Query 004184
Match_columns 770
No_of_seqs 724 out of 2513
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 19:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 1E-18 2.2E-23 181.5 12.7 110 88-201 1-121 (229)
2 PRK11091 aerobic respiration c 99.7 2.9E-17 6.3E-22 196.3 18.6 186 3-198 437-645 (779)
3 TIGR02956 TMAO_torS TMAO reduc 99.7 4.2E-17 9.2E-22 198.4 17.8 185 3-198 618-823 (968)
4 PF06203 CCT: CCT motif; Inte 99.7 1.6E-18 3.5E-23 135.0 2.4 45 715-759 1-45 (45)
5 PRK11466 hybrid sensory histid 99.7 6.4E-17 1.4E-21 196.0 17.5 184 3-198 599-800 (914)
6 PRK15347 two component system 99.7 7.7E-17 1.7E-21 194.9 18.2 110 87-198 690-812 (921)
7 PRK10841 hybrid sensory kinase 99.7 6.9E-16 1.5E-20 188.6 19.3 111 86-200 800-921 (924)
8 PRK11107 hybrid sensory histid 99.7 4.7E-16 1E-20 187.9 17.6 110 87-198 667-787 (919)
9 PRK09959 hybrid sensory histid 99.7 4.8E-16 1E-20 193.8 17.5 166 23-198 900-1076(1197)
10 COG4753 Response regulator con 99.7 2.4E-16 5.1E-21 177.1 11.8 112 87-202 1-126 (475)
11 COG4565 CitB Response regulato 99.6 8.4E-16 1.8E-20 155.8 12.4 114 88-203 1-125 (224)
12 COG2204 AtoC Response regulato 99.6 7.5E-16 1.6E-20 173.2 13.4 110 87-200 4-124 (464)
13 PF00072 Response_reg: Respons 99.6 2.9E-15 6.2E-20 134.7 12.0 100 90-193 1-112 (112)
14 PRK13837 two-component VirA-li 99.6 1.7E-14 3.8E-19 174.4 19.4 186 3-199 614-815 (828)
15 COG4566 TtrR Response regulato 99.6 4.7E-15 1E-19 147.9 10.6 112 88-203 5-127 (202)
16 COG3437 Response regulator con 99.5 1.4E-14 2.9E-19 156.6 10.4 112 86-199 13-136 (360)
17 COG0784 CheY FOG: CheY-like re 99.5 7.7E-14 1.7E-18 128.4 13.7 109 86-198 4-126 (130)
18 COG2197 CitB Response regulato 99.5 9.8E-14 2.1E-18 142.5 12.9 108 88-199 1-121 (211)
19 PLN03029 type-a response regul 99.5 1.3E-13 2.9E-18 142.2 13.9 114 86-199 7-149 (222)
20 PRK13557 histidine kinase; Pro 99.5 3.3E-13 7.2E-18 152.3 17.5 185 2-197 330-534 (540)
21 COG3706 PleD Response regulato 99.5 9.2E-14 2E-18 155.5 12.6 114 86-201 131-255 (435)
22 PRK10046 dpiA two-component re 99.5 4E-13 8.7E-18 137.7 13.8 111 87-201 4-127 (225)
23 KOG0519 Sensory transduction h 99.5 9.6E-14 2.1E-18 166.9 10.6 112 84-197 663-785 (786)
24 PRK10816 DNA-binding transcrip 99.5 4.2E-13 9.2E-18 134.7 13.4 107 88-198 1-118 (223)
25 PRK11173 two-component respons 99.5 4.8E-13 1E-17 136.3 13.6 108 87-199 3-121 (237)
26 PRK09836 DNA-binding transcrip 99.5 6.2E-13 1.4E-17 133.9 13.5 107 88-198 1-118 (227)
27 PRK10529 DNA-binding transcrip 99.5 6.6E-13 1.4E-17 133.3 13.5 107 88-199 2-119 (225)
28 PRK10643 DNA-binding transcrip 99.4 9.6E-13 2.1E-17 130.8 14.1 109 88-200 1-120 (222)
29 PRK10161 transcriptional regul 99.4 8.3E-13 1.8E-17 133.1 13.8 109 88-198 3-122 (229)
30 TIGR02154 PhoB phosphate regul 99.4 9.8E-13 2.1E-17 130.8 13.5 110 88-199 3-123 (226)
31 PRK10766 DNA-binding transcrip 99.4 1.4E-12 3E-17 130.6 13.8 108 88-200 3-121 (221)
32 COG3947 Response regulator con 99.4 2.6E-13 5.6E-18 142.8 8.6 108 88-199 1-117 (361)
33 PRK09468 ompR osmolarity respo 99.4 1.5E-12 3.3E-17 132.3 13.4 109 87-199 5-124 (239)
34 PRK11083 DNA-binding response 99.4 1.5E-12 3.3E-17 129.9 13.2 109 87-199 3-122 (228)
35 PRK10336 DNA-binding transcrip 99.4 1.6E-12 3.4E-17 129.2 13.2 108 88-199 1-119 (219)
36 PRK10701 DNA-binding transcrip 99.4 1.7E-12 3.8E-17 132.2 13.5 107 88-199 2-119 (240)
37 PRK13856 two-component respons 99.4 1.9E-12 4.1E-17 132.6 13.6 106 89-199 3-120 (241)
38 TIGR03787 marine_sort_RR prote 99.4 3.3E-12 7.1E-17 128.4 13.7 107 89-199 2-121 (227)
39 PRK10430 DNA-binding transcrip 99.4 2.9E-12 6.3E-17 132.4 13.6 111 88-200 2-125 (239)
40 PRK10955 DNA-binding transcrip 99.4 3E-12 6.5E-17 128.6 13.1 106 88-199 2-118 (232)
41 PRK11517 transcriptional regul 99.4 4E-12 8.7E-17 126.9 13.2 106 88-198 1-117 (223)
42 CHL00148 orf27 Ycf27; Reviewed 99.4 6.1E-12 1.3E-16 127.0 14.2 109 86-199 5-124 (240)
43 PRK10840 transcriptional regul 99.4 5.2E-12 1.1E-16 128.0 12.9 109 86-198 2-126 (216)
44 PRK14084 two-component respons 99.4 7.6E-12 1.7E-16 128.8 13.7 108 88-199 1-119 (246)
45 TIGR02875 spore_0_A sporulatio 99.4 6.2E-12 1.3E-16 131.2 13.0 110 87-198 2-124 (262)
46 TIGR01387 cztR_silR_copR heavy 99.3 9.5E-12 2.1E-16 123.3 12.9 106 90-199 1-117 (218)
47 COG4567 Response regulator con 99.3 6E-12 1.3E-16 121.7 10.6 135 89-225 11-154 (182)
48 PRK09958 DNA-binding transcrip 99.3 8.9E-12 1.9E-16 123.0 12.2 107 88-198 1-119 (204)
49 PRK09483 response regulator; P 99.3 1.1E-11 2.4E-16 123.5 12.5 108 87-198 1-121 (217)
50 PRK09581 pleD response regulat 99.3 5.1E-12 1.1E-16 139.7 10.5 110 86-198 154-274 (457)
51 PRK13435 response regulator; P 99.3 2.7E-11 5.8E-16 114.6 13.6 114 85-203 3-126 (145)
52 PRK10923 glnG nitrogen regulat 99.3 1.5E-11 3.3E-16 139.4 14.1 109 87-199 3-122 (469)
53 PRK15115 response regulator Gl 99.3 1.2E-11 2.7E-16 139.0 13.1 109 86-198 4-123 (444)
54 PRK11697 putative two-componen 99.3 1.8E-11 3.8E-16 125.0 13.0 107 87-198 1-118 (238)
55 PRK09935 transcriptional regul 99.3 2.9E-11 6.3E-16 119.2 12.9 110 86-199 2-124 (210)
56 PRK10610 chemotaxis regulatory 99.3 6.9E-11 1.5E-15 104.3 13.9 112 86-199 4-127 (129)
57 PRK10365 transcriptional regul 99.3 1.8E-11 3.9E-16 137.2 12.5 110 86-199 4-124 (441)
58 PRK15479 transcriptional regul 99.3 5.9E-11 1.3E-15 117.9 13.5 108 88-199 1-119 (221)
59 PRK10710 DNA-binding transcrip 99.3 7E-11 1.5E-15 119.3 13.9 108 88-200 11-129 (240)
60 PRK10360 DNA-binding transcrip 99.3 4.1E-11 8.9E-16 117.5 11.8 104 88-198 2-118 (196)
61 PRK12555 chemotaxis-specific m 99.2 4E-11 8.6E-16 130.8 12.4 105 88-197 1-129 (337)
62 PRK11361 acetoacetate metaboli 99.2 4.8E-11 1E-15 134.5 12.6 107 88-198 5-122 (457)
63 PRK09581 pleD response regulat 99.2 9.8E-11 2.1E-15 129.5 14.1 110 88-199 3-123 (457)
64 TIGR01818 ntrC nitrogen regula 99.2 6.3E-11 1.4E-15 133.9 12.7 105 90-198 1-116 (463)
65 PRK00742 chemotaxis-specific m 99.2 8.1E-11 1.8E-15 129.1 13.2 94 86-184 2-110 (354)
66 PRK09390 fixJ response regulat 99.2 7.8E-11 1.7E-15 114.1 11.6 109 87-199 3-122 (202)
67 TIGR02915 PEP_resp_reg putativ 99.2 5.7E-11 1.2E-15 133.7 12.2 103 90-198 1-119 (445)
68 COG2201 CheB Chemotaxis respon 99.2 1.2E-10 2.6E-15 127.3 10.9 93 87-184 1-108 (350)
69 PRK15369 two component system 99.1 5.5E-10 1.2E-14 108.7 12.5 109 86-198 2-123 (211)
70 PRK10403 transcriptional regul 99.1 5.5E-10 1.2E-14 109.8 12.2 108 87-198 6-126 (215)
71 PRK13558 bacterio-opsin activa 99.1 3E-10 6.5E-15 134.0 11.3 108 87-198 7-127 (665)
72 PRK10651 transcriptional regul 99.1 9.5E-10 2.1E-14 108.4 12.8 109 86-198 5-126 (216)
73 PRK10100 DNA-binding transcrip 99.1 4.5E-10 9.8E-15 116.0 10.3 107 85-198 8-127 (216)
74 PRK09191 two-component respons 99.1 1.3E-09 2.7E-14 113.0 12.8 108 87-199 137-255 (261)
75 PRK11475 DNA-binding transcrip 99.0 2.5E-09 5.5E-14 109.9 9.8 97 99-199 2-116 (207)
76 PRK15411 rcsA colanic acid cap 98.9 4.7E-09 1E-13 107.6 11.3 107 88-198 1-123 (207)
77 cd00156 REC Signal receiver do 98.9 7.1E-09 1.5E-13 86.9 10.1 101 91-195 1-112 (113)
78 COG3707 AmiR Response regulato 98.9 1.2E-09 2.5E-14 110.1 6.0 114 85-203 3-128 (194)
79 PRK15029 arginine decarboxylas 98.7 4.9E-08 1.1E-12 116.9 11.1 111 88-201 1-136 (755)
80 PRK10693 response regulator of 98.7 5.1E-08 1.1E-12 105.4 8.9 80 116-199 2-93 (303)
81 COG3279 LytT Response regulato 98.7 7.1E-08 1.5E-12 101.6 9.3 108 87-198 1-119 (244)
82 PRK10618 phosphotransfer inter 98.6 6.1E-08 1.3E-12 118.7 9.2 100 24-142 637-737 (894)
83 PRK11107 hybrid sensory histid 98.0 3.2E-05 6.9E-10 94.3 12.6 157 24-196 483-650 (919)
84 smart00448 REC cheY-homologous 97.5 0.00067 1.4E-08 49.2 7.8 54 88-143 1-55 (55)
85 COG3706 PleD Response regulato 97.3 0.0002 4.2E-09 81.4 3.8 83 112-198 13-104 (435)
86 PF06490 FleQ: Flagellar regul 97.1 0.0017 3.8E-08 60.5 8.3 100 89-195 1-107 (109)
87 PRK02261 methylaspartate mutas 96.0 0.071 1.5E-06 51.8 11.0 109 86-197 2-135 (137)
88 PF09425 CCT_2: Divergent CCT 95.5 0.0075 1.6E-07 42.7 1.4 25 713-738 2-26 (27)
89 TIGR00640 acid_CoA_mut_C methy 95.3 0.29 6.2E-06 47.4 12.3 101 94-197 13-128 (132)
90 cd02071 MM_CoA_mut_B12_BD meth 95.2 0.13 2.9E-06 48.6 9.5 101 90-193 2-121 (122)
91 KOG1601 GATA-4/5/6 transcripti 95.1 0.0087 1.9E-07 61.9 1.4 42 711-752 289-330 (340)
92 cd02067 B12-binding B12 bindin 94.2 0.19 4.1E-06 46.9 7.8 85 94-181 10-109 (119)
93 PF03709 OKR_DC_1_N: Orn/Lys/A 93.9 0.45 9.8E-06 44.7 9.6 96 100-198 6-114 (115)
94 TIGR01501 MthylAspMutase methy 91.1 2.5 5.3E-05 41.3 10.9 101 94-197 12-133 (134)
95 cd02070 corrinoid_protein_B12- 90.7 1 2.2E-05 46.3 8.4 91 88-180 83-190 (201)
96 COG2185 Sbm Methylmalonyl-CoA 90.6 3.5 7.7E-05 40.7 11.5 110 86-198 11-139 (143)
97 PRK15399 lysine decarboxylase 90.2 1.9 4.2E-05 52.5 11.3 109 88-202 1-127 (713)
98 PRK15400 lysine decarboxylase 89.3 2.2 4.8E-05 52.0 10.9 109 88-202 1-127 (714)
99 COG4999 Uncharacterized domain 89.1 0.76 1.7E-05 43.9 5.3 102 85-193 9-122 (140)
100 cd02072 Glm_B12_BD B12 binding 88.3 3.9 8.6E-05 39.6 9.8 97 94-193 10-127 (128)
101 COG0512 PabA Anthranilate/para 87.8 1.1 2.3E-05 46.3 5.9 72 88-166 2-78 (191)
102 TIGR02370 pyl_corrinoid methyl 86.5 2.2 4.7E-05 43.9 7.4 90 89-180 86-192 (197)
103 PF02310 B12-binding: B12 bind 85.9 3.7 8E-05 37.8 8.0 68 95-166 12-85 (121)
104 PRK09426 methylmalonyl-CoA mut 82.2 8.7 0.00019 47.1 11.0 108 87-197 582-708 (714)
105 TIGR03815 CpaE_hom_Actino heli 82.1 2.3 5E-05 46.5 5.7 76 111-196 1-86 (322)
106 PRK03958 tRNA 2'-O-methylase; 81.7 17 0.00038 37.1 11.2 58 87-144 31-91 (176)
107 cd02069 methionine_synthase_B1 81.1 6.2 0.00013 41.2 8.2 91 88-182 89-202 (213)
108 PF03602 Cons_hypoth95: Conser 78.8 5.2 0.00011 40.8 6.5 70 88-157 66-140 (183)
109 PF10087 DUF2325: Uncharacteri 78.6 18 0.00038 32.8 9.3 76 89-167 1-80 (97)
110 COG4251 Bacteriophytochrome (l 74.8 4.1 8.8E-05 48.7 5.0 53 7-63 682-741 (750)
111 PRK06774 para-aminobenzoate sy 73.1 4.6 0.0001 40.9 4.5 72 90-166 2-76 (191)
112 PF07688 KaiA: KaiA domain; I 72.3 16 0.00035 39.4 8.3 107 89-199 2-120 (283)
113 cd02065 B12-binding_like B12 b 71.9 13 0.00028 34.2 6.9 70 94-167 10-85 (125)
114 PRK07649 para-aminobenzoate/an 70.4 5.9 0.00013 40.7 4.5 50 90-141 2-51 (195)
115 PRK00043 thiE thiamine-phospha 70.3 33 0.00071 34.8 9.9 82 110-196 103-208 (212)
116 cd04728 ThiG Thiazole synthase 69.3 35 0.00076 36.7 10.0 106 86-198 92-226 (248)
117 PF01408 GFO_IDH_MocA: Oxidore 68.8 45 0.00097 30.4 9.6 82 90-198 29-112 (120)
118 cd02068 radical_SAM_B12_BD B12 68.8 24 0.00053 33.1 8.1 95 98-195 3-110 (127)
119 PRK08007 para-aminobenzoate sy 68.7 7.1 0.00015 39.7 4.7 72 90-166 2-76 (187)
120 PRK09303 adaptive-response sen 68.7 4.1 8.9E-05 45.5 3.2 55 3-62 312-376 (380)
121 COG5002 VicK Signal transducti 66.5 6.6 0.00014 44.2 4.1 58 2-63 380-448 (459)
122 PF01596 Methyltransf_3: O-met 66.4 20 0.00044 37.2 7.5 92 26-141 33-129 (205)
123 TIGR00566 trpG_papA glutamine 66.3 13 0.00028 37.8 6.0 72 90-166 2-76 (188)
124 PRK01911 ppnK inorganic polyph 66.3 29 0.00063 38.1 9.0 103 88-199 1-121 (292)
125 PRK00208 thiG thiazole synthas 66.2 40 0.00088 36.3 9.7 106 86-198 92-226 (250)
126 PRK05637 anthranilate synthase 66.1 16 0.00034 38.1 6.6 50 88-140 2-51 (208)
127 TIGR00095 RNA methyltransferas 65.9 35 0.00075 34.8 9.0 69 89-157 74-146 (189)
128 PRK03708 ppnK inorganic polyph 65.7 22 0.00048 38.7 8.0 99 88-198 1-112 (277)
129 PLN02335 anthranilate synthase 64.4 12 0.00027 39.1 5.6 76 86-166 17-95 (222)
130 PF09936 Methyltrn_RNA_4: SAM- 63.4 35 0.00076 35.1 8.3 95 88-185 43-162 (185)
131 PLN02871 UDP-sulfoquinovose:DA 61.5 59 0.0013 37.3 10.9 101 87-197 290-399 (465)
132 PF00534 Glycos_transf_1: Glyc 61.1 67 0.0014 30.7 9.7 104 86-199 46-159 (172)
133 PRK15484 lipopolysaccharide 1, 60.9 82 0.0018 35.2 11.6 87 102-197 247-343 (380)
134 TIGR03088 stp2 sugar transfera 58.8 62 0.0013 35.3 10.1 100 88-197 230-337 (374)
135 KOG1562 Spermidine synthase [A 58.7 25 0.00055 38.9 6.7 62 89-152 147-215 (337)
136 PRK04148 hypothetical protein; 58.6 16 0.00035 35.8 4.8 96 87-187 17-114 (134)
137 PF14097 SpoVAE: Stage V sporu 58.2 62 0.0013 33.1 8.8 74 90-166 3-86 (180)
138 PRK10604 sensor protein RstB; 58.2 10 0.00022 43.0 4.0 35 26-66 390-424 (433)
139 COG0742 N6-adenine-specific me 57.0 34 0.00074 35.4 7.0 56 87-143 66-125 (187)
140 TIGR02026 BchE magnesium-proto 56.8 73 0.0016 37.4 10.7 96 96-195 21-135 (497)
141 PRK10558 alpha-dehydro-beta-de 56.5 64 0.0014 34.7 9.4 91 101-193 8-111 (256)
142 TIGR02311 HpaI 2,4-dihydroxyhe 56.2 67 0.0015 34.3 9.5 91 103-195 3-106 (249)
143 PRK00811 spermidine synthase; 55.9 46 0.00099 36.1 8.3 54 88-144 101-162 (283)
144 PRK03372 ppnK inorganic polyph 55.9 63 0.0014 35.8 9.4 102 89-199 7-129 (306)
145 PRK05670 anthranilate synthase 55.8 22 0.00047 36.0 5.5 48 90-139 2-49 (189)
146 PRK13566 anthranilate synthase 55.8 25 0.00055 43.3 6.9 76 84-166 523-602 (720)
147 cd03819 GT1_WavL_like This fam 55.6 1.1E+02 0.0025 32.4 11.3 102 87-197 216-329 (355)
148 PRK10128 2-keto-3-deoxy-L-rham 55.5 68 0.0015 34.9 9.4 89 102-192 8-109 (267)
149 COG2205 KdpD Osmosensitive K+ 55.5 12 0.00027 46.1 4.1 58 3-64 814-880 (890)
150 PRK15128 23S rRNA m(5)C1962 me 54.7 1.4E+02 0.003 34.3 12.2 107 88-198 244-359 (396)
151 PRK06895 putative anthranilate 54.5 18 0.00038 36.7 4.6 72 88-166 2-76 (190)
152 PRK02155 ppnK NAD(+)/NADH kina 53.1 77 0.0017 34.8 9.5 101 89-198 7-119 (291)
153 PRK07765 para-aminobenzoate sy 53.0 30 0.00064 36.1 6.0 75 88-166 1-80 (214)
154 PRK04885 ppnK inorganic polyph 52.9 40 0.00088 36.5 7.2 76 100-198 17-93 (265)
155 cd03823 GT1_ExpE7_like This fa 52.4 1.5E+02 0.0032 31.0 11.3 59 134-197 263-328 (359)
156 cd04962 GT1_like_5 This family 52.2 1.1E+02 0.0023 32.9 10.5 100 88-197 228-335 (371)
157 PRK03378 ppnK inorganic polyph 51.8 62 0.0014 35.5 8.5 102 88-198 6-119 (292)
158 cd03813 GT1_like_3 This family 51.4 92 0.002 36.0 10.3 101 87-197 324-441 (475)
159 PRK11006 phoR phosphate regulo 51.2 12 0.00027 42.0 3.2 36 23-64 387-422 (430)
160 COG4122 Predicted O-methyltran 51.1 41 0.00089 35.6 6.7 65 88-154 85-155 (219)
161 cd01424 MGS_CPS_II Methylglyox 51.0 1.1E+02 0.0023 28.1 8.8 67 94-166 9-99 (110)
162 TIGR03449 mycothiol_MshA UDP-N 50.6 1.3E+02 0.0027 33.3 10.9 101 88-197 253-367 (405)
163 PF14606 Lipase_GDSL_3: GDSL-l 50.3 25 0.00054 36.0 4.8 87 109-200 31-132 (178)
164 PRK01231 ppnK inorganic polyph 50.3 74 0.0016 35.0 8.8 101 89-198 6-118 (295)
165 PRK13560 hypothetical protein; 50.3 11 0.00024 45.4 2.7 34 24-63 770-803 (807)
166 PRK08857 para-aminobenzoate sy 50.2 24 0.00052 35.9 4.7 71 90-166 2-76 (193)
167 cd03820 GT1_amsD_like This fam 49.8 1.5E+02 0.0033 30.4 10.8 100 87-197 209-318 (348)
168 PF02254 TrkA_N: TrkA-N domain 49.5 46 0.00099 30.3 6.1 85 88-180 22-115 (116)
169 TIGR03239 GarL 2-dehydro-3-deo 49.2 89 0.0019 33.5 9.0 89 103-193 3-104 (249)
170 PRK08385 nicotinate-nucleotide 48.9 67 0.0015 35.2 8.1 63 90-156 157-225 (278)
171 COG3836 HpcH 2,4-dihydroxyhept 48.3 55 0.0012 35.2 7.0 93 102-196 7-111 (255)
172 CHL00101 trpG anthranilate syn 48.0 26 0.00056 35.6 4.6 49 90-140 2-50 (190)
173 cd05212 NAD_bind_m-THF_DH_Cycl 47.8 55 0.0012 32.1 6.6 54 84-144 25-83 (140)
174 PLN02823 spermine synthase 47.1 66 0.0014 36.1 8.0 53 88-143 128-187 (336)
175 PRK15427 colanic acid biosynth 46.4 1.7E+02 0.0037 33.1 11.3 101 87-197 253-369 (406)
176 PRK13143 hisH imidazole glycer 45.7 51 0.0011 33.7 6.4 44 88-139 1-44 (200)
177 PRK11086 sensory histidine kin 45.6 19 0.00041 41.3 3.5 56 3-65 474-535 (542)
178 PLN02366 spermidine synthase 45.6 80 0.0017 35.0 8.2 68 88-157 116-195 (308)
179 PF00497 SBP_bac_3: Bacterial 45.6 1.1E+02 0.0025 29.8 8.7 105 84-201 107-211 (225)
180 PRK02649 ppnK inorganic polyph 45.1 78 0.0017 35.0 8.0 91 99-198 18-124 (305)
181 PRK11360 sensory histidine kin 44.9 17 0.00036 41.7 3.0 57 3-65 540-601 (607)
182 PRK04539 ppnK inorganic polyph 44.5 1.2E+02 0.0025 33.5 9.2 102 88-198 6-124 (296)
183 TIGR00417 speE spermidine synt 43.6 90 0.002 33.5 8.1 54 88-144 97-157 (270)
184 PF04321 RmlD_sub_bind: RmlD s 43.4 39 0.00084 36.4 5.3 52 88-141 1-59 (286)
185 PRK14076 pnk inorganic polypho 43.4 79 0.0017 37.9 8.3 105 85-198 288-404 (569)
186 PLN02935 Bifunctional NADH kin 43.1 1.8E+02 0.0039 34.6 10.8 103 87-198 194-318 (508)
187 COG0313 Predicted methyltransf 43.0 71 0.0015 35.0 7.1 73 86-166 29-110 (275)
188 PRK05282 (alpha)-aspartyl dipe 42.8 1.6E+02 0.0034 31.5 9.6 65 87-158 31-101 (233)
189 cd03818 GT1_ExpC_like This fam 42.7 1.7E+02 0.0036 32.5 10.4 70 120-198 291-366 (396)
190 PF01564 Spermine_synth: Sperm 42.5 51 0.0011 35.1 6.0 67 88-156 101-179 (246)
191 PRK05749 3-deoxy-D-manno-octul 42.3 1E+02 0.0023 34.6 8.8 103 86-197 261-387 (425)
192 PF05690 ThiG: Thiazole biosyn 42.3 1.4E+02 0.0031 32.1 9.0 105 86-197 92-225 (247)
193 cd04949 GT1_gtfA_like This fam 41.5 1.3E+02 0.0029 32.6 9.2 49 145-198 290-345 (372)
194 cd03801 GT1_YqgM_like This fam 41.2 2.4E+02 0.0052 28.9 10.7 101 88-198 231-341 (374)
195 PRK10364 sensor protein ZraS; 41.1 29 0.00063 39.4 4.1 57 3-66 387-449 (457)
196 PF08047 His_leader: Histidine 41.1 11 0.00024 23.5 0.4 8 596-603 6-13 (16)
197 PRK09922 UDP-D-galactose:(gluc 40.9 1.5E+02 0.0033 32.4 9.6 48 147-199 271-325 (359)
198 TIGR02095 glgA glycogen/starch 40.8 2.4E+02 0.0053 32.3 11.6 61 134-199 366-438 (473)
199 PRK01372 ddl D-alanine--D-alan 40.5 56 0.0012 35.1 6.0 41 99-141 24-64 (304)
200 COG0626 MetC Cystathionine bet 40.2 98 0.0021 35.6 8.1 58 87-146 102-164 (396)
201 cd03313 enolase Enolase: Enola 40.2 1.2E+02 0.0025 34.9 8.8 98 94-193 210-347 (408)
202 PRK10490 sensor protein KdpD; 40.1 28 0.0006 43.9 4.1 36 25-66 848-883 (895)
203 PRK15053 dpiB sensor histidine 40.0 24 0.00052 40.8 3.3 36 24-65 504-539 (545)
204 TIGR02082 metH 5-methyltetrahy 39.7 80 0.0017 41.2 8.0 76 88-167 733-818 (1178)
205 PRK13170 hisH imidazole glycer 39.5 75 0.0016 32.5 6.4 44 88-139 1-44 (196)
206 PRK00654 glgA glycogen synthas 39.3 3E+02 0.0065 31.7 12.0 104 87-199 311-429 (466)
207 PLN02781 Probable caffeoyl-CoA 39.2 1.1E+02 0.0024 32.3 7.8 54 88-141 94-152 (234)
208 PRK05458 guanosine 5'-monophos 39.0 2.4E+02 0.0053 31.6 10.7 87 89-181 113-230 (326)
209 cd05844 GT1_like_7 Glycosyltra 38.8 3E+02 0.0064 29.5 11.3 101 87-197 219-335 (367)
210 PRK04457 spermidine synthase; 38.1 1.2E+02 0.0027 32.5 8.1 68 87-157 90-166 (262)
211 PRK02645 ppnK inorganic polyph 38.1 1.1E+02 0.0025 33.7 7.9 103 87-197 3-114 (305)
212 PF00478 IMPDH: IMP dehydrogen 37.9 85 0.0018 35.6 7.0 59 119-181 108-177 (352)
213 TIGR00693 thiE thiamine-phosph 37.8 1E+02 0.0022 31.0 7.0 60 115-179 101-178 (196)
214 cd03825 GT1_wcfI_like This fam 37.8 73 0.0016 33.9 6.3 65 88-154 1-73 (365)
215 PLN02589 caffeoyl-CoA O-methyl 37.8 1.1E+02 0.0023 32.9 7.5 54 88-141 105-164 (247)
216 PRK09490 metH B12-dependent me 37.3 1.1E+02 0.0024 40.2 8.7 76 88-167 752-837 (1229)
217 PRK10909 rsmD 16S rRNA m(2)G96 36.9 1.7E+02 0.0036 30.3 8.5 67 88-157 77-146 (199)
218 PRK09522 bifunctional glutamin 36.8 51 0.0011 39.2 5.3 52 88-141 2-56 (531)
219 PRK15490 Vi polysaccharide bio 36.6 2.8E+02 0.006 33.6 11.2 96 87-192 429-532 (578)
220 TIGR03151 enACPred_II putative 36.3 1.4E+02 0.003 33.0 8.3 73 103-181 101-190 (307)
221 TIGR02149 glgA_Coryne glycogen 36.2 3E+02 0.0066 29.9 11.0 90 99-197 244-351 (388)
222 PF02518 HATPase_c: Histidine 35.9 29 0.00062 31.2 2.5 33 26-62 77-109 (111)
223 cd06355 PBP1_FmdD_like Peripla 35.7 1.7E+02 0.0036 32.1 8.9 76 88-166 134-221 (348)
224 PRK10742 putative methyltransf 35.5 2.6E+02 0.0056 30.4 9.8 56 87-145 110-177 (250)
225 PRK10815 sensor protein PhoQ; 35.4 38 0.00082 39.4 4.0 57 3-66 415-479 (485)
226 PRK05567 inosine 5'-monophosph 35.3 2.3E+02 0.0051 33.2 10.4 92 86-180 239-359 (486)
227 cd00886 MogA_MoaB MogA_MoaB fa 35.3 83 0.0018 30.8 5.8 43 99-141 21-69 (152)
228 cd01948 EAL EAL domain. This d 35.0 60 0.0013 32.9 4.9 81 103-185 137-238 (240)
229 cd03804 GT1_wbaZ_like This fam 34.9 2E+02 0.0044 30.9 9.3 99 88-198 222-326 (351)
230 cd06533 Glyco_transf_WecG_TagA 34.8 1.2E+02 0.0025 30.5 6.8 68 86-157 45-122 (171)
231 PRK12724 flagellar biosynthesi 34.8 1.3E+02 0.0028 35.1 7.9 54 86-141 251-307 (432)
232 PLN02476 O-methyltransferase 34.7 1.2E+02 0.0026 33.3 7.3 53 89-141 145-202 (278)
233 COG0421 SpeE Spermidine syntha 34.5 1.1E+02 0.0024 33.5 7.1 68 87-157 100-179 (282)
234 COG0293 FtsJ 23S rRNA methylas 34.0 23 0.00049 37.2 1.6 70 132-202 110-182 (205)
235 PLN02274 inosine-5'-monophosph 34.0 1.3E+02 0.0028 35.7 8.0 56 121-180 250-316 (505)
236 PF06073 DUF934: Bacterial pro 34.0 1.4E+02 0.0031 28.4 6.7 68 132-199 18-96 (110)
237 COG2200 Rtn c-di-GMP phosphodi 33.7 1.1E+02 0.0025 32.5 6.9 105 87-193 121-250 (256)
238 cd03802 GT1_AviGT4_like This f 33.7 3.5E+02 0.0077 28.3 10.7 65 121-196 235-306 (335)
239 cd00564 TMP_TenI Thiamine mono 33.6 1.4E+02 0.0031 29.2 7.3 64 111-180 95-177 (196)
240 TIGR02855 spore_yabG sporulati 33.5 1.5E+02 0.0033 32.5 7.7 51 87-139 104-159 (283)
241 PF03808 Glyco_tran_WecB: Glyc 33.2 1.5E+02 0.0031 29.8 7.2 68 86-157 47-124 (172)
242 PRK11359 cyclic-di-GMP phospho 33.2 1.2E+02 0.0027 36.7 8.0 92 102-195 682-794 (799)
243 PTZ00314 inosine-5'-monophosph 33.2 2.7E+02 0.0058 33.0 10.4 21 161-181 343-373 (495)
244 KOG1663 O-methyltransferase [S 32.8 2.7E+02 0.0058 30.0 9.2 97 21-141 56-157 (237)
245 KOG0921 Dosage compensation co 32.6 80 0.0017 39.8 6.0 18 646-663 1193-1210(1282)
246 cd03799 GT1_amsK_like This is 32.4 4.3E+02 0.0094 27.8 11.2 102 87-198 210-327 (355)
247 PRK14098 glycogen synthase; Pr 32.3 5E+02 0.011 30.4 12.5 104 87-199 336-452 (489)
248 PRK13146 hisH imidazole glycer 32.2 1.1E+02 0.0024 31.7 6.4 45 87-139 1-47 (209)
249 PRK05703 flhF flagellar biosyn 32.1 1.8E+02 0.0039 33.7 8.6 55 86-141 250-307 (424)
250 TIGR03061 pip_yhgE_Nterm YhgE/ 31.7 1.4E+02 0.0031 29.4 6.8 51 86-139 42-102 (164)
251 PRK10755 sensor protein BasS/P 31.2 39 0.00085 36.8 3.0 36 25-65 315-350 (356)
252 cd00758 MoCF_BD MoCF_BD: molyb 31.1 1.5E+02 0.0033 28.2 6.7 44 98-141 19-66 (133)
253 PRK02231 ppnK inorganic polyph 31.0 1.7E+02 0.0036 32.0 7.7 88 101-197 3-97 (272)
254 KOG3040 Predicted sugar phosph 31.0 1E+02 0.0022 32.8 5.6 95 86-198 38-137 (262)
255 TIGR03499 FlhF flagellar biosy 30.9 1.3E+02 0.0027 32.7 6.8 54 87-141 224-280 (282)
256 PRK12704 phosphodiesterase; Pr 30.9 41 0.0009 39.9 3.3 56 133-199 241-298 (520)
257 PRK09590 celB cellobiose phosp 30.9 2.3E+02 0.0049 26.5 7.5 95 89-194 3-102 (104)
258 PRK01130 N-acetylmannosamine-6 30.6 3.2E+02 0.0068 28.2 9.5 76 100-181 107-202 (221)
259 TIGR01815 TrpE-clade3 anthrani 30.5 91 0.002 38.6 6.2 75 85-166 514-592 (717)
260 cd04726 KGPDC_HPS 3-Keto-L-gul 30.4 3E+02 0.0065 27.6 9.1 86 89-180 79-185 (202)
261 TIGR00007 phosphoribosylformim 30.4 3E+02 0.0065 28.4 9.3 57 119-180 146-217 (230)
262 cd04951 GT1_WbdM_like This fam 30.3 3.3E+02 0.0072 28.8 9.9 99 87-197 219-325 (360)
263 PF00117 GATase: Glutamine ami 30.2 1.3E+02 0.0029 29.9 6.4 71 91-166 1-76 (192)
264 PRK11889 flhF flagellar biosyn 29.9 1.8E+02 0.004 33.8 8.0 56 86-141 268-328 (436)
265 PF05582 Peptidase_U57: YabG p 29.9 1.5E+02 0.0032 32.7 6.9 51 87-139 105-160 (287)
266 smart00052 EAL Putative diguan 29.8 1E+02 0.0022 31.2 5.6 82 102-185 137-239 (241)
267 PRK09470 cpxA two-component se 29.6 45 0.00099 37.3 3.3 36 24-65 422-457 (461)
268 PRK01581 speE spermidine synth 29.6 1.7E+02 0.0036 33.6 7.6 67 88-157 175-257 (374)
269 TIGR00064 ftsY signal recognit 29.5 2.5E+02 0.0054 30.4 8.7 54 86-141 99-162 (272)
270 PRK13111 trpA tryptophan synth 29.4 1.9E+02 0.0042 31.2 7.8 48 147-196 76-139 (258)
271 PRK14077 pnk inorganic polypho 29.3 2.1E+02 0.0047 31.4 8.2 102 88-198 11-120 (287)
272 cd00452 KDPG_aldolase KDPG and 29.3 1.5E+02 0.0033 30.0 6.7 70 105-180 91-170 (190)
273 CHL00162 thiG thiamin biosynth 29.2 3.3E+02 0.0072 29.8 9.3 104 87-198 107-240 (267)
274 PF02581 TMP-TENI: Thiamine mo 28.9 2.2E+02 0.0049 28.5 7.8 72 102-179 87-175 (180)
275 PF07279 DUF1442: Protein of u 28.8 1.4E+02 0.003 31.7 6.4 61 88-155 71-137 (218)
276 PRK07428 nicotinate-nucleotide 28.7 94 0.002 34.2 5.3 85 89-178 168-268 (288)
277 smart00852 MoCF_biosynth Proba 28.4 1.7E+02 0.0036 27.9 6.4 45 97-141 17-65 (135)
278 PRK06731 flhF flagellar biosyn 28.3 2.3E+02 0.005 30.8 8.2 55 87-141 103-162 (270)
279 PRK07239 bifunctional uroporph 28.1 3.3E+02 0.0073 30.5 9.8 104 84-194 8-137 (381)
280 PRK14974 cell division protein 28.1 2.2E+02 0.0049 31.9 8.3 54 86-141 167-230 (336)
281 PRK09467 envZ osmolarity senso 28.1 48 0.001 37.0 3.1 34 26-65 400-433 (435)
282 PLN02727 NAD kinase 28.1 3.3E+02 0.0071 34.9 10.2 104 87-199 678-800 (986)
283 PF13659 Methyltransf_26: Meth 28.1 1.2E+02 0.0025 27.4 5.1 52 88-141 24-78 (117)
284 PF03060 NMO: Nitronate monoox 27.8 3E+02 0.0065 30.5 9.2 72 103-180 128-218 (330)
285 PRK01185 ppnK inorganic polyph 27.8 2.4E+02 0.0053 30.7 8.3 98 88-198 1-105 (271)
286 PRK13125 trpA tryptophan synth 27.7 3.4E+02 0.0074 28.7 9.3 79 99-182 117-215 (244)
287 PF01053 Cys_Met_Meta_PP: Cys/ 27.6 2.5E+02 0.0054 32.1 8.7 60 88-149 95-158 (386)
288 cd06296 PBP1_CatR_like Ligand- 27.5 3.4E+02 0.0073 27.7 9.1 62 99-169 17-85 (270)
289 PRK10549 signal transduction h 27.5 67 0.0014 36.1 4.1 36 25-66 424-459 (466)
290 PRK09727 his operon leader pep 27.2 25 0.00053 24.3 0.3 8 596-603 6-13 (26)
291 COG4191 Signal transduction hi 27.0 64 0.0014 38.7 3.9 57 2-65 537-601 (603)
292 cd01743 GATase1_Anthranilate_S 27.0 69 0.0015 32.1 3.7 48 90-139 1-48 (184)
293 PLN02274 inosine-5'-monophosph 27.0 4E+02 0.0087 31.7 10.5 88 87-180 260-379 (505)
294 PF10672 Methyltrans_SAM: S-ad 27.0 2.1E+02 0.0045 31.6 7.6 53 88-141 147-203 (286)
295 TIGR03407 urea_ABC_UrtA urea A 27.0 2.9E+02 0.0063 30.4 9.0 76 88-166 135-222 (359)
296 PRK14607 bifunctional glutamin 26.9 79 0.0017 37.6 4.7 73 89-166 1-77 (534)
297 PRK10060 RNase II stability mo 26.8 2.3E+02 0.005 34.4 8.7 92 101-194 544-656 (663)
298 PRK00025 lpxB lipid-A-disaccha 26.8 3.1E+02 0.0068 30.0 9.2 23 175-197 318-340 (380)
299 PF06283 ThuA: Trehalose utili 26.8 1.1E+02 0.0024 31.4 5.3 51 89-143 1-63 (217)
300 PRK03612 spermidine synthase; 26.7 1.6E+02 0.0034 35.0 7.1 67 88-157 322-404 (521)
301 cd08179 NADPH_BDH NADPH-depend 26.6 1.8E+02 0.0038 32.8 7.3 63 88-154 24-100 (375)
302 PRK14569 D-alanyl-alanine synt 26.4 1.8E+02 0.004 31.5 7.1 47 99-147 23-72 (296)
303 COG0642 BaeS Signal transducti 26.3 77 0.0017 32.5 4.0 39 22-66 292-330 (336)
304 KOG1203 Predicted dehydrogenas 26.2 1.8E+02 0.0038 33.8 7.1 71 85-157 77-149 (411)
305 PRK10481 hypothetical protein; 26.2 2.8E+02 0.0061 29.5 8.2 76 87-167 129-211 (224)
306 PLN00191 enolase 26.2 2.6E+02 0.0055 32.9 8.6 97 93-193 239-379 (457)
307 COG5012 Predicted cobalamin bi 26.2 1.1E+02 0.0024 32.5 5.1 82 97-180 118-212 (227)
308 cd03795 GT1_like_4 This family 26.1 7.1E+02 0.015 26.2 11.5 102 87-198 218-332 (357)
309 cd03808 GT1_cap1E_like This fa 26.1 5.2E+02 0.011 26.6 10.2 46 147-197 277-328 (359)
310 PRK05458 guanosine 5'-monophos 26.1 1.1E+02 0.0023 34.3 5.3 56 121-179 100-166 (326)
311 cd03791 GT1_Glycogen_synthase_ 26.1 5.4E+02 0.012 29.3 11.2 61 134-199 371-443 (476)
312 cd03800 GT1_Sucrose_synthase T 25.9 4.9E+02 0.011 28.1 10.4 69 120-197 293-367 (398)
313 COG0118 HisH Glutamine amidotr 25.8 1.6E+02 0.0035 30.9 6.1 36 88-123 2-37 (204)
314 PRK11840 bifunctional sulfur c 25.7 4.4E+02 0.0095 29.7 9.8 106 86-198 166-300 (326)
315 cd01572 QPRTase Quinolinate ph 25.7 2.4E+02 0.0051 30.7 7.7 82 89-178 154-251 (268)
316 PLN02316 synthase/transferase 25.4 5.3E+02 0.012 33.5 11.7 26 174-199 974-999 (1036)
317 COG2022 ThiG Uncharacterized e 25.4 2.2E+02 0.0048 30.7 7.1 105 86-197 99-232 (262)
318 TIGR01037 pyrD_sub1_fam dihydr 25.3 4.2E+02 0.009 28.7 9.6 51 148-201 223-289 (300)
319 cd06329 PBP1_SBP_like_3 Peripl 25.2 3.5E+02 0.0077 29.3 9.1 74 88-166 144-231 (342)
320 cd06282 PBP1_GntR_like_2 Ligan 25.2 5E+02 0.011 26.3 9.8 89 99-197 17-113 (266)
321 PRK14183 bifunctional 5,10-met 25.1 6.2E+02 0.013 27.9 10.7 105 86-195 32-151 (281)
322 PLN02591 tryptophan synthase 25.1 2.9E+02 0.0064 29.7 8.2 48 147-197 66-129 (250)
323 cd03806 GT1_ALG11_like This fa 25.0 5.7E+02 0.012 29.1 11.0 100 87-197 273-391 (419)
324 PRK06843 inosine 5-monophospha 25.0 5.1E+02 0.011 30.0 10.5 91 87-180 165-284 (404)
325 cd03805 GT1_ALG2_like This fam 24.9 5E+02 0.011 28.2 10.3 101 87-197 245-363 (392)
326 TIGR03704 PrmC_rel_meth putati 24.7 2.9E+02 0.0063 29.4 8.1 52 87-141 110-161 (251)
327 cd06360 PBP1_alkylbenzenes_lik 24.6 3.4E+02 0.0074 28.9 8.8 75 89-166 136-221 (336)
328 PRK10669 putative cation:proto 24.3 2.7E+02 0.0058 33.1 8.5 100 87-197 440-548 (558)
329 PF01959 DHQS: 3-dehydroquinat 24.3 4.4E+02 0.0096 30.0 9.6 31 167-197 139-169 (354)
330 PRK12727 flagellar biosynthesi 24.3 2.4E+02 0.0052 34.0 7.9 53 88-141 381-436 (559)
331 PRK12723 flagellar biosynthesi 24.2 3.4E+02 0.0074 31.2 8.9 54 87-141 206-262 (388)
332 TIGR01096 3A0103s03R lysine-ar 24.1 2.9E+02 0.0063 28.1 7.8 105 85-201 129-238 (250)
333 PRK14722 flhF flagellar biosyn 24.0 2.4E+02 0.0052 32.3 7.6 59 88-147 168-231 (374)
334 COG1092 Predicted SAM-dependen 24.0 4.3E+02 0.0094 30.5 9.7 105 89-199 242-357 (393)
335 PRK14188 bifunctional 5,10-met 23.8 8.4E+02 0.018 27.0 11.6 104 86-194 33-151 (296)
336 TIGR02472 sucr_P_syn_N sucrose 23.7 5.5E+02 0.012 29.2 10.6 73 120-197 327-405 (439)
337 PRK07695 transcriptional regul 23.6 6.6E+02 0.014 25.5 10.2 57 116-178 101-174 (201)
338 TIGR00696 wecB_tagA_cpsF bacte 23.5 2.4E+02 0.0051 28.8 6.8 67 86-156 47-122 (177)
339 cd03814 GT1_like_2 This family 23.4 6.2E+02 0.013 26.4 10.3 69 120-197 257-331 (364)
340 TIGR00888 guaA_Nterm GMP synth 23.3 1.3E+02 0.0027 30.3 4.8 28 90-117 1-28 (188)
341 TIGR03590 PseG pseudaminic aci 23.2 2E+02 0.0043 31.0 6.6 63 87-156 31-101 (279)
342 COG1568 Predicted methyltransf 23.2 75 0.0016 35.1 3.2 51 89-141 177-229 (354)
343 cd06346 PBP1_ABC_ligand_bindin 23.2 4.1E+02 0.0088 28.4 9.0 73 89-166 139-222 (312)
344 PRK04296 thymidine kinase; Pro 23.1 74 0.0016 32.3 3.1 101 87-195 30-136 (190)
345 cd01080 NAD_bind_m-THF_DH_Cycl 23.1 2.9E+02 0.0063 27.9 7.3 57 84-144 41-99 (168)
346 cd01748 GATase1_IGP_Synthase T 23.0 1.4E+02 0.003 30.3 5.1 42 90-139 1-42 (198)
347 PRK10423 transcriptional repre 22.9 3.3E+02 0.0071 29.0 8.2 90 100-198 75-172 (327)
348 PRK10935 nitrate/nitrite senso 22.9 64 0.0014 37.4 2.9 34 26-65 526-559 (565)
349 PRK15010 ABC transporter lysin 22.8 3.1E+02 0.0068 28.5 7.9 55 84-141 130-184 (260)
350 TIGR01425 SRP54_euk signal rec 22.8 2.4E+02 0.0051 32.9 7.4 54 86-141 127-190 (429)
351 PRK10841 hybrid sensory kinase 22.7 4.9E+02 0.011 33.2 10.8 145 24-198 632-778 (924)
352 PRK00278 trpC indole-3-glycero 22.6 8.2E+02 0.018 26.3 11.1 79 97-180 146-239 (260)
353 PRK03659 glutathione-regulated 22.5 2.1E+02 0.0045 34.6 7.2 87 86-180 422-517 (601)
354 PRK14075 pnk inorganic polypho 22.5 3.3E+02 0.0071 29.3 8.0 82 98-198 13-94 (256)
355 PRK05752 uroporphyrinogen-III 22.5 9.2E+02 0.02 25.4 11.9 104 86-195 129-250 (255)
356 TIGR01334 modD putative molybd 22.4 1.4E+02 0.003 32.8 5.2 63 90-155 159-230 (277)
357 PRK11303 DNA-binding transcrip 22.3 5.4E+02 0.012 27.4 9.8 88 102-198 82-177 (328)
358 cd08185 Fe-ADH1 Iron-containin 22.2 1.8E+02 0.0038 32.8 6.2 63 88-154 26-102 (380)
359 COG4262 Predicted spermidine s 22.2 2.1E+02 0.0046 32.9 6.5 69 87-157 313-396 (508)
360 TIGR02470 sucr_synth sucrose s 22.1 7.2E+02 0.016 31.4 11.7 51 144-199 654-710 (784)
361 PRK13181 hisH imidazole glycer 22.1 1.9E+02 0.004 29.5 5.8 42 90-139 2-43 (199)
362 cd03822 GT1_ecORF704_like This 22.0 6.4E+02 0.014 26.4 10.1 69 120-197 258-333 (366)
363 PRK14182 bifunctional 5,10-met 21.9 1E+03 0.022 26.3 11.6 106 86-195 31-151 (282)
364 TIGR01761 thiaz-red thiazoliny 21.9 1E+03 0.022 26.9 12.0 32 167-198 83-114 (343)
365 PRK14189 bifunctional 5,10-met 21.9 7E+02 0.015 27.5 10.4 104 86-195 33-152 (285)
366 cd06292 PBP1_LacI_like_10 Liga 21.9 3.9E+02 0.0084 27.4 8.3 65 99-169 17-90 (273)
367 COG0541 Ffh Signal recognition 21.8 2.9E+02 0.0062 32.4 7.6 54 86-141 127-190 (451)
368 COG1091 RfbD dTDP-4-dehydrorha 21.8 1.8E+02 0.004 31.9 5.9 57 88-147 1-65 (281)
369 cd06267 PBP1_LacI_sugar_bindin 21.8 6.6E+02 0.014 25.0 9.8 59 101-168 19-84 (264)
370 PRK05718 keto-hydroxyglutarate 21.7 7.3E+02 0.016 26.1 10.2 90 86-182 15-136 (212)
371 cd04730 NPD_like 2-Nitropropan 21.7 6.4E+02 0.014 25.9 9.8 86 88-181 81-185 (236)
372 cd06284 PBP1_LacI_like_6 Ligan 21.6 4.4E+02 0.0096 26.7 8.6 60 99-168 17-83 (267)
373 PF13407 Peripla_BP_4: Peripla 21.5 2.1E+02 0.0045 29.3 6.1 92 99-198 16-117 (257)
374 TIGR01163 rpe ribulose-phospha 21.4 1.2E+02 0.0027 30.5 4.4 77 101-180 94-192 (210)
375 PF07652 Flavi_DEAD: Flaviviru 21.4 1.3E+02 0.0029 30.0 4.3 85 86-170 32-134 (148)
376 TIGR03669 urea_ABC_arch urea A 21.3 3.9E+02 0.0086 29.9 8.7 74 88-166 134-218 (374)
377 cd08189 Fe-ADH5 Iron-containin 21.3 3.8E+02 0.0083 30.1 8.6 63 88-154 27-102 (374)
378 cd01536 PBP1_ABC_sugar_binding 21.3 6.7E+02 0.015 25.1 9.8 63 100-169 18-87 (267)
379 PRK14184 bifunctional 5,10-met 21.2 9.3E+02 0.02 26.6 11.2 104 87-195 33-151 (286)
380 TIGR00959 ffh signal recogniti 21.1 2.5E+02 0.0055 32.6 7.2 54 86-141 127-190 (428)
381 PRK14190 bifunctional 5,10-met 21.1 7.9E+02 0.017 27.1 10.6 104 87-195 34-152 (284)
382 cd01573 modD_like ModD; Quinol 21.0 2.1E+02 0.0046 31.1 6.2 60 114-179 187-256 (272)
383 cd03812 GT1_CapH_like This fam 21.0 6E+02 0.013 26.9 9.8 101 87-198 223-331 (358)
384 cd04729 NanE N-acetylmannosami 21.0 5.8E+02 0.013 26.2 9.3 73 103-181 114-206 (219)
385 PF09456 RcsC: RcsC Alpha-Beta 21.0 1.5E+02 0.0032 27.4 4.2 82 90-195 2-91 (92)
386 TIGR01579 MiaB-like-C MiaB-lik 20.9 3.2E+02 0.007 31.1 8.0 84 97-195 10-107 (414)
387 TIGR01855 IMP_synth_hisH imida 20.8 1.8E+02 0.0039 29.7 5.4 42 90-139 1-42 (196)
388 PLN02889 oxo-acid-lyase/anthra 20.8 1.2E+02 0.0026 38.6 4.8 56 86-141 80-139 (918)
389 cd03817 GT1_UGDG_like This fam 20.7 8.8E+02 0.019 25.2 10.8 59 134-198 279-343 (374)
390 PRK08811 uroporphyrinogen-III 20.7 4.7E+02 0.01 28.1 8.8 103 84-191 15-131 (266)
391 COG3959 Transketolase, N-termi 20.4 2E+02 0.0043 30.9 5.5 52 90-141 174-240 (243)
392 COG1609 PurR Transcriptional r 20.4 3.2E+02 0.0068 30.2 7.6 92 99-198 76-173 (333)
393 cd08187 BDH Butanol dehydrogen 20.3 2.4E+02 0.0052 31.8 6.8 63 88-154 29-105 (382)
394 PF01729 QRPTase_C: Quinolinat 20.3 3.7E+02 0.0081 27.2 7.4 84 90-178 53-152 (169)
395 PRK03501 ppnK inorganic polyph 20.3 3.6E+02 0.0077 29.3 7.7 76 102-198 21-97 (264)
396 PRK12726 flagellar biosynthesi 20.3 3.8E+02 0.0082 31.1 8.2 56 86-141 233-293 (407)
397 COG0673 MviM Predicted dehydro 20.2 7.4E+02 0.016 26.7 10.4 31 167-197 84-116 (342)
398 cd06318 PBP1_ABC_sugar_binding 20.2 3.3E+02 0.0071 28.1 7.4 91 100-198 18-118 (282)
399 PF01976 DUF116: Protein of un 20.2 1.7E+02 0.0037 29.4 4.9 83 100-192 75-157 (158)
400 cd03798 GT1_wlbH_like This fam 20.2 5.7E+02 0.012 26.3 9.2 38 162-199 302-345 (377)
401 cd01575 PBP1_GntR Ligand-bindi 20.1 3.1E+02 0.0067 27.8 7.0 60 100-168 18-84 (268)
402 PRK10792 bifunctional 5,10-met 20.1 1E+03 0.022 26.3 11.2 104 87-195 35-153 (285)
403 TIGR01305 GMP_reduct_1 guanosi 20.1 1.9E+02 0.0042 32.7 5.7 48 132-181 120-178 (343)
404 cd06310 PBP1_ABC_sugar_binding 20.0 6.3E+02 0.014 25.8 9.4 91 101-198 19-119 (273)
405 cd00429 RPE Ribulose-5-phospha 20.0 2.2E+02 0.0047 28.6 5.8 74 104-180 98-193 (211)
406 PRK10416 signal recognition pa 20.0 4.1E+02 0.0089 29.5 8.3 54 86-141 141-204 (318)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.78 E-value=1e-18 Score=181.51 Aligned_cols=110 Identities=31% Similarity=0.524 Sum_probs=102.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..|...|+..||+|..+.++++|++.+.. . |||||+|+ ||++||+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999987 6 99999999 9999999999999966 45678898
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
++ .++++||||||.|||.+.||.++|+.+++|...
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 66 679999999999999999999999999998754
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.74 E-value=2.9e-17 Score=196.30 Aligned_cols=186 Identities=22% Similarity=0.296 Sum_probs=141.2
Q ss_pred CCchhHH--HHHHHHHhhhcC----------CccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCC
Q 004184 3 VDGKADK--RLQELNHCLQAG----------SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQE 70 (770)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~~----------~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~ 70 (770)
|+|.|.. ...+|+..|... +..-..+|++++++.|||.|.+.+..|. |+.|+|++|++......
T Consensus 437 D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~----Gt~f~i~lP~~~~~~~~ 512 (779)
T PRK11091 437 DSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGK----GSCFTLTIHAPAVAEEV 512 (779)
T ss_pred ecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCC----eEEEEEEEecccccccc
Confidence 5666654 334555544322 2333589999999999999999888776 55555555554332211
Q ss_pred CCCCccchhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHH
Q 004184 71 QPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149 (770)
Q Consensus 71 ~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGle 149 (770)
.... .....+...++||||||++.++..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++
T Consensus 513 ~~~~----~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~e 586 (779)
T PRK11091 513 EDAF----DEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGLD 586 (779)
T ss_pred cccc----ccccccccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHHH
Confidence 1111 111223456899999999999999999999999999999999999999986 7899999999 99999999
Q ss_pred HHHHHHhhcCCCCc-chhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 150 LLSKIMSHKTRKNL-PVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 150 Llr~IR~~~~~~~I-PIIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+++.||+......+ |||++ .++..|+++||.||++..+|..+|.+++..
T Consensus 587 ~~~~ir~~~~~~~~~~ii~~ta~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 587 IARELRERYPREDLPPLVALTANVLKDKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHHHHHhccccCCCCcEEEEECCchHhHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 99999976533443 66644 668899999999999999999999988743
No 3
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.73 E-value=4.2e-17 Score=198.36 Aligned_cols=185 Identities=23% Similarity=0.284 Sum_probs=140.3
Q ss_pred CCchhHH--HHHHHHHhhhc-------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCC
Q 004184 3 VDGKADK--RLQELNHCLQA-------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (770)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~-------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~ 73 (770)
|+|.|.. ....|+..|.. .+..-..+|++++++.|||.|.+.+..+. |..|+|++|+....+.....
T Consensus 618 D~G~Gi~~~~~~~if~~f~~~~~~~~~~g~GLGL~i~~~l~~~~gG~i~~~s~~~~----Gt~f~~~lp~~~~~~~~~~~ 693 (968)
T TIGR02956 618 DTGCGIAEEEQATLFDAFTQADGRRRSGGTGLGLAISQRLVEAMDGELGVESELGV----GSCFWFTLPLTRGKPAEDSA 693 (968)
T ss_pred eCCCCCCHHHHHHHHhhhhccCCCCCCCCccHHHHHHHHHHHHcCCEEEEEecCCC----cEEEEEEEEcCCCCcccccc
Confidence 5666654 23344444422 22334489999999999999999777665 55555555543322211111
Q ss_pred CccchhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHH
Q 004184 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (770)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr 152 (770)
. .........+||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++
T Consensus 694 ~-----~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~ 766 (968)
T TIGR02956 694 T-----LTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTLLQ 766 (968)
T ss_pred c-----cccccccccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHH
Confidence 1 01123455689999999999999999999999999999999999999987 7899999999 99999999999
Q ss_pred HHHhhcCCCC-cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 153 KIMSHKTRKN-LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 153 ~IR~~~~~~~-IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.||....... +|||++ .++..|+++||.||++..+|...|..++..
T Consensus 767 ~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 767 QLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred HHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 9998653333 888855 678999999999999999999999988753
No 4
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.72 E-value=1.6e-18 Score=134.98 Aligned_cols=45 Identities=47% Similarity=0.976 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcccCCCCccchhhhhhhhhhCCCccceeeeccc
Q 004184 715 REAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRGQFVRQTA 759 (770)
Q Consensus 715 r~~~~~r~~~kr~~r~~~k~iry~~rk~~a~~r~r~~g~f~~~~~ 759 (770)
|+++|+||++||++|+|+|+|||+|||.+|+.|||||||||+..+
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999753
No 5
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.72 E-value=6.4e-17 Score=196.01 Aligned_cols=184 Identities=18% Similarity=0.254 Sum_probs=138.0
Q ss_pred CCchhHH--HHHHHHHhhhc-----CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCc
Q 004184 3 VDGKADK--RLQELNHCLQA-----GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGA 75 (770)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~-----~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~ 75 (770)
|+|.|+. ...+|+..|.. .+..-..+|++++++.|||.+.+.+..+. |..|+|.+|+....+. ++..
T Consensus 599 D~G~Gi~~~~~~~if~~f~~~~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~----Gt~f~i~lP~~~~~~~--~~~~ 672 (914)
T PRK11466 599 DSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEV----GSCFCLRLPLRVATAP--VPKT 672 (914)
T ss_pred ECCCCCCHHHHHHHhchhhcCCCCCCCCcccHHHHHHHHHHcCCEEEEEecCCC----CeEEEEEEEccccccc--cccc
Confidence 5677654 22334433321 22344589999999999999999877765 4555555544322111 1111
Q ss_pred cchhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHH
Q 004184 76 MVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKI 154 (770)
Q Consensus 76 ~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~I 154 (770)
.........++||||||++.++..+..+|+..||.|..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.|
T Consensus 673 ---~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~-~~~~Dlvl~D~~mp~~~G~~~~~~l 748 (914)
T PRK11466 673 ---VNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQN-SEPFAAALVDFDLPDYDGITLARQL 748 (914)
T ss_pred ---cccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHc-CCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 111122356799999999999999999999999999999999999998864 24689999999 9999999999999
Q ss_pred HhhcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 155 R~~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|+.. +.+|||++ .++..|+++||.||++.++|..+|.++++.
T Consensus 749 r~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 749 AQQY--PSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred HhhC--CCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 9753 67888755 568899999999999999999999998854
No 6
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.72 E-value=7.7e-17 Score=194.88 Aligned_cols=110 Identities=24% Similarity=0.443 Sum_probs=99.1
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc--CCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~--~~~~I 163 (770)
.++||||||++.++..+..+|+.+||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQ--HRFDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 4689999999999999999999999999999999999999987 7899999999 99999999999999743 23668
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ .++..|+++||.||++.++|..+|.++++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 88865 678899999999999999999999887653
No 7
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.68 E-value=6.9e-16 Score=188.57 Aligned_cols=111 Identities=32% Similarity=0.550 Sum_probs=101.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+|+|+++++.||+.. +.+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~--~~~DlVl~D~~mP~mdG~el~~~ir~~~--~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLTDVNMPNMDGYRLTQRLRQLG--LTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 45689999999999999999999999999999999999999987 7899999999 99999999999999864 5688
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ ++++.|+++||.||++.++|..+|.++.++.+
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~r 921 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERVR 921 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 8865 67899999999999999999999998877653
No 8
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.68 E-value=4.7e-16 Score=187.88 Aligned_cols=110 Identities=27% Similarity=0.406 Sum_probs=100.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||+....+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQ--RPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 5789999999999999999999999999999999999999987 7899999999 999999999999998655567888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|++ ++++.|+++||.||++..+|...|.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 865 678999999999999999999999887653
No 9
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.67 E-value=4.8e-16 Score=193.83 Aligned_cols=166 Identities=24% Similarity=0.307 Sum_probs=129.0
Q ss_pred ccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHH
Q 004184 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHV 102 (770)
Q Consensus 23 ~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~ 102 (770)
..-..+|+++|++.|||.+.+.+..+. |.. |++.+|.......................++||||||++..+..
T Consensus 900 ~GLGL~i~~~iv~~~gG~i~v~s~~~~----Gt~--f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~ 973 (1197)
T PRK09959 900 SGLGLMICKELIKNMQGDLSLESHPGI----GTT--FTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLL 973 (1197)
T ss_pred cCchHHHHHHHHHHcCCEEEEEeCCCC----cEE--EEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHH
Confidence 344589999999999999999877664 444 44444433221111100000111112245789999999999999
Q ss_pred HHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh----------hhH
Q 004184 103 VAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCL 171 (770)
Q Consensus 103 L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl----------~al 171 (770)
+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... +.+|||++ .++
T Consensus 974 l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~i~~~~--~~~pii~lt~~~~~~~~~~~~ 1049 (1197)
T PRK09959 974 LKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGLTANAQANEREKGL 1049 (1197)
T ss_pred HHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEEEEECCCCHHHHHHHH
Confidence 999999999999999999999999987 7899999999 99999999999998753 56788754 678
Q ss_pred hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..|+++||.||++.++|..+|.+++..
T Consensus 1050 ~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1050 SCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred HCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999999887643
No 10
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.67 E-value=2.4e-16 Score=177.11 Aligned_cols=112 Identities=29% Similarity=0.548 Sum_probs=100.7
Q ss_pred CcEEEEEecChhhHHHHHHHHH--hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLR--NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe--~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
+.+||||||++.+|+.|+.++. .+||+|+ +|.||.+||+++.+ ..|||||+|+ ||+|||++|++.|++.. +.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e--~~pDiviTDI~MP~mdGLdLI~~ike~~--p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQE--TQPDIVITDINMPGMDGLDLIKAIKEQS--PD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 4689999999999999999985 6699988 99999999999998 8999999999 99999999999999865 55
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
+-+||+ +|+..|+.|||+||++.++|..+|.++.......
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 555544 8999999999999999999999999998876443
No 11
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.65 E-value=8.4e-16 Score=155.76 Aligned_cols=114 Identities=27% Similarity=0.441 Sum_probs=101.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++|||||||+.+.++-+.+++.. ||.++ +|.++++|..++.. ..|||||+|+ ||+.+|++|+..||......++.
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~--~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEE--FKPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHh--hCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 47999999999999999999987 89887 99999999999997 7789999999 99999999999999887555555
Q ss_pred hh--------hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 165 VI--------IFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 165 II--------vl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
|| +-++++.|+.|||+|||..+.|..+|.+..++.+.-.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 55 2278999999999999999999999999988876554
No 12
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.65 E-value=7.5e-16 Score=173.23 Aligned_cols=110 Identities=33% Similarity=0.561 Sum_probs=102.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++.+|..+..+|+..||.|..+.++.+|++++.. ..|||||+|+ ||++||+++++.|++.. +.+||
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~--~~~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~pV 79 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSE--SPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPV 79 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhC--CCCCE
Confidence 3479999999999999999999999999999999999999997 5799999999 99999999999999875 78999
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|++ .|++.||.|||.|||+++.|...|.+++....
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred EEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 854 78999999999999999999999999998654
No 13
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.62 E-value=2.9e-15 Score=134.68 Aligned_cols=100 Identities=33% Similarity=0.627 Sum_probs=93.7
Q ss_pred EEEEecChhhHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~-eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIv 167 (770)
||||||++..+..+..+|+..|| +|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+... +.+|+|+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcc--cCceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 89999999999999988 7899999999 99999999999999876 7788885
Q ss_pred h----------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 168 F----------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 168 l----------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
+ +++++|+++||.||++.++|.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 5 7899999999999999999999874
No 14
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.60 E-value=1.7e-14 Score=174.36 Aligned_cols=186 Identities=20% Similarity=0.129 Sum_probs=137.0
Q ss_pred CCchhHHHHHHHHHhhhc------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCcc
Q 004184 3 VDGKADKRLQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAM 76 (770)
Q Consensus 3 ~~g~g~~r~~~L~~~l~~------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~ 76 (770)
|+|.|+. ...+.++|.. .+..-..+|++++++.+||.+.+.+..+. |. +|++.+|.....+..+...
T Consensus 614 D~G~GI~-~e~~~~iFe~F~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~g~----Gt--~f~i~LP~~~~~~~~~~~~ 686 (828)
T PRK13837 614 DTGAGID-EAVLPHIFEPFFTTRAGGTGLGLATVHGIVSAHAGYIDVQSTVGR----GT--RFDVYLPPSSKVPVAPQAF 686 (828)
T ss_pred ECCCCCC-HHHHHHhhCCcccCCCCCCcchHHHHHHHHHHCCCEEEEEecCCC----eE--EEEEEEeCCCCCCCCcccc
Confidence 5677765 2244444422 23344589999999999999999777664 44 4555444432221111111
Q ss_pred chhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 77 VCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 77 ~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
..........+.+||||||++..+..+..+|...||+++.+.++.+|++.+......||+||+ .||+++|+++++.|+.
T Consensus 687 ~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~ 765 (828)
T PRK13837 687 FGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHA 765 (828)
T ss_pred CCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHh
Confidence 111111223456899999999999999999999999999999999999999763345899999 5899999999999987
Q ss_pred hcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 157 HKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 157 ~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.. +.+|||++ .++..| ++||.||++..+|..+|.+++++.
T Consensus 766 ~~--~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 766 AA--PTLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred hC--CCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 54 67888865 567889 999999999999999999998764
No 15
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.59 E-value=4.7e-15 Score=147.86 Aligned_cols=112 Identities=29% Similarity=0.440 Sum_probs=101.8
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.-|.|||||..+|+.+..+|+..||++.++.++.+.|..... ..|-++|+|+ ||+++|++|..+|.+.. ..+|||
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PVI 80 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPVI 80 (202)
T ss_pred CeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcC--CCCCEE
Confidence 469999999999999999999999999999999999998654 7899999999 99999999999998865 678888
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
++ ++++.||.|||.|||+...|+++|.+++++.....
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~ 127 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRR 127 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 54 89999999999999999999999999998865443
No 16
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-14 Score=156.61 Aligned_cols=112 Identities=37% Similarity=0.583 Sum_probs=102.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh-hcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS-HKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~-~~~~~~I 163 (770)
..++||+|||.+.++..++.+|+..||.|..|.+|++|++++.. ..+|+||+|+ ||+|+|+++|.+|+. .+....|
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~--~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE--EPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcc--cCCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 56799999999999999999999999999999999999999987 6799999999 999999999999998 6667889
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|||++ +++..||++||.|||++.+|..++...+..+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99965 6788999999999999999999997665443
No 17
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.54 E-value=7.7e-14 Score=128.43 Aligned_cols=109 Identities=36% Similarity=0.664 Sum_probs=93.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCC-CceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGL-QAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~-EALe~L~~~~~-~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+||||||++..+..+..+|...|+.|..+.++. +|++.++. . .||+||+|+ ||+++|++++++||.. .+.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~--~~~~dlii~D~~mp~~~G~~~~~~l~~~--~~~ 79 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRE--LPQPDLILLDINMPGMDGIELLRRLRAR--GPN 79 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCC
Confidence 457999999999999999999999999999999995 99999987 6 499999999 9999999999999976 345
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHH-HHHHHHHHHHH
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNE-LKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~ee-L~~~L~~vlrr 198 (770)
+|+|++ .++..|+++||.||+...+ |..++.+++..
T Consensus 80 ~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 665432 4577899999999977777 77777766544
No 18
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.51 E-value=9.8e-14 Score=142.55 Aligned_cols=108 Identities=28% Similarity=0.426 Sum_probs=96.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G-~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++.++..|+.+|...+ ++|+ .+.++.++++.+.. ..||+||+|+ ||+++|+++++.|++.. +.++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~~--p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRARG--PDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHHC--CCCc
Confidence 479999999999999999998775 8877 88889999999877 8899999999 99999999999999654 6666
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ +++++||++||.|..++++|..+|+.++...
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 6643 8899999999999999999999999998654
No 19
>PLN03029 type-a response regulator protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=142.18 Aligned_cols=114 Identities=32% Similarity=0.605 Sum_probs=99.3
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEcc-CCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLT------------------NHIDLVLTEV-MPCLS 146 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~------------------~~pDLVLlDi-MPgmd 146 (770)
..++||||||++..+..+..+|+.+||+|.++.++.+|++.+.... ..+||||+|+ ||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 5689999999999999999999999999999999999999986411 1467999999 99999
Q ss_pred HHHHHHHHHhhcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+++++.|++......+|||++ +++..|+++||.||+...+|..++.++++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 9999999998654567888855 7789999999999999999988888777654
No 20
>PRK13557 histidine kinase; Provisional
Probab=99.50 E-value=3.3e-13 Score=152.27 Aligned_cols=185 Identities=20% Similarity=0.243 Sum_probs=134.1
Q ss_pred CCCchhHHHHHHHHHhhhc--------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCC
Q 004184 2 NVDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQ 73 (770)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~ 73 (770)
.++|.|.. ...+.++|.. .+..-..+|++.+++.+||.+.+.+..+. |++|++.+|........+
T Consensus 330 ~D~G~Gi~-~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~------G~~f~i~lP~~~~~~~~~ 402 (540)
T PRK13557 330 TDTGSGMP-PEILARVMDPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGE------GTTVRLYFPASDQAENPE 402 (540)
T ss_pred EcCCCCCC-HHHHHhccCCCcccCCCCCCCCccHHHHHHHHHHCCCEEEEEecCCC------ceEEEEEeeCCCCccCCC
Confidence 35677664 2234444421 23344589999999999999999776654 444555444432211111
Q ss_pred CccchhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHH
Q 004184 74 GAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALL 151 (770)
Q Consensus 74 ~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdGleLl 151 (770)
.. ............+||||+|++..+..+..+|+..||.+..+.++.+|++.+.. ...||+||+|. ||+ ++|++++
T Consensus 403 ~~-~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~d~vi~d~~~~~~~~~~~~~ 480 (540)
T PRK13557 403 QE-PKARAIDRGGTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDS-HPEVDLLFTDLIMPGGMNGVMLA 480 (540)
T ss_pred CC-CCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhc-CCCceEEEEeccCCCCCCHHHHH
Confidence 11 11111122345689999999999999999999999999999999999999864 23699999999 997 9999999
Q ss_pred HHHHhhcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 152 r~IR~~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+.|+... +.+|||++ .++..|+.+||.||+..++|...|..++.
T Consensus 481 ~~l~~~~--~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 481 REARRRQ--PKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred HHHHHhC--CCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 9998754 45677644 45778999999999999999999988765
No 21
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.50 E-value=9.2e-14 Score=155.46 Aligned_cols=114 Identities=29% Similarity=0.532 Sum_probs=106.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||||||+...+..++.+|...||+|..+.++.+|+..+.+ ..||+||+|+ ||++||+++++++|.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e--~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE--LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhc--CCCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 35789999999999999999999999999999999999999988 7999999999 99999999999999988888999
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
||++ +|++.|++|||.||+...+|...+++.+++.+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 9954 899999999999999999999999999988653
No 22
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.47 E-value=4e-13 Score=137.67 Aligned_cols=111 Identities=25% Similarity=0.388 Sum_probs=96.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC-GYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~-G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.++||||||++.++..+..+|+.. +|. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... +.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~--~~pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIER--FKPGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 478999999999999999999864 786 5599999999999987 7899999999 99999999999998753 345
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
+||++ ++++.||++||.||++.++|..+|++++.....
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 66643 678999999999999999999999998776544
No 23
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.47 E-value=9.6e-14 Score=166.88 Aligned_cols=112 Identities=27% Similarity=0.500 Sum_probs=102.5
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+.+||||||+..++.+...+|+.+|.++.++.+|.||++.+.. ...||+||||+ ||.|||+++.++||+... ..
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~ 740 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WH 740 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CC
Confidence 4567899999999999999999999999999999999999999983 47899999999 999999999999998754 78
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+|||++ +|++.|+|+||.|||+.+.|...|.+++.
T Consensus 741 ~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 741 LPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred CCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999966 78999999999999999999999888763
No 24
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.47 E-value=4.2e-13 Score=134.72 Aligned_cols=107 Identities=28% Similarity=0.503 Sum_probs=97.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
|+||||||++..+..+...|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNE--HLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 479999999999999999999999999999999999999987 7899999999 99999999999998753 567887
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .++..||++||.||++..+|...|..++++
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 54 678999999999999999999999988875
No 25
>PRK11173 two-component response regulator; Provisional
Probab=99.47 E-value=4.8e-13 Score=136.28 Aligned_cols=108 Identities=29% Similarity=0.529 Sum_probs=98.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+...|+..||.|..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|++. ..+||
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pi 77 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--NDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHhcC---CCCCE
Confidence 4589999999999999999999999999999999999999987 7899999999 9999999999999864 35777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..|+++||.||++..+|...|..++++.
T Consensus 78 i~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 754 5789999999999999999999999998874
No 26
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.46 E-value=6.2e-13 Score=133.86 Aligned_cols=107 Identities=30% Similarity=0.541 Sum_probs=97.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
|+||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii 76 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSAN--KGMPIL 76 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 479999999999999999999999999999999999998876 7799999999 99999999999998753 567877
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .+++.||++||.||++..+|..+|..++++
T Consensus 77 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 77 LLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 54 678999999999999999999999988765
No 27
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.45 E-value=6.6e-13 Score=133.27 Aligned_cols=107 Identities=26% Similarity=0.427 Sum_probs=96.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. ..+|+|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 579999999999999999999999999999999999998876 7799999999 9999999999999864 357777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .++..|+++||.||++..+|...|..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 54 6789999999999999999999999988764
No 28
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.45 E-value=9.6e-13 Score=130.77 Aligned_cols=109 Identities=33% Similarity=0.490 Sum_probs=98.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLES--GHYSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 479999999999999999999999999999999999999976 7799999999 99999999999998753 567777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++ .++..|+++||.||++.++|..+|..++++..
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 120 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRHQ 120 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhhc
Confidence 54 67899999999999999999999999887653
No 29
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.45 E-value=8.3e-13 Score=133.13 Aligned_cols=109 Identities=28% Similarity=0.492 Sum_probs=98.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+...|+..||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 579999999999999999999999999999999999999876 7899999999 9999999999999875434577887
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .++.+|+++||.||++..+|..+|..++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 54 678999999999999999999999998876
No 30
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.44 E-value=9.8e-13 Score=130.81 Aligned_cols=110 Identities=30% Similarity=0.560 Sum_probs=98.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..|+++..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii 80 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE--RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHh--cCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEE
Confidence 579999999999999999999999999999999999999987 7799999999 9999999999999875434567777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .++..|+++||.||++.++|..+|..++++.
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 54 6789999999999999999999999888663
No 31
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.43 E-value=1.4e-12 Score=130.56 Aligned_cols=108 Identities=28% Similarity=0.502 Sum_probs=98.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|+|
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~---~~~~ii 77 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSR---STVGII 77 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhC---CCCCEE
Confidence 589999999999999999999999999999999999999876 7799999999 9999999999999874 357777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++ .++..||++||.||++..+|...|..++++..
T Consensus 78 ~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~~ 121 (221)
T PRK10766 78 LVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRIS 121 (221)
T ss_pred EEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhhc
Confidence 54 67899999999999999999999999988743
No 32
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.43 E-value=2.6e-13 Score=142.83 Aligned_cols=108 Identities=20% Similarity=0.471 Sum_probs=97.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++|+|||||......|..+|.+.|..+..|....+|++.|.. ..|||||+|+ ||+|+|+++++++|... +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~--~kpDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV--FKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHh--cCCCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 479999999999999999999999888899999999999998 8999999999 99999999999999876 788988
Q ss_pred hh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl--------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .++...++|||.||++++.|..+|.++.++.
T Consensus 77 fIssh~eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 77 FISSHAEYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEecchhhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 76 3455567899999999999999999988654
No 33
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.42 E-value=1.5e-12 Score=132.33 Aligned_cols=109 Identities=28% Similarity=0.469 Sum_probs=98.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+..+|+..||++..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+... +.+||
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~--~~~pi 80 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQN--NPTPI 80 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 4589999999999999999999999999999999999999876 7899999999 99999999999998753 56788
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..|+++||.||++.++|...|..++++.
T Consensus 81 i~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 81 IMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 754 6789999999999999999999999988763
No 34
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.42 E-value=1.5e-12 Score=129.89 Aligned_cols=109 Identities=29% Similarity=0.480 Sum_probs=98.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..+...|...||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~i 78 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAFH--PALPV 78 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 4689999999999999999999999999999999999998876 7799999999 99999999999998753 56777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..|+++||.||++..+|..+|..++++.
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 754 6789999999999999999999999887654
No 35
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.42 E-value=1.6e-12 Score=129.23 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=97.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||++..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREKG--QREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 479999999999999999999999999999999999998876 6799999999 99999999999998753 567777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .++..||++||.||++.++|..+|..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 54 6789999999999999999999999888764
No 36
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.41 E-value=1.7e-12 Score=132.18 Aligned_cols=107 Identities=23% Similarity=0.357 Sum_probs=96.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||.+..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. ..+|+|
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~--~~~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILR--EQPDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 479999999999999999999999999999999999999987 7899999999 9999999999999874 245666
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .++..|+++||.||+...+|..++..++++.
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 43 6789999999999999999999999988774
No 37
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.41 E-value=1.9e-12 Score=132.65 Aligned_cols=106 Identities=24% Similarity=0.469 Sum_probs=96.1
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIv 167 (770)
+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.|+.. ..+|+|+
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii~ 77 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLAS--ETVDVVVVDLNLGREDGLEIVRSLATK---SDVPIII 77 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEEE
Confidence 79999999999999999999999999999999999999976 7899999999 9999999999999864 3567764
Q ss_pred h-----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 168 F-----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 168 l-----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+ .++..||++||.||++..+|...|+.++++.
T Consensus 78 lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 78 ISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 4 5688999999999999999999999988763
No 38
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.39 E-value=3.3e-12 Score=128.39 Aligned_cols=107 Identities=26% Similarity=0.396 Sum_probs=96.5
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCCCcch
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg--mdGleLlr~IR~~~~~~~IPI 165 (770)
+||||||++..+..+..+|+..||.+..+.++.+++..+.. ..||+||+|+ ||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQ--RLPDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHh--CCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 69999999999999999999999999999999999999877 7899999999 997 58999999998753 46777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++.+||++||.||+...+|..+|+.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 754 6789999999999999999999999998764
No 39
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.39 E-value=2.9e-12 Score=132.35 Aligned_cols=111 Identities=23% Similarity=0.376 Sum_probs=95.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++.++..+..+|... ++.++ .+.++.++++.+......|||||+|+ ||+++|+++++.|++.. +.+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~~ 79 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKSD 79 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCCC
Confidence 68999999999999999999864 77755 88999999998863225699999999 99999999999998754 5677
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .++..|+++||.||++.++|..+|.+++.+..
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~ 125 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7754 67899999999999999999999998776543
No 40
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.39 E-value=3e-12 Score=128.63 Aligned_cols=106 Identities=35% Similarity=0.554 Sum_probs=95.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||.+..+.++.+++..+. ..||+||+|+ ||+++|+++++.|+... + +|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~---~~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhh---cCCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEE
Confidence 48999999999999999999999999999999999999875 3599999999 99999999999998754 2 6777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .+++.|+++||.||++..+|..+|..++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 44 6789999999999999999999999988764
No 41
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.38 E-value=4e-12 Score=126.94 Aligned_cols=106 Identities=27% Similarity=0.502 Sum_probs=95.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
|+||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 479999999999999999999999999999999999999876 7899999999 9999999999999864 356777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .++..||++||.||+...+|..+|..++++
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 44 678999999999999999999999988765
No 42
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.37 E-value=6.1e-12 Score=127.01 Aligned_cols=109 Identities=33% Similarity=0.569 Sum_probs=97.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~--~~~d~illd~~~~~~~g~~~~~~l~~~---~~~~ 79 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRK--EQPDLVILDVMMPKLDGYGVCQEIRKE---SDVP 79 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCc
Confidence 45789999999999999999999999999999999999998876 7799999999 9999999999999864 4677
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .++..|+++||.||++.++|..+|..++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 7744 6789999999999999999999999888653
No 43
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.36 E-value=5.2e-12 Score=128.04 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=94.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCC---CCHHHHHHHHHhhcC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY-E-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPC---LSGVALLSKIMSHKT 159 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~-e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg---mdGleLlr~IR~~~~ 159 (770)
..++||||||++..+..++.+|+..++ . +..+.++.++++.+.. ..|||||+|+ ||+ ++|++++++|+...
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~- 78 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPK--LDAHVLITDLSMPGDKYGDGITLIKYIKRHF- 78 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh--CCCCEEEEeCcCCCCCCCCHHHHHHHHHHHC-
Confidence 457999999999999999999987754 4 5589999999999986 7799999999 999 59999999998753
Q ss_pred CCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 160 RKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 160 ~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+.+|||++ .+++.|+++||.||+.+++|..+|+.++..
T Consensus 79 -~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 79 -PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred -CCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 56777754 679999999999999999999999988754
No 44
>PRK14084 two-component response regulator; Provisional
Probab=99.35 E-value=7.6e-12 Score=128.75 Aligned_cols=108 Identities=25% Similarity=0.423 Sum_probs=93.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG-Y-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G-~-eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++..+..+..+|+..+ + .+..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|++.. +..+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~--~~~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLI--NQYDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 479999999999999999999875 4 46689999999999987 7799999999 99999999999998754 3445
Q ss_pred hhhh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl--------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .+++.|+++||.||+..++|..+|.++++..
T Consensus 77 iI~~t~~~~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHDQFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecChHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 5533 7789999999999999999999999887654
No 45
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.35 E-value=6.2e-12 Score=131.17 Aligned_cols=110 Identities=20% Similarity=0.403 Sum_probs=95.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.++||||||++..+..+..+|... ++.++ .+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKE--QQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 468999999999999999999864 56665 79999999999987 7899999999 9999999999999976544346
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ .++..|+++||.||++.++|...|.+++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 77644 678999999999999999999999887653
No 46
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.34 E-value=9.5e-12 Score=123.29 Aligned_cols=106 Identities=31% Similarity=0.518 Sum_probs=95.7
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
||||||++..+..+...|+..|+.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEE
Confidence 6899999999999999999999999999999999999976 7899999999 99999999999998653 56777754
Q ss_pred ----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 169 ----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 169 ----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.++..|+++||.||+...+|...+..++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 6789999999999999999999999887654
No 47
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.33 E-value=6e-12 Score=121.68 Aligned_cols=135 Identities=16% Similarity=0.225 Sum_probs=107.2
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh-
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI- 166 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII- 166 (770)
..||||||..+...|.+.|+..||.|.++.+.+|||..++. ..|...++|+ |.+.+|+++++.||+......+.|+
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art--~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART--APPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhc--CCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 58999999999999999999999999999999999999998 8899999999 9999999999999987643333333
Q ss_pred -------hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCCCCCCCcchhhhhhhhccccccc
Q 004184 167 -------IFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESCTQTQKSIKSKNVENS 225 (770)
Q Consensus 167 -------vl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s~~~ses~~~~~~~~k~k~~~~~ 225 (770)
.++|++.||++||.||-+.+++..++.+-..-.........-+..+.+++.-++..+.-
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS~~rl~WEhIqrvl~e~ 154 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMSADRLRWEHIQRVLEEC 154 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCchhHhhHHHHHHHHHHh
Confidence 23889999999999999999998887654322222333334455666666666655443
No 48
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.33 E-value=8.9e-12 Score=122.96 Aligned_cols=107 Identities=21% Similarity=0.330 Sum_probs=95.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
|+||||||++..+..+...|+..||.+. .+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHc--cCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 4799999999999999999999999987 79999999999987 7899999999 99999999999998753 44566
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|++ .++..|+++||.||++.++|..+|+.+++.
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 643 678999999999999999999999998754
No 49
>PRK09483 response regulator; Provisional
Probab=99.32 E-value=1.1e-11 Score=123.54 Aligned_cols=108 Identities=28% Similarity=0.449 Sum_probs=96.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+++||||||++..+..+..+|+.. ++.++ .+.++.+++..+.. ..|||||+|+ ||+++|+++++.|+... +.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRT--NAVDVVLMDMNMPGIGGLEATRKILRYT--PDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 368999999999999999999875 88886 79999999999987 7899999999 99999999999998753 567
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ .++..|+++||.||++.++|..+|..+++.
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g 121 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 77754 678899999999999999999999988764
No 50
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.32 E-value=5.1e-12 Score=139.69 Aligned_cols=110 Identities=26% Similarity=0.424 Sum_probs=97.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||||||++..+..+..+|. +.+.+..+.++.+|+..+.. ..|||||+|+ ||+++|+++++.|++....+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~-~~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILK-EEFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHh-hcceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 45789999999999999999995 45788899999999999876 7899999999 99999999999999765457888
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ .++..||+|||.||+++++|...|...+++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 8855 789999999999999999999998876654
No 51
>PRK13435 response regulator; Provisional
Probab=99.31 E-value=2.7e-11 Score=114.61 Aligned_cols=114 Identities=23% Similarity=0.301 Sum_probs=98.4
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~ 161 (770)
+.+++|||+|+++..+..+..+|+..||.++ .+.++.++++.+.. ..|||||+|+ ++ +.+|+++++.++.. .
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRR--RQPDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhh--cCCCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 4568999999999999999999999999987 78999999998876 6799999999 97 58999999999753 3
Q ss_pred Ccchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 162 NLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 162 ~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
.+|+|++ .++..|+++||.||++..+|...|.+++.+....+
T Consensus 78 ~~pii~ls~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 126 (145)
T PRK13435 78 GVEVVFMTGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSARRVGDR 126 (145)
T ss_pred CCCEEEEeCCHHHHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcccc
Confidence 6777755 56778999999999999999999999987655443
No 52
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.31 E-value=1.5e-11 Score=139.37 Aligned_cols=109 Identities=31% Similarity=0.486 Sum_probs=99.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..|||||+|+ ||+++|+++++.|+... +.+||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~--~~~DlvllD~~lp~~dgl~~l~~ir~~~--~~~pv 78 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV 78 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEECCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 4689999999999999999999999999999999999999987 7899999999 99999999999998754 56777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .+++.|+++||.||+..++|...|.+++...
T Consensus 79 Ivlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 754 6789999999999999999999999888654
No 53
>PRK15115 response regulator GlrR; Provisional
Probab=99.31 E-value=1.2e-11 Score=139.04 Aligned_cols=109 Identities=27% Similarity=0.540 Sum_probs=98.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+... +.+|
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~~--~~~p 79 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKVQ--PGMP 79 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 45789999999999999999999999999999999999999986 7899999999 99999999999998753 5677
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ .++..|+++||.||+...+|...|..+++.
T Consensus 80 vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 80 VIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 7754 678999999999999999999999988764
No 54
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.30 E-value=1.8e-11 Score=125.04 Aligned_cols=107 Identities=25% Similarity=0.458 Sum_probs=90.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG-YEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G-~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+++||||||++..+..|..+|+.++ +.+ ..+.++.++++.+.. ..|||||+|+ ||+++|+++++.|+.. ...
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlv~lDi~~~~~~G~~~~~~l~~~---~~~ 75 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHR--LKPDVVFLDIQMPRISGLELVGMLDPE---HMP 75 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHhccc---CCC
Confidence 3689999999999999999999887 444 478999999999986 6799999999 9999999999998632 122
Q ss_pred chhh--------hhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVII--------FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIv--------l~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+||+ ..+++.|+.+||.||+..++|..+|.++.+.
T Consensus 76 ~ii~vt~~~~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 76 YIVFVTAFDEYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEEEeccHHHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 3442 3778999999999999999999999988754
No 55
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.29 E-value=2.9e-11 Score=119.15 Aligned_cols=110 Identities=16% Similarity=0.345 Sum_probs=96.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+||||||++..+..+..+|+.. ++.+. .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~--~~ 77 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQIQ--ST 77 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CC
Confidence 3568999999999999999999877 58876 78899999999876 7899999999 99999999999998753 55
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+|||++ .++..|+++||.||+..++|..+|..++.+.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 78 VKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred CcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 777744 6789999999999999999999999887653
No 56
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.28 E-value=6.9e-11 Score=104.34 Aligned_cols=112 Identities=28% Similarity=0.548 Sum_probs=97.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+.++|||+++++.....+...|+..|+. +..+.++.+++..+.. ..+|+||+|. +++++|+++++.|+.....+.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~ 81 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSAL 81 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCC
Confidence 4578999999999999999999999985 6789999999998876 7799999999 9999999999999876444556
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+|++ .++..|+++|+.||++..+|...+.+++++.
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~~ 127 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHHc
Confidence 66633 6688999999999999999999999988764
No 57
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.28 E-value=1.8e-11 Score=137.19 Aligned_cols=110 Identities=33% Similarity=0.580 Sum_probs=99.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+..+|+.+||.|..+.++.+++..+.. ..|||||+|+ ||+++|+++++.|+... +.+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~ 79 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKALN--PAIP 79 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCe
Confidence 35799999999999999999999999999999999999999986 7799999999 99999999999998753 5677
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .++..|+.+||.||++.++|...|.+++.+.
T Consensus 80 vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 80 VLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7744 6788999999999999999999999888653
No 58
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.26 E-value=5.9e-11 Score=117.87 Aligned_cols=108 Identities=29% Similarity=0.524 Sum_probs=96.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..|+.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+|+|
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 479999999999999999999999999999999999998876 7799999999 99999999999998754 456776
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ +++..|+++||.||+...+|...+..++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 44 6789999999999999999999999888764
No 59
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.25 E-value=7e-11 Score=119.30 Aligned_cols=108 Identities=23% Similarity=0.473 Sum_probs=96.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|...|+.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|+|
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRRF---SDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 389999999999999999999999999999999999999986 7799999999 9999999999999863 357777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++ .++..|+++||.||+...+|..+|..++++..
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~~ 129 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhcc
Confidence 44 67899999999999999999999998887643
No 60
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.25 E-value=4.1e-11 Score=117.51 Aligned_cols=104 Identities=27% Similarity=0.372 Sum_probs=90.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-G~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++..+..+..+|... ++.+ ..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+. .+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~-----~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLPK-----GMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHcc-----CCC
Confidence 58999999999999999999754 6764 589999999999976 7899999999 999999999999863 356
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ .++..|+++||.||++.++|..+|+.+++.
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 6643 678999999999999999999999998864
No 61
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.24 E-value=4e-11 Score=130.80 Aligned_cols=105 Identities=25% Similarity=0.385 Sum_probs=88.4
Q ss_pred cEEEEEecChhhHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLR-NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe-~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++..+..+..+|+ ..+|+++ .+.++++|++.+.. ..||+||+|+ ||+++|++++++|+... .+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~--~~pDlVllD~~mp~~~G~e~l~~l~~~~---~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAA--QPPDVILMDLEMPRMDGVEATRRIMAER---PCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhc--cCCCEEEEcCCCCCCCHHHHHHHHHHHC---CCc
Confidence 479999999999999999994 6689887 78999999999987 7899999999 99999999999998743 367
Q ss_pred hhhh------------hhHhcCCCcEEeCCC---------CHHHHHHHHHHHHH
Q 004184 165 VIIF------------KCLSKGAVDFLVKPI---------RKNELKNLWQHVWR 197 (770)
Q Consensus 165 IIvl------------~al~aGAddyL~KP~---------~~eeL~~~L~~vlr 197 (770)
||++ ++++.|+++||.||+ ..++|...|+.+.+
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 7644 468899999999999 45556666655543
No 62
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.23 E-value=4.8e-11 Score=134.50 Aligned_cols=107 Identities=31% Similarity=0.580 Sum_probs=96.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||+|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlillD~~~p~~~g~~ll~~i~~~~--~~~pvI 80 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFAD--IHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPVI 80 (457)
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 489999999999999999999999999999999999999987 7899999999 99999999999998753 567877
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .++..|+++||.||++.++|...|..++..
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 54 678999999999999999999998877654
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.22 E-value=9.8e-11 Score=129.48 Aligned_cols=110 Identities=28% Similarity=0.429 Sum_probs=99.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|...||.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+.....+.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICER--EQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 479999999999999999999889999999999999999987 7899999999 9999999999999875444567887
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ +++..|+++||.||++.++|..+|..+++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 54 6789999999999999999999999887653
No 64
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.22 E-value=6.3e-11 Score=133.88 Aligned_cols=105 Identities=32% Similarity=0.538 Sum_probs=95.5
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
||||||++..+..+..+|+..||.|..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+... +.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALAR--GQPDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Confidence 6899999999999999999999999999999999999986 7899999999 99999999999998753 56777754
Q ss_pred ----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 169 ----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 169 ----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.++..|+++||.||+..++|..+|.+++..
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999988764
No 65
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.22 E-value=8.1e-11 Score=129.12 Aligned_cols=94 Identities=32% Similarity=0.585 Sum_probs=83.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
..++||||||++..+..+..+|+.. ++.++ .+.++.+|+..+.. ..|||||+|+ ||+++|++++++|++.. +
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~--~~~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKK--LNPDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhh--hCCCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 4579999999999999999999876 88887 89999999999987 7899999999 99999999999998764 2
Q ss_pred cchhhh------------hhHhcCCCcEEeCCCC
Q 004184 163 LPVIIF------------KCLSKGAVDFLVKPIR 184 (770)
Q Consensus 163 IPIIvl------------~al~aGAddyL~KP~~ 184 (770)
+|||++ ++++.|+++||.||+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 677644 5688999999999994
No 66
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.22 E-value=7.8e-11 Score=114.13 Aligned_cols=109 Identities=28% Similarity=0.475 Sum_probs=97.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+..+|...+|.+..+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+|+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~i 78 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKARG--SPLPV 78 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCE
Confidence 4689999999999999999999999999999999999999876 7799999999 99999999999998653 56777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..|+.+|+.||+...+|...+..++...
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 744 5688999999999999999999998888754
No 67
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.22 E-value=5.7e-11 Score=133.71 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=92.7
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-----CCHHHHHHHHHhhcCCCCc
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-----mdGleLlr~IR~~~~~~~I 163 (770)
||||||++..+..+...| .||+|..+.++.+|++.+.. ..|||||+|+ ||+ ++|+++++.|+... +.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~--~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRR--HEPAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 689999999999999988 78999999999999999987 7899999999 995 89999999998754 667
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ .+++.||++||.||++.++|..+|..++..
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 87754 788999999999999999999999887754
No 68
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=127.33 Aligned_cols=93 Identities=35% Similarity=0.585 Sum_probs=84.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G-~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+++||||||....|..|+++|...+ ++++ ++.|+.+|++.+.+ ..||+|++|+ ||.|||++++++|... ..+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~--~~PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKK--LKPDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHh--cCCCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 3699999999999999999999998 6655 99999999999998 8899999999 9999999999999865 467
Q ss_pred chhhh------------hhHhcCCCcEEeCCCC
Q 004184 164 PVIIF------------KCLSKGAVDFLVKPIR 184 (770)
Q Consensus 164 PIIvl------------~al~aGAddyL~KP~~ 184 (770)
|||++ ++++.||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 88854 7899999999999984
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.12 E-value=5.5e-10 Score=108.66 Aligned_cols=109 Identities=18% Similarity=0.415 Sum_probs=94.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
..++||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+ |++++|+++++.|+... +.
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~~--~~ 77 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQRW--PA 77 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHC--CC
Confidence 4578999999999999999999876 57755 78999999998876 7799999999 99999999999998753 45
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+|+|++ .++..|+++||.||+...+|...|..+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 78 MNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 677654 568899999999999999999999887654
No 70
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.11 E-value=5.5e-10 Score=109.75 Aligned_cols=108 Identities=25% Similarity=0.352 Sum_probs=93.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~-~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.++||||||++..+..+...|+. .++.+. .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~~--~~~ 81 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRDG--VTA 81 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhC--CCC
Confidence 46899999999999999999975 578876 79999999998876 7899999999 99999999999998754 445
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|+|++ .++..|+++||.||++..+|..+|..++..
T Consensus 82 ~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 82 QIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 65533 678899999999999999999999988754
No 71
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.10 E-value=3e-10 Score=133.96 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=92.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..+..+|...||.|..+.++.+++..+.. ..|||||+|+ ||+++|++++++|+... +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~~--~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQTT--AVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhcC--CCCCE
Confidence 4689999999999999999999899999999999999999976 7799999999 99999999999998753 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHH--HHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKN--ELKNLWQHVWRR 198 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~e--eL~~~L~~vlrr 198 (770)
|++ .++..|+.+||.||.... .|..++..++..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 855 689999999999997643 555666655543
No 72
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.09 E-value=9.5e-10 Score=108.39 Aligned_cols=109 Identities=26% Similarity=0.421 Sum_probs=94.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+||||||++..+..+..+|... ++.++ .+.++.+++..+.. ..||+||+|+ ||+++|+++++.|+... +.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~l~~~~~~~~~~~l~~~~--~~ 80 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LS 80 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 3468999999999999999999865 57654 78999999999987 7799999999 99999999999998754 45
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+|+|++ .++..|+++||.||++..+|...|..+++.
T Consensus 81 ~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 81 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred CcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 666643 678899999999999999999999998764
No 73
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.08 E-value=4.5e-10 Score=116.04 Aligned_cols=107 Identities=10% Similarity=0.119 Sum_probs=88.1
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHH-HHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL-SKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLl-r~IR~~~~~~ 161 (770)
+...+||||||++..+..|+.+|+ .++.+. .+.++.+|+..+. .|||||+|+ ||+++|++++ +.|+... +
T Consensus 8 ~~~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~--p 80 (216)
T PRK10100 8 SHGHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKN--N 80 (216)
T ss_pred ccCceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhC--C
Confidence 345679999999999999999998 446544 7889999988753 399999999 9999999997 5677653 5
Q ss_pred Ccchhhh--------hhHh--cCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 162 NLPVIIF--------KCLS--KGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~IPIIvl--------~al~--aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.++||++ .++. .||.+||.|+.+.++|.++|+.+++.
T Consensus 81 ~~~vvvlt~~~~~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 81 NIKILLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CCcEEEEECCchhHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 6777755 3455 49999999999999999999998864
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.06 E-value=1.3e-09 Score=112.97 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=93.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdGleLlr~IR~~~~~~~I 163 (770)
..+||||||++..+..+...|+..|+.+. .+.++.++++.+.. ..|||||+|+ ||+ ++|+++++.++... .+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~---~~ 211 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTF---DV 211 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhC---CC
Confidence 45899999999999999999999999988 78999999999976 7899999999 995 89999999998753 67
Q ss_pred chhhh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl--------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|||++ .+...++.+||.||++.++|...|.+++...
T Consensus 212 pii~ls~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 212 PVIFITAFPERLLTGERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CEEEEeCCCcHHHHHHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 88765 2345678899999999999999999877653
No 75
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.95 E-value=2.5e-09 Score=109.87 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=80.9
Q ss_pred hHHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCceEEE---Ecc-CCCCCHHHHHHHHHhhcCCCCcchhhh---
Q 004184 99 TRHVVAALLRN---CGYEVTEATNGLQAWKILEDLTNHIDLVL---TEV-MPCLSGVALLSKIMSHKTRKNLPVIIF--- 168 (770)
Q Consensus 99 ~r~~L~~lLe~---~G~eV~~A~dg~EALe~L~~~~~~pDLVL---lDi-MPgmdGleLlr~IR~~~~~~~IPIIvl--- 168 (770)
.|..++.+|.. .+|.|..+.+++++++.+.. ..||+|| +|+ ||+++|++++++|++.. +.+|||++
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~ 77 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADD 77 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCC
Confidence 36788889975 36667799999999999876 6799998 677 89999999999998764 66777754
Q ss_pred -------hhH-hcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 169 -------KCL-SKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 169 -------~al-~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.++ +.||.+||.||+..++|..+|+.+++..
T Consensus 78 ~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 78 DIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred CCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 333 6999999999999999999999998754
No 76
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=98.94 E-value=4.7e-09 Score=107.57 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=86.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEc--c-CCCCCHHHHHHHHHhhcCCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTE--V-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G--~eV-~~A~dg~EALe~L~~~~~~pDLVLlD--i-MPgmdGleLlr~IR~~~~~~ 161 (770)
+.||||||++.++..++.+|+..+ +.+ ..+.++.+++..+.. ..|||||+| . ||..+|++++++|++.. +
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQH--P 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHHC--C
Confidence 358999999999999999998655 344 489999999998876 679999999 4 67779999999998764 5
Q ss_pred Ccchhhhh---------hHhcCCCc-EEeCCCCHHHHHHHHHHHHHH
Q 004184 162 NLPVIIFK---------CLSKGAVD-FLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~IPIIvl~---------al~aGAdd-yL~KP~~~eeL~~~L~~vlrr 198 (770)
.++||++. ++..|+.. |+.|+.++++|..+|+.++..
T Consensus 77 ~~~iivlt~~~~~~~~~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 77 NTLFIVFMAIANIHFDEYLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred CCeEEEEECCCchhHHHHHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 67777652 23344444 889999999999999998754
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=98.93 E-value=7.1e-09 Score=86.89 Aligned_cols=101 Identities=35% Similarity=0.635 Sum_probs=88.0
Q ss_pred EEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh-
Q 004184 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF- 168 (770)
Q Consensus 91 LIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl- 168 (770)
||+++++..+..+...|...|+.+..+.+..+++..+.. ..+|+||+|. ++..+|+++++.|+.. .+.+|+|++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAE--EKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHh--CCCCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 578999999999999999999999999999999999876 7899999999 9999999999999875 345666643
Q ss_pred ---------hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 169 ---------KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 ---------~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.++..|+.+|+.||+...+|...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 567789999999999999999888654
No 78
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-09 Score=110.08 Aligned_cols=114 Identities=23% Similarity=0.381 Sum_probs=93.1
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...++||++||++..+..+...|...||.++ ++.++.++.+.+.. ..||+||+|+ ||..|-.+-+....+ ...
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~--~~pDvVildie~p~rd~~e~~~~~~~---~~~ 77 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCER--LQPDVVILDIEMPRRDIIEALLLASE---NVA 77 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHh--cCCCEEEEecCCCCccHHHHHHHhhc---CCC
Confidence 3567999999999999999999999999877 88999999999987 8899999999 999994433333322 244
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
.|||++ .++++|+.+||+||++...|+..|.-+..++....
T Consensus 78 ~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~~ 128 (194)
T COG3707 78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEERR 128 (194)
T ss_pred CCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHHH
Confidence 566644 77999999999999999999999887777765443
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=98.71 E-value=4.9e-08 Score=116.86 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=88.5
Q ss_pred cEEEEEecChh--------hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH----HHHHHH
Q 004184 88 LKVLLVENDDS--------TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV----ALLSKI 154 (770)
Q Consensus 88 lrVLIVDDd~~--------~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGl----eLlr~I 154 (770)
|+||||||+.. .++.|...|+..||+|..+.++.+|+..+.. ...||+||+|+ ||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~-~~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS-NEAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh-cCCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 47999999996 6999999999999999999999999999964 24799999999 9999997 899999
Q ss_pred HhhcCCCCcchhhhhhHh-----------cCCCcEEeCCCCHHHH-HHHHHHHHHHhhc
Q 004184 155 MSHKTRKNLPVIIFKCLS-----------KGAVDFLVKPIRKNEL-KNLWQHVWRRCHS 201 (770)
Q Consensus 155 R~~~~~~~IPIIvl~al~-----------aGAddyL~KP~~~eeL-~~~L~~vlrr~~~ 201 (770)
|+. ...+|||++.+.. .-+++|+.+--...++ ...|....+++..
T Consensus 80 R~~--~~~iPIIlLTar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 136 (755)
T PRK15029 80 HER--QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQ 136 (755)
T ss_pred Hhh--CCCCCEEEEEcCCcccccCCHHHHHhhheEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 974 3689999885433 2356788776655554 4446666666543
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=98.67 E-value=5.1e-08 Score=105.38 Aligned_cols=80 Identities=26% Similarity=0.500 Sum_probs=69.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh----------hhHhcCCCcEEeCCC-
Q 004184 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPI- 183 (770)
Q Consensus 116 ~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl----------~al~aGAddyL~KP~- 183 (770)
.+.++.+|++.+.. ..|||||+|+ ||+++|++++++|+... +.+|||++ ++++.|++|||.||+
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 57899999999987 7899999999 99999999999998753 56788754 679999999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q 004184 184 RKNELKNLWQHVWRRC 199 (770)
Q Consensus 184 ~~eeL~~~L~~vlrr~ 199 (770)
+.++|..+|.++++..
T Consensus 78 ~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 78 DLNRLREMVFACLYPS 93 (303)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 5899999998887654
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=7.1e-08 Score=101.59 Aligned_cols=108 Identities=28% Similarity=0.501 Sum_probs=90.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+++|+++||++..++.|..++... .+++. .+.++.++++.+.. ..+|++|+|+ ||+++|+++.+.|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQG--LRPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhc--cCCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 368999999999999999999843 33433 79999999999987 6899999999 99999999999998763 333
Q ss_pred chhh--------hhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVII--------FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIv--------l~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+|++ +.+++..|.|||.||+..+.|...+....+.
T Consensus 77 ~Ivfvt~~~~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHDEYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehHHHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 3332 2667888999999999999999999987776
No 82
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.64 E-value=6.1e-08 Score=118.74 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=72.8
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHHH
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVV 103 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L 103 (770)
+-..+||++|+++|||.|.+.+..|. |+.|+|++|+ ......... .......+.+||||||++.++..+
T Consensus 637 GLGLaI~k~Lve~~GG~I~v~S~~g~----GT~F~I~LPl--~~~~~~~~~-----~~~~~l~g~~vLlvdD~~~~r~~l 705 (894)
T PRK10618 637 GLTFFLCNQLCRKLGGHLTIKSREGL----GTRYSIHLKM--LAADPEVEE-----EEEKLLDGVTVLLDITSEEVRKIV 705 (894)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCCC----cEEEEEEEEc--cCCcccccc-----cccccCCCCEEEEEeCCHHHHHHH
Confidence 33488999999999999999887765 4445555444 322111110 111234678999999999999999
Q ss_pred HHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-C
Q 004184 104 AALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M 142 (770)
Q Consensus 104 ~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-M 142 (770)
..+|+.+|++|+.+.++. .. ..|||||+|+ +
T Consensus 706 ~~~L~~~G~~v~~a~~~~------~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 706 TRQLENWGATCITPDERL------IS--QEYDIFLTDNPS 737 (894)
T ss_pred HHHHHHCCCEEEEcCccc------cC--CCCCEEEECCCC
Confidence 999999999999887632 22 6799999998 5
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.02 E-value=3.2e-05 Score=94.31 Aligned_cols=157 Identities=17% Similarity=0.101 Sum_probs=113.9
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHHH
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVV 103 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L 103 (770)
.-..+|+++++++|||.+.+.+..+. |..|+|++++......... ......+.+.+|||+||++..+..+
T Consensus 483 GLGL~i~~~i~~~~gG~i~v~s~~~~----Gt~f~i~lp~~~~~~~~~~------~~~~~~~~g~~ili~d~~~~~~~~l 552 (919)
T PRK11107 483 GLGLVITQKLVNEMGGDISFHSQPNR----GSTFWFHLPLDLNPNPIID------GLPTDCLAGKRLLYVEPNSAAAQAT 552 (919)
T ss_pred chhHHHHHHHHHHhCCEEEEEecCCC----CEEEEEEEEeccCCccccc------cCCccccCCCeEEEEeCCHHHHHHH
Confidence 34589999999999999999887765 5555555554322111110 0111234567999999999999999
Q ss_pred HHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh----------hhHh
Q 004184 104 AALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF----------KCLS 172 (770)
Q Consensus 104 ~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl----------~al~ 172 (770)
..+|+.+||.+..+.+..+ +.. ..||++|+|+ ||++.+...+............++|++ .+..
T Consensus 553 ~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 626 (919)
T PRK11107 553 LDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQ 626 (919)
T ss_pred HHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhh
Confidence 9999999999999998887 333 6799999999 998777665544433322222233322 5678
Q ss_pred cCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 173 KGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 173 aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
.|+++||.||+...+|...+....
T Consensus 627 ~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 627 DGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CCCceEECCCCCHHHHHHHHHHhh
Confidence 999999999999999998887654
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.48 E-value=0.00067 Score=49.20 Aligned_cols=54 Identities=41% Similarity=0.753 Sum_probs=48.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
++|+++++++..+..+...|...|+++..+.+..+++..+.. ..+|+|++|+ ++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKE--EKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCC
Confidence 369999999999999999999999999999999999998876 6799999997 64
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.26 E-value=0.0002 Score=81.36 Aligned_cols=83 Identities=31% Similarity=0.435 Sum_probs=69.5
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh--------hhhhHhcCCCcEEeCC
Q 004184 112 YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKP 182 (770)
Q Consensus 112 ~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII--------vl~al~aGAddyL~KP 182 (770)
++|.++..+.+|+..+.. ..+|++|+|+ ||+++|+++++++++.... +.+| -+..+++|+++||.||
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~~~--~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEPAT--VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCCcc--eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 567789999999999987 8999999999 9999999999999987532 1121 1277999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 004184 183 IRKNELKNLWQHVWRR 198 (770)
Q Consensus 183 ~~~eeL~~~L~~vlrr 198 (770)
+....+...+..+.+.
T Consensus 89 ~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 89 VNDSQLFLRAKSLVRL 104 (435)
T ss_pred CChHHHHHhhhhhccc
Confidence 9999999888777654
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.15 E-value=0.0017 Score=60.48 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=71.1
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
||||||||...+..|..+|+=.|+++..+...+- ...... ...+.+++-. .+ ...++++.|.+. .+.+|||
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~--~~~~~l~~l~~~--~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS--KLAELLKELLKW--APHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch--hHHHHHHHHHhh--CCCCCEE
Confidence 6999999999999999999999999888876443 233333 3455554444 33 456677777665 4789999
Q ss_pred hh----hh-HhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 167 IF----KC-LSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 167 vl----~a-l~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
++ .. -...+.+-|..|++..+|.++|++.
T Consensus 74 llg~~~~~~~~~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 74 LLGEHDSPEELPNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred EECCCCccccccCeeEecCCCCCHHHHHHHHHHh
Confidence 77 11 1112445588999999999998764
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.98 E-value=0.071 Score=51.82 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=84.6
Q ss_pred CCcEEEEE----ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHH
Q 004184 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPgm--dGleLlr~IR 155 (770)
+..+||+. |.+..-..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. |... .-.++++.|+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~--~~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIE--TDADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCccccCHHHHHHHHHHHH
Confidence 45678888 88888888999999999999984 4467888888887 8899999998 6532 3456788887
Q ss_pred hhcCCCCcchhh---------------hhhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 156 SHKTRKNLPVII---------------FKCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 156 ~~~~~~~IPIIv---------------l~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+... +.++|++ -++.+.|++.++...-..+++...|++.+.
T Consensus 80 ~~~~-~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 80 EAGL-GDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred hcCC-CCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 7642 3565551 156788999999988899999988887764
No 88
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=95.46 E-value=0.0075 Score=42.71 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCccchh
Q 004184 713 ADREAAVTKYRQKKTERCFRKKVRYQ 738 (770)
Q Consensus 713 ~~r~~~~~r~~~kr~~r~~~k~iry~ 738 (770)
..|.+.|.||-||||+|.+. +..|.
T Consensus 2 ~aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 2 IARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ----HHHHHHHHHH------------
T ss_pred chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 56999999999999999998 77775
No 89
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.31 E-value=0.29 Score=47.37 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=75.2
Q ss_pred ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-HHHHHHHHhhcCCCCcchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdG-leLlr~IR~~~~~~~IPIIv 167 (770)
|-+..-..++..+|+..||+|+ ...+.+++++.+.+ ..+|+|.+-. +.. +.. -++++.|++... ..++||+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e--~~adii~iSsl~~~~~~~~~~~~~~L~~~g~-~~i~viv 89 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELDKLGR-PDILVVV 89 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEcCchhhhHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 6666777889999999999998 45578899999887 7899999877 532 222 356777776542 3555552
Q ss_pred ---------hhhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 168 ---------FKCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 168 ---------l~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
....++|+++|+..--+..++...|.+.+.
T Consensus 90 GG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 90 GGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred eCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 156789999999988888888888877553
No 90
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.19 E-value=0.13 Score=48.56 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=74.0
Q ss_pred EEEE----ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHHhhcC
Q 004184 90 VLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMSHKT 159 (770)
Q Consensus 90 VLIV----DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPgm--dGleLlr~IR~~~~ 159 (770)
||+. |.+..=..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. ++.. .--++++.|++...
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~--~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQ--EDVDVIGLSSLSGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEcccchhhHHHHHHHHHHHHhcCC
Confidence 5555 67777778888999999999984 3457888888887 8899999988 6432 23467777877642
Q ss_pred CCCcchhhh---------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 160 RKNLPVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 160 ~~~IPIIvl---------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
..++|++- ++.++|++.|+..--..++....|+
T Consensus 80 -~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 80 -GDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred -CCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 35555521 4568999999999888888777654
No 91
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=95.14 E-value=0.0087 Score=61.88 Aligned_cols=42 Identities=45% Similarity=0.756 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHHhhcccCCCCccchhhhhhhhhhCCCccc
Q 004184 711 KFADREAAVTKYRQKKTERCFRKKVRYQSRKRLAEQRPRIRG 752 (770)
Q Consensus 711 ~~~~r~~~~~r~~~kr~~r~~~k~iry~~rk~~a~~r~r~~g 752 (770)
....|++.+.||+++++.|.|+++|+|..||..|+.|||++|
T Consensus 289 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 289 SSHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred ccchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 457899999999999999999999999999999999999999
No 92
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.21 E-value=0.19 Score=46.86 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=61.8
Q ss_pred ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCCCcchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPg--mdGleLlr~IR~~~~~~~IPIIv 167 (770)
|.+..-..++..+|+..||+|+. ....++.++.+.+ ..||+|.+-. +.. ....++++.||+... ..++|++
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~--~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~-~~~~i~v 86 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKE--EDADAIGLSGLLTTHMTLMKEVIEELKEAGL-DDIPVLV 86 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHcCC-CCCeEEE
Confidence 66667778899999999999974 3356788888887 8899999987 543 345678888887642 2666663
Q ss_pred h---------hhHhcCCCcEEeC
Q 004184 168 F---------KCLSKGAVDFLVK 181 (770)
Q Consensus 168 l---------~al~aGAddyL~K 181 (770)
- .+.+.|+|.|+..
T Consensus 87 GG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred ECCCCChhHHHHHHcCCeEEECC
Confidence 1 4567898777653
No 93
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=93.87 E-value=0.45 Score=44.69 Aligned_cols=96 Identities=21% Similarity=0.162 Sum_probs=68.9
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-C-CCCCHHHHHHHHHhhcCCCCcchhhhh--------
Q 004184 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-M-PCLSGVALLSKIMSHKTRKNLPVIIFK-------- 169 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-M-PgmdGleLlr~IR~~~~~~~IPIIvl~-------- 169 (770)
...|...|+..|++|+.+.+.++++..++. ...++.||+|+ - ......++++.||... ..+||+++.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~-~~~i~avvi~~d~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIES-FTDIAAVVISWDGEEEDEAQELLDKIRERN--FGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHC-TTTEEEEEEECHHHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHh-CCCeeEEEEEcccccchhHHHHHHHHHHhC--CCCCEEEEecCCCcccC
Confidence 355677788899999999999999999986 46788999997 1 1134578999999875 789998661
Q ss_pred --hHhcCCCcEEeCCCC-HHHHHHHHHHHHHH
Q 004184 170 --CLSKGAVDFLVKPIR-KNELKNLWQHVWRR 198 (770)
Q Consensus 170 --al~aGAddyL~KP~~-~eeL~~~L~~vlrr 198 (770)
.+-.-+++|+-..-+ ++.+...|..+.++
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 233356777777654 45555667666655
No 94
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.11 E-value=2.5 Score=41.27 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=75.3
Q ss_pred ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCC-HHHHHHHHHhhcCCCCcchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLS-GVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmd-GleLlr~IR~~~~~~~IPIIv 167 (770)
|-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |- .+. --++++.|++... ..++||+
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~--~~adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~~~viv 88 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE--TKADAILVSSLYGHGEIDCKGLRQKCDEAGL-EGILLYV 88 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEecccccCHHHHHHHHHHHHHCCC-CCCEEEe
Confidence 3445556788999999999998 56688999999988 8899999988 63 232 3457778877653 3444431
Q ss_pred -----h----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 168 -----F----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 168 -----l----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+ ++.+.|++..+...-.++++.+.|++.|+
T Consensus 89 GG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 89 GGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred cCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 1 36788999999988889999999888764
No 95
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=90.74 E-value=1 Score=46.28 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=67.4
Q ss_pred cEEEEE----ecChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-C-CHHHHHHHHHhh
Q 004184 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIMSH 157 (770)
Q Consensus 88 lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLlDi-MPg-m-dGleLlr~IR~~ 157 (770)
.+||+. |-+..=..++..+|+..||+|+.. ...++.++.+.+ ..||+|.+-. |.. + ...++++.||+.
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~lr~~ 160 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE--HKPDILGLSALMTTTMGGMKEVIEALKEA 160 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHHC
Confidence 467777 777777889999999999999843 357888888887 8899999998 754 2 345678888877
Q ss_pred cCCCCcchhhh-------hhHhcCCCcEEe
Q 004184 158 KTRKNLPVIIF-------KCLSKGAVDFLV 180 (770)
Q Consensus 158 ~~~~~IPIIvl-------~al~aGAddyL~ 180 (770)
.....++|++- -+-..|||.|-.
T Consensus 161 ~~~~~~~i~vGG~~~~~~~~~~~GaD~~~~ 190 (201)
T cd02070 161 GLRDKVKVMVGGAPVNQEFADEIGADGYAE 190 (201)
T ss_pred CCCcCCeEEEECCcCCHHHHHHcCCcEEEC
Confidence 54447777632 345668887764
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.65 E-value=3.5 Score=40.67 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCcEEEEE----ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEccCCC---CCHHHHHHHHH
Q 004184 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEVMPC---LSGVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDiMPg---mdGleLlr~IR 155 (770)
+..||||. |-+..-.+++.++|+..||+|+ ...+.+|+++..-+ ...|+|.+-.+-+ ...-++++.||
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~--~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE--EDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh--cCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 44566654 7788888999999999999998 67899999998866 7788888865221 22345677777
Q ss_pred hhcCCCCcchhh---------hhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 156 SHKTRKNLPVII---------FKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 156 ~~~~~~~IPIIv---------l~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+... ..|.+++ ....+.|++.|+.--....+....|...+..
T Consensus 89 e~G~-~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 89 EAGV-EDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred HhCC-cceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 7653 3444331 1456799999998777777666665555443
No 97
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=90.25 E-value=1.9 Score=52.54 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=74.6
Q ss_pred cEEEEEecCh-hh-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 88 LKVLLVENDD-ST-----RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 88 lrVLIVDDd~-~~-----r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
++||||+++- .. ...|..-|+..||+|+.+.+..+++.+++. ...++.||+|+ -. ..+++..||...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHhC--
Confidence 4688887773 22 445666778889999999999999999884 56789999997 43 255888888765
Q ss_pred CCcchhhhhh----------HhcCCCcEEeCCCC-HHHHHHHHHHHHHHhhcC
Q 004184 161 KNLPVIIFKC----------LSKGAVDFLVKPIR-KNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 161 ~~IPIIvl~a----------l~aGAddyL~KP~~-~eeL~~~L~~vlrr~~~~ 202 (770)
..+||+++.. .-.-++.|+..-.. .+.+...|.+.++++...
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~~ 127 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLDN 127 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHHHHh
Confidence 6899997621 11224555554333 444555677777766543
No 98
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.29 E-value=2.2 Score=51.99 Aligned_cols=109 Identities=14% Similarity=0.190 Sum_probs=73.4
Q ss_pred cEEEEEecCh-h-----hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 88 LKVLLVENDD-S-----TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 88 lrVLIVDDd~-~-----~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
|+||||+++. . -...|..-|++.||+|+.+.+..+++.+++. ...++.||+|+ -- ..+++..||...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecchh---hHHHHHHHHHhC--
Confidence 4678887662 1 1445667788899999999999999999884 56789999997 31 255888888764
Q ss_pred CCcchhhhhh----------HhcCCCcEEeCCC-CHHHHHHHHHHHHHHhhcC
Q 004184 161 KNLPVIIFKC----------LSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 161 ~~IPIIvl~a----------l~aGAddyL~KP~-~~eeL~~~L~~vlrr~~~~ 202 (770)
..+||+++.. .-.-+++|+..-- +.+.+...|.+.++++...
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y~~~ 127 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYIDT 127 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHHHHh
Confidence 6899997621 1112445554333 3455555577777766443
No 99
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=89.10 E-value=0.76 Score=43.93 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHH--HHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALL--SKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLl--r~IR~~~~~~ 161 (770)
+.+.++++||.+.........+|...+.+|+.-.... .+-. ..||++|+.+ .+-..-+.+. +..+... ..
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~-mt 81 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALS-MT 81 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccCh--hhhceeeecccccccCCchHHHHHHHHHHh-hh
Confidence 3567899999999999999999999999998644322 2322 5799999998 6644433221 2222221 12
Q ss_pred Ccchhhh---------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 162 NLPVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 162 ~IPIIvl---------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
+..|+.+ +....|+.++|.||++...|+..+-
T Consensus 82 d~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptll 122 (140)
T COG4999 82 DFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTLL 122 (140)
T ss_pred cceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHHHHH
Confidence 3333322 5578899999999999999887543
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=88.32 E-value=3.9 Score=39.59 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=72.0
Q ss_pred ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHhhcCCCCcchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdG-leLlr~IR~~~~~~~IPIIv 167 (770)
|-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |. .+.. -++++.|++... ..++|++
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~--~~adiVglS~L~t~~~~~~~~~~~~l~~~gl-~~v~viv 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE--TDADAILVSSLYGHGEIDCKGLREKCDEAGL-KDILLYV 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCCHHHHHHHHHHHHHCCC-CCCeEEE
Confidence 3344556788899999999998 55678899998887 7899999988 64 3433 467788887654 3566661
Q ss_pred -----h----------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 168 -----F----------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 168 -----l----------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
+ ++.++|++..+...-.++++...|+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 1 3677899999988888888877664
No 101
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=87.82 E-value=1.1 Score=46.25 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=53.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCH--HHHHHHHHhhcCCCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSG--VALLSKIMSHKTRKN 162 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi---MPgmdG--leLlr~IR~~~~~~~ 162 (770)
++|||||....+---|..+|++.|++|.+..+...-++.++. ..||+|++-- -|...| +++++++ ..+
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~-----~~~ 74 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF-----AGR 74 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh-----cCC
Confidence 589999999999999999999999998877766444445555 6789999976 354333 3444444 256
Q ss_pred cchh
Q 004184 163 LPVI 166 (770)
Q Consensus 163 IPII 166 (770)
+||+
T Consensus 75 ~PiL 78 (191)
T COG0512 75 IPIL 78 (191)
T ss_pred CCEE
Confidence 8888
No 102
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.47 E-value=2.2 Score=43.86 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred EEEEE----ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-HHHHHHHHhhc
Q 004184 89 KVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-VALLSKIMSHK 158 (770)
Q Consensus 89 rVLIV----DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdG-leLlr~IR~~~ 158 (770)
+||+. |.+..=..++..+|+..||+|+. -...++.++.+.+ ..||+|.+-. |.. +.. .++++.||+..
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~--~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKK--EKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 45544 45666677888899999999983 3456888888887 8899999998 643 333 46778888775
Q ss_pred CCCCcchhhh-------hhHhcCCCcEEe
Q 004184 159 TRKNLPVIIF-------KCLSKGAVDFLV 180 (770)
Q Consensus 159 ~~~~IPIIvl-------~al~aGAddyL~ 180 (770)
....++|++= -+...|||.|-.
T Consensus 164 ~~~~v~i~vGG~~~~~~~~~~~gad~~~~ 192 (197)
T TIGR02370 164 YRDSVKFMVGGAPVTQDWADKIGADVYGE 192 (197)
T ss_pred CCCCCEEEEEChhcCHHHHHHhCCcEEeC
Confidence 5556777631 345678887754
No 103
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=85.91 E-value=3.7 Score=37.81 Aligned_cols=68 Identities=25% Similarity=0.239 Sum_probs=49.2
Q ss_pred cChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CC-CC-CHHHHHHHHHhhcCCCCcchh
Q 004184 95 NDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MP-CL-SGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 95 Dd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLlDi-MP-gm-dGleLlr~IR~~~~~~~IPII 166 (770)
-.+.-...+..+|++.||+|... .+.++.++.+.+ ..||+|.+.. +. .. ...++++.+|+. .++++||
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~--~~pd~V~iS~~~~~~~~~~~~l~~~~k~~--~p~~~iv 85 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRA--ERPDVVGISVSMTPNLPEAKRLARAIKER--NPNIPIV 85 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHH--TTCSEEEEEESSSTHHHHHHHHHHHHHTT--CTTSEEE
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhc--CCCcEEEEEccCcCcHHHHHHHHHHHHhc--CCCCEEE
Confidence 34566788999999999999866 345777788887 7899999987 53 32 345677777654 3677776
No 104
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=82.16 E-value=8.7 Score=47.14 Aligned_cols=108 Identities=13% Similarity=0.126 Sum_probs=77.3
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCC--CHHHHHHHHHh
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCL--SGVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPgm--dGleLlr~IR~ 156 (770)
..+|+|. |.+..-...+..+|+..||+|+. ..+.+++++.+.+ ..+|+|++-. +... ..-++++.|++
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~--~~a~ivvlcs~d~~~~e~~~~l~~~Lk~ 659 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVE--NDVHVVGVSSLAAGHKTLVPALIEALKK 659 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHH--cCCCEEEEeccchhhHHHHHHHHHHHHh
Confidence 3456554 44555667788899999999973 3568889898887 7889888865 5332 34578888887
Q ss_pred hcCCCCcchhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 157 ~~~~~~IPIIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.. ..+++||+- .+.+.|+++||..-.+..+++..+.+.+.
T Consensus 660 ~G-~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 660 LG-REDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred cC-CCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 65 334655521 34678999999999988888877777664
No 105
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=82.11 E-value=2.3 Score=46.54 Aligned_cols=76 Identities=21% Similarity=0.172 Sum_probs=48.1
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhhhHhcCCCcEEe
Q 004184 111 GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFKCLSKGAVDFLV 180 (770)
Q Consensus 111 G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~al~aGAddyL~ 180 (770)
|.+++.+.+..++-.... .-.+||+|. +- -.+++.+ .+..+.+.+| ...++..|+.+||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~----~~~~~~~--~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~ 70 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMA----EACAAAG--LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAV 70 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhh----hHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHHhChhheee
Confidence 456677777666544443 246889986 41 1122221 1222333322 23789999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 004184 181 KPIRKNELKNLWQHVW 196 (770)
Q Consensus 181 KP~~~eeL~~~L~~vl 196 (770)
+|++..+|..+|.++.
T Consensus 71 ~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 71 LPEAEGWLVELLADLD 86 (322)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 9999999999998763
No 106
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=81.69 E-value=17 Score=37.10 Aligned_cols=58 Identities=17% Similarity=0.247 Sum_probs=48.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
--+++|+.+++..++.+..+++.|| |.|..+.+.+++++.++..+..+-|+..+. +.+
T Consensus 31 a~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 31 ADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD 91 (176)
T ss_pred CceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc
Confidence 3478999999999999999999996 778899999999999975345677888887 644
No 107
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=81.14 E-value=6.2 Score=41.23 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=66.3
Q ss_pred cEEEEE----ecChhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHhh
Q 004184 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSH 157 (770)
Q Consensus 88 lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR~~ 157 (770)
.+|||. |.+..=..++..+|+..||+|+... ..++.++.+.+ ..+|+|.+-. |+. +. -.++++.|++.
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~--~~~~~V~lS~~~~~~~~~~~~~i~~L~~~ 166 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKE--HKADIIGLSGLLVPSLDEMVEVAEEMNRR 166 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEccchhccHHHHHHHHHHHHhc
Confidence 467777 7888888889999999999998443 57888888887 8899999998 753 33 34678888876
Q ss_pred cCCCCcchhhh-----hhH--------hcCCCcEEeCC
Q 004184 158 KTRKNLPVIIF-----KCL--------SKGAVDFLVKP 182 (770)
Q Consensus 158 ~~~~~IPIIvl-----~al--------~aGAddyL~KP 182 (770)
. .+++|++- +.+ ..|||.|-.-.
T Consensus 167 ~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 167 G--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred C--CCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 4 47777632 112 25898876543
No 108
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=78.77 E-value=5.2 Score=40.76 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=49.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-HHHHHHHHhh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSH 157 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-leLlr~IR~~ 157 (770)
-+|++||-++.....|+.-|+.++.. .+...+...++..+......||||++|- -..... .+++..|.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~ 140 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAEN 140 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHC
Confidence 47999999999999999999988743 3467788888877743347899999997 433333 5677777644
No 109
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.56 E-value=18 Score=32.82 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=46.0
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEE--CCH-HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEA--TNG-LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A--~dg-~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
+||||-..+.....++.+|++.|+++... ..+ ......|...-...|+||+=. .-. -.+...+++......+|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs---H~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS---HNAMWKVKKAAKKYGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC---hHHHHHHHHHHHHcCCc
Confidence 48999998888899999999999998877 222 222112222124568887654 322 23333443332234678
Q ss_pred hhh
Q 004184 165 VII 167 (770)
Q Consensus 165 IIv 167 (770)
+++
T Consensus 78 ~~~ 80 (97)
T PF10087_consen 78 IIY 80 (97)
T ss_pred EEE
Confidence 874
No 110
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=74.80 E-value=4.1 Score=48.71 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhhcCCc-------cchhhHHHHHHHHhCCccccCCccCccccccccceeeecc
Q 004184 7 ADKRLQELNHCLQAGSK-------RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (770)
Q Consensus 7 g~~r~~~L~~~l~~~~~-------~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~l 63 (770)
+++...+|+..|++... .-..+|+++|++..+|.|++++++|+ |.+|.|+++.
T Consensus 682 ~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gE----gsTF~f~lp~ 741 (750)
T COG4251 682 DPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGE----GSTFYFTLPV 741 (750)
T ss_pred CHHHHHHHHHHHHhcCchhhhcCCCccHHHHHHHHHHhCceEEEeecCCC----ceeEEEEeec
Confidence 44555577777654444 44489999999999999999999887 5656666543
No 111
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=73.12 E-value=4.6 Score=40.94 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=47.9
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCcchh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~~IPII 166 (770)
|||||.....-..|..+|+..|++|..+.+..--++.+.. ..||.||+-- | |..++. .+..|+.. ...+||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~~~iilsgGP~~~~~~~~-~~~~i~~~--~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQ--LAPSHLVISPGPCTPNEAGI-SLAVIRHF--ADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCeEEEcCCCCChHhCCC-chHHHHHh--cCCCCEE
Confidence 8999999999999999999999998877755322344544 4678777754 3 333332 22333322 2468888
No 112
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=72.27 E-value=16 Score=39.36 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=67.6
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
.|-+.=.++.....+..+|...-|.+..+.++++.++.++.....+|++|+.. +..-..++..|.+.. --+|+|++
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~--~~~~~~~~~~L~e~g--~LLPaVil 77 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQ--SPLLPPLFNQLYEQG--ILLPAVIL 77 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEET--TSTTHHHHHHHHHCT------EEEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEec--CCCcHHHHHHHHHcC--ccccEEEE
Confidence 35555667788889999999888999999999999999987667899999987 223466888888765 45677776
Q ss_pred hhH-------hcCCC-----cEEeCCCCHHHHHHHHHHHHHHh
Q 004184 169 KCL-------SKGAV-----DFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 169 ~al-------~aGAd-----dyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
..- ..|-. ..-...-..++|-..|.+++.++
T Consensus 78 ~~~~s~~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 78 GSSESASTTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp S---S--TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred ecCcccccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 321 12222 23344445566666666666554
No 113
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=71.91 E-value=13 Score=34.21 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=50.6
Q ss_pred ecChhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCC-Ccchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRK-NLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-MPg-mdGleLlr~IR~~~~~~-~IPIIv 167 (770)
|..+.-...+..+|+..||++.... ..++.++.+.. ..||+|.+-. +.. ...+.++..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5666777888999999999988543 56677777776 7899999998 533 34566677776654 3 677663
No 114
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=70.45 E-value=5.9 Score=40.67 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=39.9
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
|||||....+-..|..+|++.|+++.++...+..++.+.. ..||.||+--
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsg 51 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISP 51 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECC
Confidence 8999999999999999999999998877765444455544 5688888754
No 115
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=70.33 E-value=33 Score=34.77 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC--------CHHHHHHHHHhhcCCCCcchhhh---------hh
Q 004184 110 CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL--------SGVALLSKIMSHKTRKNLPVIIF---------KC 170 (770)
Q Consensus 110 ~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgm--------dGleLlr~IR~~~~~~~IPIIvl---------~a 170 (770)
.+..+- .+.+..++++.+. ..+|+|.+.. .|.. .|++.+++|++.. +.+||++. .+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI~~~~i~~~ 177 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGITPENAPEV 177 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCcCHHHHHHH
Confidence 344433 5667778777664 4689999876 6543 3588999987653 34888743 67
Q ss_pred HhcCCCcEEe-----CCCCHHHHHHHHHHHH
Q 004184 171 LSKGAVDFLV-----KPIRKNELKNLWQHVW 196 (770)
Q Consensus 171 l~aGAddyL~-----KP~~~eeL~~~L~~vl 196 (770)
+..|++.+.. +.-++.+....+...+
T Consensus 178 ~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~ 208 (212)
T PRK00043 178 LEAGADGVAVVSAITGAEDPEAAARALLAAF 208 (212)
T ss_pred HHcCCCEEEEeHHhhcCCCHHHHHHHHHHHH
Confidence 8889998764 4445544444444433
No 116
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=69.32 E-value=35 Score=36.74 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCcEEEEEecChhhHHHHHHHH------HhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALL------RNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALL 151 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lL------e~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLl 151 (770)
.-+|+=|+.|+.....-+.+.+ -+.||.|. ++.|...|-++. + ..+++| +=+ -| +..-.+++
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~--~G~~~v-mPlg~pIGsg~Gi~~~~~I 167 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-D--AGCAAV-MPLGSPIGSGQGLLNPYNL 167 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H--cCCCEe-CCCCcCCCCCCCCCCHHHH
Confidence 4467777776654433333322 23499887 555566665544 4 456666 211 11 22226888
Q ss_pred HHHHhhcCCCCcchh----------hhhhHhcCCCcEE-----eCCCCHHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVI----------IFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 152 r~IR~~~~~~~IPII----------vl~al~aGAddyL-----~KP~~~eeL~~~L~~vlrr 198 (770)
+.|++. ..+||| +.++++.|++.+| .|.-++..+..++...+..
T Consensus 168 ~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 168 RIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 888875 368888 3488999999985 4555677777777777654
No 117
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=68.81 E-value=45 Score=30.39 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=54.2
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFK 169 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~ 169 (770)
+-|+|.++..++.+ .+.+|+. .+.+.+++++ . ..+|+|++-. |...- .-++..
T Consensus 29 ~~v~d~~~~~~~~~---~~~~~~~--~~~~~~~ll~---~--~~~D~V~I~t-p~~~h----------------~~~~~~ 81 (120)
T PF01408_consen 29 VAVCDPDPERAEAF---AEKYGIP--VYTDLEELLA---D--EDVDAVIIAT-PPSSH----------------AEIAKK 81 (120)
T ss_dssp EEEECSSHHHHHHH---HHHTTSE--EESSHHHHHH---H--TTESEEEEES-SGGGH----------------HHHHHH
T ss_pred EEEEeCCHHHHHHH---HHHhccc--chhHHHHHHH---h--hcCCEEEEec-CCcch----------------HHHHHH
Confidence 45778877655443 5666777 7777665543 3 4689999875 11111 123457
Q ss_pred hHhcCCCcEEeCCC--CHHHHHHHHHHHHHH
Q 004184 170 CLSKGAVDFLVKPI--RKNELKNLWQHVWRR 198 (770)
Q Consensus 170 al~aGAddyL~KP~--~~eeL~~~L~~vlrr 198 (770)
+++.|..=|+-||+ +.+++.++++.+-+.
T Consensus 82 ~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 82 ALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 77888888999999 788888877665443
No 118
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=68.79 E-value=24 Score=33.09 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCcchhhh-----
Q 004184 98 STRHVVAALLRNCGYEVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIIF----- 168 (770)
Q Consensus 98 ~~r~~L~~lLe~~G~eV~~A--~dg~EALe~L~~~~~~pDLVLlDi-MPgm-dGleLlr~IR~~~~~~~IPIIvl----- 168 (770)
.-...+..+|++.|+++... ...++.++.+.. ...||+|.+-+ .... ...++++.||+.. ++++||+-
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKE-LLKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHH-hcCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchh
Confidence 34567888999999876633 345556666643 15799999988 4433 4577889998864 56777732
Q ss_pred ----hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 169 ----KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 ----~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
..+..-..||+..---...|.+.+..+
T Consensus 80 ~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l 110 (127)
T cd02068 80 FFPEEILEEPGVDFVVIGEGEETFLKLLEEL 110 (127)
T ss_pred hCHHHHhcCCCCCEEEECCcHHHHHHHHHHH
Confidence 223444567777754444555555544
No 119
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=68.70 E-value=7.1 Score=39.68 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=48.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCcchh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~~IPII 166 (770)
|||||....+-..|..+|++.|+++..+.+.+..++.+.. ..||.||+-- + |..++. ....++.. ...+||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~-~~~~~~~~--~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGI-SLDVIRHY--AGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCc-cHHHHHHh--cCCCCEE
Confidence 8999999999999999999999988876665323444444 4688888764 3 433332 22333321 2568887
No 120
>PRK09303 adaptive-response sensory kinase; Validated
Probab=68.69 E-value=4.1 Score=45.50 Aligned_cols=55 Identities=13% Similarity=-0.050 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHhh---hc-------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeec
Q 004184 3 VDGKADKRLQELNHCL---QA-------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTAS 62 (770)
Q Consensus 3 ~~g~g~~r~~~L~~~l---~~-------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~ 62 (770)
|+|.|+.. ..+.++| .. .+..-..+|++++++.+||.|.+.+..+. |..|+|++|
T Consensus 312 D~G~GI~~-~~~~~iF~pf~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~----Gt~f~i~lP 376 (380)
T PRK09303 312 DTGPGIPE-EEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVRVHYGQIWVDSEPGQ----GSCFHFTLP 376 (380)
T ss_pred EcCCCCCH-HHHHHHccCceeCCCCCCCCcccccHHHHHHHHHHcCCEEEEEecCCC----ccEEEEEEe
Confidence 67777652 2444444 21 12334589999999999999999777664 555555554
No 121
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=66.45 E-value=6.6 Score=44.16 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=37.8
Q ss_pred CCCchhHH--HHHHHHHhhh---------cCCccchhhHHHHHHHHhCCccccCCccCccccccccceeeecc
Q 004184 2 NVDGKADK--RLQELNHCLQ---------AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (770)
Q Consensus 2 ~~~g~g~~--r~~~L~~~l~---------~~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~l 63 (770)
.+.|.|+- ....++.-|. ..++.-..+|++++++..||.|+.++..|+ |..|.|++|-
T Consensus 380 ~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gk----gtt~~ftLPy 448 (459)
T COG5002 380 SDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGK----GTTFSFTLPY 448 (459)
T ss_pred ccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEEecccCC----ceEEEEEecc
Confidence 35566543 4445555552 223334489999999999999999888666 5555555543
No 122
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=66.44 E-value=20 Score=37.24 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHHHHH
Q 004184 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAA 105 (770)
Q Consensus 26 ~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~ 105 (770)
..++...|+++.+-...+ ++|. +.|.. ++.+....+ ...+|.-||-++...+..+.
T Consensus 33 ~g~lL~~l~~~~~~k~vL--EIGt----~~GyS-al~la~~l~-----------------~~g~i~tiE~~~~~~~~A~~ 88 (205)
T PF01596_consen 33 TGQLLQMLVRLTRPKRVL--EIGT----FTGYS-ALWLAEALP-----------------EDGKITTIEIDPERAEIARE 88 (205)
T ss_dssp HHHHHHHHHHHHT-SEEE--EEST----TTSHH-HHHHHHTST-----------------TTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEE--Eecc----ccccH-HHHHHHhhc-----------------ccceEEEecCcHHHHHHHHH
Confidence 346667777777777666 5664 23321 111111110 12489999999999999999
Q ss_pred HHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc
Q 004184 106 LLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV 141 (770)
Q Consensus 106 lLe~~G~--eV~-~A~dg~EALe~L~~~~--~~pDLVLlDi 141 (770)
.++..|+ .|. ...++.+.|..+.... ..||+||+|.
T Consensus 89 ~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 89 NFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred HHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcc
Confidence 9999886 354 6788888888776422 3699999998
No 123
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=66.34 E-value=13 Score=37.82 Aligned_cols=72 Identities=24% Similarity=0.295 Sum_probs=46.5
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCcchh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~~IPII 166 (770)
|||||.....-..+.++|+..|+++....+-...++.+.. ..||.||+-- + |..++.+ ...|+.. ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~-~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGIS-LEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchh-HHHHHHh--ccCCCEE
Confidence 8999999999999999999999998866643322344444 4688666632 2 3222322 3344332 2468888
No 124
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.28 E-value=29 Score=38.12 Aligned_cols=103 Identities=20% Similarity=0.277 Sum_probs=60.9
Q ss_pred cEEEEEe--cChhh---HHHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEccCCCCCHHH
Q 004184 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------------LEDLTNHIDLVLTEVMPCLSGVA 149 (770)
Q Consensus 88 lrVLIVD--Dd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~-------------L~~~~~~pDLVLlDiMPgmdGle 149 (770)
|+|.||- +.+.. ...+..+|+..|+++.......+.+.. .......+|+||+ -|.||.
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---lGGDGT- 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS---IGGDGT- 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE---ECCcHH-
Confidence 3566662 22333 345566677889988865543332210 0111123566665 377883
Q ss_pred HHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 150 LLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 150 Llr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+|+..|... ...+||+-+ ..|-.+||. .+.++++..+|.++++..
T Consensus 77 ~L~aa~~~~-~~~~PilGI---N~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 FLRTATYVG-NSNIPILGI---NTGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHHhc-CCCCCEEEE---ecCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 455555432 247888854 347777876 588899999999998653
No 125
>PRK00208 thiG thiazole synthase; Reviewed
Probab=66.21 E-value=40 Score=36.31 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCcEEEEEecChhhHHHHHHHH------HhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALL------RNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALL 151 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lL------e~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLl 151 (770)
.-+|+=|+.|+.....-+...+ -+.||.|. ++.|...|-++. + ..+++| +=+ -| +..-.+++
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~-~--~G~~~v-mPlg~pIGsg~gi~~~~~i 167 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-E--AGCAAV-MPLGAPIGSGLGLLNPYNL 167 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H--cCCCEe-CCCCcCCCCCCCCCCHHHH
Confidence 4467777776654333332222 24499987 555666665544 4 456666 221 11 12126788
Q ss_pred HHHHhhcCCCCcchh----------hhhhHhcCCCcEE-----eCCCCHHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVI----------IFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 152 r~IR~~~~~~~IPII----------vl~al~aGAddyL-----~KP~~~eeL~~~L~~vlrr 198 (770)
+.|++. ..+||| +.++++.|++++| .|--++..+..++...+..
T Consensus 168 ~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 168 RIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 888875 368888 3488999999985 4655677777777777654
No 126
>PRK05637 anthranilate synthase component II; Provisional
Probab=66.12 E-value=16 Score=38.07 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=38.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlD 140 (770)
.+|||||....+-..|..+|+..|+.+.++..... ++.+.. ..||.||+-
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIls 51 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLS 51 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEe
Confidence 47999999999999999999999998887665332 333433 468888773
No 127
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=65.95 E-value=35 Score=34.83 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=47.3
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~ 157 (770)
+|..||.++...+.++.-++..++. +. ...+..+++..+......+|+|++|- .....-.+++..|...
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~ 146 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENN 146 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHC
Confidence 6999999999999999998887763 33 56666666654432113489999998 6443334566666543
No 128
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.72 E-value=22 Score=38.67 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=59.6
Q ss_pred cEEEEEec-----ChhhHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004184 88 LKVLLVEN-----DDSTRHVVAALLRNCGYEVTEATNGLQAWK--------ILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (770)
Q Consensus 88 lrVLIVDD-----d~~~r~~L~~lLe~~G~eV~~A~dg~EALe--------~L~~~~~~pDLVLlDiMPgmdGleLlr~I 154 (770)
|||.||-. .......+..+|+..|+++.......+.+. .+.. ..+|+||+ -|.||. +++.+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~---iGGDGT-lL~a~ 74 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIA---IGGDGT-ILRIE 74 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEE---EeCcHH-HHHHH
Confidence 46777622 223445566677788998886543222211 1111 24676665 367773 45555
Q ss_pred HhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 155 R~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+ .. ...+||+.+. .|-.+||. .+.++++..+|.++++.
T Consensus 75 ~-~~-~~~~pi~gIn---~G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 75 H-KT-KKDIPILGIN---MGTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred H-hc-CCCCeEEEEe---CCCCCccc-cCCHHHHHHHHHHHHcC
Confidence 5 32 3578888654 36667776 67889999999888864
No 129
>PLN02335 anthranilate synthase
Probab=64.44 E-value=12 Score=39.12 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~~ 162 (770)
...+|||||-...+-..|.++|+..|+++.++......++.+.. ..||.||+-- + |...+ ..++.++.. ...
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~--~~~ 91 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLEL--GPL 91 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHh--CCC
Confidence 44589999987788888999999999988866543211333333 4577777754 4 43223 234555443 356
Q ss_pred cchh
Q 004184 163 LPVI 166 (770)
Q Consensus 163 IPII 166 (770)
+||+
T Consensus 92 ~PiL 95 (222)
T PLN02335 92 VPLF 95 (222)
T ss_pred CCEE
Confidence 8888
No 130
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=63.36 E-value=35 Score=35.13 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=55.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHhc-CCCceEEEEcc--CCCCCHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--GY-------------EVTEATNGLQAWKILEDL-TNHIDLVLTEV--MPCLSGVA 149 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G~-------------eV~~A~dg~EALe~L~~~-~~~pDLVLlDi--MPgmdGle 149 (770)
-+..||..-+..++++.++|.-| |+ .|..+.+.++|++.+++. +..|-+|.+|. -|+.-.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 47899999999999999999855 32 267999999999999753 56788999998 46666666
Q ss_pred HHHHHHhhcCCCCcchhhh-------hhHhcCCCcEEeCCCCH
Q 004184 150 LLSKIMSHKTRKNLPVIIF-------KCLSKGAVDFLVKPIRK 185 (770)
Q Consensus 150 Llr~IR~~~~~~~IPIIvl-------~al~aGAddyL~KP~~~ 185 (770)
-++++... .+-|++++ .---....||++.|+.-
T Consensus 123 ~lr~~l~~---~~~P~LllFGTGwGL~~ev~~~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEE---EDRPVLLLFGTGWGLAPEVMEQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHHHTT-SEEB--TTT
T ss_pred HHHHHHhc---cCCeEEEEecCCCCCCHHHHHhcCeeEccccc
Confidence 55555422 23466644 11123456799999853
No 131
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=61.46 E-value=59 Score=37.32 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=61.1
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.++++||-|.+. ++.|+.+.+.......-.-..++..+++.. .|++|+=...+.-|+-+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~~E~~g~~vlEAmA-----~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSESETLGFVVLEAMA-----SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCcccccCcHHHHHHH-----cCCCEE
Confidence 456777766543 344555544332222222334566666654 5666653322333555666663 357888
Q ss_pred hh------hhHhc---CCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 167 IF------KCLSK---GAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 vl------~al~a---GAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+. +.+.. |-.+||..|-+.++|.+.|..++.
T Consensus 360 ~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 43 44555 888999999999999999988874
No 132
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=61.12 E-value=67 Score=30.75 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCH--HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNG--LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg--~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~ 161 (770)
..++++|+.+.... ..+..+.+..++ .+...... .+..+++.. .|++|+=..-+.-|..+++.+. .
T Consensus 46 ~~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~e~~~~~~~Ea~~-----~ 115 (172)
T PF00534_consen 46 PNYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRNEGFGLSLLEAMA-----C 115 (172)
T ss_dssp TTEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSSBSS-HHHHHHHH-----T
T ss_pred CCeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccccccccccccccc-----c
Confidence 45678888744443 345566555544 34444433 467777765 6777775522455667777774 3
Q ss_pred Ccchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 162 NLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 162 ~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+|+|+. +.+..+..+|+..+.+.++|...|..++...
T Consensus 116 g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 116 GCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp T-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred ccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 5677743 5566788999999999999999999998764
No 133
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=60.95 E-value=82 Score=35.16 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=51.9
Q ss_pred HHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh------hhHh
Q 004184 102 VVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF------KCLS 172 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~A~--dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl------~al~ 172 (770)
.+..+....+-.|.... +.++..+++.. .|++++=. ..+.-|+-+++.+. ..+|||+. +.+.
T Consensus 247 ~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma-----~G~PVI~s~~gg~~Eiv~ 317 (380)
T PRK15484 247 KVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA-----AGKPVLASTKGGITEFVL 317 (380)
T ss_pred HHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH-----cCCCEEEeCCCCcHhhcc
Confidence 34444444444444332 24455555543 46666543 33333455666653 35788743 3456
Q ss_pred cCCCcE-EeCCCCHHHHHHHHHHHHH
Q 004184 173 KGAVDF-LVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 173 aGAddy-L~KP~~~eeL~~~L~~vlr 197 (770)
.|..+| +..|.+.++|.+.|.+++.
T Consensus 318 ~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 318 EGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 678888 5679999999999998875
No 134
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=58.79 E-value=62 Score=35.25 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPI 165 (770)
++++||.+.+. +..+..+++..+.. +.......+..+++.. .|++|+=...+.-|.-+++.+. ..+||
T Consensus 230 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~~Eg~~~~~lEAma-----~G~Pv 299 (374)
T TIGR03088 230 LRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSLAEGISNTILEAMA-----SGLPV 299 (374)
T ss_pred eEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccccccCchHHHHHHH-----cCCCE
Confidence 56666665443 34566666655542 3333333444555543 4665542222333566777764 35688
Q ss_pred hhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 166 IIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 166 Ivl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|+. +.+..|..+++..|-+.++|...|..++.
T Consensus 300 v~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 300 IATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred EEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 753 44566788999999999999999998875
No 135
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=58.69 E-value=25 Score=38.88 Aligned_cols=62 Identities=26% Similarity=0.401 Sum_probs=49.5
Q ss_pred EEEEEecChhhHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHH
Q 004184 89 KVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLS 152 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~--G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr 152 (770)
.|+++|-|..+.+.=+.+|... || +|. ...||...++.+.+ ..+|+||+|. -|.+.+..+..
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHHH
Confidence 5899999999999888888754 66 343 56699999999876 8899999999 88877765543
No 136
>PRK04148 hypothetical protein; Provisional
Probab=58.65 E-value=16 Score=35.76 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=62.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc-c
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL-P 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I-P 164 (770)
..+||+|-== ....+...|.+.|++|+.+.--.+|++.++. ...+++..|+ -|.++-++-+..|-+..+.+.+ |
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~ 92 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQP 92 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHH
Confidence 4678888766 3334566777889999999999999998887 6678999999 8887655544444333222221 1
Q ss_pred hhhhhhHhcCCCcEEeCCCCHHH
Q 004184 165 VIIFKCLSKGAVDFLVKPIRKNE 187 (770)
Q Consensus 165 IIvl~al~aGAddyL~KP~~~ee 187 (770)
-|+--|.+.|| +++.+|+.-+.
T Consensus 93 ~~~~la~~~~~-~~~i~~l~~e~ 114 (134)
T PRK04148 93 FILELAKKINV-PLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHcCC-CEEEEcCCCCC
Confidence 22223344455 46667776554
No 137
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=58.22 E-value=62 Score=33.06 Aligned_cols=74 Identities=16% Similarity=0.286 Sum_probs=55.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc--CCC-CCHHHHHHHHHhhcC
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV--MPC-LSGVALLSKIMSHKT 159 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~-------dg~EALe~L~~~~~~pDLVLlDi--MPg-mdGleLlr~IR~~~~ 159 (770)
|||-|-|...++.+...-++.|.+++... +|+|.++++.+....|=||++|- ..+ ..|-+.++.+..+
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h-- 80 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANH-- 80 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcC--
Confidence 56667777778888888888899998554 78999999998666666777775 654 4677888888765
Q ss_pred CCCcchh
Q 004184 160 RKNLPVI 166 (770)
Q Consensus 160 ~~~IPII 166 (770)
+.|-|+
T Consensus 81 -~~IeVL 86 (180)
T PF14097_consen 81 -PDIEVL 86 (180)
T ss_pred -CCceEE
Confidence 455555
No 138
>PRK10604 sensor protein RstB; Provisional
Probab=58.16 E-value=10 Score=42.95 Aligned_cols=35 Identities=17% Similarity=-0.033 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 26 ~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
..+|++++++.+||.+.+.+..+ .|++|++.+|..
T Consensus 390 GL~ivk~i~~~~gG~i~v~s~~~------~G~~f~i~lP~~ 424 (433)
T PRK10604 390 GLAIVHSIALAMGGSVNCDESEL------GGARFSFSWPVW 424 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEecCC------CeeEEEEEEeCC
Confidence 48999999999999988866544 445555555543
No 139
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=56.97 E-value=34 Score=35.36 Aligned_cols=56 Identities=25% Similarity=0.380 Sum_probs=41.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
..++++||-+......|++-++.+++ ++. ...+...+|..+.. ...||||++|- ..
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVflDPPy~ 125 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVFLDPPYA 125 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEEeCCCCc
Confidence 45899999999999999999988873 333 45555566666654 12499999997 54
No 140
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.77 E-value=73 Score=37.41 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=63.4
Q ss_pred ChhhHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCcchh
Q 004184 96 DDSTRHVVAALLRNCG-YEVTEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 96 d~~~r~~L~~lLe~~G-~eV~~A~------dg~EALe~L~~~~~~pDLVLlDi-MPgm-dGleLlr~IR~~~~~~~IPII 166 (770)
.|.-...|...|+..| ++|.... +.++..+.+.+ ..||||.+-. .+.. ...++++.+|+.. +.++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~--~~pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRA--HCPDLVLITAITPAIYIACETLKFARERL--PNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHh--cCcCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEE
Confidence 4666788899999999 5776543 33445566665 7899999977 4543 3457788888753 677777
Q ss_pred hh---------hhHh-cCCCcEEeCCCCHHHHHHHHHHH
Q 004184 167 IF---------KCLS-KGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 167 vl---------~al~-aGAddyL~KP~~~eeL~~~L~~v 195 (770)
+= +++. ....||+..--....|.+++..+
T Consensus 97 ~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l 135 (497)
T TIGR02026 97 LGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAAL 135 (497)
T ss_pred EcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHH
Confidence 31 3343 34567888766666666666554
No 141
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=56.53 E-value=64 Score=34.72 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hh
Q 004184 101 HVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IF 168 (770)
Q Consensus 101 ~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl 168 (770)
..|+..|..-.. -+........+.+++.. ..||.|++|+ --.+|--++...|+......-.|+| +.
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~ 85 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIK 85 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHH
Confidence 346666665332 22233344566777776 6699999999 6666666666666654433333343 44
Q ss_pred hhHhcCCCcEEeCCC-CHHHHHHHHH
Q 004184 169 KCLSKGAVDFLVKPI-RKNELKNLWQ 193 (770)
Q Consensus 169 ~al~aGAddyL~KP~-~~eeL~~~L~ 193 (770)
++++.|+++++.-=+ +.++...+++
T Consensus 86 r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 86 RLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 899999999977544 3455444443
No 142
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=56.20 E-value=67 Score=34.33 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=56.3
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhhh
Q 004184 103 VAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFKC 170 (770)
Q Consensus 103 L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~a 170 (770)
|+..|+.-. +-+.........++.+.. ..||.|++|+ --..+--++...|+........++| +.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 223334444566777766 6699999999 5446777777777654322223333 4488
Q ss_pred HhcCCCcEEe-CCCCHHHHHHHHHHH
Q 004184 171 LSKGAVDFLV-KPIRKNELKNLWQHV 195 (770)
Q Consensus 171 l~aGAddyL~-KP~~~eeL~~~L~~v 195 (770)
++.|+++++. |--+.+++..++..+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999755 555677766665543
No 143
>PRK00811 spermidine synthase; Provisional
Probab=55.91 E-value=46 Score=36.13 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC------CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG------YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G------~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
.+|.+||=|+.+.+..+..|...+ -+|. ...|+.+.+.. ....||+||+|. -|.
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 479999999999999999886532 1333 56676665543 236799999998 664
No 144
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.89 E-value=63 Score=35.82 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=61.3
Q ss_pred EEEEEec--Chh---hHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEccCCCCCH
Q 004184 89 KVLLVEN--DDS---TRHVVAALLRNCGYEVTEATNGLQAWKI----------------LEDLTNHIDLVLTEVMPCLSG 147 (770)
Q Consensus 89 rVLIVDD--d~~---~r~~L~~lLe~~G~eV~~A~dg~EALe~----------------L~~~~~~pDLVLlDiMPgmdG 147 (770)
+|+||-. .+. ....|..+|...|++|.........+.. .......+|+||+ -|.||
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDG 83 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV---LGGDG 83 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE---EcCCH
Confidence 4777733 222 3455666777889988866543332210 0110123566655 37788
Q ss_pred HHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 148 VALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
. +|+..|... ...+||+-+ ..|-.+||.- +.++++..+|.++++..
T Consensus 84 T-~L~aar~~~-~~~~PilGI---N~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 84 T-ILRAAELAR-AADVPVLGV---NLGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred H-HHHHHHHhc-cCCCcEEEE---ecCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 3 445554432 356888854 4577888885 78899999999998653
No 145
>PRK05670 anthranilate synthase component II; Provisional
Probab=55.84 E-value=22 Score=35.99 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=35.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|||||-....-..+.++|++.|+++............+.. ..||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEE
Confidence 8999999999999999999999988766543212223333 34887777
No 146
>PRK13566 anthranilate synthase; Provisional
Probab=55.79 E-value=25 Score=43.28 Aligned_cols=76 Identities=30% Similarity=0.457 Sum_probs=50.6
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCC-CCHHHHHHHHHhhcC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPC-LSGVALLSKIMSHKT 159 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi---MPg-mdGleLlr~IR~~~~ 159 (770)
+..+++|||||....+...|..+|+..|++|..+..... .+.+.. ..||.||+-- .|. ..-.++++++.+
T Consensus 523 ~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a~~--- 596 (720)
T PRK13566 523 VGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAALA--- 596 (720)
T ss_pred CCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHHHH---
Confidence 345689999999999999999999999999987665432 233333 4689887732 121 122344444432
Q ss_pred CCCcchh
Q 004184 160 RKNLPVI 166 (770)
Q Consensus 160 ~~~IPII 166 (770)
..+||+
T Consensus 597 -~~iPIL 602 (720)
T PRK13566 597 -RNLPIF 602 (720)
T ss_pred -CCCcEE
Confidence 468888
No 147
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=55.62 E-value=1.1e+02 Score=32.36 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=61.3
Q ss_pred CcEEEEEecChh---hHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 87 SLKVLLVENDDS---TRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 87 ~lrVLIVDDd~~---~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
.++++||-+.+. ..+.+...++..+. .|......++..+++.. .|++|+=. .++.-|..+++.+.
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a----- 286 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA----- 286 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh-----
Confidence 356666654432 23334444554443 34444444455555543 56666543 34455667777764
Q ss_pred CCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 161 KNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 161 ~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
..+|||+. +.+..+..+|+..|-+.++|..+|..++.
T Consensus 287 ~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 287 MGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred cCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 35678754 44666778999999999999999975553
No 148
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=55.50 E-value=68 Score=34.87 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=54.0
Q ss_pred HHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhh
Q 004184 102 VVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFK 169 (770)
Q Consensus 102 ~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~ 169 (770)
.|++.|..-.. -+......-.+.+++.. ..||.|++|+ --..+--++...|+......-.|+| +.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 35666654322 22233334566677766 5699999999 6556665666566554433333443 448
Q ss_pred hHhcCCCcEEeCCCCH-HHHHHHH
Q 004184 170 CLSKGAVDFLVKPIRK-NELKNLW 192 (770)
Q Consensus 170 al~aGAddyL~KP~~~-eeL~~~L 192 (770)
+|+.||.+++.-=+.- ++...++
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V 109 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVV 109 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHH
Confidence 9999999998866654 4444433
No 149
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=55.47 E-value=12 Score=46.08 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=38.3
Q ss_pred CCchhHH--HHHHHHHhhhcCCc-------cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccc
Q 004184 3 VDGKADK--RLQELNHCLQAGSK-------RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAV 64 (770)
Q Consensus 3 ~~g~g~~--r~~~L~~~l~~~~~-------~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp 64 (770)
|.|+|+- ...+|+..|.+..+ .-..+||+.+++.|||+|......+. |..|+|.++..
T Consensus 814 DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~g----Ga~f~~~LP~~ 880 (890)
T COG2205 814 DEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGG----GAIFVFTLPVE 880 (890)
T ss_pred eCCCCCChhHHHHhhhhhhcCCCCCCCCCccccHHHHHHHHHHcCCeEEEEEcCCC----ceEEEEEeecC
Confidence 5677654 44566777755444 22389999999999999999775443 44455554443
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=54.69 E-value=1.4e+02 Score=34.29 Aligned_cols=107 Identities=7% Similarity=0.131 Sum_probs=64.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~-~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~IR~~~~~~ 161 (770)
.+|.-||-++...+.+++-++..|+. +. ...|..+.+..+......||+||+|. ... +--.+...++.. .
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-~k~~l~~~~~~y---~ 319 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-NKSQLMGACRGY---K 319 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-ChHHHHHHHHHH---H
Confidence 47999999999999999999887763 33 56677777765543235799999997 322 111222222111 1
Q ss_pred CcchhhhhhHhcCCCcEE---eCCCCHHHHHHHHHHHHHH
Q 004184 162 NLPVIIFKCLSKGAVDFL---VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~IPIIvl~al~aGAddyL---~KP~~~eeL~~~L~~vlrr 198 (770)
.+--.+++.+..|..-++ ..-++.++|...+......
T Consensus 320 ~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~ 359 (396)
T PRK15128 320 DINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAID 359 (396)
T ss_pred HHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 111112344444433332 3346778888888877654
No 151
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=54.46 E-value=18 Score=36.72 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=44.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc-c-C-CCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE-V-M-PCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlD-i-M-PgmdGleLlr~IR~~~~~~~IP 164 (770)
+||||||..+..-..|..+|+..|+++.++.....-.+.+. .+|.||+= = + |... -.+.+.|+. ....+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~----~~d~iIi~gGp~~~~~~-~~~~~~i~~--~~~~~P 74 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVE----NFSHILISPGPDVPRAY-PQLFAMLER--YHQHKS 74 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhc----cCCEEEECCCCCChHHh-hHHHHHHHH--hcCCCC
Confidence 68999999999888899999999988776653221123332 36766642 2 2 2111 123445543 235678
Q ss_pred hh
Q 004184 165 VI 166 (770)
Q Consensus 165 II 166 (770)
|+
T Consensus 75 iL 76 (190)
T PRK06895 75 IL 76 (190)
T ss_pred EE
Confidence 87
No 152
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=53.11 E-value=77 Score=34.79 Aligned_cols=101 Identities=18% Similarity=0.260 Sum_probs=61.2
Q ss_pred EEEEEe--cChhh---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 89 KVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 89 rVLIVD--Dd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~-------L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
+|+||- +.+.. ...+..+|+..|+++.........+.. .......+|+||+ -|.||. +++.++.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 82 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV---LGGDGT-MLGIGRQ 82 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE---ECCcHH-HHHHHHH
Confidence 477773 22333 455566677789987765433222110 0111134677776 367773 5555554
Q ss_pred hcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 157 ~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.. ...+||+-+ ..|=.+||. .+.++++...|.++++.
T Consensus 83 ~~-~~~~pilGI---n~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 83 LA-PYGVPLIGI---NHGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred hc-CCCCCEEEE---cCCCccccc-cCCHHHHHHHHHHHHcC
Confidence 32 357788744 457778888 78999999999998754
No 153
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=52.97 E-value=30 Score=36.07 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=45.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHH--HHHHHHHhhcCCCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGV--ALLSKIMSHKTRKN 162 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi---MPgmdGl--eLlr~IR~~~~~~~ 162 (770)
++|||+|........+...|+..|+++..+......+..+......||.||+-= .|..++. .+++++. ...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~----~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA----AAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH----hCC
Confidence 589999999988888999999999988765543321211211013588777642 2332332 2333332 246
Q ss_pred cchh
Q 004184 163 LPVI 166 (770)
Q Consensus 163 IPII 166 (770)
+||+
T Consensus 77 ~PiL 80 (214)
T PRK07765 77 TPLL 80 (214)
T ss_pred CCEE
Confidence 8887
No 154
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.92 E-value=40 Score=36.49 Aligned_cols=76 Identities=17% Similarity=0.269 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC-CCCcchhhhhhHhcCCCcE
Q 004184 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT-RKNLPVIIFKCLSKGAVDF 178 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~-~~~IPIIvl~al~aGAddy 178 (770)
...+..+|+..|+++. . ..+|+||+ -|.|| .+|+.+|.... ...+||+-+ ..|-.+|
T Consensus 17 ~~~l~~~l~~~g~~~~-------------~--~~~Dlvi~---iGGDG-T~L~a~~~~~~~~~~iPilGI---N~G~lGF 74 (265)
T PRK04885 17 ASKLKKYLKDFGFILD-------------E--KNPDIVIS---VGGDG-TLLSAFHRYENQLDKVRFVGV---HTGHLGF 74 (265)
T ss_pred HHHHHHHHHHcCCccC-------------C--cCCCEEEE---ECCcH-HHHHHHHHhcccCCCCeEEEE---eCCCcee
Confidence 4445566666777631 1 34688777 37787 35566654332 147888744 4588899
Q ss_pred EeCCCCHHHHHHHHHHHHHH
Q 004184 179 LVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 179 L~KP~~~eeL~~~L~~vlrr 198 (770)
|. .+.++++...|.++++.
T Consensus 75 L~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 75 YT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred cc-cCCHHHHHHHHHHHHcC
Confidence 99 68899999999998864
No 155
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=52.40 E-value=1.5e+02 Score=31.01 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=39.5
Q ss_pred ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 134 pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.|++|+=. ..+.-|+.+++.+. ..+|||+. +.+..+..+++.++.+.++|..+|..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a-----~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA-----AGVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH-----CCCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 35554432 23334555666664 24677743 44566778999999999999999999886
No 156
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=52.22 E-value=1.1e+02 Score=32.93 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=56.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.+++|+.+.+. ...++.+++..+. .|.......+..+++.. .|++|+=...+.-|+.+++.+. ..+||
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~~E~~~~~~~EAma-----~g~Pv 297 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSEKESFGLAALEAMA-----CGVPV 297 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCCcCCCccHHHHHHH-----cCCCE
Confidence 34555544332 2334444444443 24443433344444433 4555553322233556666663 34677
Q ss_pred hhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 166 IIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 166 Ivl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|+. ..+..|..+|+.+|-+.++|...|..++.
T Consensus 298 I~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 298 VASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred EEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 753 44566788999999999999999988764
No 157
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.80 E-value=62 Score=35.53 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=60.8
Q ss_pred cEEEEEe--cChhh---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004184 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVD--Dd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~-------L~~~~~~pDLVLlDiMPgmdGleLlr~IR 155 (770)
.+|+||- +.+.. ...+..+|+..|+++.........+.. +......+|+||+ -|.||. +++..|
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---lGGDGT-~L~aa~ 81 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV---VGGDGN-MLGAAR 81 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE---ECCcHH-HHHHHH
Confidence 3577773 23333 345666677889988865543332210 0111124666666 377883 455555
Q ss_pred hhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 156 SHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 156 ~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
... ...+|||-+ ..|-.+||. .+.++++..+|.+++..
T Consensus 82 ~~~-~~~~Pilgi---n~G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 82 VLA-RYDIKVIGI---NRGNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred Hhc-CCCCeEEEE---ECCCCCccc-ccCHHHHHHHHHHHHcC
Confidence 432 236788754 347778877 68899999999998764
No 158
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=51.44 E-value=92 Score=35.98 Aligned_cols=101 Identities=12% Similarity=0.169 Sum_probs=64.8
Q ss_pred CcEEEEEecC---hhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004184 87 SLKVLLVEND---DSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 87 ~lrVLIVDDd---~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~ 161 (770)
.++++|+-+. +...+.++.+++..|. .|.... ..+..+++.. .|++++-...+.-++.+++.+. .
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~~Eg~p~~vlEAma-----~ 393 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSISEGQPLVILEAMA-----A 393 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCchhhcCChHHHHHHH-----c
Confidence 4667777543 3455666777776665 344433 4444555543 6777775522334567777764 3
Q ss_pred Ccchhhh------hhHhc------CCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 162 NLPVIIF------KCLSK------GAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 162 ~IPIIvl------~al~a------GAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+|||+. ..+.. |..+++..|-+.++|.++|.+++.
T Consensus 394 G~PVVatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 394 GIPVVATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCCEEECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 5688743 23333 678999999999999999999875
No 159
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=51.21 E-value=12 Score=42.02 Aligned_cols=36 Identities=8% Similarity=-0.101 Sum_probs=26.4
Q ss_pred ccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccc
Q 004184 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAV 64 (770)
Q Consensus 23 ~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp 64 (770)
..-..+|++++++.+||.+.+.+..+. |++|++.+|
T Consensus 387 ~GLGL~ivk~iv~~~gG~i~i~s~~~~------Gt~f~i~lP 422 (430)
T PRK11006 387 SGLGLAIVKHALSHHDSRLEIESEVGK------GTRFSFVLP 422 (430)
T ss_pred CchHHHHHHHHHHHCCCEEEEEecCCC------ceEEEEEec
Confidence 344589999999999999999776554 445555554
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=51.07 E-value=41 Score=35.57 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=44.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EEEEC--CHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VTEAT--NGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKI 154 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~--dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~I 154 (770)
.+|.-||-++...+..++.|++.|+. |.... +..+.++.. ....||+||+|. ..-..-++.+..+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~--~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL--LDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc--cCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 37999999999999999999999863 44333 555554442 237899999998 3333444444333
No 161
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=50.97 E-value=1.1e+02 Score=28.12 Aligned_cols=67 Identities=13% Similarity=0.266 Sum_probs=35.4
Q ss_pred ecChhhHHHHHHHHHhCCCEEEEEC---------------------CHHHHHHHHHhcCCCceEEEEcc---CCCCCHHH
Q 004184 94 ENDDSTRHVVAALLRNCGYEVTEAT---------------------NGLQAWKILEDLTNHIDLVLTEV---MPCLSGVA 149 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~~A~---------------------dg~EALe~L~~~~~~pDLVLlDi---MPgmdGle 149 (770)
|.+......+...|...||.+.... ...++++++++ ..+|+||.-. ....+|+.
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~--~~id~vIn~~~~~~~~~~~~~ 86 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKN--GEIQLVINTPSGKRAIRDGFS 86 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHc--CCeEEEEECCCCCccCccHHH
Confidence 3344344445555556677765332 12456666665 6788887743 22335664
Q ss_pred HHHHHHhhcCCCCcchh
Q 004184 150 LLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 150 Llr~IR~~~~~~~IPII 166 (770)
+.+.- ....+|++
T Consensus 87 iRR~A----v~~~ipl~ 99 (110)
T cd01424 87 IRRAA----LEYKVPYF 99 (110)
T ss_pred HHHHH----HHhCCCEE
Confidence 43332 23467776
No 162
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=50.56 E-value=1.3e+02 Score=33.32 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=63.4
Q ss_pred cEEEEEecC---h-hhHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004184 88 LKVLLVEND---D-STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (770)
Q Consensus 88 lrVLIVDDd---~-~~r~~L~~lLe~~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~ 159 (770)
++++||.+. . .....+..+.+..+. .|.... +.++..+++.. .|++++-...+.-|+-+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~~E~~g~~~lEAma---- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSYNESFGLVAMEAQA---- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCCCCCcChHHHHHHH----
Confidence 566666531 1 334556666666554 244332 34566666654 5766654422334666777764
Q ss_pred CCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 160 RKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 160 ~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
..+|||+. ..+..|..+++..|-+.++|.++|.+++.
T Consensus 325 -~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 325 -CGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred -cCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 35688854 34567888999999999999999998875
No 163
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=50.34 E-value=25 Score=36.04 Aligned_cols=87 Identities=13% Similarity=0.220 Sum_probs=47.3
Q ss_pred hCCCEEE-EECCH-----HHHHHHHHhcCCCceEEEEccCCCCC-------HHHHHHHHHhhcCCCCcchhhhhhHhcCC
Q 004184 109 NCGYEVT-EATNG-----LQAWKILEDLTNHIDLVLTEVMPCLS-------GVALLSKIMSHKTRKNLPVIIFKCLSKGA 175 (770)
Q Consensus 109 ~~G~eV~-~A~dg-----~EALe~L~~~~~~pDLVLlDiMPgmd-------GleLlr~IR~~~~~~~IPIIvl~al~aGA 175 (770)
..|++++ ..-+| .+..++|.+ ...|++++|+.|.++ -..+++.||+.. |.+|||+++.+-...
T Consensus 31 ~l~~~~iNLGfsG~~~le~~~a~~ia~--~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~~~~~ 106 (178)
T PF14606_consen 31 RLGLDVINLGFSGNGKLEPEVADLIAE--IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPIPYPA 106 (178)
T ss_dssp HHT-EEEEEE-TCCCS--HHHHHHHHH--S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----TT
T ss_pred HcCCCeEeeeecCccccCHHHHHHHhc--CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecCCccc
Confidence 3477776 22222 455667776 567999999833333 235778888764 789999886444333
Q ss_pred CcEEeC--CCCHHHHHHHHHHHHHHhh
Q 004184 176 VDFLVK--PIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 176 ddyL~K--P~~~eeL~~~L~~vlrr~~ 200 (770)
. ++.. -....+..+.++.+++..+
T Consensus 107 ~-~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 107 G-YFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp T-TS--TTS--HHHHHHHHHHHHHHHH
T ss_pred c-ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3 3333 2355677777777777654
No 164
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.32 E-value=74 Score=35.00 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=59.8
Q ss_pred EEEEEe--cCh---hhHHHHHHHHHhCCCEEEEECCHHHHHH-----HH--HhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 89 KVLLVE--NDD---STRHVVAALLRNCGYEVTEATNGLQAWK-----IL--EDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 89 rVLIVD--Dd~---~~r~~L~~lLe~~G~eV~~A~dg~EALe-----~L--~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
+|+||- +.+ ...+.+..+|++.|+++.......+.+. .. ......+|+||+ -|.||. +++.++.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---~GGDGt-~l~~~~~ 81 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV---VGGDGS-LLGAARA 81 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE---EeCcHH-HHHHHHH
Confidence 577773 222 3444566667788998876554322211 00 111134677766 266773 3444443
Q ss_pred hcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 157 ~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.. ...+||+-+. .|=.+||. .++++++..+|..+++.
T Consensus 82 ~~-~~~~Pvlgin---~G~lGFl~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 82 LA-RHNVPVLGIN---RGRLGFLT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred hc-CCCCCEEEEe---CCcccccc-cCCHHHHHHHHHHHHcC
Confidence 32 3578888544 47777884 68899999999998863
No 165
>PRK13560 hypothetical protein; Provisional
Probab=50.30 E-value=11 Score=45.37 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=25.1
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~l 63 (770)
.-.++||++|+++|||.|.+.|. .|+.|+|++|+
T Consensus 770 gLGLai~~~iv~~~gG~I~v~S~------~Gt~F~i~lP~ 803 (807)
T PRK13560 770 TLGLQLVCALVKQLDGEIALDSR------GGARFNIRFPM 803 (807)
T ss_pred CccHHHHHHHHHHcCCEEEEEcC------CceEEEEEecC
Confidence 34489999999999999999773 25555555443
No 166
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=50.24 E-value=24 Score=35.92 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=44.9
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCCCcch
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNG-LQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg-~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~~IPI 165 (770)
|||||.....-..+..+|++.|+.+..+... .++ ..+.. ..||.||+-- | |..++. ..+.|+.. ...+||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~--~~~~~iilsgGp~~~~~~~~-~~~~i~~~--~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEA--LNPTHLVISPGPCTPNEAGI-SLQAIEHF--AGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhh--CCCCEEEEeCCCCChHHCcc-hHHHHHHh--cCCCCE
Confidence 8999999999999999999999988765533 222 22333 4577766643 3 222322 22333322 356888
Q ss_pred h
Q 004184 166 I 166 (770)
Q Consensus 166 I 166 (770)
+
T Consensus 76 L 76 (193)
T PRK08857 76 L 76 (193)
T ss_pred E
Confidence 8
No 167
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=49.77 E-value=1.5e+02 Score=30.38 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=60.1
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.++++|+.+.+. ...+..++...+. .|......++..+++.. .|++|.-. . +.-|..+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH-----cCC
Confidence 345666655433 3344445554443 33333333555555544 57777765 4 223566777664 356
Q ss_pred chhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 164 PVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 164 PIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|||+. .....+..+++.++.+.++|...|..++.
T Consensus 278 Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 278 PVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 77743 22344568899999999999999999875
No 168
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.55 E-value=46 Score=30.25 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+|++||.++.. ...++..|+.++ -=..-.+.|+.+.- ...+.||+..--+..-+.++..+|+.. +.++||
T Consensus 22 ~~vvvid~d~~~----~~~~~~~~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d~~n~~~~~~~r~~~--~~~~ii 93 (116)
T PF02254_consen 22 IDVVVIDRDPER----VEELREEGVEVIYGDATDPEVLERAGI--EKADAVVILTDDDEENLLIALLARELN--PDIRII 93 (116)
T ss_dssp SEEEEEESSHHH----HHHHHHTTSEEEES-TTSHHHHHHTTG--GCESEEEEESSSHHHHHHHHHHHHHHT--TTSEEE
T ss_pred CEEEEEECCcHH----HHHHHhcccccccccchhhhHHhhcCc--cccCEEEEccCCHHHHHHHHHHHHHHC--CCCeEE
Q ss_pred hh--------hhHhcCCCcEEe
Q 004184 167 IF--------KCLSKGAVDFLV 180 (770)
Q Consensus 167 vl--------~al~aGAddyL~ 180 (770)
+. .+..+|++..+.
T Consensus 94 ~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEESSHHHHHHHHHTT-SEEEE
T ss_pred EEECCHHHHHHHHHCCcCEEEC
No 169
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=49.23 E-value=89 Score=33.51 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhhh
Q 004184 103 VAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFKC 170 (770)
Q Consensus 103 L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~a 170 (770)
|++.|+.-.. -+........+.+++.. ..||.|++|+ --.++--++...|+......-.|+| +.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 4455554322 22233344566777766 5699999999 6666666666666654433333443 4589
Q ss_pred HhcCCCcEEeCCCC-HHHHHHHHH
Q 004184 171 LSKGAVDFLVKPIR-KNELKNLWQ 193 (770)
Q Consensus 171 l~aGAddyL~KP~~-~eeL~~~L~ 193 (770)
++.|+++++.-=++ .++...+++
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHH
Confidence 99999999875444 455444443
No 170
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.87 E-value=67 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred EEEEecChhhHHHHHHHHHh---CC--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 90 VLLVENDDSTRHVVAALLRN---CG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~---~G--~eV-~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
|||-|++-... .+...++. .. ..| +.+.+.+||.+.+. ..+|+|++|-|.-.+--++++.|+.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~---agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK---AGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH---cCcCEEEECCCCHHHHHHHHHHHHh
Confidence 88888886655 45555442 21 233 48999999999997 4579999998533233344555544
No 171
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=48.35 E-value=55 Score=35.17 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=62.1
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhh
Q 004184 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFK 169 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~--A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~ 169 (770)
.++..|+.-...+-. .-.-.-..|++.. ..||.+++|. --..|.-.++..|+.....+..||| +.+
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq 84 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQ 84 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHH
Confidence 456666644334432 2222334566665 7799999999 7777888899999887766667776 448
Q ss_pred hHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 170 CLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 170 al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
+++.||..+|.-=++..|=.+.+-+..
T Consensus 85 ~LD~GAqtlliPmV~s~eqAr~~V~A~ 111 (255)
T COG3836 85 LLDIGAQTLLIPMVDTAEQARQAVAAT 111 (255)
T ss_pred HHccccceeeeeccCCHHHHHHHHHhc
Confidence 999999999986665544443333333
No 172
>CHL00101 trpG anthranilate synthase component 2
Probab=47.97 E-value=26 Score=35.60 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=37.0
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlD 140 (770)
|||||.....-..|.+.|+..|+.+..+......+..+.. ..||.||+-
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiis 50 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIIS 50 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEEC
Confidence 8999999999999999999999998877754322333333 458877764
No 173
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=47.80 E-value=55 Score=32.09 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=44.1
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT----NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~----dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
.+.+.+|+|+.......+-|..+|...|+.|..+. +.++ .++ .-|||++-. -+.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~---~v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS---KVH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH---HHh----hCCEEEEecCCCC
Confidence 46778999999999999999999999999999888 4444 343 369999988 553
No 174
>PLN02823 spermine synthase
Probab=47.13 E-value=66 Score=36.08 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=38.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-----G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
.+|.+||=|+.+.++.+..|... .-++. ...|+.+.|+. ....|||||+|+ -|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---RDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---CCCCccEEEecCCCc
Confidence 57999999999999999988532 12333 56666666543 236799999998 65
No 175
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=46.37 E-value=1.7e+02 Score=33.14 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=64.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCE--EEEEC--CHHHHHHHHHhcCCCceEEEEcc-C-C--CCCH--HHHHHHHHh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VTEAT--NGLQAWKILEDLTNHIDLVLTEV-M-P--CLSG--VALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~--dg~EALe~L~~~~~~pDLVLlDi-M-P--gmdG--leLlr~IR~ 156 (770)
.++++||-+-+. +..++.+++..|.. |.... +-++..+++.. .|++|+=. . + +.+| +-+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 356677776553 45566677666542 33322 34566666654 57666533 2 1 1244 44566653
Q ss_pred hcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 157 ~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
..+|||.. +.+..|..+||..|-+.++|.++|..++.
T Consensus 327 ----~G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 35688743 45677889999999999999999998876
No 176
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.68 E-value=51 Score=33.75 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=36.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
++|||||-.--+...+..+|+..|+++....+.. .+ ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~----~~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPE----EI----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHH----HH----ccCCEEEE
Confidence 5899999999999999999999999999887542 22 34888877
No 177
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=45.59 E-value=19 Score=41.29 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=35.7
Q ss_pred CCchhHHHHHHHHHhhh------cCCccchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 3 VDGKADKRLQELNHCLQ------AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 3 ~~g~g~~r~~~L~~~l~------~~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
++|+|.. ...+.++|. ..+..-..+|++++++.+||.+.+.+..+ .|++|++.+|.
T Consensus 474 D~G~gi~-~~~~~~iF~~~~~~~~~g~GlGL~iv~~iv~~~~G~i~v~s~~~------~G~~f~i~lP~ 535 (542)
T PRK11086 474 DDGPGIA-PDEIDAIFDKGYSTKGSNRGVGLYLVKQSVENLGGSIAVESEPG------VGTQFFVQIPW 535 (542)
T ss_pred ECCCCCC-HHHHHHHHhCCCccCCCCCcCcHHHHHHHHHHcCCEEEEEeCCC------CcEEEEEEEeC
Confidence 5677654 223444442 23344558999999999999999877654 44555555554
No 178
>PLN02366 spermidine synthase
Probab=45.57 E-value=80 Score=34.97 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=44.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmd-----GleLlr~IR 155 (770)
.+|.+||=|+.+.+..++.|... ++ ++. ...|+.+.++.... ..||+||+|. -|..- ..++++.++
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 47999999999999999888643 11 343 55666666554322 5799999998 66422 224555555
Q ss_pred hh
Q 004184 156 SH 157 (770)
Q Consensus 156 ~~ 157 (770)
..
T Consensus 194 ~~ 195 (308)
T PLN02366 194 RA 195 (308)
T ss_pred Hh
Confidence 43
No 179
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=45.57 E-value=1.1e+02 Score=29.81 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=62.9
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.+.+.+|.++.... ....+...+.. +.+++.+.+..+++++|.. ..+|++|+|. ..+...++... ....
T Consensus 107 dl~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~--g~~d~~i~~~------~~~~~~~~~~~-~~~~ 175 (225)
T PF00497_consen 107 DLKGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLS--GRIDAFIVDE------STAEYLLKRHP-LENI 175 (225)
T ss_dssp GGTTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHT--TSSSEEEEEH------HHHHHHHHHTT-TCEE
T ss_pred hhcCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhc--CCeeeeeccc------hhhhhhhhhcc-cccc
Confidence 34567888888854 44455555433 6788899999999999998 8999999985 23333444332 1222
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
.++ ..........+...| ...+|...|.+.+.....
T Consensus 176 ~~~-~~~~~~~~~~~~~~~-~~~~l~~~~n~~i~~l~~ 211 (225)
T PF00497_consen 176 VVI-PPPISPSPVYFAVRK-KNPELLEIFNKAIRELKQ 211 (225)
T ss_dssp EEE-EEEEEEEEEEEEEET-TTHHHHHHHHHHHHHHHH
T ss_pred ccc-ccccccceeEEeecc-cccHHHHHHHHHHHHHHh
Confidence 221 100111111122223 456788888888887654
No 180
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.12 E-value=78 Score=35.04 Aligned_cols=91 Identities=18% Similarity=0.255 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCCEEEEECCHHHHHHHH----------------HhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004184 99 TRHVVAALLRNCGYEVTEATNGLQAWKIL----------------EDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg~EALe~L----------------~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~ 162 (770)
....|..+|+..|+++....+..+.+... ......+|+||+ -|.|| .+++..|... ...
T Consensus 18 ~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---iGGDG-TlL~aar~~~-~~~ 92 (305)
T PRK02649 18 TAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV---LGGDG-TVLSAARQLA-PCG 92 (305)
T ss_pred HHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE---EeCcH-HHHHHHHHhc-CCC
Confidence 34566677778899988655433322100 110123566665 37788 4556665432 357
Q ss_pred cchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 163 LPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+||+-+ ..|-.+||.- +.++++...|.++++.
T Consensus 93 iPilGI---N~G~lGFLt~-~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 93 IPLLTI---NTGHLGFLTE-AYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcEEEE---eCCCCccccc-CCHHHHHHHHHHHHcC
Confidence 888854 4578888875 6789999999998864
No 181
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=44.87 E-value=17 Score=41.66 Aligned_cols=57 Identities=14% Similarity=-0.024 Sum_probs=34.7
Q ss_pred CCchhHHH--HHHHHHhhh---cCCccchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 3 VDGKADKR--LQELNHCLQ---AGSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 3 ~~g~g~~r--~~~L~~~l~---~~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
|+|.|... ...|+..+. ..+..-...+++++++++||.+.+++..+. |++|++.+|.
T Consensus 540 D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~~~~~~~~~~G~i~~~s~~~~------Gt~~~i~lp~ 601 (607)
T PRK11360 540 DNGCGIDPELLKKIFDPFFTTKAKGTGLGLALSQRIINAHGGDIEVESEPGV------GTTFTLYLPI 601 (607)
T ss_pred eCCCCCCHHHHhhhcCCceeCCCCCCchhHHHHHHHHHHcCCEEEEEEcCCC------ceEEEEEecC
Confidence 56777442 223333332 123344589999999999999888776654 4455555544
No 182
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.54 E-value=1.2e+02 Score=33.54 Aligned_cols=102 Identities=21% Similarity=0.317 Sum_probs=60.0
Q ss_pred cEEEEEe--cChhh---HHHHHHHHHhCCCEEEEECCHHH---HHHH---------HHhcCCCceEEEEccCCCCCHHHH
Q 004184 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQ---AWKI---------LEDLTNHIDLVLTEVMPCLSGVAL 150 (770)
Q Consensus 88 lrVLIVD--Dd~~~---r~~L~~lLe~~G~eV~~A~dg~E---ALe~---------L~~~~~~pDLVLlDiMPgmdGleL 150 (770)
.+|+||- +.+.. ...|..+|+..|+++........ ++.. .......+|+||+ -|.||. +
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDGT-~ 81 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV---LGGDGT-F 81 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE---ECCcHH-H
Confidence 3577772 33333 34556667788988876432111 1100 0110123566665 377883 4
Q ss_pred HHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 151 LSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 151 lr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++..|... ...+||+-+ ..|-.+||.- ++++++...|.++++.
T Consensus 82 L~aa~~~~-~~~~PilGI---N~G~lGFL~~-~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 82 LSVAREIA-PRAVPIIGI---NQGHLGFLTQ-IPREYMTDKLLPVLEG 124 (296)
T ss_pred HHHHHHhc-ccCCCEEEE---ecCCCeEeec-cCHHHHHHHHHHHHcC
Confidence 55555432 347888854 4588889984 8999999999998864
No 183
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=43.57 E-value=90 Score=33.47 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=37.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G-----~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
.+|.+||-++.+.+..+..|...+ -++. ...++.+.++.. ...||+||+|. -|.
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPV 157 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCC
Confidence 479999999999999988876432 1222 345665555433 36899999998 654
No 184
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=43.45 E-value=39 Score=36.43 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=39.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~-------dg~EALe~L~~~~~~pDLVLlDi 141 (770)
|||||+-.+-.+-..|...|...|++|+... +.++..+++.. ..||+||-=.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~--~~pd~Vin~a 59 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEA--FKPDVVINCA 59 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHH--H--SEEEE--
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHH--hCCCeEeccc
Confidence 6899999999999999999999999988663 55566666666 5789887755
No 185
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.40 E-value=79 Score=37.90 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=63.3
Q ss_pred CCCcEEEEEec--ChhhH---HHHHHHHHhCCCEEEEECCHHHHHHH-H-H-----hcCCCceEEEEccCCCCCHHHHHH
Q 004184 85 LRSLKVLLVEN--DDSTR---HVVAALLRNCGYEVTEATNGLQAWKI-L-E-----DLTNHIDLVLTEVMPCLSGVALLS 152 (770)
Q Consensus 85 ~~~lrVLIVDD--d~~~r---~~L~~lLe~~G~eV~~A~dg~EALe~-L-~-----~~~~~pDLVLlDiMPgmdGleLlr 152 (770)
.+.++|+||-. .+... ..+..+|+..|+++.........+.. + . .....+|+||+ -|.|| .+|+
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~---lGGDG-T~L~ 363 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS---IGGDG-TVLR 363 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE---ECCcH-HHHH
Confidence 34568888833 23333 34555666778888765443332221 0 0 00013455555 37787 3556
Q ss_pred HHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 153 KIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 153 ~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..|... ...+||+-+ ..|=.+||. .+.++++...|..+++.
T Consensus 364 aa~~~~-~~~~PilGi---n~G~lGFL~-~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 364 ASKLVN-GEEIPIICI---NMGTVGFLT-EFSKEEIFKAIDSIISG 404 (569)
T ss_pred HHHHhc-CCCCCEEEE---cCCCCCcCc-ccCHHHHHHHHHHHHcC
Confidence 665432 357888854 457788888 78999999999999864
No 186
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.06 E-value=1.8e+02 Score=34.58 Aligned_cols=103 Identities=22% Similarity=0.326 Sum_probs=60.4
Q ss_pred CcEEEEE--ecChhhHHH---HHHHHH-hCCCEEEEECCHHHHHH----------------HHHhcCCCceEEEEccCCC
Q 004184 87 SLKVLLV--ENDDSTRHV---VAALLR-NCGYEVTEATNGLQAWK----------------ILEDLTNHIDLVLTEVMPC 144 (770)
Q Consensus 87 ~lrVLIV--DDd~~~r~~---L~~lLe-~~G~eV~~A~dg~EALe----------------~L~~~~~~pDLVLlDiMPg 144 (770)
..+|+|| -+.+...+. |..+|+ ..|+.|+........+. .+......+||||+ -|
T Consensus 194 p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs---iG 270 (508)
T PLN02935 194 PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT---LG 270 (508)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE---EC
Confidence 4578887 334444444 444555 46888876543322221 00000123566655 37
Q ss_pred CCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 145 LSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 145 mdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.||. +|+..|... ...+|||-+ ..|-.+|| -++.++++...|..+++.
T Consensus 271 GDGT-lL~Aar~~~-~~~iPILGI---N~G~LGFL-t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 271 GDGT-VLWAASMFK-GPVPPVVPF---SMGSLGFM-TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CcHH-HHHHHHHhc-cCCCcEEEE---eCCCccee-cccCHHHHHHHHHHHHcC
Confidence 7883 555555432 346787743 56888888 478999999999999864
No 187
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=42.96 E-value=71 Score=34.95 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE--EE--EECCHHHHHHHHHhc--CCCceEEEEcc-CCCCC--HHHHHHHHHh
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VT--EATNGLQAWKILEDL--TNHIDLVLTEV-MPCLS--GVALLSKIMS 156 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~--~A~dg~EALe~L~~~--~~~pDLVLlDi-MPgmd--GleLlr~IR~ 156 (770)
...-++++||....+.+|. .+|.. ++ ...+..+.+..|... ...-=.++.|. ||..+ |+.|++..++
T Consensus 29 ~~~D~iaaEDTR~t~~LL~----~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~ 104 (275)
T COG0313 29 KEVDVIAAEDTRVTRKLLS----HLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAARE 104 (275)
T ss_pred hhCCEEEEeccHHHHHHHH----HhCCCCceecccCCcHHHHHHHHHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHH
Confidence 4567999999987766554 44432 22 334555544444321 13234577899 99764 9999999987
Q ss_pred hcCCCCcchh
Q 004184 157 HKTRKNLPVI 166 (770)
Q Consensus 157 ~~~~~~IPII 166 (770)
.. |+|+
T Consensus 105 ~g----i~V~ 110 (275)
T COG0313 105 AG----IRVV 110 (275)
T ss_pred cC----CcEE
Confidence 64 5555
No 188
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=42.85 E-value=1.6e+02 Score=31.48 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=48.1
Q ss_pred CcEEEEE------ecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004184 87 SLKVLLV------ENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (770)
Q Consensus 87 ~lrVLIV------DDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~ 158 (770)
..+|++| +|.......++..|+.+|+++......++.++.|.. .|+|++ ++.+-+.+++.++...
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~----ad~I~v---~GGnt~~l~~~l~~~g 101 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN----AEAIFV---GGGNTFQLLKQLYERG 101 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc----CCEEEE---CCccHHHHHHHHHHCC
Confidence 3456665 444455667889999999999988888877777765 677776 5788888888887653
No 189
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=42.71 E-value=1.7e+02 Score=32.52 Aligned_cols=70 Identities=16% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 120 g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
.++..+++.. .|+.++=..|..-|+.+++.+. ..+|||+. ..+..|..++|..|.+.++|.+.|.
T Consensus 291 ~~~~~~~l~~----adv~v~~s~~e~~~~~llEAmA-----~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~ 361 (396)
T cd03818 291 YDQYLALLQV----SDVHVYLTYPFVLSWSLLEAMA-----CGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVI 361 (396)
T ss_pred HHHHHHHHHh----CcEEEEcCcccccchHHHHHHH-----CCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHH
Confidence 3555566654 4655542255555666777663 35678744 4456678899999999999999999
Q ss_pred HHHHH
Q 004184 194 HVWRR 198 (770)
Q Consensus 194 ~vlrr 198 (770)
.++..
T Consensus 362 ~ll~~ 366 (396)
T cd03818 362 ELLDD 366 (396)
T ss_pred HHHhC
Confidence 98753
No 190
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=42.49 E-value=51 Score=35.09 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=44.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G---~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-----leLlr~IR 155 (770)
.+|-+||=|+.+.+..+.+|... + -++. ...|+...|+...+ ..||+||+|+ -|...+ .++.+.++
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~ 178 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDVIIVDLTDPDGPAPNLFTREFYQLCK 178 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEEEEEESSSTTSCGGGGSSHHHHHHHH
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccEEEEeCCCCCCCcccccCHHHHHHHH
Confidence 47999999999999999988743 1 1232 67777766655432 2899999999 765443 34555444
Q ss_pred h
Q 004184 156 S 156 (770)
Q Consensus 156 ~ 156 (770)
+
T Consensus 179 ~ 179 (246)
T PF01564_consen 179 R 179 (246)
T ss_dssp H
T ss_pred h
Confidence 3
No 191
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=42.35 E-value=1e+02 Score=34.64 Aligned_cols=103 Identities=15% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE---------------VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVA 149 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e---------------V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGle 149 (770)
..++++||-+.+.....+.++++..|+. |..+....+...++.. -|++|+-- +...-|..
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~ 336 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHN 336 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCC
Confidence 3467788887776556677888777763 3333334455555543 57766643 32223555
Q ss_pred HHHHHHhhcCCCCcchhhh-------hhHhc-CCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 150 LLSKIMSHKTRKNLPVIIF-------KCLSK-GAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 150 Llr~IR~~~~~~~IPIIvl-------~al~a-GAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+++.+. ..+|||+- ...+. ...+++..|-+.++|.++|..++.
T Consensus 337 ~lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAA-----FGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHH-----hCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhc
Confidence 666653 24677741 12222 134677778899999999988875
No 192
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=42.25 E-value=1.4e+02 Score=32.12 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=60.3
Q ss_pred CCcEEEEEecChh----hHHHH--HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHH
Q 004184 86 RSLKVLLVENDDS----TRHVV--AALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALL 151 (770)
Q Consensus 86 ~~lrVLIVDDd~~----~r~~L--~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-----leLl 151 (770)
.-+|+=|+.|+.. ..+.+ .+.|-+.||.|. +..|..-|-++..- + . .+||=+ -|-.+| ...+
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-G--c-aavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-G--C-AAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T----SEBEEBSSSTTT---SSTHHHH
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-C--C-CEEEecccccccCcCCCCHHHH
Confidence 4467767766643 23333 345667899998 44455555444432 2 2 255556 665444 3677
Q ss_pred HHHHhhcCCCCcchhh----------hhhHhcCCCcEEeC-----CCCHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVII----------FKCLSKGAVDFLVK-----PIRKNELKNLWQHVWR 197 (770)
Q Consensus 152 r~IR~~~~~~~IPIIv----------l~al~aGAddyL~K-----P~~~eeL~~~L~~vlr 197 (770)
+.|++.. .+|||+ ..+++.|++..|+- --++-.+..+++..+.
T Consensus 168 ~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 168 RIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 8887663 789984 38899999999864 5566777777766654
No 193
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=41.45 E-value=1.3e+02 Score=32.58 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhhcCCCCcchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 145 LSGVALLSKIMSHKTRKNLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 145 mdGleLlr~IR~~~~~~~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.-|+.+++.+. ..+|||+. ..+..|..+||..|-+.++|..+|..++..
T Consensus 290 g~~~~~lEAma-----~G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 290 GFGLSLMEALS-----HGLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ccChHHHHHHh-----CCCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 34666777663 35788743 345668899999999999999999998853
No 194
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=41.16 E-value=2.4e+02 Score=28.92 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=58.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE--EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
++++|+.+. .....+..+++..+. .|. -.-+.++..+++.. .|++|+-...+.-|..+++.+. ..+
T Consensus 231 ~~l~i~G~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~~~~~~~~~Ea~~-----~g~ 300 (374)
T cd03801 231 VRLVIVGDG-PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLYEGFGLVLLEAMA-----AGL 300 (374)
T ss_pred eEEEEEeCc-HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchhccccchHHHHHH-----cCC
Confidence 555555533 333444444433321 222 22333666666654 5666664422333555666653 356
Q ss_pred chhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||+. ..+..+-.+++..+.+.++|.+.|..++..
T Consensus 301 pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 301 PVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred cEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 77754 334557788999999999999999988653
No 195
>PRK10364 sensor protein ZraS; Provisional
Probab=41.08 E-value=29 Score=39.36 Aligned_cols=57 Identities=16% Similarity=-0.004 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHhhhc------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 3 VDGKADKRLQELNHCLQA------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 3 ~~g~g~~r~~~L~~~l~~------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
|+|+|.. ...+.+.|.. .+..-..+|++++++.+||.+.+.+..+ .|++|++.+|..
T Consensus 387 D~G~Gi~-~~~~~~if~~~~~~k~~g~GlGL~iv~~~v~~~gG~i~i~s~~~------~Gt~f~i~lP~~ 449 (457)
T PRK10364 387 DSGKGIA-ADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEG------KGATFTLWLPVN 449 (457)
T ss_pred ECCCCCC-HHHHHHHhCccccCCCCCCcccHHHHHHHHHHCCCEEEEEeCCC------CcEEEEEEecCC
Confidence 5677754 2233344421 2234458999999999999988866544 456666666654
No 196
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=41.05 E-value=11 Score=23.47 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.9
Q ss_pred cccccccc
Q 004184 596 LTQHYDNC 603 (770)
Q Consensus 596 ~~~~~~~~ 603 (770)
|.+|||||
T Consensus 6 fk~hhhhh 13 (16)
T PF08047_consen 6 FKHHHHHH 13 (16)
T ss_pred eccccccc
Confidence 55554443
No 197
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=40.85 E-value=1.5e+02 Score=32.42 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCCCcchhhhh-------hHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 147 GVALLSKIMSHKTRKNLPVIIFK-------CLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl~-------al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+.+++.+. ..+|||... .+..|..++|..|.+.++|.++|..++...
T Consensus 271 ~~~~lEAma-----~G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 271 PMTLLEAMS-----YGIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred ChHHHHHHH-----cCCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 566666664 346777543 345677899999999999999999988654
No 198
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=40.81 E-value=2.4e+02 Score=32.32 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=38.0
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcC------CCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKG------AVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 134 pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aG------AddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.|++|+=..-+.-|+.+++.+.. .+|+|+. ..+..| ..+|+..|.+.++|..+|.+++...
T Consensus 366 aDv~l~pS~~E~~gl~~lEAma~-----G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 366 ADFILMPSRFEPCGLTQLYAMRY-----GTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLY 438 (473)
T ss_pred CCEEEeCCCcCCcHHHHHHHHHC-----CCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHH
Confidence 45555432223345555555542 3455533 223344 7889999999999999999988754
No 199
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=40.49 E-value=56 Score=35.11 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 99 TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
....+...|++.||+|..+....+.++.+.. ..+|+||.=+
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~--~~~D~v~~~~ 64 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQLKE--LGFDRVFNAL 64 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHhcc--CCCCEEEEec
Confidence 3466778888999999988766777777765 6799998754
No 200
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=40.21 E-value=98 Score=35.62 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=42.6
Q ss_pred CcEEEEEec-ChhhHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEcc--CCCCC
Q 004184 87 SLKVLLVEN-DDSTRHVVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV--MPCLS 146 (770)
Q Consensus 87 ~lrVLIVDD-d~~~r~~L~~lLe~~G~eV~~A~--dg~EALe~L~~~~~~pDLVLlDi--MPgmd 146 (770)
+=+||+.+| ---.+..+..+|.++|++|..+. +..+.++.+.. ...++|+++. -|-|.
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~ 164 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLE 164 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccc
Confidence 347888877 55678889999999999999777 44455666653 4689999997 45443
No 201
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=40.20 E-value=1.2e+02 Score=34.92 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=60.5
Q ss_pred ecChhhHHHHHHHHHhCCCE----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEcc-CCCC
Q 004184 94 ENDDSTRHVVAALLRNCGYE----VTEAT-----------------------NGLQAWKILEDLTNHIDLVLTEV-MPCL 145 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~e----V~~A~-----------------------dg~EALe~L~~~~~~pDLVLlDi-MPgm 145 (770)
+++....+.+++.++..||. |..+- +.++|++++......++|+.+.- ++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777778888888877553 33222 34888887765334588888887 7755
Q ss_pred CHHHHHHHHHhhcCCCCcchh-----------hhhhHhcCC-CcEEeCCCCHHHHHHHHH
Q 004184 146 SGVALLSKIMSHKTRKNLPVI-----------IFKCLSKGA-VDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 146 dGleLlr~IR~~~~~~~IPII-----------vl~al~aGA-ddyL~KP~~~eeL~~~L~ 193 (770)
| ++-.++|++.- ...+||+ +.++++.++ +.+++||-..--|..+++
T Consensus 290 D-~eg~~~L~~~~-g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 5 55556666542 2346664 225566665 556779987554544443
No 202
>PRK10490 sensor protein KdpD; Provisional
Probab=40.09 E-value=28 Score=43.90 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
-..+|++++++.|||.|.+.+..+. |++|++.+|..
T Consensus 848 LGL~Ivk~ive~hGG~I~v~s~~~~------Gt~f~i~LPl~ 883 (895)
T PRK10490 848 LGLAICRAIVEVHGGTIWAENRPEG------GACFRVTLPLE 883 (895)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCCC------eEEEEEEeECC
Confidence 3489999999999999998776553 45555555543
No 203
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=40.00 E-value=24 Score=40.83 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=27.1
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.-..+|++++++.+||.+.+.+..| .|++|++.+|.
T Consensus 504 GlGL~ivk~iv~~~~G~i~v~s~~~------~Gt~f~i~lP~ 539 (545)
T PRK15053 504 GIGLYLIASYVTRCGGVITLEDNDP------CGTLFSIFIPK 539 (545)
T ss_pred eeCHHHHHHHHHHcCCEEEEEECCC------CeEEEEEEECC
Confidence 3458999999999999998877655 45566666654
No 204
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=39.74 E-value=80 Score=41.23 Aligned_cols=76 Identities=20% Similarity=0.334 Sum_probs=57.9
Q ss_pred cEEEEE----ecChhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-C-CCCCH-HHHHHHHHhh
Q 004184 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-M-PCLSG-VALLSKIMSH 157 (770)
Q Consensus 88 lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-M-PgmdG-leLlr~IR~~ 157 (770)
.+|||. |-+..=..++.-+|+..||+|+-.. ..++.++.+++ ..+|+|-+-. | +.+.. .++++.|++.
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e--~~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKD--HNADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 477777 7777778888889999999998443 46788888887 8899999988 6 44444 4578888876
Q ss_pred cCCCCcchhh
Q 004184 158 KTRKNLPVII 167 (770)
Q Consensus 158 ~~~~~IPIIv 167 (770)
. ..+||++
T Consensus 811 g--~~v~v~v 818 (1178)
T TIGR02082 811 G--ITIPLLI 818 (1178)
T ss_pred C--CCceEEE
Confidence 4 4677773
No 205
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=39.51 E-value=75 Score=32.52 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=35.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|+|+|||--.-+...+...|+..|+++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~----~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I----LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h----CCCCEEEE
Confidence 57999998888888899999999999999988754 2 23677665
No 206
>PRK00654 glgA glycogen synthase; Provisional
Probab=39.26 E-value=3e+02 Score=31.68 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=58.1
Q ss_pred CcEEEEEecC-hhhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVEND-DSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd-~~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
..+++|+-+- +.....++.+.+..+-.+. ..-+.+.+-.++.. .|++|+=..-+.-|+.+++.+.. .+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS~~E~~gl~~lEAma~-----G~ 381 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPSRFEPCGLTQLYALRY-----GT 381 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCCCCCCchHHHHHHHHC-----CC
Confidence 3556666553 2344556666655554332 22222222233332 56666633334456666666642 24
Q ss_pred chhhh------hhHhcC------CCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF------KCLSKG------AVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl------~al~aG------AddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+|+. ..+..| ..+|+..|-+.++|..+|.+++...
T Consensus 382 p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 382 LPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELY 429 (466)
T ss_pred CEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 44432 223344 7789999999999999999887643
No 207
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=39.17 E-value=1.1e+02 Score=32.27 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=42.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~--~~~pDLVLlDi 141 (770)
.+|.-+|-++...+..+..++..|+. +. ...+..+.+..+... ...||+||+|.
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDA 152 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECC
Confidence 37999999999999999999988863 33 666777877766431 25799999997
No 208
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=38.99 E-value=2.4e+02 Score=31.62 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=55.5
Q ss_pred EEEEEe----cChhhHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC--H
Q 004184 89 KVLLVE----NDDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS--G 147 (770)
Q Consensus 89 rVLIVD----Dd~~~r~~L~~lLe~~G-~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPg------------md--G 147 (770)
.+|+|| +.....+.++.+=+.+. ..|+ .+.+.++|..++. ..+|+|++-.-++ .. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH---cCcCEEEECCCCCcccccccccCCCCCccH
Confidence 678886 33444445555544553 4444 3789999988776 4588877543222 12 4
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEeC
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~K 181 (770)
+..+..+++. ..+||| +.+|+.+||+.+..=
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 5567777754 358888 458999999987654
No 209
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=38.80 E-value=3e+02 Score=29.50 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=59.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEcc-C-C----CCCHHHHHHHHHh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEV-M-P----CLSGVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDi-M-P----gmdGleLlr~IR~ 156 (770)
.++++||-+.+. ...++.+.+..|+ .|.... +.++..+++.. .|++|+=. . + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 456667766543 2445555555432 333322 23455555544 46655532 1 2 112556666664
Q ss_pred hcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 157 ~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
..+|||+. ..+..+..+++..|-+.++|.++|.+++.
T Consensus 293 ----~G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 ----SGVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred ----cCCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 34677743 33456777899999999999999998875
No 210
>PRK04457 spermidine synthase; Provisional
Probab=38.12 E-value=1.2e+02 Score=32.49 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=45.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-C----CCHHHHHHHHHhh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-C----LSGVALLSKIMSH 157 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G--~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP-g----mdGleLlr~IR~~ 157 (770)
..+|.+||=++.+.+..++.+...+ -++. ...|+.+.+... ...||+||+|. -. . +.-.++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4689999999999999998876432 2343 556777766533 25799999997 32 2 1224666666543
No 211
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.09 E-value=1.1e+02 Score=33.66 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=54.5
Q ss_pred CcEEEEEecC--h---hhHHHHHHHHHhCCCEEEEECCHHHHHH--H-HHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004184 87 SLKVLLVEND--D---STRHVVAALLRNCGYEVTEATNGLQAWK--I-LEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (770)
Q Consensus 87 ~lrVLIVDDd--~---~~r~~L~~lLe~~G~eV~~A~dg~EALe--~-L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~ 158 (770)
..+|+||-.. + .....+..+|++.|+++.......+... . .......+|+||+= |.||. +++.++...
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~---GGDGT-~l~~~~~~~ 78 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL---GGDGT-VLAAARHLA 78 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE---CCcHH-HHHHHHHhc
Confidence 3457776321 2 3344566667788999875443322211 1 11112357777762 67773 444444332
Q ss_pred CCCCcchhhhhhHhcCCCcEEeCCCC-HHHHHHHHHHHHH
Q 004184 159 TRKNLPVIIFKCLSKGAVDFLVKPIR-KNELKNLWQHVWR 197 (770)
Q Consensus 159 ~~~~IPIIvl~al~aGAddyL~KP~~-~eeL~~~L~~vlr 197 (770)
...+||+.+.+ .|-.+||.-... .++ ..+|.++++
T Consensus 79 -~~~~pv~gin~--~G~lGFL~~~~~~~~~-~~~l~~i~~ 114 (305)
T PRK02645 79 -PHDIPILSVNV--GGHLGFLTHPRDLLQD-ESVWDRLQE 114 (305)
T ss_pred -cCCCCEEEEec--CCcceEecCchhhcch-HHHHHHHHc
Confidence 34678876543 257788885421 222 556666654
No 212
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=37.86 E-value=85 Score=35.56 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=38.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCcchh---------hhhhHhcCCCcEEeC
Q 004184 119 NGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVI---------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 119 dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~IPII---------vl~al~aGAddyL~K 181 (770)
+..+-++.|.+ ...|+|++|. -- ...-++++++||+.. +++||| +...+++|||...+=
T Consensus 108 ~~~er~~~L~~--agvD~ivID~a~g~s~~~~~~ik~ik~~~--~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 108 DDFERAEALVE--AGVDVIVIDSAHGHSEHVIDMIKKIKKKF--PDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp CHHHHHHHHHH--TT-SEEEEE-SSTTSHHHHHHHHHHHHHS--TTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHH--cCCCEEEccccCccHHHHHHHHHHHHHhC--CCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 34555666655 5789999998 42 233467889998764 588988 236688898886654
No 213
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=37.78 E-value=1e+02 Score=31.03 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=41.0
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCC
Q 004184 115 TEATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAV 176 (770)
Q Consensus 115 ~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg--------mdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAd 176 (770)
..+.+.+++.+.++ ..+|+|+++. .|. ..|+++++++.+.. +.+||+++ .++..|++
T Consensus 101 ~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 101 VSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGITLENAAEVLAAGAD 175 (196)
T ss_pred EeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCcCHHHHHHHHHcCCC
Confidence 37778888776443 4689999876 542 23789999887542 35788744 55677887
Q ss_pred cEE
Q 004184 177 DFL 179 (770)
Q Consensus 177 dyL 179 (770)
++.
T Consensus 176 gva 178 (196)
T TIGR00693 176 GVA 178 (196)
T ss_pred EEE
Confidence 764
No 214
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=37.76 E-value=73 Score=33.85 Aligned_cols=65 Identities=20% Similarity=0.172 Sum_probs=40.8
Q ss_pred cEEEEEecCh------hhHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHH
Q 004184 88 LKVLLVENDD------STRHVVAALLRNCGYEVTE-ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKI 154 (770)
Q Consensus 88 lrVLIVDDd~------~~r~~L~~lLe~~G~eV~~-A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~I 154 (770)
|+||++-... .....+...|.+.|++|.. +.+.......+.. ..||||.+-. ....-.+.++..+
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~ 73 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKL 73 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHH
Confidence 4777776553 3555677778888998874 3344445555555 7899998866 4444444444444
No 215
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=37.75 E-value=1.1e+02 Score=32.90 Aligned_cols=54 Identities=9% Similarity=0.231 Sum_probs=42.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~---~~~pDLVLlDi 141 (770)
.+|.-+|-++......+..|+..|+ .|. ...+..+.|..+... ...||+||+|.
T Consensus 105 g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 105 GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecC
Confidence 4799999999999999999998885 344 667777777766431 15799999998
No 216
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=37.33 E-value=1.1e+02 Score=40.16 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=58.5
Q ss_pred cEEEEE----ecChhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-C-CCCCH-HHHHHHHHhh
Q 004184 88 LKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-M-PCLSG-VALLSKIMSH 157 (770)
Q Consensus 88 lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-M-PgmdG-leLlr~IR~~ 157 (770)
.+|||. |-+..=..++.-+|+..||+|+-.. ..++.++.+.+ ..+|+|.+-. | +.+.. .++++.|++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e--~~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKE--ENADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--hCCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 478877 7788888888999999999998443 56788888887 8899999988 6 34444 4678888876
Q ss_pred cCCCCcchhh
Q 004184 158 KTRKNLPVII 167 (770)
Q Consensus 158 ~~~~~IPIIv 167 (770)
. ..+||++
T Consensus 830 g--~~v~v~v 837 (1229)
T PRK09490 830 G--FTIPLLI 837 (1229)
T ss_pred C--CCCeEEE
Confidence 4 4788773
No 217
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=36.87 E-value=1.7e+02 Score=30.33 Aligned_cols=67 Identities=12% Similarity=0.001 Sum_probs=44.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e-V~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~ 157 (770)
.+|..||-++...+.++.-++..++. +. ...+..+.+.. ....||+||+|- -...-..++++.|...
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---~~~~fDlV~~DPPy~~g~~~~~l~~l~~~ 146 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---PGTPHNVVFVDPPFRKGLLEETINLLEDN 146 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh---cCCCceEEEECCCCCCChHHHHHHHHHHC
Confidence 37899999999999999998887753 33 44555554432 124699999997 3222233566777653
No 218
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=36.82 E-value=51 Score=39.23 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=38.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg---~EALe~L~~~~~~pDLVLlDi 141 (770)
++|||||....+-..|.++|+..|+++.++.+. ...++.+.. ..||.||+--
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSp 56 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSP 56 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcC
Confidence 589999999999999999999999888766542 223444443 4577777754
No 219
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.58 E-value=2.8e+02 Score=33.64 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=60.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
..+++||-|-+. +..++.+.+..|+ .|.......+...++.. .|++++=..-+.-|..+++.+. ..+|
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~~EGfp~vlLEAMA-----~GlP 498 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSRYEGLPNVLIEAQM-----VGVP 498 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcccccCccHHHHHHHH-----hCCC
Confidence 456777776543 4556666666654 35555444455555543 5777663333444667777764 3578
Q ss_pred hhhh------hhHhcCCCcEEeCCCCHHHHHHHH
Q 004184 165 VIIF------KCLSKGAVDFLVKPIRKNELKNLW 192 (770)
Q Consensus 165 IIvl------~al~aGAddyL~KP~~~eeL~~~L 192 (770)
||+. +.+..|..+||..|.+...|...+
T Consensus 499 VVATdvGG~~EiV~dG~nG~LVp~~D~~aLa~ai 532 (578)
T PRK15490 499 VISTPAGGSAECFIEGVSGFILDDAQTVNLDQAC 532 (578)
T ss_pred EEEeCCCCcHHHcccCCcEEEECCCChhhHHHHH
Confidence 8843 456789999999999887776655
No 220
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.34 E-value=1.4e+02 Score=32.99 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=50.9
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCC----CCHHHHHHHHHhhcCCCCcchh---------
Q 004184 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPC----LSGVALLSKIMSHKTRKNLPVI--------- 166 (770)
Q Consensus 103 L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--MPg----mdGleLlr~IR~~~~~~~IPII--------- 166 (770)
+...|+..|..|. .+.+.++|..+.+ ..+|.|++.- ..+ ..-+.++.++++. .++|||
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 5556677788766 6788888876665 4589888853 222 2347888888864 258988
Q ss_pred -hhhhHhcCCCcEEeC
Q 004184 167 -IFKCLSKGAVDFLVK 181 (770)
Q Consensus 167 -vl~al~aGAddyL~K 181 (770)
+..++..||+.++.=
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 337788999987653
No 221
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=36.24 E-value=3e+02 Score=29.86 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh----
Q 004184 99 TRHVVAALLRNCGY---EVTEA---TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF---- 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~---eV~~A---~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl---- 168 (770)
..+.++.++...+. .++.. -+.++..+++.. .|++|+=...+.-|+.+++.+. ..+|||+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~~e~~g~~~lEA~a-----~G~PvI~s~~~~ 314 (388)
T TIGR02149 244 VAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSIYEPLGIVNLEAMA-----CGTPVVASATGG 314 (388)
T ss_pred HHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCccCCCChHHHHHHH-----cCCCEEEeCCCC
Confidence 34455555554432 13322 245556666644 5766653322334666666663 35688743
Q ss_pred --hhHhcCCCcEEeCCCCH------HHHHHHHHHHHH
Q 004184 169 --KCLSKGAVDFLVKPIRK------NELKNLWQHVWR 197 (770)
Q Consensus 169 --~al~aGAddyL~KP~~~------eeL~~~L~~vlr 197 (770)
+.+..+..+++.+|-+. ++|.+.|..++.
T Consensus 315 ~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 315 IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 44567888999999888 888888887764
No 222
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=35.86 E-value=29 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.078 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHhCCccccCCccCccccccccceeeec
Q 004184 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTAS 62 (770)
Q Consensus 26 ~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~ 62 (770)
...+++.++++++|.+.+.+..+. |+.++|+++
T Consensus 77 GL~~~~~~~~~~~g~l~~~~~~~~----gt~v~~~~p 109 (111)
T PF02518_consen 77 GLYIVKQIAERHGGELTIESSEGG----GTTVTFTLP 109 (111)
T ss_dssp HHHHHHHHHHHTTEEEEEEEETTT----EEEEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCC----cEEEEEEEE
Confidence 378999999999999888776654 455555544
No 223
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=35.68 E-value=1.7e+02 Score=32.06 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=47.9
Q ss_pred cEEEEEecCh----hhHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDD----STRHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~----~~r~~L~~lLe~~G~eV~~-------A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
.+|.|+-++. ...+.++..|+..|.+|+. ..|....+..|+. ..+|+||+=. .+.+...+++.+++
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~--~~pd~v~~~~-~~~~~~~~~~~~~~ 210 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKA--AKPDVVVSTV-NGDSNVAFFKQLKA 210 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHH--hCCCEEEEec-cCCchHHHHHHHHH
Confidence 4565554433 4556667788888988763 2234555666665 6799988733 34456788999988
Q ss_pred hcCCCC-cchh
Q 004184 157 HKTRKN-LPVI 166 (770)
Q Consensus 157 ~~~~~~-IPII 166 (770)
...... ++++
T Consensus 211 ~G~~~~~~~~~ 221 (348)
T cd06355 211 AGITASKVPVL 221 (348)
T ss_pred cCCCccCCeeE
Confidence 764432 4554
No 224
>PRK10742 putative methyltransferase; Provisional
Probab=35.51 E-value=2.6e+02 Score=30.35 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=40.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC------GY----EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCL 145 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~------G~----eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgm 145 (770)
+.+|..||-++.+..+|+.-|+.. +. ++. ...+..+.|..+ ...||+|++|- .|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCC
Confidence 567999999999999999999874 21 232 445656555543 24699999999 6753
No 225
>PRK10815 sensor protein PhoQ; Provisional
Probab=35.41 E-value=38 Score=39.39 Aligned_cols=57 Identities=11% Similarity=-0.109 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHhhhc--------CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 3 VDGKADKRLQELNHCLQA--------GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 3 ~~g~g~~r~~~L~~~l~~--------~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
|+|+|.. ...+.+.|.+ .+..-..+|++++++.+||.+.+.+..+ .|++|++.++.+
T Consensus 415 D~G~GI~-~e~~~~iF~~f~~~~~~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~------~Gt~f~i~lp~~ 479 (485)
T PRK10815 415 DDGPGIP-ESKRELIFDRGQRADTLRPGQGLGLSVAREITEQYEGKISAGDSPL------GGARMEVIFGRQ 479 (485)
T ss_pred ECCCCcC-HHHHHHHhCCcccCCCCCCCcchhHHHHHHHHHHcCCEEEEEECCC------CEEEEEEEEcCC
Confidence 5677764 2234444422 1234458999999999999998876654 455566655543
No 226
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=35.29 E-value=2.3e+02 Score=33.22 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=53.6
Q ss_pred CCcEEEEEecC----hhhHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CC
Q 004184 86 RSLKVLLVEND----DSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LS 146 (770)
Q Consensus 86 ~~lrVLIVDDd----~~~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPg------------md 146 (770)
.+..+|+||.. ......++.+-..+ +..|+ .+.+.++|..++.. .+|+|.+-+-|+ ..
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g~gs~~~~r~~~~~g~p 315 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIGPGSICTTRIVAGVGVP 315 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCCCCccccceeecCCCcC
Confidence 45678888854 12334444444444 44433 66778888887763 467775422121 12
Q ss_pred HHHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 147 GVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
-++++..+++......+||| +++|+.+||+..+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 316 QITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 34555555443222468888 55999999998764
No 227
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=35.25 E-value=83 Score=30.84 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCCCEEE---EECCHHHHH-HHHHhcCC--CceEEEEcc
Q 004184 99 TRHVVAALLRNCGYEVT---EATNGLQAW-KILEDLTN--HIDLVLTEV 141 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~---~A~dg~EAL-e~L~~~~~--~pDLVLlDi 141 (770)
+...|..+|+++|+++. .+.|-.+.+ +.+++... .+|+||+-=
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittG 69 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTG 69 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 56688999999998866 344544433 33433223 689999864
No 228
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=34.98 E-value=60 Score=32.85 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=50.6
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCcchhhh------
Q 004184 103 VAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIIF------ 168 (770)
Q Consensus 103 L~~lLe~~G~eV~~--A~dg~EALe~L~~~~~~pDLVLlDi-M-Pgm----dGleLlr~IR~~~~~~~IPIIvl------ 168 (770)
+...|+..||.+.. +..+...++.+.. ..||.|-+|. + -.+ ....+++.|........++||+-
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~--~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~ 214 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKR--LPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEE 214 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHh--CCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHH
Confidence 44556778998875 4566777788876 6799999996 3 232 23455655544332345666632
Q ss_pred ---hhHhcCCCc----EEeCCCCH
Q 004184 169 ---KCLSKGAVD----FLVKPIRK 185 (770)
Q Consensus 169 ---~al~aGAdd----yL~KP~~~ 185 (770)
.+...|++. |+.||...
T Consensus 215 ~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 215 QLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHcCCCeeeeceeccCCCC
Confidence 456677742 56677654
No 229
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=34.94 E-value=2e+02 Score=30.93 Aligned_cols=99 Identities=9% Similarity=0.103 Sum_probs=58.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIv 167 (770)
.+++||.+.+.. +.+...+ .....+.-.-+.++..+++.. .|++|+-.. +.-|+-+++.+. ..+|||+
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~-e~~g~~~~Eama-----~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE-EDFGIVPVEAMA-----SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc-CCCCchHHHHHH-----cCCCEEE
Confidence 567777766543 2233311 112233333355666677654 466554323 333555666553 3467775
Q ss_pred h------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 168 F------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 168 l------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
. ..+..|..+++..|-+.++|.++|..++..
T Consensus 290 ~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGGALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 4 334556778999999999999999888764
No 230
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=34.81 E-value=1.2e+02 Score=30.48 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=49.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEAT-------NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~--G~eV~~A~-------dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
...+|.++-..+.+.+.+...|+.. |..++.+. +..+.++.+.. ..||+||+-+ +|... .++.+++
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 120 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPKQE--LWIARHK 120 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 4578999999999999988888765 56665432 22335677776 7899999999 99755 3555665
Q ss_pred hh
Q 004184 156 SH 157 (770)
Q Consensus 156 ~~ 157 (770)
..
T Consensus 121 ~~ 122 (171)
T cd06533 121 DR 122 (171)
T ss_pred HH
Confidence 44
No 231
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.76 E-value=1.3e+02 Score=35.05 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=37.6
Q ss_pred CCcEEEEEecChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+|++-|..- ...++.+.+..|+.+..+.+..++.+.+.. ..+|+||+|.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDT 307 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDT 307 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeC
Confidence 45689999988622 233444445557777766677777777765 6799999997
No 232
>PLN02476 O-methyltransferase
Probab=34.72 E-value=1.2e+02 Score=33.30 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=41.7
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~--~~~pDLVLlDi 141 (770)
+|+-+|-++...+..+..++..|+. |. ...+..+.|..+... ...||+||+|.
T Consensus 145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECC
Confidence 6889999999999999999999874 44 566777777665321 24799999997
No 233
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=34.53 E-value=1.1e+02 Score=33.50 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=46.1
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC--C---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-----CCHHHHHHHH
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG--Y---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-----LSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G--~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-----mdGleLlr~I 154 (770)
.-+|.+||=|+.+.++.+..|.... . +|. ...||.+-++.. ...||+||+|. -|. ..-.++.+.+
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~---~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~ 176 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC---EEKFDVIIVDSTDPVGPAEALFTEEFYEGC 176 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC---CCcCCEEEEcCCCCCCcccccCCHHHHHHH
Confidence 3479999999999999999997653 2 232 555655554443 34799999999 662 1224666666
Q ss_pred Hhh
Q 004184 155 MSH 157 (770)
Q Consensus 155 R~~ 157 (770)
++.
T Consensus 177 ~~~ 179 (282)
T COG0421 177 RRA 179 (282)
T ss_pred HHh
Confidence 554
No 234
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=34.04 E-value=23 Score=37.15 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCC---HHHHHHHHHHHHHHhhcC
Q 004184 132 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIR---KNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 132 ~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~---~eeL~~~L~~vlrr~~~~ 202 (770)
..+|+|+.|..|.+.|...+..+|.........-++...+. .--.||.|=|. .++++..+++..+.....
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~ 182 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQGEDFEDLLKALRRLFRKVKIF 182 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeCCCHHHHHHHHHHhhceeEEe
Confidence 34699999999999998887777754311111111112222 23347777664 566666676666654433
No 235
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=34.02 E-value=1.3e+02 Score=35.72 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCceEEEEccCCCC--CHHHHHHHHHhhcCCCCcchhh---------hhhHhcCCCcEEe
Q 004184 121 LQAWKILEDLTNHIDLVLTEVMPCL--SGVALLSKIMSHKTRKNLPVII---------FKCLSKGAVDFLV 180 (770)
Q Consensus 121 ~EALe~L~~~~~~pDLVLlDiMPgm--dGleLlr~IR~~~~~~~IPIIv---------l~al~aGAddyL~ 180 (770)
.+=.+.|-+ ...|+|++|.-.+. .-++++++||+.. +.++||+ ..++++|||.+.+
T Consensus 250 ~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~~--p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 250 KERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKTY--PELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHhC--CCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 333344444 56999999992232 3358999998753 5677762 3778999998754
No 236
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.97 E-value=1.4e+02 Score=28.37 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=45.1
Q ss_pred CCceEEEEcc--CCCCCHHHHHHHHHhh-cCCCCcchh-------hhhhHhcCCCcEEeCC-CCHHHHHHHHHHHHHHh
Q 004184 132 NHIDLVLTEV--MPCLSGVALLSKIMSH-KTRKNLPVI-------IFKCLSKGAVDFLVKP-IRKNELKNLWQHVWRRC 199 (770)
Q Consensus 132 ~~pDLVLlDi--MPgmdGleLlr~IR~~-~~~~~IPII-------vl~al~aGAddyL~KP-~~~eeL~~~L~~vlrr~ 199 (770)
...+||.++. .-+.-|+.+.+.||+. .....+..+ +.-....|++.|.++. ..++.....+...-..+
T Consensus 18 ~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~fs~~Y 96 (110)
T PF06073_consen 18 DRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDFSVSY 96 (110)
T ss_pred cCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhCCccc
Confidence 4578888887 5677789999999943 333344333 2356789999998885 66666666555444333
No 237
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=33.72 E-value=1.1e+02 Score=32.52 Aligned_cols=105 Identities=16% Similarity=0.202 Sum_probs=66.3
Q ss_pred CcEEEEEecCh----hhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-CC----CCHHHHHHHH
Q 004184 87 SLKVLLVENDD----STRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PC----LSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~----~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-M-Pg----mdGleLlr~I 154 (770)
.+.+-|.|... .....+-..|+..|+.+. -+.+|-..+..|.. .+||+|=+|- + -. .....+++.|
T Consensus 121 ~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~i 198 (256)
T COG2200 121 RLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAI 198 (256)
T ss_pred eEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHH
Confidence 34444555433 133445556677888765 78899999999998 8899999996 3 22 2233455555
Q ss_pred HhhcCCCCcchhhh---------hhHhcCCCc----EEeCCCCHHHHHHHHH
Q 004184 155 MSHKTRKNLPVIIF---------KCLSKGAVD----FLVKPIRKNELKNLWQ 193 (770)
Q Consensus 155 R~~~~~~~IPIIvl---------~al~aGAdd----yL~KP~~~eeL~~~L~ 193 (770)
-.....-.+.||+- .+.+.|++. |+.||+..+++...+.
T Consensus 199 v~la~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 199 VALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred HHHHHHCCCEEEEeecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 44332334555521 446677763 5889999877776654
No 238
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=33.70 E-value=3.5e+02 Score=28.33 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 121 LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 121 ~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
.+..+++.. .|++++=. ..+.-|+.+++.+. ..+|||+. +.+..|..+||..+ .++|..+|.
T Consensus 235 ~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma-----~G~PvI~~~~~~~~e~i~~~~~g~l~~~--~~~l~~~l~ 303 (335)
T cd03802 235 AEKAELLGN----ARALLFPILWEEPFGLVMIEAMA-----CGTPVIAFRRGAVPEVVEDGVTGFLVDS--VEELAAAVA 303 (335)
T ss_pred HHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh-----cCCCEEEeCCCCchhheeCCCcEEEeCC--HHHHHHHHH
Confidence 344444443 46666544 34445666666663 24677743 44566778899987 888998888
Q ss_pred HHH
Q 004184 194 HVW 196 (770)
Q Consensus 194 ~vl 196 (770)
.++
T Consensus 304 ~l~ 306 (335)
T cd03802 304 RAD 306 (335)
T ss_pred HHh
Confidence 774
No 239
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=33.56 E-value=1.4e+02 Score=29.22 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=42.3
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC--------CCHHHHHHHHHhhcCCCCcchhhh---------hhH
Q 004184 111 GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC--------LSGVALLSKIMSHKTRKNLPVIIF---------KCL 171 (770)
Q Consensus 111 G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg--------mdGleLlr~IR~~~~~~~IPIIvl---------~al 171 (770)
+..+- .+.+..++.+.+. ..+|+|++.. .|. ..+++.++++++. ..+||++. .++
T Consensus 95 ~~~~g~~~~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~~~~i~~~~ 168 (196)
T cd00564 95 DLIIGVSTHSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGITPENAAEVL 168 (196)
T ss_pred CCEEEeeCCCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCCHHHHHHHH
Confidence 44443 4567777776654 3589999876 553 3467888888764 45788743 667
Q ss_pred hcCCCcEEe
Q 004184 172 SKGAVDFLV 180 (770)
Q Consensus 172 ~aGAddyL~ 180 (770)
..|++.+..
T Consensus 169 ~~Ga~~i~~ 177 (196)
T cd00564 169 AAGADGVAV 177 (196)
T ss_pred HcCCCEEEE
Confidence 788887643
No 240
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=33.50 E-value=1.5e+02 Score=32.50 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=39.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEE
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-----EATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-----~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
+-+||=+|-|+..++....+-+++|..+. .-.-.+...++|++ ..|||+++
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlVi 159 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEE--VRPDILVI 159 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHH--hCCCEEEE
Confidence 45899999999999998888888876655 33345566777877 88998776
No 241
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.25 E-value=1.5e+02 Score=29.80 Aligned_cols=68 Identities=15% Similarity=0.217 Sum_probs=49.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEATN-------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~--G~eV~~A~d-------g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
...+|.++-..+...+.+...|+.. |..++-+.+ .++.++.+.. ..+||||+-+ +|... .++.+++
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 4568999999999999888888865 667774444 3455666666 7899999999 88644 4566665
Q ss_pred hh
Q 004184 156 SH 157 (770)
Q Consensus 156 ~~ 157 (770)
..
T Consensus 123 ~~ 124 (172)
T PF03808_consen 123 QR 124 (172)
T ss_pred HH
Confidence 54
No 242
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=33.20 E-value=1.2e+02 Score=36.72 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-CCC----CHHHHHHHHHhhcCCCCcchhhh-----
Q 004184 102 VVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PCL----SGVALLSKIMSHKTRKNLPVIIF----- 168 (770)
Q Consensus 102 ~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-M-Pgm----dGleLlr~IR~~~~~~~IPIIvl----- 168 (770)
.....|+..||.+. -+.++...+..|.. -.+|.|-+|. + -+. ....+++.|........+.||+-
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~via~gVe~~ 759 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAEGVETK 759 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 34456778899886 46688888888887 7799999997 4 322 23445665544322345666632
Q ss_pred ----hhHhcCCCc----EEeCCCCHHHHHHHHHHH
Q 004184 169 ----KCLSKGAVD----FLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 ----~al~aGAdd----yL~KP~~~eeL~~~L~~v 195 (770)
.+.+.|++. |+.||...++|...|+.+
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~~ 794 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSV 794 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHhc
Confidence 456778863 688999999999866543
No 243
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=33.16 E-value=2.7e+02 Score=32.97 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=16.1
Q ss_pred CCcchh----------hhhhHhcCCCcEEeC
Q 004184 161 KNLPVI----------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 161 ~~IPII----------vl~al~aGAddyL~K 181 (770)
..+||| +++|+.+||+.++.=
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 357888 458999999987754
No 244
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.78 E-value=2.7e+02 Score=29.98 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhH
Q 004184 21 GSKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTR 100 (770)
Q Consensus 21 ~~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r 100 (770)
.-..+...++.-++++++..+.+ ++|+.+.- +.+.+.+.+ | ..-+|+-+|=|+...
T Consensus 56 ~v~~d~g~fl~~li~~~~ak~~l--elGvfTGy---SaL~~Alal------p-------------~dGrv~a~eid~~~~ 111 (237)
T KOG1663|consen 56 LVGPDKGQFLQMLIRLLNAKRTL--ELGVFTGY---SALAVALAL------P-------------EDGRVVAIEIDADAY 111 (237)
T ss_pred ecChHHHHHHHHHHHHhCCceEE--EEecccCH---HHHHHHHhc------C-------------CCceEEEEecChHHH
Confidence 33455578888999999999888 77762211 111111111 0 134799999999999
Q ss_pred HHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc--CCCceEEEEcc
Q 004184 101 HVVAALLRNCGY--EVT-EATNGLQAWKILEDL--TNHIDLVLTEV 141 (770)
Q Consensus 101 ~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~--~~~pDLVLlDi 141 (770)
+.-..+.+..|. .|. ....+.+.|+.+... ...||++|+|.
T Consensus 112 ~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDa 157 (237)
T KOG1663|consen 112 EIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDA 157 (237)
T ss_pred HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEcc
Confidence 888888877763 454 556677777776653 45799999997
No 245
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=32.65 E-value=80 Score=39.81 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=7.7
Q ss_pred CCCCccccccccccCCCC
Q 004184 646 GNAGNYSINGSASGSNHG 663 (770)
Q Consensus 646 g~a~n~~~~~s~~~s~~g 663 (770)
|..++|+.+|-.+|.+.|
T Consensus 1193 GYGggys~gGygsGGYGg 1210 (1282)
T KOG0921|consen 1193 GYGGGYSGGGYGSGGYGG 1210 (1282)
T ss_pred CcCCCCCCCCcCCCCCCC
Confidence 334455544444444333
No 246
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=32.43 E-value=4.3e+02 Score=27.80 Aligned_cols=102 Identities=21% Similarity=0.274 Sum_probs=59.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEA--TNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A--~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLlr~IR~ 156 (770)
.++++|+-+.+. ...+..+++..+. .|... -+.++...++.. .|++|+-. -+ +.-|..+++.+.
T Consensus 210 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a- 283 (355)
T cd03799 210 DFRLDIVGDGPL-RDELEALIAELGLEDRVTLLGAKSQEEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA- 283 (355)
T ss_pred CeEEEEEECCcc-HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH-
Confidence 345556654433 3444555554432 23322 233566666654 56666543 21 223556666653
Q ss_pred hcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 157 ~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..+|||+. ..+..+..+|+..|-+.++|.++|..++..
T Consensus 284 ----~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 284 ----MGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred ----cCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhC
Confidence 35677744 345667789999999999999999988753
No 247
>PRK14098 glycogen synthase; Provisional
Probab=32.29 E-value=5e+02 Score=30.40 Aligned_cols=104 Identities=7% Similarity=0.076 Sum_probs=56.9
Q ss_pred CcEEEEEecCh-hhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDD-STRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~-~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
..+++|+-+-+ .....|+++.+..+-.|. ..-+..++.+++.. .|++|+=...+.-|+..++.++. .+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS~~E~~Gl~~lEAma~-----G~ 406 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPGKIESCGMLQMFAMSY-----GT 406 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCCCCCCchHHHHHHHhC-----CC
Confidence 35566665433 234555555554432332 22233444444433 56666533333446666666653 23
Q ss_pred chhhh------hhH----hcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF------KCL----SKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl------~al----~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+|+. ..+ ..+..+|+..|.+.++|..+|.+++...
T Consensus 407 ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~ 452 (489)
T PRK14098 407 IPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALY 452 (489)
T ss_pred CeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHH
Confidence 33322 111 1256889999999999999999877543
No 248
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.21 E-value=1.1e+02 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=36.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
+++|.|||----+...+...|+..|+ ++....+.+++ ..+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 36899999888888999999999999 78888776652 34788887
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=32.15 E-value=1.8e+02 Score=33.68 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCcEEEEEecChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+||+-|+.- .+.|..+-+..++.+..+.+..+....+... ..+|+||+|.
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt 307 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDT 307 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeC
Confidence 35789999988742 2345555556677777777777777666642 4689999997
No 250
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=31.71 E-value=1.4e+02 Score=29.39 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCcEEEEEecChhh---------HHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 86 RSLKVLLVENDDST---------RHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 86 ~~lrVLIVDDd~~~---------r~~L~~lLe~~-G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
..+.|.|||.|... -..+.+.|+.. .|.+.. .+.++|.+.+.. ..++.+|+
T Consensus 42 ~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~--g~~~~~iv 102 (164)
T TIGR03061 42 DNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLAD--GKYYMVIT 102 (164)
T ss_pred CCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHc--CcEEEEEE
Confidence 45789999888765 34445555543 455544 489999999987 77777654
No 251
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=31.21 E-value=39 Score=36.75 Aligned_cols=36 Identities=6% Similarity=-0.152 Sum_probs=26.7
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
-..+|++++++.+||.+.+++..+. .|++|++.+|.
T Consensus 315 lGL~i~~~i~~~~gg~i~i~s~~~~-----~Gt~~~i~~p~ 350 (356)
T PRK10755 315 LGLSIVSRITQLHHGQFFLQNRQER-----SGTRAWVWLPK 350 (356)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCC-----CeEEEEEEecC
Confidence 3588999999999999888776641 45566666653
No 252
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=31.08 E-value=1.5e+02 Score=28.23 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHHhcCCCceEEEEcc
Q 004184 98 STRHVVAALLRNCGYEVTE---ATNGLQAW-KILEDLTNHIDLVLTEV 141 (770)
Q Consensus 98 ~~r~~L~~lLe~~G~eV~~---A~dg~EAL-e~L~~~~~~pDLVLlDi 141 (770)
.+...|..+|+++|+++.. +.|-.+++ +.+.+.-..+||||+-=
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittG 66 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTG 66 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECC
Confidence 3567889999999998763 34444333 33333223489999864
No 253
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.97 E-value=1.7e+02 Score=31.97 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHH-------HHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhc
Q 004184 101 HVVAALLRNCGYEVTEATNGLQAWKI-------LEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSK 173 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~dg~EALe~-------L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~a 173 (770)
..+..+|++.|+++.........+.. .......+|+||+ -|.|| .+++..|... ...+||+-+ ..
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~---iGGDG-T~L~aa~~~~-~~~~PilgI---n~ 74 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIV---IGGDG-NMLGRARVLA-KYDIPLIGI---NR 74 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEE---ECCcH-HHHHHHHHhc-cCCCcEEEE---eC
Confidence 45667788888888765433222110 0111124677766 36777 3555555432 346888744 45
Q ss_pred CCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 174 GAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 174 GAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|-.+||. .++++++...|..++.
T Consensus 75 G~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 75 GNLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCcccc-cCCHHHHHHHHHHHHh
Confidence 8888988 5889999999988887
No 254
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=30.95 E-value=1e+02 Score=32.82 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCcEEEEEecC-hhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 86 RSLKVLLVEND-DSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 86 ~~lrVLIVDDd-~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
...+|=.|... ......|.+.|.++||+|. ++++...|..++++...+|-+|+-|- |++.+|++. ..
T Consensus 38 ~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT--------s~ 109 (262)
T KOG3040|consen 38 QHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT--------SD 109 (262)
T ss_pred cCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC--------CC
Confidence 34566555543 4456677888889999886 77888889999988777888999998 999998643 23
Q ss_pred CCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 161 KNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 161 ~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++..||- ...+-|+.+.|-++.+-++..
T Consensus 110 pn~VVig----------lape~F~y~~ln~AFrvL~e~ 137 (262)
T KOG3040|consen 110 PNCVVIG----------LAPEGFSYQRLNRAFRVLLEM 137 (262)
T ss_pred CCeEEEe----------cCcccccHHHHHHHHHHHHcC
Confidence 5665552 235567888888887777654
No 255
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=30.88 E-value=1.3e+02 Score=32.74 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=37.6
Q ss_pred CcEEEEEecChh---hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..+|.||+-|+. ..+.+..+-+..|+.+..+.+..+..+.+... ..+|+||+|.
T Consensus 224 ~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 224 NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 368999988863 23445555555677777777877776666653 4589999995
No 256
>PRK12704 phosphodiesterase; Provisional
Probab=30.88 E-value=41 Score=39.89 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=38.1
Q ss_pred CceEEEEcc--CCCCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 133 HIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 133 ~pDLVLlDi--MPgmdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+||||-|. .--++|++-+++= |...+++.++.|++.||++.+++...++.-+.+.
T Consensus 241 gvd~iiddtp~~v~ls~~~~~rre-----------~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 241 GVDLIIDDTPEAVILSGFDPIRRE-----------IARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred CCeEEEcCCCCeEEEecCChhhHH-----------HHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 377777775 1124454433311 2346778889999999999999999988777643
No 257
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.85 E-value=2.3e+02 Score=26.52 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=54.2
Q ss_pred EEEEEecCh----hhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 89 KVLLVENDD----STRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 89 rVLIVDDd~----~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
+|||+=-.- .+...++++++..|+++. .+.+..+.-..+.. ..+|+||+-- .. --....+++.....++
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~--~~~DvIll~P--Qi--~~~~~~i~~~~~~~~i 76 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAA--AEYDLYLVSP--QT--KMYFKQFEEAGAKVGK 76 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhcc--CCCCEEEECh--HH--HHHHHHHHHHhhhcCC
Confidence 566654433 344556777788898776 44455554444433 5689999853 10 1123344433223578
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHH
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQH 194 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~ 194 (770)
||.++.. .+|-.-|++.+++...|..
T Consensus 77 pv~~I~~-----~~Y~~~~~~~~~~~~~~~~ 102 (104)
T PRK09590 77 PVVQIPP-----QAYIPIPMGIEKMAKLILE 102 (104)
T ss_pred CEEEeCH-----HHcCCCccCHHHHHHHHHh
Confidence 8886543 3455557888887776653
No 258
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=30.56 E-value=3.2e+02 Score=28.21 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=48.0
Q ss_pred HHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C------CCCCHHHHHHHHHhhcCCCCcchhh--
Q 004184 100 RHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVII-- 167 (770)
Q Consensus 100 r~~L~~lLe~-~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M------PgmdGleLlr~IR~~~~~~~IPIIv-- 167 (770)
...+...+++ .++.+. .+.+.+++..+.. ..+|+|.+.. . .....++++++|+... .+|||+
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~G 180 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEG 180 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEEC
Confidence 3344455555 676665 6677888865544 4588886632 1 1223478888888752 588883
Q ss_pred --------hhhHhcCCCcEEeC
Q 004184 168 --------FKCLSKGAVDFLVK 181 (770)
Q Consensus 168 --------l~al~aGAddyL~K 181 (770)
.++++.||+.++.=
T Consensus 181 GI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 181 RINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 26788999887543
No 259
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=30.52 E-value=91 Score=38.57 Aligned_cols=75 Identities=27% Similarity=0.394 Sum_probs=48.1
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--C-CC-CCHHHHHHHHHhhcCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--M-PC-LSGVALLSKIMSHKTR 160 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--M-Pg-mdGleLlr~IR~~~~~ 160 (770)
..+.+|||||-...+...|..+|+..|+++.++.... ..+.+.. ..||.||+-- + |. .+-.++++++. .
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~~----~ 586 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAAL----A 586 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHHH----H
Confidence 3567999999998888999999999999988665432 1222332 4588887732 2 21 12234444432 2
Q ss_pred CCcchh
Q 004184 161 KNLPVI 166 (770)
Q Consensus 161 ~~IPII 166 (770)
..+||+
T Consensus 587 ~~iPvL 592 (717)
T TIGR01815 587 RGLPVF 592 (717)
T ss_pred CCCCEE
Confidence 468888
No 260
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.38 E-value=3e+02 Score=27.59 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=52.1
Q ss_pred EEEEEecC--hhhHHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEcc--CC----CCCHHHHHHHHHh
Q 004184 89 KVLLVEND--DSTRHVVAALLRNCGYEVT----EATNGLQAWKILEDLTNHIDLVLTEV--MP----CLSGVALLSKIMS 156 (770)
Q Consensus 89 rVLIVDDd--~~~r~~L~~lLe~~G~eV~----~A~dg~EALe~L~~~~~~pDLVLlDi--MP----gmdGleLlr~IR~ 156 (770)
..+++.+. +.....+...+++.|..+. .+.+..++++.+. ...|+|++.. .+ ...+.+.++++++
T Consensus 79 d~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (202)
T cd04726 79 DIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKVKK 155 (202)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHHHh
Confidence 34444333 2234445566667776654 5557888887443 4678888753 22 2455777787775
Q ss_pred hcCCCCcchhh---------hhhHhcCCCcEEe
Q 004184 157 HKTRKNLPVII---------FKCLSKGAVDFLV 180 (770)
Q Consensus 157 ~~~~~~IPIIv---------l~al~aGAddyL~ 180 (770)
. .++||++ ..+++.||+.++.
T Consensus 156 ~---~~~~i~~~GGI~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 156 L---LGVKVAVAGGITPDTLPEFKKAGADIVIV 185 (202)
T ss_pred h---cCCCEEEECCcCHHHHHHHHhcCCCEEEE
Confidence 4 3567763 2778889987643
No 261
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=30.36 E-value=3e+02 Score=28.41 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcCCCce-EEEEcc-CCC-CCH--HHHHHHHHhhcCCCCcchhh----------hhhHhcCCCcEEe
Q 004184 119 NGLQAWKILEDLTNHID-LVLTEV-MPC-LSG--VALLSKIMSHKTRKNLPVII----------FKCLSKGAVDFLV 180 (770)
Q Consensus 119 dg~EALe~L~~~~~~pD-LVLlDi-MPg-mdG--leLlr~IR~~~~~~~IPIIv----------l~al~aGAddyL~ 180 (770)
+..+.++.+.+ ..++ |+++|+ --+ +.| ++++++|++. ..+|||+ .+++..||++++.
T Consensus 146 ~~~~~~~~~~~--~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEE--LGLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHh--CCCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44556666665 4566 777877 322 223 6788888765 4688883 3567788888764
No 262
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=30.29 E-value=3.3e+02 Score=28.77 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=58.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
.++++|+.+.+. ...+..+++..+. .|.......+..+++.. .|++|+-...+.-|..+++.+. ..+|
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e~~~~~~~Ea~a-----~G~P 288 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWEGFGLVVAEAMA-----CELP 288 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccccCCChHHHHHHH-----cCCC
Confidence 356777766543 3445555555442 34444444455555543 4666654421223566777664 2467
Q ss_pred hhhhh------hHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 165 VIIFK------CLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 165 IIvl~------al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
||+.. .+.. .+++..|.+.++|.+.|..++.
T Consensus 289 vI~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 289 VVATDAGGVREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred EEEecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 77431 1111 5678889999999999999874
No 263
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=30.18 E-value=1.3e+02 Score=29.91 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=43.5
Q ss_pred EEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH---HHHHHHHHhhcCCCCcch
Q 004184 91 LLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG---VALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 91 LIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdG---leLlr~IR~~~~~~~IPI 165 (770)
||||-...+...|...|++.|+++....--.+....+.. ...+|.||+-- +...+- .++++++++ ..+||
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~----~~~Pi 75 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLED-LDDYDGIIISGGPGSPYDIEGLIELIREARE----RKIPI 75 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHH-TTTSSEEEEECESSSTTSHHHHHHHHHHHHH----TTSEE
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhh-hcCCCEEEECCcCCccccccccccccccccc----cceEE
Confidence 789999999999999999999877655433222222211 15677666643 322332 233444433 57898
Q ss_pred h
Q 004184 166 I 166 (770)
Q Consensus 166 I 166 (770)
+
T Consensus 76 l 76 (192)
T PF00117_consen 76 L 76 (192)
T ss_dssp E
T ss_pred E
Confidence 8
No 264
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.95 E-value=1.8e+02 Score=33.81 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=38.3
Q ss_pred CCcEEEEEecChh---hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEcc
Q 004184 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~--~~pDLVLlDi 141 (770)
.+.+|++|+-|.. ..+.|+.+.+..|+.+..+.+..+..+.+.... ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4568999988764 334455555567888887777776655554321 2589999998
No 265
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=29.87 E-value=1.5e+02 Score=32.74 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=38.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE--EEC---CHHHHHHHHHhcCCCceEEEE
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT--EAT---NGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~--~A~---dg~EALe~L~~~~~~pDLVLl 139 (770)
+-+||=+|-|+..++.-..+-+++|..+. .+. -.+...++|.+ ..||||++
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~--~~PDIlVi 160 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEE--YRPDILVI 160 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHH--cCCCEEEE
Confidence 35899999999999998888888887765 232 23445667776 88998776
No 266
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=29.84 E-value=1e+02 Score=31.19 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEcc-C-CCC--C--HHHHHHHHHhhcCCCCcchhhh-----
Q 004184 102 VVAALLRNCGYEVTE--ATNGLQAWKILEDLTNHIDLVLTEV-M-PCL--S--GVALLSKIMSHKTRKNLPVIIF----- 168 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~--A~dg~EALe~L~~~~~~pDLVLlDi-M-Pgm--d--GleLlr~IR~~~~~~~IPIIvl----- 168 (770)
.....|+..||.+.. +..+..-+..+.. ..||.|-+|. + ... + ...+++.|........+.||+-
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~--l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~ 214 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKR--LPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHh--CCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH
Confidence 445566788998764 4556677778876 6799999996 3 222 1 3345555544332345666632
Q ss_pred ----hhHhcCCCc----EEeCCCCH
Q 004184 169 ----KCLSKGAVD----FLVKPIRK 185 (770)
Q Consensus 169 ----~al~aGAdd----yL~KP~~~ 185 (770)
.+...|++. |+.||...
T Consensus 215 ~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 215 EQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHcCCCEEeeceeccCCCC
Confidence 456667752 56777654
No 267
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=29.65 E-value=45 Score=37.27 Aligned_cols=36 Identities=14% Similarity=-0.180 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.-..+|++++++.+||.+.+.+..+ .|++|++.+|.
T Consensus 422 GlGL~iv~~~v~~~~G~l~~~s~~~------~Gt~~~i~lp~ 457 (461)
T PRK09470 422 GLGLAIVENAIQQHRGWVKAEDSPL------GGLRLTIWLPL 457 (461)
T ss_pred chhHHHHHHHHHHCCCEEEEEECCC------CeEEEEEEeeC
Confidence 3458999999999999988866554 45556555554
No 268
>PRK01581 speE spermidine synthase; Validated
Probab=29.62 E-value=1.7e+02 Score=33.59 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=42.9
Q ss_pred cEEEEEecChhhHHHHHHH--HH---hC---CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC------HHHHH
Q 004184 88 LKVLLVENDDSTRHVVAAL--LR---NC---GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS------GVALL 151 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~l--Le---~~---G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmd------GleLl 151 (770)
.+|.+||=|+.+.++.+.+ |. .. +-++. .+.|+.+.+... ...||+||+|+ -|... ..+++
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl~DP~~~~~~~LyT~EFy 251 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDFPDPATELLSTLYTSELF 251 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCCccEEEEcCCCccccchhhhhHHHHH
Confidence 5899999999998888862 22 11 22444 567777766543 35799999998 55322 23455
Q ss_pred HHHHhh
Q 004184 152 SKIMSH 157 (770)
Q Consensus 152 r~IR~~ 157 (770)
+.++..
T Consensus 252 ~~~~~~ 257 (374)
T PRK01581 252 ARIATF 257 (374)
T ss_pred HHHHHh
Confidence 565543
No 269
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=29.55 E-value=2.5e+02 Score=30.44 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCcEEEEEecChh---hHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~dg-------~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+||+-|.. ..+.++.+.+..|..+.....+ .+++..+.. ..+|+||+|.
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT 162 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDT 162 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeC
Confidence 4578999997753 2345666667778766543322 233444444 6799999998
No 270
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=29.40 E-value=1.9e+02 Score=31.17 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCCCcchhhh----------------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF----------------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl----------------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
.++++++||+. ..++|+|++ .|.++|+++.|+-.+.+++....+..+-
T Consensus 76 ~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 76 VFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 46677777743 356787643 6778999999998888887776665553
No 271
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.33 E-value=2.1e+02 Score=31.35 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=59.9
Q ss_pred cEEEEEec-ChhhH---HHHHHHHHhCCCEEEEECCHHHHHHHH----HhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004184 88 LKVLLVEN-DDSTR---HVVAALLRNCGYEVTEATNGLQAWKIL----EDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (770)
Q Consensus 88 lrVLIVDD-d~~~r---~~L~~lLe~~G~eV~~A~dg~EALe~L----~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~ 159 (770)
.+|.|+-. .+... ..+..+|+..|+++.........+... ......+|+||+ -|.||. +++..|...
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~---iGGDGT-~L~aa~~~~- 85 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS---LGGDGT-LISLCRKAA- 85 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE---ECCCHH-HHHHHHHhc-
Confidence 35777633 22333 345556667788887655433322100 111124677665 367773 555555432
Q ss_pred CCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 160 RKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 160 ~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
...+||+-+ ..|-.+||. .++++++...|.+++..
T Consensus 86 ~~~~PilGI---N~G~lGFLt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 86 EYDKFVLGI---HAGHLGFLT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCCcEEEE---eCCCcccCC-cCCHHHHHHHHHHHHcC
Confidence 347888754 457778876 58889999999988764
No 272
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=29.30 E-value=1.5e+02 Score=29.97 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh---------hhHhcC
Q 004184 105 ALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF---------KCLSKG 174 (770)
Q Consensus 105 ~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl---------~al~aG 174 (770)
...+..+..++ -+.+.+|+.+.++ ..+|+|-++-.+.. |.++++.|+.. .+.+|+++. ..++.|
T Consensus 91 ~~~~~~~~~~i~gv~t~~e~~~A~~---~Gad~i~~~p~~~~-g~~~~~~l~~~--~~~~p~~a~GGI~~~n~~~~~~~G 164 (190)
T cd00452 91 KAANRAGIPLLPGVATPTEIMQALE---LGADIVKLFPAEAV-GPAYIKALKGP--FPQVRFMPTGGVSLDNAAEWLAAG 164 (190)
T ss_pred HHHHHcCCcEECCcCCHHHHHHHHH---CCCCEEEEcCCccc-CHHHHHHHHhh--CCCCeEEEeCCCCHHHHHHHHHCC
Confidence 33344455544 6779999988875 46899988654333 89999999754 356888844 678888
Q ss_pred CCcEEe
Q 004184 175 AVDFLV 180 (770)
Q Consensus 175 AddyL~ 180 (770)
++.+..
T Consensus 165 ~~~v~v 170 (190)
T cd00452 165 VVAVGG 170 (190)
T ss_pred CEEEEE
Confidence 877643
No 273
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=29.17 E-value=3.3e+02 Score=29.77 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=64.6
Q ss_pred CcEEEEEecC-------hhhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHH
Q 004184 87 SLKVLLVEND-------DSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALL 151 (770)
Q Consensus 87 ~lrVLIVDDd-------~~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-----leLl 151 (770)
-+|+=|+-|+ ..+.+. .+.|-+.||.|. +..|..-|.++..- + -.+||=+ -|-.+| ...+
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~A-ae~Lv~eGF~VlPY~~~D~v~a~rLed~-G---c~aVMPlgsPIGSg~Gl~n~~~l 181 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKA-AEFLVKKGFTVLPYINADPMLAKHLEDI-G---CATVMPLGSPIGSGQGLQNLLNL 181 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHH-HHHHHHCCCEEeecCCCCHHHHHHHHHc-C---CeEEeeccCcccCCCCCCCHHHH
Confidence 4566666433 223333 344557799998 34444445444332 2 2355556 564443 3567
Q ss_pred HHHHhhcCCCCcchhh----------hhhHhcCCCcEE-----eCCCCHHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVII----------FKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 152 r~IR~~~~~~~IPIIv----------l~al~aGAddyL-----~KP~~~eeL~~~L~~vlrr 198 (770)
+.|++. ..+|||+ ..+++.|+++.| .|--++.++..+++..++-
T Consensus 182 ~~i~e~---~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 182 QIIIEN---AKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHc---CCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 888765 4688883 388999999974 5667888888888887764
No 274
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=28.86 E-value=2.2e+02 Score=28.45 Aligned_cols=72 Identities=19% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCC-------CHHHHHHHHHhhcCCCCcchhhh-----
Q 004184 102 VVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-------SGVALLSKIMSHKTRKNLPVIIF----- 168 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgm-------dGleLlr~IR~~~~~~~IPIIvl----- 168 (770)
..+.+|....+--..+.+.+|+.+..+ ..+|.|++-. .|.. -|++.++++++.. .+||+++
T Consensus 87 ~~r~~~~~~~~ig~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI~~ 160 (180)
T PF02581_consen 87 EARKLLGPDKIIGASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGITP 160 (180)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS--T
T ss_pred HhhhhcccceEEEeecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCCCH
Confidence 345555444343458999999666554 4679999987 5543 3889888887653 4888855
Q ss_pred ----hhHhcCCCcEE
Q 004184 169 ----KCLSKGAVDFL 179 (770)
Q Consensus 169 ----~al~aGAddyL 179 (770)
.+.+.|++++-
T Consensus 161 ~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 161 ENIPELREAGADGVA 175 (180)
T ss_dssp TTHHHHHHTT-SEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 66788888764
No 275
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.81 E-value=1.4e+02 Score=31.67 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=36.8
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHH-HHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY----EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-ALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~----eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGl-eLlr~IR 155 (770)
..|.|+.|... +...+..|...|. +++.....++++..+. .+|++|+|. .- +-. ++++.++
T Consensus 71 R~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~~--d~~~~vl~~~~ 137 (218)
T PF07279_consen 71 RHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKRE--DFAARVLRAAK 137 (218)
T ss_pred eEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCch--hHHHHHHHHhc
Confidence 34555555554 5556666665554 3334444667777664 489999999 62 334 5666654
No 276
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.73 E-value=94 Score=34.22 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=48.6
Q ss_pred EEEEEecChhhHHHHHHHH----HhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004184 89 KVLLVENDDSTRHVVAALL----RNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lL----e~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~ 161 (770)
.|||-|.+-...-.+...+ +..++ .|. .+.+.+||.+.+. ..+|+|.+|-|.-.+--++++.|+.. .+
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~---~GaD~I~LDn~~~e~l~~av~~~~~~--~~ 242 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE---YGADIIMLDNMPVDLMQQAVQLIRQQ--NP 242 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH---cCCCEEEECCCCHHHHHHHHHHHHhc--CC
Confidence 3677776644433333333 23443 343 8899999999986 46899999974222222334444432 25
Q ss_pred Ccchhhh---------hhHhcCCCcE
Q 004184 162 NLPVIIF---------KCLSKGAVDF 178 (770)
Q Consensus 162 ~IPIIvl---------~al~aGAddy 178 (770)
++|+.+. .....|+|.+
T Consensus 243 ~i~leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 243 RVKIEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred CeEEEEECCCCHHHHHHHHHcCCCEE
Confidence 6666632 4456677654
No 277
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=28.41 E-value=1.7e+02 Score=27.86 Aligned_cols=45 Identities=31% Similarity=0.321 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHhCCCEEE---EE-CCHHHHHHHHHhcCCCceEEEEcc
Q 004184 97 DSTRHVVAALLRNCGYEVT---EA-TNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~---~A-~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..+...|..+|+.+|+++. .+ .+.++..+.+++....+||||+==
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittG 65 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTG 65 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcC
Confidence 3456788999999998764 33 344433344433223589988854
No 278
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.32 E-value=2.3e+02 Score=30.82 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=35.3
Q ss_pred CcEEEEEecChh---hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEcc
Q 004184 87 SLKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDL--TNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~--~~~pDLVLlDi 141 (770)
..+|.+|+-|.. ....++.+.+..++.+..+.+..+..+.++.. ...+|+||+|.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt 162 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 162 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 457888877654 33445555666788888777765444433221 24689999998
No 279
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=28.13 E-value=3.3e+02 Score=30.53 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=62.4
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEEC--------C---HHHHHHHHHhcCCCceEEEEccCCCCCHHHH-H
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT--------N---GLQAWKILEDLTNHIDLVLTEVMPCLSGVAL-L 151 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~--------d---g~EALe~L~~~~~~pDLVLlDiMPgmdGleL-l 151 (770)
++.+.+|||--.. ....+...|+.+|++++.+. + .++++..+.. ..||.||+=- .+|+.. +
T Consensus 8 pL~g~rIlvtr~~--~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~--~~~d~vvfTS---~ngv~~~~ 80 (381)
T PRK07239 8 PLAGFTVGVTAAR--RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIA--APPDIVVATT---GIGFRGWV 80 (381)
T ss_pred CCCCcEEEEeccC--CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHc--CCCCEEEEeC---hHHHHHHH
Confidence 4567899999743 57788899999999877531 1 1234444433 4577666532 456553 3
Q ss_pred HHHHhhcC-------CCCcchhhh------hhHhcCCC-cEEeCCCCHHHHHHHHHH
Q 004184 152 SKIMSHKT-------RKNLPVIIF------KCLSKGAV-DFLVKPIRKNELKNLWQH 194 (770)
Q Consensus 152 r~IR~~~~-------~~~IPIIvl------~al~aGAd-dyL~KP~~~eeL~~~L~~ 194 (770)
+.++.... ...++|+++ .+.+.|+. +|+..-++.+.|.+.+..
T Consensus 81 ~~l~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~ 137 (381)
T PRK07239 81 EAADGWGLADELLEALSSARLLARGPKATGAIRAAGLREEWSPASESSAEVLEYLLE 137 (381)
T ss_pred HHHHHcCChHHHHHHHcCCeEEEECccHHHHHHHcCCCCccCCCCCccHHHHHHHhc
Confidence 44433221 134566654 23457764 566677788888877653
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=28.13 E-value=2.2e+02 Score=31.95 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=35.3
Q ss_pred CCcEEEEEecCh---hhHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~---~~r~~L~~lLe~~G~eV~~A~dg-------~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+|++-|. ...+.++.+.+..|+.+.....+ .++++.+.. ..+|+||+|.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDT 230 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDT 230 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 456898888773 33455666666778776644332 245555554 5689999998
No 281
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=28.10 E-value=48 Score=36.99 Aligned_cols=34 Identities=15% Similarity=-0.140 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 26 ~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
..+|++++++.+||.+.+.+..+ .|+.|++.+|.
T Consensus 400 GL~iv~~i~~~~~g~l~i~~~~~------~G~~~~i~lp~ 433 (435)
T PRK09467 400 GLAIVKRIVDQHNGKVELGNSEE------GGLSARAWLPL 433 (435)
T ss_pred hHHHHHHHHHHCCCEEEEEECCC------CcEEEEEEEeC
Confidence 48999999999999987755443 45555555543
No 282
>PLN02727 NAD kinase
Probab=28.09 E-value=3.3e+02 Score=34.87 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=63.0
Q ss_pred CcEEEEEecChh-hH---HHHHHHHHhC-CCEEEEECCHHHHHHHHH--------------hcCCCceEEEEccCCCCCH
Q 004184 87 SLKVLLVENDDS-TR---HVVAALLRNC-GYEVTEATNGLQAWKILE--------------DLTNHIDLVLTEVMPCLSG 147 (770)
Q Consensus 87 ~lrVLIVDDd~~-~r---~~L~~lLe~~-G~eV~~A~dg~EALe~L~--------------~~~~~pDLVLlDiMPgmdG 147 (770)
..+|+||-.... .. ..|..+|... |++|+.-....+.+..+. .....+|+||+ -|.||
T Consensus 678 ~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv---LGGDG 754 (986)
T PLN02727 678 PKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC---LGGDG 754 (986)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE---ECCcH
Confidence 357888854422 22 2345666665 888887666555441111 10123566555 37787
Q ss_pred HHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 148 VALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
. +|+.++... ...+|||- +..|-.+||. .+.++++...|.+++...
T Consensus 755 T-lLrAar~~~-~~~iPILG---INlGrLGFLT-di~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 755 V-ILHASNLFR-GAVPPVVS---FNLGSLGFLT-SHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred H-HHHHHHHhc-CCCCCEEE---EeCCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 3 455555432 34678874 4568888887 589999999999988653
No 283
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=28.06 E-value=1.2e+02 Score=27.37 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=38.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|..+|=++...+..+..+...+. ++. ...|..+..+.+.. ..+|+||++.
T Consensus 24 ~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 24 ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 5899999999999999999998765 333 66677666655554 7899999997
No 284
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=27.84 E-value=3e+02 Score=30.53 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=47.2
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C---CC--C-CHHHHHHHHHhhcCCCCcchh-------
Q 004184 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M---PC--L-SGVALLSKIMSHKTRKNLPVI------- 166 (770)
Q Consensus 103 L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M---Pg--m-dGleLlr~IR~~~~~~~IPII------- 166 (770)
+...|+..|..|+ .+.+.++|...++. .+|+|++-= - .+ . +-+.|+..++... .+|||
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhc---CCcEEEecCcCC
Confidence 3455778888777 99999999887764 589888763 1 12 2 2477888887653 58998
Q ss_pred ---hhhhHhcCCCcEEe
Q 004184 167 ---IFKCLSKGAVDFLV 180 (770)
Q Consensus 167 ---vl~al~aGAddyL~ 180 (770)
+..++.+||+++..
T Consensus 202 g~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 202 GRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHHHHCT-SEEEE
T ss_pred HHHHHHHHHcCCCEeec
Confidence 33778999998764
No 285
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.75 E-value=2.4e+02 Score=30.68 Aligned_cols=98 Identities=18% Similarity=0.251 Sum_probs=56.7
Q ss_pred cEEEEE--ecChhhHH---HHHHHHHhCCCEEEEECCHHHHHHHHHh--cCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004184 88 LKVLLV--ENDDSTRH---VVAALLRNCGYEVTEATNGLQAWKILED--LTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 88 lrVLIV--DDd~~~r~---~L~~lLe~~G~eV~~A~dg~EALe~L~~--~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~ 160 (770)
|+|.|| .+.+...+ .+..+| ..|+++.......+.+..... ....+|+||+ -|.||. +++..|..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~---lGGDGT-~L~a~~~~--- 72 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIIT---IGGDGT-ILRTLQRA--- 72 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEE---EcCcHH-HHHHHHHc---
Confidence 346665 23334443 344445 458887765443333321100 0013566555 377884 55666543
Q ss_pred CCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 161 KNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 161 ~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..||+-+ ..|-.+||. -++++++...|.++++.
T Consensus 73 -~~PilGI---N~G~lGFL~-~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 73 -KGPILGI---NMGGLGFLT-EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred -CCCEEEE---ECCCCccCc-ccCHHHHHHHHHHHHcC
Confidence 2477643 558888998 68999999999999875
No 286
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.71 E-value=3.4e+02 Score=28.69 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEcc-CCCCC------HHHHHHHHHhhcCCCCcchhh-
Q 004184 99 TRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTEV-MPCLS------GVALLSKIMSHKTRKNLPVII- 167 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg---~EALe~L~~~~~~pDLVLlDi-MPgmd------GleLlr~IR~~~~~~~IPIIv- 167 (770)
....+...+++.|.++..+-+. .+.++.+.. ....++++ . +|+.. -.+.+++||+.. ...||++
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~--~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v~ 191 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSK--LSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVVG 191 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH--hCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEEe
Confidence 3445667778889877644333 445555444 34566777 5 77632 244666776543 2456551
Q ss_pred ---------hhhHhcCCCcEEeCC
Q 004184 168 ---------FKCLSKGAVDFLVKP 182 (770)
Q Consensus 168 ---------l~al~aGAddyL~KP 182 (770)
-.++++|||.++.--
T Consensus 192 gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 192 FGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECH
Confidence 145789999998763
No 287
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.57 E-value=2.5e+02 Score=32.07 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=40.8
Q ss_pred cEEEEEec-ChhhHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEcc--CCCCCHHH
Q 004184 88 LKVLLVEN-DDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEV--MPCLSGVA 149 (770)
Q Consensus 88 lrVLIVDD-d~~~r~~L~~lLe~~G~eV~~A~d-g~EALe~L~~~~~~pDLVLlDi--MPgmdGle 149 (770)
-+||+.++ -..++..+..+|...|+++..+.. -.++|+.+-+ ...++|+++. -|-+.-.+
T Consensus 95 d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~--~~t~~v~~EspsNP~l~v~D 158 (386)
T PF01053_consen 95 DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALR--PNTKLVFLESPSNPTLEVPD 158 (386)
T ss_dssp BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHC--TTEEEEEEESSBTTTTB---
T ss_pred CceEecCCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhcc--ccceEEEEEcCCCccccccc
Confidence 35777665 445777888889999999988754 2455555444 5789999998 57655443
No 288
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.47 E-value=3.4e+02 Score=27.72 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFK 169 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~ 169 (770)
+...+...+++.||.+...... .++++.+.. ..+|.||+.. .+.. ..++++.. ..+|+|++.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~~dgiii~~~~~~~---~~~~~~~~----~~ipvV~i~ 85 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSA--RRTDGVILVTPELTS---AQRAALRR----TGIPFVVVD 85 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHH--cCCCEEEEecCCCCh---HHHHHHhc----CCCCEEEEe
Confidence 3445566677889998754432 245666665 6789887755 4432 34566543 468888763
No 289
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=27.46 E-value=67 Score=36.14 Aligned_cols=36 Identities=11% Similarity=-0.102 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
-..+|++++++++||.+.+.+..+ .|++|++.+|..
T Consensus 424 lGL~iv~~i~~~~~G~l~~~s~~~------~G~~~~i~lP~~ 459 (466)
T PRK10549 424 LGLAICLNIVEAHNGRIIAAHSPF------GGVSITVELPLE 459 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCC------CeEEEEEEccCC
Confidence 358899999999999988876654 355666666544
No 290
>PRK09727 his operon leader peptide; Provisional
Probab=27.22 E-value=25 Score=24.34 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.7
Q ss_pred cccccccc
Q 004184 596 LTQHYDNC 603 (770)
Q Consensus 596 ~~~~~~~~ 603 (770)
|.+|||||
T Consensus 6 fkhhhhhh 13 (26)
T PRK09727 6 FKHHHHHH 13 (26)
T ss_pred eecccccc
Confidence 55544443
No 291
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=27.04 E-value=64 Score=38.73 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=39.5
Q ss_pred CCCchhHHHHHHHHHhhhcCCc--------cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 2 NVDGKADKRLQELNHCLQAGSK--------RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 2 ~~~g~g~~r~~~L~~~l~~~~~--------~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.|+|+|+. ...+.|+|+...+ .-..+|+..|++-|||.+.+... ++.|..|++.++.
T Consensus 537 rDnGpGi~-~e~~~~lFePF~TtK~~~~GLGLGLaIS~~i~~d~GGsL~v~n~------~~~Ga~F~i~L~~ 601 (603)
T COG4191 537 RDNGPGIA-PEALPHLFEPFFTTKPVGKGLGLGLAISQNIARDLGGSLEVANH------PEGGASFTIELRR 601 (603)
T ss_pred ccCCCCCC-HHHHHhhcCCccccCcccCCcchhHHHHHHHHHHhCCeEEeecC------CCCceEEEEEeec
Confidence 47889886 4477777733322 22389999999999999988633 3456667776653
No 292
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=27.01 E-value=69 Score=32.06 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=33.8
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|||+|.-...-..+.++|++.|+++............... ..+|.||+
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil 48 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVI 48 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEE
Confidence 6899999999999999999999988755543332221122 45887666
No 293
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=27.01 E-value=4e+02 Score=31.67 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=53.0
Q ss_pred CcEEEEEecChh----hHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEc--------------c-CCC
Q 004184 87 SLKVLLVENDDS----TRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTE--------------V-MPC 144 (770)
Q Consensus 87 ~lrVLIVDDd~~----~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlD--------------i-MPg 144 (770)
+..|++||--.- ..+.++.+=+.+ +..|+ -+.+.++|..+++ ..+|.|.+- . .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCCCc
Confidence 456777774321 123344443344 34554 3778888888776 457888653 1 233
Q ss_pred CCHHHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 145 LSGVALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 145 mdGleLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
..-+..+..+.+. ..+||| +.+|+.+||+.++.
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3445556666543 368988 55899999998764
No 294
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=26.99 E-value=2.1e+02 Score=31.57 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=38.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---E-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---V-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V-~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..|+-||-.....+..++-+.-.|+. + ..+.|.-+.|..++. ...||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-~~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-GGRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-TT-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-CCCCCEEEECC
Confidence 47999999999999999988877753 2 367888888887764 46899999997
No 295
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=26.98 E-value=2.9e+02 Score=30.35 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=47.1
Q ss_pred cEEEEEecC-h---hhHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 88 LKVLLVEND-D---STRHVVAALLRNCGYEVT---EA----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd-~---~~r~~L~~lLe~~G~eV~---~A----~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
.+|.++-.+ . ...+.++..|+..|++|+ .+ .|....+..|+. ..+|+||+= +.+.+...+++.+++
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~--~~pDav~~~-~~~~~~~~~~~~~~~ 211 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKA--FKPDVVFNT-LNGDSNVAFFKQLKN 211 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHH--hCCCEEEEe-ccCCCHHHHHHHHHH
Confidence 355554433 2 345567788888999875 22 244555666665 679988742 344457788999988
Q ss_pred hcCCCC-cchh
Q 004184 157 HKTRKN-LPVI 166 (770)
Q Consensus 157 ~~~~~~-IPII 166 (770)
....+. +|++
T Consensus 212 ~G~~~~~~~~~ 222 (359)
T TIGR03407 212 AGITAKDVPVV 222 (359)
T ss_pred cCCCccCCcEE
Confidence 765433 4444
No 296
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=26.93 E-value=79 Score=37.62 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=46.2
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi---MPgmdGleLlr~IR~~~~~~~IP 164 (770)
+|||||....+-..|..+|++.|+. |........-++.+.. ..||.||+-- -|..++.. ++.|+.. ...+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~--~~~d~vIlsgGP~~p~~~~~~-~~li~~~--~~~~P 75 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEA--LNPSHIVISPGPGRPEEAGIS-VEVIRHF--SGKVP 75 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHh--cCCCEEEECCCCCChhhCCcc-HHHHHHh--hcCCC
Confidence 3899999999999999999999985 6655322212344443 5688888754 23333332 2333322 24678
Q ss_pred hh
Q 004184 165 VI 166 (770)
Q Consensus 165 II 166 (770)
|+
T Consensus 76 vL 77 (534)
T PRK14607 76 IL 77 (534)
T ss_pred EE
Confidence 87
No 297
>PRK10060 RNase II stability modulator; Provisional
Probab=26.79 E-value=2.3e+02 Score=34.43 Aligned_cols=92 Identities=17% Similarity=0.210 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-CC----CCHHHHHHHHHhhcCCCCcchhhh----
Q 004184 101 HVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PC----LSGVALLSKIMSHKTRKNLPVIIF---- 168 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-M-Pg----mdGleLlr~IR~~~~~~~IPIIvl---- 168 (770)
..+...|+..|+.+. -+.++-.-+..|.. -++|.|=+|- + -+ .....+++.|-.....-.+.||+-
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGVEt 621 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVET 621 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 344566678898877 46778888888887 7899999995 2 22 234556665543322234566621
Q ss_pred -----hhHhcCCCc----EEeCCCCHHHHHHHHHH
Q 004184 169 -----KCLSKGAVD----FLVKPIRKNELKNLWQH 194 (770)
Q Consensus 169 -----~al~aGAdd----yL~KP~~~eeL~~~L~~ 194 (770)
.+...|++. |+.||+..+++...|.+
T Consensus 622 ~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 622 AKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred HHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 345667753 57899999998876654
No 298
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=26.78 E-value=3.1e+02 Score=30.01 Aligned_cols=23 Identities=9% Similarity=0.097 Sum_probs=18.8
Q ss_pred CCcEEeCCCCHHHHHHHHHHHHH
Q 004184 175 AVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 175 AddyL~KP~~~eeL~~~L~~vlr 197 (770)
+..|+.+..++++|.+.|..++.
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhc
Confidence 35577789999999999988875
No 299
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=26.77 E-value=1.1e+02 Score=31.41 Aligned_cols=51 Identities=25% Similarity=0.277 Sum_probs=34.2
Q ss_pred EEEEEecC---------hhhHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHhcCCCceEEEEcc-CC
Q 004184 89 KVLLVEND---------DSTRHVVAALLR-NCGYEVTEATNGLQAW-KILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 89 rVLIVDDd---------~~~r~~L~~lLe-~~G~eV~~A~dg~EAL-e~L~~~~~~pDLVLlDi-MP 143 (770)
||||+... +.....|..+|+ ..+|+|....+....- +.| ..+|+||+.. ..
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCC
Confidence 57777666 257788999999 7799999877744321 224 4699999988 64
No 300
>PRK03612 spermidine synthase; Provisional
Probab=26.65 E-value=1.6e+02 Score=34.97 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=43.0
Q ss_pred cEEEEEecChhhHHHHHH--HHHhC---C---CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH------HHHH
Q 004184 88 LKVLLVENDDSTRHVVAA--LLRNC---G---YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG------VALL 151 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~--lLe~~---G---~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG------leLl 151 (770)
.+|.+||=|+.+.+..++ .|... . -++. ...|+.+.++.. ...||+||+|. .|...+ .+++
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---AEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---CCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 589999999999999888 44322 1 1343 456666555432 36799999998 765322 2455
Q ss_pred HHHHhh
Q 004184 152 SKIMSH 157 (770)
Q Consensus 152 r~IR~~ 157 (770)
+.+++.
T Consensus 399 ~~~~~~ 404 (521)
T PRK03612 399 RLLKRR 404 (521)
T ss_pred HHHHHh
Confidence 555543
No 301
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=26.63 E-value=1.8e+02 Score=32.81 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=42.8
Q ss_pred cEEEEEecChhhH-----HHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004184 88 LKVLLVENDDSTR-----HVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (770)
Q Consensus 88 lrVLIVDDd~~~r-----~~L~~lLe~~G~eV~~A~d---------g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~ 153 (770)
-|+|||-|..... +.+...|+..|+++..+.. .+++++.+++ ..+|+||- +-|.+-+++.+.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--vGGGSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMRE--FEPDWIIA--LGGGSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHH
Confidence 4789998865544 5778888888887766543 5677777776 77888764 344555555555
Q ss_pred H
Q 004184 154 I 154 (770)
Q Consensus 154 I 154 (770)
|
T Consensus 100 i 100 (375)
T cd08179 100 M 100 (375)
T ss_pred H
Confidence 4
No 302
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=26.44 E-value=1.8e+02 Score=31.49 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEcc--CCCCCH
Q 004184 99 TRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEV--MPCLSG 147 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~-dg~EALe~L~~~~~~pDLVLlDi--MPgmdG 147 (770)
....+...|+..||+++.+. +..+.+..+.. ..+|+||.-+ ..+.+|
T Consensus 23 s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~--~~~d~vf~~lhG~~ge~~ 72 (296)
T PRK14569 23 SGKAVLDSLISQGYDAVGVDASGKELVAKLLE--LKPDKCFVALHGEDGENG 72 (296)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCchhHHHHhhc--cCCCEEEEeCCCCCCCCh
Confidence 34456777788899988665 44566666665 6799888755 345554
No 303
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=26.26 E-value=77 Score=32.48 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=27.8
Q ss_pred CccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 22 ~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
+..-..+|++.+++.+||.+.+.+..+. | ++|++.+|..
T Consensus 292 g~GlGL~i~~~~~~~~~g~i~~~~~~~~----G--t~~~i~lP~~ 330 (336)
T COG0642 292 GTGLGLAIVKRIVELHGGTISVESEPGK----G--TTFTIRLPLA 330 (336)
T ss_pred CCCccHHHHHHHHHHcCCEEEEEecCCC----c--eEEEEEEecc
Confidence 3455689999999999999988777744 3 4455555543
No 304
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=26.21 E-value=1.8e+02 Score=33.81 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=59.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~ 157 (770)
.....||||--.--+..++.+.|.+.||.|. .+.+.+++..++.. ...|+.+.++ .+...+.+++..+.+.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~--~~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGV--FFVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcc--cccccccceeeeccccccchhhhhhhh
Confidence 4567899999999999999999999999988 88899999888873 4467888888 7888888888888654
No 305
>PRK10481 hypothetical protein; Provisional
Probab=26.21 E-value=2.8e+02 Score=29.51 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=41.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEEC------CHHHHHHHHHhc-CCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEAT------NGLQAWKILEDL-TNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~------dg~EALe~L~~~-~~~pDLVLlDiMPgmdGleLlr~IR~~~~ 159 (770)
.-+|-||--.+.......+.+...||++..+. +.+...+..++. ....|+|++|++ ++.- +....|.+.
T Consensus 129 g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~-G~~~-~~~~~le~~-- 204 (224)
T PRK10481 129 GHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL-GYHQ-RHRDLLQKA-- 204 (224)
T ss_pred CCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC-CcCH-HHHHHHHHH--
Confidence 34676666666665555555555599876333 222333333311 157899999982 1222 444455443
Q ss_pred CCCcchhh
Q 004184 160 RKNLPVII 167 (770)
Q Consensus 160 ~~~IPIIv 167 (770)
-.+|||.
T Consensus 205 -lg~PVI~ 211 (224)
T PRK10481 205 -LDVPVLL 211 (224)
T ss_pred -HCcCEEc
Confidence 3678873
No 306
>PLN00191 enolase
Probab=26.19 E-value=2.6e+02 Score=32.90 Aligned_cols=97 Identities=10% Similarity=0.206 Sum_probs=64.1
Q ss_pred EecChhhHHHHHHHHHhCCCE--E-----------------EE------------ECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 93 VENDDSTRHVVAALLRNCGYE--V-----------------TE------------ATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 93 VDDd~~~r~~L~~lLe~~G~e--V-----------------~~------------A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
++++....++|.+.++..||+ | +. .-+.++++++++.....++|+.+.-
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567778888899999877664 1 10 1278888888876555688888877
Q ss_pred -CCCCCHHHHHHHHHhhcCCCCcchhh-----------hhhHhcC-CCcEEeCCCCHHHHHHHHH
Q 004184 142 -MPCLSGVALLSKIMSHKTRKNLPVII-----------FKCLSKG-AVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 142 -MPgmdGleLlr~IR~~~~~~~IPIIv-----------l~al~aG-AddyL~KP~~~eeL~~~L~ 193 (770)
++..| ++-.++|++. ..+||+. .++++.+ ++.+++|+-..--|.++++
T Consensus 319 Pl~~~D-~eg~~~Lt~~---~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQDD-WEHWAKLTSL---EDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCccc-HHHHHHHHcc---CCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 76533 5566667654 3567662 2455655 4667888887665555554
No 307
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=26.18 E-value=1.1e+02 Score=32.54 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHhhcCCCCcchhhh--
Q 004184 97 DSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMSHKTRKNLPVIIF-- 168 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-MP-gmdG-leLlr~IR~~~~~~~IPIIvl-- 168 (770)
..=..++..+|+..||+|+-.. ..++.++.+++ ..+|+|-+-. |- -|-+ .++++.|++......+.+++=
T Consensus 118 dIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e--~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGA 195 (227)
T COG5012 118 DIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKE--LKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGA 195 (227)
T ss_pred HHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHH--cCCcEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCc
Confidence 3445678889999999998333 46788888887 7899999887 63 3445 357888888775444333311
Q ss_pred -----hhHhcCCCcEEe
Q 004184 169 -----KCLSKGAVDFLV 180 (770)
Q Consensus 169 -----~al~aGAddyL~ 180 (770)
-+-+.|||.|-.
T Consensus 196 pvtq~~a~~iGAD~~~~ 212 (227)
T COG5012 196 PVTQDWADKIGADAYAE 212 (227)
T ss_pred cccHHHHHHhCCCccCc
Confidence 234668887754
No 308
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.11 E-value=7.1e+02 Score=26.19 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=60.5
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccC--CCCCHHHHHHHHHhhcCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVM--PCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDiM--PgmdGleLlr~IR~~~~~ 160 (770)
.++++|+.+.+. ...+..+++..+. .|.... +..+..+++.. .|++|+=.. .+.-|+.+++.+.
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~----- 287 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA----- 287 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH-----
Confidence 356666665543 3345555544432 233322 33445555543 466655321 2334666777764
Q ss_pred CCcchhhh------hhHhc-CCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 161 KNLPVIIF------KCLSK-GAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 161 ~~IPIIvl------~al~a-GAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..+|||+. ..+.. |..+|+..|-+.+++..+|..++..
T Consensus 288 ~g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 288 FGKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred cCCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 25788854 33444 8889999999999999999999864
No 309
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=26.09 E-value=5.2e+02 Score=26.55 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|..+++.+. ..+|||+. ..+..+..+++..+-+.++|.+.|..++.
T Consensus 277 ~~~~~Ea~~-----~G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA-----MGRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH-----cCCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 555666653 34677743 34555778899999999999999998764
No 310
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.07 E-value=1.1e+02 Score=34.35 Aligned_cols=56 Identities=11% Similarity=0.008 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCceEEEEcc-CCCCC-HHHHHHHHHhhcCCCCcchhh---------hhhHhcCCCcEE
Q 004184 121 LQAWKILEDLTNHIDLVLTEV-MPCLS-GVALLSKIMSHKTRKNLPVII---------FKCLSKGAVDFL 179 (770)
Q Consensus 121 ~EALe~L~~~~~~pDLVLlDi-MPgmd-GleLlr~IR~~~~~~~IPIIv---------l~al~aGAddyL 179 (770)
+++.++++. +..+|+|.+|+ .+... -.+++++||+. .+.+|||+ ..++++|++..+
T Consensus 100 ~~~~~Lv~a-g~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAE-GLTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhc-CCCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 555555553 12469999999 86543 46789999875 36677773 267888988865
No 311
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=26.06 E-value=5.4e+02 Score=29.28 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=37.3
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCC------CcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGA------VDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 134 pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGA------ddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.|++|+=..-+.-|+.+++.+. -.+|+|+. ..+..|. .+|+..|.+.++|..+|..++...
T Consensus 371 aDv~l~pS~~E~~gl~~lEAma-----~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~ 443 (476)
T cd03791 371 ADFFLMPSRFEPCGLTQMYAMR-----YGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALY 443 (476)
T ss_pred CCEEECCCCCCCCcHHHHHHhh-----CCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 4555542222334555555553 24556532 2233344 899999999999999999987654
No 312
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=25.87 E-value=4.9e+02 Score=28.05 Aligned_cols=69 Identities=16% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 120 g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
..+..+++.. .|++|+=.+.+.-|+.+++.+. ..+|||+. +.+..+..+++..|.+.++|...|.
T Consensus 293 ~~~~~~~~~~----adi~l~ps~~e~~~~~l~Ea~a-----~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~ 363 (398)
T cd03800 293 REDLPALYRA----ADVFVNPALYEPFGLTALEAMA-----CGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALR 363 (398)
T ss_pred HHHHHHHHHh----CCEEEecccccccCcHHHHHHh-----cCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHH
Confidence 3444455543 4665542222333455666653 35677743 3455666789999999999999999
Q ss_pred HHHH
Q 004184 194 HVWR 197 (770)
Q Consensus 194 ~vlr 197 (770)
.++.
T Consensus 364 ~l~~ 367 (398)
T cd03800 364 RLLT 367 (398)
T ss_pred HHHh
Confidence 8875
No 313
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=25.84 E-value=1.6e+02 Score=30.90 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=33.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQA 123 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EA 123 (770)
++|.|||=.--++..+...|++.|+++.+..+.++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 589999999999999999999999999999998873
No 314
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=25.68 E-value=4.4e+02 Score=29.74 Aligned_cols=106 Identities=10% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHH------hCCCEE-E-EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR------NCGYEV-T-EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALL 151 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe------~~G~eV-~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLl 151 (770)
.-+|+=|+-|+.....-+...++ +.||.| . ++.|...|-++..- .+ +.++=+ -| +..--+.+
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHH
Confidence 34666677666554443333322 349988 3 66677777665543 33 444433 22 22335677
Q ss_pred HHHHhhcCCCCcchh----------hhhhHhcCCCcEE-----eCCCCHHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVI----------IFKCLSKGAVDFL-----VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 152 r~IR~~~~~~~IPII----------vl~al~aGAddyL-----~KP~~~eeL~~~L~~vlrr 198 (770)
+.+.+. ..+||| +..++++|+++.| .|--++-.+..+++..+.-
T Consensus 242 ~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 242 RLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred HHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 777765 468888 3488999999975 4556777777777776653
No 315
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.66 E-value=2.4e+02 Score=30.67 Aligned_cols=82 Identities=13% Similarity=0.068 Sum_probs=50.0
Q ss_pred EEEEEecChhhHHHHH----HHHHhCC--C-EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004184 89 KVLLVENDDSTRHVVA----ALLRNCG--Y-EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~----~lLe~~G--~-eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~ 161 (770)
.|||.|++-...-.+. .+=+..+ . -.+.+.+.+||.+.+. ..+|.|.+|-|. .+.++++.+.. ..
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~---~gaDyI~ld~~~----~e~l~~~~~~~-~~ 225 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE---AGADIIMLDNMS----PEELREAVALL-KG 225 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH---cCCCEEEECCcC----HHHHHHHHHHc-CC
Confidence 4788888755442222 2222233 2 2348999999999876 458999999742 45566655432 12
Q ss_pred Ccchhhh---------hhHhcCCCcE
Q 004184 162 NLPVIIF---------KCLSKGAVDF 178 (770)
Q Consensus 162 ~IPIIvl---------~al~aGAddy 178 (770)
++|+++. ...+.|++.+
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcCCCEE
Confidence 5777743 5667788764
No 316
>PLN02316 synthase/transferase
Probab=25.42 E-value=5.3e+02 Score=33.51 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=22.8
Q ss_pred CCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 174 GAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 174 GAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+..+||..|.++..|..+|.+++...
T Consensus 974 ~~tGflf~~~d~~aLa~AL~raL~~~ 999 (1036)
T PLN02316 974 EPNGFSFDGADAAGVDYALNRAISAW 999 (1036)
T ss_pred CCceEEeCCCCHHHHHHHHHHHHhhh
Confidence 47899999999999999999988753
No 317
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.38 E-value=2.2e+02 Score=30.71 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCcEEEEEecChhh----HH--HHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEcc-CCCCCHH-----HHH
Q 004184 86 RSLKVLLVENDDST----RH--VVAALLRNCGYEVTEAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSGV-----ALL 151 (770)
Q Consensus 86 ~~lrVLIVDDd~~~----r~--~L~~lLe~~G~eV~~A~--dg~EALe~L~~~~~~pDLVLlDi-MPgmdGl-----eLl 151 (770)
.-+|+=|+-|+... .+ ...++|-+.||.|..+. |.--|- .|++.+ -..||-+ -|-.+|. ..+
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~ar-rLee~G---caavMPl~aPIGSg~G~~n~~~l 174 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLAR-RLEEAG---CAAVMPLGAPIGSGLGLQNPYNL 174 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHH-HHHhcC---ceEeccccccccCCcCcCCHHHH
Confidence 44677666665332 22 23455667899998433 444443 343311 3466666 6655553 567
Q ss_pred HHHHhhcCCCCcchhh----------hhhHhcCCCcEEeC-----CCCHHHHHHHHHHHHH
Q 004184 152 SKIMSHKTRKNLPVII----------FKCLSKGAVDFLVK-----PIRKNELKNLWQHVWR 197 (770)
Q Consensus 152 r~IR~~~~~~~IPIIv----------l~al~aGAddyL~K-----P~~~eeL~~~L~~vlr 197 (770)
+.|++. .++|||+ ..+++.|+|.+|.- --++-.+..++...+.
T Consensus 175 ~iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 175 EIIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 777765 3899994 37899999999864 2345555555555543
No 318
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=25.29 E-value=4.2e+02 Score=28.71 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCCcchhh----------hhhHhcCCCc------EEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 148 VALLSKIMSHKTRKNLPVII----------FKCLSKGAVD------FLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPIIv----------l~al~aGAdd------yL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
++.+.+|++. ..+|||. .+++..||+. +|.+|.-..++..-|.+++.+...
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 3566677654 3588883 3677889876 577887777777777777776543
No 319
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=25.21 E-value=3.5e+02 Score=29.27 Aligned_cols=74 Identities=18% Similarity=0.138 Sum_probs=48.5
Q ss_pred cEEEEEecChh----hHHHHHHHHHh--CCCEEEE-------E-CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004184 88 LKVLLVENDDS----TRHVVAALLRN--CGYEVTE-------A-TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (770)
Q Consensus 88 lrVLIVDDd~~----~r~~L~~lLe~--~G~eV~~-------A-~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~ 153 (770)
.+|.||.++.. ..+.++..|++ .|.+|+. . .+....+..++. ..+|+|++...+. +...+++.
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~--~~~d~v~~~~~~~-~~~~~~~~ 220 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKA--SGADTVITGNWGN-DLLLLVKQ 220 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHH--cCCCEEEEcccCc-hHHHHHHH
Confidence 35655554333 44567777888 8887752 1 455667777776 7799999976333 67788999
Q ss_pred HHhhcCCCCcchh
Q 004184 154 IMSHKTRKNLPVI 166 (770)
Q Consensus 154 IR~~~~~~~IPII 166 (770)
+++... .++++
T Consensus 221 ~~~~g~--~~~~~ 231 (342)
T cd06329 221 AADAGL--KLPFY 231 (342)
T ss_pred HHHcCC--CceEE
Confidence 987653 44554
No 320
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=25.19 E-value=5e+02 Score=26.25 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhh-
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKC- 170 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~a- 170 (770)
+...+.+.++..||.+..... .. ++++.+.. ..+|.||+.. .+. ..++++.+++ ..+|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~~ 88 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLR--QRVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEecc
Confidence 344556667788999876532 22 34555544 6789888865 432 2345666654 3578776522
Q ss_pred HhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 171 LSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 171 l~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
...+ ..|+. .-.......+...+++
T Consensus 89 ~~~~-~~~v~-~d~~~~g~~~~~~l~~ 113 (266)
T cd06282 89 PQPG-RPSVS-VDNRAAARDVAQALAA 113 (266)
T ss_pred CCCC-CCEEe-eCcHHHHHHHHHHHHH
Confidence 2222 23443 3334444445555544
No 321
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.15 E-value=6.2e+02 Score=27.92 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHH---hCCCEEEEEC-----CHHHHHHHHHhc--CCCceEEEEcc-CC-CCCHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR---NCGYEVTEAT-----NGLQAWKILEDL--TNHIDLVLTEV-MP-CLSGVALLSK 153 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A~-----dg~EALe~L~~~--~~~pDLVLlDi-MP-gmdGleLlr~ 153 (770)
..+-|++|.|++.....++...+ +.|+.+.... +-++.++.+.+. ...+|=||+-+ +| ..+-..+++.
T Consensus 32 P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~ 111 (281)
T PRK14183 32 PGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEA 111 (281)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhc
Confidence 34678999999988777666554 5688765433 556666666653 34567899988 87 5776667776
Q ss_pred HHhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 154 IMSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 154 IR~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
|.-. +++=-+ -+-.+..|-.. ..|.++..+.++|++.
T Consensus 112 I~p~---KDVDGl~~~n~g~l~~g~~~--~~PcTp~avi~lL~~~ 151 (281)
T PRK14183 112 IDPK---KDVDGFHPYNVGRLVTGLDG--FVPCTPLGVMELLEEY 151 (281)
T ss_pred cCch---hcccccChhhhhHHhcCCCC--CCCCcHHHHHHHHHHc
Confidence 6422 232111 11122234222 3588888777766543
No 322
>PLN02591 tryptophan synthase
Probab=25.06 E-value=2.9e+02 Score=29.73 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCCcchhhh----------------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF----------------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl----------------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+++++++|.. ..+|+|+| +|.++|++++|.-.+..+|....+..+.+
T Consensus 66 ~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 66 VISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 46777777742 46786633 67889999999999998888877666543
No 323
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=25.03 E-value=5.7e+02 Score=29.07 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=63.8
Q ss_pred CcEEEEEecCh-----hhHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004184 87 SLKVLLVENDD-----STRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (770)
Q Consensus 87 ~lrVLIVDDd~-----~~r~~L~~lLe~~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~ 157 (770)
.++++||.+.. ...+.|+.+.+..+. .|.... +-++..+++.. .|++|.=...+.=|+.+++.+..
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~~E~Fgi~~lEAMa~- 347 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMWNEHFGIGVVEYMAA- 347 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCccCCcccHHHHHHHc-
Confidence 36788887642 345667777776665 355444 35666777754 57766533334447778777742
Q ss_pred cCCCCcchhhhh-------hHh---cCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 158 KTRKNLPVIIFK-------CLS---KGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 158 ~~~~~IPIIvl~-------al~---aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+|+|+.. .+. .|..+||.. ++++|.++|..++.
T Consensus 348 ----G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 348 ----GLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred ----CCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 35666431 223 577889863 89999999999886
No 324
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.99 E-value=5.1e+02 Score=30.04 Aligned_cols=91 Identities=11% Similarity=0.248 Sum_probs=0.0
Q ss_pred CcEEEEEe----cChhhHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCC------------CH
Q 004184 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCL------------SG 147 (770)
Q Consensus 87 ~lrVLIVD----Dd~~~r~~L~~lLe~~-G~eV~~--A~dg~EALe~L~~~~~~pDLVLlDiMPgm------------dG 147 (770)
+..|++|| +.....+.++.+=+.+ +..++. +.+.++|..++. ..+|.|.+-+-|+- .-
T Consensus 165 GvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ 241 (404)
T PRK06843 165 HVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQ 241 (404)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEECCCCCcCCcceeecCCCCCh
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
+.++..+++......+||| +.+|+.+||+.++.
T Consensus 242 ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 242 ITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
No 325
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=24.85 E-value=5e+02 Score=28.23 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred CcEEEEEecChh-------hHHHHHHHHHh-CCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004184 87 SLKVLLVENDDS-------TRHVVAALLRN-CGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~~-------~r~~L~~lLe~-~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~I 154 (770)
.++++|+.+-+. ....++.+++. .+. .|.... ..++..+++.. .|++|+-...+.-|+-+++.+
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~E~~g~~~lEAm 320 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSNEHFGIVPLEAM 320 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCcCCCCchHHHHH
Confidence 456666654321 23445555555 443 233322 33444455543 577666441122355566655
Q ss_pred HhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 155 R~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
. ..+|||+. ..+..|..+|+..| +.++|.+.|..++.
T Consensus 321 a-----~G~PvI~s~~~~~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~ 363 (392)
T cd03805 321 Y-----AGKPVIACNSGGPLETVVDGETGFLCEP-TPEEFAEAMLKLAN 363 (392)
T ss_pred H-----cCCCEEEECCCCcHHHhccCCceEEeCC-CHHHHHHHHHHHHh
Confidence 3 35677743 44556677888866 99999999888875
No 326
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=24.69 E-value=2.9e+02 Score=29.42 Aligned_cols=52 Identities=12% Similarity=0.147 Sum_probs=36.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..+|..||-++...+..+.-++..+.++. ..|..+.+..... ..||+||+|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~~--~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTALR--GRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-EeechhhcchhcC--CCEeEEEECC
Confidence 45899999999999988888887776554 3344443322112 4699999996
No 327
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=24.63 E-value=3.4e+02 Score=28.91 Aligned_cols=75 Identities=12% Similarity=0.122 Sum_probs=46.3
Q ss_pred EEEEE-ecChhh---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004184 89 KVLLV-ENDDST---RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (770)
Q Consensus 89 rVLIV-DDd~~~---r~~L~~lLe~~G~eV~~-------A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~ 157 (770)
+|.+| .+.... ...++..|++.|+++.. ..+....+..+++ ..+|+|++= ....+...+++.+++.
T Consensus 136 ~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~--~~pd~v~~~-~~~~~~~~~~~~~~~~ 212 (336)
T cd06360 136 KVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPD--DVPDAVFVF-FAGGDAIKFVKQYDAA 212 (336)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHh--cCCCEEEEe-cccccHHHHHHHHHHc
Confidence 45444 444433 34556777777877652 3455667777776 678988863 3345567788888876
Q ss_pred cCCCCcchh
Q 004184 158 KTRKNLPVI 166 (770)
Q Consensus 158 ~~~~~IPII 166 (770)
....++|++
T Consensus 213 g~~~~~~~~ 221 (336)
T cd06360 213 GLKAKIPLI 221 (336)
T ss_pred CCccCCeEE
Confidence 644455655
No 328
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=24.34 E-value=2.7e+02 Score=33.14 Aligned_cols=100 Identities=8% Similarity=0.145 Sum_probs=49.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~-dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPI 165 (770)
+..|++||.|+...+.+ ++.|+.++..+ .-.+.|+.+.- .+.|.|++-.--+.+-..++..+|+.. ++++|
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~~~~~iv~~~~~~~--~~~~i 511 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGYEAGEIVASAREKR--PDIEI 511 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChHHHHHHHHHHHHHC--CCCeE
Confidence 45567777766543333 23466655433 22334444332 456766654311112223555566553 56666
Q ss_pred hhh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 166 IIF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 166 Ivl--------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|+. ...+.|++..+ -| ..++...+.+.+.
T Consensus 512 iar~~~~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l~ 548 (558)
T PRK10669 512 IARAHYDDEVAYITERGANQVV-MG--EREIARTMLELLE 548 (558)
T ss_pred EEEECCHHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHhc
Confidence 632 34578888655 33 3444445544443
No 329
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.28 E-value=4.4e+02 Score=30.01 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.0
Q ss_pred hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
++..|+.|+++.|++|-++.+++.+...+-.
T Consensus 139 ~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 139 ALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred HHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 4478999999999999999999987765543
No 330
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.26 E-value=2.4e+02 Score=34.00 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=35.7
Q ss_pred cEEEEEecChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+||+-|... .+.+..+-+..|+.+..+.+..+....+.. -..+|+||+|.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~~~DLVLIDT 436 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LRDYKLVLIDT 436 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hccCCEEEecC
Confidence 578888866522 234444445567777777777777777664 24699999998
No 331
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=24.15 E-value=3.4e+02 Score=31.16 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=37.6
Q ss_pred CcEEEEEecChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
+.+|+||.-|..- ...|+.+.+..|+.+..+.+..+....+... ..+|+||+|.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDT 262 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDT 262 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcC
Confidence 5689888887632 2334555555688888888877766666543 5799999998
No 332
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=24.10 E-value=2.9e+02 Score=28.07 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
+.+.+|.++...... ..+...+.. ++.+..+.+..+++++|.. .++|+++.|. ..+...+++......+.
T Consensus 129 l~g~~i~~~~g~~~~-~~l~~~~~~-~~~~~~~~s~~~~~~~L~~--g~vD~~v~~~------~~~~~~~~~~~~~~~l~ 198 (250)
T TIGR01096 129 LDGKTVGVQSGTTHE-QYLKDYFKP-GVDIVEYDSYDNANMDLKA--GRIDAVFTDA------SVLAEGFLKPPNGKDFK 198 (250)
T ss_pred cCCCEEEEecCchHH-HHHHHhccC-CcEEEEcCCHHHHHHHHHc--CCCCEEEeCH------HHHHHHHHhCCCCCceE
Confidence 446688887665443 334444433 6778888999999999987 8999999985 22222333322111122
Q ss_pred hhhhhhHh----cCC-CcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 165 VIIFKCLS----KGA-VDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 165 IIvl~al~----aGA-ddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
++ -..+. .+. ..|..++ .-.+|...|.+.+.....
T Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ln~~l~~l~~ 238 (250)
T TIGR01096 199 FV-GPSVTDEKYFGDGYGIGLRK-GDTELKAAFNKALAAIRA 238 (250)
T ss_pred Ee-ccccccccccCCceEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 21 11111 111 2344455 347799999998887643
No 333
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.97 E-value=2.4e+02 Score=32.28 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=39.7
Q ss_pred cEEEEEecChh---hHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCH
Q 004184 88 LKVLLVENDDS---TRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSG 147 (770)
Q Consensus 88 lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdG 147 (770)
.+|.+|..|.. -.+.|+.+.+.+|+.+..+.+..+....+.. -..+|+||+|. +...+.
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~~DlVLIDTaG~~~~d~ 231 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRNKHMVLIDTIGMSQRDR 231 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcCCCEEEEcCCCCCcccH
Confidence 47888876664 3456666667778888877776665555543 24579999998 554443
No 334
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=23.96 E-value=4.3e+02 Score=30.46 Aligned_cols=105 Identities=9% Similarity=0.049 Sum_probs=66.6
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCE----EEEECCHHHHHHHHHhcCCCceEEEEcc--CC-CCCH-HHHHHHHHhhcCC
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYE----VTEATNGLQAWKILEDLTNHIDLVLTEV--MP-CLSG-VALLSKIMSHKTR 160 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~e----V~~A~dg~EALe~L~~~~~~pDLVLlDi--MP-gmdG-leLlr~IR~~~~~ 160 (770)
.|.-||-....+...++-++-.|+. -....|.-+.|+.++..+..|||||+|- +- ...+ +.+.+....
T Consensus 242 ~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~---- 317 (393)
T COG1092 242 EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKD---- 317 (393)
T ss_pred ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHH----
Confidence 7899999999999999999888874 2377788888888877667999999997 32 1112 223322211
Q ss_pred CCcchhhhhhHhcCCCcEEe---CCCCHHHHHHHHHHHHHHh
Q 004184 161 KNLPVIIFKCLSKGAVDFLV---KPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 161 ~~IPIIvl~al~aGAddyL~---KP~~~eeL~~~L~~vlrr~ 199 (770)
+-...++.+.-|..-++. -++..+.+...|...+...
T Consensus 318 --l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~ 357 (393)
T COG1092 318 --LNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAA 357 (393)
T ss_pred --HHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhc
Confidence 111122333333333222 3677888888887766553
No 335
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.77 E-value=8.4e+02 Score=27.02 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=64.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHH---hCCCEEEEE-----CCHHHHHHHHHhc--CCCceEEEEcc-CC-CCCHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR---NCGYEVTEA-----TNGLQAWKILEDL--TNHIDLVLTEV-MP-CLSGVALLSK 153 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A-----~dg~EALe~L~~~--~~~pDLVLlDi-MP-gmdGleLlr~ 153 (770)
..+-|++|.|++.....++...+ +.|+.+... .+-++.++.+.+. ...+|=||+-+ +| ..+-..++..
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~ 112 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQA 112 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhc
Confidence 34678999999987776665554 568876644 3566677777653 24567899988 87 5676667666
Q ss_pred HHhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHH
Q 004184 154 IMSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQH 194 (770)
Q Consensus 154 IR~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~ 194 (770)
|.-. +++==+ -+-.+..|-.. ..|.++..+.++|+.
T Consensus 113 I~p~---KDVDGl~~~n~g~l~~~~~~--~~PcTp~ai~~ll~~ 151 (296)
T PRK14188 113 IDPE---KDVDGLHVVNAGRLATGETA--LVPCTPLGCMMLLRR 151 (296)
T ss_pred cCcc---cccccCChhhHHHHhCCCCC--CcCCCHHHHHHHHHH
Confidence 6422 222111 11112233222 358888887777765
No 336
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=23.65 E-value=5.5e+02 Score=29.21 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 120 g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
.++..+++.......|++++=..-+.-|+-+++.+.. .+|||+. +.+..|..+||..|-++++|..+|.
T Consensus 327 ~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~-----G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~ 401 (439)
T TIGR02472 327 PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAAC-----GLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALE 401 (439)
T ss_pred HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHh-----CCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHH
Confidence 4444444443101235554422112235667776642 4677743 4566678899999999999999999
Q ss_pred HHHH
Q 004184 194 HVWR 197 (770)
Q Consensus 194 ~vlr 197 (770)
.++.
T Consensus 402 ~ll~ 405 (439)
T TIGR02472 402 DALS 405 (439)
T ss_pred HHHh
Confidence 8875
No 337
>PRK07695 transcriptional regulator TenI; Provisional
Probab=23.64 E-value=6.6e+02 Score=25.45 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=38.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCCcE
Q 004184 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAVDF 178 (770)
Q Consensus 116 ~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAddy 178 (770)
.+.+.+++.+... ...|.|++.. .|. ..|++.+++++.. ..+||+++ .++..|++.+
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGITPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCCCHHHHHHHHHcCCCEE
Confidence 6677777765443 4678888765 432 2367888888754 35888844 6678898876
No 338
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.46 E-value=2.4e+02 Score=28.78 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=48.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC--CCEEEEEC------CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC--GYEVTEAT------NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~--G~eV~~A~------dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
...+|.++-..+.+.+.+.+.|+.. |.++.... ..++.++.+.+ ..+|||++-+ +|...- ++.+.+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~PkQE~--~~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPKQEI--WMRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcHhHH--HHHHhHH
Confidence 4579999999999999999888865 56665331 12344667776 7899999999 997653 3455544
No 339
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=23.39 E-value=6.2e+02 Score=26.41 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 120 GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 120 g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
.++..+++.. .|++|+-...+.-|..+++.+. ..+|||+. ..+..+-.+++..|.+.++|...|.
T Consensus 257 ~~~~~~~~~~----~d~~l~~s~~e~~~~~~lEa~a-----~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~ 327 (364)
T cd03814 257 GEELAAAYAS----ADVFVFPSRTETFGLVVLEAMA-----SGLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALA 327 (364)
T ss_pred HHHHHHHHHh----CCEEEECcccccCCcHHHHHHH-----cCCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHH
Confidence 3444444433 4665553322333556666663 35677743 3455567889999999999999998
Q ss_pred HHHH
Q 004184 194 HVWR 197 (770)
Q Consensus 194 ~vlr 197 (770)
.++.
T Consensus 328 ~l~~ 331 (364)
T cd03814 328 ALLA 331 (364)
T ss_pred HHHc
Confidence 8875
No 340
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=23.27 E-value=1.3e+02 Score=30.35 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=25.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEA 117 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A 117 (770)
|||||-...+...|.+.|+..|+++...
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999988755
No 341
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.23 E-value=2e+02 Score=30.99 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=39.0
Q ss_pred CcEEEEE-ecChhhHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 87 SLKVLLV-ENDDSTRHVVAALLRNCGYEVTEATN-------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV-DDd~~~r~~L~~lLe~~G~eV~~A~d-------g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
+..|.++ .++.. .+.+.|+..||.|....+ ..+.++++++ ..||+||+|.. ..+. +..+.++.
T Consensus 31 g~~v~f~~~~~~~---~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~vV~D~y-~~~~-~~~~~~k~ 101 (279)
T TIGR03590 31 GAEVAFACKPLPG---DLIDLLLSAGFPVYELPDESSRYDDALELINLLEE--EKFDILIVDHY-GLDA-DWEKLIKE 101 (279)
T ss_pred CCEEEEEeCCCCH---HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHh--cCCCEEEEcCC-CCCH-HHHHHHHH
Confidence 3455444 44333 235677889999886643 4467778876 68999999971 1122 34556654
No 342
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=23.17 E-value=75 Score=35.09 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=27.2
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYE-VT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~e-V~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
+|+|||=|+-....+..+.++.||. +. .+-|...++-.-.. ..||++++|-
T Consensus 177 ~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~--~kFDvfiTDP 229 (354)
T COG1568 177 RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK--RKFDVFITDP 229 (354)
T ss_pred eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH--hhCCeeecCc
Confidence 5666666666666666666666665 32 33344443322222 4567777764
No 343
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=23.17 E-value=4.1e+02 Score=28.39 Aligned_cols=73 Identities=12% Similarity=0.018 Sum_probs=47.2
Q ss_pred EEEE-EecChhh---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004184 89 KVLL-VENDDST---RHVVAALLRNCGYEVTE-------ATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (770)
Q Consensus 89 rVLI-VDDd~~~---r~~L~~lLe~~G~eV~~-------A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~ 157 (770)
+|.| .+|++.- ...++..|++.|.+|+. ..+....+..++. ..+|+||+-.. ..++..+++.+++.
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~--~~pd~v~~~~~-~~~~~~~~~~~~~~ 215 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAA--GGPDALVVIGY-PETGSGILRSAYEQ 215 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHh--cCCCEEEEecc-cchHHHHHHHHHHc
Confidence 4433 3444433 34566777788988763 2366677888876 78999987542 23788889998876
Q ss_pred cCCCCcchh
Q 004184 158 KTRKNLPVI 166 (770)
Q Consensus 158 ~~~~~IPII 166 (770)
.. ..++|
T Consensus 216 G~--~~~~~ 222 (312)
T cd06346 216 GL--FDKFL 222 (312)
T ss_pred CC--CCceE
Confidence 53 34444
No 344
>PRK04296 thymidine kinase; Provisional
Probab=23.09 E-value=74 Score=32.27 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=55.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc--C-CCCCHHHHHHHHHhhcCCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV--M-PCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi--M-PgmdGleLlr~IR~~~~~~ 161 (770)
+.+|+|+-..-..+.....++...|+.+. .+....++++.+.+....+|+|++|- + +...-.++++.++. .
T Consensus 30 g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~~----~ 105 (190)
T PRK04296 30 GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLDD----L 105 (190)
T ss_pred CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHHH----c
Confidence 45788773311223334445556665443 35667777777653235789999995 3 33223456665553 3
Q ss_pred CcchhhhhhHhcCCCcEEeCCCCH-HHHHHHHHHH
Q 004184 162 NLPVIIFKCLSKGAVDFLVKPIRK-NELKNLWQHV 195 (770)
Q Consensus 162 ~IPIIvl~al~aGAddyL~KP~~~-eeL~~~L~~v 195 (770)
.+.||+. . -..+|..+||.. .+|......+
T Consensus 106 g~~vi~t-g---l~~~~~~~~f~~~~~L~~~aD~V 136 (190)
T PRK04296 106 GIPVICY-G---LDTDFRGEPFEGSPYLLALADKV 136 (190)
T ss_pred CCeEEEE-e---cCcccccCcCchHHHHHHhcCeE
Confidence 4555542 1 123577778855 4666555444
No 345
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=23.08 E-value=2.9e+02 Score=27.87 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=41.7
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~-dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
.+...+||||---......+..+|...|+.|..+. +..+..+.+.+ .|+||.-. -|.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~----aDiVIsat~~~~ 99 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQ----ADIVIVAVGKPG 99 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhh----CCEEEEcCCCCc
Confidence 46778999999998888888888888898876444 44455555543 78888776 553
No 346
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=22.96 E-value=1.4e+02 Score=30.27 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=34.5
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|||||----+...+.++|+..|+++..+.+..+ + ..+|.||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~----l----~~~d~iii 42 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEE----I----LSADKLIL 42 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHH----h----ccCCEEEE
Confidence 688999888999999999999999998887543 3 34788887
No 347
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=22.91 E-value=3.3e+02 Score=28.99 Aligned_cols=90 Identities=11% Similarity=0.067 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 100 RHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
...+...+.+.||.+..+.. . .+.++.+.. ..+|-||+-. ....... ..+.. ...+|||++....
T Consensus 75 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~~~~~~~---~~l~~---~~~iPvV~i~~~~ 146 (327)
T PRK10423 75 VRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQ--KRVDGLLLLCTETHQPSR---EIMQR---YPSVPTVMMDWAP 146 (327)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEeCCCcchhhH---HHHHh---cCCCCEEEECCcc
Confidence 34455666778999875433 2 244555555 6788777643 2221122 22322 1368888764321
Q ss_pred -cCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 173 -KGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 173 -aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+..+++ ..-....-..++++++.+
T Consensus 147 ~~~~~~~v-~~d~~~~~~~a~~~L~~~ 172 (327)
T PRK10423 147 FDGDSDLI-QDNSLLGGDLATQYLIDK 172 (327)
T ss_pred CCCCCCEE-EEChHHHHHHHHHHHHHc
Confidence 1112232 222233345555566554
No 348
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=22.90 E-value=64 Score=37.43 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 26 ENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 26 ~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
..+|++++++.+||.+.+.+..+. | ++|++.+|.
T Consensus 526 GL~i~~~iv~~~~G~i~v~s~~~~----G--t~~~i~lP~ 559 (565)
T PRK10935 526 GLNIMQERAERLGGTLTISQPPGG----G--TTVSLTFPS 559 (565)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCC----c--EEEEEEECC
Confidence 478999999999999988777664 4 445555443
No 349
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional
Probab=22.82 E-value=3.1e+02 Score=28.51 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=40.5
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+.+|-++.+.... ..+...+...++.++.+.+.++++++|.. .++|+++.|.
T Consensus 130 dl~g~~Igv~~gs~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--griDa~i~d~ 184 (260)
T PRK15010 130 SLKGKHVGVLQGSTQE-AYANETWRSKGVDVVAYANQDLVYSDLAA--GRLDAALQDE 184 (260)
T ss_pred HcCCCEEEEecCchHH-HHHHHhcccCCceEEecCCHHHHHHHHHc--CCccEEEeCc
Confidence 4466788888877532 23444444456777778899999999987 8999999985
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.81 E-value=2.4e+02 Score=32.94 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCcEEEEEecChhhH---HHHHHHHHhCCCEEEEECCH-------HHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEATNG-------LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r---~~L~~lLe~~G~eV~~A~dg-------~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+||+-|..-. +.|+.+-+..+..+....+. .++++.++. ..+|+||+|.
T Consensus 127 ~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDT 190 (429)
T TIGR01425 127 KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDT 190 (429)
T ss_pred CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 456899998876432 22333333445555543322 245666655 5799999998
No 351
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=22.68 E-value=4.9e+02 Score=33.17 Aligned_cols=145 Identities=17% Similarity=0.183 Sum_probs=90.1
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHHH
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVV 103 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L 103 (770)
.-..+|+++|+++|||.+.+.+..+. |.. |++.+|........... .......+++++.++......+
T Consensus 632 GLGL~I~k~lv~~~gG~I~v~S~~g~----Gt~--F~i~LP~~~~~~~~~~~------~~~~~g~~i~l~~~~~~~~~~l 699 (924)
T PRK10841 632 GLGLAICEKLINMMDGDISVDSEPGM----GSQ--FTIRIPLYGAQYPQKKG------VEGLQGKRCWLAVRNASLEQFL 699 (924)
T ss_pred ehhHHHHHHHHHHCCCEEEEEEcCCC----cEE--EEEEEECCccccccccc------CcccCCCEEEEEcCCHHHHHHH
Confidence 34589999999999999999877665 444 44444443221111111 1223567899999999999999
Q ss_pred HHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCC-CHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeC
Q 004184 104 AALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCL-SGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVK 181 (770)
Q Consensus 104 ~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgm-dGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~K 181 (770)
..+|+.+|+.+..+.... ....|++|+|. .... .....+. +.... ... ........++.+
T Consensus 700 ~~~l~~~G~~v~~~~~~~---------~~~~d~~i~d~~~~~~~~~~~~~~-~~~~~--~~~------~~~~~~~~~~~~ 761 (924)
T PRK10841 700 ETLLQRSGIQVQRYEGQE---------PTPEDVLITDDPVQKKWQGRAVIT-FCRRH--IGI------PLEIAPGEWVHS 761 (924)
T ss_pred HHHHHHCCCeEEEccccc---------CCcCcEEEEcCccccccchhhhhh-hhhcc--ccC------hhhcccCceeec
Confidence 999999999988665211 13468999998 5322 1111111 10000 000 112233457788
Q ss_pred CCCHHHHHHHHHHHHHH
Q 004184 182 PIRKNELKNLWQHVWRR 198 (770)
Q Consensus 182 P~~~eeL~~~L~~vlrr 198 (770)
|....++...+..+...
T Consensus 762 ~~~~~~l~~~l~~~~~~ 778 (924)
T PRK10841 762 TATPHELPALLARIYRI 778 (924)
T ss_pred cCChHHHHHHHHHHhhc
Confidence 99999998888777653
No 352
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=22.60 E-value=8.2e+02 Score=26.29 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C--CCCCHHHHHHHHHhhcCCCCcchhh----
Q 004184 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRKNLPVII---- 167 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M--PgmdGleLlr~IR~~~~~~~IPIIv---- 167 (770)
+.....+....+.+|.++. .+.+.+|+...+. ..+|+|-+.- + -..+ ++.+.+|...- ...+++|.
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~~-p~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPLI-PSDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHhC-CCCCEEEEEeCC
Confidence 3344445555566788865 8889998866654 4578776542 2 1223 66666665532 12346663
Q ss_pred ------hhhHhcCCCcEEe
Q 004184 168 ------FKCLSKGAVDFLV 180 (770)
Q Consensus 168 ------l~al~aGAddyL~ 180 (770)
..++..|++.+|.
T Consensus 221 ~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 2677889999754
No 353
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.54 E-value=2.1e+02 Score=34.61 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~d-g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+..+++||.|+...+.+ ++.|+.++..+- -.+.|+.+.- .+.|+||+-.--+.+-..++..+|+.. ++++
T Consensus 422 ~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~~~n~~i~~~~r~~~--p~~~ 493 (601)
T PRK03659 422 NKMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEPEDTMKIVELCQQHF--PHLH 493 (601)
T ss_pred CCCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCHHHHHHHHHHHHHHC--CCCe
Confidence 345667777776644433 335666554332 2233333322 455666654411233455667777653 6777
Q ss_pred hhhh--------hhHhcCCCcEEe
Q 004184 165 VIIF--------KCLSKGAVDFLV 180 (770)
Q Consensus 165 IIvl--------~al~aGAddyL~ 180 (770)
||+. ...++|++.++.
T Consensus 494 IiaRa~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 494 ILARARGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEEEeCCHHHHHHHHhCCCCEEEc
Confidence 7743 557889987764
No 354
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.48 E-value=3.3e+02 Score=29.31 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCc
Q 004184 98 STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVD 177 (770)
Q Consensus 98 ~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~aGAdd 177 (770)
.....+...|.+.|+.+....+.. ......|+||+ -|.||. +++.++.. .+||+-+ ..|-.+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~---iGGDGT-~L~a~~~~----~~Pilgi---n~G~lG 74 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV---VGGDGT-VLKAAKKV----GTPLVGF---KAGRLG 74 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE---ECCcHH-HHHHHHHc----CCCEEEE---eCCCCc
Confidence 344556777777888877664433 11245677776 367774 45556543 6888744 457788
Q ss_pred EEeCCCCHHHHHHHHHHHHHH
Q 004184 178 FLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 178 yL~KP~~~eeL~~~L~~vlrr 198 (770)
||. .+.++++...|.+++..
T Consensus 75 fl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 75 FLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred ccc-ccCHHHHHHHHHHHHcC
Confidence 887 68899999999888764
No 355
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=22.45 E-value=9.2e+02 Score=25.35 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=62.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHH-HHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEA---------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVA-LLSKIM 155 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A---------~dg~EALe~L~~~~~~pDLVLlDiMPgmdGle-Llr~IR 155 (770)
...+||++--+. -+..|...|+..|+.|..+ ....+.++.+.. ..+|+|++=- -.+++ +++.+.
T Consensus 129 ~~~~vLi~rg~~-~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~--~~~d~v~ftS---~~~~~~~~~~~~ 202 (255)
T PRK05752 129 PDPRVLIMRGEG-GRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEA--ERLNGLVVSS---GQGFEHLQQLAG 202 (255)
T ss_pred CCCEEEEEccCc-cHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHh--CCCCEEEECC---HHHHHHHHHHhC
Confidence 456899887774 5678999999999776522 124556666765 6788887742 11222 222221
Q ss_pred hh-cCCCCcchhhh------hhHhcCCCcE-EeCCCCHHHHHHHHHHH
Q 004184 156 SH-KTRKNLPVIIF------KCLSKGAVDF-LVKPIRKNELKNLWQHV 195 (770)
Q Consensus 156 ~~-~~~~~IPIIvl------~al~aGAddy-L~KP~~~eeL~~~L~~v 195 (770)
.. .....++++++ .+.+.|+... +.+-.+.+.|.++|..+
T Consensus 203 ~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~~a~~~t~~~L~~al~~~ 250 (255)
T PRK05752 203 ADWPELARLPLFVPSPRVAEQARAAGAQTVVDCRGASAAALLAALRRQ 250 (255)
T ss_pred hhHHHhcCceEEEeCHHHHHHHHHcCCCceeeCCCCChHHHHHHHHhc
Confidence 10 01234555544 4567787544 67777888888887643
No 356
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.41 E-value=1.4e+02 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred EEEEecChhhH-------HHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004184 90 VLLVENDDSTR-------HVVAALLRNCG-YE-VTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (770)
Q Consensus 90 VLIVDDd~~~r-------~~L~~lLe~~G-~e-V~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR 155 (770)
|||-|++-... ..+..+=+... .. .+.+.+.++|.+++. ..+|+|++|-|+..+-.++++.|+
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~---~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQ---ASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH---cCcCEEEECCCCHHHHHHHHHHHh
Confidence 66666654433 33333322221 22 348889999999986 458999999754444455555554
No 357
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=22.29 E-value=5.4e+02 Score=27.36 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhh-Hhc
Q 004184 102 VVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKC-LSK 173 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~a-l~a 173 (770)
.+...++..||.+..+.. .+ +.++.+.. ..+|-||+-. .+.. .+.++.+.+ ..+|+|++.. ...
T Consensus 82 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~--~~~~~~l~~----~~iPvV~v~~~~~~ 153 (328)
T PRK11303 82 YLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQ--RQVDALIVSTSLPPE--HPFYQRLQN----DGLPIIALDRALDR 153 (328)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEcCCCCCC--hHHHHHHHh----cCCCEEEECCCCCC
Confidence 455556678999875532 22 34555555 6789888754 3432 345566643 3578887632 221
Q ss_pred CCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 174 GAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 174 GAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
...+++. .-....-..+..+++.+
T Consensus 154 ~~~~~V~-~d~~~~~~~a~~~L~~~ 177 (328)
T PRK11303 154 EHFTSVV-SDDQDDAEMLAESLLKF 177 (328)
T ss_pred CCCCEEE-eCCHHHHHHHHHHHHHC
Confidence 1223333 33444555566666654
No 358
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=22.22 E-value=1.8e+02 Score=32.85 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=41.6
Q ss_pred cEEEEEecChh-----hHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004184 88 LKVLLVENDDS-----TRHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (770)
Q Consensus 88 lrVLIVDDd~~-----~r~~L~~lLe~~G~eV~~A~---------dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~ 153 (770)
-|+|||-|... ..+.+...|+..|+++..+. +..++++.+++ ..+|+||- +-|.+-+++.+.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~Iia--vGGGS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE--EGCDFVVG--LGGGSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCCccHHHHHHH
Confidence 48898888654 33567778888787766543 45577777776 77898874 234455555555
Q ss_pred H
Q 004184 154 I 154 (770)
Q Consensus 154 I 154 (770)
+
T Consensus 102 i 102 (380)
T cd08185 102 I 102 (380)
T ss_pred H
Confidence 4
No 359
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=22.18 E-value=2.1e+02 Score=32.90 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=48.4
Q ss_pred CcEEEEEecChhhHHHHH--HHHHhCC------CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH------HHHH
Q 004184 87 SLKVLLVENDDSTRHVVA--ALLRNCG------YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG------VALL 151 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~--~lLe~~G------~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG------leLl 151 (770)
-..|-+||=||.+.+..+ ..|+... -+|..+. ++|..+++.....||.||+|+ -|...- .|+.
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 457999999999999888 6666441 2454443 467788877667899999999 776442 4566
Q ss_pred HHHHhh
Q 004184 152 SKIMSH 157 (770)
Q Consensus 152 r~IR~~ 157 (770)
+.++.+
T Consensus 391 ~ll~~~ 396 (508)
T COG4262 391 RLLSRH 396 (508)
T ss_pred HHHHHh
Confidence 666544
No 360
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=22.14 E-value=7.2e+02 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 144 CLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 144 gmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+.=|+-+++.+. ..+|||+- ..+..|..+||..|.++++|.++|.+++.++
T Consensus 654 EpFGLvvLEAMA-----cGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kl 710 (784)
T TIGR02470 654 EAFGLTVLEAMT-----CGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKC 710 (784)
T ss_pred cCCCHHHHHHHH-----cCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHh
Confidence 334666666653 24677633 4567789999999999999999999887543
No 361
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.06 E-value=1.9e+02 Score=29.49 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=32.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|||||-.--+...+...|+..|+++....+.++ + ..+|+||+
T Consensus 2 i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~----l----~~~d~lil 43 (199)
T PRK13181 2 IAIIDYGAGNLRSVANALKRLGVEAVVSSDPEE----I----AGADKVIL 43 (199)
T ss_pred EEEEeCCCChHHHHHHHHHHCCCcEEEEcChHH----h----ccCCEEEE
Confidence 889996666778888899999999998877554 2 23788875
No 362
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=22.00 E-value=6.4e+02 Score=26.38 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCC--CCHHHHHHHHHhhcCCCCcchhhh-----hhHhcCCCcEEeCCCCHHHHHHHH
Q 004184 120 GLQAWKILEDLTNHIDLVLTEVMPC--LSGVALLSKIMSHKTRKNLPVIIF-----KCLSKGAVDFLVKPIRKNELKNLW 192 (770)
Q Consensus 120 g~EALe~L~~~~~~pDLVLlDiMPg--mdGleLlr~IR~~~~~~~IPIIvl-----~al~aGAddyL~KP~~~eeL~~~L 192 (770)
.++..+++.. .|++|+=...+ .-+.-+++.+. ..+|||+. ..+..+..+++..+-+.++|...|
T Consensus 258 ~~~~~~~~~~----ad~~v~ps~~e~~~~~~~~~Ea~a-----~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l 328 (366)
T cd03822 258 DEELPELFSA----ADVVVLPYRSADQTQSGVLAYAIG-----FGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAI 328 (366)
T ss_pred HHHHHHHHhh----cCEEEecccccccccchHHHHHHH-----cCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHH
Confidence 4555555543 45555433112 22334444442 34677754 234456678899999999999999
Q ss_pred HHHHH
Q 004184 193 QHVWR 197 (770)
Q Consensus 193 ~~vlr 197 (770)
..++.
T Consensus 329 ~~l~~ 333 (366)
T cd03822 329 RRLLA 333 (366)
T ss_pred HHHHc
Confidence 88875
No 363
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.94 E-value=1e+03 Score=26.31 Aligned_cols=106 Identities=17% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHH---hCCCEEEEEC-----CHHHHHHHHHhc--CCCceEEEEcc-CC-CCCHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR---NCGYEVTEAT-----NGLQAWKILEDL--TNHIDLVLTEV-MP-CLSGVALLSK 153 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A~-----dg~EALe~L~~~--~~~pDLVLlDi-MP-gmdGleLlr~ 153 (770)
..+-|++|.|++.....++...+ +.|+.+.... +-++.++.+++. ...+|=||+-+ +| .++-..++..
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~ 110 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDA 110 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence 34779999999998887777665 5587765433 556677777643 34568899988 87 6777777777
Q ss_pred HHhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 154 IMSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 154 IR~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
|.-. +++==+ =+-.+-.|-... ..|.++..+.++|++.
T Consensus 111 I~p~---KDVDGl~~~n~g~l~~g~~~~-~~PcTp~avi~ll~~~ 151 (282)
T PRK14182 111 ISPA---KDADGFHPFNVGALSIGIAGV-PRPCTPAGVMRMLDEA 151 (282)
T ss_pred cCcc---cCcCCCCHhHHHHHhCCCCCC-CCCCCHHHHHHHHHHh
Confidence 6422 232212 111122332221 3689888877777554
No 364
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=21.92 E-value=1e+03 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=23.6
Q ss_pred hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+..|+++|..=++-||+..+|..+++..+-++
T Consensus 83 a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 83 ARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 34667788888899999987777766665543
No 365
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.86 E-value=7e+02 Score=27.53 Aligned_cols=104 Identities=14% Similarity=0.288 Sum_probs=63.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHH---hCCCEEEEEC-----CHHHHHHHHHhcC--CCceEEEEcc-CC-CCCHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR---NCGYEVTEAT-----NGLQAWKILEDLT--NHIDLVLTEV-MP-CLSGVALLSK 153 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A~-----dg~EALe~L~~~~--~~pDLVLlDi-MP-gmdGleLlr~ 153 (770)
..+-|++|.|++.....++...+ +.|+.+.... +-++.++.+.+.. ..+|=||+-+ +| ..+-..+++.
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~ 112 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEA 112 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhh
Confidence 34678999999988777766654 5688766332 4566777776542 3456699988 87 5776667776
Q ss_pred HHhhcCCCCcchh----hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 154 IMSHKTRKNLPVI----IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 154 IR~~~~~~~IPII----vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
|.-. +++==+ +-+ +-.|-.. ..|.++..+.++|++.
T Consensus 113 I~p~---KDVDGl~~~n~g~-l~~~~~~--~~PcTp~aii~lL~~~ 152 (285)
T PRK14189 113 IAPE---KDVDGFHVANAGA-LMTGQPL--FRPCTPYGVMKMLESI 152 (285)
T ss_pred cCcc---cCcccCChhhhhH-hhCCCCC--CcCCCHHHHHHHHHHc
Confidence 6422 222111 111 1123233 3588888877777654
No 366
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.85 E-value=3.9e+02 Score=27.40 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCC-CH-HHHHHHHHhhcCCCCcchhhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCL-SG-VALLSKIMSHKTRKNLPVIIFK 169 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPgm-dG-leLlr~IR~~~~~~~IPIIvl~ 169 (770)
+...+...+++.||.+..+.. .+ +.++.+.. ..+|-||+.. .+.. .. .+.+..+.. ..+|||++.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~ 90 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLA--RGVRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVN 90 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--cCCCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEc
Confidence 345566667788999875432 22 45666665 6789877754 4332 21 233455543 367888763
No 367
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.80 E-value=2.9e+02 Score=32.40 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCcEEEEEecCh---hhHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEATN-------GLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~---~~r~~L~~lLe~~G~eV~~A~d-------g~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+||||--|. ...+.|+.+-++.+..++.-.+ ..+|++.++. ..+|+||+|.
T Consensus 127 ~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~--~~~DvvIvDT 190 (451)
T COG0541 127 KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE--EGYDVVIVDT 190 (451)
T ss_pred cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH--cCCCEEEEeC
Confidence 678899998773 3445566666666665553222 3566777776 7799999997
No 368
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=21.76 E-value=1.8e+02 Score=31.92 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=37.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEcc-CCCCCH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG 147 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A-------~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG 147 (770)
|+|||+-..-.+-..|.++|. .+++|+.. .+.+...+.+++ .+||+||--. +...|.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~--~~PDvVIn~AAyt~vD~ 65 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRE--TRPDVVINAAAYTAVDK 65 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHh--hCCCEEEECcccccccc
Confidence 358999999888888888887 55676643 244555566655 5677777655 554443
No 369
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.75 E-value=6.6e+02 Score=24.99 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 101 HVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
..++..++..|+.+...... .++++.+.. ..+|.||+.. .+. ... ++.+.. ..+|||++
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iii~~~~~~--~~~-~~~~~~----~~ipvv~~ 84 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLS--RRVDGIILAPSRLD--DEL-LEELAA----LGIPVVLV 84 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCcCEEEEecCCcc--hHH-HHHHHH----cCCCEEEe
Confidence 44555566778887755443 244555544 5788888765 322 222 444443 46888866
No 370
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.74 E-value=7.3e+02 Score=26.05 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEE------------------cc--
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT----NGLQAWKILEDLTNHIDLVLT------------------EV-- 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~----dg~EALe~L~~~~~~pDLVLl------------------Di-- 141 (770)
.++-.+|-.++......+.+.|...|++++.+. .+.++++.+++ .-++++|- |+
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~--~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK--EVPEALIGAGTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH--HCCCCEEEEeeccCHHHHHHHHHcCCCEEE
Q ss_pred CCCCCHHHHHHHHHhhcCCCCcchh--------hhhhHhcCCCcEEeCC
Q 004184 142 MPCLSGVALLSKIMSHKTRKNLPVI--------IFKCLSKGAVDFLVKP 182 (770)
Q Consensus 142 MPgmdGleLlr~IR~~~~~~~IPII--------vl~al~aGAddyL~KP 182 (770)
.|+.+- ++++.-++.. +|+| +..+++.|++-+-+-|
T Consensus 93 sP~~~~-~vi~~a~~~~----i~~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 93 SPGLTP-PLLKAAQEGP----IPLIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCCCCH-HHHHHHHHcC----CCEeCCCCCHHHHHHHHHCCCCEEEEcc
No 371
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=21.66 E-value=6.4e+02 Score=25.91 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=49.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHK 158 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~ 158 (770)
...+++-+. ... .+...++..+..+. .+.+.+++..+. + ...|.|+++- -++ ...+++++++++..
T Consensus 81 ~d~v~l~~~-~~~-~~~~~~~~~~i~~i~~v~~~~~~~~~~-~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~ 155 (236)
T cd04730 81 VPVVSFSFG-PPA-EVVERLKAAGIKVIPTVTSVEEARKAE-A--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV 155 (236)
T ss_pred CCEEEEcCC-CCH-HHHHHHHHcCCEEEEeCCCHHHHHHHH-H--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh
Confidence 344555444 222 33444555566655 445666655544 3 4478888754 221 24577888887642
Q ss_pred CCCCcchhh----------hhhHhcCCCcEEeC
Q 004184 159 TRKNLPVII----------FKCLSKGAVDFLVK 181 (770)
Q Consensus 159 ~~~~IPIIv----------l~al~aGAddyL~K 181 (770)
.+||++ .+++..|++.++.-
T Consensus 156 ---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 156 ---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred ---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 578873 25678888887653
No 372
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.59 E-value=4.4e+02 Score=26.66 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d------g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+.+.+++.||.+..+.. ..++++.+.. ..+|.||+.. .+... +.+.+. ..+|+|++
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiii~~~~~~~~---~~~~~~-----~~ipvv~~ 83 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRR--KQADGIILLDGSLPPT---ALTALA-----KLPPIVQA 83 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCHH---HHHHHh-----cCCCEEEE
Confidence 345667777788999875553 2244555555 6789777744 32222 233331 36788866
No 373
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.49 E-value=2.1e+02 Score=29.27 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhCCCEEEEE-C---CHH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhH
Q 004184 99 TRHVVAALLRNCGYEVTEA-T---NGL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCL 171 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A-~---dg~---EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al 171 (770)
+...++..++..|+++..+ . +.. +.++.+.. ..+|.||+.........+++++++.. .||||.+...
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~--~~~d~Iiv~~~~~~~~~~~l~~~~~~----gIpvv~~d~~ 89 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAIS--QGVDGIIVSPVDPDSLAPFLEKAKAA----GIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHH--TTESEEEEESSSTTTTHHHHHHHHHT----TSEEEEESST
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHH--hcCCEEEecCCCHHHHHHHHHHHhhc----CceEEEEecc
Confidence 3455677777889988764 2 223 33333333 57999998773333455888888764 5899976332
Q ss_pred ---hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 ---SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ---~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
......|+. .+..++-..+...+..
T Consensus 90 ~~~~~~~~~~v~--~d~~~~G~~~a~~l~~ 117 (257)
T PF13407_consen 90 EAPDSPRAAYVG--TDNYEAGKLAAEYLAE 117 (257)
T ss_dssp HHTTSTSSEEEE--E-HHHHHHHHHHHHHH
T ss_pred ccccccceeeee--ccHHHHHHHHHHHHHH
Confidence 223333332 3555665555555544
No 374
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.44 E-value=1.2e+02 Score=30.49 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcC--CCCcchhh
Q 004184 101 HVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVII 167 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-------leLlr~IR~~~~--~~~IPIIv 167 (770)
......++..|..+.. ..+..+.++.+.. .+|.|+++. -|+..| ++.++++++... .+.+||++
T Consensus 94 ~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v 170 (210)
T TIGR01163 94 HRLLQLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV 170 (210)
T ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 3344556666765442 3345666665542 368788776 565444 344455543311 12356643
Q ss_pred h---------hhHhcCCCcEEe
Q 004184 168 F---------KCLSKGAVDFLV 180 (770)
Q Consensus 168 l---------~al~aGAddyL~ 180 (770)
. ++++.|++.++.
T Consensus 171 ~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 171 DGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred ECCcCHHHHHHHHHcCCCEEEE
Confidence 2 567888887654
No 375
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=21.40 E-value=1.3e+02 Score=30.03 Aligned_cols=85 Identities=12% Similarity=0.127 Sum_probs=45.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEE--------------EECCHHHHHHHHHhc--CCCceEEEEcc--CCCCCH
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT--------------EATNGLQAWKILEDL--TNHIDLVLTEV--MPCLSG 147 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~--------------~A~dg~EALe~L~~~--~~~pDLVLlDi--MPgmdG 147 (770)
+.+||||+..-..+.+.+.+.|+...+.+. .+-.-.-....+... ...||+||+|- .-+-.-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~s 111 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTS 111 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHH
Confidence 568999999999999999999987653322 111222333433321 24699999996 434334
Q ss_pred HHHHHHHHhhcCCCCcchhhhhh
Q 004184 148 VALLSKIMSHKTRKNLPVIIFKC 170 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPIIvl~a 170 (770)
+.+.-.|+.........+|.+.|
T Consensus 112 IA~rg~l~~~~~~g~~~~i~mTA 134 (148)
T PF07652_consen 112 IAARGYLRELAESGEAKVIFMTA 134 (148)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEES
T ss_pred HhhheeHHHhhhccCeeEEEEeC
Confidence 44444444433223344554444
No 376
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=21.30 E-value=3.9e+02 Score=29.91 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=47.7
Q ss_pred cEEEEEecChhh----HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDST----RHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~----r~~L~~lLe~~G~eV~~---A----~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
.+|.+|-++... ...++..|+..|.+|+. + .+....+..++. ..||+||+-. .+.+...+++++++
T Consensus 134 ~~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~--~~pD~V~~~~-~g~~~~~~~kq~~~ 210 (374)
T TIGR03669 134 KKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQK--ADPDFVMSML-VGANHASFYEQAAS 210 (374)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEecCCCcchHHHHHHHHHH--cCCCEEEEcC-cCCcHHHHHHHHHH
Confidence 356555554333 34567778888988752 2 245566777776 7799999743 34567888999988
Q ss_pred hcCCCCcchh
Q 004184 157 HKTRKNLPVI 166 (770)
Q Consensus 157 ~~~~~~IPII 166 (770)
... .+|++
T Consensus 211 ~G~--~~~~~ 218 (374)
T TIGR03669 211 ANL--NLPMG 218 (374)
T ss_pred cCC--CCccc
Confidence 753 34444
No 377
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.30 E-value=3.8e+02 Score=30.15 Aligned_cols=63 Identities=21% Similarity=0.167 Sum_probs=39.9
Q ss_pred cEEEEEecChhh----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHH
Q 004184 88 LKVLLVENDDST----RHVVAALLRNCGYEVTEATN---------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKI 154 (770)
Q Consensus 88 lrVLIVDDd~~~----r~~L~~lLe~~G~eV~~A~d---------g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~I 154 (770)
.+||||-|.... .+.+...|+..|+++..+.. ..++++.+++ ..+|+||- +-|.+-+++.+.+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~d~IIa--iGGGS~~D~aK~i 102 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRE--NGCDAILA--VGGGSVIDCAKAI 102 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--eCCccHHHHHHHH
Confidence 489999876442 34566778777877765543 4577888877 77888774 2344444444443
No 378
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=21.30 E-value=6.7e+02 Score=25.14 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCH-HHHHHHHHhhcCCCCcchhhhh
Q 004184 100 RHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSG-VALLSKIMSHKTRKNLPVIIFK 169 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDiMPgmdG-leLlr~IR~~~~~~~IPIIvl~ 169 (770)
...+...++..||.+..+.. .. ++++.+.. ..+|.||+-... .+. .+.++.++. ..+|+|++.
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgvi~~~~~-~~~~~~~~~~l~~----~~ip~V~~~ 87 (267)
T cd01536 18 NKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIA--QGVDGIIISPVD-SAALTPALKKANA----AGIPVVTVD 87 (267)
T ss_pred HHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCC-chhHHHHHHHHHH----CCCcEEEec
Confidence 34445556677998876554 22 34444444 578988774321 122 235566654 357888763
No 379
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.15 E-value=9.3e+02 Score=26.63 Aligned_cols=104 Identities=21% Similarity=0.275 Sum_probs=64.0
Q ss_pred CcEEEEEecChhhHHHHHHHHH---hCCCEEEEEC-----CHHHHHHHHHhc--CCCceEEEEcc-CC-CCCHHHHHHHH
Q 004184 87 SLKVLLVENDDSTRHVVAALLR---NCGYEVTEAT-----NGLQAWKILEDL--TNHIDLVLTEV-MP-CLSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A~-----dg~EALe~L~~~--~~~pDLVLlDi-MP-gmdGleLlr~I 154 (770)
.+-|++|.|++.....++...+ +.|+++.... +-++.++.+++. ...+|=||+-+ +| ..+-..++..|
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I 112 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELI 112 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhcc
Confidence 4678999999988877766554 5688766432 446677777653 24567899988 87 57776677666
Q ss_pred HhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 155 R~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.- .+++==+ =+-.+-.|-..| .|.++..+.++|++.
T Consensus 113 ~p---~KDVDGl~~~N~g~l~~~~~~~--~PcTp~av~~lL~~~ 151 (286)
T PRK14184 113 DP---AKDVDGFHPENMGRLALGLPGF--RPCTPAGVMTLLERY 151 (286)
T ss_pred Cc---ccCcccCCHhhHHHHhCCCCCC--CCCCHHHHHHHHHHh
Confidence 32 2232111 011112233333 488988877777653
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.14 E-value=2.5e+02 Score=32.64 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=33.7
Q ss_pred CCcEEEEEecChh---hHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDS---TRHVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~---~r~~L~~lLe~~G~eV~~A~---dg----~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+||+-|.. ..+.|..+.+..|..+..+. +. .++++.+.. ..+|+||+|.
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDT 190 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDT 190 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeC
Confidence 4578999998843 23344445555666666443 23 244555544 6799999998
No 381
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.09 E-value=7.9e+02 Score=27.11 Aligned_cols=104 Identities=16% Similarity=0.255 Sum_probs=61.8
Q ss_pred CcEEEEEecChhhHHHHHHHHH---hCCCEEEEE-----CCHHHHHHHHHhcC--CCceEEEEcc-CC-CCCHHHHHHHH
Q 004184 87 SLKVLLVENDDSTRHVVAALLR---NCGYEVTEA-----TNGLQAWKILEDLT--NHIDLVLTEV-MP-CLSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A-----~dg~EALe~L~~~~--~~pDLVLlDi-MP-gmdGleLlr~I 154 (770)
.+-|++|.|++.....++...+ +.|+++... .+-++.++.+.+.. ..+|=||+-+ +| ..+-..+++.|
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I 113 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERI 113 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcC
Confidence 4678889999988777766554 558776533 23456666666432 3456688888 87 56766666666
Q ss_pred HhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 155 R~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.- .+++==+ -+-.+-.|-.. ..|.++..+.++|++.
T Consensus 114 ~p---~KDVDGl~~~n~g~l~~~~~~--~~PcTp~av~~lL~~~ 152 (284)
T PRK14190 114 SP---EKDVDGFHPINVGRMMLGQDT--FLPCTPHGILELLKEY 152 (284)
T ss_pred Cc---cccccccCHhhHHHHhcCCCC--CCCCCHHHHHHHHHHc
Confidence 32 2232211 11112233333 3588888877777654
No 382
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=21.04 E-value=2.1e+02 Score=31.11 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=39.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCCcEE
Q 004184 114 VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAVDFL 179 (770)
Q Consensus 114 V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAddyL 179 (770)
.+.+.+.+||.+.++ ...|.|.+|- .|. +--++++.++.. .+++|+++. ...+.|++.+.
T Consensus 187 gVev~t~eea~~A~~---~gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsGGI~~~ni~~~~~~Gvd~I~ 256 (272)
T cd01573 187 VVEVDSLEEALAAAE---AGADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAGGINIENAAAYAAAGADILV 256 (272)
T ss_pred EEEcCCHHHHHHHHH---cCCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEECCCCHHHHHHHHHcCCcEEE
Confidence 348899999998875 4689999998 553 112344445432 246787743 56777887764
No 383
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=21.00 E-value=6e+02 Score=26.88 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=54.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
.++++||.+-+. ...++..++..+. .|....-.++..+++.. .|++|+-...+.-|+.+++.+. ..+|
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~E~~~~~~lEAma-----~G~P 292 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLYEGLPLVLIEAQA-----SGLP 292 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccccCCCHHHHHHHH-----hCCC
Confidence 345666655443 2334444444432 23332223344444433 4666554311233566666663 3467
Q ss_pred hhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||+. ..+.. ...|+..+-++++|.++|..++..
T Consensus 293 vI~s~~~~~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 293 CILSDTITKEVDLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred EEEEcCCchhhhhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 7743 22333 446777777889999999998864
No 384
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=20.95 E-value=5.8e+02 Score=26.23 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C------CCCCHHHHHHHHHhhcCCCCcchhh-----
Q 004184 103 VAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M------PCLSGVALLSKIMSHKTRKNLPVII----- 167 (770)
Q Consensus 103 L~~lLe~~G-~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M------PgmdGleLlr~IR~~~~~~~IPIIv----- 167 (770)
+...+++.+ ..+. .+.+.+++..... ..+|+|.+.. + .....+++++.|++.. .+|||+
T Consensus 114 ~i~~~~~~g~~~iiv~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~ 187 (219)
T cd04729 114 LIKRIHEEYNCLLMADISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHhCCeEEEECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCC
Confidence 333334444 5544 6678888866654 4578775531 1 1123578888888653 588883
Q ss_pred -----hhhHhcCCCcEEeC
Q 004184 168 -----FKCLSKGAVDFLVK 181 (770)
Q Consensus 168 -----l~al~aGAddyL~K 181 (770)
.+++..|++.++.-
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 26688899888753
No 385
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=20.95 E-value=1.5e+02 Score=27.40 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=46.3
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCcchhh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~IPIIv 167 (770)
++|.=.|......|..+|...|+.|..+. +++. ..-||+|+|. .. ...+ --+|.
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~-~q~~--------~~~DvlItD~~~~~~~~~---------------~a~I~ 57 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYE-GQQP--------DADDVLITDYEPQVAWPG---------------RAVIR 57 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-S-S------------TT-EEEEESS-S----S---------------SEEEE
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEec-CCCC--------CCCcEEEECCCcccCCcc---------------eEEEE
Confidence 45666777888899999999999999877 3321 3469999998 32 1111 11222
Q ss_pred h------hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 168 F------KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 168 l------~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
+ ...+.-....|.-...+.||..+|.++
T Consensus 58 ~s~~hiG~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 58 FSRRHIGPPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp EESS-SSS--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred EchHhCCCccccCCCcEEeccCCHHHHHHHHHHh
Confidence 2 233444556677777888888877765
No 386
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.89 E-value=3.2e+02 Score=31.13 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC----CCHHHHHHHHHhhcCCCCcchhhh---
Q 004184 97 DSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGVALLSKIMSHKTRKNLPVIIF--- 168 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg----mdGleLlr~IR~~~~~~~IPIIvl--- 168 (770)
..--+.|...|...||+.+.. ...+|||++.. ..- ...+++++++++.. +.++||+.
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vvvgGc~ 74 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKIIVTGCY 74 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEEEECCc
Confidence 344567888888889886531 13479999986 332 23678888887653 55666643
Q ss_pred ------hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 169 ------KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 ------~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.++.....|++.-+-....|.++|...
T Consensus 75 a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 75 AQSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 334455578888888887777777643
No 387
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=20.85 E-value=1.8e+02 Score=29.65 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=34.4
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|+|||-..-+...|.+.|+..|+++..+.+..+ + ..+|+||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~----l----~~~d~lii 42 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKE----A----ELADKLIL 42 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHH----h----ccCCEEEE
Confidence 689999999999999999999999998886532 2 34788776
No 388
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=20.84 E-value=1.2e+02 Score=38.60 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEEEECCHHHHHHHHHh---cCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILED---LTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~~A~dg~EALe~L~~---~~~~pDLVLlDi 141 (770)
..++|||||....+-..|..+|+.. |..++++.+-+-.++.+.. ....||.||+--
T Consensus 80 ~~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSP 139 (918)
T PLN02889 80 EFVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISP 139 (918)
T ss_pred ccceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECC
Confidence 4479999999999999999999987 8887765543322332221 014688888865
No 389
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=20.74 E-value=8.8e+02 Score=25.16 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=37.3
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 134 pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.|++|+-...+.-|..+++.+. ..+|||+. ..+..|..+|+..+.+. ++...|..++..
T Consensus 279 ad~~l~~s~~e~~~~~~~Ea~~-----~g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~ 343 (374)
T cd03817 279 ADLFVFASTTETQGLVLLEAMA-----AGLPVVAVDAPGLPDLVADGENGFLFPPGDE-ALAEALLRLLQD 343 (374)
T ss_pred cCEEEecccccCcChHHHHHHH-----cCCcEEEeCCCChhhheecCceeEEeCCCCH-HHHHHHHHHHhC
Confidence 4555543322333555666653 35677743 44566778899998887 888888877753
No 390
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=20.65 E-value=4.7e+02 Score=28.12 Aligned_cols=103 Identities=9% Similarity=0.040 Sum_probs=59.3
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-------GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~d-------g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
++.+.+|||-=. ......|...|++.|.+++.+.. .......+.. -..||.||+= -.+|++.+-.+..
T Consensus 15 ~l~g~~IlvTRp-~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~-l~~~d~iift---S~NAV~~~~~~~~ 89 (266)
T PRK08811 15 ADAAWTLISLRP-SGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQ-ALAAPIVVFT---SPAAVRAAHRLLP 89 (266)
T ss_pred CCCCCEEEEeCC-HHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhh-cccCCEEEEE---CHHHHHHHHHHhc
Confidence 345677766544 45567888999999988774443 1222233322 1357765553 2456665433322
Q ss_pred hcCCCCcchhhh-----h-hHhcCCC-cEEeCCCCHHHHHHH
Q 004184 157 HKTRKNLPVIIF-----K-CLSKGAV-DFLVKPIRKNELKNL 191 (770)
Q Consensus 157 ~~~~~~IPIIvl-----~-al~aGAd-dyL~KP~~~eeL~~~ 191 (770)
......++++++ + +.+.|.. +|+..-++.+.|.+.
T Consensus 90 ~~~~~~~~~~AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l 131 (266)
T PRK08811 90 LQRPARAHWLSVGEGTARALQACGIDEVVRPTRMDSEGLLAL 131 (266)
T ss_pred ccCccCCeEEEECHHHHHHHHHcCCCceeCCCCCCcHHHHhC
Confidence 222345677655 2 3456764 566677888888876
No 391
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=20.43 E-value=2e+02 Score=30.92 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=37.6
Q ss_pred EEEEecChhhHH----------HHHHHHHhCCCEEEEEC--CHHHHHHHHHhc---CCCceEEEEcc
Q 004184 90 VLLVENDDSTRH----------VVAALLRNCGYEVTEAT--NGLQAWKILEDL---TNHIDLVLTEV 141 (770)
Q Consensus 90 VLIVDDd~~~r~----------~L~~lLe~~G~eV~~A~--dg~EALe~L~~~---~~~pDLVLlDi 141 (770)
|.|||.+..... -|...++.+||+|+.+. +.++.++.+.+. ..+|-+||.+.
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~T 240 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKT 240 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEec
Confidence 789998876554 36777888999999876 455555555432 33899999986
No 392
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.39 E-value=3.2e+02 Score=30.23 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
+...+...+...||.+..+... .++++.+.. ..+|-||+-- ....-.+++.+... .+|+|++....
T Consensus 76 i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~--~~vdGiIi~~--~~~~~~~~~~l~~~----~~P~V~i~~~~ 147 (333)
T COG1609 76 ILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQ--KRVDGLILLG--ERPNDSLLELLAAA----GIPVVVIDRSP 147 (333)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEec--CCCCHHHHHHHHhc----CCCEEEEeCCC
Confidence 4455666677889998865543 346677766 7788777753 11223344445432 57888663221
Q ss_pred cCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 173 KGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 173 aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+.....+..-+..-...++++++.+
T Consensus 148 ~~~~~~~V~~Dn~~~~~~a~~~L~~~ 173 (333)
T COG1609 148 PGLGVPSVGIDNFAGAYLATEHLIEL 173 (333)
T ss_pred ccCCCCEEEEChHHHHHHHHHHHHHC
Confidence 12222223344555666667777765
No 393
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=20.34 E-value=2.4e+02 Score=31.82 Aligned_cols=63 Identities=27% Similarity=0.286 Sum_probs=41.1
Q ss_pred cEEEEEecChhh-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004184 88 LKVLLVENDDST-----RHVVAALLRNCGYEVTEAT---------NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (770)
Q Consensus 88 lrVLIVDDd~~~-----r~~L~~lLe~~G~eV~~A~---------dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~ 153 (770)
.|+|||-|.... .+.+...|+..|+++..+. +..++++.++. ..+|+||- +-+.+-+++.+.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~--~~~D~IIa--iGGGS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKE--EKVDFILA--VGGGSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHH--cCCCEEEE--eCChHHHHHHHH
Confidence 589988776443 3567888888888776553 35567777777 78898774 234444555544
Q ss_pred H
Q 004184 154 I 154 (770)
Q Consensus 154 I 154 (770)
+
T Consensus 105 i 105 (382)
T cd08187 105 I 105 (382)
T ss_pred H
Confidence 4
No 394
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=20.33 E-value=3.7e+02 Score=27.18 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=45.5
Q ss_pred EEEEecChhhHHHHHHHHH----hCC--CEE-EEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004184 90 VLLVENDDSTRHVVAALLR----NCG--YEV-TEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe----~~G--~eV-~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~ 162 (770)
|||-|.+-...-.+...++ ... ..| +.+.+.+|+.+.++. .+|+|.+|-|.-.+--++++.|+... +.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~~~~~~v~~l~~~~--~~ 127 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPEDLKEAVEELRELN--PR 127 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHHHHHHHHHHHHHHT--TT
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHHHHHHHHHHHhhcC--Cc
Confidence 6666655554433333333 222 223 489999999999874 59999999842233344555555543 33
Q ss_pred cchh---------hhhhHhcCCCcE
Q 004184 163 LPVI---------IFKCLSKGAVDF 178 (770)
Q Consensus 163 IPII---------vl~al~aGAddy 178 (770)
+.|. +.+....|+|.|
T Consensus 128 v~ie~SGGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp SEEEEESSSSTTTHHHHHHTT-SEE
T ss_pred EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 3333 124456676554
No 395
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.30 E-value=3.6e+02 Score=29.35 Aligned_cols=76 Identities=12% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhc-CCCcEEe
Q 004184 102 VVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSK-GAVDFLV 180 (770)
Q Consensus 102 ~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~a-GAddyL~ 180 (770)
.+..+|++.|+++... + ..+|+||+ -|.||. +|+.+|.......+||+- +.. |-.+||.
T Consensus 21 ~l~~~l~~~g~~~~~~---------~----~~~D~vi~---lGGDGT-~L~a~~~~~~~~~~pilg---In~~G~lGFL~ 80 (264)
T PRK03501 21 PLKKIAEEYGFTVVDH---------P----KNANIIVS---IGGDGT-FLQAVRKTGFREDCLYAG---ISTKDQLGFYC 80 (264)
T ss_pred HHHHHHHHCCCEEEcC---------C----CCccEEEE---ECCcHH-HHHHHHHhcccCCCeEEe---EecCCCCeEcc
Confidence 3666777888877632 1 23677776 266773 556666543222567653 355 7888995
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 004184 181 KPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 181 KP~~~eeL~~~L~~vlrr 198 (770)
.++++++...|.+++..
T Consensus 81 -~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 81 -DFHIDDLDKMIQAITKE 97 (264)
T ss_pred -cCCHHHHHHHHHHHHcC
Confidence 58899999999988764
No 396
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.26 E-value=3.8e+02 Score=31.10 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=38.6
Q ss_pred CCcEEEEEecChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEcc
Q 004184 86 RSLKVLLVENDDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLT--NHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~--~~pDLVLlDi 141 (770)
.+.+|.+|+-|+.- .+.++.+-+..++.+..+.+..+..+.+.... ..+|+||+|.
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 35689988887642 44566666667877777778777665554321 3589999998
No 397
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=20.22 E-value=7.4e+02 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=22.3
Q ss_pred hhhhHhcCCCcEEeCCCC--HHHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIR--KNELKNLWQHVWR 197 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~--~eeL~~~L~~vlr 197 (770)
+++|+++|..=|+-||+. .++..+++..+-+
T Consensus 84 ~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~ 116 (342)
T COG0673 84 ALAALEAGKHVLCEKPLALTLEEAEELVELARK 116 (342)
T ss_pred HHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 358899999999999984 5666655544433
No 398
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.21 E-value=3.3e+02 Score=28.07 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=48.9
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEccCCCCCH-HHHHHHHHhhcCCCCcchhhhhhH-
Q 004184 100 RHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEVMPCLSG-VALLSKIMSHKTRKNLPVIIFKCL- 171 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDiMPgmdG-leLlr~IR~~~~~~~IPIIvl~al- 171 (770)
...+...++..||++..+.. . .+.++.+.. ..+|.||+-.. +.+. .++++++++ ..+|||++...
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~--~~~Dgiii~~~-~~~~~~~~i~~~~~----~~iPvV~~~~~~ 90 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLT--RGVNVLIINPV-DPEGLVPAVAAAKA----AGVPVVVVDSSI 90 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEecC-CccchHHHHHHHHH----CCCCEEEecCCC
Confidence 34456667788999886543 2 245566655 67898887431 1122 345666653 46888877432
Q ss_pred hc--CCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 SK--GAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ~a--GAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.. ....|+. .-.......+...++.+
T Consensus 91 ~~~~~~~~~v~-~d~~~~g~~~~~~l~~~ 118 (282)
T cd06318 91 NLEAGVVTQVQ-SSNAKNGNLVGEWVVGE 118 (282)
T ss_pred CCCcCeEEEEe-cCcHHHHHHHHHHHHHH
Confidence 11 1123332 22344444555555553
No 399
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=20.20 E-value=1.7e+02 Score=29.36 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEE
Q 004184 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFL 179 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL 179 (770)
...+.++.+++||.|.++..+.-|...+.+ .+|+.||-=.- -.+|.+.+.... ...+|++-+-...-| .+
T Consensus 75 Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik~--~~p~~iigVAC----~~dL~~g~~~~~-~~~ip~~gV~l~~~g---C~ 144 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGGTLARKIIKE--YRPKAIIGVAC----ERDLISGIQDLK-PLGIPVQGVLLDRPG---CI 144 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcChHHHHHHHHH--hCCCEEEEEec----hHHHHHHHHHHh-hcCCCeeEEEeCCCC---cC
Confidence 356778888999999999999999999998 78886665331 123444444332 123566532112222 34
Q ss_pred eCCCCHHHHHHHH
Q 004184 180 VKPIRKNELKNLW 192 (770)
Q Consensus 180 ~KP~~~eeL~~~L 192 (770)
.--++.++|.++|
T Consensus 145 ~T~Vd~~~v~~~i 157 (158)
T PF01976_consen 145 NTDVDWEKVEEAI 157 (158)
T ss_pred CCcccHHHHHHHh
Confidence 4456777777665
No 400
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=20.19 E-value=5.7e+02 Score=26.31 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.8
Q ss_pred Ccchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 162 NLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 162 ~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+|||+. ..+..+..+|+.++.+.++|..+|..++...
T Consensus 302 G~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 302 GLPVVATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred CCCEEEecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 4566633 3456677789999999999999999988643
No 401
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.12 E-value=3.1e+02 Score=27.85 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...++..||.+..+... .++++.+.. ..+|-||+.. .+. .+++..+.. ..+|+|++
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiii~~~~~~---~~~~~~~~~----~~ipvv~~ 84 (268)
T cd01575 18 LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLS--RRPAGLILTGLEHT---ERTRQLLRA----AGIPVVEI 84 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHH--cCCCEEEEeCCCCC---HHHHHHHHh----cCCCEEEE
Confidence 345666777889998765432 355666655 6789777755 432 245555543 35788866
No 402
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.10 E-value=1e+03 Score=26.33 Aligned_cols=104 Identities=20% Similarity=0.338 Sum_probs=63.7
Q ss_pred CcEEEEEecChhhHHHHHHHHH---hCCCEEEEE-----CCHHHHHHHHHhcC--CCceEEEEcc-CC-CCCHHHHHHHH
Q 004184 87 SLKVLLVENDDSTRHVVAALLR---NCGYEVTEA-----TNGLQAWKILEDLT--NHIDLVLTEV-MP-CLSGVALLSKI 154 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe---~~G~eV~~A-----~dg~EALe~L~~~~--~~pDLVLlDi-MP-gmdGleLlr~I 154 (770)
.+-|++|.|++.....++...+ +.|+.+... .+-++.++.+.+.. ..+|=||+-+ +| ..+-..+++.|
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I 114 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERI 114 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence 5678999999988877766655 568875532 25566777776532 3567899988 87 57776777666
Q ss_pred HhhcCCCCcchh---hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 155 MSHKTRKNLPVI---IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 155 R~~~~~~~IPII---vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.- .+++==+ =+-.+..|-.. ..|.++..+.++|++.
T Consensus 115 ~p---~KDVDGl~~~n~g~l~~~~~~--~~PcTp~av~~ll~~~ 153 (285)
T PRK10792 115 HP---DKDVDGFHPYNVGRLAQRIPL--LRPCTPRGIMTLLERY 153 (285)
T ss_pred Cc---ccccCccChhhHhHHhCCCCC--CCCCCHHHHHHHHHHc
Confidence 42 2232222 01112233222 3488888887777654
No 403
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=20.08 E-value=1.9e+02 Score=32.69 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=34.3
Q ss_pred CCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCCcchh---------hhhhHhcCCCcEEeC
Q 004184 132 NHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKNLPVI---------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 132 ~~pDLVLlDi-MPg-mdGleLlr~IR~~~~~~~IPII---------vl~al~aGAddyL~K 181 (770)
..+|+|++|+ --. ..-++.+++||+.. +.++|| +..++++|||.+.+=
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~--p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAF--PEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhC--CCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3589999999 533 33468899998753 566666 236788999987544
No 404
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.03 E-value=6.3e+02 Score=25.83 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCEEEEEC-----CHHH---HHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 101 HVVAALLRNCGYEVTEAT-----NGLQ---AWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~-----dg~E---ALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
..+...++..||.+.... +..+ +++.+.. ..+|-||+-........+.++.++. ..+|+|++....
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgvii~~~~~~~~~~~l~~~~~----~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIA--RGPDAILLAPTDAKALVPPLKEAKD----AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHH--hCCCEEEEcCCChhhhHHHHHHHHH----CCCCEEEecCCC
Confidence 445566778899988653 3333 3444444 5788888732211111346666653 458888774322
Q ss_pred cC-C-CcEEeCCCCHHHHHHHHHHHHHH
Q 004184 173 KG-A-VDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 173 aG-A-ddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+ . ..|+ ..-....-..+...++++
T Consensus 93 ~~~~~~~~v-~~d~~~~~~~~~~~l~~~ 119 (273)
T cd06310 93 NSDIAVSFV-ATDNVAAGKLAAEALAEL 119 (273)
T ss_pred CCCcceEEE-eeChHHHHHHHHHHHHHH
Confidence 22 1 2333 333333344555566554
No 405
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.02 E-value=2.2e+02 Score=28.60 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=40.1
Q ss_pred HHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcC--CCCcchhhh--
Q 004184 104 AALLRNCGYEVT-EAT--NGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKT--RKNLPVIIF-- 168 (770)
Q Consensus 104 ~~lLe~~G~eV~-~A~--dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-------leLlr~IR~~~~--~~~IPIIvl-- 168 (770)
.+.++..+..+. .+. +..+.++.+.. .+|.|+++. .|+.+| ++.++++++... .+.+||++.
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG 174 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLD---EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG 174 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHh---hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 344445566544 332 23444444433 268888887 676544 344555554321 124677532
Q ss_pred -------hhHhcCCCcEEe
Q 004184 169 -------KCLSKGAVDFLV 180 (770)
Q Consensus 169 -------~al~aGAddyL~ 180 (770)
.+++.|++.++.
T Consensus 175 I~~env~~~~~~gad~iiv 193 (211)
T cd00429 175 INLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 667788888754
No 406
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=20.01 E-value=4.1e+02 Score=29.52 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCcEEEEEecChhhH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDDSTR---HVVAALLRNCGYEVTEAT---NG----LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r---~~L~~lLe~~G~eV~~A~---dg----~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+|++-|..-. +.+..+.+..+..++... +. .+++..... ..+|+||+|.
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDT 204 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDT 204 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 456899998876322 334445555666665443 22 244444344 6799999998
Done!