BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004183
         (770 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
 pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
          Length = 492

 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 461 LEDVWSSARVLQMAVLDDSIKVSCMDDPVSRE-VVAIIQSEVFWNELEAVYSLVKLIKGM 519
           LE + S   +L    L   I+ SC    V+ E  +  I+  +  +E E    LV+ + G 
Sbjct: 63  LERINSDPTLLPNITLGCEIRDSCWHSAVALEQSIEFIRDSLISSEEEE--GLVRCVDGS 120

Query: 520 TQEIEAERPLIGQCLPLWEELRSKVKNWCAKFSIP 554
           +    +++P++G   P    +  +V+N    F+IP
Sbjct: 121 SSSFRSKKPIVGVIGPGSSSVAIQVQNLLQLFNIP 155


>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
           Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
          Length = 447

 Score = 30.4 bits (67), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 295 KIRTCCGDGDDDNLVKFTVNLPNGTSVYQKALITGGSVSSK 335
           KIR    D       +FTVN+ NGT   +KA +TGG VS K
Sbjct: 358 KIRALVKD-----FKEFTVNV-NGTQSIEKAFVTGGGVSVK 392


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,701,353
Number of Sequences: 62578
Number of extensions: 802255
Number of successful extensions: 1736
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 4
length of query: 770
length of database: 14,973,337
effective HSP length: 106
effective length of query: 664
effective length of database: 8,340,069
effective search space: 5537805816
effective search space used: 5537805816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)