 004182 131 DQAT 134 (770)
Q Consensus 131 a~~~ 134 (770)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8763
No 97
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.47 E-value=1.3e-13 Score=125.72 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|..+|+.||.|.++.++.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34689999999999999999999999999999999865 566999999999999999999999999999999999999
Q ss_pred hhhH
Q 004182 132 QATR 135 (770)
Q Consensus 132 ~~~k 135 (770)
....
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8643
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=5e-14 Score=145.14 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcC--CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G--~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..++|||+||++.+++.+|+.+|+.|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ehhh
Q 004182 131 DQAT 134 (770)
Q Consensus 131 a~~~ 134 (770)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=2e-13 Score=121.72 Aligned_cols=75 Identities=16% Similarity=0.386 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.++.++|||||||+ .+++.+|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 44578999999998 99999999999999999999883 5899999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9864
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.4e-13 Score=122.71 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||||||..+++.+|+.+|+.||.|.++.++. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999999873 4699999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 101
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=4.3e-14 Score=121.31 Aligned_cols=73 Identities=15% Similarity=0.334 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCe-EE
Q 004182 54 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 126 (770)
Q Consensus 54 ~~tVfVgNLp~~v------te~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr-~L 126 (770)
.++|||||||..+ +..+|+.+|+.||.|.++.++. .+|.++|||||+|.+.++|..||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 6799999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EE
Q 004182 127 ML 128 (770)
Q Consensus 127 ~V 128 (770)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 102
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.9e-13 Score=124.45 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||||||+.+++.+|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999987 5899999999999999999999999999999999
Q ss_pred Eehhh
Q 004182 130 VDQAT 134 (770)
Q Consensus 130 ~a~~~ 134 (770)
|+...
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 98653
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.2e-14 Score=127.38 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999843322222237899999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 103 ~~ 104 (115)
T 2cpx_A 103 KN 104 (115)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 104
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=8.1e-13 Score=138.27 Aligned_cols=78 Identities=12% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-CeEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr~L~V 128 (770)
...+.++|||+|||..+++.+|+.+|+.||.|..+.++.+. +|||||+|.+.++|..||..|||..|+ |+.|.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998652 589999999999999999999999999 999999
Q ss_pred EEeh
Q 004182 129 KVDQ 132 (770)
Q Consensus 129 ~~a~ 132 (770)
.|+.
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9975
No 105
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.45 E-value=6e-14 Score=118.03 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 56 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 56 tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
+|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998889999999999999999999999 5999999999999875
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5.4e-13 Score=120.90 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC-----eEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 126 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G-----r~L 126 (770)
...++|||+|||+.+++.+|+.+|..||.|..+.++.+ |||||+|.+.++|..||..|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 44789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEEehh
Q 004182 127 MLKVDQA 133 (770)
Q Consensus 127 ~V~~a~~ 133 (770)
.|.++..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998865
No 107
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=126.00 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHHhhcCCeeEEEEeccCCCC---CCcceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 52 KPQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr---~lFs~~G~V~s~kiv~d~~tG---k~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
...++|||+|||+.+++++|. .+|+.||.|..+.++.+..++ .++|||||+|.+.++|..||..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999999886544 56699999999999999999999999999999
Q ss_pred EEEEEehh
Q 004182 126 LMLKVDQA 133 (770)
Q Consensus 126 L~V~~a~~ 133 (770)
|.|.|+..
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99998765
No 108
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=5.2e-13 Score=132.29 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999996 99999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004182 130 VDQAT 134 (770)
Q Consensus 130 ~a~~~ 134 (770)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=124.43 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC--CceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln--g~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++++|+.+|+.||.|.++.++.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 445789999999999999999999999999999999875 5999999999999999999886 47899999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 98764
No 110
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=119.98 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|..||.| .++.+ .+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4457999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 111
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=122.90 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE-EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s-~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
....++|||+|||+.+++.+|+.+|..||.|.. +.++.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999987 888888 7999999999999999999999996 9999999999998
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 7653
No 112
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2.6e-13 Score=137.12 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.+||||||||+.+++.+|+.+|+.||.|.+++++.++.+|.++|||||+|.+.++|..||..||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.44 E-value=7.1e-14 Score=132.36 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 124 a~~ 126 (135)
T 2lea_A 124 ARY 126 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.8e-13 Score=120.35 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh--CCceecCeEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELM 127 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L--ng~~I~Gr~L~ 127 (770)
...+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..| ++..|+|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3455789999999999999999999999999999988765 699999999999999999876 57889999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.|+..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999864
No 115
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=4.2e-13 Score=119.70 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.|+ .+.++.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34578999999999999999999999774 677778878999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5e-13 Score=115.09 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh-CCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L-ng~~I~Gr~L~V~ 129 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 445789999999999999999999999999999999874 589999999999999999988 9999999999999
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
|+
T Consensus 83 ~a 84 (85)
T 2ytc_A 83 WG 84 (85)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=9.7e-14 Score=125.74 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~---V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
....++|||+|||+.+++.+|+.+|+.||. |..+.++.++. |.++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456799999999999999999999999998 89999999965 9999999999999999999999 999999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998765
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.3e-13 Score=120.89 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||..+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 445789999999999999999999999999999999876 58999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 96 a~~ 98 (109)
T 1x4g_A 96 GKE 98 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.42 E-value=5.4e-13 Score=120.52 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce--ecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~--I~Gr~L~V 128 (770)
.++.++|||+|||+.+++++|..+|+.||.|.++.++.+ +|||||+|.+.++|..||..|++.. |+|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 446789999999999999999999999999999998753 5899999999999999999998875 78999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99865
No 120
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.42 E-value=4.4e-13 Score=123.22 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...++|||+|||+.+++.+|+.+|+.|| .|..+.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3468999999999999999999999999 899998854 35789999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 121
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=9.2e-13 Score=125.53 Aligned_cols=82 Identities=17% Similarity=0.319 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred eh
Q 004182 131 DQ 132 (770)
Q Consensus 131 a~ 132 (770)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 75
No 122
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=116.58 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4457899999999999999999999999999999987 47999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.2e-13 Score=118.40 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++.+|+.+|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999996 66654 468899999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=115.17 Aligned_cols=75 Identities=24% Similarity=0.426 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45579999999999999999999999999999999874 3999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 79 a~~ 81 (92)
T 2dgt_A 79 STS 81 (92)
T ss_dssp SSC
T ss_pred ccC
Confidence 864
No 125
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=8.9e-13 Score=116.76 Aligned_cols=76 Identities=16% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec--CeEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~--Gr~L~V~ 129 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34689999999999999999999999999999988754 589999999999999999999999999 9999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
|+..
T Consensus 89 ~a~~ 92 (97)
T 1why_A 89 FAKS 92 (97)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 126
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.41 E-value=3e-13 Score=128.75 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC---eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~---V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
....++|||+|||+.+|+++|+.+|+.||. |..+.++.++. |+++|||||+|.+.++|..||. ||+..|+|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 455789999999999999999999999999 89999999964 9999999999999999999999 999999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.1e-13 Score=123.03 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++++|+++|..|| +..+.++.++ +|+++|||||+|.+.++|..||. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4468999999999999999999999999 4599999996 99999999999999999999996 8999999999999876
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 128
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=7.4e-14 Score=132.60 Aligned_cols=84 Identities=15% Similarity=0.242 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEE--Eecc---CCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQY---PSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~k--iv~d---~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+. ++.+ ..+|.++|||||+|.+.++|..||..|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44578999999999999999999999999988751 1111 247999999999999999999999999999999999
Q ss_pred EEEEEehhh
Q 004182 126 LMLKVDQAT 134 (770)
Q Consensus 126 L~V~~a~~~ 134 (770)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998753
No 129
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=1.8e-13 Score=122.23 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++.+|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|..||. ++..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999997 99999999999999999999999 999999999999988
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
...
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 754
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7.8e-13 Score=121.12 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.+++.+|+++|+.| .|..+.|+.++ +|+++|||||+|.+.++|..|| .||+..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35899999999999999999999999 89999999995 5999999999999999999999 599999999999998775
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=120.17 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4457999999999999999999999999988765 25789999999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 132
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4e-13 Score=121.74 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCC--ceecCeEEEE
Q 004182 52 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 128 (770)
Q Consensus 52 ~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng--~~I~Gr~L~V 128 (770)
.+.++|||+|||+ .+++.+|+.+|..||.|.++.++.++ |||||+|.+.++|..||..||+ ..|+|+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 99999999999999999999998753 8999999999999999998885 4699999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99875
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=1.1e-12 Score=125.15 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 81 ~ 81 (167)
T 1fxl_A 81 P 81 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=116.82 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345789999999999999999999999999999998764 58999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 86 a~~ 88 (99)
T 2cpj_A 86 ACH 88 (99)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 135
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.2e-13 Score=123.41 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC--CceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln--g~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999876 5999999999999999999887 46899999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 102 ~~a~~ 106 (119)
T 2ad9_A 102 QFSNH 106 (119)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=113.64 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 44578999999999999999999999999999999874 3999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.08 E-value=3.7e-14 Score=129.93 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeE--------EEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s--------~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999999998 889998888999999999999999999999999999999
Q ss_pred CeEEEEEEehh
Q 004182 123 GQELMLKVDQA 133 (770)
Q Consensus 123 Gr~L~V~~a~~ 133 (770)
|+.|.|.++..
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999998765
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.38 E-value=9.8e-13 Score=125.83 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||||||+.+++.+|+.+|+.||.|.++.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455799999999999999999999999999999999876 579999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 139
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.1e-12 Score=125.63 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||+.+++.+|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.38 E-value=2e-12 Score=117.22 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~-vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...++|||+|||+. +++++|+.+|+.||.|..+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999988 458999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.1e-13 Score=122.06 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++.+|+.+|+.||.|..+.++. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998864 4589999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 142
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=4.6e-13 Score=119.35 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
++|||+|||+.+++.+|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999876 779999999999999999999999999999999998875
No 143
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.37 E-value=2.2e-12 Score=115.59 Aligned_cols=74 Identities=15% Similarity=0.404 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|+.+|..||.|..+.++. +||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4578999999999999999999999999999999874 59999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=115.74 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEE-EEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~-kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
...++|||+|||+.+++.+|+.+|+.||.|..+ .++.++.+| +|||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446899999999999999999999999999999 487775443 399999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 865
No 145
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.6e-12 Score=125.17 Aligned_cols=80 Identities=21% Similarity=0.439 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999986
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5e-12 Score=112.31 Aligned_cols=75 Identities=17% Similarity=0.374 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhc--CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~--G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++.+|+.+|+.| |.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 999998875 369999999999999999999999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 84 ~~a~~ 88 (99)
T 2cpd_A 84 TLAKP 88 (99)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 98865
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2e-12 Score=117.39 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCC--ceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng--~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|++ ..|+|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999999999988764 58999999999999999998865 4599999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 148
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2.1e-12 Score=118.98 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC--CceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln--g~~I~Gr~L~ 127 (770)
..+.++|||+|||+. +++.+|+.+|..||.|.++.++.. +|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999999753 5999999999999999999885 5669999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999864
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.1e-12 Score=116.16 Aligned_cols=75 Identities=17% Similarity=0.407 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.++.++|||+|||+ .+++.+|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999999 99999999999999999999884 4899999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 9865
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=4.9e-12 Score=124.56 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999977999999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.34 E-value=2.3e-12 Score=126.69 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++.+|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeec
Confidence 4457899999999999999999999999999999999998899999999999999999999998 599999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 89 ~~~ 91 (196)
T 1l3k_A 89 AVS 91 (196)
T ss_dssp CCC
T ss_pred ccC
Confidence 765
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.2e-12 Score=113.25 Aligned_cols=76 Identities=14% Similarity=0.329 Sum_probs=67.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCC-eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCC-ceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~-V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng-~~I~Gr~L~V 128 (770)
..+.++|||+|||+.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345789999999999999999999999999 5555552 358999999999999999999999 9999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.++..
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 153
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=113.44 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++.+|+.+|+.||.|..+ +.++.+|. ||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 55545665 99999999999999999 9999999999999765
Q ss_pred h
Q 004182 132 Q 132 (770)
Q Consensus 132 ~ 132 (770)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=2.9e-12 Score=127.96 Aligned_cols=82 Identities=29% Similarity=0.497 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||..+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=8.8e-12 Score=110.45 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|| .+++.+|+.+|..||.|..+.+. .++|||||+|.+.++|..||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345789999996 89999999999999999999884 4668999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 84 a~~ 86 (97)
T 1x5p_A 84 ARK 86 (97)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 156
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.32 E-value=2.9e-12 Score=111.65 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
...++|||+|||+.+++.+|+.+|+.| .|..+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999884 56799999999999999999999999999999999987
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.31 E-value=5.5e-12 Score=127.42 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.+++.+|+.+|+.||.|..+.++.+ .+.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4578999999999999999999999999999999988 35579999999999999999999999999999999999987
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 158
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.31 E-value=2.2e-12 Score=121.24 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCee--EEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~--s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...++|||+|||+.+++++|+.+|+.| .|. .+.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 456889999999999999999999999 576 899999964 9999999999999999999998 58899999999998
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7753
No 159
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=117.14 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCC---CCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~t---Gk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
....++|||||||+.+++.+|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888887666 7999999999999999999999885 47888888
Q ss_pred EEEe
Q 004182 128 LKVD 131 (770)
Q Consensus 128 V~~a 131 (770)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7643
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.31 E-value=6.8e-12 Score=110.18 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce--ecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~--I~Gr~L~V 128 (770)
..+.++|||||||+.+++++|+.+|+.||.|.++.++.+ ++|||||+|.+.++|.. |+|.. ++|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 445789999999999999999999999999999999874 78999999999999873 55555 45999999
Q ss_pred EEehhh
Q 004182 129 KVDQAT 134 (770)
Q Consensus 129 ~~a~~~ 134 (770)
.++...
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 988754
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=120.78 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCe----eEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V----~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
...++|||+|||+.+++++|+.+|+.||.| ..+.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999975 68999988 5999999999999999999999994 99999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987753
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=2.2e-12 Score=123.67 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||+.+++.+|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999998 99999999999999986
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.29 E-value=6.2e-12 Score=123.63 Aligned_cols=82 Identities=15% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+..+|.++|||||.|.+.++|.+||.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3468999999999999999999999999999999999988999999999999999999999984 899999999999998
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
...
T Consensus 181 ~~k 183 (196)
T 1l3k_A 181 LSK 183 (196)
T ss_dssp C--
T ss_pred CCh
Confidence 764
No 164
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=7.7e-12 Score=119.73 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC--eEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G--r~L~V 128 (770)
..+.++|||+|||..+++.+|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+| +.|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3457899999999999999999999999999999999997799999999999999999999999999999987 99999
Q ss_pred EEe
Q 004182 129 KVD 131 (770)
Q Consensus 129 ~~a 131 (770)
.|+
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.29 E-value=2.7e-12 Score=117.91 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE-----EE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 127 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~-----L~ 127 (770)
..++|||+|||+.+++++|+.+|..||.|..+.++.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999875 89999999999999999999999999988 66
Q ss_pred EEEeh
Q 004182 128 LKVDQ 132 (770)
Q Consensus 128 V~~a~ 132 (770)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65443
No 166
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=6.3e-12 Score=119.72 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
++|||+|||+.+++.+|+.+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999984 788999999999999999999999999999999999998754
No 167
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.28 E-value=1.1e-12 Score=125.18 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
....++|||+|||+.+++++|+++|+.|| |..+.|+.++ +|+++|||||+|.+.++|..|| .+|+..|+|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 7799999996 5999999999999999999999 6999999999999987
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 120 a~~ 122 (139)
T 2hgn_A 120 NST 122 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.28 E-value=6.4e-12 Score=125.43 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||.|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred hh
Q 004182 133 AT 134 (770)
Q Consensus 133 ~~ 134 (770)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=8.2e-12 Score=107.76 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=65.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~----G-------~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~ 120 (770)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999988754 599999999999999999 899999
Q ss_pred ecCeEEEEE
Q 004182 121 IDGQELMLK 129 (770)
Q Consensus 121 I~Gr~L~V~ 129 (770)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999986
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=9.9e-12 Score=114.84 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee-----cCe
Q 004182 52 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 124 (770)
Q Consensus 52 ~~~~tVfV--gNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I-----~Gr 124 (770)
.+.++||| |||++.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 44688999 889999999999999999999999887643 58999999999999999999999998 689
Q ss_pred EEEEEEehh
Q 004182 125 ELMLKVDQA 133 (770)
Q Consensus 125 ~L~V~~a~~ 133 (770)
.|.|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999998764
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.27 E-value=1.1e-11 Score=125.27 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 52 KPQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 52 ~~~~tVfVgNLp-~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
.+.++|||+||| +.+++++|..+|+.||.|.+++++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 457899999999 89999999999999999999999875 369999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 754
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.27 E-value=1e-11 Score=118.36 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE--EEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~--L~V~ 129 (770)
...++|||+|||..+++.+|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 34689999999999999999999999999999999998789999999999999999999999999999999965 7777
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
|+
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.26 E-value=7.9e-12 Score=120.28 Aligned_cols=80 Identities=13% Similarity=0.303 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec---CeEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELML 128 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~---Gr~L~V 128 (770)
...++|||+|||+.+++.+|+.+|+.||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..|||..+. |+.|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 35789999999999999999999999999999999998 47999999999999999999999999998776 499999
Q ss_pred EEeh
Q 004182 129 KVDQ 132 (770)
Q Consensus 129 ~~a~ 132 (770)
.|++
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.25 E-value=1.1e-11 Score=118.78 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
+.++|||+|||+.+++.+|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999998899999999999999999999998 4678999999998876
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=110.26 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=63.5
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHHhhc-CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 54 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 54 ~~t-VfVgNLp~~vte~~----Lr~lFs~~-G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
..| |||+|||+.++.+. |..+|+.| |.|..+ +| |||||.|.+.++|.+|+..|||..|.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999887 66899999 599887 33 9999999999999999999999999999999
Q ss_pred EEEehhh
Q 004182 128 LKVDQAT 134 (770)
Q Consensus 128 V~~a~~~ 134 (770)
|.++...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9988753
No 176
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.25 E-value=1.5e-11 Score=120.42 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC--eEEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLK 129 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G--r~L~V~ 129 (770)
....+|||+||++.+++++|+.+|+.||.|.++.+... .++|||||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34578999999999999999999999999999998653 357899999999999999999999999965 999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
|+..
T Consensus 120 ~Ak~ 123 (164)
T 1sjr_A 120 FSKL 123 (164)
T ss_dssp ECSS
T ss_pred EecC
Confidence 8875
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.25 E-value=3e-11 Score=109.76 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHhhcCCeeEEEEeccCC-CCCCcceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 52 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 52 ~~~~tVfVgNLp~-----~vte~~Lr~lFs~~G~V~s~kiv~d~~-tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
.++++|+|.||.. ..+..+|+.+|++||.|.++.++.++. ++.++|||||+|.+.++|..|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578999999973 236789999999999999999998864 4689999999999999999999999999999999
Q ss_pred EEEEEehh
Q 004182 126 LMLKVDQA 133 (770)
Q Consensus 126 L~V~~a~~ 133 (770)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.24 E-value=2.5e-11 Score=114.59 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcce-EEEEecCHHHHHHHHHHhCCceecC--eEEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELML 128 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGf-GFVeF~~~esA~~AL~~Lng~~I~G--r~L~V 128 (770)
.....|||+||++.++++.|..+|+.||.|.++.++.. .+|| |||+|.+..+|..|+..|||..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34567999999999999999999999999999988764 2577 9999999999999999999999988 99999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 98875
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.24 E-value=2.6e-11 Score=126.84 Aligned_cols=84 Identities=13% Similarity=0.305 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 125 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr----~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~ 125 (770)
...+.++|||+|||+.+++++|+ .+|+.||.|..+.++. +|+++|||||+|.+.++|..||..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999966 8999999999998875 7889999999999999999999999999999999
Q ss_pred EEEEEehhhHH
Q 004182 126 LMLKVDQATRE 136 (770)
Q Consensus 126 L~V~~a~~~k~ 136 (770)
|.|.|+.....
T Consensus 82 l~v~~a~~~~~ 92 (282)
T 3pgw_A 82 MRIQYAKTDSD 92 (282)
T ss_pred EEEEEeccCcc
Confidence 99999866443
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.23 E-value=5.4e-11 Score=111.51 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=66.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcce-EEEEecCHHHHHHHHHHhCCceecC--eEEEEEE
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 130 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGf-GFVeF~~~esA~~AL~~Lng~~I~G--r~L~V~~ 130 (770)
...|||+||++.++++.|..+|+.||.|..+.++.. . || |||+|.+..+|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 1 76 9999999999999999999999987 6899988
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 99 Ak~ 101 (124)
T 2e5i_A 99 ARP 101 (124)
T ss_dssp CSC
T ss_pred ecC
Confidence 765
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.23 E-value=1.8e-11 Score=117.81 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCC--CCcceEEEEecCHHHHHHHHHHhCCceec---CeEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 127 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tG--k~kGfGFVeF~~~esA~~AL~~Lng~~I~---Gr~L~ 127 (770)
..++|||+|||+.+++.+|+.+|+.||.|.++.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999997666 89999999999999999999999998776 67777
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
+.++..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 766543
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.22 E-value=1.8e-11 Score=113.76 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||||+ .+++.+|+.+|+.||.|..+.+. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999885 46699999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 109 ~~ 110 (121)
T 2bz2_A 109 RK 110 (121)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=2.2e-11 Score=122.14 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
..++|||+|||+.++..+|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999984 7999999999999999999999855 569999999998765
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.20 E-value=3.7e-11 Score=116.30 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||+|||+.+++.+|+.+|+.||.|..+ ..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3457899999999999999999999999988766 36899999999999999999999999999999999999999
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 185
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.5e-11 Score=106.78 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=63.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..|+. .++.++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999998764 67999999999999975432 234568999999877
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.19 E-value=3.2e-11 Score=123.12 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
.++.++|||+|||+ .+++.+|+.+|+.||.|..+.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34578999999999 99999999999999999999998873 7899999999999999999999999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 106 ~a~~ 109 (229)
T 2adc_A 106 LSKH 109 (229)
T ss_dssp CCSC
T ss_pred EecC
Confidence 8864
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.18 E-value=6.6e-11 Score=123.85 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
+..++|||+|||+.+++.+|..+|+.||.|..+.++.++.+|.++|||||.|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 004182 132 QA 133 (770)
Q Consensus 132 ~~ 133 (770)
..
T Consensus 173 ~~ 174 (284)
T 3smz_A 173 DA 174 (284)
T ss_dssp CG
T ss_pred CC
Confidence 65
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=4.4e-11 Score=125.68 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeccCC-CCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 004182 51 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~-vte~~Lr~lFs~~G~V~s~kiv~d~~-tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V 128 (770)
..+.++|||+|||+. +++.+|+.+|+.||.|..+.++.+.. ||.++|||||.|.+.++|.+|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 445789999999999 99999999999999999999999864 5999999999999999999999 99999999999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.14 E-value=8.7e-11 Score=122.95 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCC-CHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 51 EKPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~v-te~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
..+.++|||+|||+.+ ++++|+.+|+.||.|.++.++.+. +|.++|||||.|.+.++|..|+..|||..|+|+.|.|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3457899999999995 999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred Eehhh
Q 004182 130 VDQAT 134 (770)
Q Consensus 130 ~a~~~ 134 (770)
|+...
T Consensus 260 ~a~~~ 264 (284)
T 3smz_A 260 FCAPG 264 (284)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 98764
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.14 E-value=1.9e-11 Score=118.33 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 50 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
...+.++|||+|||+.+++++|+.+|..||.+.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3456899999999999999999999999998766 334444688999999999999999999995 99999999999999
Q ss_pred Eehh
Q 004182 130 VDQA 133 (770)
Q Consensus 130 ~a~~ 133 (770)
++..
T Consensus 87 ~~~~ 90 (175)
T 1fje_B 87 KPKG 90 (175)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8765
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.13 E-value=8.2e-11 Score=118.92 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCe--eEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCe----E
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 125 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V--~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr----~ 125 (770)
++.++|||+|||+.+++++|+.+|+.||.| .+++++.+. |..+|||||+|.+.++|..||..|||..|+|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 457899999999999999999999999999 899988873 66679999999999999999999999999876 6
Q ss_pred EEEEEe
Q 004182 126 LMLKVD 131 (770)
Q Consensus 126 L~V~~a 131 (770)
+.|+|+
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.12 E-value=7.3e-11 Score=122.42 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=71.1
Q ss_pred CCCCCCEEEEcCCCCCC---------CHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce
Q 004182 50 AEKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~v---------te~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~ 120 (770)
.....++||||||+..+ ++..|+.+|+.||.|.++.|+.+ +|||||+|.+.++|..|+..|||..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35568999999999998 79999999999999999999864 5999999999999999999999999
Q ss_pred e------------cCeEEEEEEehhh
Q 004182 121 I------------DGQELMLKVDQAT 134 (770)
Q Consensus 121 I------------~Gr~L~V~~a~~~ 134 (770)
| +|+.|.|.|+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 9 8999999999754
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=2.1e-10 Score=119.47 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 130 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~ 130 (770)
..+.++|||||||+.+++.+|+.+|+.||.|..+.+..+ +|||||.|.+.++|..||..|||..|+|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 445789999999999999999999999999999998654 59999999999999999999999999999999998
Q ss_pred ehh
Q 004182 131 DQA 133 (770)
Q Consensus 131 a~~ 133 (770)
+..
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.10 E-value=8.7e-11 Score=116.26 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=70.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEeh
Q 004182 54 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 132 (770)
Q Consensus 54 ~~tVfVgNLp~-~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~ 132 (770)
.++|||+|||+ .+++.+|+.+|+.||.|..+.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998873 6899999999999999999999999999999999987
Q ss_pred h
Q 004182 133 A 133 (770)
Q Consensus 133 ~ 133 (770)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.08 E-value=2.6e-10 Score=112.78 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-CeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr~L~V 128 (770)
.++.++|||+|||..+++.+|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999999 9999998764 2689999999999999999999999999 999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 192 ~~a~~ 196 (198)
T 1qm9_A 192 SFSKS 196 (198)
T ss_dssp EEECC
T ss_pred Eeecc
Confidence 99864
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.4e-10 Score=104.25 Aligned_cols=78 Identities=12% Similarity=0.136 Sum_probs=67.7
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce
Q 004182 52 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vt-----------e~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~ 120 (770)
.+.++|+|.||..... +++|+.+|+.||.|..+.| .+. .++|||||+|.+.++|..||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4578999999955433 4799999999999999965 442 379999999999999999999999999
Q ss_pred ecCeEEEEEEehh
Q 004182 121 IDGQELMLKVDQA 133 (770)
Q Consensus 121 I~Gr~L~V~~a~~ 133 (770)
|+|+.|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999865
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.06 E-value=2.8e-10 Score=119.60 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEe
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 131 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a 131 (770)
..++|||+|||+.+++.+|..+|+.|| .|..+.++.+. .|.++|||||.|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999999884 5889999999999999999999999999999999999998
Q ss_pred hhh
Q 004182 132 QAT 134 (770)
Q Consensus 132 ~~~ 134 (770)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.05 E-value=5.6e-10 Score=101.30 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCC--CCC--------HHHHHHHHhhcCCeeEEEEeccCCC--CCCcceEEEEecCHHHHHHHHHHhCCc
Q 004182 52 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 119 (770)
Q Consensus 52 ~~~~tVfVgNLp~--~vt--------e~~Lr~lFs~~G~V~s~kiv~d~~t--Gk~kGfGFVeF~~~esA~~AL~~Lng~ 119 (770)
.+++.|.+.|+-. .+. .++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4578899999843 232 3689999999999999999988643 468999999999999999999999999
Q ss_pred eecCeEEEEEEehh
Q 004182 120 NIDGQELMLKVDQA 133 (770)
Q Consensus 120 ~I~Gr~L~V~~a~~ 133 (770)
.++|+.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999765
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.04 E-value=3.9e-10 Score=117.39 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC-Cceec---CeEEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-KFNID---GQELM 127 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln-g~~I~---Gr~L~ 127 (770)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.+ .+|.++|||||+|.+.++|..||..|| +..+. ++.|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 699999999999999999999999994 55554 99999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|.++..
T Consensus 173 v~~~~~ 178 (261)
T 3sde_A 173 VEPMEQ 178 (261)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 988764
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=1.8e-10 Score=104.38 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=64.4
Q ss_pred EcCCCCCCCHHHHHHHH------------hhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 59 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 59 VgNLp~~vte~~Lr~lF------------s~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
++||+..+++.+|+.+| ++||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 999999999999884 68999999999999999999999999999999999
Q ss_pred EEEEe
Q 004182 127 MLKVD 131 (770)
Q Consensus 127 ~V~~a 131 (770)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.01 E-value=6.3e-10 Score=113.52 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhhcC-CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec-CeEEEE
Q 004182 51 EKPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 128 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~vte~~Lr~lFs~~G-~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~-Gr~L~V 128 (770)
.++.++|||+|||+.+++.+|+.+|+.|| .|..+.++.. .+|||||+|.+.++|..||..|||..|+ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34579999999999999999999999999 9999998653 3689999999999999999999999999 999999
Q ss_pred EEehh
Q 004182 129 KVDQA 133 (770)
Q Consensus 129 ~~a~~ 133 (770)
.|+..
T Consensus 223 ~~a~~ 227 (229)
T 2adc_A 223 SFSKS 227 (229)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99864
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=9.6e-10 Score=102.04 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCC-----CCHHHHHHHHhhcCCeeEEEEeccCC----CCCCcceEEEEecCHHHHHHHHHHhCCceecC
Q 004182 53 PQTKVYVGKIAPT-----ADSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (770)
Q Consensus 53 ~~~tVfVgNLp~~-----vte~~Lr~lFs~~G~V~s~kiv~d~~----tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G 123 (770)
++++|++.|+-.. -..++|+..|++||.|.++.|+.++. ++.++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5788999998532 23579999999999999999998753 45678999999999999999999999999999
Q ss_pred eEEEEEEehh
Q 004182 124 QELMLKVDQA 133 (770)
Q Consensus 124 r~L~V~~a~~ 133 (770)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999875
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.98 E-value=8.5e-10 Score=106.01 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~----G-------~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I 121 (770)
+.++|||+|||+.+++++|+.+|+.| | .|..+.+. .++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666654 34699999999999999999 7999999
Q ss_pred cCeEEEEEEeh
Q 004182 122 DGQELMLKVDQ 132 (770)
Q Consensus 122 ~Gr~L~V~~a~ 132 (770)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998654
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.97 E-value=1.1e-09 Score=107.54 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhc----C-------CeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~----G-------~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I 121 (770)
..++|||+|||+.+++++|..+|+.| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 456799999999999999999 7999999
Q ss_pred cCeEEEEEEehh
Q 004182 122 DGQELMLKVDQA 133 (770)
Q Consensus 122 ~Gr~L~V~~a~~ 133 (770)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999987654
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.81 E-value=7.6e-09 Score=112.62 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=65.5
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec---Ce
Q 004182 50 AEKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ 124 (770)
Q Consensus 50 ~~~~~~tVfVgN--Lp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~---Gr 124 (770)
...+..+||||| |++.+++++|+++|+.||.|.++.+.. ++|||||+|.+.++|..||..|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 355678999999 588999999999999999999887643 4689999999999999999999999883 44
Q ss_pred --EEEEEEeh
Q 004182 125 --ELMLKVDQ 132 (770)
Q Consensus 125 --~L~V~~a~ 132 (770)
.|.|.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=3.2e-08 Score=92.21 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=76.8
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecC-HHHHHHHHHHhC--CceecCeE
Q 004182 50 AEKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQE 125 (770)
Q Consensus 50 ~~~~~~tVfVgNLp~~-vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~-~esA~~AL~~Ln--g~~I~Gr~ 125 (770)
.-++.+.|||+||+.. ++..+|+.+|+.||.|..|.++.+. .+|||.|.+ +.+|..|+..|| ++.|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456899999999999 9999999999999999999998875 369999999 899999999994 78899988
Q ss_pred EEEEEehh--hHHHHHHHHHhh
Q 004182 126 LMLKVDQA--TREYLERYVDKK 145 (770)
Q Consensus 126 L~V~~a~~--~k~~le~~k~kk 145 (770)
+.+.+... -+.|+.+..+.+
T Consensus 88 ~~~evL~GeeE~~yw~Ki~ed~ 109 (121)
T 1owx_A 88 VTWEVLEGEVEKEALKKIIEDQ 109 (121)
T ss_dssp EEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHH
Confidence 88887654 477887776543
No 207
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.8e-08 Score=89.54 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 64 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 64 ~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
..+++.+|+.+|+.||.|..+.++ +.++|||||+|.+.++|..||..+++ +.|+.|.|.|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 568999999999999999999987 46889999999999999999997555 6799999998764
No 208
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.74 E-value=4.6e-08 Score=90.14 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=67.3
Q ss_pred CCEEEEcCCCCCCC----------HHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC
Q 004182 54 QTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 123 (770)
Q Consensus 54 ~~tVfVgNLp~~vt----------e~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G 123 (770)
++.|.+.|+-.... .++|+..|++||.|.++.+..+. ++|||||.|.+.++|..|+..|||..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56677888754322 24889999999999999987652 58999999999999999999999999999
Q ss_pred eEEEEEEehhhHHHHHHH
Q 004182 124 QELMLKVDQATREYLERY 141 (770)
Q Consensus 124 r~L~V~~a~~~k~~le~~ 141 (770)
+.|.|.++.. ..|...|
T Consensus 83 R~i~v~~~~~-~~y~~~f 99 (114)
T 3s6e_A 83 KMITAAYVPL-PTYHNLF 99 (114)
T ss_dssp EECEEEEECH-HHHHHHC
T ss_pred EEEEEEEEcH-HHHHHhC
Confidence 9999999864 3454333
No 209
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=6.5e-08 Score=85.43 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCC----CCCCH----HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceec
Q 004182 51 EKPQTKVYVGKIA----PTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 51 ~~~~~tVfVgNLp----~~vte----~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
.++.-||+|...+ .+..+ ..|...|..||.|..++++.+ .+||+|.+.++|.+||. |||+.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 3556788888776 23434 589999999999999999987 38999999999999999 9999999
Q ss_pred CeEEEEEEehh
Q 004182 123 GQELMLKVDQA 133 (770)
Q Consensus 123 Gr~L~V~~a~~ 133 (770)
|+.|+|.++..
T Consensus 75 Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 NRTITIALKSP 85 (91)
T ss_dssp TEEEEEEECCC
T ss_pred CeEEEEEeCCC
Confidence 99999987653
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=4e-07 Score=80.83 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=61.3
Q ss_pred CCCCCEEEEcCCCCC-----C-CH---HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCcee
Q 004182 51 EKPQTKVYVGKIAPT-----A-DS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 121 (770)
Q Consensus 51 ~~~~~tVfVgNLp~~-----v-te---~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I 121 (770)
.++.-||+|..++.. + .+ ..|.+.|..||.|..++++.+. +||+|.+.++|++||. |||+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 455789999888743 3 32 4788999999999999999882 9999999999999999 999999
Q ss_pred cCeEEEEEE
Q 004182 122 DGQELMLKV 130 (770)
Q Consensus 122 ~Gr~L~V~~ 130 (770)
+|+.|+|.+
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999975
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.18 E-value=2.4e-06 Score=86.48 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=60.7
Q ss_pred CCHHHHHHHHhhcCCeeEEEEeccC----CCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEEEehh
Q 004182 66 ADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 133 (770)
Q Consensus 66 vte~~Lr~lFs~~G~V~s~kiv~d~----~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~~a~~ 133 (770)
-.+.+|...|+.||.|.++.++.+. .+|.++||+||+|.+.++|.+|+..|||..++|+.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3456899999999999999998553 4558999999999999999999999999999999999999764
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00033 Score=63.67 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhhc-----CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEE
Q 004182 52 KPQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 126 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~~Lr~lFs~~-----G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L 126 (770)
...++|-+-|||..+++..|+.|+..+ |.++.+.++.|. +-++|+|.+...|.+|.-.|+|..|+|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 346888899999999999999999999 999999999885 679999999999999998899999999999
Q ss_pred EEEEeh
Q 004182 127 MLKVDQ 132 (770)
Q Consensus 127 ~V~~a~ 132 (770)
++.-..
T Consensus 93 r~gTv~ 98 (117)
T 2l9w_A 93 RSGTIN 98 (117)
T ss_dssp EEECHH
T ss_pred EecCHH
Confidence 996443
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0028 Score=57.20 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCH-----HHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 53 PQTKVYVGKIAPTADS-----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte-----~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
-+++|+|.||+..+-. ..++.+|..|+.+.+|.....- .-..|.|.++++|.+|-..||+..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3678999999875532 5789999999999999877641 3568999999999999999999999999999
Q ss_pred EEEehh
Q 004182 128 LKVDQA 133 (770)
Q Consensus 128 V~~a~~ 133 (770)
|-+++.
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988874
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.89 E-value=0.085 Score=46.46 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCC--cceEEEEecCHHHHHHHHHHhCCceec
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~--kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
+.|.|.+||+++|++.+...++.++.+..+..+.+..+.+. .+-|||.|.+.+++......++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999988776666665444333 356899999999999999999998764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.01 E-value=0.21 Score=44.47 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=44.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHh
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 116 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~L 116 (770)
.+.++| +.|..+...+|..+|+.||. ..+..+-| ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 445566 99999999999999999983 34555566 58999999999999999876
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.87 E-value=0.46 Score=42.67 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=55.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhh----c-CCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKV----C-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 127 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~----~-G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~ 127 (770)
...+|.|.|||+.+.++.|.-+|.+ . |.|..|.... +-|+|+|.+...|.+.|. -..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 4688999999999999999999986 2 4777776633 578999999999998886 336677788888
Q ss_pred EEE
Q 004182 128 LKV 130 (770)
Q Consensus 128 V~~ 130 (770)
|.-
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 853
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=92.25 E-value=0.45 Score=43.84 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=56.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecC-eEEEEEEe
Q 004182 53 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKVD 131 (770)
Q Consensus 53 ~~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~G-r~L~V~~a 131 (770)
..+.|.|-+.|+.. ...|...|..||.|...... ....+-.|.|.+..+|.+||. .||..|+| -.|-|..+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 36778888888775 56777889999999988762 123689999999999999999 89999984 66666654
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.83 E-value=0.2 Score=44.80 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 004182 55 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (770)
Q Consensus 55 ~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln 117 (770)
+.++| +.|..+...+|..+|+.|| -..+..+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999998 555666677 589999999999999998764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.01 E-value=0.54 Score=44.04 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=56.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccC-------------CCC-CCcceEEEEecCHHHHHHHHHHhCCc
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------------SNG-TPKGFGFCEFESAEGVLRALRLLNKF 119 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~-------------~tG-k~kGfGFVeF~~~esA~~AL~~Lng~ 119 (770)
.+.|.|-+.|+..+ ..+...|++||.|..-.-.... ..+ ...++-.|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566666766554 5666789999998763211110 001 124577999999999999999 9999
Q ss_pred eecCeEEEEEEehhhHHHHHHH
Q 004182 120 NIDGQELMLKVDQATREYLERY 141 (770)
Q Consensus 120 ~I~Gr~L~V~~a~~~k~~le~~ 141 (770)
.|+|..|-|..+ .+..+++.
T Consensus 85 ii~G~mIGV~Py--~~~~ve~l 104 (132)
T 3p3d_A 85 VFNGVLLGVIPY--TKDAVERL 104 (132)
T ss_dssp EETTEECEEEEC--CHHHHHHH
T ss_pred EeCcEEEEEEEC--CHHHHHHH
Confidence 999986666655 34455443
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=87.50 E-value=0.38 Score=45.17 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=29.1
Q ss_pred EEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCce
Q 004182 83 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 120 (770)
Q Consensus 83 s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~ 120 (770)
+++++.+ ...++|||||+|.+..+|.+|+..+++..
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 4566666 34789999999999999999998877643
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.69 E-value=0.99 Score=40.13 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=50.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCC--cceEEEEecCHHHHHHHHHHhCCceec
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 122 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~--kGfGFVeF~~~esA~~AL~~Lng~~I~ 122 (770)
+-.|.|..||+++|++.+.+.++.+-.+.....+.+..+-+. .+-|||.|.+.+++..-...++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 457999999999999998888876644422223332222222 245899999999999999999998763
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=85.48 E-value=0.37 Score=45.03 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCCCcceEEEEecCHHHHHHHHHHh-CCceecCeEEEEEEeh
Q 004182 92 NGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQ 132 (770)
Q Consensus 92 tGk~kGfGFVeF~~~esA~~AL~~L-ng~~I~Gr~L~V~~a~ 132 (770)
..+.+|+++|+|.+.+.|.+|+..| ||..|+| .|.|.++.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 4578899999999999999999999 9999999 88887554
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=79.95 E-value=0.92 Score=51.02 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=41.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHH
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 114 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~ 114 (770)
.++|||. .|..++..+|..+|+.||.|.++.+..+ . ..|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCCHHHHHHHHh
Confidence 5889997 7899999999999999999999987654 2 2799999999999887754
No 224
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=58.80 E-value=3.5 Score=31.08 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Q 004182 727 ASQMLELLQTILDDEAEMFVLKM 749 (770)
Q Consensus 727 p~~l~~~l~~~lde~a~~fv~~l 749 (770)
-..|++++..+|+.+|+.||...
T Consensus 16 ~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 16 TDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45899999999999999999754
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.76 E-value=19 Score=40.73 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhhcCCeeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhC
Q 004182 54 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 117 (770)
Q Consensus 54 ~~tVfVgNLp~~vte~~Lr~lFs~~G~V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Ln 117 (770)
...++|+ .|..+...+|..+|+.||. ..+..+.+ ..+||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456666 8888999999999999994 46666665 589999999999999998884
No 226
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=54.56 E-value=31 Score=30.38 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=47.5
Q ss_pred HhhhhhhhHHHHHHHhhCCchh--HHHHHHHHhhhcCCChHHHHHHHHHhhhHH-HH---HHHHHHH
Q 004182 690 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE-AE---MFVLKMW 750 (770)
Q Consensus 690 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~p~~l~~~l~~~lde~-a~---~fv~~lW 750 (770)
+-.-||--|.+|...+=.+-|+ .|.+||+=.+....+|..++.+|+..+|.= .+ .||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788889998888555555 488999999999999999999999999943 33 5665544
No 227
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=36.53 E-value=17 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCchhHHHHHHHHhhh
Q 004182 698 ISKKITEFLGEEETTLVDYIVSSTQ 722 (770)
Q Consensus 698 i~kki~e~lG~ee~~lv~~i~~~l~ 722 (770)
+..||+++||+.+=.=+|+|++.|.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 228
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=35.16 E-value=51 Score=22.32 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCC
Q 004182 4 PAFPPRPPGPVGVL 17 (770)
Q Consensus 4 P~~Pp~PPgp~~v~ 17 (770)
|+-||+|-+.++++
T Consensus 2 ppgppgprgqpgvm 15 (31)
T 4gyx_A 2 PPGPPGPRGQPGVM 15 (31)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCccc
Confidence 34444455544443
No 229
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=28.49 E-value=8.2 Score=31.68 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHH
Q 004182 726 KASQMLELLQTILDDEAEMFVLKM 749 (770)
Q Consensus 726 ~p~~l~~~l~~~lde~a~~fv~~l 749 (770)
+-..||+++..||+.+|+.||...
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445789999999999999999754
No 230
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=21.01 E-value=25 Score=30.89 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=0.0
Q ss_pred CCCCEEEEcCCCCCCCHH
Q 004182 52 KPQTKVYVGKIAPTADSD 69 (770)
Q Consensus 52 ~~~~tVfVgNLp~~vte~ 69 (770)
...++|||+|||+.+|++
T Consensus 95 ~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ------------------
T ss_pred CCCCceEeCCCCCCcccc
Confidence 345789999999999875
No 231
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=20.24 E-value=1.7e+02 Score=23.55 Aligned_cols=67 Identities=9% Similarity=0.121 Sum_probs=39.3
Q ss_pred EEEEcC-CCCCCCHHHHHHHHhhcCC-----eeEEEEeccCCCCCCcceEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 004182 56 KVYVGK-IAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 129 (770)
Q Consensus 56 tVfVgN-Lp~~vte~~Lr~lFs~~G~-----V~s~kiv~d~~tGk~kGfGFVeF~~~esA~~AL~~Lng~~I~Gr~L~V~ 129 (770)
++||+. --..+...+|..++..-+. |-.+.+. + .|.||+-... .+..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-d-------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-D-------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-S-------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-C-------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 566631 2234555666666665443 3445553 3 4888887754 5778888899999999999887
Q ss_pred Ee
Q 004182 130 VD 131 (770)
Q Consensus 130 ~a 131 (770)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
Done!