BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004184
(770 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 18/128 (14%)
Query: 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV- 141
+H S +L++++D+ R +AA L + ++V +A NGLQ +I E + DLV+ ++
Sbjct: 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLR 58
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNL 191
P + G+ L+ +I +T P+I+ + L GA D+L+KP+ E +
Sbjct: 59 XPQIDGLELIRRI--RQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAV 113
Query: 192 WQHVWRRC 199
+H RR
Sbjct: 114 LEHSVRRA 121
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITAWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELK 189
++G+ L+ K+ S K +P+I + L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
H S +L++++D+ R +AA L + ++V +A NGLQ +I E + DLV+ ++
Sbjct: 2 HKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE--SEQPDLVICDLRX 59
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLW 192
P + G+ L+ +I +T P+I+ + L GA D+L+KP+ E +
Sbjct: 60 PQIDGLELIRRI--RQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVL 114
Query: 193 QHVWRRC 199
+H RR
Sbjct: 115 EHSVRRA 121
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLXIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVIIFK----------CLSKGAVDFLVKPIRKNELKNLWQHV 195
G +L K+ + K +PVI+ LS GA + KP ++ +H+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELK 189
++G+ L+ K+ S K +P+I + L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEVMP 143
L S+K+L+V++ + R ++ L GYE V EA +G++AW+ L+ + L+ MP
Sbjct: 3 LGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMP 62
Query: 144 CLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELK 189
++G+ L+ K+ S K +P+I + L G +++VKP LK
Sbjct: 63 EMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S KVLLV++ R +V+ L+ GYEV EA NG A + L + T + +VL +MP +
Sbjct: 2 SKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDL-IVLDIMMPVMD 60
Query: 147 GVALLSKIMSHKTRKNLPVIIFK----------CLSKGAVDFLVKPIRKNELKNLWQHV 195
G +L K+ + K +PVI+ LS GA + KP ++ +H+
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 14/125 (11%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++K+L+V++ + R +V LLR+ G+ T EA +GL A +L+ D V+T+ MP
Sbjct: 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMP 68
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + + K+LPV++ +K G ++VKP LK
Sbjct: 69 GMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLD 128
Query: 194 HVWRR 198
++ R
Sbjct: 129 KIFER 133
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAW-KILEDLTNHIDLVLTEVMPCLSGV 148
+L+V++DD+ + +LR GYEV A +G +A +I ++L + L+ ++P + G
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLPDA--LICDVLLPGIDGY 64
Query: 149 ALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNEL 188
L ++ H K LP++ GA D+L KP EL
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142
+ L VL+ E++D R V A L C ++T TNGLQA + ++ D+++ ++ M
Sbjct: 7 QIMPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQM 64
Query: 143 PCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVD----------FLVKPIRKNELKNLW 192
P + G+ +S+I +++ N ++ +D ++ KP+ N+L++
Sbjct: 65 PVMDGLEAVSEIRNYERTHNTKRASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRD-- 122
Query: 193 QHVWRRCH 200
V CH
Sbjct: 123 --VVLTCH 128
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ +MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + LPV++ L+K GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 194 HVWRR 198
++ +
Sbjct: 121 KIFEK 125
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 13/111 (11%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+++++ + + LL G EV A++ + +I + N ID+V+T++ MP LSG
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 148 VALLSKIMSHKTRKNLPVIIFK----------CLSKGAVDFLVKPIRKNEL 188
+ +L +I K ++ VII + +GA ++L KP+ +L
Sbjct: 65 MDILREI--KKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGV 148
VL+VE+++S +A LLR G+E T T+G A + E D+VL ++M P +SG
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAA--LAEFDRAGADIVLLDLMLPGMSGT 64
Query: 149 ALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVWRR 198
+ ++ + R ++PVI+ L GA D++ KP EL + V RR
Sbjct: 65 DVCKQL---RARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEVM-PC 144
S ++L+V++ ++ ++ A L YEV+ A +G A + DL D++L +VM P
Sbjct: 2 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP---DIILLDVMMPG 58
Query: 145 LSGVALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPI 183
+ G + K+ T +++PV++ L GA DFL KPI
Sbjct: 59 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 15/109 (13%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKIL-EDLTNHIDLVLTEVM-PC 144
S ++L+V++ ++ ++ A L YEV+ A +G A + DL D++L +VM P
Sbjct: 1 SARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP---DIILLDVMMPG 57
Query: 145 LSGVALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPI 183
+ G + K+ T +++PV++ L GA DFL KPI
Sbjct: 58 MDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144
R+ ++L+VE+ + + +L GY+ NG +A + L DL++++V MP
Sbjct: 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLS--LTRPDLIISDVLMPE 63
Query: 145 LSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKP 182
+ G AL + + +PVI+ LS GA DF+ KP
Sbjct: 64 MDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKP 111
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+VL+V++ R ++ ++ GYEV EATNG +A + ++L I + + MP ++G
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI-VTMDITMPEMNG 61
Query: 148 VALLSKIMSHKTRKNLPV--------IIFKCLSKGAVDFLVKPIRKNEL 188
+ + +IM + V ++ + + GA DF+VKP + + +
Sbjct: 62 IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRV 110
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSG 147
+VL+V++ R ++ ++ GYEV EATNG +A + ++L I + + MP ++G
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDI-VTMDITMPEMNG 62
Query: 148 VALLSKIMSHKTRKNLPV--------IIFKCLSKGAVDFLVKPIRKNEL 188
+ + +IM + V ++ + + GA DF+VKP + + +
Sbjct: 63 IDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRV 111
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 45 SSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVA 104
+ I+ED ++ A V + + Q A+ R + ++VL+V++ ++RH
Sbjct: 82 ADISEDKREAWLEAGVLDYVXKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTX 141
Query: 105 ALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSGVALLSKIMSHKTRKNL 163
A LR +V EA++ +A LE I LVL + P + G++L+ + +++ L
Sbjct: 142 AQLRKQLLQVHEASHAREALATLEQ-HPAIRLVLVDYYXPEIDGISLVRXLRERYSKQQL 200
Query: 164 PVIIF----------KCLSKGAVDFLVKPIRKNELK 189
+I + L +GA DFL +P EL+
Sbjct: 201 AIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 14/125 (11%)
Query: 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTE-VMP 143
+ LK L+V+++ + R +V LL+ G+ V EA +G+ A L+ V+++ +MP
Sbjct: 3 KELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQ--AGGYGFVISDWMMP 60
Query: 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKNLWQ 193
+ G+ LL I + LPV++ +K GA ++VKP L+
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKPFTAATLEEKLN 120
Query: 194 HVWRR 198
++ +
Sbjct: 121 KIFEK 125
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS 146
+VL+ E++ R +A +LR GYE+ EA +G +A ++ E + DLV+ +V MP
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE--LHKPDLVIMDVKMPRRD 72
Query: 147 GVALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNEL 188
G+ S+I S ++ P+++ S+ GA+ +LVKP ++L
Sbjct: 73 GIDAASEIAS---KRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ LR GYEV A +G +A +++E+L DL+L ++M P G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDG 61
Query: 148 VALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNEL 188
V + ++ + + ++P+I+ L GA D++ KP EL
Sbjct: 62 VEVCREV---RKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 16/111 (14%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ LR GYEV A +G +A +++E+L DL+L ++M P G
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDG 61
Query: 148 VALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNEL 188
V + ++ + + ++P+I+ L GA D++ KP EL
Sbjct: 62 VEVCREV---RKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V++++S ++ L GY+V A++G +A K E T DL++ +VM P L G
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE--TEKPDLIVLDVMLPKLDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVWR 197
+ + ++ K P+++ L GA D++ KP E+ + + R
Sbjct: 63 IEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILR 120
Query: 198 R 198
R
Sbjct: 121 R 121
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE + R +V +L G++ EA + A L + DL+L E ++P SG
Sbjct: 4 RILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLEWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197
+ + + +++PV++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 198 R 198
R
Sbjct: 122 R 122
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Query: 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143
+++ +L+VE++ TR+ + ++ GY+V EAT+G + +IL + I+LV+ ++ +P
Sbjct: 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLP 58
Query: 144 CLSGVALLSKIMSHK-------TRKNLPVIIFKCLSKGAVDFLVKPIRKNEL 188
+G+ L ++ T ++ V L GA D++ KP EL
Sbjct: 59 GKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE++ R +V +L G++ EA + A L + DL+L + ++P SG
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197
+ + + +++PV++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 198 R 198
R
Sbjct: 122 R 122
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-VMPCLSG 147
++L+VE++ R +V +L G++ EA + A L + DL+L + ++P SG
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSG 61
Query: 148 VALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197
+ + + +++PV++ + L GA D++ KP EL + V R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 198 R 198
R
Sbjct: 122 R 122
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV 148
+L+VE++ TR+ + ++ GY+V EAT+G + +IL + I+LV+ ++ +P +G+
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEYD--INLVIXDINLPGKNGL 63
Query: 149 ALLSKIMSHK-------TRKNLPVIIFKCLSKGAVDFLVKPIRKNEL 188
L ++ T ++ V L GA D++ KP EL
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTN---HIDLVLTEV- 141
S+K+L+VE++ + V+ +L G E E A +G +A+ +++LT+ + +++ +V
Sbjct: 1 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 60
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNL 191
MP + G+ L +K++ P++ I +CL G FL KPI++ +LK +
Sbjct: 61 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
Query: 192 W 192
Sbjct: 120 L 120
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTN---HIDLVLTEV- 141
S+K+L+VE++ + V+ +L G E E A +G +A+ +++LT+ + +++ +V
Sbjct: 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 61
Query: 142 MPCLSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNELKNL 191
MP + G+ L +K++ P++ I +CL G FL KPI++ +LK +
Sbjct: 62 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
Query: 192 W 192
Sbjct: 121 L 121
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 60
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 61 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 37.7 bits (86), Expect = 0.025, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 20/113 (17%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L++E+D +V+ L + GY V A + +++ +H DL+L ++ +P G
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNG--LIKAREDHPDLILLDLGLPDFDG 96
Query: 148 VALLSKIMSHKTRKN--LPVIIF----------KCLSKGAVDFLVKPIRKNEL 188
++ ++ RKN LP+I+ + L GA D+L+KP +EL
Sbjct: 97 GDVVQRL-----RKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
++L+V++D S ++ +LR G++ +G QA + +L DLVL ++M P ++G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNG 64
Query: 148 VALLSKIMSHK-------TRKNLPVIIFKCLSKGAVDFLVKPIRKNE 187
+ + + + T K V + L GA D+++KP + E
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL + +P + G
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLXMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 64
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 65 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 59/110 (53%), Gaps = 13/110 (11%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ + R ++ L+ GYE+ A NG +A K + + DLV+ ++ MP +SG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF--FSGNYDLVILDIEMPGISG 60
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK--------GAVDFLVKPIRKNELK 189
+ + +I K +K+ +I+ S A +++VK +ELK
Sbjct: 61 LEVAGEI--RKKKKDAKIILLTAYSHYRSDLSSWAADEYVVKSFNFDELK 108
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ +L ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
K+L+V+++ ++ + GYEV A NG +A + E I ++L ++P + G+
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDI-IILXLMLPEIDGL 61
Query: 149 ALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVWRR 198
+ I + ++P+++ L GA D++ KP EL+ + + RR
Sbjct: 62 EVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 35.8 bits (81), Expect = 0.096, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
V +V++D S R + LLR+ G+EV E + + H LVL MP +SG+
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEV-ETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIE 65
Query: 150 LLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNEL 188
L ++ + +P++ + + GA++FL KP + L
Sbjct: 66 LQEQLTA--ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVM-PCLSG 147
K+L+V+++ ++ + GYEV A NG +A + E D+++ ++M P + G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE--AEQPDIIILDLMLPEIDG 60
Query: 148 VALLSKIMSHKTRKNLPVIIFKC----------LSKGAVDFLVKPIRKNELKNLWQHVWR 197
+ + I + ++P+++ L GA D++ KP EL+ + + R
Sbjct: 61 LEVAKTI---RKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 198 R 198
R
Sbjct: 118 R 118
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLV-LTEVMPCLS 146
+ VL++E+D R ++ L G +V A G +A+K+L + H ++V L ++P ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLXLLLPDVN 58
Query: 147 GVALLSKIMSHKTRKNLPVII--------FKCLSKGAVDFLVKPIRKNELK 189
G+ +L I + VI + + GA DFL KP E++
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIE 109
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 88 LKVLLVENDDSTRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLV-LTEVMPCL 145
VL+V++ T + + + G+ + + A +G +A ++ +ID+V L MP +
Sbjct: 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKM 96
Query: 146 SGVALLSKIMSHKTRKNLPVIIFK----------CLSKGAVDFLVKPIRKNEL 188
G+ LS IM KN VI+ CL KGA F+VKP+ + ++
Sbjct: 97 DGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKV 147
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
KVL+VE+++ + LL GYE + GL A I + N DL+L ++ +P +SG
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISG 60
Query: 148 VALLSKIMSHKTRKNLPVI 166
+ + + ++PV+
Sbjct: 61 LEVTKWLKEDDDLAHIPVV 79
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145
+LK+L+VE+D R ++ ++ N EV A +G + ++ + D+++T++ P L
Sbjct: 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG--LHAPDVIITDIRXPKL 64
Query: 146 SGVALLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKPIRKNEL 188
G+ L +I + + + VI K + G FL KPI L
Sbjct: 65 GGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRL 115
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+V++ R ++ + GY+ +A NGLQA I+ DLVL ++ +P + G
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDG 62
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK----------GAVDFLVKPIRKNELKN 190
+ + ++ +N+ VII + GA+ KP +E+++
Sbjct: 63 IEIAKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 39/143 (27%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+LLVE++ V ++++ G+ + A NG++A + ++ DLVL +V MP L G
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAIN--SSSYDLVLMDVCMPVLDG 67
Query: 148 VALLSKIMSHKTRKN--------------------------LPVIIF----------KCL 171
+ I S++ N LP+I +C
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 172 SKGAVDFLVKPIRKNELKNLWQH 194
+ G F+ KP+ +L+ Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 33.5 bits (75), Expect = 0.47, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
++L+V+++ + R ++ L+ GYE+ A NG +A K + + DLV+ ++ P +SG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKF--FSGNYDLVILDIEXPGISG 60
Query: 148 VALLSKIMSHKTRKNLPVIIFKCLSK--------GAVDFLVKPIRKNELK 189
+ + +I K +K+ +I+ S A +++VK +ELK
Sbjct: 61 LEVAGEI--RKKKKDAKIILLTAYSHYRSDXSSWAADEYVVKSFNFDELK 108
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S K+L+VE+D + + + L G+ V E T+G + + + + ++ ++ +
Sbjct: 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQN 64
Query: 147 GVALLSKIMSHKTRKNLPVII---------FKCLSKGAVDFLVKPIRKNEL 188
G + K+ KN+P++I F+ L A +++ KP+ ++L
Sbjct: 65 GYLICGKLKKDDDLKNVPIVIIGNPDGFAQFRKLKAHADEYVAKPVDADQL 115
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V++++S ++A+L GY A +A K +++L + +VL MP GV
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPV-IVLDVWMPDGDGV 61
Query: 149 ALLSKIMSHKTRKNLPVII--------FKCLSKGAVDFLVKP 182
+ I + + VI K + KGA +FL KP
Sbjct: 62 NFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKP 103
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VLLVE+ S + +++ Y++ G A + +E + ++L +P +SG
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQL-IILDLKLPDMSGE 64
Query: 149 ALLSKIMSHKTRKNLPV--------IIFKCLSKGAVDFLVKPIRKNELK 189
+L I + ++ + + + KGA DFL KPI + LK
Sbjct: 65 DVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLK 113
>pdb|3I09|A Chain A, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
pdb|3I09|B Chain B, Crystal Structure Of A Periplasmic Binding Protein
(Bma2936) From Burkholderia Mallei At 1.80 A Resolution
Length = 375
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 345 PIKLVGTKKTNRLDLGSSKLSEQIDRGQLDL 375
PI++V N+ D+ +SK E DRG LDL
Sbjct: 44 PIEVVYADHQNKADIAASKAREWXDRGGLDL 74
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLS 146
S K+L+VE+D + + + L G+ V E T+G + + + + ++ ++ +
Sbjct: 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQN 64
Query: 147 GVALLSKIMSHKTRKNLPVIIF---------KCLSKGAVDFLVKPIRKNEL 188
G + K+ KN+P++I + L A +++ KP+ ++L
Sbjct: 65 GYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQL 115
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147
K+L+++ D +R + L + Y V E+ N +A + ++ +H DLV+ + + +
Sbjct: 5 KILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQID--HHHPDLVILDXDIIGENS 61
Query: 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVKPIRKNEL 188
L K+ K KN+P+I I L GA D+L KP +N+L
Sbjct: 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149
V +V+ T V L G+ V A N +A+ L IDLV +V +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDVFEGEESLN 64
Query: 150 LLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKPIRKNEL 188
L+ +I + V+ I + GAVD+++KP R + L
Sbjct: 65 LIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 114 VTEATNGLQAWKILEDLTNHI-DLVLTEV-MPCLSGVALLSKIMSHK--TRKNL------ 163
V EA +G A LE + H+ D+ L + MP + G + + + S++ TR L
Sbjct: 44 VGEADDGAAA---LELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDE 100
Query: 164 PVIIFKCLSKGAVDFLVKPIRKNEL 188
P I+++ L +GA FL+K + E+
Sbjct: 101 PAIVYQALQQGAAGFLLKDSTRTEI 125
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGV 148
+VL+V++++S ++A+L GY A +A K +++L + +VL P GV
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPV-IVLDVWXPDGDGV 60
Query: 149 ALLSKIMSHKTRKNLPVII--------FKCLSKGAVDFLVKPI 183
+ I + + VI K + KGA +FL KP
Sbjct: 61 NFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPF 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,891,342
Number of Sequences: 62578
Number of extensions: 674034
Number of successful extensions: 1087
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 66
length of query: 770
length of database: 14,973,337
effective HSP length: 106
effective length of query: 664
effective length of database: 8,340,069
effective search space: 5537805816
effective search space used: 5537805816
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)