Query 004183
Match_columns 770
No_of_seqs 185 out of 679
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:55:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bw3_A Transposase; DNA recomb 100.0 4E-58 1.4E-62 530.8 33.1 461 207-730 7-531 (534)
2 2djr_A Zinc finger BED domain- 60.5 4.1 0.00014 33.9 2.2 47 57-106 7-57 (76)
3 1js9_A Coat protein, capsid pr 42.9 6.6 0.00023 36.8 0.7 39 62-100 25-63 (189)
4 1za7_A Coat protein; mutant vi 38.3 7.6 0.00026 35.7 0.4 38 64-101 3-40 (165)
5 2ct5_A Zinc finger BED domain 34.2 12 0.00041 30.9 0.9 48 58-107 8-55 (73)
6 1cwp_A Coat protein, CCMV; bro 31.2 7.5 0.00026 36.5 -0.9 38 64-101 28-65 (190)
7 2kvf_A Zinc finger and BTB dom 23.1 19 0.00064 21.9 0.2 23 82-107 4-26 (28)
8 1ard_A Yeast transcription fac 21.8 23 0.00078 21.5 0.4 23 82-107 3-25 (29)
9 1znf_A 31ST zinc finger from X 21.8 23 0.00078 21.2 0.4 23 82-107 2-24 (27)
10 2kvg_A Zinc finger and BTB dom 21.7 20 0.00069 21.8 0.1 23 82-107 4-26 (27)
11 2lvu_A Zinc finger and BTB dom 26.9 20 0.00068 21.5 0.0 13 82-94 3-15 (26)
12 2kvh_A Zinc finger and BTB dom 21.1 22 0.00074 21.5 0.2 23 82-107 4-26 (27)
No 1
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=100.00 E-value=4e-58 Score=530.77 Aligned_cols=461 Identities=13% Similarity=0.126 Sum_probs=340.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHcC-------------CCCCChhhHHHHHHHHHHHHH
Q 004183 207 PGPVLSKDQIDSAVELLTDWFYDSCGSVSFSSFDHPKFRAFLSQVG-------------LPVVSRKEVLDARLDRKFVEA 273 (770)
Q Consensus 207 ~~~~~~k~q~~~a~~~ia~~i~~~~~~iPfs~VE~p~Fr~~l~~l~-------------~~~PSr~~l~~~~L~~~y~ev 273 (770)
....+++++.+.+.++|++||+++ ++||++||+|+|++|++.++ +.+||++++++.+++ .|.++
T Consensus 7 ~~~~~~~~~~~~~~~~l~~~i~~~--~~Pf~~ve~~~F~~~l~~l~~~~p~~~~~~~~~~~~ps~~~~~~~i~~-~~~~~ 83 (534)
T 2bw3_A 7 ELKTVSADCKKEAIEKCAQWVVRD--CRPFSAVSGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPITLSRKVTS-DAKEK 83 (534)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHT--TCCGGGGGCHHHHHHHHHHHHHHHHHCSCBCHHHHSCCHHHHHHHHHH-HHHHH
T ss_pred cceecChhhHHHHHHHHHHHHHhc--CCcchhhCCHHHHHHHHHHHhhhhhhccccchhhcCCCcccHHHHHHH-HHHHH
Confidence 355778999999999999999999 99999999999999999883 249999999887555 69999
Q ss_pred HHHHHHHHhhc---cceEEEecccccCCCCCCCCCCceeEEEeecCCCceeeeeeE---ecCC-CCCHHHHHHHHHHHHH
Q 004183 274 KTESEIRIREA---MFFQVASDGWKIRTCCGDGDDDNLVKFTVNLPNGTSVYQKAL---ITGG-SVSSKLAEDVFWETVM 346 (770)
Q Consensus 274 k~~v~~~lk~a---~~~sIttDgWTs~~~~~g~~~~s~i~~tvh~~~g~~~f~ksv---~~s~-~~ta~~i~e~L~~vIe 346 (770)
++++.+.++++ .+|+|++|+||+.. ++++||+|+|||+++..+..+.+ .+.+ .|||++|++.|.++|+
T Consensus 84 ~~~l~~~l~~~~~~~~~sl~~D~wt~~~-----~~~~~l~i~v~~i~~~~~~~~~L~~~~~~~~~~t~~~i~~~i~~~l~ 158 (534)
T 2bw3_A 84 KALIGREIKSAVEKDGASATIDLWTDNY-----IKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKAIFS 158 (534)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEETT-----TTEEEEEEEEEEEETTEEEEEEEEEEEECGGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCceEEEEecccCCC-----CCcceeEEEEEEeeCCceEEEEEeEeecCCCCCCHHHHHHHHHHHHH
Confidence 99999999986 79999999999973 24599999999996553322222 3455 6999999999999999
Q ss_pred hhhcCCcce--EEEEEech--hhHHHHHHHHhhcCcceecchhHHHHHHHHhHhhccCchhhhHHHHHHHHHHHHcCchH
Q 004183 347 GICGNGVQR--CVGIVADK--YKAKALRNLETQNQWMVNVSCQLQGFLSLLKDFGKELPVFTSVRETCLKIGNFVNNKPQ 422 (770)
Q Consensus 347 e~~~~g~~k--Vv~IVTDN--~~~kA~~~L~~k~~~i~~l~C~aH~LnLivkD~~k~l~~v~~vi~karkIv~ff~~s~~ 422 (770)
+| |.++ ++++|||| ++.++++ ..++++|++|+|||+++|++++++.+..++.++++|+.||++|+.
T Consensus 159 ~~---~l~~~~~v~~vtDnasn~~~~~~-------~~~~i~C~~H~lnLi~~~~l~~~~~~~~~l~~~~~iv~~i~~s~~ 228 (534)
T 2bw3_A 159 QF---NVEDLSSIKFVTDRGANVVKSLA-------NNIRINCSSHLLSNVLENSFEETPELNMPILACKNIVKYFKKANL 228 (534)
T ss_dssp TT---TCCCCTTCEEEECCCHHHHHHTT-------TSEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hc---CCCcccceeEECCCHHHHHHHHh-------cCcccccHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccHh
Confidence 99 6654 89999999 5444433 136899999999999999887788999999999999999999875
Q ss_pred HHHHHHHHhhhccccccccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccchheeecChhH
Q 004183 423 IRSSLRKHKMVGLEYVELIRVPSNKCDCRNNFVHLFGMLEDVWSSARVLQMAVLDDSIKVSCMDDPVSREVVAIIQSEVF 502 (770)
Q Consensus 423 ~~~~Lrk~q~q~~g~~~Llr~~~t~~~~~tRW~S~y~mLerlle~k~aL~~l~~~e~~~~~~~~~~~a~ev~~ivld~~F 502 (770)
.. + ++ ..|+++.. |||+|+|.||+++++++++|..++.++++. ......+
T Consensus 229 ~~------~---l~-~~l~~~~~------tRW~S~~~~L~~~l~~~~~i~~~~~~~~~~--------------~~~~~~d 278 (534)
T 2bw3_A 229 QH------R---LR-SSLKSECP------TRWNSTYTMLRSILDNWESVIQILSEAGET--------------QRIVHIN 278 (534)
T ss_dssp GG------G---GC-CCCCCSSC------GGGCHHHHHHHHHHHTHHHHHHHHHHTTCG--------------GGTTTCC
T ss_pred hH------h---cc-cccCCCCC------CCcHhHHHHHHHHHHHHHHHHHHHHhcccc--------------cCCchhh
Confidence 32 1 11 23444433 599999999999999999999988754321 0124456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CcccchHHHHHHHHHHHHHHhhhcCCC-------hhhHHHHHHHHHhccCChHH
Q 004183 503 WNELEAVYSLVKLIKGMTQEIEAER-PLIGQCLPLWEELRSKVKNWCAKFSIP-------GENVEKIVEKRFRKNYHPAW 574 (770)
Q Consensus 503 W~~Le~vv~lLkP~~~at~~le~d~-ptls~V~Pl~~~L~~k~k~~~~~~~~~-------~~~i~~~Id~Rw~~~~~pl~ 574 (770)
|..++.++.+|+||+.+++.++++. |++++|||.+..|+..+ .....+ ...+++.+++||++..+++|
T Consensus 279 w~~~~~l~~iL~pf~~~t~~l~~~~~pt~~~v~~~~~~l~~~l----~~~~~~~~~~~~l~~~m~~~l~ky~~~~~~~~~ 354 (534)
T 2bw3_A 279 KSIIQTMVNILDGFERIFKELQTCSSPSLCFVVPSILKVKEIC----SPDVGDVADIAKLKVNIIKNVRIIWEENLSIWH 354 (534)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHTCSSSCCGGGHHHHHHHHHHHT----CCCTTSCHHHHHHHHHHHHHHHHTTGGGCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHh----cccccchHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 9999999999999999999999875 99999999998876543 222111 12578889999998778999
Q ss_pred HHHHHhCcccccccCCCCCCCCCCc------chHHHHHHHHHHHHHhcC-------cHHHH--HHH--------------
Q 004183 575 SAAFILDPLYLIKDNSGKYLPPFKC------LTEEQEKDVDKLITRLVS-------REEAH--FAL-------------- 625 (770)
Q Consensus 575 ~aA~~LDPry~~kd~~~~ylp~~~~------lt~e~~~~v~~~i~rl~~-------~~e~~--~~l-------------- 625 (770)
++|++|||||++-+. .++. +......++.+.+..+.. ..... ..+
T Consensus 355 ~~A~~LdPr~~~l~p------~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
T 2bw3_A 355 YTAFFFYPPALHMQQ------EKVAQIKEFCLSKMEDLELINRMSSFNELSATQLNQSDSNSHNSIDLTSHSKDISTTSF 428 (534)
T ss_dssp HHHHHTSGGGTTSCC------SCHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSCCC----------------CCCHHHH
T ss_pred heeeEecccccccCH------HHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhccCCCCcccccccccccccCccchHH
Confidence 999999999954332 2210 000001111112111100 00000 000
Q ss_pred --HHHhhhh-hcCCChHHHHHHHhhccCcccccccccCCCchhhHhhhhccccchHHHHHHHHhcccccCcccccccccc
Q 004183 626 --MELMKWR-SEGLDPLYAQAVQVKQRDPITGKMRIANPQSSRLVWETCLSEYKSLGKVAVRLIFLHATSFGFKCNWSFM 702 (770)
Q Consensus 626 --~El~~~r-~e~~d~~~~~~~~~~~~~~~~~~~~~~~p~sp~~WW~~~~~~fP~L~kLA~riLsipaSS~~sER~FS~~ 702 (770)
..+.... .+.... ...+...|..++. ......+|+.||+.++..||.|++||++||++||||++|||+||.+
T Consensus 429 ~~~~~~~~~~~~~~~~-~~~el~~yl~~~~----~~~~~~~~l~wW~~~~~~~p~L~~~a~~~l~~p~ss~~~er~fs~~ 503 (534)
T 2bw3_A 429 FFPQLTQNNSREPPVC-PSDEFEFYRKEIV----ILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLA 503 (534)
T ss_dssp HCHHHHHHHHHSCCCC-HHHHHHHHHTCCC----CCCTTCCHHHHHHHTTTTSHHHHHHHHHHHTSCSCTTTTHHHHHHT
T ss_pred HHHHHhhcCCCCCCCC-hHHHHHHHHcCCC----CcCCCCChHHHHHhCCccCChHHHHHHHHhcCCccccccccccccc
Confidence 0000000 000000 0111111111111 0112347889999999999999999999999999999999999999
Q ss_pred hhhhccccCCCCHHHHhhhhhhhhcccc
Q 004183 703 KWYCVQRHSRASLERAQKMIFVAAHAKL 730 (770)
Q Consensus 703 g~I~t~kRnRL~~e~vekLvFl~~N~kL 730 (770)
|.|++++||||+++++++|+|++.|.++
T Consensus 504 ~~~~~~~r~~l~~~~~~~l~~~~~~~~~ 531 (534)
T 2bw3_A 504 GNIITEKRNRIGQQTVDSLLFLNSFYKN 531 (534)
T ss_dssp HHHHHCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885
No 2
>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.51 E-value=4.1 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=29.4
Q ss_pred cceecccccceeecCCCCCcccchhhhcccccccccc----CCCCcchhHhhhc
Q 004183 57 GAWYWVHLEPILVRHPETNLPKAVKLKCSLCDAVFSA----SNPSRTASEHLKR 106 (770)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 106 (770)
-.--|-||.-. ..+-|.+...+-.|-+|+..|+. .+-...--.||++
T Consensus 7 ~S~VW~~F~k~---~~~~~~~~~~~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~ 57 (76)
T 2djr_A 7 GSEAWEYFHLA---PARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKS 57 (76)
T ss_dssp CGGGGGGEEEC---CCCSSSCSCSCEEESSSCCBCCCCSSCCSSSCHHHHHHHH
T ss_pred cChHHhccccc---cccCCCCCCCEEECCCCCCccCCCCCCCCchHHHHHHHHH
Confidence 45579999832 33333333558899999999992 3333444556655
No 3
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=42.86 E-value=6.6 Score=36.83 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=21.7
Q ss_pred ccccceeecCCCCCcccchhhhccccccccccCCCCcch
Q 004183 62 VHLEPILVRHPETNLPKAVKLKCSLCDAVFSASNPSRTA 100 (770)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (770)
..+.|++|.++.+|+-++.|-+-..|=.-|++|||--+|
T Consensus 25 ~~~qPVIvEp~asG~g~~~ka~~Gy~itkw~~s~~a~~A 63 (189)
T 1js9_A 25 ARVQPVIVEPLAAGQGKAIKAIAGYSISKWEASSDAITA 63 (189)
T ss_dssp ----------------CCCCCCTTEEEECCBCCCCCBCS
T ss_pred cccCceEeccCccCCceeeehhcceEEEEeecCChhhcc
Confidence 347999999999999999999999999999999998776
No 4
>1za7_A Coat protein; mutant virus capsid structure, icosahedral particle, stablizing mutation, stable mutant, beta hexamer, beta barrel; 2.70A {Cowpea chlorotic mottle virus}
Probab=38.34 E-value=7.6 Score=35.73 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=24.2
Q ss_pred ccceeecCCCCCcccchhhhccccccccccCCCCcchh
Q 004183 64 LEPILVRHPETNLPKAVKLKCSLCDAVFSASNPSRTAS 101 (770)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (770)
+.|++|.++.+|+-++.|-|-..|=.-|++|||--+|-
T Consensus 3 ~qPVIvEp~asG~gr~~ka~~Gy~itkw~~s~~a~~AK 40 (165)
T 1za7_A 3 VQPVIVEPIASGQGRAIKAWTGYSVSKWTASCAAAEAK 40 (165)
T ss_dssp ------------CCCCCCCCTTEEEEEEEEECCCBCTT
T ss_pred ccceEeccCcCCCceeeehhcceEEEEeecCChhhccc
Confidence 57999999999999999999999999999999988763
No 5
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Probab=34.23 E-value=12 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=30.3
Q ss_pred ceecccccceeecCCCCCcccchhhhccccccccccCCCCcchhHhhhcC
Q 004183 58 AWYWVHLEPILVRHPETNLPKAVKLKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
--+|-||.-+...+ ++.++ .-+..|-+|.++++.++-.-.--.||++.
T Consensus 8 S~VW~~F~k~~~~~-g~il~-~~~a~Ck~C~~~l~~~g~TSnL~rHL~~~ 55 (73)
T 2ct5_A 8 SKVWKYFGFDTNAE-GCILQ-WKKIYCRICMAQIAYSGNTSNLSYHLEKN 55 (73)
T ss_dssp CCTTSSSCCCCCSS-SCGGG-SSCCEETTTTEECCCCSSTHHHHHHHHHS
T ss_pred ChHHHhCCccccCC-Ccccc-CCEEECCCCCccccCCCChHhHHHHHHHH
Confidence 45799998764211 12222 13668999999998654444556777664
No 6
>1cwp_A Coat protein, CCMV; bromovirus, icosahedral virus, virus/RNA complex; 3.20A {Cowpea chlorotic mottle virus} SCOP: b.121.4.5
Probab=31.23 E-value=7.5 Score=36.49 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=22.1
Q ss_pred ccceeecCCCCCcccchhhhccccccccccCCCCcchh
Q 004183 64 LEPILVRHPETNLPKAVKLKCSLCDAVFSASNPSRTAS 101 (770)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (770)
+.|++|.++.+|+-++.|-+-..|=.-|++|||--+|-
T Consensus 28 ~qPVIvEp~asG~g~~~ka~~Gy~vtkw~~s~~a~~AK 65 (190)
T 1cwp_A 28 VQPVIVEPIASGQGKAIKAWTGYSVSKWTASCAAAEAK 65 (190)
T ss_dssp --------------CCCCCCSSEEEEEEEEEEECCCTT
T ss_pred cCceEeccCccCCceeehhhcceEEEEeecCChhhccc
Confidence 58999999999999999999999999999999987763
No 7
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.09 E-value=19 Score=21.92 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=15.4
Q ss_pred hhccccccccccCCCCcchhHhhhcC
Q 004183 82 LKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
.+|..|++.|+-. ..-..|.+.+
T Consensus 4 ~~C~~C~k~f~~~---~~l~~H~~~h 26 (28)
T 2kvf_A 4 YSCSVCGKRFSLK---HQMETHYRVH 26 (28)
T ss_dssp EECSSSCCEESCH---HHHHHHHTTS
T ss_pred ccCCCCCcccCCH---HHHHHHHHhc
Confidence 4799999999753 2344565544
No 8
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.77 E-value=23 Score=21.52 Aligned_cols=23 Identities=17% Similarity=0.566 Sum_probs=14.9
Q ss_pred hhccccccccccCCCCcchhHhhhcC
Q 004183 82 LKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
.+|..|+..|+-. ..-..|++.+
T Consensus 3 ~~C~~C~~~f~~~---~~l~~H~~~h 25 (29)
T 1ard_A 3 FVCEVCTRAFARQ---EHLKRHYRSH 25 (29)
T ss_dssp CBCTTTCCBCSSH---HHHHHHHHHH
T ss_pred eECCCCCcccCCH---HHHHHHHHHh
Confidence 4799999999742 2344555544
No 9
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.75 E-value=23 Score=21.19 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=15.3
Q ss_pred hhccccccccccCCCCcchhHhhhcC
Q 004183 82 LKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
.+|..|+..|+-+ ..-..|.+.+
T Consensus 2 ~~C~~C~k~f~~~---~~l~~H~~~h 24 (27)
T 1znf_A 2 YKCGLCERSFVEK---SALSRHQRVH 24 (27)
T ss_dssp CBCSSSCCBCSSH---HHHHHHGGGT
T ss_pred ccCCCCCCcCCCH---HHHHHHHHHc
Confidence 3699999999753 2345566554
No 10
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.71 E-value=20 Score=21.84 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=14.9
Q ss_pred hhccccccccccCCCCcchhHhhhcC
Q 004183 82 LKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
.+|..|+..|+-+ ..-..|.+.+
T Consensus 4 ~~C~~C~k~f~~~---~~l~~H~~~H 26 (27)
T 2kvg_A 4 YRCPLCRAGCPSL---ASMQAHMRGH 26 (27)
T ss_dssp EEETTTTEEESCH---HHHHHHHTTC
T ss_pred cCCCCCCcccCCH---HHHHHHHHhc
Confidence 4799999999742 2344555443
No 11
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.93 E-value=20 Score=21.47 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.6
Q ss_pred hhccccccccccC
Q 004183 82 LKCSLCDAVFSAS 94 (770)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (770)
.+|..|+..|+-+
T Consensus 3 ~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 3 YVCERCGKRFVQS 15 (26)
Confidence 4799999999754
No 12
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.13 E-value=22 Score=21.51 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=14.9
Q ss_pred hhccccccccccCCCCcchhHhhhcC
Q 004183 82 LKCSLCDAVFSASNPSRTASEHLKRG 107 (770)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (770)
.+|..|+..|+-+ ..-..|++.+
T Consensus 4 ~~C~~C~k~f~~~---~~l~~H~~~H 26 (27)
T 2kvh_A 4 FSCSLCPQRSRDF---SAMTKHLRTH 26 (27)
T ss_dssp EECSSSSCEESSH---HHHHHHHHHC
T ss_pred ccCCCcChhhCCH---HHHHHHHHHc
Confidence 4799999999753 2334555443
Done!