Your job contains 1 sequence.
>004184
MNVDGKADKRLQELNHCLQAGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVT
ASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNG
LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLV
KPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENSGNNTGSNDEDNNGSI
GVNGGDGSDDGSGTQSSWTKKAVEVDSPRHMSPSDQLAECPDSTCAQVIHSNAEITGSRR
VPVTAAKECQDHEERCENFAKRSRDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLG
SSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDTEYEASNKPSKILDI
NSKSIKDSKELPSLELSLKRLRGVKDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPG
GNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGL
KNKSEVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPRSTQEQLTQHY
DNCHHLVHNMQQQHLPHDHDQLSLKKMAEAVPQCGSSNMLGGFVEGNAGNYSINGSASGS
NHGSNGQNGSSTAVNAGGMNVESDNGIAGKSGSGGASGSGSGSGNRIDKNKFADREAAVT
KYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSREPECS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004184
(770 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 1151 7.9e-117 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 358 1.1e-52 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 208 2.0e-26 3
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 176 5.0e-14 2
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 184 6.0e-11 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 178 4.1e-10 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 178 5.9e-10 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 149 1.7e-09 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 170 2.8e-09 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 147 2.8e-09 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 164 5.0e-09 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 164 5.0e-09 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 169 8.1e-09 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 171 1.5e-08 2
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 134 6.9e-08 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 133 8.8e-08 1
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 133 8.8e-08 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 152 3.0e-07 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 152 3.0e-07 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 128 3.0e-07 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 128 3.0e-07 1
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 125 6.4e-07 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 125 6.4e-07 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 145 7.2e-07 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 160 7.5e-07 2
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 145 7.8e-07 1
UNIPROTKB|Q48P87 - symbol:pilG "Type IV pilus response re... 124 8.1e-07 1
DICTYBASE|DDB_G0268012 - symbol:DDB_G0268012 "response re... 118 1.3e-06 2
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 122 1.3e-06 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 122 1.3e-06 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 122 1.3e-06 1
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 138 2.1e-06 3
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 135 2.2e-06 1
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 138 2.7e-06 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 119 2.8e-06 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 119 2.8e-06 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 118 3.6e-06 1
TAIR|locus:2175564 - symbol:CIA2 "chloroplast import appa... 139 5.0e-06 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 129 5.6e-06 3
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 128 6.4e-06 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 115 7.5e-06 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 114 9.6e-06 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 114 9.6e-06 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 113 1.2e-05 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 127 1.3e-05 1
TIGR_CMR|GSU_0879 - symbol:GSU_0879 "chemotaxis protein C... 132 1.5e-05 1
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 132 1.9e-05 2
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 123 2.0e-05 1
TIGR_CMR|GSU_3198 - symbol:GSU_3198 "chemotaxis protein C... 111 2.0e-05 1
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 132 2.1e-05 2
UNIPROTKB|Q1DF43 - symbol:MXAN_0460 "Response regulator" ... 128 2.5e-05 1
TAIR|locus:2028421 - symbol:BBX17 "B-box domain protein 1... 130 2.8e-05 1
TIGR_CMR|GSU_2313 - symbol:GSU_2313 "response regulator" ... 129 3.0e-05 1
TAIR|locus:2018344 - symbol:AT1G04500 "AT1G04500" species... 124 3.1e-05 2
TAIR|locus:2195518 - symbol:AT1G63820 species:3702 "Arabi... 128 3.6e-05 1
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 108 4.2e-05 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 108 4.2e-05 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 108 4.2e-05 1
TIGR_CMR|DET_0130 - symbol:DET_0130 "response regulator" ... 108 4.2e-05 1
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 108 4.2e-05 1
TAIR|locus:2201277 - symbol:BBX14 "B-box domain protein 1... 130 4.2e-05 1
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 130 4.4e-05 1
TIGR_CMR|CPS_0081 - symbol:CPS_0081 "response regulator/G... 128 7.4e-05 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 108 8.2e-05 2
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 132 8.2e-05 2
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 105 8.8e-05 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 105 8.8e-05 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 105 8.8e-05 1
UNIPROTKB|Q9KRC3 - symbol:VC_1719 "DNA-binding response r... 122 9.1e-05 1
TIGR_CMR|VC_1719 - symbol:VC_1719 "DNA-binding response r... 122 9.1e-05 1
TAIR|locus:2168083 - symbol:AT5G59990 "AT5G59990" species... 119 9.7e-05 2
UNIPROTKB|Q06065 - symbol:atoC "AtoC transcriptional acti... 127 0.00011 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 103 0.00014 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 103 0.00014 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 118 0.00015 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 102 0.00018 2
TIGR_CMR|GSU_1658 - symbol:GSU_1658 "response regulator/G... 125 0.00018 1
TIGR_CMR|BA_0271 - symbol:BA_0271 "DNA-binding response r... 119 0.00020 1
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 126 0.00030 1
TAIR|locus:2177911 - symbol:AT5G41380 "AT5G41380" species... 120 0.00031 1
UNIPROTKB|Q9KM66 - symbol:cqsS "CAI-1 autoinducer sensor ... 125 0.00033 1
TIGR_CMR|VC_A0522 - symbol:VC_A0522 "sensor histidine kin... 125 0.00033 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 99 0.00039 1
TAIR|locus:2145698 - symbol:AT5G14370 species:3702 "Arabi... 125 0.00041 2
TIGR_CMR|SPO_1953 - symbol:SPO_1953 "phosphate regulon tr... 116 0.00042 1
UNIPROTKB|Q9KT55 - symbol:VC_1050 "Response regulator" sp... 120 0.00045 1
TIGR_CMR|VC_1050 - symbol:VC_1050 "response regulator" sp... 120 0.00045 1
TIGR_CMR|CPS_2524 - symbol:CPS_2524 "DNA-binding response... 116 0.00048 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 114 0.00049 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 98 0.00050 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 98 0.00050 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 98 0.00050 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 98 0.00050 1
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 123 0.00060 2
TAIR|locus:2132902 - symbol:AT4G27900 "AT4G27900" species... 116 0.00060 1
UNIPROTKB|Q52879 - symbol:cheY1 "CheY1" species:382 "Sino... 97 0.00063 1
UNIPROTKB|Q7D1A5 - symbol:cheY "Chemotaxis receiver prote... 97 0.00063 1
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 97 0.00063 1
NCBI_NP|NP_353549.1 - symbol:cheY "chemotaxisreceiverprot... 97 0.00063 1
TIGR_CMR|CPS_0681 - symbol:CPS_0681 "DNA-binding response... 115 0.00068 1
WARNING: Descriptions of 3 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 267/540 (49%), Positives = 335/540 (62%)
Query: 45 SSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVA 104
+ I DV++G G LQ+P Q A VCWERFLH+R+++VLLVENDD TR++V
Sbjct: 41 NGITMDVRNGSSGG------LQIPLSQQTAATVCWERFLHVRTIRVLLVENDDCTRYIVT 94
Query: 105 ALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163
ALLRNC YEV EA+NG+QAWK+LEDL NHID+VLTEV MP LSG+ LL KI++HK+R+N+
Sbjct: 95 ALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLSGIGLLCKILNHKSRRNI 154
Query: 164 PVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHXXXXXXXXXCT-Q 212
PVI +FKCLSKGAVDFLVKPIRKNELK LWQHVWRRC T Q
Sbjct: 155 PVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHVWRRCQSSSGSGSESGTHQ 214
Query: 213 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAVEVD-SPRHM 271
TQKS+KSK+++ S ++GS+DE QSSWTKKAV+VD SPR +
Sbjct: 215 TQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDSPRAV 274
Query: 272 SPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDVGGQ 331
S D++ DSTCAQV+HSN E ++ V A KE Q+H+++ E+ RDL++ +
Sbjct: 275 SLWDRV----DSTCAQVVHSNPEFPSNQLVAPPAEKETQEHDDKFEDVTM-GRDLEISIR 329
Query: 332 RSLDLQLEYQTESPIKLVGT-KKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAK 390
R+ DL LE + E K G ++ N + SSK ++ +G LDL+SESPSSK +E
Sbjct: 330 RNCDLALEPKDEPLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDG- 388
Query: 391 LAGAITKIIDSDKEDT-EYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDIGT 449
G+ K + S +D E EA N K LD N S+K S G KD GT
Sbjct: 389 --GSSFKAMSSHLQDNREPEAPNTHLKTLDTNEASVKISEELMHVEHSSKRHRGTKDDGT 446
Query: 450 TIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESAS-QVVNSLEIIKKGSDCGIQSHS 508
++DDRNVLRRS+ SAFSRYN ASN NK GGN+ S S Q NS ++IKK ++ HS
Sbjct: 447 LVRDDRNVLRRSEGSAFSRYNPASNANKISGGNLGSTSLQDNNSQDLIKK-TEAAYDCHS 505
Query: 509 NGD---PLNQSSNGGSNNMDMGSTT-NNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKND 564
N + P N S+ GSNN DM STT NNAF KP K S SS+V HSS FQP D
Sbjct: 506 NMNESLPHNHRSHVGSNNFDMSSTTENNAFTKPGAPKVSSAGSSSVK--HSS-FQPLPCD 562
Score = 297 (109.6 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 88/257 (34%), Positives = 123/257 (47%)
Query: 509 NGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQ---PTKNDL 565
+G L +S +N+ D+ T A+ + + N+S + + + S++F T+N+
Sbjct: 476 SGGNLGSTSLQDNNSQDLIKKTEAAYDCHSNM-NESLPHNHRSHVGSNNFDMSSTTENNA 534
Query: 566 LCSPRQVLLDKRDDLVASSVLVHPRSTQEQLTQHYDNCHHLVHNMXXXXXXXXXXXXSLK 625
P + SS + H S Q H++N H +N+ K
Sbjct: 535 FTKPGAPKVSS----AGSSSVKHS-SFQPLPCDHHNN--HASYNLVHVAER--------K 579
Query: 626 KMAEAVPQCGSSNMLGGFVEGNAG--NYXXXXXXXXXXXXXXXXXXXXTAVNAGGMNVES 683
K+ PQCGSSN+ +EGN NY +NAGGMN+ S
Sbjct: 580 KLP---PQCGSSNVYNETIEGNNNTVNYSVNGSVSGSGHGSNGPYGSSNGMNAGGMNMGS 636
Query: 684 DNXXXXXXXXXXXXXXXXXXX-NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKR 742
DN N D+NK + REAA+TK+RQK+ ERCFRKKVRYQSRK+
Sbjct: 637 DNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKK 696
Query: 743 LAEQRPRIRGQFVRQTA 759
LAEQRPR+RGQFVR+TA
Sbjct: 697 LAEQRPRVRGQFVRKTA 713
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 358 (131.1 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 68/134 (50%), Positives = 99/134 (73%)
Query: 76 MVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHID 135
+V WE++L L+VLLVE+D STR ++ ALLR C Y+V ++GL AW++L++ +++ID
Sbjct: 25 VVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNID 84
Query: 136 LVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIR 184
L+LTE+ +P +SG ALL+ +M H+ KN+PVI + KC+ +GA D+L+KP+R
Sbjct: 85 LILTELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMR 144
Query: 185 KNELKNLWQHVWRR 198
KNELKNLWQHVWRR
Sbjct: 145 KNELKNLWQHVWRR 158
Score = 176 (67.0 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 713 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 764
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 465
Score = 62 (26.9 bits), Expect = 1.1e-52, Sum P(3) = 1.1e-52
Identities = 27/98 (27%), Positives = 44/98 (44%)
Query: 458 LRRSDSSAFSRYNTASNVNKGPGGNIESAS----QVVNSLEIIKK-GSDCG-IQSHSNGD 511
L SD+SAFSR+ + + K ES S S E ++K SD G + SN +
Sbjct: 281 LSLSDASAFSRFEESKSAEKAVVALEESTSGEPKTPTESHEKLRKVTSDQGSATTSSNQE 340
Query: 512 PLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSST 549
+ SS N + + TN P +++ E +++
Sbjct: 341 NIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAAS 378
Score = 39 (18.8 bits), Expect = 2.7e-50, Sum P(3) = 2.7e-50
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 351 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 406
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 334 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 388
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 208 (78.3 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 47/128 (36%), Positives = 68/128 (53%)
Query: 82 FLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141
F+ +++LL +ND ++ V LL C Y+VT + Q L ID++L E+
Sbjct: 13 FIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEI 72
Query: 142 -MPCLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKN 190
+P G+ +L I K + +PVI + KCL GA D+LVKP+R NEL N
Sbjct: 73 DLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLN 132
Query: 191 LWQHVWRR 198
LW H+WRR
Sbjct: 133 LWTHMWRR 140
Score = 170 (64.9 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 32/66 (48%), Positives = 48/66 (72%)
Query: 705 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT--ANEN 762
N + NK RE A+ K+R+K+ +RCF KK+RY +RKRLAE+RPR++GQFVR+ N +
Sbjct: 523 NEVRVNKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVD 582
Query: 763 TSREPE 768
+ +P+
Sbjct: 583 LNGQPD 588
Score = 46 (21.3 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 22/110 (20%), Positives = 46/110 (41%)
Query: 486 ASQVVNSLEIIKKGSDCGIQSHSNG-DPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKS 544
AS+ +N+ + ++ + +NG DP + NG S+++ G+ + G+ N
Sbjct: 309 ASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNG-SHHLHRGAAEKFQVVASEGINNTK 367
Query: 545 EVSSTVNCLHSSSFQPTKNDLLCSPRQVLLDKRDDLVASSVLVHPRSTQE 594
+ + S T + P + +R + +S+ H R+ QE
Sbjct: 368 QAHRSRGTEQYHSQGETLQNGASYPHSL---ERSRTLPTSMESHGRNYQE 414
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 176 (67.0 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 713 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 764
+ REAA+ K+R K+ +RCF KKVRYQSRK+LAEQRPR++GQFVR T N + S
Sbjct: 130 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVR-TVNSDAS 180
Score = 39 (18.8 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 351 TKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEAAKLAGAITKIIDSDKEDT 406
T +N+ ++GSS +S + Q + ++ S + E+ + A +K +++ + T
Sbjct: 49 TTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAA-SKEVEAGSQST 103
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 184 (69.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 44/121 (36%), Positives = 70/121 (57%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++VL V++D + ++ +LLR+C Y VT +A ++L + N DLV+++V MP +
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMD 76
Query: 147 GVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G LL + +LPVI + K ++ GA D+L+KP+R ELKN+WQHV
Sbjct: 77 GFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVV 133
Query: 197 R 197
R
Sbjct: 134 R 134
Score = 49 (22.3 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 495 IIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 532
+++ D S++NGD + S N G N D + N
Sbjct: 132 VVRSRFDKNRGSNNNGDKRDGSGNEGVGNSDQNNGKGN 169
Score = 47 (21.6 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
Identities = 23/102 (22%), Positives = 38/102 (37%)
Query: 475 VNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGG-------SNNMDMG 527
+N G + S S + ++ +D G H + PLN S G D
Sbjct: 310 LNTPSGIGVRSLSSPPAGM-FLQNQTDIGKFHHVSSLPLNHSDGGNILQGLPMPLEFDQL 368
Query: 528 STTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLCSP 569
T NN K + + ++ T + SF +N L+ +P
Sbjct: 369 QTNNN---KSRNMNSNKSIAGT--SMAFPSFSTQQNSLISAP 405
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 178 (67.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 43/122 (35%), Positives = 67/122 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++VL V++D + ++ LL+ C Y VT A ++L + N DLV+++V MP +
Sbjct: 17 MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMD 76
Query: 147 GVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G LL + +LPVI + K + GA D+L+KP+R ELKN+WQHV
Sbjct: 77 GFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVV 133
Query: 197 RR 198
R+
Sbjct: 134 RK 135
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 178 (67.7 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L+VL+V++D + ++ +LR C YEVT+ A +L + D+V+++V MP +
Sbjct: 37 LRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMD 96
Query: 147 GVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G LL + +LPVI + K ++ GAVD+L+KP+R LKN+WQHV
Sbjct: 97 GFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVV 153
Query: 197 RR 198
R+
Sbjct: 154 RK 155
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 149 (57.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/117 (30%), Positives = 65/117 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
VL V++ R V++ LLR+ Y VT +G +A ++L L ++ +++T+ MP ++G
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLS-LDRNVHMIITDYCMPEMTGF 71
Query: 149 ALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHV 195
LL ++ K +PV++ +CL +GA DFL+KP+R +++ L V
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRV 128
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 170 (64.9 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 42/122 (34%), Positives = 69/122 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L+VL+V++D + ++ +L+ C YEVT +A ++L + + D+V+++V MP +
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMD 70
Query: 147 GVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G LL + +LPVI + K + GA D+L+KPIR ELK +WQHV
Sbjct: 71 GFKLLEHV---GLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 197 RR 198
R+
Sbjct: 128 RK 129
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 147 (56.8 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 35/120 (29%), Positives = 66/120 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEV-MPCL 145
+ VL V++ R V+A +LR+ Y VT + +A ++L L ++++++T+ MP +
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 146 SGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHV 195
+G LL ++ K +PV+I +CL +GA DFL+KP+R +++ L +
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 164 (62.8 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 40/122 (32%), Positives = 68/122 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
L+VL++++D S V+ LL C Y+VT N +A + D +DLV+++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G+ +L ++ S + +P +I K ++ GA DFL+KP+R EL N+WQH++
Sbjct: 71 GLLILQEVTS---KFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 197 RR 198
R+
Sbjct: 128 RK 129
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 164 (62.8 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 40/122 (32%), Positives = 68/122 (55%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
L+VL++++D S V+ LL C Y+VT N +A + D +DLV+++ P
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196
G+ +L ++ S + +P +I K ++ GA DFL+KP+R EL N+WQH++
Sbjct: 71 GLLILQEVTS---KFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIF 127
Query: 197 RR 198
R+
Sbjct: 128 RK 129
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 169 (64.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 44/122 (36%), Positives = 69/122 (56%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
L++L+V++D S ++ +L Y+VT + A IL + + DLVL++V MP ++
Sbjct: 11 LRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMN 70
Query: 147 GVALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVW 196
G LL ++ +LPVI+ ++ GA D+L+KPIR ELKN+WQHV
Sbjct: 71 GYNLLQQV--GLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVV 128
Query: 197 RR 198
RR
Sbjct: 129 RR 130
Score = 37 (18.1 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 580 LVASSVLVHPRSTQEQLTQHYDNCHH 605
LV+S L HP++ Q DN HH
Sbjct: 280 LVSSGQL-HPQTLAALFGQPIDN-HH 303
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 171 (65.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 42/123 (34%), Positives = 68/123 (55%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+L+VL+V++D + ++ +L C Y VT+ A +L N D+V+++V MP +
Sbjct: 27 NLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDM 86
Query: 146 SGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
G LL + +LPVI + K ++ GAVD+L+KP+R LKN+WQHV
Sbjct: 87 DGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHV 143
Query: 196 WRR 198
R+
Sbjct: 144 VRK 146
Score = 41 (19.5 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 471 TASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSS 517
T S++ PG N++S+ ++ + + +G + S P+ SS
Sbjct: 379 TGSHMRLRPGQNVQSSGMMLPVADQLPRGGPSMLPSLGQ-QPILSSS 424
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 134 (52.2 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 30/122 (24%), Positives = 70/122 (57%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V+++++ R + LL G+EV +NG +A L+ +++++T++ MP ++G
Sbjct: 8 KILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQ--REVNVIVTDINMPEMNG 65
Query: 148 VALLSKIMSHKTRKNLPVII--------FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR- 198
+ L ++ R N+ +I + ++ GA +++ KP++ +ELK++ +++
Sbjct: 66 ITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIFKES 125
Query: 199 CH 200
CH
Sbjct: 126 CH 127
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 133 (51.9 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ S RHVV+ LR GYEV +A +G A L + I+L++++V MP + G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 148 VALLSKIMSHKTRKNLPVII 167
++ L ++ H K PVI+
Sbjct: 61 ISFLKEVKKHPRYKFTPVIM 80
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 133 (51.9 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ S RHVV+ LR GYEV +A +G A L + I+L++++V MP + G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNG--DKINLIISDVNMPNMDG 60
Query: 148 VALLSKIMSHKTRKNLPVII 167
++ L ++ H K PVI+
Sbjct: 61 ISFLKEVKKHPRYKFTPVIM 80
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 152 (58.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 40/121 (33%), Positives = 70/121 (57%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVL 138
++ +++++ +L+VE+ + + V+ LL GY+VT A NGLQA ++LE NH+ DLVL
Sbjct: 446 QQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEK--NHVFDLVL 503
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNE 187
++ MP + G+A +KI+ K +P+I C+ G D ++KPIR +
Sbjct: 504 MDISMPIMDGIAA-TKILRDK-HIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKD 561
Query: 188 L 188
+
Sbjct: 562 I 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 152 (58.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 40/121 (33%), Positives = 70/121 (57%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVL 138
++ +++++ +L+VE+ + + V+ LL GY+VT A NGLQA ++LE NH+ DLVL
Sbjct: 446 QQIVNVKNHHILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEK--NHVFDLVL 503
Query: 139 TEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNE 187
++ MP + G+A +KI+ K +P+I C+ G D ++KPIR +
Sbjct: 504 MDISMPIMDGIAA-TKILRDK-HIEIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKD 561
Query: 188 L 188
+
Sbjct: 562 I 562
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 33/115 (28%), Positives = 68/115 (59%)
Query: 89 KVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++L+ E+ + R ++ A +++ G+EV EA++G +A ++L +DL++T++ MP ++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNL 191
G+ L+S + + +++P+ I K LS GA ++LVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 33/115 (28%), Positives = 68/115 (59%)
Query: 89 KVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
++L+ E+ + R ++ A +++ G+EV EA++G +A ++L +DL++T++ MP ++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP--RERLDLIITDINMPDIN 60
Query: 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNL 191
G+ L+S + + +++P+ I K LS GA ++LVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 125 (49.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLDIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVII 167
G +L K+ + K +PVI+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIV 81
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 125 (49.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 90 VLLVENDDSTRHVVA-ALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLS 146
VL+VE+ + R ++A AL R G + EA++G+ L+ L+ H IDL+LT++ MP +
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDG---LKKLSAHAIDLILTDINMPVMD 62
Query: 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIR 184
G+ L+S + S + ++LP+ I + L+ GA ++ KPI+
Sbjct: 63 GLKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 145 (56.1 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANEN 762
DREA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T EN
Sbjct: 284 DREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTETEN 332
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 160 (61.4 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 43/127 (33%), Positives = 67/127 (52%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+++L+ ++DD R ++ LL+ Y VT NG AW+ + DLVLT+VM P ++
Sbjct: 160 VRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHIT 219
Query: 147 GVALLSKIMSHKTRKNLPVII-------FK----CLSKGAVDFLVKPIRKNELKN----L 191
G LL +I H +++PVI+ +K + G DFL KPI K LK +
Sbjct: 220 GFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDTV 279
Query: 192 WQHVWRR 198
Q +W+R
Sbjct: 280 LQSIWQR 286
Score = 38 (18.4 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 488 QVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNN 532
Q + I+ K I N D ++ SS+ + + S++NN
Sbjct: 744 QFMEDPTILVKSKLPKIDEEENRDKVSSSSSSSTAPLTSTSSSNN 788
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 145 (56.1 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 41/121 (33%), Positives = 68/121 (56%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
L S+ VL+V++++ R +++ +L +T A NGL+A ++L D + IDL+L ++ MP
Sbjct: 2 LDSISVLVVDDEEMNRELLSVMLDGLATPIT-AQNGLEALRVL-DKNSAIDLILLDLEMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIF--------KCLSKGAVDFLVKPIRKNELK-NLWQH 194
L+G A L+ + H ++PVI+ + L GA DFL KP EL+ + H
Sbjct: 60 ELNGFATLATLKKHPLWCDIPVIVLTASKDEVTRTLRLGANDFLAKPYDTEELRLRVMNH 119
Query: 195 V 195
V
Sbjct: 120 V 120
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 124 (48.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM- 142
H +LKV+++++ + R LL+N G EV A +G A + D NH ++ ++M
Sbjct: 4 HASALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIAD--NHPRIIFVDIMM 61
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIIFKCL------SKGAV----DFLVKPIRKNEL 188
P L G + I +++ K+ PVI+ +KG + FL KP K EL
Sbjct: 62 PRLDGYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEEL 117
>DICTYBASE|DDB_G0268012 [details] [associations]
symbol:DDB_G0268012 "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 dictyBase:DDB_G0268012 GO:GO:0006355 GO:GO:0035556
EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_647491.1
ProteinModelPortal:Q55FP2 EnsemblProtists:DDB0233892 GeneID:8616298
KEGG:ddi:DDB_G0268012 InParanoid:Q55FP2 OMA:DDHLFKP Uniprot:Q55FP2
Length = 382
Score = 118 (46.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 33/108 (30%), Positives = 55/108 (50%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG- 147
+L+VE+D R + + L+ G+++T A NGLQA +E+ N D++L +V MP + G
Sbjct: 10 ILVVEDDPLNRIIASKFLKKLGHKITLAENGLQAVNAVEN--NKYDIILMDVNMPIMGGK 67
Query: 148 -VALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNEL 188
+ + M R P+I +C+ G D L KP + +L
Sbjct: 68 EATKIIREMQQSLRIKTPIIGLTTVERQECIEAGMDDHLFKPCKFQQL 115
Score = 71 (30.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 466 FSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMD 525
F+ N +N+N NI S + N+ ++ + N + N ++N +NN +
Sbjct: 222 FNNNNNNNNINNNYN-NINSVNSQCNNNNCNNNNNNIYNNYYYNNNNNNNNNNNNNNNNN 280
Query: 526 MGSTTNNAFIKPAGLKNKSEVSSTVN 551
+ NN +K ++E++ VN
Sbjct: 281 NNNNNNNNNNNNNNIKTETEINFVVN 306
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/114 (28%), Positives = 60/114 (52%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ L GYE V EA +G++AW+ L D +++T+ MP +
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKL-DANADTKVLITDWNMPEM 59
Query: 146 SGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELK 189
+G+ L+ K+ S K +P+I + L G +++VKP LK
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/125 (29%), Positives = 65/125 (52%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + + K+LPV++ +K G ++VKP LK
Sbjct: 65 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 124
Query: 194 HVWRR 198
++ R
Sbjct: 125 KIFER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 122 (48.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/125 (29%), Positives = 65/125 (52%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMP 64
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + + K+LPV++ +K G ++VKP LK
Sbjct: 65 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 124
Query: 194 HVWRR 198
++ R
Sbjct: 125 KIFER 129
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 138 (53.6 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 759
+REA V +Y++K+ R F KK+RY+ RK AEQRPRI+G+FV++T+
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKRTS 389
Score = 45 (20.9 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 395 ITKIIDSDKEDTEYEASNKPSKILDINSKSIKD 427
+ ++ D D+E+ E + N SK D + + KD
Sbjct: 240 LKRVKDEDEEEEEAKCENGGSKDSDREASNDKD 272
Score = 44 (20.5 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 310 QDHEERCENFAKRSRDLDVGGQR----SLDLQLEY 340
++ E +CEN + D + + SL L+L+Y
Sbjct: 249 EEEEAKCENGGSKDSDREASNDKDRKTSLFLRLDY 283
Score = 41 (19.5 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 127 LEDLTNHIDLVLTEVMPCL 145
LEDLT ++ +L E CL
Sbjct: 196 LEDLTMDVESLLEEEQLCL 214
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
+VL+V+++ R +V L N GYE EA NG +A K LE T+H D V+ ++M P + G
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLE--TDHYDFVVLDIMMPEMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVWR 197
+++ +I KT ++P+I L GA D++VKP EL + V R
Sbjct: 63 LSVCKEI--RKT-SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 198 R 198
R
Sbjct: 120 R 120
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 713 ADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT-ANEN 762
A+REA V +YR+K+ R F K +RY SRK AE RPRI+G+F ++T + EN
Sbjct: 227 AEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDSREN 277
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/122 (27%), Positives = 64/122 (52%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+ S VL+V++ RHVV+ L VT + +QA L D + +D+++++ MP
Sbjct: 1 MSSPHVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMP 59
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQ 193
++G LL ++ +LPV+I KCL GA D+++KP++ ++ + +
Sbjct: 60 DMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMK 119
Query: 194 HV 195
++
Sbjct: 120 YI 121
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/120 (25%), Positives = 64/120 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ L G++ V EA +G++AW +L + +++T+ MP +
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTK-NEDVKVLITDWNMPEM 59
Query: 146 SGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
+G+ L+ K+ + K +++P+I + L G +++VKP LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 118 (46.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/123 (27%), Positives = 66/123 (53%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ LLR+ G+ T EA +GL A +L+ + D ++T+ MP +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQ--SGAFDFLVTDWNMPGM 58
Query: 146 SGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
+G+ LL ++ + + K+LPV+ I + G ++VKP LK + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 196 WRR 198
+ R
Sbjct: 119 FER 121
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 139 (54.0 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 715 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENT 763
REA+V +Y++K+ R F KK+RYQ RK A+QRPR++G+FVR+ NE+T
Sbjct: 383 REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRRP-NEST 430
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 129 (50.5 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSRE 766
+REA V +YR+KK R F K +RY SRK AE RPRI+G+F ++ E + E
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEE 329
Score = 47 (21.6 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 94 ENDDSTRHVVAALLRNCGYEVTEATNG 120
+ND+ R V + LL N G + NG
Sbjct: 120 DNDEDDREVASWLLPNPGKNIGNQNNG 146
Score = 42 (19.8 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 582 ASSVLV-HPRSTQEQLTQ 598
AS + V HPR+T+E + Q
Sbjct: 244 ASDITVQHPRTTKETIDQ 261
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 128 (50.1 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 23/51 (45%), Positives = 38/51 (74%)
Query: 707 IDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 757
I++ + REA+V +Y++K+ R F KK+RYQ RK A++RPR +G+FV++
Sbjct: 143 IEEKRNMRREASVLRYKEKRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 115 (45.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 34/123 (27%), Positives = 64/123 (52%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+K+L+V++ + R ++ LLR+ G+ T EA +G A +L + ID ++T+ MP +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLN--SGSIDFLVTDWNMPGM 58
Query: 146 SGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
+G+ LL + + + K+LPV+ I + G ++VKP LK + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 196 WRR 198
+ R
Sbjct: 119 FER 121
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 114 (45.2 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 30/110 (27%), Positives = 58/110 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
++ V++ S R +V+ L+ GY+V EA +G A L +D+V+T++ MP L G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG--TRVDMVITDLNMPNLDGI 62
Query: 149 ALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
L+ + ++ T + P+++ S+ GA ++VKP + +L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 114 (45.2 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 30/110 (27%), Positives = 58/110 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
++ V++ S R +V+ L+ GY+V EA +G A L +D+V+T++ MP L G+
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAG--TRVDMVITDLNMPNLDGI 62
Query: 149 ALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
L+ + ++ T + P+++ S+ GA ++VKP + +L
Sbjct: 63 GLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/125 (28%), Positives = 64/125 (51%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R ++ LLR+ G+ T EA +G A +L+ D V+T+ MP
Sbjct: 3 KNMKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQK--GDFDFVVTDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + + K+LPV++ +K G ++VKP LK
Sbjct: 61 GMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLD 120
Query: 194 HVWRR 198
++ R
Sbjct: 121 KIFER 125
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 127 (49.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
V+ V++ R V+ ALLR Y +G +A +IL N + +++T+ MP ++G
Sbjct: 93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEPN-VSMIITDYWMPEMTGY 147
Query: 149 ALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNL 191
LL KI K +PV+I +CL +GA DFL+KP+R ++ +
Sbjct: 148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRI 200
>TIGR_CMR|GSU_0879 [details] [associations]
symbol:GSU_0879 "chemotaxis protein CheV" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
RefSeq:NP_951936.1 ProteinModelPortal:Q74ET0 DNASU:2687281
GeneID:2687281 KEGG:gsu:GSU0879 PATRIC:22024521
HOGENOM:HOG000255028 ProtClustDB:CLSK828077
BioCyc:GSUL243231:GH27-857-MONOMER Uniprot:Q74ET0
Length = 312
Score = 132 (51.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 86 RSLKVLLVENDDS-TRHVVAALLRNCGYEVTEATNGLQAWKILED-----------LTNH 133
RS + +LV +D + R+ + + LR GY V EA NG AW +++D L +
Sbjct: 179 RSQRRILVADDSAFIRNSICSSLRGAGYNVDEAENGEDAWNMIQDKLTRCRAAGVNLRSE 238
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172
+DL++T+V MP + G+ L + + K+LPV+IF L+
Sbjct: 239 LDLLITDVEMPKMDGLHLTTLVKKDDVLKDLPVLIFSSLA 278
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 132 (51.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 758
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 325 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 369
Score = 45 (20.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 490 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 526
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 140 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 177
Score = 42 (19.8 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 219 SKNVENSGNNTGSND 233
SK+ +N+ NN +ND
Sbjct: 147 SKDSDNNNNNNNNND 161
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
ER L + S KV +V D +TR L+ G +V E + G EDL ++L++T
Sbjct: 41 ERLLRVSSCKVTVV--DSATR-----ALQYLGLDVEEKSVGF------EDLK--VNLIMT 85
Query: 140 EV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNEL 188
+ MP ++G LL KI + +PV+I +CL +GA DFL+KP++ +++
Sbjct: 86 DYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDV 145
Query: 189 KNL 191
K L
Sbjct: 146 KRL 148
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 111 (44.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/116 (25%), Positives = 62/116 (53%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+V++V++ R+++ +L + GYEV EA++G +A D+ + + L +MP +G
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRPDV-VTLDIIMPVKNG 62
Query: 148 VALLSKIMSHKTRKNLPV--------IIFKCLSKGAVDFLVKPIRKNELKNLWQHV 195
+ L +IM+ + + + ++ K S GA DF++KP +K++ + V
Sbjct: 63 IEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 132 (51.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 758
DREA V +YR+KK R F K +RY++RK AE RPRI+G+F +++
Sbjct: 337 DREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 381
Score = 45 (20.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 490 VNSLEIIKKGSDCGIQSHSNGD-PLNQSSNGGSNNMDM 526
V+S ++ K SD +++N D N ++N S+N M
Sbjct: 152 VDSWLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGM 189
Score = 42 (19.8 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 219 SKNVENSGNNTGSND 233
SK+ +N+ NN +ND
Sbjct: 159 SKDSDNNNNNNNNND 173
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 128 (50.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++LLV++++S R +AA L G+ V EA NG +A ++LE + +D+VLT++ MP L G
Sbjct: 11 RILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLLEKQS--VDVVLTDIRMPGLHG 68
Query: 148 VALLSKIMSHKTRKNLPVII 167
V LL +I R ++PV++
Sbjct: 69 VELLRRIKQE--RPDMPVVL 86
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 130 (50.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 708 DKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQT 758
+K ++REA V +YR K+ R F KK+RY+ RK A++RPR++G+FVR++
Sbjct: 271 EKRVRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 321
>TIGR_CMR|GSU_2313 [details] [associations]
symbol:GSU_2313 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
Length = 301
Score = 129 (50.5 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/122 (29%), Positives = 67/122 (54%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+++L+ ++D ++R ++ L++ GY+V EA +G QAW+ L+ VL VMP + G
Sbjct: 1 MRILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQKSDAPKLAVLDWVMPVMDG 60
Query: 148 VALLSKIMSHKTRKNLPVI-----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
V ++ ++ + ++ ++LP I + + L GA D++ KP EL+ Q V
Sbjct: 61 VEVIRQVRA-RSAEHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELRARIQ-VG 118
Query: 197 RR 198
RR
Sbjct: 119 RR 120
>TAIR|locus:2018344 [details] [associations]
symbol:AT1G04500 "AT1G04500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009827 "plant-type cell wall modification"
evidence=RCA] [GO:0009860 "pollen tube growth" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:DQ446226 EMBL:AB493431
IPI:IPI00533670 RefSeq:NP_171944.2 UniGene:At.42446
EnsemblPlants:AT1G04500.1 GeneID:839510 KEGG:ath:AT1G04500
TAIR:At1g04500 HOGENOM:HOG000239716 InParanoid:Q1PFY7 OMA:SPSCSFL
PhylomeDB:Q1PFY7 ProtClustDB:CLSN2680683 Genevestigator:Q1PFY7
Uniprot:Q1PFY7
Length = 386
Score = 124 (48.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 705 NRIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTS 764
N++ K R+ + +Y +K+ ER F KK++Y RK LA+ RPR+RG+F + +
Sbjct: 278 NKVGKLSAEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDEFGEPN 337
Query: 765 REPECS 770
R+ CS
Sbjct: 338 RQA-CS 342
Score = 51 (23.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 494 EIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNA 533
E+ + CG ++N + SN GSN D +NA
Sbjct: 43 EVTSASNGCGYVENNNTNNFPDKSNSGSNQ-DHEDNNDNA 81
>TAIR|locus:2195518 [details] [associations]
symbol:AT1G63820 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002684 GenomeReviews:CT485782_GR
HOGENOM:HOG000090374 ProtClustDB:CLSN2681537 EMBL:AK176159
IPI:IPI00542615 RefSeq:NP_176567.2 UniGene:At.50956
EnsemblPlants:AT1G63820.1 GeneID:842685 KEGG:ath:AT1G63820
TAIR:At1g63820 eggNOG:NOG240378 InParanoid:Q67ZF8 OMA:TQRNFTK
PhylomeDB:Q67ZF8 ArrayExpress:Q67ZF8 Genevestigator:Q67ZF8
Uniprot:Q67ZF8
Length = 293
Score = 128 (50.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 706 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSR 765
R+ + +R+ ++KYR K+T+R F K ++Y RK LA+ RPR+RG+F R N+
Sbjct: 183 RVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLADNRPRVRGRFAR---NDEVFE 239
Query: 766 EPE 768
P+
Sbjct: 240 NPK 242
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 20/80 (25%), Positives = 49/80 (61%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ + R+++ L N G+E +A +G++ ++LE ++ D+++T++ MP L G
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQ--SNPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVII 167
+ + ++ + +P+++
Sbjct: 62 FGFIEGVRRNEKYRAIPILV 81
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 31/122 (25%), Positives = 63/122 (51%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
S +VL+V++ R ++ +L GYEV EA NG QA ++ ++L D+V ++ MP
Sbjct: 2 SARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPE 59
Query: 145 LSGVALLSKIMSHKTRKNL--------PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196
+ G+ + +I + ++ + + GA+DF+VKP +++ + ++
Sbjct: 60 MDGIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTL 119
Query: 197 RR 198
+R
Sbjct: 120 KR 121
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 34/125 (27%), Positives = 62/125 (49%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++KVL+V++ + R +V LLR+ G+ + EA +G A +L+ D V+T+ MP
Sbjct: 3 KNMKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQG--GDFDFVVTDWNMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + ++PV++ +K G ++VKP LK
Sbjct: 61 GMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLD 120
Query: 194 HVWRR 198
++ R
Sbjct: 121 KIFER 125
>TIGR_CMR|DET_0130 [details] [associations]
symbol:DET_0130 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034820
RefSeq:YP_180880.1 ProteinModelPortal:Q3ZA69 STRING:Q3ZA69
GeneID:3230504 KEGG:det:DET0130 PATRIC:21607349 OMA:QIVQAKN
ProtClustDB:CLSK837608 BioCyc:DETH243164:GJNF-130-MONOMER
Uniprot:Q3ZA69
Length = 123
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 31/113 (27%), Positives = 57/113 (50%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLS 146
+K+L+ ++++ R +V +L Y++ +A NG +A K E DL+L ++M P L
Sbjct: 4 MKILIADDEEHVRQLVCGILDK-DYQIVQAKNGEEAVK--ESREQDFDLILMDIMMPKLD 60
Query: 147 GVALLSKIMSHKTRKNLPVIIF--------KCLSK--GAVDFLVKPIRKNELK 189
G+A + K +P+++ K LS+ GA ++ KP EL+
Sbjct: 61 GLAACCMLKGDKQTSAIPIVMLTGVGYELNKKLSQQLGADGYITKPFSPRELR 113
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 108 (43.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 20/80 (25%), Positives = 49/80 (61%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ + R+++ L N G+E +A +G++ ++LE ++ D+++T++ MP L G
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQ--SNPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVII 167
+ + ++ + +P+++
Sbjct: 62 FGFIEGVRRNEKYRAIPILV 81
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 130 (50.8 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 715 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 759
REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++++
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRSS 401
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 130 (50.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 712 FAD--REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 759
F D REA V++YR+K+ R F KK+RY+ RK AE+RPR++G+FV++ +
Sbjct: 356 FGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRAS 405
>TIGR_CMR|CPS_0081 [details] [associations]
symbol:CPS_0081 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 RefSeq:YP_266849.1
ProteinModelPortal:Q48AR4 STRING:Q48AR4 DNASU:3523347
GeneID:3523347 KEGG:cps:CPS_0081 PATRIC:21463585
HOGENOM:HOG000276492 OMA:CPEEFYC ProtClustDB:CLSK2309571
BioCyc:CPSY167879:GI48-184-MONOMER Uniprot:Q48AR4
Length = 419
Score = 128 (50.1 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 44/138 (31%), Positives = 69/138 (50%)
Query: 67 MPQEQPQGAMVCWERFLHLRSLK----VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQ 122
+P+E Q A + +R LH + +L+V++ S R+ + LL+ + V A NG+Q
Sbjct: 100 IPKENSQ-AFLYLKRVLHWQQTNNKNTILVVDDSSSARNHIVELLKRRNFNVITANNGVQ 158
Query: 123 AWKILEDLTNH--IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------K 169
A LE L H I +V+T++ MP + G+ L ++I TR+ L VI +
Sbjct: 159 A---LEKLAQHKNIKMVITDLEMPAMDGIELTNEIRRVYTREQLAVIGISGASNGIHSAR 215
Query: 170 CLSKGAVDFLVKPIRKNE 187
+ GA DFL KP E
Sbjct: 216 FIKNGADDFLRKPFCPEE 233
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 108 (43.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 40/133 (30%), Positives = 61/133 (45%)
Query: 79 WERFLHLRSLKVLLVEN------DDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN 132
WE F + LKVLL+ N D S+ + L + Y VT T+ +A +
Sbjct: 11 WENFP--KGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPE 68
Query: 133 HIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKP 182
+ + EV +S + K + + LP I+ KC++ GAV+FL KP
Sbjct: 69 SFHIAIVEVN--MSAESESFKFLE-AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKP 125
Query: 183 IRKNELKNLWQHV 195
+ +LKN+WQHV
Sbjct: 126 LSPEKLKNIWQHV 138
Score = 68 (29.0 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 33/161 (20%), Positives = 61/161 (37%)
Query: 323 SRDLDVGGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSK----LSEQIDRGQLDLNSE 378
SR LD Q +++ +E S K + D+G SK + ++D ++ + E
Sbjct: 189 SRLLDGDCQENINFSMENVNSSTEK---DNMEDHQDIGESKSVDTTNRKLDDDKVVVKEE 245
Query: 379 SPSSKLKYEA--AKLAGAITKIIDSDKEDTEYEASNKPSKILDINSKSIKDSXXXXXXXX 436
S+ + E L T +D K++ E + NK S I +++
Sbjct: 246 RGDSEKEEEGETGDLISEKTDSVDIHKKEDETKPINKSSGIKNVSGNKTSRKKVDWTPEL 305
Query: 437 XXXXXXGVKDIGTTIQDDRNVLRRSDSSAFSRYNTASNVNK 477
V+ +G +L +R+N AS++ K
Sbjct: 306 HKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQK 346
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 132 (51.5 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 757
DREA V +YR+KK R F K +RY SRK AE+RPRI+G+F ++
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
Score = 37 (18.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 224 NSGNNTGSND 233
NSG N+G+N+
Sbjct: 146 NSGKNSGNNN 155
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 105 (42.0 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPCL 145
+KVL+V++ + R + + +EV EA NGL+A LE + N DL+ +V MP +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEA---LEKVLNGEFDLMTVDVNMPKM 57
Query: 146 SGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
G + K+ + +LPVI+ SK GA +LVKP+ ++
Sbjct: 58 DGYTFVYKV--REMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 105 (42.0 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSG 147
VL+V++ S R VV L++ GY+V EA +G A L LT + L++++V MP + G
Sbjct: 5 VLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDA---LGKLTGQKVHLIISDVNMPNMDG 61
Query: 148 VALLSKIMSHKTRKNLPVII 167
+ + ++ + K P+I+
Sbjct: 62 ITFVKEVKKLASYKFTPIIM 81
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 105 (42.0 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPCL 145
+KVL+V++ + R + + +EV EA NGL+A LE + N DL+ +V MP +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEA---LEKVLNGEFDLMTVDVNMPKM 57
Query: 146 SGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
G + K+ + +LPVI+ SK GA +LVKP+ ++
Sbjct: 58 DGYTFVYKV--REMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 40/120 (33%), Positives = 62/120 (51%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S VL+VE+D TR ++ +N GY+VTEA +G Q + LE N IDLVL ++ +P
Sbjct: 2 SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGE 59
Query: 146 SGVALLSKIMSHK-------TRKNLPVIIFKCLSKGAVDFLVKPIRKNELK-NLWQHVWR 197
G+ L ++ S T + + L GA D++ KP+ EL+ + +WR
Sbjct: 60 DGLLLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWR 119
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 40/120 (33%), Positives = 62/120 (51%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S VL+VE+D TR ++ +N GY+VTEA +G Q + LE N IDLVL ++ +P
Sbjct: 2 SYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGE 59
Query: 146 SGVALLSKIMSHK-------TRKNLPVIIFKCLSKGAVDFLVKPIRKNELK-NLWQHVWR 197
G+ L ++ S T + + L GA D++ KP+ EL+ + +WR
Sbjct: 60 DGLLLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWR 119
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 119 (46.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTANENTSREPE 768
+++ + KYR K+ R F K+++Y+ RK LA+ RPRIRG+F R N+ S++ +
Sbjct: 162 EKKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFAR---NDEISQQEQ 213
Score = 43 (20.2 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 486 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAF 534
A++ V+ G + G S S P + S G S M +++N F
Sbjct: 55 AAEAVSGFGYFDSGMNGGGGSSSCDSPSSMGSGGESLVMQRSVSSHNGF 103
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 36/114 (31%), Positives = 63/114 (55%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++D+ R +++ G+E A NG A + D+ H D+VL ++ MP + G
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDG 63
Query: 148 VALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNL 191
+ L ++ SH+TR PVI+ + L GA D+++KP +EL NL
Sbjct: 64 IKALKEMRSHETRT--PVILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL-NL 114
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S K+L+V++ + R +V A L++ Y+VT A +G +A + + D +LT+ MP +
Sbjct: 2 SKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCS--SQRFDFILTDQNMPRM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIIF--------KCLSK--GAVDFLVKPIRKNEL 188
G+ L+ + P+I+ K K GA ++VKP +L
Sbjct: 60 DGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
S K+L+V++ + R +V A L++ Y+VT A +G +A + + D +LT+ MP +
Sbjct: 2 SKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCS--SQRFDFILTDQNMPRM 59
Query: 146 SGVALLSKIMSHKTRKNLPVIIF--------KCLSK--GAVDFLVKPIRKNEL 188
G+ L+ + P+I+ K K GA ++VKP +L
Sbjct: 60 DGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKL 112
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 32/113 (28%), Positives = 59/113 (52%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKP 182
++L++T+ MP ++G LL KI +++PV+I +CL +GA +F +KP
Sbjct: 69 VNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKP 128
Query: 183 IRKNELKNLWQHVWR-RC--HXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSN 232
+R +++ L H+ + RC H +++ S + ENS ++T SN
Sbjct: 129 VRLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNS-SNPTSENSSSSTSSN 180
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 102 (41.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKP 182
++L++T+ MP ++G LL ++ + K++PV+I +CL GA +F +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKP 133
Query: 183 IRKNELKNLWQHVWRR 198
++ ++K L H+ +R
Sbjct: 134 VKLADMKKLKSHLLKR 149
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL 127
VL V++ R ++ LL+N Y+VT +G +A ++L
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 125 (49.1 bits), Expect = 0.00018, P = 0.00018
Identities = 36/112 (32%), Positives = 58/112 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE+D R + LL+ GYEV +G + K LE H LV+T+ VMP +SG
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLEKQEYH--LVITDLVMPGMSG 60
Query: 148 VALLSKIMSHKTR---------KNLPVIIFKCLSKGAVDFLVKPIRKNELKN 190
+ +LS++ NL ++ L GA D+++KP +E K+
Sbjct: 61 IEVLSRVKQKAPNVDVILVTGHANLESAVY-ALKNGARDYILKPFNHDEFKH 111
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+L+V+++ R+++ L+N GY+V +A +G + ++LE+ N + LV+ ++M P + G+
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEE--NEVHLVVLDIMMPKVDGI 63
Query: 149 ALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNEL 188
+ KI + K +P+I+ L+ GA D++ KP EL
Sbjct: 64 HMCMKI---REEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLEL 110
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 126 (49.4 bits), Expect = 0.00030, P = 0.00030
Identities = 42/133 (31%), Positives = 67/133 (50%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
E+ + +R L VLLV++ +R VV+ LL + G+ VT A +G++A + DLVL
Sbjct: 538 EKSVAVRPLSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIG--REAFDLVLM 595
Query: 140 EV-MPCLSGVALLSKIMSHKTR--KNLPVIIFK----------CLSKGAVDFLVKPIRKN 186
+V MP + G + I + + LP+I CL GA D+L KP+ +
Sbjct: 596 DVQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFS 655
Query: 187 ELKNLWQHVWRRC 199
EL+ + + R C
Sbjct: 656 ELRRV---ISRHC 665
>TAIR|locus:2177911 [details] [associations]
symbol:AT5G41380 "AT5G41380" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY800647 EMBL:AY924846
IPI:IPI00519705 RefSeq:NP_198954.2 UniGene:At.51252
EnsemblPlants:AT5G41380.1 GeneID:834140 KEGG:ath:AT5G41380
TAIR:At5g41380 HOGENOM:HOG000090374 InParanoid:Q5Q0A4 OMA:VVEIPNI
PhylomeDB:Q5Q0A4 ProtClustDB:CLSN2681537 Genevestigator:Q5Q0A4
Uniprot:Q5Q0A4
Length = 307
Score = 120 (47.3 bits), Expect = 0.00031, P = 0.00031
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 706 RIDKNKFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 756
++ + +R+ ++KYR K+ +R F K ++Y RK LA+ RPRIRG+F R
Sbjct: 206 KVGRYSAEERKEKISKYRAKRNQRNFTKTIKYACRKTLADSRPRIRGRFAR 256
>UNIPROTKB|Q9KM66 [details] [associations]
symbol:cqsS "CAI-1 autoinducer sensor kinase/phosphatase
CqsS" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 39/114 (34%), Positives = 62/114 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ S R A LL GYEV +A +G + K +E + +IDLVL ++ MP + G
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHME--SQNIDLVLMDIEMPNVGG 626
Query: 148 VALLSKIM-SHKTRKNLPVIIF------KCLS----KGAVDFLVKPIRKNELKN 190
+ I S KN+P+I + K L+ G DF+VKP ++ L N
Sbjct: 627 LEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>TIGR_CMR|VC_A0522 [details] [associations]
symbol:VC_A0522 "sensor histidine kinase/response
regulator LuxN" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 39/114 (34%), Positives = 62/114 (54%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ S R A LL GYEV +A +G + K +E + +IDLVL ++ MP + G
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHME--SQNIDLVLMDIEMPNVGG 626
Query: 148 VALLSKIM-SHKTRKNLPVIIF------KCLS----KGAVDFLVKPIRKNELKN 190
+ I S KN+P+I + K L+ G DF+VKP ++ L N
Sbjct: 627 LEATRLIRNSEHEYKNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 99 (39.9 bits), Expect = 0.00039, P = 0.00039
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+ VL+V++D + +V+ LL + EVT A+ G +A I+ T D+V+T+ MP ++
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVRKTT--FDMVITDFSMPGMN 61
Query: 147 GVALLSKIMSHKTRKNLPVIIFKC 170
G+ L + + + +LPV++ C
Sbjct: 62 GLELAAAVK--ELHPDLPVMMVTC 83
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 125 (49.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 715 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 757
REA++ +Y++K+ R F K++RYQ RK AE+RPR++G+FV++
Sbjct: 294 REASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKR 336
Score = 37 (18.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 15/64 (23%), Positives = 26/64 (40%)
Query: 486 ASQVVNSLEIIKKGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSE 545
AS VV + + S I+ N + + S+N+D KP L K E
Sbjct: 6 ASPVVGEEKQSTRSSK-RIKKRKNREATTTMEDKSSSNLDASRKIRTKTKKPKFLSLKLE 64
Query: 546 VSST 549
++++
Sbjct: 65 LNTS 68
>TIGR_CMR|SPO_1953 [details] [associations]
symbol:SPO_1953 "phosphate regulon transcriptional
regulatory protein PhoB" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HOGENOM:HOG000034819 KO:K07657
TIGRFAMs:TIGR02154 RefSeq:YP_167188.1 ProteinModelPortal:Q5LS17
GeneID:3193549 KEGG:sil:SPO1953 PATRIC:23377237 OMA:STLMEKP
ProtClustDB:CLSK933701 Uniprot:Q5LS17
Length = 229
Score = 116 (45.9 bits), Expect = 0.00042, P = 0.00042
Identities = 35/109 (32%), Positives = 60/109 (55%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
VL+VE++ + R V+A L G+ V A NG +A ++++ T I +VL +MP LSG+
Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDI-IVLDWMMPNLSGIE 66
Query: 150 LLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
+ ++ + +++PVI+ S+ GA D++VKP EL
Sbjct: 67 VCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVEL 115
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 120 (47.3 bits), Expect = 0.00045, P = 0.00045
Identities = 35/103 (33%), Positives = 53/103 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLV++D R + L+ GY+V EA NGL + L D + DL+L ++ MP L+G+
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRD--HEPDLILCDLSMPVLNGI 84
Query: 149 ALLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKPI 183
+ ++ S L V+ + K L G DFL KPI
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 120 (47.3 bits), Expect = 0.00045, P = 0.00045
Identities = 35/103 (33%), Positives = 53/103 (51%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+LLV++D R + L+ GY+V EA NGL + L D + DL+L ++ MP L+G+
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRD--HEPDLILCDLSMPVLNGI 84
Query: 149 ALLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKPI 183
+ ++ S L V+ + K L G DFL KPI
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 42/154 (27%), Positives = 71/154 (46%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
+SL +L+VE+ S +A + + G+ + AT G Q ++ LTNH DLV+ ++ +P
Sbjct: 4 QSLYILVVEDQQSIAQNIANYMEDKGHVLDFATQGDQGLELA--LTNHYDLVILDLNLPV 61
Query: 145 LSGVALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQH 194
+ G+ + K+ + R ++P+I+ + GA D+L KP EL+
Sbjct: 62 MDGLEVCKKLRK-QARHHVPIIMLTARDSIDDKISGFTLGADDYLTKPFSLEELEVRCFA 120
Query: 195 VWRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNN 228
+ RR H Q K + V SG N
Sbjct: 121 LSRR-HLLQTNDTLIFDQLCIDRKRQQVTRSGQN 153
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 114 (45.2 bits), Expect = 0.00049, P = 0.00049
Identities = 48/166 (28%), Positives = 78/166 (46%)
Query: 80 ERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139
ER L + S KV VE+ TR L+ G + + + L+ DL ++L++T
Sbjct: 40 ERLLRISSCKVTTVES--GTR-----ALQYLGLDGGKGASNLK------DLK--VNLIVT 84
Query: 140 EV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNEL 188
+ MP LSG LL KI + +PV+I +CL +GA +FL+KP++ ++
Sbjct: 85 DYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADV 144
Query: 189 KNLWQHVWRRCHXXXXXXXXXCTQTQKSIKSKNVENSGNNTGSNDE 234
K + Q + R C S K K E+S ++ S+D+
Sbjct: 145 KRIKQLIMRN-------EAEECKILSHSNKRKLQEDSDTSSSSHDD 183
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ S R +V+ L++ GYEV A +G +A + + D+++++V MP ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 148 VALLSKIMSHKTRKNLPVIIF--------KCLSK--GAVDFLVKPIRKNELKNLWQHV 195
+ + K P+++ K K GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 31/112 (27%), Positives = 55/112 (49%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KV++V++ + R ALL G + EA+NG++A + L +DL L ++ MP + G
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELK 189
L+ +I +P ++ S+ GA ++VKP+ EL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 31/112 (27%), Positives = 55/112 (49%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KV++V++ + R ALL G + EA+NG++A + L +DL L ++ MP + G
Sbjct: 4 KVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALE--RALEMPVDLFLVDINMPKMDG 61
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELK 189
L+ +I +P ++ S+ GA ++VKP+ EL+
Sbjct: 62 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 98 (39.6 bits), Expect = 0.00050, P = 0.00050
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL V++ S R +V+ L++ GYEV A +G +A + + D+++++V MP ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 148 VALLSKIMSHKTRKNLPVIIF--------KCLSK--GAVDFLVKPIRKNELKNLWQHV 195
+ + K P+++ K K GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 123 (48.4 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQ 757
DREA V +YR+K+ R F K +RY SRK AE RPR+ G+F ++
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR 348
Score = 39 (18.8 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 498 KGSDCGIQSHSNGDPLNQSSNGGSNNMDMGSTTNNAFI 535
+G C Q + + + S+G N D GS +NA+I
Sbjct: 222 RGHQCHNQQNFQFN-IKYGSSGTHYN-DNGSINHNAYI 257
>TAIR|locus:2132902 [details] [associations]
symbol:AT4G27900 "AT4G27900" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002687 EMBL:AL161572 EMBL:AL035524 EMBL:AY062469
EMBL:AY093297 IPI:IPI00527124 PIR:T02891 RefSeq:NP_194519.1
RefSeq:NP_849461.1 UniGene:At.26998 IntAct:Q9SUE8 PRIDE:Q9SUE8
EnsemblPlants:AT4G27900.1 EnsemblPlants:AT4G27900.2 GeneID:828903
KEGG:ath:AT4G27900 TAIR:At4g27900 HOGENOM:HOG000241629
InParanoid:Q9SUE8 OMA:ISCTSED PhylomeDB:Q9SUE8
ProtClustDB:CLSN2685530 Genevestigator:Q9SUE8 Uniprot:Q9SUE8
Length = 261
Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 714 DREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVR 756
DR +++YR KK++R F +K++Y RK LA+ +PRIRG+F +
Sbjct: 213 DRREKLSRYRNKKSKRNFGRKIKYACRKALADSQPRIRGRFAK 255
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 97 (39.2 bits), Expect = 0.00063, P = 0.00063
Identities = 25/111 (22%), Positives = 57/111 (51%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
+VL V++ + R+++ L N G+E +A +G++ + L+ T + D+++T++ MP L G
Sbjct: 4 RVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLD--TANPDVIVTDINMPRLDG 61
Query: 148 VALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNEL 188
+ + + + +P+++ + GA ++VKP +L
Sbjct: 62 FGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKL 112
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 97 (39.2 bits), Expect = 0.00063, P = 0.00063
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+KVL+V++ ++R +++ L G+ ++T A +G Q KI+E +H LV+++ MP +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 146 SGVALLSKIMSHKTRKNLPVII 167
G+ L + ++ T K II
Sbjct: 65 DGLGFLHAVRANPTTKKAAFII 86
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 97 (39.2 bits), Expect = 0.00063, P = 0.00063
Identities = 29/111 (26%), Positives = 59/111 (53%)
Query: 90 VLLVENDDSTRHVVAALLRNCGY---EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
VL+V++ + R +++ LR G E+ EA +G++ +L + +DL+L+++ MP +
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKS--VDLILSDINMPNM 61
Query: 146 SGVALLSKIMS--HK------TRKNLPVIIFKCLSKGAVDFLVKPIRKNEL 188
G+ + + + HK T + I+ + +S GA D + KP ++L
Sbjct: 62 DGLEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 97 (39.2 bits), Expect = 0.00063, P = 0.00063
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+KVL+V++ ++R +++ L G+ ++T A +G Q KI+E +H LV+++ MP +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 146 SGVALLSKIMSHKTRKNLPVII 167
G+ L + ++ T K II
Sbjct: 65 DGLGFLHAVRANPTTKKAAFII 86
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 115 (45.5 bits), Expect = 0.00068, P = 0.00068
Identities = 34/110 (30%), Positives = 54/110 (49%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
+LLVE+D S V+ L G+ VT G +++ N D+VL +VM P L+G+
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKK--NTTDIVLLDVMLPGLNGI 61
Query: 149 ALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNEL 188
+ I H+ K +P+I+ L GA D+++KP+R L
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRAL 111
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00079, P = 0.00079
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 213 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 268
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 269 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 328
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 329 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 388
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 389 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 447
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 448 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 507
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 508 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 567
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 568 SPRQVLLDKRDDLVASSVLVHPRSTQ 593
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 125 (49.1 bits), Expect = 0.00079, P = 0.00079
Identities = 66/386 (17%), Positives = 157/386 (40%)
Query: 213 TQKSIKSKNVENSGNNTGSNDEXXXXXXXXXXXXXXXXXXXTQSSWTKKAV----EVDSP 268
+ + S + +S + S+ E ++ S + + V EV S
Sbjct: 351 SSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSS 410
Query: 269 RHMSPSDQLAECPDSTCAQVIHSNAEITGSRRVPVTAAKECQDHEERCENFAKRSRDLDV 328
+S S +++ + + + + S++++ S V V+++ E E + ++ S +V
Sbjct: 411 SEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEV-VSSSSEVSSSSEVVSSSSEVSSSSEV 469
Query: 329 GGQRSLDLQLEYQTESPIKLVGTKKTNRLDLGSSKLSEQIDRGQLDLNSESPSSKLKYEA 388
+ + + S I ++ ++ S SE ++ +S SS + +
Sbjct: 470 SSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSS 529
Query: 389 AKLAGAITKIIDSDK-EDTEYEASNKPSKILDINSKSIKDSXXXXXXXXXXXXXXGVKDI 447
+ + +++I S + + E S+ S+++ +S + S V
Sbjct: 530 SSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS-SSSEVSSSSEVVSSSSEVSSSSEVSS- 587
Query: 448 GTTIQDDRNVLRRSDSSAFSRYNTASNVNKGPGGNIESASQVVNSLEIIKKGSDCGIQSH 507
+ + V+ S+ + S +S+ + S+S+V +S E+ S + S
Sbjct: 588 SSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEV---SSSSEVSSS 644
Query: 508 SNGDPLNQSSNGGSNNMDMGSTTNNAFIKPAGLKNKSEVSSTVNCLHSSSFQPTKNDLLC 567
S + SS S++ ++ S+++ + + + SEV S+ + + SSS + + + +
Sbjct: 645 SQ---VTSSSEIVSSSSEVSSSSSEVVSSSSEVSSSSEVVSSSSEVSSSS-EVSSSSEVS 700
Query: 568 SPRQVLLDKRDDLVASSVLVHPRSTQ 593
S QV+ ++V+SS V S++
Sbjct: 701 SSSQVI--SSSEVVSSSSEVVSSSSE 724
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 122 (48.0 bits), Expect = 0.00097, P = 0.00097
Identities = 43/159 (27%), Positives = 75/159 (47%)
Query: 50 DVK-DGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLR 108
DV+ E A T V+ P E + +V E + +++V++D + L+
Sbjct: 739 DVQLSNLEVAATVDEVI--PAEVIEETIVLPEANNVFQEKTIMIVDDDHRNIFALQNALK 796
Query: 109 NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNLPVII 167
+ A NGL+ +IL++ TN IDL+L ++M P + G + I + +P+I
Sbjct: 797 KQHANIITAQNGLECLEILKNNTN-IDLILMDIMMPNMDGYETMEHIRMNLGLHEIPIIA 855
Query: 168 F----------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196
KCLS GA D++ KP+ ++L ++ VW
Sbjct: 856 LTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMS-VW 893
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.127 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 770 677 0.00078 121 3 11 23 0.47 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 103
No. of states in DFA: 623 (66 KB)
Total size of DFA: 353 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 63.04u 0.09s 63.13t Elapsed: 00:00:03
Total cpu time: 63.05u 0.09s 63.14t Elapsed: 00:00:03
Start: Sat May 11 08:55:01 2013 End: Sat May 11 08:55:04 2013
WARNINGS ISSUED: 1