Query 004184
Match_columns 770
No_of_seqs 724 out of 2513
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 16:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 5.7E-23 2E-27 195.0 11.4 111 86-198 11-133 (134)
2 3mm4_A Histidine kinase homolo 99.9 1.1E-21 3.9E-26 195.7 11.5 157 34-200 16-198 (206)
3 2lpm_A Two-component response 99.8 3E-21 1E-25 180.9 3.9 107 85-197 6-121 (123)
4 3t6k_A Response regulator rece 99.8 4.5E-19 1.5E-23 163.8 13.5 115 85-201 2-127 (136)
5 3gl9_A Response regulator; bet 99.8 4.8E-19 1.6E-23 160.6 13.1 108 88-197 3-121 (122)
6 3h1g_A Chemotaxis protein CHEY 99.8 3.4E-18 1.2E-22 155.9 12.3 112 86-198 4-127 (129)
7 3f6p_A Transcriptional regulat 99.8 4.2E-18 1.5E-22 153.6 12.2 106 88-198 3-119 (120)
8 3i42_A Response regulator rece 99.7 5.3E-18 1.8E-22 153.3 12.1 113 86-200 2-124 (127)
9 3r0j_A Possible two component 99.7 7.7E-18 2.6E-22 171.8 14.1 111 86-200 22-143 (250)
10 3grc_A Sensor protein, kinase; 99.7 9.3E-18 3.2E-22 154.2 13.3 116 86-203 5-132 (140)
11 3kht_A Response regulator; PSI 99.7 9.8E-18 3.3E-22 155.1 13.5 118 85-204 3-134 (144)
12 3gt7_A Sensor protein; structu 99.7 1.3E-17 4.3E-22 157.2 14.4 114 86-201 6-130 (154)
13 3hzh_A Chemotaxis response reg 99.7 5.6E-18 1.9E-22 160.1 11.4 109 85-197 34-156 (157)
14 3n0r_A Response regulator; sig 99.7 3.5E-18 1.2E-22 180.4 11.0 110 87-201 160-280 (286)
15 3rqi_A Response regulator prot 99.7 3.4E-18 1.2E-22 166.6 10.0 112 85-200 5-127 (184)
16 3crn_A Response regulator rece 99.7 1.9E-17 6.3E-22 151.6 14.3 110 87-200 3-123 (132)
17 3m6m_D Sensory/regulatory prot 99.7 1.2E-17 4.2E-22 155.7 12.9 112 85-198 12-136 (143)
18 2pl1_A Transcriptional regulat 99.7 3.6E-17 1.2E-21 145.9 14.6 108 88-199 1-119 (121)
19 3c3m_A Response regulator rece 99.7 1.5E-17 5.3E-22 153.2 12.4 111 87-199 3-124 (138)
20 3cg4_A Response regulator rece 99.7 2.5E-17 8.6E-22 151.3 13.7 117 85-203 5-132 (142)
21 1dbw_A Transcriptional regulat 99.7 2.9E-17 9.8E-22 148.6 13.7 109 86-198 2-121 (126)
22 3luf_A Two-component system re 99.7 2.6E-17 8.8E-22 170.6 15.1 116 86-203 123-250 (259)
23 3heb_A Response regulator rece 99.7 4.3E-17 1.5E-21 152.4 15.1 117 87-203 4-140 (152)
24 2r25_B Osmosensing histidine p 99.7 2E-17 7E-22 152.1 12.6 112 87-199 2-128 (133)
25 3nhm_A Response regulator; pro 99.7 3E-17 1E-21 149.1 13.4 114 87-203 4-127 (133)
26 1jbe_A Chemotaxis protein CHEY 99.7 3.7E-17 1.3E-21 147.6 13.8 112 86-199 3-126 (128)
27 1xhf_A DYE resistance, aerobic 99.7 5.1E-17 1.7E-21 145.7 14.4 108 87-199 3-121 (123)
28 3jte_A Response regulator rece 99.7 4.7E-17 1.6E-21 150.0 14.5 115 86-202 2-127 (143)
29 1mb3_A Cell division response 99.7 2.5E-17 8.7E-22 147.6 12.1 109 88-198 2-121 (124)
30 3h5i_A Response regulator/sens 99.7 3.9E-17 1.3E-21 150.9 13.6 114 85-202 3-128 (140)
31 1p6q_A CHEY2; chemotaxis, sign 99.7 2.1E-17 7.3E-22 149.4 11.3 110 87-198 6-127 (129)
32 1srr_A SPO0F, sporulation resp 99.7 2.8E-17 9.7E-22 147.9 11.5 107 87-197 3-120 (124)
33 3hv2_A Response regulator/HD d 99.7 6.1E-17 2.1E-21 151.8 14.1 111 86-200 13-135 (153)
34 1zgz_A Torcad operon transcrip 99.7 8.9E-17 3.1E-21 143.9 14.4 107 88-199 3-120 (122)
35 3b2n_A Uncharacterized protein 99.7 3.8E-17 1.3E-21 149.7 11.8 111 87-201 3-126 (133)
36 3kto_A Response regulator rece 99.7 1.6E-17 5.3E-22 152.8 9.1 114 86-203 5-131 (136)
37 2qzj_A Two-component response 99.7 6.2E-17 2.1E-21 149.4 13.1 111 87-202 4-125 (136)
38 2zay_A Response regulator rece 99.7 4.6E-17 1.6E-21 150.8 12.3 116 85-202 6-132 (147)
39 3n53_A Response regulator rece 99.7 3.6E-17 1.2E-21 150.5 11.4 113 86-201 2-125 (140)
40 4e7p_A Response regulator; DNA 99.7 5.3E-17 1.8E-21 151.8 12.5 112 84-199 17-141 (150)
41 1i3c_A Response regulator RCP1 99.7 1E-16 3.5E-21 149.9 14.4 115 86-200 7-139 (149)
42 3eod_A Protein HNR; response r 99.7 4.3E-17 1.5E-21 147.9 11.4 111 85-199 5-127 (130)
43 3cnb_A DNA-binding response re 99.7 8.9E-17 3.1E-21 147.2 13.7 115 86-202 7-134 (143)
44 3hdg_A Uncharacterized protein 99.7 4.7E-17 1.6E-21 148.9 11.8 113 86-202 6-129 (137)
45 2a9o_A Response regulator; ess 99.7 8.4E-17 2.9E-21 143.0 12.9 106 88-198 2-118 (120)
46 3hdv_A Response regulator; PSI 99.7 9.7E-17 3.3E-21 146.7 13.3 112 86-200 6-129 (136)
47 3lte_A Response regulator; str 99.7 1.1E-16 3.9E-21 145.2 13.6 112 86-199 5-126 (132)
48 2jba_A Phosphate regulon trans 99.7 2.5E-17 8.7E-22 148.2 9.0 110 88-199 3-123 (127)
49 3cfy_A Putative LUXO repressor 99.7 6.1E-17 2.1E-21 149.6 11.6 109 88-200 5-124 (137)
50 3lua_A Response regulator rece 99.7 2E-17 6.9E-22 152.3 8.3 116 87-203 4-132 (140)
51 1tmy_A CHEY protein, TMY; chem 99.7 7.4E-17 2.5E-21 144.0 11.7 105 88-196 3-119 (120)
52 3f6c_A Positive transcription 99.7 4.4E-17 1.5E-21 148.3 10.2 111 88-202 2-124 (134)
53 1mvo_A PHOP response regulator 99.7 1.6E-16 5.4E-21 144.9 13.4 110 87-200 3-123 (136)
54 1k68_A Phytochrome response re 99.7 2.2E-16 7.6E-21 143.4 14.3 116 87-202 2-135 (140)
55 3a10_A Response regulator; pho 99.7 1.3E-16 4.4E-21 141.6 12.3 105 88-196 2-115 (116)
56 2ayx_A Sensor kinase protein R 99.7 1.4E-16 4.7E-21 164.3 14.3 112 85-200 127-249 (254)
57 1k66_A Phytochrome response re 99.7 2.6E-16 8.9E-21 144.8 14.0 118 85-202 4-142 (149)
58 2qr3_A Two-component system re 99.7 1.6E-16 5.4E-21 145.4 12.4 112 86-201 2-129 (140)
59 1zh2_A KDP operon transcriptio 99.7 1.9E-16 6.4E-21 141.0 12.2 107 88-199 2-119 (121)
60 3snk_A Response regulator CHEY 99.7 1.6E-17 5.3E-22 152.4 4.9 109 86-198 13-133 (135)
61 3cg0_A Response regulator rece 99.7 2.4E-16 8.2E-21 144.1 12.6 113 86-203 8-133 (140)
62 3ilh_A Two component response 99.7 1.8E-16 6.3E-21 145.6 11.9 114 86-199 8-140 (146)
63 2rjn_A Response regulator rece 99.7 4.3E-16 1.5E-20 145.9 14.4 112 85-200 5-128 (154)
64 4dad_A Putative pilus assembly 99.7 6.6E-17 2.3E-21 149.8 8.2 112 86-200 19-143 (146)
65 1yio_A Response regulatory pro 99.7 2.6E-16 8.8E-21 154.9 12.6 109 87-199 4-123 (208)
66 1dz3_A Stage 0 sporulation pro 99.7 1.8E-16 6.1E-21 144.1 10.7 109 88-199 3-124 (130)
67 2gkg_A Response regulator homo 99.7 1.9E-16 6.5E-21 141.5 10.7 110 86-197 4-124 (127)
68 1dcf_A ETR1 protein; beta-alph 99.7 2.7E-16 9.1E-21 144.0 11.5 111 85-198 5-129 (136)
69 3kcn_A Adenylate cyclase homol 99.7 5.6E-16 1.9E-20 144.9 13.7 111 86-201 3-126 (151)
70 3cu5_A Two component transcrip 99.7 3.6E-16 1.2E-20 145.1 11.4 109 88-200 3-125 (141)
71 1kgs_A DRRD, DNA binding respo 99.7 7.1E-16 2.4E-20 153.3 14.2 110 87-200 2-122 (225)
72 1ys7_A Transcriptional regulat 99.7 6.9E-16 2.4E-20 154.2 14.1 111 86-200 6-127 (233)
73 3q9s_A DNA-binding response re 99.6 2.9E-16 9.9E-21 161.2 10.9 110 85-199 35-155 (249)
74 3eul_A Possible nitrate/nitrit 99.6 6.9E-16 2.4E-20 144.2 12.5 113 86-202 14-139 (152)
75 3c97_A Signal transduction his 99.6 6.7E-16 2.3E-20 142.3 12.1 112 87-200 10-132 (140)
76 3cz5_A Two-component response 99.6 4.6E-16 1.6E-20 145.6 11.1 112 85-200 3-127 (153)
77 2qv0_A Protein MRKE; structura 99.6 1.2E-15 4.1E-20 140.5 13.6 114 86-203 8-132 (143)
78 1qkk_A DCTD, C4-dicarboxylate 99.6 8.2E-16 2.8E-20 144.1 12.6 110 87-200 3-123 (155)
79 3dzd_A Transcriptional regulat 99.6 4E-16 1.4E-20 170.6 12.1 109 89-201 2-121 (368)
80 2qxy_A Response regulator; reg 99.6 7.2E-16 2.5E-20 141.9 11.6 111 87-201 4-124 (142)
81 3eq2_A Probable two-component 99.6 4.7E-16 1.6E-20 169.5 12.1 110 86-199 4-125 (394)
82 1s8n_A Putative antiterminator 99.6 9.8E-16 3.3E-20 150.9 13.0 109 87-200 13-133 (205)
83 1a04_A Nitrate/nitrite respons 99.6 8E-16 2.7E-20 152.4 12.4 110 86-199 4-126 (215)
84 2rdm_A Response regulator rece 99.6 2E-15 6.7E-20 136.7 13.3 111 85-201 3-126 (132)
85 1w25_A Stalked-cell differenti 99.6 1.1E-15 3.8E-20 169.2 13.6 110 88-199 2-122 (459)
86 2jk1_A HUPR, hydrogenase trans 99.6 2.2E-15 7.5E-20 138.7 13.2 108 88-200 2-121 (139)
87 1dc7_A NTRC, nitrogen regulati 99.6 1.1E-16 3.7E-21 142.9 3.0 110 86-199 2-122 (124)
88 2qsj_A DNA-binding response re 99.6 2.1E-15 7.1E-20 140.9 11.5 113 86-201 2-127 (154)
89 3kyj_B CHEY6 protein, putative 99.6 2.4E-15 8.3E-20 139.4 11.8 101 86-191 12-128 (145)
90 3eqz_A Response regulator; str 99.6 5.8E-16 2E-20 140.4 7.1 109 86-199 2-126 (135)
91 2qvg_A Two component response 99.6 2.8E-15 9.7E-20 137.8 11.7 111 86-196 6-133 (143)
92 2oqr_A Sensory transduction pr 99.6 2.4E-15 8.1E-20 150.3 11.6 108 87-199 4-122 (230)
93 2j48_A Two-component sensor ki 99.6 2.4E-15 8.3E-20 131.8 10.3 107 88-196 2-116 (119)
94 2gwr_A DNA-binding response re 99.6 1.9E-15 6.5E-20 152.7 10.5 107 87-198 5-122 (238)
95 2pln_A HP1043, response regula 99.6 5.5E-15 1.9E-19 135.4 12.6 107 85-199 16-134 (137)
96 1ny5_A Transcriptional regulat 99.6 3.3E-15 1.1E-19 164.2 12.9 108 88-199 1-119 (387)
97 3t8y_A CHEB, chemotaxis respon 99.6 5.7E-15 2E-19 140.9 11.5 109 85-198 23-155 (164)
98 3c3w_A Two component transcrip 99.6 1.7E-15 5.8E-20 152.3 7.9 110 88-201 2-124 (225)
99 3bre_A Probable two-component 99.6 3.1E-15 1.1E-19 159.7 10.1 110 87-198 18-139 (358)
100 3sy8_A ROCR; TIM barrel phosph 99.6 5.8E-15 2E-19 162.1 11.5 112 86-200 2-130 (400)
101 3klo_A Transcriptional regulat 99.6 2.6E-15 9E-20 150.5 6.6 111 86-199 6-130 (225)
102 1p2f_A Response regulator; DRR 99.5 1.3E-14 4.5E-19 144.1 11.0 106 87-199 2-118 (220)
103 1qo0_D AMIR; binding protein, 99.5 9.3E-15 3.2E-19 142.9 6.3 107 85-200 10-127 (196)
104 2b4a_A BH3024; flavodoxin-like 99.5 3E-14 1E-18 130.6 9.0 112 84-198 12-131 (138)
105 2hqr_A Putative transcriptiona 99.5 6.4E-14 2.2E-18 139.5 9.9 104 88-198 1-115 (223)
106 1a2o_A CHEB methylesterase; ba 99.5 1.8E-13 6.2E-18 148.8 12.5 108 86-198 2-133 (349)
107 2vyc_A Biodegradative arginine 99.4 2.8E-13 9.7E-18 160.9 11.0 109 88-200 1-135 (755)
108 3luf_A Two-component system re 99.3 6.7E-13 2.3E-17 137.4 6.3 91 88-185 5-107 (259)
109 1w25_A Stalked-cell differenti 98.7 8.8E-08 3E-12 105.9 13.2 110 86-199 151-271 (459)
110 3cwo_X Beta/alpha-barrel prote 98.7 4E-09 1.4E-13 104.9 1.1 84 112-197 6-100 (237)
111 2ayx_A Sensor kinase protein R 96.9 0.00069 2.3E-08 69.3 5.2 95 85-196 9-104 (254)
112 3n75_A LDC, lysine decarboxyla 96.2 0.0081 2.8E-07 71.2 8.7 95 100-200 19-125 (715)
113 3q7r_A Transcriptional regulat 96.0 0.013 4.5E-07 52.8 7.0 95 88-199 13-119 (121)
114 2yxb_A Coenzyme B12-dependent 95.6 0.092 3.1E-06 50.7 11.6 110 87-199 18-146 (161)
115 1mu5_A Type II DNA topoisomera 93.1 0.024 8.3E-07 64.0 1.3 165 24-195 110-301 (471)
116 3ogl_Q JAZ1 incomplete degron 92.8 0.051 1.8E-06 35.4 1.9 19 712-730 3-21 (21)
117 1ccw_A Protein (glutamate muta 92.7 0.55 1.9E-05 43.9 9.8 100 94-196 14-134 (137)
118 3kp1_A D-ornithine aminomutase 90.8 0.66 2.3E-05 53.9 9.5 112 86-199 601-736 (763)
119 3ogk_Q JAZ1 incomplete degron 89.4 0.091 3.1E-06 34.7 0.6 19 715-733 1-19 (22)
120 1xrs_B D-lysine 5,6-aminomutas 87.4 1.3 4.4E-05 46.3 8.0 110 87-198 120-258 (262)
121 1y80_A Predicted cobalamin bin 86.7 0.84 2.9E-05 45.3 6.0 92 87-180 88-196 (210)
122 3ezx_A MMCP 1, monomethylamine 86.5 0.53 1.8E-05 47.5 4.5 92 87-180 92-202 (215)
123 3cwo_X Beta/alpha-barrel prote 84.4 0.76 2.6E-05 44.8 4.3 72 118-193 130-221 (237)
124 2i2x_B MTAC, methyltransferase 84.3 4.4 0.00015 41.7 10.3 103 87-196 123-242 (258)
125 3jz3_A Sensor protein QSEC; he 83.9 0.64 2.2E-05 44.7 3.5 35 25-65 182-216 (222)
126 2xij_A Methylmalonyl-COA mutas 83.1 5.6 0.00019 47.4 11.6 112 86-200 603-733 (762)
127 1req_A Methylmalonyl-COA mutas 80.5 5.4 0.00019 47.2 10.2 110 86-198 595-723 (727)
128 1b3q_A Protein (chemotaxis pro 79.9 0.2 6.8E-06 54.5 -2.0 82 24-109 212-309 (379)
129 1wv2_A Thiazole moeity, thiazo 78.5 8 0.00027 40.4 9.5 87 104-197 128-237 (265)
130 2zbk_B Type 2 DNA topoisomeras 77.3 0.89 3E-05 52.0 2.3 167 25-198 110-303 (530)
131 2c2a_A Sensor histidine kinase 74.4 0.75 2.6E-05 45.9 0.6 37 23-65 211-247 (258)
132 3rht_A (gatase1)-like protein; 73.4 2 6.8E-05 44.7 3.5 51 87-141 4-58 (259)
133 3fkq_A NTRC-like two-domain pr 73.0 5.4 0.00018 42.9 6.9 99 86-196 20-126 (373)
134 2bfw_A GLGA glycogen synthase; 71.1 25 0.00086 32.8 10.5 100 87-197 70-179 (200)
135 3q58_A N-acetylmannosamine-6-p 68.8 13 0.00045 37.6 8.3 78 97-181 115-210 (229)
136 3d36_A Sporulation kinase B; G 68.0 2.7 9.1E-05 40.9 2.8 38 23-66 188-225 (244)
137 4ew8_A Sensor protein DIVL; si 67.9 2.2 7.5E-05 42.5 2.3 37 24-66 220-256 (268)
138 1gkz_A [3-methyl-2-oxobutanoat 67.6 1.4 4.9E-05 47.4 0.9 39 22-66 335-373 (388)
139 1r8j_A KAIA; circadian clock p 67.6 32 0.0011 36.0 10.8 113 86-201 8-132 (289)
140 2l69_A Rossmann 2X3 fold prote 66.9 50 0.0017 29.3 10.4 108 88-199 3-124 (134)
141 2btz_A Pyruvate dehydrogenase 65.7 3.6 0.00012 44.4 3.6 37 24-66 314-350 (394)
142 3igs_A N-acetylmannosamine-6-p 63.6 19 0.00065 36.4 8.3 77 97-180 115-209 (232)
143 2gek_A Phosphatidylinositol ma 62.2 20 0.00068 37.3 8.4 59 134-197 283-348 (406)
144 3c48_A Predicted glycosyltrans 62.1 30 0.001 36.6 10.0 102 87-197 276-390 (438)
145 3l4e_A Uncharacterized peptida 61.7 34 0.0012 34.0 9.6 66 86-158 26-101 (206)
146 1y8o_A [pyruvate dehydrogenase 61.7 3.8 0.00013 44.8 2.8 36 24-63 338-373 (419)
147 2q8g_A [pyruvate dehydrogenase 61.3 4 0.00014 44.2 3.0 36 24-63 327-362 (407)
148 2oo3_A Protein involved in cat 60.3 7.7 0.00026 40.9 4.8 69 88-156 114-184 (283)
149 1i58_A Chemotaxis protein CHEA 60.0 4.2 0.00014 38.5 2.5 38 22-65 151-188 (189)
150 2q5c_A NTRC family transcripti 59.2 63 0.0021 31.7 11.0 85 88-195 5-90 (196)
151 2iw1_A Lipopolysaccharide core 58.9 25 0.00084 36.1 8.4 100 87-197 228-336 (374)
152 2e0a_A Pyruvate dehydrogenase 58.6 3.8 0.00013 44.2 2.2 36 24-65 314-349 (394)
153 2lci_A Protein OR36; structura 58.2 22 0.00074 31.6 6.5 40 90-129 80-119 (134)
154 2r60_A Glycosyl transferase, g 57.7 37 0.0013 36.9 10.0 89 100-197 321-423 (499)
155 2f9f_A First mannosyl transfer 56.9 40 0.0014 31.3 8.8 102 86-198 49-162 (177)
156 2htm_A Thiazole biosynthesis p 56.6 12 0.0004 39.3 5.3 87 105-197 118-228 (268)
157 1rzu_A Glycogen synthase 1; gl 55.1 51 0.0017 35.5 10.4 102 87-197 320-439 (485)
158 3ffs_A Inosine-5-monophosphate 54.7 56 0.0019 35.9 10.7 91 87-180 156-274 (400)
159 1xi3_A Thiamine phosphate pyro 54.1 74 0.0025 30.6 10.5 70 102-179 101-188 (215)
160 1z0s_A Probable inorganic poly 54.1 5.4 0.00018 41.9 2.3 94 87-197 29-122 (278)
161 1bxd_A ENVZ(290-450), protein 53.1 6.4 0.00022 36.1 2.4 37 24-66 114-150 (161)
162 3fro_A GLGA glycogen synthase; 52.4 71 0.0024 33.2 10.8 100 87-197 285-394 (439)
163 2jjm_A Glycosyl transferase, g 51.9 23 0.00078 37.0 6.8 59 134-197 285-349 (394)
164 1yad_A Regulatory protein TENI 51.6 64 0.0022 31.6 9.7 91 100-198 101-214 (221)
165 3o63_A Probable thiamine-phosp 51.5 67 0.0023 32.7 10.0 77 116-196 141-239 (243)
166 1qdl_B Protein (anthranilate s 51.1 9.9 0.00034 36.9 3.6 48 90-139 4-51 (195)
167 2qzs_A Glycogen synthase; glyc 50.7 58 0.002 35.0 10.0 102 87-197 321-440 (485)
168 3okp_A GDP-mannose-dependent a 48.5 54 0.0019 33.7 9.0 67 121-197 264-343 (394)
169 1id0_A PHOQ histidine kinase; 48.4 9 0.00031 34.4 2.6 37 24-66 109-145 (152)
170 4dzz_A Plasmid partitioning pr 48.3 25 0.00084 33.3 5.9 57 86-145 29-87 (206)
171 1h1y_A D-ribulose-5-phosphate 48.1 47 0.0016 33.0 8.1 91 103-197 105-222 (228)
172 1ysr_A Sensor-type histidine k 47.9 9.6 0.00033 34.3 2.7 35 25-65 114-148 (150)
173 4e5v_A Putative THUA-like prot 46.8 9.9 0.00034 39.8 2.9 59 86-147 3-73 (281)
174 3qhp_A Type 1 capsular polysac 46.5 1.1E+02 0.0037 27.5 9.8 98 87-197 32-139 (166)
175 2px2_A Genome polyprotein [con 46.2 22 0.00075 37.2 5.3 63 132-199 138-202 (269)
176 1sui_A Caffeoyl-COA O-methyltr 46.0 1E+02 0.0035 30.7 10.3 67 88-156 105-178 (247)
177 3i6v_A Periplasmic His/Glu/Gln 45.6 2E+02 0.0067 27.3 12.0 102 83-201 103-204 (232)
178 4fo4_A Inosine 5'-monophosphat 45.2 96 0.0033 33.6 10.5 91 87-180 120-239 (366)
179 3pfn_A NAD kinase; structural 44.4 21 0.00072 38.9 5.1 102 88-198 39-164 (365)
180 2iuy_A Avigt4, glycosyltransfe 44.3 43 0.0015 34.1 7.3 54 86-141 2-92 (342)
181 4eyg_A Twin-arginine transloca 43.8 56 0.0019 33.5 8.2 76 88-166 140-227 (368)
182 3gjy_A Spermidine synthase; AP 43.7 33 0.0011 36.5 6.5 68 87-156 113-188 (317)
183 3dr5_A Putative O-methyltransf 43.1 28 0.00094 34.4 5.5 64 88-155 82-150 (221)
184 2yjp_A Putative ABC transporte 43.0 5.1 0.00017 40.5 0.0 14 599-612 3-16 (291)
185 2ekc_A AQ_1548, tryptophan syn 42.4 45 0.0015 34.1 7.1 62 132-195 43-143 (262)
186 3bul_A Methionine synthase; tr 42.2 27 0.00092 40.3 5.8 77 87-167 98-184 (579)
187 3c3y_A Pfomt, O-methyltransfer 42.1 59 0.002 32.1 7.8 66 88-155 96-168 (237)
188 3p9n_A Possible methyltransfer 41.7 52 0.0018 30.9 7.0 67 88-156 68-139 (189)
189 2qfm_A Spermine synthase; sper 41.4 60 0.0021 35.3 8.1 56 88-143 212-279 (364)
190 3f4w_A Putative hexulose 6 pho 41.4 67 0.0023 31.0 7.9 105 89-197 79-208 (211)
191 4g68_A ABC transporter; transp 40.5 5.9 0.0002 43.1 0.0 12 716-727 81-92 (456)
192 3zxq_A Hypoxia sensor histidin 40.4 14 0.00048 32.1 2.5 35 25-65 88-122 (124)
193 3vnd_A TSA, tryptophan synthas 39.8 33 0.0011 35.6 5.6 68 124-195 38-144 (267)
194 2fhp_A Methylase, putative; al 39.8 1.3E+02 0.0045 27.5 9.4 67 88-154 68-138 (187)
195 2d00_A V-type ATP synthase sub 39.7 69 0.0024 28.7 7.0 73 86-167 2-77 (109)
196 1wl8_A GMP synthase [glutamine 39.3 34 0.0011 32.8 5.2 73 89-166 2-76 (189)
197 3nkl_A UDP-D-quinovosamine 4-d 38.4 92 0.0031 27.8 7.8 98 87-191 4-125 (141)
198 3fwz_A Inner membrane protein 38.1 55 0.0019 29.5 6.3 86 86-180 29-124 (140)
199 2fpo_A Methylase YHHF; structu 37.8 65 0.0022 30.9 7.1 65 89-156 79-146 (202)
200 2iuy_A Avigt4, glycosyltransfe 37.8 29 0.00099 35.5 4.8 47 145-197 253-307 (342)
201 1i1q_B Anthranilate synthase c 37.7 56 0.0019 31.4 6.6 52 88-140 1-55 (192)
202 3kts_A Glycerol uptake operon 37.5 43 0.0015 33.3 5.7 71 102-180 92-178 (192)
203 3jy6_A Transcriptional regulat 37.1 83 0.0028 31.0 7.9 59 100-168 26-91 (276)
204 2pyy_A Ionotropic glutamate re 37.0 82 0.0028 29.2 7.5 52 83-141 108-159 (228)
205 2ift_A Putative methylase HI07 36.8 39 0.0013 32.4 5.3 66 89-156 78-149 (201)
206 3rot_A ABC sugar transporter, 36.7 1.4E+02 0.0046 29.8 9.6 62 100-168 22-92 (297)
207 2x6q_A Trehalose-synthase TRET 36.7 1.5E+02 0.005 31.0 10.2 44 147-197 329-378 (416)
208 2avd_A Catechol-O-methyltransf 36.4 83 0.0028 30.2 7.7 66 88-155 95-166 (229)
209 3iwt_A 178AA long hypothetical 36.0 65 0.0022 30.7 6.7 45 97-141 39-89 (178)
210 3duw_A OMT, O-methyltransferas 35.7 1.2E+02 0.0042 28.9 8.8 67 88-156 84-155 (223)
211 3tr6_A O-methyltransferase; ce 35.6 1.1E+02 0.0036 29.3 8.3 54 88-141 90-148 (225)
212 2i7c_A Spermidine synthase; tr 35.5 65 0.0022 33.0 7.0 54 88-144 103-163 (283)
213 3sl2_A Sensor histidine kinase 35.5 20 0.00068 33.3 2.8 37 24-66 116-152 (177)
214 2es4_D Lipase chaperone; prote 35.4 7.9 0.00027 41.7 0.0 19 709-727 98-116 (332)
215 3zxo_A Redox sensor histidine 35.4 18 0.00063 31.5 2.5 37 24-65 91-127 (129)
216 3s83_A Ggdef family protein; s 35.3 26 0.00088 35.1 3.8 91 102-194 143-254 (259)
217 3p9z_A Uroporphyrinogen III co 35.1 1.2E+02 0.0041 30.0 8.7 102 86-195 109-224 (229)
218 3qja_A IGPS, indole-3-glycerol 35.0 1.8E+02 0.0062 30.0 10.3 88 89-181 138-242 (272)
219 2xci_A KDO-transferase, 3-deox 35.0 45 0.0015 35.4 5.9 103 87-198 225-346 (374)
220 3c6k_A Spermine synthase; sper 34.9 55 0.0019 35.8 6.5 56 88-143 229-295 (381)
221 4gud_A Imidazole glycerol phos 34.7 48 0.0016 32.1 5.6 43 89-139 4-46 (211)
222 2an1_A Putative kinase; struct 34.6 46 0.0016 34.2 5.7 96 88-197 6-118 (292)
223 1ujp_A Tryptophan synthase alp 33.9 37 0.0013 35.2 4.8 67 123-195 35-140 (271)
224 3qk7_A Transcriptional regulat 33.8 97 0.0033 30.9 7.9 60 100-168 29-94 (294)
225 3kzg_A Arginine 3RD transport 33.7 1.6E+02 0.0056 27.7 9.2 105 83-201 106-217 (237)
226 3oy2_A Glycosyltransferase B73 33.3 98 0.0034 32.3 8.2 101 87-197 215-354 (413)
227 1mjf_A Spermidine synthase; sp 33.3 1.1E+02 0.0039 31.1 8.4 51 88-143 99-163 (281)
228 3rc1_A Sugar 3-ketoreductase; 33.0 2E+02 0.007 30.1 10.6 100 84-197 24-138 (350)
229 2v25_A Major cell-binding fact 32.9 1.2E+02 0.004 28.8 8.1 55 84-141 145-201 (259)
230 3ehg_A Sensor kinase (YOCF pro 32.9 22 0.00075 31.4 2.6 35 23-65 91-125 (128)
231 3ovp_A Ribulose-phosphate 3-ep 32.8 57 0.0019 32.8 5.9 92 101-197 102-218 (228)
232 3ehh_A Sensor kinase (YOCF pro 32.5 21 0.00072 34.0 2.6 23 25-47 183-205 (218)
233 3usb_A Inosine-5'-monophosphat 32.3 2.2E+02 0.0075 32.0 11.2 92 87-181 268-388 (511)
234 3cbg_A O-methyltransferase; cy 32.3 92 0.0032 30.5 7.3 66 88-155 98-169 (232)
235 3beo_A UDP-N-acetylglucosamine 31.9 2.5E+02 0.0084 28.6 10.8 44 147-197 291-341 (375)
236 3e8x_A Putative NAD-dependent 31.5 52 0.0018 31.9 5.3 57 83-141 17-74 (236)
237 4faj_A PRGZ; substrate binding 31.5 10 0.00034 39.9 0.0 17 709-725 136-152 (564)
238 1ws6_A Methyltransferase; stru 31.5 1.1E+02 0.0038 27.5 7.2 66 89-155 65-132 (171)
239 2tps_A Protein (thiamin phosph 31.2 2.2E+02 0.0076 27.4 9.9 77 116-197 122-221 (227)
240 4eq9_A ABC transporter substra 30.9 2E+02 0.0067 27.0 9.2 107 83-201 111-222 (246)
241 1fy2_A Aspartyl dipeptidase; s 30.9 69 0.0024 32.0 6.2 65 86-157 30-100 (229)
242 3tr9_A Dihydropteroate synthas 30.4 11 0.00036 40.4 0.0 13 594-606 300-312 (314)
243 3tql_A Arginine-binding protei 30.3 1.3E+02 0.0044 27.7 7.7 105 84-201 106-215 (227)
244 3qz6_A HPCH/HPAI aldolase; str 30.1 1.4E+02 0.0047 30.6 8.3 91 103-195 6-110 (261)
245 2c6q_A GMP reductase 2; TIM ba 30.0 2.4E+02 0.0083 30.1 10.6 94 87-183 132-255 (351)
246 4f3p_A Glutamine-binding perip 29.9 1.5E+02 0.0051 28.3 8.2 53 84-141 127-179 (249)
247 4g92_A HAPB protein; transcrip 29.8 52 0.0018 27.2 3.9 27 732-758 36-63 (64)
248 1lst_A Lysine, arginine, ornit 29.2 91 0.0031 29.3 6.5 54 85-141 109-162 (239)
249 2yw3_A 4-hydroxy-2-oxoglutarat 29.2 2.1E+02 0.007 28.1 9.2 85 108-199 101-201 (207)
250 3odm_A Pepcase, PEPC, phosphoe 29.1 12 0.0004 42.9 0.0 21 716-738 83-103 (560)
251 3khj_A Inosine-5-monophosphate 29.1 1.6E+02 0.0053 31.8 8.9 90 88-180 118-235 (361)
252 1uir_A Polyamine aminopropyltr 28.7 1.3E+02 0.0043 31.4 7.9 66 88-156 102-183 (314)
253 3tb6_A Arabinose metabolism tr 28.5 1.7E+02 0.0057 28.8 8.5 64 99-168 33-105 (298)
254 3i45_A Twin-arginine transloca 28.4 1.8E+02 0.006 30.2 9.1 77 87-166 142-231 (387)
255 2kx7_A Sensor-like histidine k 28.3 56 0.0019 30.0 4.3 92 85-200 5-101 (117)
256 3huu_A Transcription regulator 28.2 2.3E+02 0.0078 28.2 9.6 89 100-198 46-142 (305)
257 2b2c_A Spermidine synthase; be 28.1 74 0.0025 33.4 6.0 54 87-143 132-192 (314)
258 1uoz_A Putative cellulase; hyd 27.9 13 0.00045 39.7 0.1 7 735-741 161-167 (315)
259 3u3x_A Oxidoreductase; structu 27.8 2.4E+02 0.008 29.8 10.0 29 167-195 105-135 (361)
260 1iy9_A Spermidine synthase; ro 27.8 95 0.0033 31.6 6.7 66 88-156 100-177 (275)
261 3a5i_A Flagellar biosynthesis 27.5 13 0.00044 40.9 0.0 14 599-612 3-16 (389)
262 1jr2_A Uroporphyrinogen-III sy 27.2 13 0.00045 38.2 0.0 7 605-611 9-15 (286)
263 3ajd_A Putative methyltransfer 27.2 1.5E+02 0.0051 29.9 8.0 54 88-141 109-164 (274)
264 3cvo_A Methyltransferase-like 27.1 1.1E+02 0.0038 30.3 6.7 54 88-141 52-130 (202)
265 1vgv_A UDP-N-acetylglucosamine 27.1 1.6E+02 0.0054 30.2 8.4 34 162-197 301-341 (384)
266 3tfw_A Putative O-methyltransf 26.9 90 0.0031 31.0 6.2 105 88-199 89-197 (248)
267 2orv_A Thymidine kinase; TP4A 26.9 32 0.0011 35.2 2.8 84 86-185 46-135 (234)
268 1j8m_F SRP54, signal recogniti 26.7 64 0.0022 33.6 5.2 54 86-141 125-188 (297)
269 1xx6_A Thymidine kinase; NESG, 26.4 19 0.00064 35.4 0.9 90 86-186 35-128 (191)
270 4grv_A Neurotensin receptor ty 26.3 14 0.00048 40.8 0.0 11 598-608 498-508 (510)
271 3c0k_A UPF0064 protein YCCW; P 26.2 1.4E+02 0.0048 31.9 8.0 54 88-141 244-301 (396)
272 3ip3_A Oxidoreductase, putativ 26.2 72 0.0025 33.2 5.5 86 90-197 28-116 (337)
273 3rce_A Oligosaccharide transfe 26.1 14 0.00048 43.8 0.0 9 556-564 694-702 (724)
274 2oar_A Large-conductance mecha 26.0 14 0.00049 36.2 0.0 7 719-725 117-123 (174)
275 2rgy_A Transcriptional regulat 26.0 2.5E+02 0.0084 27.7 9.3 61 99-168 26-96 (290)
276 1qop_A Tryptophan synthase alp 25.9 49 0.0017 33.9 4.0 62 132-195 43-143 (268)
277 2b78_A Hypothetical protein SM 25.7 1.3E+02 0.0046 32.1 7.7 54 88-141 236-293 (385)
278 3ntv_A MW1564 protein; rossman 25.7 95 0.0033 30.3 6.0 64 88-156 96-164 (232)
279 2xxa_A Signal recognition part 25.5 60 0.0021 35.8 4.9 53 87-141 129-191 (433)
280 3k4h_A Putative transcriptiona 25.5 2E+02 0.0067 28.3 8.4 89 100-198 32-129 (292)
281 3h7m_A Sensor protein; histidi 25.5 1.6E+02 0.0056 27.3 7.5 101 84-200 114-216 (234)
282 2al1_A Enolase 1, 2-phospho-D- 25.4 55 0.0019 36.3 4.6 94 94-191 219-355 (436)
283 1xj5_A Spermidine synthase 1; 25.3 76 0.0026 33.7 5.5 56 87-144 144-206 (334)
284 3orh_A Guanidinoacetate N-meth 25.3 76 0.0026 31.3 5.2 51 89-141 85-136 (236)
285 2fli_A Ribulose-phosphate 3-ep 25.2 55 0.0019 31.8 4.2 91 100-193 98-215 (220)
286 3egc_A Putative ribose operon 25.1 1.1E+02 0.0037 30.3 6.4 60 100-168 27-93 (291)
287 3dfz_A SIRC, precorrin-2 dehyd 25.1 15 0.00052 37.2 0.0 10 719-728 176-185 (223)
288 1r62_A Nitrogen regulation pro 25.1 33 0.0011 30.7 2.3 35 24-65 124-158 (160)
289 3r2g_A Inosine 5'-monophosphat 25.0 2.4E+02 0.0082 30.5 9.4 87 87-180 112-227 (361)
290 2gjl_A Hypothetical protein PA 25.0 2.7E+02 0.0094 28.9 9.8 72 103-180 110-200 (328)
291 3h5l_A Putative branched-chain 25.0 1E+02 0.0035 32.5 6.5 75 88-166 165-250 (419)
292 2v5j_A 2,4-dihydroxyhept-2-ENE 24.9 3.1E+02 0.01 28.5 10.0 88 103-193 30-131 (287)
293 1wxx_A TT1595, hypothetical pr 24.9 1.5E+02 0.0052 31.5 7.9 55 87-141 231-287 (382)
294 3brq_A HTH-type transcriptiona 24.6 3.4E+02 0.012 26.4 10.0 62 99-168 39-107 (296)
295 3b9f_I Protein C inhibitor; mi 24.5 16 0.00054 39.9 0.0 13 718-730 160-172 (395)
296 3h2s_A Putative NADH-flavin re 24.5 1E+02 0.0034 29.3 5.8 55 88-144 1-56 (224)
297 1rd5_A Tryptophan synthase alp 24.5 98 0.0034 31.2 6.0 45 147-194 82-138 (262)
298 2px7_A 2-C-methyl-D-erythritol 24.4 16 0.00054 36.4 0.0 8 717-724 126-133 (236)
299 3l49_A ABC sugar (ribose) tran 24.4 1.4E+02 0.0047 29.4 7.0 92 99-197 23-120 (291)
300 3s28_A Sucrose synthase 1; gly 24.3 2.5E+02 0.0086 33.6 10.3 104 88-199 604-731 (816)
301 2r9r_B Paddle chimera voltage 24.3 16 0.00055 41.4 0.0 8 718-725 141-148 (514)
302 1ii5_A SLR1257 protein; membra 24.3 1.7E+02 0.0056 27.2 7.2 51 84-141 113-163 (233)
303 3r75_A Anthranilate/para-amino 24.2 78 0.0027 36.9 5.8 49 86-140 445-493 (645)
304 3l6u_A ABC-type sugar transpor 24.1 1.2E+02 0.004 29.9 6.4 90 100-197 27-125 (293)
305 2c0d_A Thioredoxin peroxidase 24.0 16 0.00056 36.3 0.0 9 718-726 103-111 (221)
306 3dbi_A Sugar-binding transcrip 23.9 4.4E+02 0.015 26.6 11.0 63 99-168 81-149 (338)
307 3e3m_A Transcriptional regulat 23.9 2.4E+02 0.0082 29.0 9.0 91 99-198 88-185 (355)
308 2akz_A Gamma enolase, neural; 23.8 62 0.0021 35.9 4.6 95 94-192 217-353 (439)
309 2gk3_A Putative cytoplasmic pr 23.5 42 0.0014 34.2 3.0 36 101-141 43-85 (256)
310 4avf_A Inosine-5'-monophosphat 23.5 3.7E+02 0.013 30.0 10.9 91 87-180 241-360 (490)
311 2yln_A Putative ABC transporte 23.3 2.9E+02 0.01 27.2 9.3 102 84-201 161-264 (283)
312 2qrj_A Saccharopine dehydrogen 23.3 17 0.00059 40.0 0.0 10 717-726 127-136 (394)
313 2esr_A Methyltransferase; stru 23.1 86 0.0029 28.7 4.9 65 88-155 55-123 (177)
314 3bbl_A Regulatory protein of L 23.1 2.2E+02 0.0076 28.0 8.3 61 99-168 26-93 (287)
315 2vws_A YFAU, 2-keto-3-deoxy su 23.0 3.7E+02 0.013 27.3 10.1 88 103-193 9-110 (267)
316 2hnk_A SAM-dependent O-methylt 23.0 2.5E+02 0.0087 27.1 8.6 67 88-156 86-169 (239)
317 2as0_A Hypothetical protein PH 22.9 1.8E+02 0.006 31.1 8.0 54 88-141 241-297 (396)
318 2gpy_A O-methyltransferase; st 22.8 1.8E+02 0.0061 28.1 7.3 66 88-156 79-148 (233)
319 3m9w_A D-xylose-binding peripl 22.8 1.5E+02 0.005 29.8 6.9 63 99-168 20-89 (313)
320 3u81_A Catechol O-methyltransf 22.8 96 0.0033 29.9 5.4 57 87-143 83-145 (221)
321 3hv1_A Polar amino acid ABC up 22.8 2.5E+02 0.0085 27.0 8.4 55 84-141 124-183 (268)
322 2igt_A SAM dependent methyltra 22.7 1.2E+02 0.0039 32.1 6.3 54 88-141 176-233 (332)
323 4h08_A Putative hydrolase; GDS 22.7 3.2E+02 0.011 25.3 9.0 78 88-168 21-117 (200)
324 3ic5_A Putative saccharopine d 22.6 1.7E+02 0.0058 24.5 6.4 52 87-141 5-57 (118)
325 2v82_A 2-dehydro-3-deoxy-6-pho 22.4 2.7E+02 0.0092 26.7 8.5 72 104-180 94-175 (212)
326 3k9c_A Transcriptional regulat 22.4 1.3E+02 0.0045 29.8 6.4 59 100-168 30-94 (289)
327 3ia7_A CALG4; glycosysltransfe 22.3 1.2E+02 0.0041 31.3 6.3 9 132-140 101-109 (402)
328 1v4v_A UDP-N-acetylglucosamine 22.3 3.4E+02 0.012 27.6 9.8 34 162-197 293-333 (376)
329 2ixa_A Alpha-N-acetylgalactosa 22.2 1.9E+02 0.0064 31.5 8.1 31 167-197 108-140 (444)
330 3l9w_A Glutathione-regulated p 22.1 70 0.0024 35.0 4.6 87 86-180 26-121 (413)
331 2r6o_A Putative diguanylate cy 22.0 79 0.0027 32.7 4.8 90 103-194 168-278 (294)
332 2yci_X 5-methyltetrahydrofolat 21.9 6.6E+02 0.022 25.8 12.0 94 101-195 115-251 (271)
333 3o74_A Fructose transport syst 21.9 1.3E+02 0.0043 29.3 6.1 61 100-168 21-88 (272)
334 3ot5_A UDP-N-acetylglucosamine 21.9 3.3E+02 0.011 29.1 9.9 35 161-197 319-360 (403)
335 3bwc_A Spermidine synthase; SA 21.9 1.4E+02 0.0047 30.8 6.6 67 88-156 120-198 (304)
336 3k9f_C DNA topoisomerase 4 sub 21.8 19 0.00066 37.5 0.0 7 632-638 38-44 (268)
337 1d1d_A Protein (capsid protein 21.7 19 0.00066 37.5 0.0 9 716-724 156-164 (262)
338 3eey_A Putative rRNA methylase 21.7 95 0.0032 29.0 4.9 55 89-146 49-108 (197)
339 3tq8_A Dihydrofolate reductase 21.7 23 0.00079 34.6 0.6 8 596-603 166-173 (178)
340 3mpk_A Virulence sensor protei 21.7 2.2E+02 0.0075 27.7 7.8 103 84-199 136-238 (267)
341 3c1r_A Glutaredoxin-1; oxidize 21.7 33 0.0011 30.5 1.5 69 98-169 13-89 (118)
342 3axs_A Probable N(2),N(2)-dime 21.7 91 0.0031 34.0 5.3 51 88-141 78-133 (392)
343 1eep_A Inosine 5'-monophosphat 21.4 3.5E+02 0.012 29.1 10.0 80 98-180 180-284 (404)
344 3h5o_A Transcriptional regulat 21.4 2.3E+02 0.008 28.8 8.3 89 99-198 80-176 (339)
345 2i2c_A Probable inorganic poly 21.4 75 0.0026 32.6 4.4 87 89-198 2-93 (272)
346 1geq_A Tryptophan synthase alp 21.3 1.4E+02 0.0048 29.5 6.3 72 121-198 22-132 (248)
347 3tsm_A IGPS, indole-3-glycerol 21.2 2.9E+02 0.0098 28.6 8.8 83 100-187 158-260 (272)
348 3bo9_A Putative nitroalkan dio 21.1 3.7E+02 0.013 28.1 9.8 72 103-180 116-204 (326)
349 4b4u_A Bifunctional protein fo 20.9 5E+02 0.017 27.4 10.6 105 86-193 54-171 (303)
350 1xm3_A Thiazole biosynthesis p 20.8 1.8E+02 0.0061 29.6 7.1 64 111-180 126-206 (264)
351 2pk2_A Cyclin-T1, protein TAT; 20.6 21 0.00072 38.5 0.0 14 727-740 320-335 (358)
352 2fep_A Catabolite control prot 20.4 3.5E+02 0.012 26.7 9.1 91 99-198 34-131 (289)
353 2nv0_A Glutamine amidotransfer 20.3 94 0.0032 29.7 4.6 44 88-140 2-45 (196)
354 3gv0_A Transcriptional regulat 20.1 2E+02 0.007 28.3 7.3 59 101-168 30-95 (288)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.88 E-value=5.7e-23 Score=194.99 Aligned_cols=111 Identities=32% Similarity=0.635 Sum_probs=102.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+.+|||||||++.+|..++.+|+.+||. |.+|.+|.+|+++++. ..|||||+|+ ||+|||++++++||+....+.+
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~--~~~DlillD~~MP~mdG~el~~~ir~~~~~~~i 88 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKK--GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHL 88 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCC
Confidence 4579999999999999999999999996 6689999999999998 7899999999 9999999999999987777889
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ +++++||++||.|||++++|..+|.++++|
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99965 679999999999999999999999998865
No 2
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.85 E-value=1.1e-21 Score=195.67 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=98.6
Q ss_pred HHHhCCccccCCccCccccccccceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEEecChhhHHHHHHHHHhCCC-
Q 004184 34 QHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLVENDDSTRHVVAALLRNCGY- 112 (770)
Q Consensus 34 v~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~- 112 (770)
..+|||.|.++|++|+ |+.|+|.+++ ..+....... .......+..++||||||++.++..|..+|+.+||
T Consensus 16 ~~~hgG~i~v~S~~g~----Gs~f~~~lP~--~~~~~~~~~~--~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~ 87 (206)
T 3mm4_A 16 RGSHMASTDSESETRV----KSVRTGRKPI--GNPEDEQETS--KPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVS 87 (206)
T ss_dssp -----------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCS
T ss_pred ccccCCceeeeccCCC----cceeeeccCC--CCCccccccc--CCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4678888888777766 4444444443 3222111111 11112335678999999999999999999999999
Q ss_pred EEEEECCHHHHHHHHHhc-----------CCCceEEEEcc-CCCCCHHHHHHHHHhhcC--CCCcchhhh----------
Q 004184 113 EVTEATNGLQAWKILEDL-----------TNHIDLVLTEV-MPCLSGVALLSKIMSHKT--RKNLPVIIF---------- 168 (770)
Q Consensus 113 eV~~A~dg~EALe~L~~~-----------~~~pDLVLlDi-MPgmdGleLlr~IR~~~~--~~~IPIIvl---------- 168 (770)
.|..+.++.+|++++... ...|||||+|+ ||+++|++++++||+... .+.+|||++
T Consensus 88 ~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~ 167 (206)
T 3mm4_A 88 EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEA 167 (206)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHH
T ss_pred eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHH
Confidence 899999999999999862 13799999999 999999999999997521 367888855
Q ss_pred -hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 169 -KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 169 -~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++++.|+++||.||++ +|..+|+.++++.+
T Consensus 168 ~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 168 RETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 5788999999999999 99999999887654
No 3
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.82 E-value=3e-21 Score=180.87 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=96.7
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
.+.+|||||||++.++..++.+|+.+||+|+ +|.++++|++++++ ..|||||+|+ ||+|||++++++||+. +
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~--~~~DlvllDi~mP~~~G~el~~~lr~~----~ 79 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK--GQFDIAIIDVNLDGEPSYPVADILAER----N 79 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH--CCSSEEEECSSSSSCCSHHHHHHHHHT----C
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHcC----C
Confidence 3568999999999999999999999999986 79999999999998 8899999999 9999999999999973 5
Q ss_pred cchhhhhh-------HhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 163 LPVIIFKC-------LSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 163 IPIIvl~a-------l~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+|||++++ .++|+++||.|||++++|..+|.++++
T Consensus 80 ipvI~lTa~~~~~~~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 80 VPFIFATGYGSKGLDTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CSSCCBCTTCTTSCCSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CCEEEEecCccHHHHHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 89998743 567999999999999999999987654
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.79 E-value=4.5e-19 Score=163.79 Aligned_cols=115 Identities=28% Similarity=0.535 Sum_probs=102.7
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
|...+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+
T Consensus 2 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~ 79 (136)
T 3t6k_A 2 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYK--NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTL 79 (136)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCc
Confidence 345789999999999999999999999999999999999999988 7899999999 9999999999999986545678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
|||++ ++++.|+++||.||++.++|..+|++++++...
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 88854 678999999999999999999999999986543
No 5
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.79 E-value=4.8e-19 Score=160.61 Aligned_cols=108 Identities=33% Similarity=0.528 Sum_probs=100.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~--~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSE--FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 489999999999999999999999999999999999999987 7899999999 9999999999999987656788988
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
++ ++++.|+++||.||++.++|..+|+++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 65 67899999999999999999999998874
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.76 E-value=3.4e-18 Score=155.89 Aligned_cols=112 Identities=30% Similarity=0.596 Sum_probs=99.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
..++||||||++..+..++.+|+..||. |..+.++.+|++.+.. ...|||||+|+ ||+++|++++++||+....+.+
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~-~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~ 82 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA-NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEI 82 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH-CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Confidence 4578999999999999999999999995 8899999999998875 24699999999 9999999999999986555788
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ ++++.|+++||.||++.++|..+|+.++++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 88854 678999999999999999999999988753
No 7
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.75 E-value=4.2e-18 Score=153.64 Aligned_cols=106 Identities=29% Similarity=0.505 Sum_probs=97.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. ..+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ii 77 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEE--LQPDLILLDIMLPNKDGVEVCREVRKK---YDMPII 77 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCSEEEEETTSTTTHHHHHHHHHHTT---CCSCEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 489999999999999999999999999999999999999987 7899999999 9999999999999874 357877
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .+++.||++||.||++.++|..+|++++++
T Consensus 78 ~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 78 MLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 54 678999999999999999999999988764
No 8
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.75 E-value=5.3e-18 Score=153.27 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=101.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ 79 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMST--RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSK 79 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCE
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCC
Confidence 45799999999999999999999999999999999999999988 7899999999 99999999999999875467889
Q ss_pred hhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .++..|+++||.||++.++|.++|.+.++...
T Consensus 80 ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 80 FVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred EEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 8865 57889999999999999999999998876643
No 9
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.74 E-value=7.7e-18 Score=171.85 Aligned_cols=111 Identities=26% Similarity=0.458 Sum_probs=102.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+|
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 97 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARE--TRPDAVILDVXMPGMDGFGVLRRLRADG--IDAP 97 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 46799999999999999999999999999999999999999987 7799999999 99999999999999864 5788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .++++||++||.||++.++|..+|+.++++..
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 8854 67999999999999999999999999998754
No 10
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.74 E-value=9.3e-18 Score=154.21 Aligned_cols=116 Identities=16% Similarity=0.298 Sum_probs=103.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR--RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 45799999999999999999999999999999999999999988 7899999999 99999999999999854457888
Q ss_pred hhhh-----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 165 VIIF-----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 165 IIvl-----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
||++ .++..|+++||.||++.++|..+|.+++++.....
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~~ 132 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEGK 132 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC---
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCCC
Confidence 8854 56788999999999999999999999999876544
No 11
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.74 E-value=9.8e-18 Score=155.08 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=105.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
+.+++||||||++..+..+..+|+..||. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+....+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ--AKYDLIILDIGLPIANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp --CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT--CCCSEEEECTTCGGGCHHHHHHHHHSSSTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhccccc
Confidence 45689999999999999999999999987 8899999999999987 7899999999 99999999999999854567
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCC-CHHHHHHHHHHHHHHhhcCCC
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPI-RKNELKNLWQHVWRRCHSSSG 204 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~-~~eeL~~~L~~vlrr~~~~s~ 204 (770)
.+|||++ ++++.|+++||.||+ +.++|..+|+.+++++.....
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~~~~ 134 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLTVNH 134 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHhccC
Confidence 8888855 678999999999999 999999999999998766543
No 12
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.74 E-value=1.3e-17 Score=157.23 Aligned_cols=114 Identities=26% Similarity=0.470 Sum_probs=104.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+....+.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSL--TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTT--CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 45799999999999999999999999999999999999999987 7899999999 99999999999999875557888
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
||++ .++..|+++||.||++.++|..+|++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 8854 678999999999999999999999999987644
No 13
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.74 E-value=5.6e-18 Score=160.14 Aligned_cols=109 Identities=29% Similarity=0.503 Sum_probs=99.4
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCC--CceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTN--HIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~--~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
..+++||||||++..+..|..+|+..||+++ .+.++.+|++.+.. . .|||||+|+ ||+++|+++++.||+..
T Consensus 34 ~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~--~~~~~dliilD~~l~~~~g~~~~~~lr~~~-- 109 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKN--HYPNIDIVTLXITMPKMDGITCLSNIMEFD-- 109 (157)
T ss_dssp TEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HGGGCCEEEECSSCSSSCHHHHHHHHHHHC--
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--cCCCCCEEEEeccCCCccHHHHHHHHHhhC--
Confidence 3457999999999999999999999999998 99999999999987 5 789999999 99999999999999865
Q ss_pred CCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 161 KNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 161 ~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+.+|||++ .+++.|+++||.||++.++|..+|+++++
T Consensus 110 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 67788754 67899999999999999999999988764
No 14
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.74 E-value=3.5e-18 Score=180.44 Aligned_cols=110 Identities=21% Similarity=0.304 Sum_probs=102.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~I 163 (770)
..+||||||++.++..++.+|+..||.|. .|.+|.+||+.+.. ..|||||+|+ || +|||+++++.||+.. .+
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~--~~~dlvl~D~~MPd~mdG~e~~~~ir~~~---~~ 234 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTR--RTPGLVLADIQLADGSSGIDAVKDILGRM---DV 234 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--CCCSEEEEESCCTTSCCTTTTTHHHHHHT---TC
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHh--CCCCEEEEcCCCCCCCCHHHHHHHHHhcC---CC
Confidence 45899999999999999999999999999 99999999999998 7899999999 99 899999999999875 89
Q ss_pred chhhh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl--------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
|||++ +++.+|+++||.|||++++|..+|..++.+...
T Consensus 235 piI~lT~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~~ 280 (286)
T 3n0r_A 235 PVIFITAFPERLLTGERPEPTFLITKPFQPETVKAAIGQALFFHPR 280 (286)
T ss_dssp CEEEEESCGGGGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSCC
T ss_pred CEEEEeCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCCc
Confidence 99976 568899999999999999999999999987543
No 15
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.74 E-value=3.4e-18 Score=166.58 Aligned_cols=112 Identities=17% Similarity=0.331 Sum_probs=101.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
|.+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+
T Consensus 5 m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~ 80 (184)
T 3rqi_A 5 MSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGA--EKFEFITVXLHLGNDSGLSLIAPLCDLQ--PDA 80 (184)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTT--SCCSEEEECSEETTEESHHHHHHHHHHC--TTC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeccCCCccHHHHHHHHHhcC--CCC
Confidence 456899999999999999999999999999999999999999987 7899999999 99999999999999864 678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ .++..||++||.||++.++|..+|..++++..
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 81 RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 88855 68999999999999999999999998887643
No 16
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.74 E-value=1.9e-17 Score=151.59 Aligned_cols=110 Identities=22% Similarity=0.372 Sum_probs=100.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIEN--EFFNLALFXIKLPDMEGTELLEKAHKLR--PGMKK 78 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCchHHHHHHHHhhC--CCCcE
Confidence 4689999999999999999999999999999999999999987 7899999999 99999999999999764 57888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|++ .+++.|+++||.||++.++|..+|++++++..
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 754 67899999999999999999999999987653
No 17
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.2e-17 Score=155.66 Aligned_cols=112 Identities=23% Similarity=0.470 Sum_probs=95.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc--CCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK--TRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~--~~~ 161 (770)
.+.++||||||++..+..++.+|+..||.|..+.++++|++.+.. ..|||||+|+ ||+++|++++++||... ..+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAE--EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 456899999999999999999999999999999999999999987 7899999999 99999999999998542 235
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+|||++ .+++.|+++||.||++.++|..+|..++..
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 6788754 678999999999999999999999987654
No 18
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.73 E-value=3.6e-17 Score=145.95 Aligned_cols=108 Identities=27% Similarity=0.497 Sum_probs=99.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNE--HIPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 479999999999999999999999999999999999999987 7899999999 99999999999999753 567887
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .+++.|+++||.||++.++|..+|++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 54 6789999999999999999999999998764
No 19
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.73 E-value=1.5e-17 Score=153.25 Aligned_cols=111 Identities=23% Similarity=0.415 Sum_probs=98.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNA--TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 4689999999999999999999999999999999999999987 7899999999 999999999999998654567888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..|+++||.||++.++|..+|..++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 865 2345668999999999999999999988653
No 20
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.73 E-value=2.5e-17 Score=151.34 Aligned_cols=117 Identities=20% Similarity=0.399 Sum_probs=105.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
...++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKK--GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 356799999999999999999999999999999999999999987 7899999999 9999999999999985445788
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
|||++ .++..|+++||.||++.++|..+|++++++.+...
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 132 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQT 132 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhcc
Confidence 98865 67899999999999999999999999998876554
No 21
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.73 E-value=2.9e-17 Score=148.57 Aligned_cols=109 Identities=25% Similarity=0.431 Sum_probs=99.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||||||++..+..++.+|+..||.|..+.++.++++.+.. ..|||||+|+ ||+++|++++++|++.. +.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPD--VRNGVLVTDLRMPDMSGVELLRNLGDLK--INIP 77 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGG--CCSEEEEEECCSTTSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHhcC--CCCC
Confidence 35689999999999999999999999999999999999999987 7899999999 99999999999999753 5778
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ ++++.|+++||.||++.++|..+|++++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 78 SIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 8754 678999999999999999999999998764
No 22
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.73 E-value=2.6e-17 Score=170.55 Aligned_cols=116 Identities=29% Similarity=0.463 Sum_probs=104.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCC-CceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~-~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. . .|||||+|+ ||+++|++++++||+......+
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~--~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~ 200 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ--HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQL 200 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCC
Confidence 46799999999999999999999999999999999999999986 4 489999999 9999999999999987655678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
|||++ ++++.||++||.||++.++|..+|++++++.....
T Consensus 201 ~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~~~ 250 (259)
T 3luf_A 201 AIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQFN 250 (259)
T ss_dssp EEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhhhc
Confidence 88854 67999999999999999999999999999876554
No 23
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.73 E-value=4.3e-17 Score=152.36 Aligned_cols=117 Identities=21% Similarity=0.424 Sum_probs=103.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILED-------LTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~-------~~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
.++||||||++..+..+..+|+..|+ .|..+.++.+|++.+.. ....|||||+|+ ||+++|+++++.||+
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 47999999999999999999999998 89999999999999961 126799999999 999999999999998
Q ss_pred hcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 157 HKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 157 ~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
....+.+|||++ .+++.|+++||.||++.++|..+|+++.+.+....
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 140 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSVMQ 140 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTTSC
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHHcC
Confidence 655678888855 67899999999999999999999999987765443
No 24
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.73 E-value=2e-17 Score=152.06 Aligned_cols=112 Identities=26% Similarity=0.506 Sum_probs=96.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYE-VTEATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~e-V~~A~dg~EALe~L~~~---~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+... ...|||||+|+ ||+++|++++++||+.. .+
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~-~~ 80 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDL-GY 80 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHS-CC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhc-CC
Confidence 368999999999999999999999985 77999999999988641 14699999999 99999999999999742 24
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+|||++ ++++.||++||.||++.++|..+|++++...
T Consensus 81 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 128 (133)
T 2r25_B 81 TSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY 128 (133)
T ss_dssp CSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence 5787754 6789999999999999999999999887544
No 25
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.72 E-value=3e-17 Score=149.15 Aligned_cols=114 Identities=26% Similarity=0.365 Sum_probs=101.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..++.+|+ .||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALA--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 4689999999999999999999 89999999999999999988 7899999999 999999999999998755578898
Q ss_pred hhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 166 IIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 166 Ivl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
|++ .++..|+++||.||++.++|..+|++++++.....
T Consensus 81 i~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~~ 127 (133)
T 3nhm_A 81 IFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAEAEG 127 (133)
T ss_dssp EEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC---
T ss_pred EEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcccC
Confidence 865 57889999999999999999999999998865443
No 26
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.72 E-value=3.7e-17 Score=147.62 Aligned_cols=112 Identities=28% Similarity=0.540 Sum_probs=99.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~-eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||+....+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 346899999999999999999999999 68899999999999986 7899999999 9999999999999985445678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|||++ .+++.|+++||.||++.++|..+|++++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 88754 6789999999999999999999999998764
No 27
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.72 E-value=5.1e-17 Score=145.71 Aligned_cols=108 Identities=28% Similarity=0.513 Sum_probs=98.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~i 77 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSE--YDINLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEECSSCSSSCHHHHHHHHHHH---CCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhC---CCCcE
Confidence 4589999999999999999999999999999999999999987 7899999999 9999999999999976 46777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .+++.|+++||.||++.++|..+|+.++++.
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 744 6789999999999999999999999988764
No 28
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.72 E-value=4.7e-17 Score=150.03 Aligned_cols=115 Identities=27% Similarity=0.451 Sum_probs=103.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+......|||||+|+ ||+++|+++++.||... +.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 79 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHMA 79 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTCE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCe
Confidence 46799999999999999999999999999999999999999983226899999999 99999999999999864 6788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
||++ .++..|+++||.||++.++|..+|..++++....
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 80 VIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 8854 6799999999999999999999999999876543
No 29
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.72 E-value=2.5e-17 Score=147.57 Aligned_cols=109 Identities=26% Similarity=0.468 Sum_probs=98.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARE--NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 479999999999999999999999999999999999999987 6799999999 9999999999999986445678888
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .+++.|+++||.||++.++|..+|++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 54 668899999999999999999999988753
No 30
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.72 E-value=3.9e-17 Score=150.88 Aligned_cols=114 Identities=25% Similarity=0.349 Sum_probs=100.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCHHHHHHHHHhhcCCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdGleLlr~IR~~~~~~~ 162 (770)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ...|||||+|+ ||+ ++|+++++.|++. +.
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~ 78 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSG-GWYPDLILMDIELGEGMDGVQTALAIQQI---SE 78 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT-TCCCSEEEEESSCSSSCCHHHHHHHHHHH---CC
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhc-CCCCCEEEEeccCCCCCCHHHHHHHHHhC---CC
Confidence 356799999999999999999999999999999999999999974 25799999999 985 9999999999975 57
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
+|||++ +++..|+++||.||++.++|..+|..++++.+..
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 79 LPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 888855 6788999999999999999999999999876543
No 31
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.72 E-value=2.1e-17 Score=149.40 Aligned_cols=110 Identities=29% Similarity=0.521 Sum_probs=99.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~-eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
+++||||||++..+..+..+|+..|| .|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++||+....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQ--NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHT--SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHc--CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 46899999999999999999999999 78899999999999987 7899999999 99999999999999764456788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ .+++.|+++||.||++.++|..+|++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 8854 678899999999999999999999998865
No 32
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.71 E-value=2.8e-17 Score=147.87 Aligned_cols=107 Identities=27% Similarity=0.524 Sum_probs=97.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTK--ERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRV 78 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCTTCCHHHHHHHHHHHC--TTCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHHhC--CCCCE
Confidence 3589999999999999999999999999999999999999987 6799999999 99999999999999763 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|++ +++..|+++||.||++.++|..+|+++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 79 IIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 854 67889999999999999999999988764
No 33
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.71 E-value=6.1e-17 Score=151.82 Aligned_cols=111 Identities=25% Similarity=0.430 Sum_probs=102.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||... +.+|
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 88 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLAS--REVDLVISAAHLPQMDGPTLLARIHQQY--PSTT 88 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHc--CCCCEEEEeCCCCcCcHHHHHHHHHhHC--CCCe
Confidence 45799999999999999999999999999999999999999988 7899999999 99999999999999854 6788
Q ss_pred hhhh----------hhHhcC-CCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aG-AddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .++..| +++||.||++.++|..+|.+++++.+
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 8854 678999 99999999999999999999998754
No 34
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.71 E-value=8.9e-17 Score=143.90 Aligned_cols=107 Identities=23% Similarity=0.445 Sum_probs=98.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+ ||+++|+++++.||+ .+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~ii 77 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN--QSVDLILLDINLPDENGLMLTRALRE---RSTVGII 77 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHT---TCCCEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhc--CCCCEEEEeCCCCCCChHHHHHHHHh---cCCCCEE
Confidence 589999999999999999999999999999999999999987 7899999999 999999999999997 2567887
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .+++.|+++||.||++.++|..+|++++++.
T Consensus 78 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 78 LVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 54 6789999999999999999999999998774
No 35
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.71 E-value=3.8e-17 Score=149.67 Aligned_cols=111 Identities=23% Similarity=0.407 Sum_probs=96.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+++||||||++..+..++.+|+..| +.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. .+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~--~~~dlvilD~~lp~~~g~~~~~~l~~~--~~~~ 78 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEE--YNPNVVILDIEMPGMTGLEVLAEIRKK--HLNI 78 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHT--TCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHHH--CCCC
Confidence 4689999999999999999999876 556789999999999987 6799999999 9999999999999975 3678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
|||++ +++..|+++||.||++.++|..+|++++++...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 88854 678999999999999999999999998876543
No 36
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.71 E-value=1.6e-17 Score=152.85 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=101.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg--mdGleLlr~IR~~~~~~~ 162 (770)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+ ++|++++++||+.. +.
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~ 80 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRG--FH 80 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTT--CC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCC--CC
Confidence 34699999999999999999999999999999999999999976 7899999999 999 99999999999864 67
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
+|||++ ++++.|+++||.||++.++|..+|++++.......
T Consensus 81 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 131 (136)
T 3kto_A 81 LPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKEGH 131 (136)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCCCC
Confidence 888854 67899999999999999999999999998865443
No 37
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.71 E-value=6.2e-17 Score=149.38 Aligned_cols=111 Identities=24% Similarity=0.375 Sum_probs=100.2
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~---~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFS--NKYDLIFLEIILSDGDGWTLCKKIRNVT---TCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--CCCSEEEEESEETTEEHHHHHHHHHTTC---CCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHccCC---CCCE
Confidence 4689999999999999999999999999999999999999987 7899999999 99999999999999753 6777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
|++ .+++.|+++||.||++.++|..+|++++++....
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~~ 125 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSY 125 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhhhc
Confidence 754 6789999999999999999999999998876543
No 38
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.71 E-value=4.6e-17 Score=150.77 Aligned_cols=116 Identities=22% Similarity=0.415 Sum_probs=103.0
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK--THPHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 356799999999999999999999999999999999999999987 6799999999 9999999999999984445778
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
|||++ .++..|+++||.||++.++|..+|..++++....
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 132 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYED 132 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 88855 6789999999999999999999999999876543
No 39
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.71 E-value=3.6e-17 Score=150.54 Aligned_cols=113 Identities=27% Similarity=0.403 Sum_probs=96.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..+..+|+.. |.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||.....+.+|
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDH--HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVP 78 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHH--HCCSEEEEETTC------CHHHHHHTSTTCTTCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCC
Confidence 4579999999999999999999988 999999999999999988 7899999999 99999999999999875447788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
||++ +++..|+++||.||++.++|..+|+.++++...
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 79 LILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 8855 678999999999999999999999999987543
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.71 E-value=5.3e-17 Score=151.75 Aligned_cols=112 Identities=25% Similarity=0.377 Sum_probs=100.4
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~ 160 (770)
...+++||||||++..+..|..+|+..+ +.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+..
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~-- 92 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEK--ESVDIAILDVEMPVKTGLEVLEWIRSEK-- 92 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTT--SCCSEEEECSSCSSSCHHHHHHHHHHTT--
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhc--cCCCEEEEeCCCCCCcHHHHHHHHHHhC--
Confidence 3457899999999999999999999887 788899999999999987 7899999999 99999999999999864
Q ss_pred CCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 161 KNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 161 ~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+.+|||++ .+++.|+++||.||++.++|..+|++++++.
T Consensus 93 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 93 LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 67888854 6789999999999999999999999998764
No 41
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.70 E-value=1e-16 Score=149.86 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=100.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhh
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSH 157 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~-----~~~pDLVLlDi-MPgmdGleLlr~IR~~ 157 (770)
..++||||||++..+..++.+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|+++++.||+.
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 457899999999999999999998887 788999999999999741 14699999999 9999999999999986
Q ss_pred cCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 158 KTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 158 ~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
...+.+|||++ ++++.||++||.||++.++|..+|+++++.+.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 139 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL 139 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence 44467888854 67899999999999999999999999987653
No 42
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.70 E-value=4.3e-17 Score=147.91 Aligned_cols=111 Identities=26% Similarity=0.471 Sum_probs=93.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+..++||||||++..+..+..+|+..||.+..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.+
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNGLKLLEHIRNRG--DQT 80 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT--CCCSEEEECCC-----CHHHHHHHHHTT--CCC
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC--CCC
Confidence 456799999999999999999999999999999999999999987 7899999999 99999999999999864 678
Q ss_pred chhhh----------hhHhcCCCcEEeCCC-CHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~-~~eeL~~~L~~vlrr~ 199 (770)
|||++ .+++.|+++||.||+ +.++|..+|++++++.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 88854 678999999999999 8999999999988653
No 43
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.70 E-value=8.9e-17 Score=147.21 Aligned_cols=115 Identities=21% Similarity=0.356 Sum_probs=102.3
Q ss_pred CCcEEEEEecChhhHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRN-CGYE-VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~-~G~e-V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
.+++||||||++..+..+..+|+. .||+ |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHT--VKPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHH--TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHh--cCCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 457999999999999999999999 8999 8899999999999988 7899999999 999999999999998544578
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
+|||++ .++..|+++||.||++.++|..+|++++++....
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 134 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKAT 134 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC--
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhccc
Confidence 888854 6789999999999999999999999999876543
No 44
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.70 E-value=4.7e-17 Score=148.94 Aligned_cols=113 Identities=27% Similarity=0.394 Sum_probs=103.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..+..+|+..+|.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGL--HAPDVIITDIRMPKLGGLEMLDRIKAGG--AKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHTT--CCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 35799999999999999999999999999999999999999988 7899999999 99999999999999864 6788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
||++ .++..|+++||.||++.++|..+|+++++.....
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 8754 6789999999999999999999999999876543
No 45
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.70 E-value=8.4e-17 Score=143.04 Aligned_cols=106 Identities=25% Similarity=0.515 Sum_probs=97.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEA--EQPDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHh--CCCCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 489999999999999999999999999999999999999987 6799999999 9999999999999974 467777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
++ .+++.|+++||.||++.++|..+|+.++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 54 678999999999999999999999998865
No 46
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.70 E-value=9.7e-17 Score=146.67 Aligned_cols=112 Identities=26% Similarity=0.407 Sum_probs=99.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCC-ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~-pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.+.+||||||++..+..++.+|+..||+|..+.++.+|+..+.. .. |||||+|+ ||+++|+++++.||+.. .+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~ 82 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY--QKRIGLMITDLRMQPESGLDLIRTIRASE-RAAL 82 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHTST-TTTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh--CCCCcEEEEeccCCCCCHHHHHHHHHhcC-CCCC
Confidence 35789999999999999999999999999999999999999987 55 99999999 99999999999999863 4678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ +++..|+++||.||++.++|..+|++++....
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 83 SIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred CEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 88854 67899999999999999999999999887543
No 47
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.70 E-value=1.1e-16 Score=145.16 Aligned_cols=112 Identities=21% Similarity=0.393 Sum_probs=98.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST--FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 35799999999999999999999999999999999999999988 7899999999 99999999999999865334556
Q ss_pred hhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ ++++.|+++||.||++.++|..+|++++...
T Consensus 83 ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 6533 6789999999999999999999999887654
No 48
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.70 E-value=2.5e-17 Score=148.19 Aligned_cols=110 Identities=27% Similarity=0.458 Sum_probs=100.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+....+.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 589999999999999999999999999999999999999876 7899999999 9999999999999976544678888
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .+++.|+++||.||++.++|..+|+.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 54 6788999999999999999999999998764
No 49
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=6.1e-17 Score=149.59 Aligned_cols=109 Identities=28% Similarity=0.430 Sum_probs=99.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+|||
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~ii 80 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIER--SKPQLIILDLKLPDMSGEDVLDWINQND--IPTSVI 80 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHH--HCCSEEEECSBCSSSBHHHHHHHHHHTT--CCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 389999999999999999999999999999999999999987 6799999999 99999999999999763 567877
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++ .+++.|+++||.||++.++|..+|+.++++..
T Consensus 81 ~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (137)
T 3cfy_A 81 IATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK 124 (137)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 54 67899999999999999999999999987643
No 50
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.70 E-value=2e-17 Score=152.26 Aligned_cols=116 Identities=26% Similarity=0.423 Sum_probs=100.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~-~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~I 163 (770)
+++||||||++..+..|+.+|+. .||+|..+.++.+|++.+.. ...|||||+|+ || +++|++++++||+....+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~-~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKD-LDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTT-CCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhc-CCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 57999999999999999999999 99999999999999999864 15799999999 99 99999999999984345788
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
|||++ +++..|+++||.||++.++|..+|+.++++.....
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRFR 132 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-----
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccccC
Confidence 88855 67899999999999999999999999998765443
No 51
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.70 E-value=7.4e-17 Score=144.05 Aligned_cols=105 Identities=30% Similarity=0.526 Sum_probs=95.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
++||||||++..+..++.+|+..||++ ..+.++.+|++.+.. ..||+||+|+ ||+++|++++++|++.. +.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~--~~~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKI 78 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEECSCGGGCHHHHHHHHHHHC--TTCCE
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHhhC--CCCeE
Confidence 589999999999999999999999994 589999999999987 6799999999 99999999999999864 56777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
|++ .+++.|+++||.||++.++|..+|++++
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 79 IVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 754 6789999999999999999999998764
No 52
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.70 E-value=4.4e-17 Score=148.29 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=101.8
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
++||||||++..+..++.+|+..||.++ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.+||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~i 77 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVET--LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 77 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTT--CCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHh--cCCCEEEEecCCCCCChHHHHHHHHhcC--CCCeE
Confidence 6899999999999999999999999998 89999999999988 7899999999 99999999999999864 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
|++ .+++.|+++||.||++.++|..+|+.++++....
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 854 6789999999999999999999999999775544
No 53
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.69 E-value=1.6e-16 Score=144.95 Aligned_cols=110 Identities=27% Similarity=0.510 Sum_probs=99.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAET--EKPDLIVLDVMLPKLDGIEVCKQLRQQK--LMFPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhh--cCCCEEEEecCCCCCCHHHHHHHHHcCC--CCCCE
Confidence 3589999999999999999999999999999999999999987 6799999999 99999999999999864 56777
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|++ .+++.|+++||.||++.++|..+|+.++++..
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 79 LMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 754 67899999999999999999999999987643
No 54
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.69 E-value=2.2e-16 Score=143.40 Aligned_cols=116 Identities=22% Similarity=0.348 Sum_probs=102.5
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEcc-CCCCCHHHHHHHHHhhc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL-----TNHIDLVLTEV-MPCLSGVALLSKIMSHK 158 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~-----~~~pDLVLlDi-MPgmdGleLlr~IR~~~ 158 (770)
+++||||||++..+..+..+|+..|| .|..+.++.+|++.+... ...|||||+|+ ||+++|+++++.|++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46899999999999999999999998 899999999999999741 14799999999 99999999999999864
Q ss_pred CCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 159 TRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 159 ~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
..+.+|||++ .+++.|+++||.||++.++|..+|++++++....
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 135 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLST 135 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHccc
Confidence 3367888854 6789999999999999999999999999887544
No 55
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.69 E-value=1.3e-16 Score=141.63 Aligned_cols=105 Identities=29% Similarity=0.489 Sum_probs=96.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.||+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 489999999999999999999999999999999999999987 7899999999 99999999999999864 567877
Q ss_pred hh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 167 IF--------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 167 vl--------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
++ .++..|+++||.||++.++|..+|++++
T Consensus 78 ~~s~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 55 5678999999999999999999998764
No 56
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.69 E-value=1.4e-16 Score=164.26 Aligned_cols=112 Identities=31% Similarity=0.535 Sum_probs=103.1
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
...++||||||++.++..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~ 202 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSK--NHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTL 202 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHH--SCCSEEEEEESSCSSCCHHHHHHHHHHH--CCS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CCC
Confidence 356899999999999999999999999999999999999999988 7899999999 99999999999999875 578
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ ++++.|+++||.||++.++|..+|.+++++.+
T Consensus 203 piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 203 PVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp CEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 88855 67899999999999999999999999988754
No 57
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.68 E-value=2.6e-16 Score=144.80 Aligned_cols=118 Identities=23% Similarity=0.357 Sum_probs=103.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEcc-CCCCCHHHHHHH
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLT--------NHIDLVLTEV-MPCLSGVALLSK 153 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~--------~~pDLVLlDi-MPgmdGleLlr~ 153 (770)
..+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..|||||+|+ ||+++|+++++.
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~ 83 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQE 83 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHH
Confidence 3567899999999999999999999998 8999999999999997411 5699999999 999999999999
Q ss_pred HHhhcCCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 154 IMSHKTRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 154 IR~~~~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
|++....+.+|||++ .+++.|+++||.||++.++|..+|++++++....
T Consensus 84 l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 142 (149)
T 1k66_A 84 IKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLDI 142 (149)
T ss_dssp HTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhhh
Confidence 998643367888854 6789999999999999999999999999887543
No 58
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.68 E-value=1.6e-16 Score=145.36 Aligned_cols=112 Identities=21% Similarity=0.380 Sum_probs=100.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKT 159 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLlr~IR~~~~ 159 (770)
.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ || +++|+++++.|+...
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~- 78 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLRE--ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY- 78 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHH--SCEEEEEEETTTTC-----CCHHHHHHHHHHHC-
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHc--CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC-
Confidence 45799999999999999999999999999999999999999988 7899999999 99 999999999999863
Q ss_pred CCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 160 RKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 160 ~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
+.+|||++ .+++.|+++||.||++.++|..+|.+++++...
T Consensus 79 -~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 79 -RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp -TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred -cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 67888854 678999999999999999999999999876443
No 59
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.68 E-value=1.9e-16 Score=140.98 Aligned_cols=107 Identities=26% Similarity=0.424 Sum_probs=97.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..+..+|+..||.+..+.++.+|+..+.. ..||+||+|+ ||+++|+++++.|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQW---SAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--HCCSEEEEESEETTEEHHHHHHHHHTT---CCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhC---CCCcEE
Confidence 589999999999999999999999999999999999999887 6799999999 9999999999999842 567777
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ .+++.|+++||.||++.++|..+|+.++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 54 6789999999999999999999999998764
No 60
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.68 E-value=1.6e-17 Score=152.36 Aligned_cols=109 Identities=20% Similarity=0.170 Sum_probs=98.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G-~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.+++||||||++..+..++.+|+..| |+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 45799999999999999999999999 999999999999999976 7899999999 99999999999999875 478
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|||++ ++++.|+++||.||++.++|..+|+++++.
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 88854 678999999999999999999999987754
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.68 E-value=2.4e-16 Score=144.14 Aligned_cols=113 Identities=22% Similarity=0.347 Sum_probs=102.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~ 162 (770)
.+++||||||++..+..+..+|+..||+|. .+.++.+|++.+.. ..|||||+|+ || +++|+++++.|+.. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~--~~~dlii~d~~~~~~~~g~~~~~~l~~~---~~ 82 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPD--LRPDIALVDIMLCGALDGVETAARLAAG---CN 82 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCCSSSCHHHHHHHHHHH---SC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHh--CCCCEEEEecCCCCCCCHHHHHHHHHhC---CC
Confidence 467999999999999999999999999999 69999999999987 6799999999 98 79999999999986 56
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
+|||++ .+++.|+++||.||++.++|..+|++++++.....
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 133 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLEE 133 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccCC
Confidence 788754 67899999999999999999999999998876554
No 62
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.8e-16 Score=145.60 Aligned_cols=114 Identities=23% Similarity=0.382 Sum_probs=99.7
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHHhhc-
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMSHK- 158 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~---~~~pDLVLlDi-MPgmdGleLlr~IR~~~- 158 (770)
.+++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|+++++.||+..
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457999999999999999999999999 889999999999999752 15699999999 99999999999999843
Q ss_pred -CCCCcchhhh----------hhHhcC-CCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 159 -TRKNLPVIIF----------KCLSKG-AVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 159 -~~~~IPIIvl----------~al~aG-AddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
..+.+|||++ .++..| +++||.||++.++|..+|++++...
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 3467888754 678899 9999999999999999999887643
No 63
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.67 E-value=4.3e-16 Score=145.91 Aligned_cols=112 Identities=18% Similarity=0.423 Sum_probs=101.7
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... +.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~ 80 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKG--TSVQLVISDMRMPEMGGEVFLEQVAKSY--PDI 80 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTT--SCCSEEEEESSCSSSCHHHHHHHHHHHC--TTS
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhC--CCC
Confidence 456899999999999999999999999999999999999999987 7799999999 99999999999999864 578
Q ss_pred chhhh----------hhHhcC-CCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aG-AddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ .++..| +++||.||++.++|..+|..++++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 88855 567787 99999999999999999999987654
No 64
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.67 E-value=6.6e-17 Score=149.83 Aligned_cols=112 Identities=18% Similarity=0.301 Sum_probs=100.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcC-CCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G-~eV~~A~dg~EALe~L~~~~-~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+||||||++..+..|..+|+..| |+|..+.++.+++..+.. . ..|||||+|+ ||+++|+++++.||... +.
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~-~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~ 95 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTD-GLDAFDILMIDGAALDTAELAAIEKLSRLH--PG 95 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHH-HHTTCSEEEEECTTCCHHHHHHHHHHHHHC--TT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHh-cCCCCCEEEEeCCCCCccHHHHHHHHHHhC--CC
Confidence 45799999999999999999999998 999999999999887754 2 4699999999 99999999999999864 67
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
+|||++ .+++.|+++||.||++.++|..+|.+++++..
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 143 (146)
T 4dad_A 96 LTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCA 143 (146)
T ss_dssp CEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTCC
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhhc
Confidence 888855 67899999999999999999999999998653
No 65
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.67 E-value=2.6e-16 Score=154.91 Aligned_cols=109 Identities=22% Similarity=0.418 Sum_probs=100.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 79 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAIS--DGIPI 79 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 4589999999999999999999999999999999999999876 7899999999 99999999999999764 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .+++.|+++||.||++.++|..+|..++++.
T Consensus 80 i~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 80 VFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 855 6789999999999999999999999998764
No 66
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.67 E-value=1.8e-16 Score=144.07 Aligned_cols=109 Identities=26% Similarity=0.473 Sum_probs=97.0
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. .+.+|
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~-~~~~~ 79 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEE--KRPDILLLDIIMPHLDGLAVLERIRAGF-EHQPN 79 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHHC-SSCCE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHhcC-CCCCc
Confidence 68999999999999999999987 89876 89999999999987 6799999999 99999999999999742 35667
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ ++++.|+++||.||++.++|..+|++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 7744 6789999999999999999999999988653
No 67
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.67 E-value=1.9e-16 Score=141.48 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=98.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~~~~~~~I 163 (770)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ || +++|+++++.||+....+.+
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRR--DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHH--HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHh--cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 34689999999999999999999999999999999999999987 6799999999 99 99999999999987445678
Q ss_pred chhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 164 PVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 164 PIIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|||++ .+++.|+++||.||++.++|..+|+++++
T Consensus 82 ~ii~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 82 PIVIIGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp CEEEEECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 88754 56789999999999999999999998875
No 68
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.66 E-value=2.7e-16 Score=144.04 Aligned_cols=111 Identities=23% Similarity=0.468 Sum_probs=94.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCC--C
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTR--K 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~--~ 161 (770)
+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. .. |+||+|+ ||+++|++++++|++.... .
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~-dlvllD~~lp~~~g~~~~~~l~~~~~~~~~ 81 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--EH-KVVFMDVCMPGVENYQIALRIHEKFTKQRH 81 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--TC-SEEEEECCSSTTTTTHHHHHHHHHHC-CCS
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--cC-CEEEEeCCCCCCcHHHHHHHHHHhhhhccC
Confidence 346799999999999999999999999999999999999998865 44 9999999 9999999999999853211 1
Q ss_pred Cc-chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 162 NL-PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~I-PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+ +||++ .+++.|+++||.||++.++|..+|+++++.
T Consensus 82 ~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 82 QRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 23 34433 678999999999999999999999988754
No 69
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.66 E-value=5.6e-16 Score=144.93 Aligned_cols=111 Identities=20% Similarity=0.361 Sum_probs=99.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCC-ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~-pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.+++||||||++..+..+..+|+. ||+|..+.++.+|++.+.. .. |||||+|+ ||+++|+++++.||... +.+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 77 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK--SDPFSVIMVDMRMPGMEGTEVIQKARLIS--PNS 77 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH--SCCCSEEEEESCCSSSCHHHHHHHHHHHC--SSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc--CCCCCEEEEeCCCCCCcHHHHHHHHHhcC--CCc
Confidence 357999999999999999999975 8999999999999999987 54 69999999 99999999999999764 678
Q ss_pred chhhh----------hhHhcC-CCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIF----------KCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl----------~al~aG-AddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
|||++ .++..| +++||.||++.++|..+|..++++...
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 78 VYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 88754 678899 999999999999999999999987543
No 70
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.66 E-value=3.6e-16 Score=145.11 Aligned_cols=109 Identities=23% Similarity=0.443 Sum_probs=93.8
Q ss_pred cEEEEEecChhhHHHHHHHHH--hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 88 LKVLLVENDDSTRHVVAALLR--NCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe--~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
++||||||++..+..+..+|. ..||.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +.+
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~l~~~l~~~~--~~~ 78 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK--HPPNVLLTDVRMPRMDGIELVDNILKLY--PDC 78 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT--SCCSEEEEESCCSSSCHHHHHHHHHHHC--TTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCC
Confidence 589999999999999999997 3688887 99999999999976 7899999999 99999999999999753 678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ .++..|+++||.||++.++|..+|++++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVL 125 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 88855 67889999999999999999999999987654
No 71
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.65 E-value=7.1e-16 Score=153.28 Aligned_cols=110 Identities=25% Similarity=0.420 Sum_probs=101.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~i 77 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALN--EPFDVVILDIMLPVHDGWEILKSMRESG--VNTPV 77 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 4689999999999999999999999999999999999999987 7899999999 99999999999999764 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|++ .++..||++||.||++.++|..+|+.++++..
T Consensus 78 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 78 LMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 855 67889999999999999999999999998753
No 72
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.65 E-value=6.9e-16 Score=154.18 Aligned_cols=111 Identities=31% Similarity=0.504 Sum_probs=101.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~ 81 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATE--NRPDAIVLDINMPVLDGVSVVTALRAMD--NDVP 81 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--SCCSEEEEESSCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 45799999999999999999999999999999999999999987 7899999999 99999999999999764 6788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .+++.||++||.||++.++|..+|+.++++..
T Consensus 82 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 8865 67899999999999999999999999998754
No 73
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.65 E-value=2.9e-16 Score=161.16 Aligned_cols=110 Identities=25% Similarity=0.508 Sum_probs=99.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
|..++||||||++..+..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+. +.+
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~DlvllD~~lp~~~G~~l~~~lr~~---~~~ 109 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARE--DHPDLILLDLGLPDFDGGDVVQRLRKN---SAL 109 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH--SCCSEEEEECCSCHHHHHHHHHHHHTT---CCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHcC---CCC
Confidence 456799999999999999999999999999999999999999988 7899999999 9999999999999973 567
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|||++ ++++.||++||.||++.++|..+|+.++++.
T Consensus 110 ~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 110 PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 88854 7899999999999999999999999988653
No 74
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.65 E-value=6.9e-16 Score=144.19 Aligned_cols=113 Identities=21% Similarity=0.313 Sum_probs=99.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
...+||||||++..+..+..+|+..|+. |..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~--~~~dlii~d~~l~~~~g~~~~~~l~~~~--~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA--HLPDVALLDYRMPGMDGAQVAAAVRSYE--LP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH--HCCSEEEEETTCSSSCHHHHHHHHHHTT--CS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 5679999999999999999999999854 4489999999999988 7799999999 99999999999999864 67
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcC
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSS 202 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~ 202 (770)
+|||++ .+++.|+++||.||++.++|..+|..++++....
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 888854 6789999999999999999999999999875443
No 75
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.65 E-value=6.7e-16 Score=142.30 Aligned_cols=112 Identities=26% Similarity=0.478 Sum_probs=96.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhc---CCCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHK---TRKN 162 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~---~~~~ 162 (770)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. ..+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQN--RQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHH--SCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 3689999999999999999999999999999999999999987 7899999999 99999999999998742 2356
Q ss_pred cchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 163 LPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 163 IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
+|||++ .....|+++||.||++.++|..+|..+++...
T Consensus 88 ~~ii~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 132 (140)
T 3c97_A 88 ASIIAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSEGA 132 (140)
T ss_dssp CCCEEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred eEEEEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCCCC
Confidence 777765 22368999999999999999999999886543
No 76
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.65 E-value=4.6e-16 Score=145.57 Aligned_cols=112 Identities=21% Similarity=0.403 Sum_probs=100.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRN-CGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~-~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
+.+++||||||++..+..+..+|+. .||.++ .+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~--~~~dlii~D~~l~~~~g~~~~~~l~~~~--~ 78 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRE--TTPDIVVMDLTLPGPGGIEATRHIRQWD--G 78 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHT--TCCSEEEECSCCSSSCHHHHHHHHHHHC--T
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhc--CCCCEEEEecCCCCCCHHHHHHHHHHhC--C
Confidence 4568999999999999999999998 799998 89999999999987 7799999999 99999999999999874 5
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
.+|||++ .++..|+++||.||++.++|..+|++++++..
T Consensus 79 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 79 AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 6777754 67899999999999999999999999886543
No 77
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.64 E-value=1.2e-15 Score=140.52 Aligned_cols=114 Identities=21% Similarity=0.435 Sum_probs=98.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
..++||||||++..+..+..+|+.. +|.++ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~ 83 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQH--NKVDAIFLDINIPSLDGVLLAQNISQFA--HK 83 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHH--CCCSEEEECSSCSSSCHHHHHHHHTTST--TC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh--CCCCEEEEecCCCCCCHHHHHHHHHccC--CC
Confidence 4579999999999999999999986 89855 89999999999988 7899999999 99999999999998753 45
Q ss_pred cchhhh--------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhcCC
Q 004184 163 LPVIIF--------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSS 203 (770)
Q Consensus 163 IPIIvl--------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~~s 203 (770)
+|||++ +++..|+++||.||++.++|..+|++++++.+...
T Consensus 84 ~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (143)
T 2qv0_A 84 PFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQN 132 (143)
T ss_dssp CEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 566643 67899999999999999999999999998876544
No 78
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.64 E-value=8.2e-16 Score=144.14 Aligned_cols=110 Identities=25% Similarity=0.491 Sum_probs=100.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~~--~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILALD--PDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHHC--TTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 4689999999999999999999999999999999999999977 7899999999 99999999999999864 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|++ .++..|+++||.||++.++|..+|..++++..
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 854 67889999999999999999999999988754
No 79
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.64 E-value=4e-16 Score=170.58 Aligned_cols=109 Identities=26% Similarity=0.422 Sum_probs=101.3
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIv 167 (770)
+||||||++.++..++.+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+|+|++++++||+.. +.+|||+
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI~ 77 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE--LFFPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVIV 77 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--BCCSEEEEESEETTEETTTHHHHHHHHC--TTCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEEE
Confidence 79999999999999999999999999999999999999988 7899999999 99999999999999875 6788885
Q ss_pred h----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 168 F----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 168 l----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
+ ++++.||++||.||++.++|..+|.+++.+...
T Consensus 78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 121 (368)
T 3dzd_A 78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSK 121 (368)
T ss_dssp EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHSC
T ss_pred EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 5 779999999999999999999999999987643
No 80
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.64 E-value=7.2e-16 Score=141.87 Aligned_cols=111 Identities=24% Similarity=0.375 Sum_probs=99.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII 166 (770)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+||+++|+++++.|++.. +.+|||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~d~~~~~~g~~~~~~l~~~~--~~~pii 79 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRR--EKIDLVFVDVFEGEESLNLIRRIREEF--PDTKVA 79 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTT--SCCSEEEEECTTTHHHHHHHHHHHHHC--TTCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCcHHHHHHHHHHHC--CCCCEE
Confidence 4689999999999999999999999999999999999999987 789999999988899999999999764 578888
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
++ .++..|+++||.||++.++|..+|.+++++...
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 54 678999999999999999999999999876543
No 81
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.64 E-value=4.7e-16 Score=169.50 Aligned_cols=110 Identities=31% Similarity=0.595 Sum_probs=100.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..++||||||++.++..|+.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+.. +.+|
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~--~~~p 79 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFES--EQPDLVICDLRMPQIDGLELIRRIRQTA--SETP 79 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHH--SCCSEEEECCCSSSSCTHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhh--CCCCEEEEcCCCCCCCHHHHHHHHHhhC--CCCc
Confidence 35799999999999999999999999999999999999999988 7899999999 99999999999999863 6788
Q ss_pred hhhh----------hhHhcCCCcEEeCCC-CHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~-~~eeL~~~L~~vlrr~ 199 (770)
||++ ++++.||++||.||+ ..++|..+|.+++++.
T Consensus 80 ii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 80 IIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp EEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 8865 678999999999999 6899999999888764
No 82
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.64 E-value=9.8e-16 Score=150.95 Aligned_cols=109 Identities=31% Similarity=0.511 Sum_probs=98.5
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.++||||||++..+..+..+|+..||.|+ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|+... + .|
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~--~~~dlvi~D~~~p~~~g~~~~~~l~~~~--~-~p 87 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL--HKPDLVIMDVKMPRRDGIDAASEIASKR--I-AP 87 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHTT--C-SC
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCEEEEeCCCCCCChHHHHHHHHhcC--C-CC
Confidence 36899999999999999999999999998 99999999999987 6799999999 99999999999999764 2 37
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
||++ .++..|+++||.||++.++|..+|..++++..
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7744 67899999999999999999999999987653
No 83
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.64 E-value=8e-16 Score=152.42 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=98.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
.+++||||||++..+..+..+|+.. +|.+ ..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES--LDPDLILLDLNMPGMNGLETLDKLREKS--LS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEEETTSTTSCHHHHHHHHHHSC--CC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 3579999999999999999999987 4888 589999999999987 6799999999 99999999999999864 57
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+|||++ .+++.|+++||.||++.++|..+|+.++++.
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 788754 6789999999999999999999999998764
No 84
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.63 E-value=2e-15 Score=136.67 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=96.7
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCC-CceEEEEcc-CCC-CCHHHHHHHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPC-LSGVALLSKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~-~pDLVLlDi-MPg-mdGleLlr~IR~~~~~~ 161 (770)
+.+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. . .|||||+|+ ||+ ++|+++++.|++.. +
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~--~ 78 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKS--GAAIDGVVTDIRFCQPPDGWQVARVAREID--P 78 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHT--TCCCCEEEEESCCSSSSCHHHHHHHHHHHC--T
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHc--CCCCCEEEEeeeCCCCCCHHHHHHHHHhcC--C
Confidence 456899999999999999999999999999999999999999987 5 799999999 997 99999999999864 5
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
.+|||++ .++..| +||.||++.++|..+|+++++....
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 79 NMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp TCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 7888865 233333 6999999999999999999876543
No 85
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.63 E-value=1.1e-15 Score=169.20 Aligned_cols=110 Identities=28% Similarity=0.446 Sum_probs=101.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..|..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~--~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAAR--DLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH--HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 479999999999999999999999999999999999999987 6799999999 9999999999999986545678988
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ ++++.||++||.||++.++|..+|+.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 65 6789999999999999999999999988764
No 86
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.63 E-value=2.2e-15 Score=138.67 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=95.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+.. |.|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|+... +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEE--EWVQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHH--SCEEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhc--CCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 37999999999999999999876 999999999999999987 7799999999 99999999999999764 567777
Q ss_pred hh----------hhHhc-CCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 167 IF----------KCLSK-GAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 167 vl----------~al~a-GAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
++ .++.. |+++||.||++.++|..+|+.++++..
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 54 45655 599999999999999999999987643
No 87
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.61 E-value=1.1e-16 Score=142.87 Aligned_cols=110 Identities=31% Similarity=0.481 Sum_probs=99.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~ 77 (124)
T 1dc7_A 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRH--PMLP 77 (124)
T ss_dssp CCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHHC--TTSC
T ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhhC--CCCC
Confidence 34679999999999999999999999999999999999999976 7899999999 99999999999998764 5678
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .+++.|+++||.||++.++|..+|++++++.
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 78 VIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 8755 5688999999999999999999999998764
No 88
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.61 E-value=2.1e-15 Score=140.94 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=94.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GY-EVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~-eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
..++||||||++..+..|..+|+.. || .|..+.++.+|++.+.. ...|||||+|+ ||+++|+++++.|++.. +.
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~-~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~ 78 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEA-DNTVDLILLDVNLPDAEAIDGLVRLKRFD--PS 78 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHT-TCCCSEEEECC------CHHHHHHHHHHC--TT
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhc-cCCCCEEEEeCCCCCCchHHHHHHHHHhC--CC
Confidence 4579999999999999999999988 88 67799999999999974 25699999999 99999999999999863 67
Q ss_pred cchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 163 LPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 163 IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
+|||++ .++..|+++||.||++.++|..+|.+++++...
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 888854 678999999999999999999999999876544
No 89
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.61 E-value=2.4e-15 Score=139.37 Aligned_cols=101 Identities=21% Similarity=0.402 Sum_probs=84.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCC-CceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTN-HIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~-~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
...+||||||++..+..|+.+|+.. ||.++ .+.++.+|++.+.. . .|||||+|+ ||+++|++++++||....
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~~dlvilD~~l~~~~g~~~~~~lr~~~~-- 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAA--QPNVDLILLDIEMPVMDGMEFLRHAKLKTR-- 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHH--CTTCCEEEECTTSCCCTTCHHHHHHHHHCC--
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhc--CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--
Confidence 4568999999999999999999998 89876 99999999999987 6 799999999 999999999999997652
Q ss_pred Ccchhhh------------hhHhcCCCcEEeCCCCHHHHHHH
Q 004184 162 NLPVIIF------------KCLSKGAVDFLVKPIRKNELKNL 191 (770)
Q Consensus 162 ~IPIIvl------------~al~aGAddyL~KP~~~eeL~~~ 191 (770)
+|||++ ++++.|+++||.||++.++|...
T Consensus 88 -~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~ 128 (145)
T 3kyj_B 88 -AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLE 128 (145)
T ss_dssp -CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC-----
T ss_pred -CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 555533 67899999999999996555444
No 90
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.61 E-value=5.8e-16 Score=140.43 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=96.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+++||||||++..+..++.+|+..++.|..+.++++|++.+.. . |||||+|+ ||+++|+++++.||+.. +.+|
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 76 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHK--SPAS 76 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTT--CCCE
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCC--CCCC
Confidence 45799999999999999999999988899999999999998875 5 99999999 99999999999999864 6778
Q ss_pred hhhh---------------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF---------------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl---------------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .++..|+++||.||++.++|..+|++++...
T Consensus 77 ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 77 LILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 8855 2577899999999999999999999887654
No 91
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.61 E-value=2.8e-15 Score=137.76 Aligned_cols=111 Identities=20% Similarity=0.350 Sum_probs=96.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEcc-CCCCCHHHHHHHHHhhc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDL----TNHIDLVLTEV-MPCLSGVALLSKIMSHK 158 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~----~~~pDLVLlDi-MPgmdGleLlr~IR~~~ 158 (770)
..++||||||++..+..+..+|+..|+ .|..+.++.+|++.+... ...|||||+|+ ||+++|+++++.|++..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999999998 899999999999999741 15699999999 99999999999999764
Q ss_pred CCCCcchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 159 TRKNLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 159 ~~~~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
..+.+|||++ .+++.|+++||.||++.++|..++....
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 3367888854 6788999999999999999999866543
No 92
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.60 E-value=2.4e-15 Score=150.28 Aligned_cols=108 Identities=32% Similarity=0.501 Sum_probs=98.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
+++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvllD~~l~~~~g~~~~~~l~~~---~~~~i 78 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDR--AGADIVLLDLMLPGMSGTDVCKQLRAR---SSVPV 78 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHHH---CSCSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHcC---CCCCE
Confidence 3689999999999999999999999999999999999999987 6799999999 9999999999999985 46788
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .+++.||++||.||++.++|..+|+.++++.
T Consensus 79 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 79 IMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 754 6789999999999999999999999998653
No 93
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.60 E-value=2.4e-15 Score=131.84 Aligned_cols=107 Identities=25% Similarity=0.351 Sum_probs=97.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+ ||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~--~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDL--LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHh--cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 589999999999999999999999999999999999999987 6799999999 9999999999999987544678888
Q ss_pred hh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 167 IF-------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 167 vl-------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
++ .++..|+++||.||++.++|..+|++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 65 5788999999999999999999987654
No 94
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.60 E-value=1.9e-15 Score=152.73 Aligned_cols=107 Identities=25% Similarity=0.507 Sum_probs=98.0
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.++||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. .+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~~~~~lr~~~---~~~i 79 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRE--LRPDLVLLDLMLPGMNGIDVCRVLRADS---GVPI 79 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHH--HCCSEEEEESSCSSSCHHHHHHHHHTTC---CCCE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhCC---CCcE
Confidence 3689999999999999999999999999999999999999987 6799999999 99999999999999752 6788
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|++ .++..||++||.||++.++|..+|+.++++
T Consensus 80 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 80 VMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp EEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 854 678999999999999999999999988754
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.60 E-value=5.5e-15 Score=135.39 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=96.4
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC-Cc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK-NL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~-~I 163 (770)
....+||||||++..+..|..+|+..||+|..+.++.+|++.+.. ..||||| ||+++|+++++.|+.. + .+
T Consensus 16 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi---~~~~~g~~~~~~l~~~---~~~~ 87 (137)
T 2pln_A 16 RGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK---HSSI 87 (137)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHH--SCCSEEE---ECSTTHHHHHHHHHHH---STTS
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHc--CCCCEEE---EcCccHHHHHHHHHhc---CCCc
Confidence 456799999999999999999999999999999999999999988 7899999 8999999999999986 4 68
Q ss_pred chhhh----------hhHhcCCCcEEeCCC-CHHHHHHHHHHHHHHh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPI-RKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~-~~eeL~~~L~~vlrr~ 199 (770)
|||++ .+++.|+++||.||+ +.++|..+|..++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 88854 678999999999999 9999999999887653
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.59 E-value=3.3e-15 Score=164.18 Aligned_cols=108 Identities=28% Similarity=0.493 Sum_probs=99.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +.+|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~--~~~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSE--KHFNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHH--SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 479999999999999999999999999999999999999987 7899999999 99999999999999864 678888
Q ss_pred hh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 167 IF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 167 vl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++ ++++.||++||.||++.++|..+|.++++..
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 55 6789999999999999999999999998754
No 97
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.58 E-value=5.7e-15 Score=140.90 Aligned_cols=109 Identities=28% Similarity=0.419 Sum_probs=91.5
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G-~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
..+++||||||++..+..|+.+|+..+ +.++ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||+.. +
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~--~~~dlvilD~~l~~~~g~~l~~~lr~~~--~ 98 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIE--LKPDVITMDIEMPNLNGIEALKLIMKKA--P 98 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSSCSSSCHHHHHHHHHHHS--C
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhcc--CCCCEEEEeCCCCCCCHHHHHHHHHhcC--C
Confidence 356899999999999999999999874 4444 89999999999987 6799999999 99999999999999875 3
Q ss_pred Ccchhhh------------hhHhcCCCcEEeCCCC---------HHHHHHHHHHHHHH
Q 004184 162 NLPVIIF------------KCLSKGAVDFLVKPIR---------KNELKNLWQHVWRR 198 (770)
Q Consensus 162 ~IPIIvl------------~al~aGAddyL~KP~~---------~eeL~~~L~~vlrr 198 (770)
+|||++ .+++.||++||.||++ .++|..+|++++.+
T Consensus 99 -~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 99 -TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp -CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred -ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 566633 6788999999999999 56666666666543
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.58 E-value=1.7e-15 Score=152.31 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=99.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG-YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G-~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
++||||||++..+..+..+|+..| |.++ .+.++.+|++.+.. ..|||||+|+ ||+++|+++++.|++.. +.+|
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~--~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 77 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPA--ARPDVAVLDVRLPDGNGIELCRDLLSRM--PDLR 77 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHH--HCCSEEEECSEETTEEHHHHHHHHHHHC--TTCE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhh--cCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCc
Confidence 689999999999999999999886 8855 79999999999987 6799999999 99999999999999863 6788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
||++ .+++.|+++||.||++.++|..+|+.++++...
T Consensus 78 ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 124 (225)
T 3c3w_A 78 CLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSL 124 (225)
T ss_dssp EEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCee
Confidence 8865 678999999999999999999999999987543
No 99
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.58 E-value=3.1e-15 Score=159.66 Aligned_cols=110 Identities=24% Similarity=0.372 Sum_probs=98.5
Q ss_pred CcEEEEEecChhhHHHHHHHHH-hCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLR-NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe-~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
..+||||||++.++..|..+|. ..||.|..+.++.+|++.+.. ..|||||+|+ ||+++|+++++.||.....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~--~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQ--IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHH--HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 3579999999999999999997 458999999999999999987 6799999999 99999999999999765456788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||++ .++..|+++||.||++.++|..+|..+++.
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~~ 139 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSRS 139 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHHH
Confidence 8865 678999999999999999999999887653
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.57 E-value=5.8e-15 Score=162.08 Aligned_cols=112 Identities=27% Similarity=0.393 Sum_probs=97.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~-~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.+++||||||++.++..+..+|+. .+|.|..+.++.+|++.+... ..|||||+|+ ||+|||++++++||... +.+
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~--~~~ 78 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSG--KVH 78 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHT--CEE
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCc
Confidence 457999999999999999999998 588999999999999999751 3799999999 99999999999999864 445
Q ss_pred chhhh---------------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF---------------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl---------------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ +++..||++||.||++.++|..+|.+++++..
T Consensus 79 ~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 79 SVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 55532 46788999999999999999999999987754
No 101
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.55 E-value=2.6e-15 Score=150.46 Aligned_cols=111 Identities=8% Similarity=-0.017 Sum_probs=94.4
Q ss_pred CCcEEEEEecChhhHHHHHHHHH-hCCCEEEE-ECCHHHHHHH-HHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR-NCGYEVTE-ATNGLQAWKI-LEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe-~~G~eV~~-A~dg~EALe~-L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
.+++||||||++..+..++.+|+ ..||.|+. +.++.+++.. +.. ..|||||+|+ ||+++|++++++||+. ..+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~-~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHI-SCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHH-HCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHh-hCC
Confidence 45799999999999999999999 46899864 5667776654 555 6799999999 9999999999999972 136
Q ss_pred Ccchhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 162 NLPVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 162 ~IPIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+|||++ .++..||++||.||+++++|..+|+.++++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 7888865 5678999999999999999999999998764
No 102
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.55 E-value=1.3e-14 Score=144.11 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=96.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
+++||||||++..+..+..+|+..| .|..+.++.+|++.+ ..|||||+|+ ||+++|+++++.|++.. +.+||
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~i 74 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETR--PETWV 74 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 3689999999999999999999988 888999999999876 4699999999 99999999999999864 67888
Q ss_pred hhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|++ .++..||++||.||++.++|..+|+.++++.
T Consensus 75 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 75 ILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 854 6789999999999999999999999998864
No 103
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.51 E-value=9.3e-15 Score=142.94 Aligned_cols=107 Identities=14% Similarity=0.226 Sum_probs=93.8
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+..++||||||++..+..+..+|+..||.|+.+.++.+|+ . ..|||||+|+ ||+++|+ +++.++... +.+
T Consensus 10 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~ 80 (196)
T 1qo0_D 10 LRELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGT--PRT 80 (196)
T ss_dssp GGGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSC--TTC
T ss_pred hcCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccC--CCC
Confidence 4567999999999999999999999999999988888776 3 5799999999 9999999 888888653 678
Q ss_pred chhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 164 PVIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 164 PIIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
|||++ .+++.|+++||.||++..+|..+|..++++..
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 81 TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 88855 67899999999999999999999998887643
No 104
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.51 E-value=3e-14 Score=130.60 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=94.5
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
.....+||||||++..+..+..+|+..||.|..+.++.+|++.+... ..|||||+|+ ||+++|+++++.|++. .+.
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~l~~~--~~~ 88 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQL-STCDLLIVSDQLVDLSIFSLLDIVKEQ--TKQ 88 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGG-GSCSEEEEETTCTTSCHHHHHHHHTTS--SSC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCC
Confidence 34667999999999999999999999999999999999999988641 3699999999 9999999999999874 467
Q ss_pred cchhhhh-hHhc-C-----CCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 163 LPVIIFK-CLSK-G-----AVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl~-al~a-G-----AddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+|||++. .... . +++||.||++.++|..+|++++++
T Consensus 89 ~~ii~ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 89 PSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCEEEEECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 8888775 3211 1 789999999999999999887643
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.48 E-value=6.4e-14 Score=139.48 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=94.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIv 167 (770)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||||| ||+++|+++++.|++. ...+|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~dlvi---lp~~~g~~~~~~lr~~--~~~~~ii~ 73 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDI--RNYDLVM---VSDKNALSFVSRIKEK--HSSIVVLV 73 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTT--SCCSEEE---ECCTTHHHHHHHHHHH--CTTSEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhc--CCCCEEE---eCCCCHHHHHHHHHhC--CCCCcEEE
Confidence 479999999999999999999999999999999999999987 7899999 8999999999999986 23788885
Q ss_pred h----------hhHhcCCCcEEeCCC-CHHHHHHHHHHHHHH
Q 004184 168 F----------KCLSKGAVDFLVKPI-RKNELKNLWQHVWRR 198 (770)
Q Consensus 168 l----------~al~aGAddyL~KP~-~~eeL~~~L~~vlrr 198 (770)
+ .++..||++||.||+ +.++|..+|+.++++
T Consensus 74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 5 678999999999999 999999999998765
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.46 E-value=1.8e-13 Score=148.77 Aligned_cols=108 Identities=24% Similarity=0.474 Sum_probs=94.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC-GYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
.+++||||||++..+..|..+|+.. ||++ ..+.++.+|++.+.. ..|||||+|+ ||+++|++++++|++.. +
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~--~~pDlVllDi~mp~~dGlell~~l~~~~--p- 76 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK--FNPDVLTLDVEMPRMDGLDFLEKLMRLR--P- 76 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH--HCCSEEEEECCCSSSCHHHHHHHHHHSS--C-
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhc--cCCCEEEEECCCCCCCHHHHHHHHHhcC--C-
Confidence 4579999999999999999999986 8995 599999999999987 6799999999 99999999999999764 3
Q ss_pred cchhhh------------hhHhcCCCcEEeCCCCH---------HHHHHHHHHHHHH
Q 004184 163 LPVIIF------------KCLSKGAVDFLVKPIRK---------NELKNLWQHVWRR 198 (770)
Q Consensus 163 IPIIvl------------~al~aGAddyL~KP~~~---------eeL~~~L~~vlrr 198 (770)
+|||++ ++++.|+++||.||++. ++|...|+.+++.
T Consensus 77 ~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 77 MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 777754 56889999999999983 7777777777654
No 107
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.42 E-value=2.8e-13 Score=160.89 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=99.3
Q ss_pred cEEEEEecCh-hh-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCC-CceEEEEcc-CCC----CCHHHHHHH
Q 004184 88 LKVLLVENDD-ST-------RHVVAALLRNCGYEVTEATNGLQAWKILEDLTN-HIDLVLTEV-MPC----LSGVALLSK 153 (770)
Q Consensus 88 lrVLIVDDd~-~~-------r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~-~pDLVLlDi-MPg----mdGleLlr~ 153 (770)
|+||||||+. .. ++.|+..|+..||+|..+.++++|+..+.. . .||+||+|+ ||+ ++|++++++
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~--~~~~d~vilDi~lp~~~~~~~G~~ll~~ 78 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSS--NEAIDCLMFSYQMEHPDEHQNVRQLIGK 78 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTT--TCCCSEEEEECCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhc--CCCCcEEEEeCCCCcccccccHHHHHHH
Confidence 4899999999 88 999999999999999999999999999986 5 499999999 999 999999999
Q ss_pred HHhhcCCCCcchhhhh-----------hHhcCCCcEEeCCCCHHH-HHHHHHHHHHHhh
Q 004184 154 IMSHKTRKNLPVIIFK-----------CLSKGAVDFLVKPIRKNE-LKNLWQHVWRRCH 200 (770)
Q Consensus 154 IR~~~~~~~IPIIvl~-----------al~aGAddyL~KP~~~ee-L~~~L~~vlrr~~ 200 (770)
||+.. ..+|||++. .+..||+|||.||++..+ |.++|+.+++|+.
T Consensus 79 iR~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~ 135 (755)
T 2vyc_A 79 LHERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR 135 (755)
T ss_dssp HHHHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence 99874 579999762 367899999999999999 9999999999864
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.34 E-value=6.7e-13 Score=137.37 Aligned_cols=91 Identities=21% Similarity=0.428 Sum_probs=76.0
Q ss_pred cEEEEEecChhhHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRN-CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~-~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
.+||||||++.++..|..+|+. .||.+.. .++.+++..+.. ..|||||+|+ ||+++|++++++||+. .+||
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~----~~pv 77 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER----GLPV 77 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT----TCCE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC----CCCE
Confidence 5899999999999999999976 4787754 455666666554 6899999999 9999999999999864 4788
Q ss_pred hhh----------hhHhcCCCcEEeCCCCH
Q 004184 166 IIF----------KCLSKGAVDFLVKPIRK 185 (770)
Q Consensus 166 Ivl----------~al~aGAddyL~KP~~~ 185 (770)
|++ +++++||++||.||+..
T Consensus 78 i~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 78 VILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 855 67999999999999744
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.69 E-value=8.8e-08 Score=105.88 Aligned_cols=110 Identities=24% Similarity=0.315 Sum_probs=92.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IP 164 (770)
...+||+|||+...+..+...|.. .+.+....++.+++. +.. ..||+||+|+ ||+|+|+++++.||.......+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~p 226 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLP 226 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCC
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCc
Confidence 346899999999998888888865 477888889888863 344 6799999999 99999999999999876566788
Q ss_pred hhhh----------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 165 VIIF----------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 165 IIvl----------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
||++ .++..|+++|+.||+...+|...+..++++.
T Consensus 227 ii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 227 VLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 8854 5899999999999999999999998877654
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.65 E-value=4e-09 Score=104.91 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=69.9
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhh--------hhhHhcCCCcEEeCC
Q 004184 112 YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVII--------FKCLSKGAVDFLVKP 182 (770)
Q Consensus 112 ~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIv--------l~al~aGAddyL~KP 182 (770)
+.|..+.++.+|++.+.. ..|||||+|+ ||+++|++++++||+......+|+|+ .++++.|+++||.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~--~~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKE--LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHH--HCCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 445568899999999987 6799999999 99999999999999865445577764 278899999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 004184 183 --IRKNELKNLWQHVWR 197 (770)
Q Consensus 183 --~~~eeL~~~L~~vlr 197 (770)
++..+|...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788887777664
No 111
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=96.91 E-value=0.00069 Score=69.26 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
+.+.+||||||++..+..|..+|+.+|++|..+.+. . ...||+||+|+ +|...+... .++-......
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~-------~--~~~~~~ii~d~~~~~~~~~~~--~i~~~~~~~~- 76 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ-------E--PTPEDVLITDEVVSKKWQGRA--VVTFCRRHIG- 76 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC-------C--CCTTCEEEEESSCSCCCCSSE--EEEECSSCCC-
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC-------C--CCcCcEEEEcCCCccccccce--EEEEecccCC-
Confidence 467899999999999999999999999999887641 1 26799999999 987544211 0000000000
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
.....+...++.||+...+|...+.+++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 77 -----IPLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp -----SCCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred -----CcccccCCceeccccchHHHHHHHHHHh
Confidence 0113345678999999988888877765
No 112
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.21 E-value=0.0081 Score=71.16 Aligned_cols=95 Identities=14% Similarity=0.199 Sum_probs=73.3
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhh--------
Q 004184 100 RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKC-------- 170 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~a-------- 170 (770)
...|...|+..||+|+.+.+.++|+..++. ...+++||+|+ ++ +.+++++||+.. ..+||+++..
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~-~~~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHH-CTTEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHh-CCCceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 345568888899999999999999999987 35699999999 86 789999999875 7899997611
Q ss_pred H--hcCCCcEEeCCCC-HHHHHHHHHHHHHHhh
Q 004184 171 L--SKGAVDFLVKPIR-KNELKNLWQHVWRRCH 200 (770)
Q Consensus 171 l--~aGAddyL~KP~~-~eeL~~~L~~vlrr~~ 200 (770)
+ ..++++|+.+... .+.+...|.+.++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 125 (715)
T 3n75_A 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEYI 125 (715)
T ss_dssp GTTSCCEEEEECCCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCeEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 1 2367888888764 5555566766666653
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.03 E-value=0.013 Score=52.77 Aligned_cols=95 Identities=26% Similarity=0.262 Sum_probs=70.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..||+|..|-...-.+++++....|++++.....+ ...-|+|++++ +|. .|.........-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 46999999999999999999777899987653221 24579999998 675 2333222222223
Q ss_pred h----------hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 I----------IFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 I----------vl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
| +++.+..||. ||..|+++.-|.++|+..++..
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 3 3377899999 9999999999999999999863
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.57 E-value=0.092 Score=50.73 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=80.4
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHh
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR~ 156 (770)
..+|||. |-++.-..++..+|+..||+|+. ....++.++.+.+ ..+|+|.+-. +.. +. -.++++.|++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~--~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ--EDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH--TTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4578877 78888888999999999999983 4578888999988 8899999988 642 22 3457777877
Q ss_pred hcCCCCcchhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 157 HKTRKNLPVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 157 ~~~~~~IPIIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
... .+++|++- .+.+.|++.++..--...+....+..++...
T Consensus 96 ~g~-~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 96 LGA-DDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp TTC-TTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCC-CCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 542 35776631 2457899986665556677777777777654
No 115
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=93.11 E-value=0.024 Score=63.98 Aligned_cols=165 Identities=8% Similarity=-0.100 Sum_probs=84.3
Q ss_pred cchhhHHHHHHHHhCCc-cccCCccCccccccc-cceeeeccccCCCCCCCCCccchhhhcccCCCcEE--EEEecChhh
Q 004184 24 RDENAVVGEQQHLVGDD-RLNDSSIAEDVKDGC-EGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKV--LLVENDDST 99 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~-i~v~S~ig~~S~~G~-g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrV--LIVDDd~~~ 99 (770)
....+|++.++++|||. +.+.+..+. |. +++|+++++.............. .......+.+| .+.++....
T Consensus 110 GLGL~iv~~l~~~~gG~~i~v~S~~~~----g~~~~~~~Lpl~~~~~~g~~~~~~~~-~~~~~~~GT~V~v~l~~~~~e~ 184 (471)
T 1mu5_A 110 GLGVKAAVLYSQMHQDKPIEIETSPVN----SKRIYTFKLKIDINKNEPIIVERGSV-ENTRGFHGTSVAISIPGDWPKA 184 (471)
T ss_dssp TTTHHHHHHHHHHHCCCCEEEEEECTT----CSEEEEEEEEECTTTCCEEEEEEEEE-ECCTTCCEEEEEEEEECCHHHH
T ss_pred eeeHHHHHHHHHHhCCCceeEEEecCC----CceEEEEEEeccccccCCcccccccc-cCCCCCCCEEEEEEEcCCcchH
Confidence 34478999999999999 988777665 33 66666666543111100000000 00011123333 333332322
Q ss_pred HHHHHHHHHh-----CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc-chh-hh---
Q 004184 100 RHVVAALLRN-----CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL-PVI-IF--- 168 (770)
Q Consensus 100 r~~L~~lLe~-----~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I-PII-vl--- 168 (770)
...+..+|+. -++.+....++.+++.+.+.....|++ .+. ||.++|+++...++-....... .+. ++
T Consensus 185 ~~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~ 262 (471)
T 1mu5_A 185 KSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNE 262 (471)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTS
T ss_pred HHHHHHHHHHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHHHHHhcCCCcchHHhhhcc
Confidence 2344444432 367888777766555443321122222 466 8999998887777644322222 332 11
Q ss_pred -------h----hHhcCCCcEE-eCCCCHHHHHHHHHHH
Q 004184 169 -------K----CLSKGAVDFL-VKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 -------~----al~aGAddyL-~KP~~~eeL~~~L~~v 195 (770)
. +-.+|.+.++ .|.++.+++..+++.+
T Consensus 263 f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (471)
T 1mu5_A 263 FQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETF 301 (471)
T ss_dssp SSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHH
Confidence 1 1224665554 3566677766555443
No 116
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=92.79 E-value=0.051 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhcccC.....
Q 004184 712 FADREAAVTKYRQKKTERC..... 730 (770)
Q Consensus 712 ~~~r~~~~~r~~~kr~~r~..... 730 (770)
+..|.+.|.||-||||.|.
T Consensus 3 p~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 3 PIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred chhHHHHHHHHHHHhhccC.....
Confidence 4579999999999999984
No 117
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.70 E-value=0.55 Score=43.94 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=71.4
Q ss_pred ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHhhcCCCCcchhh
Q 004184 94 ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMSHKTRKNLPVII 167 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR~~~~~~~IPIIv 167 (770)
|-+..-..++..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. +.. +. -.++++.|++... .+++|++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~-~~i~v~v 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIE--TKADAILVSSLYGQGEIDCKGLRQKCDEAGL-EGILLYV 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHH--HTCSEEEEEECSSTHHHHHTTHHHHHHHTTC-TTCEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh--cCCCEEEEEecCcCcHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 4555667788899999999998 56789999999988 7899999988 632 22 2356778877642 3566652
Q ss_pred h---------------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 168 F---------------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 168 l---------------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
- .+.+.|++.|+.---+..++...|...+
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 1 1678899888876666777666665443
No 118
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=90.81 E-value=0.66 Score=53.93 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=80.0
Q ss_pred CCcEEEEE----ecChhhHHHH----HHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CCC----CCHH-
Q 004184 86 RSLKVLLV----ENDDSTRHVV----AALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MPC----LSGV- 148 (770)
Q Consensus 86 ~~lrVLIV----DDd~~~r~~L----~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MPg----mdGl- 148 (770)
...+|||. |-+..-..++ ..+|+..||+|+ .....++.++.+.+ ..+|+|.+-. |.. +..+
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~E--edADVVGLSsLLTt~dihL~~Mk 678 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIE--LKADAILASTIISHDDIHYKNMK 678 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCGGGHHHHHHH
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccCchhhHHHHH
Confidence 45688887 4444443323 578999999998 33478999999988 8899999998 764 3443
Q ss_pred HHHHHHHhhcCCCCcchhh----h---hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 149 ALLSKIMSHKTRKNLPVII----F---KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 149 eLlr~IR~~~~~~~IPIIv----l---~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
++++.|++......++||+ + -+.+.||+.|..-.....++...|...++..
T Consensus 679 evIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 679 RIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 5778888776544577762 1 4568899999888888877777776666543
No 119
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=89.36 E-value=0.091 Score=34.69 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhcccCCCC
Q 004184 715 REAAVTKYRQKKTERCFRK 733 (770)
Q Consensus 715 r~~~~~r~~~kr~~r~~~k 733 (770)
|.+.|.||-||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 5789999999999987655
No 120
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=87.35 E-value=1.3 Score=46.29 Aligned_cols=110 Identities=7% Similarity=0.018 Sum_probs=78.0
Q ss_pred CcEEEEE----ecChhhHHHHHHH--------HHhC-CCEEEE---ECCHHHHHHHHHhcCCCceEEEEcc-CCC----C
Q 004184 87 SLKVLLV----ENDDSTRHVVAAL--------LRNC-GYEVTE---ATNGLQAWKILEDLTNHIDLVLTEV-MPC----L 145 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~l--------Le~~-G~eV~~---A~dg~EALe~L~~~~~~pDLVLlDi-MPg----m 145 (770)
..+||+. |-+..=..++..+ |+.. ||+|+. .-..++.++.+.+ ..+|+|.+-. |.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e--~~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVE--LEADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHH--TTCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeecCCccchH
Confidence 4567665 6666667777777 9999 999973 4468888888888 8899999998 753 3
Q ss_pred CH-HHHHHHHHhhcCCCCcchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 146 SG-VALLSKIMSHKTRKNLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 146 dG-leLlr~IR~~~~~~~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.. .++++.|++.....+++||+= -+.+.|++.|..--....++...|...+..
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 33 246777776554344776621 456789998887777777777776665544
No 121
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=86.68 E-value=0.84 Score=45.32 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=65.5
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHh
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEAT---NGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A~---dg~EALe~L~~~~~~pDLVLlDi-MP-gmdG-leLlr~IR~ 156 (770)
..+||+. |-+..-..++..+|+..||+|+... ..++.++.+.+ ..||+|.+-. +. .+.. .++++.||+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~--~~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKK--YQPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHH--HCCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478887 7777888899999999999998433 56777788877 6899999988 64 3333 457788887
Q ss_pred hcCCCCcchhhh-------hhHhcCCCcEEe
Q 004184 157 HKTRKNLPVIIF-------KCLSKGAVDFLV 180 (770)
Q Consensus 157 ~~~~~~IPIIvl-------~al~aGAddyL~ 180 (770)
....+++||++- -+...|++.|..
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~~~~gad~~~~ 196 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFADEIGADGYAP 196 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHHHHHTCSEECS
T ss_pred cCCCCCCeEEEECCCCCHHHHHHcCCeEEEC
Confidence 643356787732 234568776653
No 122
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=86.52 E-value=0.53 Score=47.49 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEE--cc-C-CCCCH-HHHHHHH
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLT--EV-M-PCLSG-VALLSKI 154 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLl--Di-M-PgmdG-leLlr~I 154 (770)
..+|||. |-+..=..++..+|+..||+|+.. -..++.++.+.+ ..+|+|.+ -. | +.+.. -++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~--~~~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAK--HKGEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHH--TTTSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHH--cCCCEEEEEchhcccCcHHHHHHHHHHH
Confidence 3477777 677788889999999999999843 467888888888 88999999 77 6 33443 4578888
Q ss_pred HhhcCCCCcchhhh-------hhHhcCCCcEEe
Q 004184 155 MSHKTRKNLPVIIF-------KCLSKGAVDFLV 180 (770)
Q Consensus 155 R~~~~~~~IPIIvl-------~al~aGAddyL~ 180 (770)
++.....++||++- -+...|||.|-.
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~a~~iGad~~~~ 202 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKWIEEIGADATAE 202 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHHHHHHTCCBCCS
T ss_pred HHcCCCCCCEEEEECCCCCHHHHHHhCCeEEEC
Confidence 87653346777732 345668887754
No 123
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=84.44 E-value=0.76 Score=44.78 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEcc--CCCCCHH--HHHHHHHhhcCCCCcchhhh----------hhHhcCCCcEE----
Q 004184 118 TNGLQAWKILEDLTNHIDLVLTEV--MPCLSGV--ALLSKIMSHKTRKNLPVIIF----------KCLSKGAVDFL---- 179 (770)
Q Consensus 118 ~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGl--eLlr~IR~~~~~~~IPIIvl----------~al~aGAddyL---- 179 (770)
.+..+.++.+... ...+++++++ ++.++|+ +++++++.. ..+|||++ ++++.|+++++
T Consensus 130 ~~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a 205 (237)
T 3cwo_X 130 ILLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASV 205 (237)
T ss_dssp EEHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHH
T ss_pred cCHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHH
Confidence 3556666666541 3456888885 5666665 455665543 47899843 67889999984
Q ss_pred --eCCCCHHHHHHHHH
Q 004184 180 --VKPIRKNELKNLWQ 193 (770)
Q Consensus 180 --~KP~~~eeL~~~L~ 193 (770)
.+|+.+.++...+.
T Consensus 206 ~~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 206 FHFREIDVRELKEYLK 221 (237)
T ss_dssp HHTTSSCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 78999999877653
No 124
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=84.35 E-value=4.4 Score=41.68 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=71.4
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCH-HHHHHHHHh
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVT---EATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSG-VALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~---~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdG-leLlr~IR~ 156 (770)
..+||++ |-+..-..++..+|+..||+|+ .-...++.++.+.+ ..+|+|.+-. |. .+.. .++++.|++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~--~~~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQK--EKPIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHH--HCCSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4577777 6777888899999999999986 34577888888887 7899999988 64 4444 457888887
Q ss_pred hcCCCCcchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHH
Q 004184 157 HKTRKNLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 157 ~~~~~~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vl 196 (770)
.. ..+||++- -+-..|++.|..-. .+....+..++
T Consensus 201 ~~--~~~~v~vGG~~~~~~~~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NG--IKIPFACGGGAVNQDFVSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TT--CCCCEEEESTTCCHHHHHTSTTEEECSST---THHHHHHHHHH
T ss_pred cC--CCCcEEEECccCCHHHHHHcCCeEEECCH---HHHHHHHHHHH
Confidence 54 34777632 22356876665433 44445555554
No 125
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=83.90 E-value=0.64 Score=44.70 Aligned_cols=35 Identities=11% Similarity=-0.112 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
-..+|++++++.+||.+.+.+..+. |++|++.+|.
T Consensus 182 lGL~i~~~i~~~~gG~i~i~s~~~~------Gt~v~~~~P~ 216 (222)
T 3jz3_A 182 LGLSIVQRIAKLHGMNVEFGNAEQG------GFEAKVSWLE 216 (222)
T ss_dssp CTHHHHHHHHHHTTCEEECCBCTTS------SBEEEEECCC
T ss_pred ccHHHHHHHHHHcCCEEEEEcCCCC------cEEEEEeecC
Confidence 3489999999999999988776654 4455555543
No 126
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=83.14 E-value=5.6 Score=47.38 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCcEEEEE----ecChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHH
Q 004184 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR 155 (770)
...+|||. |-+..-..++..+|+..||+|+.- .+.++.++.+.+ ..+|+|.+-. |.. +. ..++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVD--ADVHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHHHHHHHHHHHHHHH
Confidence 44677776 456666678888999999999843 467899999888 7899999987 643 22 356788888
Q ss_pred hhcCCCCcchhhh---------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 156 SHKTRKNLPVIIF---------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 156 ~~~~~~~IPIIvl---------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
+... .+++||+= .+.+.|++.|+..--+..++...+..++....
T Consensus 681 ~~G~-~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~~ 733 (762)
T 2xij_A 681 SLGR-PDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKCL 733 (762)
T ss_dssp HTTC-TTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCC-CCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHHh
Confidence 7653 35666621 34789999999866688888888887776543
No 127
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=80.50 E-value=5.4 Score=47.24 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=79.5
Q ss_pred CCcEEEEE----ecChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHH
Q 004184 86 RSLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR 155 (770)
...+|||. |-+..-..++..+|+..||+|+.- ...++.++.+.+ ..+|+|.+-. |.. +. ..++++.|+
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e--~~adiVglSsl~~~~~~~~~~vi~~L~ 672 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVE--ADVHVVGVSSLAGGHLTLVPALRKELD 672 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHH--TTCSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH--cCCCEEEEeeecHhHHHHHHHHHHHHH
Confidence 44677776 566666778888999999999843 367899999888 7899999987 642 22 356888888
Q ss_pred hhcCCCCcchhh----h-----hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 156 SHKTRKNLPVII----F-----KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 156 ~~~~~~~IPIIv----l-----~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
+... .+++||+ . .+.+.|++.|+.--....++...|...++.
T Consensus 673 ~~G~-~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 673 KLGR-PDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HTTC-TTSEEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hcCC-CCCEEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 7653 3566662 1 347889999998667777777777666643
No 128
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=79.88 E-value=0.2 Score=54.46 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccCCCCC-----------CCCCcc-----chhhhcccCCC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQMPQE-----------QPQGAM-----VCWERFLHLRS 87 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~~~~~-----------~~~~~~-----~~~~~~~~~~~ 87 (770)
.-...|++++++.|||.+.+.+..|. |+.|++++|+....... .|.... ...........
T Consensus 212 GlGL~iv~~~v~~~gG~i~v~s~~g~----Gt~f~i~lPl~~~~~~~l~v~vg~~~~aiP~~~V~e~~~~~~~~i~~~~~ 287 (379)
T 1b3q_A 212 GVGMDVVKNVVESLNGSMGIESEKDK----GTKVTIRLPLTLAIICALLVKVNNLVYAIPIANIDTILSISKEDIQRVQD 287 (379)
T ss_dssp CCCSHHHHHHHHHTTCEEEEEEETTT----EEEEEEEEESSCEEEEEEEEEETTEEEEEEGGGEEEEECCBSTTCEEETT
T ss_pred cccHHHHHHHHHHCCCEEEEEEcCCC----CeEEEeccCCccccceEEEEEECCEEEccchheeeEEEeeCHHHeEEeCC
Confidence 34488999999999999999777665 44444444433221000 000000 00000112245
Q ss_pred cEEEEEecChhhHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRN 109 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~ 109 (770)
..||+++|+......|..+|..
T Consensus 288 ~~vl~vrg~~vpl~~L~~lL~~ 309 (379)
T 1b3q_A 288 RDVIVIRGEVIPVYRLWEVLQI 309 (379)
T ss_dssp EEEEEETTEEEEEEEHHHHTTC
T ss_pred ccEEEECCcEEeEEEHHHHhCC
Confidence 6899999999988888888864
No 129
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=78.47 E-value=8 Score=40.39 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CC-----CCCHHHHHHHHHhhcCCCCcchh---------
Q 004184 104 AALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MP-----CLSGVALLSKIMSHKTRKNLPVI--------- 166 (770)
Q Consensus 104 ~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MP-----gmdGleLlr~IR~~~~~~~IPII--------- 166 (770)
.+.|.+.||.|+ ++.+...|.++. + ..+++| +.+ .| +..-+++++.|++. .++|||
T Consensus 128 a~~L~~~Gf~Vlpy~~dd~~~akrl~-~--~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI~TPs 200 (265)
T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLA-E--IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGVGTAS 200 (265)
T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHH-H--SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHH
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHH-H--hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCCCCHH
Confidence 444556799987 556666665544 4 457776 565 54 22347899999874 578988
Q ss_pred -hhhhHhcCCCcEEe-----CCCCHHHHHHHHHHHHH
Q 004184 167 -IFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 -vl~al~aGAddyL~-----KP~~~eeL~~~L~~vlr 197 (770)
+..++++|++++|+ |--++..+...+...+.
T Consensus 201 DAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 201 DAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 34889999999864 44456666666665554
No 130
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=77.34 E-value=0.89 Score=52.02 Aligned_cols=167 Identities=10% Similarity=-0.074 Sum_probs=82.8
Q ss_pred chhhHHHHHHHHhCCc-cccCCccCccccccc-cceeeeccccCCCCCCCCCccchhhhcccCCCcEEEEE-ecChhhH-
Q 004184 25 DENAVVGEQQHLVGDD-RLNDSSIAEDVKDGC-EGAVTASAVLQMPQEQPQGAMVCWERFLHLRSLKVLLV-ENDDSTR- 100 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~-i~v~S~ig~~S~~G~-g~~ftv~lp~~~~~~~~~~~~~~~~~~~~~~~lrVLIV-DDd~~~r- 100 (770)
...+|++.++++|||. +.+.+..+. |. +++|+++++........... ..........+.+|.|. .++....
T Consensus 110 LGLsiv~~l~~~~gG~~I~V~S~~~~----g~~~~~~~Lpl~~~~~~g~~~~~-~~~~~~~~~~GT~V~v~l~~~~~e~~ 184 (530)
T 2zbk_B 110 LGVKAAVLYSQMHQDKPIEIETSPVN----SKRIYTFKLKIDINKNEPIIVER-GSVENTRGFHGTSVAISIPGDWPKAK 184 (530)
T ss_dssp SHHHHHHHHHHHHCCCCEEEEEECTT----CSEEEEEEEEEETTTTEEEEEEE-EEEECCSSCCEEEEEEEEECCHHHHH
T ss_pred chHHHHHHHHHHhCCCceEEEEecCC----CeEEEEEEEEecccccCCccccc-cccCCCCCCCCcEEEEEeccchhhHH
Confidence 4488999999999999 988777664 33 56666666542111100000 00000001234444443 3443322
Q ss_pred HHHHHHHHh-----CCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC-Ccchhhh-----
Q 004184 101 HVVAALLRN-----CGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK-NLPVIIF----- 168 (770)
Q Consensus 101 ~~L~~lLe~-----~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~-~IPIIvl----- 168 (770)
..+..+|+. -++.+....++.+.+.+......-++ ..+. +|...|+++...++...... .+.|.-+
T Consensus 185 ~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~~~lp~--~~~~~~~~~~Gi~~~~~l~~~~~~~~~~~l~~fl~~~f 262 (530)
T 2zbk_B 185 SRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPK--PPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEF 262 (530)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECTTSCEEEECCCCCCCCC--CCCCCCCCGGGCCHHHHHHHHTTCSSCCBHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCeEEEecCccccccC--CcceeccCCCChhHHHHHHHHhccCCCceeHhhhcCcc
Confidence 445555443 25666666554332221111000011 1234 67777877665555322122 2233311
Q ss_pred --------hhH--hcCCCcEE-eCCCCHHHHHHHHHHHHHH
Q 004184 169 --------KCL--SKGAVDFL-VKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 169 --------~al--~aGAddyL-~KP~~~eeL~~~L~~vlrr 198 (770)
..+ .+|.+... .|.++.+++...+..+..-
T Consensus 263 t~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 263 QSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp TTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 111 23555555 5788999999998887754
No 131
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=74.37 E-value=0.75 Score=45.89 Aligned_cols=37 Identities=14% Similarity=-0.013 Sum_probs=27.0
Q ss_pred ccchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 23 ~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
..-..+||+++++++||.+.+.+..+. |++|++.+|.
T Consensus 211 ~GLGL~i~~~iv~~~gG~i~v~s~~~~------Gt~f~i~lP~ 247 (258)
T 2c2a_A 211 TGLGLAITKEIVELHGGRIWVESEVGK------GSRFFVWIPK 247 (258)
T ss_dssp CCCTHHHHHHHHHHTTCEEEEEEETTT------EEEEEEEEEC
T ss_pred cchHHHHHHHHHHHcCCEEEEEecCCC------CcEEEEEeeC
Confidence 344588999999999999988776554 4455555554
No 132
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=73.38 E-value=2 Score=44.72 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.8
Q ss_pred CcEEEEEecC--hhhHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVEND--DSTRHVVAALLRNCGYEVTEATNGLQ--AWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd--~~~r~~L~~lLe~~G~eV~~A~dg~E--ALe~L~~~~~~pDLVLlDi 141 (770)
+.+||||+++ +.....|..+|+..||+|.......- -.+.|. .||+||++-
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d 58 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSD 58 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEES
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcC
Confidence 3589999988 66788899999999999987654321 123444 499998874
No 133
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=73.01 E-value=5.4 Score=42.90 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNC---GYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~---G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~ 161 (770)
..+++.|+|.|....+.|..+|... .|+|..+++.+.+.+.+++ ..+||+|+|- +.... ..+. .
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~--~~~dilli~e~~~~~~-----~~~~-----~ 87 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKE--YRIDVLIAEEDFNIDK-----SEFK-----R 87 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHH--HTCSEEEEETTCCCCG-----GGGC-----S
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhc--CCCCEEEEcchhhhhh-----hhhc-----c
Confidence 4578999999999999999999743 6899999999999999987 7899999998 65421 1111 1
Q ss_pred Ccchhhh--hh-Hhc-CCCcEEeCCCCHHHHHHHHHHHH
Q 004184 162 NLPVIIF--KC-LSK-GAVDFLVKPIRKNELKNLWQHVW 196 (770)
Q Consensus 162 ~IPIIvl--~a-l~a-GAddyL~KP~~~eeL~~~L~~vl 196 (770)
...++++ .. ... .-...+.|--..++|...|..++
T Consensus 88 ~~~v~~l~~~~~~~~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 88 NCGLAYFTGTPGIELIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp SCEEEEEESCTTCCEETTEEEEETTSCHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCcCCCCceeeccCCHHHHHHHHHHHH
Confidence 2233322 11 111 11236788888888877666655
No 134
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=71.06 E-value=25 Score=32.84 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=70.5
Q ss_pred CcEEEEEecCh-hhHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004184 87 SLKVLLVENDD-STRHVVAALLRNCGYEVTE-A--TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 87 ~lrVLIVDDd~-~~r~~L~~lLe~~G~eV~~-A--~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~ 162 (770)
.++++|+.+.+ .....+..+++..+ .|.. . -+.++..+++.. .|++|+-...+.-|+.+++.+. ..
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~e~~~~~~~Ea~a-----~G 139 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYFEPFGLVALEAMC-----LG 139 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSCCSSCHHHHHHHH-----TT
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCCCCccHHHHHHHH-----CC
Confidence 46788887644 25677888888877 5554 3 345577777754 6888875532334677777775 35
Q ss_pred cchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 163 LPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 163 IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+|||+. ..+ .|..+|+..|-+.++|..+|..++.
T Consensus 140 ~PvI~~~~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 140 AIPIASAVGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp CEEEEESCHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeCCCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 688844 334 6788999999999999999999886
No 135
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=68.81 E-value=13 Score=37.61 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCcchh--
Q 004184 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVI-- 166 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M-----PgmdGleLlr~IR~~~~~~~IPII-- 166 (770)
+.....+...+++.|..+. .+.+.++|..... ..+|+|.+-. + +...+++++++|++. .+|||
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~ipvIA~ 187 (229)
T 3q58_A 115 PVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GCRVIAE 187 (229)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TCCEEEE
T ss_pred hHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CCCEEEE
Confidence 4445555566677788776 7788888887765 4588886422 1 234568899998753 68988
Q ss_pred --------hhhhHhcCCCcEEeC
Q 004184 167 --------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 167 --------vl~al~aGAddyL~K 181 (770)
+.+++..||++++.=
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 188 GRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 337788999998753
No 136
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=67.95 E-value=2.7 Score=40.93 Aligned_cols=38 Identities=16% Similarity=-0.076 Sum_probs=26.9
Q ss_pred ccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 23 ~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
..-..+|++.+++.+||.+.+.+..+ .|++|++.+|..
T Consensus 188 ~GlGL~i~~~i~~~~gG~i~~~~~~~------~G~~~~i~lP~~ 225 (244)
T 3d36_A 188 TGLGMMVVYRIIESMNGTIRIESEIH------KGTTVSIYLPLA 225 (244)
T ss_dssp CSCHHHHHHHHHHHTTCEEEEEEETT------TEEEEEEEEECC
T ss_pred cchhHHHHHHHHHHcCCEEEEEecCC------CcEEEEEEecCC
Confidence 34458899999999999998866544 445555555544
No 137
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=67.93 E-value=2.2 Score=42.47 Aligned_cols=37 Identities=16% Similarity=-0.080 Sum_probs=26.7
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
.-...|++++++.+||.+.+.+..+ .|++|++.+|..
T Consensus 220 GlGL~i~~~~~~~~gG~i~i~s~~~------~Gt~~~i~lP~~ 256 (268)
T 4ew8_A 220 GLGLALVKALVELHGGWVALESEPG------NGSTFTCHLPET 256 (268)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEECTT------SCEEEEEEEECC
T ss_pred cccHHHHHHHHHHcCCEEEEEecCC------CCEEEEEEecCC
Confidence 3448999999999999998866554 455555555544
No 138
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=67.64 E-value=1.4 Score=47.41 Aligned_cols=39 Identities=8% Similarity=-0.214 Sum_probs=28.5
Q ss_pred CccchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 22 ~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
+..-..+|++.+++.+||.+.+.+..|. |+.|++.+|..
T Consensus 335 G~GLGL~i~r~i~~~~gG~i~v~s~~g~------Gt~f~i~LP~~ 373 (388)
T 1gkz_A 335 GFGFGLPTSRAYAEYLGGSLQLQSLQGI------GTDVYLRLRHI 373 (388)
T ss_dssp CSSCHHHHHHHHHHHTTCEEEEEEETTT------EEEEEEEEECS
T ss_pred CccCCHHHHHHHHHHhCCEEEEEecCCC------cEEEEEEecCC
Confidence 4455689999999999999998776554 45555555544
No 139
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=67.59 E-value=32 Score=35.99 Aligned_cols=113 Identities=9% Similarity=0.058 Sum_probs=80.1
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcch
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPI 165 (770)
..+.|-++-.++.....+..+|...-|.++.+.+.++.++.+++....+|++|+.. .+..-..++..|.+.. --+|+
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~-~~~~~~~~~~~L~~~g--~lLP~ 84 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVA-ANPSFRAVVQQLCFEG--VVVPA 84 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEET-TSTTHHHHHHHHHHTT--CCCCE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEe-CCCccHHHHHHHHHcC--ccccE
Confidence 34678888889999999999998888999999999999999987677899998875 1234667888888765 45677
Q ss_pred hhhhhH--hcC----------CCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 166 IIFKCL--SKG----------AVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 166 Ivl~al--~aG----------AddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
|++..- ..+ ..+.-...-..+.|...|.+++.++-.
T Consensus 85 vil~~~~~~~~~~~~~~~~yh~aEv~l~~~ql~~l~~~Id~AI~~Fl~ 132 (289)
T 1r8j_A 85 IVVGDRDSEDPDEPAKEQLYHSAELHLGIHQLEQLPYQVDAALAEFLR 132 (289)
T ss_dssp EEESCCC------CCSSCSSBTTCEEECTTCGGGHHHHHHHHHHHHHH
T ss_pred EEeccCccccCCCCccceeccHHHHcCCHhHHHHHHHHHHHHHHHHHc
Confidence 765221 111 112223334557777777777776543
No 140
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.92 E-value=50 Score=29.32 Aligned_cols=108 Identities=12% Similarity=0.203 Sum_probs=62.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-HHHHHHHHhhcCCCCcch
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-VALLSKIMSHKTRKNLPV 165 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-leLlr~IR~~~~~~~IPI 165 (770)
+-|++..-+...+..++.+++..||.|.++.+..+.-+.+++.-..|..-|+-+ ..+..- -..++.++... ..+.|
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslg--aqvli 80 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLG--AQVLI 80 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHC--CCCEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcC--CeEEE
Confidence 345666778888889999999999999999999998777765433443222222 212111 12344444433 34444
Q ss_pred hhh------------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 166 IIF------------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 166 Ivl------------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
|+. .....|+.-- ---+++++...|.++++..
T Consensus 81 iiydqdqnrleefsrevrrrgfevr--tvtspddfkkslerlirev 124 (134)
T 2l69_A 81 IIYDQDQNRLEEFSREVRRRGFEVR--TVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEE--EESSHHHHHHHHHHHHHHH
T ss_pred EEEeCchhHHHHHHHHHHhcCceEE--EecChHHHHHHHHHHHHHh
Confidence 432 1122333211 1235677777777777654
No 141
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=65.75 E-value=3.6 Score=44.40 Aligned_cols=37 Identities=5% Similarity=-0.298 Sum_probs=26.7
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
.-..+|++.+++.+||.+.+.+..|. |++|++.+|..
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~~g~------Gt~f~i~lP~~ 350 (394)
T 2btz_A 314 GYGLPISRLYAKYFQGDLQLFSMEGF------GTDAVIYLKAL 350 (394)
T ss_dssp CCHHHHHHHHHHHTTCEEEEEEETTT------EEEEEEEEESS
T ss_pred cCCHHHHHHHHHHhCCEEEEEecCCC------ceEEEEEecCC
Confidence 34588999999999999999776554 44555555443
No 142
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=63.62 E-value=19 Score=36.45 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C-----CCCCHHHHHHHHHhhcCCCCcchh--
Q 004184 97 DSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M-----PCLSGVALLSKIMSHKTRKNLPVI-- 166 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M-----PgmdGleLlr~IR~~~~~~~IPII-- 166 (770)
+.....+...+++.|..+. .+.+.+++..... ..+|+|.+-. + +...+++++++|+.. .+|||
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 4455555566677788766 7788888877665 4588886422 1 223468899999763 68888
Q ss_pred --------hhhhHhcCCCcEEe
Q 004184 167 --------IFKCLSKGAVDFLV 180 (770)
Q Consensus 167 --------vl~al~aGAddyL~ 180 (770)
+.++++.||++++.
T Consensus 188 GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 33778899999865
No 143
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=62.18 E-value=20 Score=37.31 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=39.3
Q ss_pred ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 134 IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 134 pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.|++|+-. -.+.-|+.+++.+.. .+|||+. +.+..|..+|+..|-+.++|..+|..++.
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a~-----G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchHHHHHHHc-----CCCEEEecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 35555432 123335556666542 3577643 44666788999999999999999998875
No 144
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=62.12 E-value=30 Score=36.56 Aligned_cols=102 Identities=13% Similarity=0.176 Sum_probs=61.5
Q ss_pred CcEEEEEecC---hhhHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004184 87 SLKVLLVEND---DSTRHVVAALLRNCGY--EVTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (770)
Q Consensus 87 ~lrVLIVDDd---~~~r~~L~~lLe~~G~--eV~~A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~ 159 (770)
.++++|+.+. ......+..+++..|. .|.... +.++..+++.. .|++|+-...+.-|+-+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~Eama---- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSFNESFGLVAMEAQA---- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCSCCSSCHHHHHHHH----
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECccccCCchHHHHHHH----
Confidence 3566666651 1234455666665543 244333 33566666655 5666654332334566777664
Q ss_pred CCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 160 RKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 160 ~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
..+|||+. ..+..|..+++..|.+.++|.++|..++.
T Consensus 348 -~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 348 -SGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp -TTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred -cCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 34677743 34556778999999999999999998875
No 145
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=61.75 E-value=34 Score=33.97 Aligned_cols=66 Identities=14% Similarity=0.034 Sum_probs=50.9
Q ss_pred CCcEEEEEe------cChhhHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHH
Q 004184 86 RSLKVLLVE------NDDSTRHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIM 155 (770)
Q Consensus 86 ~~lrVLIVD------Dd~~~r~~L~~lLe~~G~eV~~A----~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR 155 (770)
...+|++|+ |.......+...|+.+|+++... .+.++..+.|.+ .|.|++ |+.+-+.+++.|+
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l---~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV---TGGNTFFLLQELK 98 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE---CCSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE---CCCCHHHHHHHHH
Confidence 346899996 44457788899999999999887 488888888876 577776 7877778888887
Q ss_pred hhc
Q 004184 156 SHK 158 (770)
Q Consensus 156 ~~~ 158 (770)
+..
T Consensus 99 ~~g 101 (206)
T 3l4e_A 99 RTG 101 (206)
T ss_dssp HHT
T ss_pred HCC
Confidence 653
No 146
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=61.68 E-value=3.8 Score=44.78 Aligned_cols=36 Identities=11% Similarity=-0.070 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~l 63 (770)
.-..+||+.+++++||.|.+.+..|. |..|+++++.
T Consensus 338 GLGL~I~k~iv~~~gG~I~v~s~~g~----Gt~f~i~LP~ 373 (419)
T 1y8o_A 338 GYGLPISRLYARYFQGDLKLYSMEGV----GTDAVIYLKA 373 (419)
T ss_dssp TTHHHHHHHHHHHTTCEEEEEEETTT----EEEEEEEEES
T ss_pred ecCHHHHHHHHHHhCCEEEEEecCCC----CEEEEEEecC
Confidence 34489999999999999999777654 4444444443
No 147
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=61.26 E-value=4 Score=44.24 Aligned_cols=36 Identities=11% Similarity=-0.075 Sum_probs=25.7
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASA 63 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~l 63 (770)
.-..+||+.+++.+||.+.+.+..|. |..|+++++.
T Consensus 327 GLGL~Ivr~i~~~~gG~i~v~s~~g~----Gt~f~i~LP~ 362 (407)
T 2q8g_A 327 GYGLPISRLYAQYFQGDLKLYSLEGY----GTDAVIYIKA 362 (407)
T ss_dssp TCHHHHHHHHHHHTTCEEEEEEETTT----EEEEEEEEES
T ss_pred CCCHHHHHHHHHHhCCEEEEEEcCCC----ceEEEEEECC
Confidence 34589999999999999998776654 4444444443
No 148
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=60.29 E-value=7.7 Score=40.90 Aligned_cols=69 Identities=12% Similarity=0.032 Sum_probs=49.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CC-CCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MP-CLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MP-gmdGleLlr~IR~ 156 (770)
-++++||-++.....|++-++...--.+...|+.+++..+......+||||+|- -. ..+...+++.|.+
T Consensus 114 d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 114 DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 589999999999999998887643233467788888887754334699999997 43 2344455555544
No 149
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=60.01 E-value=4.2 Score=38.47 Aligned_cols=38 Identities=16% Similarity=-0.025 Sum_probs=27.0
Q ss_pred CccchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 22 SKRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 22 ~~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
+..-..+|++.+++.+||.+.+.+..+ .|++|++.+|+
T Consensus 151 g~GlGL~iv~~~~~~~~G~i~i~s~~~------~Gt~~~i~lPl 188 (189)
T 1i58_A 151 GRGVGMDVVKNVVESLNGSISIESEKD------KGTKVTIRLPL 188 (189)
T ss_dssp TCCCHHHHHHHHHHHTTCEEEEEEETT------TEEEEEEEEEC
T ss_pred CCccCHHHHHHHHHHcCCEEEEEeCCC------CceEEEEEEeC
Confidence 444558899999999999988866544 44555555543
No 150
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=59.19 E-value=63 Score=31.67 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=61.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.+|+++-..+.+...+..++.+.+.++. ...+.++++...++....+|+||.- | .....||+. ..+|||
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISR------G-gta~~lr~~---~~iPVV 74 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISR------G-ATSDYIKKS---VSIPSI 74 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEE------H-HHHHHHHTT---CSSCEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEEC------C-hHHHHHHHh---CCCCEE
Confidence 5899999999999999999988777765 6678888988776533568988874 2 345667654 368888
Q ss_pred hhhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
-+ |++.-+++.+|..+
T Consensus 75 ~I-------------~~s~~Dil~al~~a 90 (196)
T 2q5c_A 75 SI-------------KVTRFDTMRAVYNA 90 (196)
T ss_dssp EE-------------CCCHHHHHHHHHHH
T ss_pred EE-------------cCCHhHHHHHHHHH
Confidence 33 55566666666554
No 151
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=58.93 E-value=25 Score=36.11 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=65.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
.++++|+.+.+. ..+..+++..+. .|......++..+++.. .|++|+-...+.-|..+++.+.. .+|
T Consensus 228 ~~~l~i~G~g~~--~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~e~~~~~~~Ea~a~-----G~P 296 (374)
T 2iw1_A 228 NTLLFVVGQDKP--RKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQEAAGIVLLEAITA-----GLP 296 (374)
T ss_dssp TEEEEEESSSCC--HHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSCCSSCHHHHHHHHH-----TCC
T ss_pred ceEEEEEcCCCH--HHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccccCCcccHHHHHHHC-----CCC
Confidence 357777776542 456666665553 35555544556666655 57777644323346677777743 468
Q ss_pred hhhh------hhHhcCCCcEEeC-CCCHHHHHHHHHHHHH
Q 004184 165 VIIF------KCLSKGAVDFLVK-PIRKNELKNLWQHVWR 197 (770)
Q Consensus 165 IIvl------~al~aGAddyL~K-P~~~eeL~~~L~~vlr 197 (770)
||+. ..+..|..+++.. |.+.++|.++|..++.
T Consensus 297 vi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 297 VLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 8754 4466678889998 9999999999999885
No 152
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=58.62 E-value=3.8 Score=44.23 Aligned_cols=36 Identities=6% Similarity=-0.282 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.-..+|++.+++.+||.+.+.+..|. |+.|++.+|.
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~~g~------Gt~f~i~lP~ 349 (394)
T 2e0a_A 314 GYGLPISRLYAKYFQGDLNLYSLSGY------GTDAIIYLKA 349 (394)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEEETTT------EEEEEEEEES
T ss_pred ccCHHHHHHHHHHhCCEEEEEecCCc------cEEEEEEeCC
Confidence 34589999999999999998776554 4445554444
No 153
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=58.24 E-value=22 Score=31.61 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=28.6
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHh
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILED 129 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~ 129 (770)
+|+-|.+..-.+.+++-++..||+|.-+.+-++|+..+++
T Consensus 80 lllqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 80 LLLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EEeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 3455666666677777777778888888888888777764
No 154
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=57.72 E-value=37 Score=36.89 Aligned_cols=89 Identities=13% Similarity=0.157 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCE--EEEEC--CHHHHHHHHHhcCCCc----eEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh---
Q 004184 100 RHVVAALLRNCGYE--VTEAT--NGLQAWKILEDLTNHI----DLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF--- 168 (770)
Q Consensus 100 r~~L~~lLe~~G~e--V~~A~--dg~EALe~L~~~~~~p----DLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl--- 168 (770)
...+..+++..|.. |.... +.++..+++.. . |++|+=...+.-|+-+++.+. ..+|||+.
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~Eg~~~~~lEAma-----~G~PvI~s~~~ 391 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFYEPFGLAPVEAMA-----SGLPAVVTRNG 391 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSCBCCCSHHHHHHH-----TTCCEEEESSB
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcccCCCCcHHHHHHH-----cCCCEEEecCC
Confidence 67788888877652 54443 35777778776 5 888774433334566777764 35788843
Q ss_pred ---hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 169 ---KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 169 ---~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+.+..|..+||..|-+.++|.++|..++.
T Consensus 392 g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 392 GPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 45667778999999999999999988874
No 155
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=56.92 E-value=40 Score=31.30 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCcEEEEEecChhhHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR--NC----GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT 159 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe--~~----G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~ 159 (770)
..++++|+-+.+.. ..++.+++ .. .+.+.-.-+.++..+++.. .|++|+=...+.-|+.+++.+.
T Consensus 49 ~~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 49 QDEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAKDEDFGLTPIEAMA---- 119 (177)
T ss_dssp TTSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCSSCCSCHHHHHHHH----
T ss_pred CCcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCcCCCChHHHHHHH----
Confidence 35677888765432 33444444 32 2334444456677778776 5777763333334667777774
Q ss_pred CCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 160 RKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 160 ~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..+|||+. ..+..+..+++. +.+.++|.++|..++..
T Consensus 120 -~G~PvI~~~~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 120 -SGKPVIAVNEGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp -TTCCEEEESSHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred -cCCcEEEeCCCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 35788853 345567788999 99999999999999864
No 156
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=56.65 E-value=12 Score=39.26 Aligned_cols=87 Identities=20% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHHhhcCCCC-cchh---------
Q 004184 105 ALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIMSHKTRKN-LPVI--------- 166 (770)
Q Consensus 105 ~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-----leLlr~IR~~~~~~~-IPII--------- 166 (770)
+.|.+.||.|. +..|...|- .+.+ ..+++| +.+ .|-..| .++++.|++.. .+ +|||
T Consensus 118 ~~L~k~Gf~Vlpy~~~D~~~ak-~l~~--~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tps 191 (268)
T 2htm_A 118 ERLIEEDFLVLPYMGPDLVLAK-RLAA--LGTATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLPS 191 (268)
T ss_dssp HHHHHTTCEECCEECSCHHHHH-HHHH--HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSHH
T ss_pred HHHHHCCCEEeeccCCCHHHHH-HHHh--cCCCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCHH
Confidence 33445699987 445665444 4444 346655 666 553333 56788888732 45 8988
Q ss_pred -hhhhHhcCCCcEEe-----CCCCHHHHHHHHHHHHH
Q 004184 167 -IFKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 -vl~al~aGAddyL~-----KP~~~eeL~~~L~~vlr 197 (770)
+..++++|++++|+ |--++..+...+...+.
T Consensus 192 DAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 192 HAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 34889999999864 54456666666666554
No 157
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=55.07 E-value=51 Score=35.52 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=63.4
Q ss_pred CcEEEEEecCh-hhHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDD-STRHVVAALLRNCGYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~-~~r~~L~~lLe~~G~eV~-~A~-dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.++++||-+.+ ..+..++.+.+..+-.|. ... +.++..+++.. .|++|+=...+.-|+-+++.+.. .+
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~E~~~~~~lEAma~-----G~ 390 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRFEPCGLTQLYALRY-----GC 390 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHHH-----TC
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcccCCCCHHHHHHHHC-----CC
Confidence 45677776654 345666666666553343 222 33333455554 56666644223345566666643 46
Q ss_pred chhhh------hhHhcC---------CCcEEeCCCCHHHHHHHHHHHHH
Q 004184 164 PVIIF------KCLSKG---------AVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 164 PIIvl------~al~aG---------AddyL~KP~~~eeL~~~L~~vlr 197 (770)
|||+. +.+..| ..+||..|-+.++|.++|..++.
T Consensus 391 PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 391 IPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred CEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 77743 345556 78999999999999999999883
No 158
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=54.73 E-value=56 Score=35.92 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=56.9
Q ss_pred CcEEEEEec----ChhhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCHH
Q 004184 87 SLKVLLVEN----DDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGV 148 (770)
Q Consensus 87 ~lrVLIVDD----d~~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMP------------gmdGl 148 (770)
+..++++|- .....+.++.+-+.++..|+ .+.+.++|..+++ ...|.|++-.-| +...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~---aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH---TTCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH---cCCCEEEEeCCCCcCcccccccccchhHH
Confidence 356777752 23345556555555577766 5889999887776 457888873111 12346
Q ss_pred HHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 149 ALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 149 eLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
.++..+.+......+||| +.+++.+||+....
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 667777653223468998 34788889988764
No 159
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=54.11 E-value=74 Score=30.55 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCcchhhh----
Q 004184 102 VVAALLRNCGYEV-TEATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIIF---- 168 (770)
Q Consensus 102 ~L~~lLe~~G~eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~~~~~IPIIvl---- 168 (770)
.++.++ .+..+ +.+.+..++..... ..+|.|+++. .|. ..+++.+++|++.. .+||++.
T Consensus 101 ~~~~~~--~~~~~~v~~~t~~e~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~ 172 (215)
T 1xi3_A 101 VAKEIA--PNLIIGASVYSLEEALEAEK---KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN 172 (215)
T ss_dssp HHHHHC--TTSEEEEEESSHHHHHHHHH---HTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC
T ss_pred HHHHhC--CCCEEEEecCCHHHHHHHHh---cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC
Confidence 344443 34443 35788888766544 3589999986 653 34788888887652 6788743
Q ss_pred -----hhHhcCCCcEE
Q 004184 169 -----KCLSKGAVDFL 179 (770)
Q Consensus 169 -----~al~aGAddyL 179 (770)
++++.|++.+.
T Consensus 173 ~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 173 KDNAREVLKTGVDGIA 188 (215)
T ss_dssp TTTHHHHHTTTCSEEE
T ss_pred HHHHHHHHHcCCCEEE
Confidence 66778998863
No 160
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=54.06 E-value=5.4 Score=41.93 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=62.4
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.|+|.||-........+..+|+..|++|.......+.+ ..+|+||+ -|.||. +++..+... .. +|||
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv---lGGDGT-~L~aa~~~~-~~-~Pil 95 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS---VGGDGT-ILRILQKLK-RC-PPIF 95 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE---EECHHH-HHHHHTTCS-SC-CCEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE---ECCCHH-HHHHHHHhC-CC-CcEE
Confidence 36788885433226778899999999998765433322 24688776 256773 445555432 22 8888
Q ss_pred hhhhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
-+. .|-.+||. ++.++++..+|.+++.
T Consensus 96 GIN---~G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 96 GIN---TGRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEE---CSSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EEC---CCCCcccc-ccCHHHHHHHHHHHHh
Confidence 553 47778887 5788888888888886
No 161
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=53.06 E-value=6.4 Score=36.07 Aligned_cols=37 Identities=11% Similarity=-0.213 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
.-..+|++++++.|||.+.+.+..+ .|++|++.+|..
T Consensus 114 GlGL~i~~~~~~~~gG~i~~~~~~~------~G~~~~i~lP~~ 150 (161)
T 1bxd_A 114 GLGLAIVQRIVDNHNGMLELGTSER------GGLSIRAWLPVP 150 (161)
T ss_dssp SCCCCTTHHHHHHHTSEEEEEEETT------TEEEEEEEECCC
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCC------CeEEEEEEEeCC
Confidence 3347899999999999988866544 345555555544
No 162
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=52.38 E-value=71 Score=33.24 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=63.7
Q ss_pred CcEEEEEecChh-hHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004184 87 SLKVLLVENDDS-TRHVVAALLRNCGYEVTE-AT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 87 ~lrVLIVDDd~~-~r~~L~~lLe~~G~eV~~-A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~ 162 (770)
.++++|+-+.+. ....++.+.+..+ .++. .. +.++..+++.. .|++|+=..-+.-|+.+++.+. ..
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~EAma-----~G 354 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYFEPFGLVALEAMC-----LG 354 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSCCSSCHHHHHHHH-----TT
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCCCCccHHHHHHHH-----CC
Confidence 456666665542 3356666666666 4443 33 45555556543 5777665422344566777664 24
Q ss_pred cchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 163 LPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 163 IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
+|||+. ..+..| .+++..|.+.++|.++|..++.
T Consensus 355 ~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 355 AIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp CEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 677743 334456 8999999999999999999987
No 163
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=51.87 E-value=23 Score=37.05 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=41.0
Q ss_pred ceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 134 IDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 134 pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.|++|+-...+.-|..+++.+. ..+|||+. +.+..|-.+|+..|-+.++|.++|..++.
T Consensus 285 adv~v~ps~~e~~~~~~~EAma-----~G~PvI~~~~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSEKESFGLVLLEAMA-----CGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCSCCSCCHHHHHHHH-----TTCCEEEECCTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccccCCCchHHHHHHh-----cCCCEEEecCCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 4666654422334566777764 34677754 34555778899999999999999998875
No 164
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=51.58 E-value=64 Score=31.57 Aligned_cols=91 Identities=20% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCcchhhh--
Q 004184 100 RHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIIF-- 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~~~~~IPIIvl-- 168 (770)
...++.++. +..+. .+.+.+++.+... ...|.|+++. .+. .-++++++.+++.. .+|||+.
T Consensus 101 ~~~~~~~~~--~~~ig~sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GG 172 (221)
T 1yad_A 101 PKQIRARFP--HLHIGRSVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGG 172 (221)
T ss_dssp HHHHHHHCT--TCEEEEEECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESS
T ss_pred HHHHHHHCC--CCEEEEEcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECC
Confidence 344555442 55443 6788888877665 4589999976 443 23678888887642 6788743
Q ss_pred -------hhHhcCCCcEEe-----CCCCHHHHHHHHHHHHHH
Q 004184 169 -------KCLSKGAVDFLV-----KPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 169 -------~al~aGAddyL~-----KP~~~eeL~~~L~~vlrr 198 (770)
.++..|++.+.. +.-++.+....+...+++
T Consensus 173 I~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~ 214 (221)
T 1yad_A 173 MTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKE 214 (221)
T ss_dssp CCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHH
Confidence 677889987643 333444444444444443
No 165
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=51.50 E-value=67 Score=32.72 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=51.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCCcE
Q 004184 116 EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAVDF 178 (770)
Q Consensus 116 ~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAddy 178 (770)
.+.+.+|+.+... ..+|.|.+.. .|. .-|++.+++|+... ...+|||++ .++..||+.+
T Consensus 141 S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGINAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSCCTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCCCHHHHHHHHHcCCCEE
Confidence 7899999877665 4589999876 543 23788888887541 136888854 6788999987
Q ss_pred Ee-----CCCCHHHHHHHHHHHH
Q 004184 179 LV-----KPIRKNELKNLWQHVW 196 (770)
Q Consensus 179 L~-----KP~~~eeL~~~L~~vl 196 (770)
.+ +.-++.+....+...+
T Consensus 217 av~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHHHH
Confidence 54 4445555555554444
No 166
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=51.12 E-value=9.9 Score=36.95 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=35.0
Q ss_pred EEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 90 VLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 90 VLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
|||||........+..+|+..|+++..+...+..++.+.. ..+|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~--~~~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIER--IDPDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHH--HCCSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 9999988777778899999999988866654322334443 35888887
No 167
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=50.73 E-value=58 Score=35.04 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=57.7
Q ss_pred CcEEEEEecCh-hhHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 87 SLKVLLVENDD-STRHVVAALLRNCGYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 87 ~lrVLIVDDd~-~~r~~L~~lLe~~G~eV~-~A~-dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.++++||-+.+ .....++.+.+..+-.|. ... ..++..+++.. .|++|+=...+.-|+-+++.+.. .+
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~E~~g~~~lEAma~-----G~ 391 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSRFEPCGLTQLYGLKY-----GT 391 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCSCCSSCSHHHHHHHH-----TC
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCcHHHHHHHHC-----CC
Confidence 34555555443 244555555555443332 222 22232344443 45555533223334556666542 46
Q ss_pred chhhh------hhHhcC---------CCcEEeCCCCHHHHHHHHHHHHH
Q 004184 164 PVIIF------KCLSKG---------AVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 164 PIIvl------~al~aG---------AddyL~KP~~~eeL~~~L~~vlr 197 (770)
|||+. +.+..| ..+||..|-+.++|.++|..++.
T Consensus 392 PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 392 LPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 77743 345556 78999999999999999999884
No 168
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=48.48 E-value=54 Score=33.65 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCceEEEEcc-C------CCCCHHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHH
Q 004184 121 LQAWKILEDLTNHIDLVLTEV-M------PCLSGVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNE 187 (770)
Q Consensus 121 ~EALe~L~~~~~~pDLVLlDi-M------PgmdGleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~ee 187 (770)
++..+++.. .|++|+-. . ++.-|..+++.+. ..+|||+. ..+..| .+++..|-+.++
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a-----~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~ 333 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA-----CGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDK 333 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH-----TTCCEEECSSTTGGGGCCTT-TEEECCTTCHHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH-----cCCCEEEeCCCChHHHHhcC-CceEeCCCCHHH
Confidence 555556554 56666643 2 1444566777664 24677743 445567 899999999999
Q ss_pred HHHHHHHHHH
Q 004184 188 LKNLWQHVWR 197 (770)
Q Consensus 188 L~~~L~~vlr 197 (770)
|.++|..++.
T Consensus 334 l~~~i~~l~~ 343 (394)
T 3okp_A 334 LSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 169
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=48.36 E-value=9 Score=34.44 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=26.3
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
.-..+|++++++++||.+.+.+..+ .|++|++.+|..
T Consensus 109 GlGL~i~~~~~~~~gG~i~~~~~~~------~G~~~~i~lP~~ 145 (152)
T 1id0_A 109 GVGLAVAREITEQYEGKIVAGESML------GGARMEVIFGRQ 145 (152)
T ss_dssp CSCHHHHHHHHHHTTCEEEEEECTT------SSEEEEEEECCC
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCC------CcEEEEEEEecc
Confidence 3347899999999999988865544 345555555544
No 170
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.32 E-value=25 Score=33.29 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=34.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHH--hCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLR--NCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCL 145 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe--~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgm 145 (770)
.+.+||+||-|+.. .+..++. ..++.+..+.. ....+.+......||+||+|.-|..
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGAGSL 87 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECCSSS
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECCCCC
Confidence 45689999988653 3344443 23567766554 3333444433356999999984444
No 171
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=48.15 E-value=47 Score=32.99 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=53.5
Q ss_pred HHHHHHhCCCEEE-EE--CCHHHHHHHHHhcCC--CceEEEEcc-CCCCC-------HHHHHHHHHhhcCCCCcchhhh-
Q 004184 103 VAALLRNCGYEVT-EA--TNGLQAWKILEDLTN--HIDLVLTEV-MPCLS-------GVALLSKIMSHKTRKNLPVIIF- 168 (770)
Q Consensus 103 L~~lLe~~G~eV~-~A--~dg~EALe~L~~~~~--~pDLVLlDi-MPgmd-------GleLlr~IR~~~~~~~IPIIvl- 168 (770)
+.+.++..|..+. .+ .+..+.++.+.. . ..|.|+++. .|+.. +++.+++||+.. ..+||++.
T Consensus 105 ~~~~i~~~g~~igv~~~p~t~~e~~~~~~~--~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~G 180 (228)
T 1h1y_A 105 LIQSIKAKGMRPGVSLRPGTPVEEVFPLVE--AENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDG 180 (228)
T ss_dssp HHHHHHHTTCEEEEEECTTSCGGGGHHHHH--SSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEES
T ss_pred HHHHHHHcCCCEEEEEeCCCCHHHHHHHHh--cCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEEC
Confidence 3344455677665 33 344455555543 2 579999988 77633 356677777653 36777732
Q ss_pred --------hhHhcCCCcEEe-----CCCCHHHHHHHHHHHHH
Q 004184 169 --------KCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 197 (770)
Q Consensus 169 --------~al~aGAddyL~-----KP~~~eeL~~~L~~vlr 197 (770)
.++..|++.++. +--++.+-...|+..++
T Consensus 181 GI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~ 222 (228)
T 1h1y_A 181 GLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVE 222 (228)
T ss_dssp SCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Confidence 667779988644 33345554444544444
No 172
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=47.88 E-value=9.6 Score=34.32 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=25.2
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
-..+|++++++.|||.+.+.+..+ .|++|++.+|.
T Consensus 114 lGL~i~~~~~~~~gG~i~~~~~~~------~G~~~~i~lP~ 148 (150)
T 1ysr_A 114 LGLALVAQQAQLHGGTASLENSPL------GGARLVLRLPG 148 (150)
T ss_dssp CCCHHHHHHHHHTTCEEEEEECTT------SSEEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCEEEEeecCC------CCEEEEEEEeC
Confidence 347899999999999998866544 34555555553
No 173
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=46.84 E-value=9.9 Score=39.80 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred CCcEEEEEec-----ChhhHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEcc-CCCCCH
Q 004184 86 RSLKVLLVEN-----DDSTRHVVAALLRNCG-YEVTEATNGL-----QAWKILEDLTNHIDLVLTEV-MPCLSG 147 (770)
Q Consensus 86 ~~lrVLIVDD-----d~~~r~~L~~lLe~~G-~eV~~A~dg~-----EALe~L~~~~~~pDLVLlDi-MPgmdG 147 (770)
+.++||||.- -+.....|..+|++.| |+|.++.+.. +.+. ..-..+||||++. +...+-
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~ 73 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPE 73 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCH
Confidence 4589999976 2566688999999988 9999887641 2221 1124699999987 655443
No 174
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=46.51 E-value=1.1e+02 Score=27.45 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=66.1
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc-
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVTEATN--GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL- 163 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~d--g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I- 163 (770)
.++++|+.+.+. ...+..+++..+..+.. .- .++..+++.. .|++|+-...+.-|+.+++.+. ..+
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~----adv~v~ps~~e~~~~~~~Eama-----~G~v 100 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILKT----CTLYVHAANVESEAIACLEAIS-----VGIV 100 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTT----CSEEEECCCSCCCCHHHHHHHH-----TTCC
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHHh----CCEEEECCcccCccHHHHHHHh-----cCCC
Confidence 467888887654 57778888888776654 33 4666666654 6888875433444677777774 244
Q ss_pred chhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 164 PVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 164 PIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|||.. ..+.. ..++..|-+.++|...|..++.
T Consensus 101 Pvi~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 101 PVIANSPLSATRQFALD--ERSLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EEEECCTTCGGGGGCSS--GGGEECTTCHHHHHHHHHHHHH
T ss_pred cEEeeCCCCchhhhccC--CceEEcCCCHHHHHHHHHHHHh
Confidence 88862 11222 2348889999999999999886
No 175
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=46.17 E-value=22 Score=37.19 Aligned_cols=63 Identities=17% Similarity=0.233 Sum_probs=44.9
Q ss_pred CCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCH--HHHHHHHHHHHHHh
Q 004184 132 NHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRK--NELKNLWQHVWRRC 199 (770)
Q Consensus 132 ~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~--eeL~~~L~~vlrr~ 199 (770)
..+|+||+|+.|. +|...+...|... +.-++.+.|.-|...|+.|=|.. .++.+.+..+-+.+
T Consensus 138 ~~~DvVLSDMAPn-SG~~~vD~~Rs~~----aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F 202 (269)
T 2px2_A 138 EISDTLLCDIGES-SPSAEIEEQRTLR----ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRF 202 (269)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHH----HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCC-CCccHHHHHHHHH----HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHc
Confidence 5799999999776 8887887777653 11123366777777899999887 77777666655543
No 176
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=46.01 E-value=1e+02 Score=30.73 Aligned_cols=67 Identities=7% Similarity=0.175 Sum_probs=48.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~---~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
.+|..||-++...+..+..++..|+ .|. ...+..+.+..+... ...||+||+|. ... -..+++.+..
T Consensus 105 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~--~~~~l~~~~~ 178 (247)
T 1sui_A 105 GKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN--YLNYHKRLID 178 (247)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTT--HHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHH--HHHHHHHHHH
Confidence 4799999999999999999998876 344 667888777655311 25799999998 543 3445555543
No 177
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=45.56 E-value=2e+02 Score=27.29 Aligned_cols=102 Identities=13% Similarity=0.115 Sum_probs=61.9
Q ss_pred ccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCC
Q 004184 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 83 ~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~ 162 (770)
..+.+ +|-++..... ..+|...+..+..+.+..+++++|.. .++|++|.|. ..+...++... ..
T Consensus 103 ~dL~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~------~~~~~~~~~~~--~~ 166 (232)
T 3i6v_A 103 ADLSG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAVRN--GEADAVFADR------DYLVPIVAESG--GE 166 (232)
T ss_dssp CCTTS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHHHT--TSSSEEEEEH------HHHHHHHHHTT--TS
T ss_pred HHhCC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHHHc--CCcCEEEECh------HHHHHHHHhCC--CC
Confidence 34567 8888776643 33444448999999999999999988 8999999985 12223333321 22
Q ss_pred cchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 163 LPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 163 IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
+.++....+...-..|...+ ...+|...|.+.+.....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~k-~~~~l~~~ln~~l~~l~~ 204 (232)
T 3i6v_A 167 LMFVGDDVPLGGGVGMGLRE-SDGELRGKFDAAITSMKE 204 (232)
T ss_dssp SEEEEEEEECSSCEEEEECT-TCHHHHHHHHHHHHHHHH
T ss_pred eEEecCCCCCCCcEEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 33321111111122333333 356788899888887654
No 178
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=45.18 E-value=96 Score=33.58 Aligned_cols=91 Identities=18% Similarity=0.294 Sum_probs=57.6
Q ss_pred CcEEEEEe----cChhhHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCH
Q 004184 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSG 147 (770)
Q Consensus 87 ~lrVLIVD----Dd~~~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMP------------gmdG 147 (770)
+..+++|| +.+...+.++.+-+.+ +..|+ .+.+.++|..+++. ..|.|.+-+-| +...
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~gpGs~~~tr~~~g~g~p~ 196 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 196 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCHHHHHCCCCCH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecCCCCCCCcccccCcccch
Confidence 45577775 3344555666666665 66655 58899999887764 47888883212 1234
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
+.++..+++......+||| +.+++.+||+.+..
T Consensus 197 ~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 197 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 5666666542212468988 34788999988754
No 179
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=44.40 E-value=21 Score=38.89 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=63.0
Q ss_pred cEEEEEe--cChhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------hcCCCceEEEEccCC
Q 004184 88 LKVLLVE--NDDST---RHVVAALLRNCGYEVTEATNGLQAWKILE-------------------DLTNHIDLVLTEVMP 143 (770)
Q Consensus 88 lrVLIVD--Dd~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~-------------------~~~~~pDLVLlDiMP 143 (770)
.+|+||- .++.. ...|..+|...|+.|+.-....+.+.... +....+||||+ -
T Consensus 39 k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~---l 115 (365)
T 3pfn_A 39 KSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC---L 115 (365)
T ss_dssp CEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE---E
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE---E
Confidence 4788885 33444 34455556677999886555444332221 01235677766 2
Q ss_pred CCCHHHHHHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 144 CLSGVALLSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 144 gmdGleLlr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
|.||. +|+..+... ...+|||-+ ..|-.+||. ++.++++..+|.++++.
T Consensus 116 GGDGT-~L~aa~~~~-~~~~PvlGi---N~G~LGFLt-~~~~~~~~~~l~~vl~g 164 (365)
T 3pfn_A 116 GGDGT-LLYASSLFQ-GSVPPVMAF---HLGSLGFLT-PFSFENFQSQVTQVIEG 164 (365)
T ss_dssp SSTTH-HHHHHHHCS-SSCCCEEEE---ESSSCTTTC-CEESTTHHHHHHHHHHS
T ss_pred cChHH-HHHHHHHhc-cCCCCEEEE---cCCCCccce-eecHHHHHHHHHHHHcC
Confidence 67873 344444321 246788744 457788888 88889999999999864
No 180
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=44.28 E-value=43 Score=34.13 Aligned_cols=54 Identities=24% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCcEEEEEecC--------------------hhhHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHH
Q 004184 86 RSLKVLLVEND--------------------DSTRHVVAALLRNCGYEVTEATNGL-----------------QAWKILE 128 (770)
Q Consensus 86 ~~lrVLIVDDd--------------------~~~r~~L~~lLe~~G~eV~~A~dg~-----------------EALe~L~ 128 (770)
++||||+|-.. ......+...|.+.|++|..+.... ...++++
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 81 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLR 81 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHH
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHH
Confidence 45789998876 1234456666777899998765432 3455555
Q ss_pred hcCCCceEEEEcc
Q 004184 129 DLTNHIDLVLTEV 141 (770)
Q Consensus 129 ~~~~~pDLVLlDi 141 (770)
. ..||||++-.
T Consensus 82 ~--~~~Dvi~~~~ 92 (342)
T 2iuy_A 82 T--ADVDVVHDHS 92 (342)
T ss_dssp H--CCCSEEEECS
T ss_pred h--cCCCEEEECC
Confidence 5 5678777765
No 181
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=43.78 E-value=56 Score=33.50 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=50.1
Q ss_pred cEEEEE-ecChhh---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 88 LKVLLV-ENDDST---RHVVAALLRNCGYEVTE---A----TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIV-DDd~~~---r~~L~~lLe~~G~eV~~---A----~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
.+|.|| +|+..- .+.++..|+..|+.++. + .+....+..+.. ..+|+||+.. .+.+...+++.+++
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~--~~~d~v~~~~-~~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKD--AKPDAMFVFV-PAGQGGNFMKQFAE 216 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHH--HCCSEEEEEC-CTTCHHHHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHh--cCCCEEEEec-cchHHHHHHHHHHH
Confidence 455554 444433 45667778888887652 2 356677777776 5789999855 23378889999988
Q ss_pred hcCCCC-cchh
Q 004184 157 HKTRKN-LPVI 166 (770)
Q Consensus 157 ~~~~~~-IPII 166 (770)
...... +|+|
T Consensus 217 ~g~~~~~v~~~ 227 (368)
T 4eyg_A 217 RGLDKSGIKVI 227 (368)
T ss_dssp TTGGGTTCEEE
T ss_pred cCCCcCCceEE
Confidence 764433 6776
No 182
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=43.69 E-value=33 Score=36.51 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=45.6
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHHh
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC-GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmd-----GleLlr~IR~ 156 (770)
..+|.+||=++.+.+..++.|... .-.+. ...|+.+.+..+.. ..||+||+|. .+... ..++++.+++
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r 188 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHR 188 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHH
Confidence 458999999999999988887532 22333 67777776544322 6799999998 65321 2456666654
No 183
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=43.14 E-value=28 Score=34.43 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
.+|..||-++...+..+..++..|+. |. ...+..+.+..+.. ..||+||+|. .+. -.++++.+.
T Consensus 82 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~--~~~~l~~~~ 150 (221)
T 3dr5_A 82 TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD--LKALVDAAW 150 (221)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH--HHHHHHHHH
Confidence 47999999999999999999988865 55 45566665544322 6799999998 543 233455443
No 184
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=43.01 E-value=5.1 Score=40.52 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004184 599 HYDNCHHLVHNMQQ 612 (770)
Q Consensus 599 ~~~~~~~~~h~~~~ 612 (770)
||||||||+|.+.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (291)
T 2yjp_A 3 HHHHHHHHHHSSGH 16 (291)
T ss_dssp --------------
T ss_pred ccccccccccccCc
No 185
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=42.37 E-value=45 Score=34.13 Aligned_cols=62 Identities=19% Similarity=0.348 Sum_probs=41.6
Q ss_pred CCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCcchhhh----------------hhHh
Q 004184 132 NHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIIF----------------KCLS 172 (770)
Q Consensus 132 ~~pDLVLlDi-M--PgmdG--------------------leLlr~IR~~~~~~~IPIIvl----------------~al~ 172 (770)
...|+|.+++ . |-.|| +++++.||+. .+.+|++++ .+.+
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~ 120 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSRE 120 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHH
Confidence 4578888887 4 33343 3557777765 236777753 3678
Q ss_pred cCCCcEEeCCCCHHHHHHHHHHH
Q 004184 173 KGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 173 aGAddyL~KP~~~eeL~~~L~~v 195 (770)
+|+++++.-.+..+++...+..+
T Consensus 121 aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 121 KGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp TTCCEEECTTCCHHHHHHHHHHH
T ss_pred cCCCEEEECCCCHHHHHHHHHHH
Confidence 99999999888887766555443
No 186
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=42.20 E-value=27 Score=40.34 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=56.9
Q ss_pred CcEEEEE----ecChhhHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEcc-CCC-CC-HHHHHHHHHh
Q 004184 87 SLKVLLV----ENDDSTRHVVAALLRNCGYEVTEA---TNGLQAWKILEDLTNHIDLVLTEV-MPC-LS-GVALLSKIMS 156 (770)
Q Consensus 87 ~lrVLIV----DDd~~~r~~L~~lLe~~G~eV~~A---~dg~EALe~L~~~~~~pDLVLlDi-MPg-md-GleLlr~IR~ 156 (770)
..+|||. |-+..-..++..+|+..||+|+.. ...++.++.+.+ ..+|+|.+-. |.. +. -.++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~--~~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKE--VNADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHH--HTCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH--cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578777 667777888999999999999743 467888888887 7899999988 642 22 2346778877
Q ss_pred hcCCCCcchhh
Q 004184 157 HKTRKNLPVII 167 (770)
Q Consensus 157 ~~~~~~IPIIv 167 (770)
.. ..+|||+
T Consensus 176 ~g--~~i~ViV 184 (579)
T 3bul_A 176 QG--FTIPLLI 184 (579)
T ss_dssp TT--CCSCEEE
T ss_pred cC--CCCeEEE
Confidence 54 4678773
No 187
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=42.09 E-value=59 Score=32.14 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=47.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc---CCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL---TNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~---~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
.+|..||-++...+..+..++..|+. |. ...+..+.+..+... ...||+||+|. .+. -..+++.+.
T Consensus 96 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~--~~~~l~~~~ 168 (237)
T 3c3y_A 96 GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPN--YIKYHERLM 168 (237)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGG--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHH--HHHHHHHHH
Confidence 47999999999999999999988863 44 667888877665311 25799999997 432 234455544
No 188
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=41.72 E-value=52 Score=30.86 Aligned_cols=67 Identities=22% Similarity=0.228 Sum_probs=47.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC--CCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC--LSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~-eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg--mdGleLlr~IR~ 156 (770)
.+|+.||-++...+.++..++..++ .+. ...+..+.+..+.. ..||+|++|. ... .+-.++++.+..
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~ 139 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGT 139 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHh
Confidence 3799999999999999998887765 343 66777766544323 6799999997 433 233456666654
No 189
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=41.40 E-value=60 Score=35.30 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHHhcCCCceEEEEcc-C-C
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG---Y------EV-TEATNGLQAWKILEDLTNHIDLVLTEV-M-P 143 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G---~------eV-~~A~dg~EALe~L~~~~~~pDLVLlDi-M-P 143 (770)
.+|.+||-|+.+.+..++.|.... + .+ +...|+.+.++.+......||+||+|. - |
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P 279 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVP 279 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcc
Confidence 579999999999999998875321 1 23 367888888876532236899999998 6 6
No 190
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=41.37 E-value=67 Score=31.01 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=60.7
Q ss_pred EEEEEecCh--hhHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEcc-CC----CCCHHHHHHHHHhh
Q 004184 89 KVLLVENDD--STRHVVAALLRNCGYEVTEA----TNGLQAWKILEDLTNHIDLVLTEV-MP----CLSGVALLSKIMSH 157 (770)
Q Consensus 89 rVLIVDDd~--~~r~~L~~lLe~~G~eV~~A----~dg~EALe~L~~~~~~pDLVLlDi-MP----gmdGleLlr~IR~~ 157 (770)
..+++-+.. .....+...+++.|..+... .+..+.++.+.+ ...|+|.++. .. ...+++.+++|++.
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~--~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~ 156 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE--AGADMLAVHTGTDQQAAGRKPIDDLITMLKV 156 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH--HTCCEEEEECCHHHHHTTCCSHHHHHHHHHH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH--cCCCEEEEcCCCcccccCCCCHHHHHHHHHH
Confidence 344444443 33455666677778877642 344444444444 3467777653 21 12367888888875
Q ss_pred cCCCCcchhh---------hhhHhcCCCcEE-----eCCCCHHHHHHHHHHHHH
Q 004184 158 KTRKNLPVII---------FKCLSKGAVDFL-----VKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 158 ~~~~~IPIIv---------l~al~aGAddyL-----~KP~~~eeL~~~L~~vlr 197 (770)
. +.+||++ ..+++.||+.++ .+.-++.+....+...++
T Consensus 157 ~--~~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 157 R--RKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp C--SSCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred c--CCCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 3 3678763 267788998875 455566555555555443
No 191
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=40.47 E-value=5.9 Score=43.08 Aligned_cols=12 Identities=0% Similarity=0.362 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhc
Q 004184 716 EAAVTKYRQKKT 727 (770)
Q Consensus 716 ~~~~~r~~~kr~ 727 (770)
++.|.+|.++-.
T Consensus 81 ~~~i~~F~~~~p 92 (456)
T 4g68_A 81 KEIIDQWNKENP 92 (456)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHCc
Confidence 456678877643
No 192
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=40.37 E-value=14 Score=32.12 Aligned_cols=35 Identities=11% Similarity=-0.028 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
-..+|++++++.+||.+.+.+..+ .|+.|++.+|.
T Consensus 88 lGL~~~~~~~~~~gG~i~~~~~~~------~G~~~~i~lP~ 122 (124)
T 3zxq_A 88 SGLRNLRQRADDAGGEFTVENMPT------GGTLLRWSAPL 122 (124)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTT------SSEEEEEEEEC
T ss_pred cCHHHHHHHHHHhCCEEEEEEcCC------CcEEEEEEEec
Confidence 347899999999999988866544 34555555543
No 193
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=39.83 E-value=33 Score=35.62 Aligned_cols=68 Identities=18% Similarity=0.323 Sum_probs=43.3
Q ss_pred HHHHHhcCCCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCcchhhh------------
Q 004184 124 WKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIIF------------ 168 (770)
Q Consensus 124 Le~L~~~~~~pDLVLlDi-M--PgmdG--------------------leLlr~IR~~~~~~~IPIIvl------------ 168 (770)
+..|.+ ...|+|=+++ . |-+|| ++++++||+.. ..+||+++
T Consensus 38 ~~~l~~--~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 38 IQTLVD--NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQH--PDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHH--TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHH--cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEecCcHHHHhhHH
Confidence 334444 4567777775 3 44554 45666676542 46777743
Q ss_pred ----hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 169 ----KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 ----~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.+.++|++++|.-.+.+++....+..+
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 567899999999877777755544433
No 194
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=39.78 E-value=1.3e+02 Score=27.46 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=46.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKI 154 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~I 154 (770)
.+|..||-++...+..+..+...++ .+. ...+..+.+..+......||+|++|. .-..+..++++.|
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 4799999999999999988887764 243 66777776554431136799999996 4334455566665
No 195
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=39.65 E-value=69 Score=28.71 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=46.3
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhc--CCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDL--TNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~--~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~ 162 (770)
..++|.||-| +.+.. -|+-.|+++..+.+.+++.+.+++. ...+.|||+.- +-. .--+.+.+++.. ..
T Consensus 2 ~~mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~---~~ 72 (109)
T 2d00_A 2 VPVRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRG---RD 72 (109)
T ss_dssp CCCCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTC---CC
T ss_pred CccEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhC---CC
Confidence 4578999998 44332 3445689998888888776665432 24788999986 533 233455666522 34
Q ss_pred cchhh
Q 004184 163 LPVII 167 (770)
Q Consensus 163 IPIIv 167 (770)
.|+|+
T Consensus 73 ~P~Il 77 (109)
T 2d00_A 73 LPVLL 77 (109)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 67764
No 196
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=39.34 E-value=34 Score=32.77 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=45.9
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCCCcchh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRKNLPVI 166 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~IR~~~~~~~IPII 166 (770)
.|+|||-...+...+..+|+..|+++..+.... .++.+.. ..+|.||+-= -|...+. +.+.|+... ...+||+
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~~-~~~~i~~~~-~~~~Pil 76 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTGN-CEKVLEHYD-EFNVPIL 76 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCTT-HHHHHHTGG-GTCSCEE
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhhh-HHHHHHHHh-hCCCeEE
Confidence 399999988888899999999999988766543 2333433 4588777742 2222221 244444321 2457877
No 197
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=38.39 E-value=92 Score=27.75 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=52.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCEEE-EECC----------------HHHHHHHHHhcCCCceEEEEccCCCCCH--
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYEVT-EATN----------------GLQAWKILEDLTNHIDLVLTEVMPCLSG-- 147 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~d----------------g~EALe~L~~~~~~pDLVLlDiMPgmdG-- 147 (770)
..+||||-.....+.++..+....||+++ .+.+ .++..++++. ..+|.||+-+ |..+.
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~--~~id~viia~-~~~~~~~ 80 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKK--HCISTVLLAV-PSASQVQ 80 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHH--HTCCEEEECC-TTSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHH--CCCCEEEEeC-CCCCHHH
Confidence 35788888887777666665554577766 3322 2344555555 5678887654 44444
Q ss_pred -HHHHHHHHhhcCCCCcchhhh----hhHhcCCCcEEeCCCCHHHHHHH
Q 004184 148 -VALLSKIMSHKTRKNLPVIIF----KCLSKGAVDFLVKPIRKNELKNL 191 (770)
Q Consensus 148 -leLlr~IR~~~~~~~IPIIvl----~al~aGAddyL~KP~~~eeL~~~ 191 (770)
.+++..+... .+.|.++ ..+...+.---.++++.++|+.+
T Consensus 81 ~~~i~~~l~~~----gv~v~~vP~~~~~~~~~~~~~~l~~v~iedlLgR 125 (141)
T 3nkl_A 81 KKVIIESLAKL----HVEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLGR 125 (141)
T ss_dssp HHHHHHHHHTT----TCEEEECCCHHHHHTTSSCTTCCEECCHHHHHC-
T ss_pred HHHHHHHHHHc----CCeEEECCCHHHHhCCCcccccCCCCCHHHcCCC
Confidence 3455555443 2333322 22222222223577887777643
No 198
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=38.13 E-value=55 Score=29.54 Aligned_cols=86 Identities=7% Similarity=0.174 Sum_probs=47.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHhcCCCceEEEEccCCC-CCHHHHHHHHHhhcCCCCc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEAT-NGLQAWKILEDLTNHIDLVLTEVMPC-LSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~-dg~EALe~L~~~~~~pDLVLlDiMPg-mdGleLlr~IR~~~~~~~I 163 (770)
.+..|+++|.++...+.+. ..|+.++... .-.+.|+.+.- ...|+||+-+ |. ..-..++..+|... +.+
T Consensus 29 ~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~-~~~~~n~~~~~~a~~~~--~~~ 99 (140)
T 3fwz_A 29 SDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI-PNGYEAGEIVASARAKN--PDI 99 (140)
T ss_dssp TTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC-SCHHHHHHHHHHHHHHC--SSS
T ss_pred CCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC-CChHHHHHHHHHHHHHC--CCC
Confidence 3457888888877655433 4677765432 22334443322 3578887754 22 22234555666543 456
Q ss_pred chhhh--------hhHhcCCCcEEe
Q 004184 164 PVIIF--------KCLSKGAVDFLV 180 (770)
Q Consensus 164 PIIvl--------~al~aGAddyL~ 180 (770)
.||+. ...++|++..+.
T Consensus 100 ~iiar~~~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 100 EIIARAHYDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred eEEEEECCHHHHHHHHHCCCCEEEC
Confidence 66632 446788886663
No 199
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=37.84 E-value=65 Score=30.86 Aligned_cols=65 Identities=9% Similarity=0.016 Sum_probs=45.9
Q ss_pred EEEEEecChhhHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~-eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
+|..||-++...+.++..++..++ .+. ...+..+.+.. ....||+||+|. .....-.++++.|.+
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~---~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ---KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS---CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh---cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 799999999999999999988876 444 44555553322 225799999997 544445567777754
No 200
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=37.79 E-value=29 Score=35.45 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhhcCCCCcchhhh------hhHhc--CCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 145 LSGVALLSKIMSHKTRKNLPVIIF------KCLSK--GAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 145 mdGleLlr~IR~~~~~~~IPIIvl------~al~a--GAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.-|+-+++.+. ..+|||+. +.+.. |..+|+..| +.++|.++|..++.
T Consensus 253 ~~~~~~~EAma-----~G~PvI~s~~~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 253 PGATVVSEAAV-----SGTPVVGTGNGCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp CCCHHHHHHHH-----TTCCEEECCTTTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred CccHHHHHHHh-----cCCCEEEcCCCChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 33556666654 24677743 44556 778899999 99999999987764
No 201
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=37.73 E-value=56 Score=31.37 Aligned_cols=52 Identities=27% Similarity=0.233 Sum_probs=35.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNG---LQAWKILEDLTNHIDLVLTE 140 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg---~EALe~L~~~~~~pDLVLlD 140 (770)
++|||||.-..+-..+.+.|+..|+++..+... ++..+.+.. ...+++||+-
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~-~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLAT-MKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTT-CSSEEEEECC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhh-ccCCeEEECC
Confidence 379999977778888899999999998876654 444444432 1234566553
No 202
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=37.53 E-value=43 Score=33.30 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCEEE---EECCH---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchh---------
Q 004184 102 VVAALLRNCGYEVT---EATNG---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVI--------- 166 (770)
Q Consensus 102 ~L~~lLe~~G~eV~---~A~dg---~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPII--------- 166 (770)
.+....++.|..++ ..-|. +.+++.+.. ..||+| .+||+.-- ++++++++. ..+|||
T Consensus 92 ~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~--~~PD~i--EiLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~e 163 (192)
T 3kts_A 92 NAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQK--VQPDCI--ELLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSE 163 (192)
T ss_dssp HHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHH--HCCSEE--EEECTTCH-HHHHHHHHH---HCCCEEEESSCCSHH
T ss_pred HHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhh--cCCCEE--EECCchhH-HHHHHHHHh---cCCCEEEECCcCCHH
Confidence 34445566676544 22232 346777776 678977 55888653 789999876 378998
Q ss_pred -hhhhHhcCCCcEEe
Q 004184 167 -IFKCLSKGAVDFLV 180 (770)
Q Consensus 167 -vl~al~aGAddyL~ 180 (770)
+..|+++||+..-+
T Consensus 164 dv~~al~aGA~aVsT 178 (192)
T 3kts_A 164 QVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHTTTEEEEEE
T ss_pred HHHHHHHcCCeEEEe
Confidence 45889999987654
No 203
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.05 E-value=83 Score=30.96 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. .+ .++++.+++ ..+|+|++
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i 91 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSFSN----PQTVQEILH----QQMPVVSV 91 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESSCC----HHHHHHHHT----TSSCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecCCc----HHHHHHHHH----CCCCEEEE
Confidence 344556677889998865432 235566655 6789888765 33 567777764 36888876
No 204
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=36.98 E-value=82 Score=29.18 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=41.2
Q ss_pred ccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 83 ~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..+.+.+|.++.... ...+|+..++.+..+.+..+++.+|.. ..+|+++++.
T Consensus 108 ~dL~g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~l~~--g~~D~~~~~~ 159 (228)
T 2pyy_A 108 DDLPGKVVATTAGST-----AATYLREHHISVLEVPKIEEAYKALQT--KKADAVVFDA 159 (228)
T ss_dssp GGCTTCEEEEETTSH-----HHHHHHHTTCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HHcCCCeEEEEcCcH-----HHHHHHHcCCceEecCCHHHHHHHHHc--CCCCEEEecH
Confidence 345677888877664 234566678999999999999999987 8899999985
No 205
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=36.76 E-value=39 Score=32.44 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=45.0
Q ss_pred EEEEEecChhhHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCC-ceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGY---EVT-EATNGLQAWKILEDLTNH-IDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~---eV~-~A~dg~EALe~L~~~~~~-pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
+|+.||-++...+.++..++..++ .+. ...+..+.+..+. ... ||+||+|. +...+-.++++.+.+
T Consensus 78 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 78 KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQ--NQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCC--SSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhc--cCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 799999999999999999988876 444 4455554432211 256 99999997 543334456666643
No 206
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=36.72 E-value=1.4e+02 Score=29.82 Aligned_cols=62 Identities=11% Similarity=-0.053 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCEEEEECC-----HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATN-----GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d-----g~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||++..+.. .+ ++++.+.. ..+|.||+-. .+. .-..++++++.. .+|||++
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~-~~~~~~~~~~~~----giPvV~~ 92 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDT-AFSKSLQRANKL----NIPVIAV 92 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSS-TTHHHHHHHHHH----TCCEEEE
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHH-HHHHHHHHHHHC----CCCEEEE
Confidence 34455667778999986653 22 45555555 6799888754 222 124566777654 5788876
No 207
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=36.68 E-value=1.5e+02 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|+-+++.+. ..+|||+. ..+..|..+||.. +.++|.++|..++.
T Consensus 329 ~~~~lEAma-----~G~PvI~~~~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 329 GLTVTEAMW-----KGKPVIGRAVGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp CHHHHHHHH-----TTCCEEEESCHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred ccHHHHHHH-----cCCCEEEccCCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 445555543 24566643 3345577888886 99999999988875
No 208
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=36.43 E-value=83 Score=30.19 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=46.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~--~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
.+|+.||-++...+..+..++..|+ .+. ...+..+.+..+.... ..||+|++|. ... -..+++.+.
T Consensus 95 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~--~~~~l~~~~ 166 (229)
T 2avd_A 95 GRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKEN--CSAYYERCL 166 (229)
T ss_dssp CEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTT--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHH--HHHHHHHHH
Confidence 4799999999999999999988775 343 5677777766554311 4699999997 432 234455544
No 209
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=36.01 E-value=65 Score=30.70 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhCCCEEE---EECCHHHHHH-HHHh--cCCCceEEEEcc
Q 004184 97 DSTRHVVAALLRNCGYEVT---EATNGLQAWK-ILED--LTNHIDLVLTEV 141 (770)
Q Consensus 97 ~~~r~~L~~lLe~~G~eV~---~A~dg~EALe-~L~~--~~~~pDLVLlDi 141 (770)
..+...|..+|+++||+|. ++.|-.+.+. .+.. ....+||||+-=
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 4566789999999999876 5666555443 3321 125689999875
No 210
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=35.73 E-value=1.2e+02 Score=28.86 Aligned_cols=67 Identities=10% Similarity=0.202 Sum_probs=48.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC-CCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT-NHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~-~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
.+|..||-++......+..+...|+ .|. ...+..+.+..+.... ..||+||+|. .+. -..+++.+..
T Consensus 84 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~~--~~~~l~~~~~ 155 (223)
T 3duw_A 84 GRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN--NPAYFEWALK 155 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGGG--HHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcHH--HHHHHHHHHH
Confidence 4799999999999999999988776 243 6778888777665321 4699999997 442 2345555543
No 211
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=35.56 E-value=1.1e+02 Score=29.33 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=41.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcC--CCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLT--NHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~~--~~pDLVLlDi 141 (770)
.+|..||-++...+.++..++..|+. |. ...+..+.+..+.... ..||+||+|.
T Consensus 90 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~ 148 (225)
T 3tr6_A 90 GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA 148 (225)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC
Confidence 47999999999999999999888753 44 6778877776654211 4699999987
No 212
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=35.55 E-value=65 Score=33.00 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=39.2
Q ss_pred cEEEEEecChhhHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCG-----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G-----~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
.+|..||-++...+..+..|...+ -.+. ...|+.+.+... ...||+||+|. .|.
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPI 163 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTT
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCC
Confidence 589999999999999998876431 2233 667777655432 36799999998 654
No 213
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=35.54 E-value=20 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeeccccC
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVLQ 66 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~~ 66 (770)
.-...|++.++++|||.+.+.+..+ .|++|++.+|..
T Consensus 116 GlGL~iv~~~~~~~~G~i~i~~~~~------~Gt~~~i~lP~~ 152 (177)
T 3sl2_A 116 GLGLAIAKEMVQAHGGDIWADSIEG------KGTTITFTLPYK 152 (177)
T ss_dssp CCHHHHHHHHHHHTTCCEEEEEETT------TEEEEEEEEEEE
T ss_pred CcCHHHHHHHHHHcCCEEEEEecCC------CCeEEEEEEeCC
Confidence 3448999999999999988866544 344555555544
No 214
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=35.45 E-value=7.9 Score=41.73 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 004184 709 KNKFADREAAVTKYRQKKT 727 (770)
Q Consensus 709 ~~~~~~r~~~~~r~~~kr~ 727 (770)
....++..+.|..|-..+-
T Consensus 98 E~~~~~i~~~v~~~i~~~l 116 (332)
T 2es4_D 98 ELTPAALDALVRREIAAQL 116 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 3455666777766665543
No 215
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=35.45 E-value=18 Score=31.46 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=25.9
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.-..+|++++++.+||.+.+.+..+ +.|+.|++.+|+
T Consensus 91 GlGL~i~~~~~~~~gG~i~~~~~~~-----~~G~~~~i~lP~ 127 (129)
T 3zxo_A 91 GSGLTNLRQRAEQAGGEFTLASMPG-----ASGTVLRWSAPL 127 (129)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTT-----TCCEEEEEEEES
T ss_pred CcCHHHHHHHHHHcCCEEEEeeCCC-----CCcEEEEEEecC
Confidence 3447899999999999988865544 045556555554
No 216
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=35.32 E-value=26 Score=35.14 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=55.8
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-CC--CC--HHHHHHHHHhhcCCCCcchhhh-----
Q 004184 102 VVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-PC--LS--GVALLSKIMSHKTRKNLPVIIF----- 168 (770)
Q Consensus 102 ~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-M-Pg--md--GleLlr~IR~~~~~~~IPIIvl----- 168 (770)
.+...|+..||.+. -+..+...+..+.. -+||.|=+|. + -+ .+ ...+++.|........+.||+-
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~--l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~viaeGVEt~ 220 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTR--LPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVVAEGVENA 220 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHH--SCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEEECCCCSH
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 34455677899876 45567778888887 7899999995 3 11 12 2344555543322235566632
Q ss_pred ----hhHhcCCCc----EEeCCCCHHHHHHHHHH
Q 004184 169 ----KCLSKGAVD----FLVKPIRKNELKNLWQH 194 (770)
Q Consensus 169 ----~al~aGAdd----yL~KP~~~eeL~~~L~~ 194 (770)
.+.+.|++- |+.||+..+++...+..
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 445667653 47799999998877654
No 217
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=35.14 E-value=1.2e+02 Score=29.97 Aligned_cols=102 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEA--------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A--------~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~ 157 (770)
.+.+||++--+.. +..|...|+..|++|..+ ....+.++.+.. ..+|+|++=- -.+++.+-.+-
T Consensus 109 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~--~~~d~v~ftS---~s~v~~~~~~~-- 180 (229)
T 3p9z_A 109 EKKSVLYLRAKEI-VSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKP--KEKSILIFTA---ISHAKAFLHYF-- 180 (229)
T ss_dssp TTCEEEEEEESSC-SSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSC--CTTCEEEECS---HHHHHHHHHHS--
T ss_pred CCCEEEEECCccc-hHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhc--CCCeEEEEEC---HHHHHHHHHHh--
Confidence 3568888876643 677888999899765422 233345556654 6788887732 12333222221
Q ss_pred cCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 158 KTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 158 ~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.....++++.+ .+.+.|..-++.+-.+.+.|.++|..+
T Consensus 181 ~~~~~~~~~aIG~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 181 EFLENYTAISIGNTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CCCTTCEEEESSHHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred CcccCCEEEEECHHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 12234555543 445668776677778899999888765
No 218
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=34.97 E-value=1.8e+02 Score=29.98 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=54.2
Q ss_pred EEEEEec--ChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--C--CCCCHHHHHHHHHhhcCCC
Q 004184 89 KVLLVEN--DDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--M--PCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 89 rVLIVDD--d~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--M--PgmdGleLlr~IR~~~~~~ 161 (770)
.|||+.. .+.....+....+.+|..+. .+.+.+|+...+.. .+|+|-+-- + .. -+++.+.+|...- ..
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~-~dl~~~~~l~~~v-~~ 212 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLD-VDRDCFARIAPGL-PS 212 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCC-BCTTHHHHHGGGS-CT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccc-cCHHHHHHHHHhC-cc
Confidence 4555432 22334445555667898866 78899887766653 478777753 1 11 2356677776542 23
Q ss_pred Ccchhh----------hhhHhcCCCcEEeC
Q 004184 162 NLPVII----------FKCLSKGAVDFLVK 181 (770)
Q Consensus 162 ~IPIIv----------l~al~aGAddyL~K 181 (770)
.+|||+ ..++..|++++|+=
T Consensus 213 ~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 213 SVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 678873 26688999999763
No 219
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=34.96 E-value=45 Score=35.41 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=62.8
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYE----------VTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~e----------V~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
..+++||-+.+.....|.++++..|+. |.......+...++.. .|++++-- .-+.-|..+++.+.
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHHH
Confidence 467888887776656777777777754 3333323445555543 68877643 32222344566553
Q ss_pred hhcCCCCcchhhh-------hhHhc-CCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 156 SHKTRKNLPVIIF-------KCLSK-GAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 156 ~~~~~~~IPIIvl-------~al~a-GAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..+|||+- ..... +..+++..+-+.++|.++|..++..
T Consensus 301 -----~G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 -----WGIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -----TTCCEEECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS
T ss_pred -----hCCCEEECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH
Confidence 35788741 11222 2356777788999999999999874
No 220
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=34.88 E-value=55 Score=35.84 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=41.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--C----CE---E-EEECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--G----YE---V-TEATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G----~e---V-~~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
.+|-+||=|+.+.++.++.|... + .+ + +...|+.+.++...+....||+||+|+ -+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 57899999999999999887432 1 12 3 367899988876654346899999998 53
No 221
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=34.75 E-value=48 Score=32.11 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLT 139 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLl 139 (770)
+|+|||=-.-+...+...|+.+|++++.+.+.++ +.. +|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~----l~~----~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV----VLA----ADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH----HHH----CSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH----HhC----CCEEEE
Confidence 6999997777778899999999999998888654 333 577666
No 222
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=34.58 E-value=46 Score=34.20 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=57.0
Q ss_pred cEEEEEecC-----hhhHHHHHHHHHhCCCEEEEECCHHHHH----------HHHHhcCCCceEEEEccCCCCCH--HHH
Q 004184 88 LKVLLVEND-----DSTRHVVAALLRNCGYEVTEATNGLQAW----------KILEDLTNHIDLVLTEVMPCLSG--VAL 150 (770)
Q Consensus 88 lrVLIVDDd-----~~~r~~L~~lLe~~G~eV~~A~dg~EAL----------e~L~~~~~~pDLVLlDiMPgmdG--leL 150 (770)
.+|+||-.. ......+..+|+..|++|....+..+.+ +.+. ..+|+||+ -|.|| +++
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~D~vi~---~GGDGT~l~a 79 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG---QQADLAVV---VGGDGNMLGA 79 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH---HHCSEEEE---CSCHHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc---cCCCEEEE---EcCcHHHHHH
Confidence 467766431 2335567778888999988665433221 1222 24788887 36677 334
Q ss_pred HHHHHhhcCCCCcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 151 LSKIMSHKTRKNLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 151 lr~IR~~~~~~~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
++.+.. ..+|+|-+- .|-.+||.. +.++++..+|..++.
T Consensus 80 ~~~~~~----~~~P~lGI~---~Gt~gfla~-~~~~~~~~al~~i~~ 118 (292)
T 2an1_A 80 ARTLAR----YDINVIGIN---RGNLGFLTD-LDPDNALQQLSDVLE 118 (292)
T ss_dssp HHHHTT----SSCEEEEBC---SSSCCSSCC-BCTTSHHHHHHHHHT
T ss_pred HHHhhc----CCCCEEEEE---CCCcccCCc-CCHHHHHHHHHHHHc
Confidence 444432 357877553 677777774 456777777777765
No 223
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=33.87 E-value=37 Score=35.24 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCcchhhh-----------
Q 004184 123 AWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIIF----------- 168 (770)
Q Consensus 123 ALe~L~~~~~~pDLVLlDi-M--PgmdG--------------------leLlr~IR~~~~~~~IPIIvl----------- 168 (770)
.++.|.+ . .|+|.+++ . |-.|| ++++++||+. ..+|||++
T Consensus 35 ~~~~l~~--~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~ 108 (271)
T 1ujp_A 35 AVEEVLP--Y-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL---TEKPLFLMTYLNPVLAWGP 108 (271)
T ss_dssp HHHHHGG--G-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CCSCEEEECCHHHHHHHCH
T ss_pred HHHHHHh--c-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCEEEEecCcHHHHhhH
Confidence 3344444 5 89999987 5 32333 4667777765 36787752
Q ss_pred -----hhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 169 -----KCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 169 -----~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
.+.++|++++|.--+..+++...+..+
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 467889999999877777666555443
No 224
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=33.76 E-value=97 Score=30.92 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATN-----GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d-----g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||.+..+.. ..+.++.+.. ..+|-||+-. .... +.++.++.. .+|||++
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~~---~~~~~l~~~----~iPvV~~ 94 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET--RRVDALIVAHTQPED---FRLQYLQKQ----NFPFLAL 94 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH--TCCSEEEECSCCSSC---HHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc--CCCCEEEEeCCCCCh---HHHHHHHhC----CCCEEEE
Confidence 44456667788998875432 2456777766 6789888755 3322 566667653 5788866
No 225
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=33.74 E-value=1.6e+02 Score=27.67 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=59.9
Q ss_pred ccCCCcEEEEEecChhhHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcC--
Q 004184 83 LHLRSLKVLLVENDDSTRHVVAALLRNC-GYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKT-- 159 (770)
Q Consensus 83 ~~~~~lrVLIVDDd~~~r~~L~~lLe~~-G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~-- 159 (770)
..+.+.+|.++....... . +++.. +..++.+.+..+++++|.. .++|++++|. ..+...++....
T Consensus 106 ~dL~g~~i~~~~g~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~------~~~~~~~~~~~~~~ 173 (237)
T 3kzg_A 106 DDLHGKKIGVRKGTPYAR-Q---VLSENRNNQVIFYELIQDMLLGLSN--NQVDASLMDY------EAAKYWMASEPYAY 173 (237)
T ss_dssp GGGTTCEEEEETTSTHHH-H---HHHTCSSCEEEEESSHHHHHHHHHT--TSSSEEEEEH------HHHHHHHTTSSTTH
T ss_pred HHhCCCEEEEecCCHHHH-H---HHHhCCCCcEEEeCCHHHHHHHHHc--CCCCEEEeCc------HHHHHHHHhCCccc
Confidence 345667888887765322 2 22222 4788899999999999988 8999999985 122223332110
Q ss_pred ---CCCcchhhhhhH-hcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 160 ---RKNLPVIIFKCL-SKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 160 ---~~~IPIIvl~al-~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
...+.++- ..+ ...-..+...+ ...+|...|.+++.....
T Consensus 174 ~~l~~~l~~~~-~~~~~~~~~~~~~~k-~~~~l~~~l~~~l~~l~~ 217 (237)
T 3kzg_A 174 KLIGKKYKLIG-KKISIGEGYSIMANP-DQFVLIKKINKILLEMEA 217 (237)
T ss_dssp HHHCCSEEEEE-EEEECTTCBCCEECG-GGHHHHHHHHHHHHHHHH
T ss_pred cccCCceEEec-CccccCccEEEEEcC-CCHHHHHHHHHHHHHHHH
Confidence 11222221 111 11112222222 256899999999887654
No 226
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=33.34 E-value=98 Score=32.27 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=63.3
Q ss_pred CcEEEEEecChh-----hHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEccCCCCCHHHH
Q 004184 87 SLKVLLVENDDS-----TRHVVAALLRNCGYE---------VTEAT--NGLQAWKILEDLTNHIDLVLTEVMPCLSGVAL 150 (770)
Q Consensus 87 ~lrVLIVDDd~~-----~r~~L~~lLe~~G~e---------V~~A~--dg~EALe~L~~~~~~pDLVLlDiMPgmdGleL 150 (770)
..+++||-+.+. ....++.+++..|+. +.... +.++..+++.. .|++|+=..-+.-|+-+
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~~E~~~~~~ 290 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSSGEGFGLCS 290 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCSCCSSCHHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCCcCCCCcHH
Confidence 456666655443 246666666666654 22222 35566667765 57777643333446667
Q ss_pred HHHHHhhcCCCCcchhhh------hhHhcCCC---------------cE--EeCCCCHHHHHHHHHHHHH
Q 004184 151 LSKIMSHKTRKNLPVIIF------KCLSKGAV---------------DF--LVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 151 lr~IR~~~~~~~IPIIvl------~al~aGAd---------------dy--L~KP~~~eeL~~~L~~vlr 197 (770)
++.+. ..+|||+. ..+..|.. ++ |..|-+.++|.++| .++.
T Consensus 291 lEAma-----~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAV-----LGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHT-----TTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHH-----cCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 77763 35788843 34455555 88 99999999999999 8864
No 227
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=33.25 E-value=1.1e+02 Score=31.08 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=37.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--CC----------EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--GY----------EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G~----------eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
.+|..||-++...+..+..+ .. ++ .+. ...|+.+.+.. . ..||+||+|. .|
T Consensus 99 ~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 99 DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDP 163 (281)
T ss_dssp SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCC
Confidence 48999999999999988887 33 22 233 56677665543 3 6799999998 65
No 228
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=32.95 E-value=2e+02 Score=30.06 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=51.9
Q ss_pred cCCCcEEEEEecChhhH-HHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC
Q 004184 84 HLRSLKVLLVENDDSTR-HVVAALLRNCGYEVT-EAT-NGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r-~~L~~lLe~~G~eV~-~A~-dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~ 160 (770)
.|.++||.||---..-. ..+..+.+.-+++++ .+. +.+.+-++.+. ..+..+ .|+ +.+-.. ..
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~--~g~~~~-~~~----------~~ll~~-~~ 89 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTER--FGGEPV-EGY----------PALLER-DD 89 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHH--HCSEEE-ESH----------HHHHTC-TT
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHH--cCCCCc-CCH----------HHHhcC-CC
Confidence 45678899988776665 344444444477776 333 33434333333 111111 222 111111 11
Q ss_pred CCcchh----------hhhhHhcCCCcEEeCCC--CHHHHHHHHHHHHH
Q 004184 161 KNLPVI----------IFKCLSKGAVDFLVKPI--RKNELKNLWQHVWR 197 (770)
Q Consensus 161 ~~IPII----------vl~al~aGAddyL~KP~--~~eeL~~~L~~vlr 197 (770)
.++.+| +..|+++|..=|+-||+ +.+++.+++..+-+
T Consensus 90 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 90 VDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233333 33788899988999997 55677666655443
No 229
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=32.95 E-value=1.2e+02 Score=28.78 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=43.2
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGY--EVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~--eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+.+|.+. ........+..++...|+ .++.+.+..+++..|.. ..+|+++.+.
T Consensus 145 dL~g~~i~~~-~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 201 (259)
T 2v25_A 145 DMKGANIGVA-QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDA--KRVDAFSVDK 201 (259)
T ss_dssp GCTTCEEEEE-TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HhCCCEEEEe-cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHc--CCCcEEEecH
Confidence 4556777766 455566778888887775 67789999999999987 8899999985
No 230
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=32.91 E-value=22 Score=31.36 Aligned_cols=35 Identities=11% Similarity=-0.041 Sum_probs=24.8
Q ss_pred ccchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 23 KRDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 23 ~~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
..-..+|++++++++||.+.+.+.. |++|++.+|+
T Consensus 91 ~GlGL~~~~~~~~~~gG~i~~~s~~--------Gt~~~i~lP~ 125 (128)
T 3ehg_A 91 KGHGLLGMRERLEFANGSLHIDTEN--------GTKLTMAIPN 125 (128)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEECSS--------SEEEEEEEEC
T ss_pred CCccHHHHHHHHHHcCCEEEEEeCC--------CEEEEEEEec
Confidence 3445899999999999998886543 4455555543
No 231
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=32.78 E-value=57 Score=32.85 Aligned_cols=92 Identities=20% Similarity=0.277 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhcCCCCcchhh--
Q 004184 101 HVVAALLRNCGYEVTEATN---GLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHKTRKNLPVII-- 167 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~d---g~EALe~L~~~~~~pDLVLlDi-MPgmdG-------leLlr~IR~~~~~~~IPIIv-- 167 (770)
..+...+++.|..+..+-+ ..+.++.+. ..+|+|++.. .|+..| ++-+++||+.. ..++|.+
T Consensus 102 ~~~i~~i~~~G~k~gval~p~t~~e~l~~~l---~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~VdG 176 (228)
T 3ovp_A 102 GALIKDIRENGMKVGLAIKPGTSVEYLAPWA---NQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIEVDG 176 (228)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCGGGTGGGG---GGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHh---ccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEEEeC
Confidence 3444555777877664433 233333332 3478998877 788766 44567777653 3455542
Q ss_pred -------hhhHhcCCCcEEe-----CCCCHHHHHHHHHHHHH
Q 004184 168 -------FKCLSKGAVDFLV-----KPIRKNELKNLWQHVWR 197 (770)
Q Consensus 168 -------l~al~aGAddyL~-----KP~~~eeL~~~L~~vlr 197 (770)
-.+.++||+-++. +--++.+-...|+..+.
T Consensus 177 GI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 177 GVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp SCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 2778999998654 43355554444544443
No 232
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=32.54 E-value=21 Score=34.03 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHhCCccccCCcc
Q 004184 25 DENAVVGEQQHLVGDDRLNDSSI 47 (770)
Q Consensus 25 ~~~AIv~~Lv~LmGG~i~v~S~i 47 (770)
-..+|++++++.+||.+.+.+..
T Consensus 183 lGL~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 183 HGLLGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp CHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHcCCEEEEeCCC
Confidence 34789999999999999886653
No 233
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=32.32 E-value=2.2e+02 Score=32.00 Aligned_cols=92 Identities=13% Similarity=0.261 Sum_probs=54.5
Q ss_pred CcEEEEEec----ChhhHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCH
Q 004184 87 SLKVLLVEN----DDSTRHVVAALLRNCG-YEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSG 147 (770)
Q Consensus 87 ~lrVLIVDD----d~~~r~~L~~lLe~~G-~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPg------------mdG 147 (770)
+..+++|+. ...+.+.++.+-+.++ ..|+ .+.+.++|..++.. ..|.|++.+-|+ ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 456777763 3334455556555553 4444 67788888777764 478887643111 223
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEeC
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLVK 181 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~K 181 (770)
+.++..+++......+||| +.+|+.+||+..+.=
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4555554332212358998 447899999987653
No 234
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=32.25 E-value=92 Score=30.48 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=46.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLT--NHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~--~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
.+|..||-++......+..++..|+ .|. ...+..+.+..+.... ..||+||+|. .+. -..+++.+.
T Consensus 98 ~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~--~~~~l~~~~ 169 (232)
T 3cbg_A 98 GQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRN--YPRYYEIGL 169 (232)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGG--HHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHH--HHHHHHHHH
Confidence 4799999999999999999887765 243 6677777776654312 4699999997 432 234455554
No 235
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=31.86 E-value=2.5e+02 Score=28.57 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCCCcchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
|.-+++.+.. .+|||+. ..+..| .+|+..+ +.++|.++|..++.
T Consensus 291 g~~~lEA~a~-----G~Pvi~~~~~~~~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 291 GGVQEEAPSL-----GVPVLVLRDTTERPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp HHHHHHHHHH-----TCCEEECSSCCSCHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CChHHHHHhc-----CCCEEEecCCCCCceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 4445555532 4577643 335667 8888877 99999999999885
No 236
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=31.53 E-value=52 Score=31.93 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=37.9
Q ss_pred ccCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCc-eEEEEcc
Q 004184 83 LHLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHI-DLVLTEV 141 (770)
Q Consensus 83 ~~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~p-DLVLlDi 141 (770)
..+.+++|||.--.--+-..|...|...|++|+.+.-..+.++.+.. ..+ .++..|+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~~~~~~~Dl 74 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGASDIVVANL 74 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTCSEEEECCT
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCCceEEEccc
Confidence 34567899999998888888877777789999855443444444544 456 6677776
No 237
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=31.52 E-value=10 Score=39.94 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 004184 709 KNKFADREAAVTKYRQK 725 (770)
Q Consensus 709 ~~~~~~r~~~~~r~~~k 725 (770)
+....+=.|+..|--.-
T Consensus 136 qitasdfvaawqrvvdp 152 (564)
T 4faj_A 136 QITASDFVAAWQRVVDP 152 (564)
T ss_dssp BCCHHHHHHHHHHHHCG
T ss_pred EeeHHHHHHHHHhhcCc
Confidence 44556666776665443
No 238
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=31.52 E-value=1.1e+02 Score=27.45 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=44.9
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
+|+.||-++...+.++..+...+..+. ...+..+.+..+......||+|+++. .. .+-.++++.+.
T Consensus 65 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 489999999999999988887665444 45566665554443123799999997 53 33345666665
No 239
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=31.16 E-value=2.2e+02 Score=27.43 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=45.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEcc-CC--------CCCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCCc
Q 004184 116 EATNGLQAWKILEDLTNHIDLVLTEV-MP--------CLSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAVD 177 (770)
Q Consensus 116 ~A~dg~EALe~L~~~~~~pDLVLlDi-MP--------gmdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAdd 177 (770)
.+.+..++..... ..+|.|++.. .| ...++++++++++.. ..+||++. +++..|++.
T Consensus 122 s~~t~~e~~~a~~---~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~~~nv~~~~~~Ga~g 196 (227)
T 2tps_A 122 SAHTMSEVKQAEE---DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGITIDNAAPVIQAGADG 196 (227)
T ss_dssp EECSHHHHHHHHH---HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCCTTTSHHHHHTTCSE
T ss_pred ecCCHHHHHHHHh---CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCCHHHHHHHHHcCCCE
Confidence 4578888665554 3579898743 32 124688888887643 24788743 567788887
Q ss_pred EE-----eCCCCHHHHHHHHHHHHH
Q 004184 178 FL-----VKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 178 yL-----~KP~~~eeL~~~L~~vlr 197 (770)
+. .+.-++.+....+...++
T Consensus 197 v~vgs~i~~~~d~~~~~~~~~~~~~ 221 (227)
T 2tps_A 197 VSMISAISQAEDPESAARKFREEIQ 221 (227)
T ss_dssp EEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred EEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 63 333445343333433333
No 240
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=30.93 E-value=2e+02 Score=27.01 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred ccCCCcEEEEEecChhhHHHHHHHHHhCC---CEEEEE-CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhc
Q 004184 83 LHLRSLKVLLVENDDSTRHVVAALLRNCG---YEVTEA-TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHK 158 (770)
Q Consensus 83 ~~~~~lrVLIVDDd~~~r~~L~~lLe~~G---~eV~~A-~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~ 158 (770)
..+.+.+|.++.... ....+..++...+ +.+... .+..+++++|.. .++|++++|. ..+...+++..
T Consensus 111 ~dL~g~~i~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--g~vDa~~~~~------~~~~~~~~~~~ 181 (246)
T 4eq9_A 111 DDIGGKSTEVVQATT-SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD--GQFDYKIFDK------IGVETVIKNQG 181 (246)
T ss_dssp GGCTTCEEEECTTCH-HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT--TSSSEEEEEH------HHHHHHHHHHT
T ss_pred HHhCCCEEEEecCcc-HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc--CCceEEEecH------HHHHHHHHhCC
Confidence 345667887776554 4566677666654 555533 489999999988 8999999985 22223333332
Q ss_pred CCCCcchhhhhhHhcC-CCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 159 TRKNLPVIIFKCLSKG-AVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 159 ~~~~IPIIvl~al~aG-AddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
...+.++........ ..-.+.| ...+|...|.+++.....
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~k--~~~~l~~~ln~~l~~l~~ 222 (246)
T 4eq9_A 182 -LDNLKVIELPSDQQPYVYPLLAQ--GQDELKSFVDKRIKELYK 222 (246)
T ss_dssp -CTTEEEEECCCSSCCEECCEEET--TCHHHHHHHHHHHHHHHH
T ss_pred -CCCceEecCcCCCCCcEEEEEcC--CCHHHHHHHHHHHHHHHh
Confidence 122333221111111 1112334 235888899888887643
No 241
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=30.88 E-value=69 Score=32.02 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCcEEEEEecCh------hhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhh
Q 004184 86 RSLKVLLVENDD------STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSH 157 (770)
Q Consensus 86 ~~lrVLIVDDd~------~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~ 157 (770)
...+|+||+-.. .....+...|+.+|+++..+....+..+.|.+ .|.||+ |+.+-..+++.|++.
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l---pGG~~~~~~~~l~~~ 100 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV---GGGNTFQLLKESRER 100 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE---CCSCHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE---CCCcHHHHHHHHHHC
Confidence 346899997542 66777888999999998877433334455554 566665 788888888888764
No 242
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=30.44 E-value=11 Score=40.42 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCccccccccccc
Q 004184 594 EQLTQHYDNCHHL 606 (770)
Q Consensus 594 ~~~~~~~~~~~~~ 606 (770)
.-||-||||||||
T Consensus 300 ~~~~~~~~~~~~~ 312 (314)
T 3tr9_A 300 LYFQGHHHHHHHH 312 (314)
T ss_dssp -------------
T ss_pred hhccccccccccc
Confidence 3355555544443
No 243
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=30.29 E-value=1.3e+02 Score=27.74 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=62.0
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.+.+.+|.++..... ...+...+... ..+..+.+..+++++|.. .++|++++|. ..+...++... ...+
T Consensus 106 dL~g~~v~~~~g~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~--grvDa~~~~~------~~~~~~~~~~~-~~~~ 174 (227)
T 3tql_A 106 GLKGKIIGVQGGTTF-DSYLQDSFGNS-ITIQRYPSEEDALMDLTS--GRVDAVVGDT------PLIKQWLKQNG-RREY 174 (227)
T ss_dssp TTTTCEEEEETTSHH-HHHHHHHHGGG-SEEEEESSHHHHHHHHTT--TSSSEEESCH------HHHHHHHHHTT-CCSE
T ss_pred HhCCCEEEEEecccH-HHHHHHhcccc-ceEEEcCCHHHHHHHHHc--CCcCEEEeCh------HHHHHHHHhCC-CCCE
Confidence 456778888876654 34444444332 788999999999999987 8999999874 22233333332 1223
Q ss_pred chhh--h--h-hHhcCCCcEEeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVII--F--K-CLSKGAVDFLVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIv--l--~-al~aGAddyL~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
.++- + . .+..+..-.+.|- ..+|...|.+++.....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~l~~l~~ 215 (227)
T 3tql_A 175 VLIGKPVNDPNYFGKGVGIAVKKG--NQALLLKLNKALAAIKA 215 (227)
T ss_dssp EEEEEECCCGGGCCSCBCCEEETT--CHHHHHHHHHHHHHHHH
T ss_pred EEecCcccCccccccceEEEEcCC--CHHHHHHHHHHHHHHHh
Confidence 3321 1 1 1111222223342 46788889988887643
No 244
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=30.11 E-value=1.4e+02 Score=30.65 Aligned_cols=91 Identities=9% Similarity=0.073 Sum_probs=51.4
Q ss_pred HHHHHHhCCCE--EEEEC-CHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh---------hhh
Q 004184 103 VAALLRNCGYE--VTEAT-NGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI---------IFK 169 (770)
Q Consensus 103 L~~lLe~~G~e--V~~A~-dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII---------vl~ 169 (770)
|++.|..-... +.... +..+.++.+.. ..+|.||+|+ --..+.-.+...|+........++| +..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~--~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAE--AGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHH--TTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhc--CCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 45566543222 22333 44666777766 6799999999 5444444455555433211122333 347
Q ss_pred hHhcCCCcEEe-CCCCHHHHHHHHHHH
Q 004184 170 CLSKGAVDFLV-KPIRKNELKNLWQHV 195 (770)
Q Consensus 170 al~aGAddyL~-KP~~~eeL~~~L~~v 195 (770)
+++.|++.+++ |--+.+++..++..+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 78899988654 444677777665543
No 245
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=30.04 E-value=2.4e+02 Score=30.05 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=56.4
Q ss_pred CcEEEEEe----cChhhHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCH
Q 004184 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSG 147 (770)
Q Consensus 87 ~lrVLIVD----Dd~~~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPg------------mdG 147 (770)
+..++.++ +.....+.++.+-+.+ +..|. .+.+.++|..+++. ..|.|++-.-++ ..-
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g~G~~~~~r~~~g~~~p~ 208 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIGPGSVCTTRKKTGVGYPQ 208 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTBCHHHHHCBCCCH
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCCCCcCcCccccCCCCccH
Confidence 34566665 2333555666665565 66554 67889999877763 578886643222 223
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcE-EeCCC
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDF-LVKPI 183 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddy-L~KP~ 183 (770)
+.++..+.+......+||| +++++.+||+.. +-+||
T Consensus 209 ~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 209 LSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 4444444432111358888 458999999986 44565
No 246
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=29.86 E-value=1.5e+02 Score=28.32 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=38.8
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+.+|.++..... ...+...+ .+..+..+.+..+++++|.. .++|++|+|.
T Consensus 127 dL~g~~i~v~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 179 (249)
T 4f3p_A 127 DLNGKVIAAKTGTAT-IDWIKAHL--KPKEIRQFPNIDQAYLALEA--GRVDAAMHDT 179 (249)
T ss_dssp GGTTSEEEEETTSHH-HHHHHHHC--CCSEEEEESSHHHHHHHHHT--TSSSEEEEEH
T ss_pred HhCCCEEEEeCCChH-HHHHHhcC--CCceEEEcCCHHHHHHHHHc--CCeeEEEeCc
Confidence 346678888876643 22333222 25788899999999999998 8999999985
No 247
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=29.78 E-value=52 Score=27.20 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCccchhhhhhhhhhCCC-ccceeeecc
Q 004184 732 RKKVRYQSRKRLAEQRPR-IRGQFVRQT 758 (770)
Q Consensus 732 ~k~iry~~rk~~a~~r~r-~~g~f~~~~ 758 (770)
.|+.-|+||-..|-.||| --|||....
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 567789999999999999 779998653
No 248
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=29.17 E-value=91 Score=29.34 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=41.7
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
+.+.+|.++.... ....+...+...++.+..+.+..+++++|.. .++|++++|.
T Consensus 109 L~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--G~vDa~~~~~ 162 (239)
T 1lst_A 109 LKGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTA--GRLDAALQDE 162 (239)
T ss_dssp HTTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred hCCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHc--CCCCEEEeCc
Confidence 4567887776554 4455666665557899999999999999988 8899999985
No 249
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=29.16 E-value=2.1e+02 Score=28.11 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=57.0
Q ss_pred HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh---------hhHhcCCC
Q 004184 108 RNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF---------KCLSKGAV 176 (770)
Q Consensus 108 e~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl---------~al~aGAd 176 (770)
+..|..+. -+.+..|+.+.++. ..|.|-+ . -+..-|++.++.|+.. .+.+|++.+ ..+.+|++
T Consensus 101 ~~~g~~~i~G~~t~~e~~~A~~~---Gad~v~~-fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~~~n~~~~l~aGa~ 174 (207)
T 2yw3_A 101 QARGVPYLPGVLTPTEVERALAL---GLSALKF-FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIKEEHLPHYAALPNL 174 (207)
T ss_dssp HHHTCCEEEEECSHHHHHHHHHT---TCCEEEE-TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCCGGGHHHHHTCSSB
T ss_pred HHhCCCEEecCCCHHHHHHHHHC---CCCEEEE-ecCccccCHHHHHHHHhh--CCCCcEEEeCCCCHHHHHHHHhCCCc
Confidence 33555444 57889999887763 4677766 3 2223388999999865 357898843 66788887
Q ss_pred cE-----EeCCCCHHHHHHHHHHHHHHh
Q 004184 177 DF-----LVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 177 dy-----L~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+ |.+ -+++++.+..+.++...
T Consensus 175 ~vavgSai~~-~d~~~i~~~a~~~~~~~ 201 (207)
T 2yw3_A 175 LAVGGSWLLQ-GNLEAVRAKVRAAKALL 201 (207)
T ss_dssp SCEEESGGGS-SCHHHHHHHHHHHHHHC
T ss_pred EEEEehhhhC-CCHHHHHHHHHHHHHHh
Confidence 64 344 56677888877777654
No 250
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=29.14 E-value=12 Score=42.93 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcccCCCCccchh
Q 004184 716 EAAVTKYRQKKTERCFRKKVRYQ 738 (770)
Q Consensus 716 ~~~~~r~~~kr~~r~~~k~iry~ 738 (770)
...|.||-+ +.....|.++-.
T Consensus 83 ~kl~s~~~~--~~~~lG~d~flT 103 (560)
T 3odm_A 83 SQIALGLIS--NGIIPGKDVRVT 103 (560)
T ss_dssp HHHHHHHHT--TTCCBTTTBEEE
T ss_pred HHHHHhhhh--cCCCCCCceEEe
Confidence 445677777 444445544433
No 251
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=29.08 E-value=1.6e+02 Score=31.75 Aligned_cols=90 Identities=17% Similarity=0.286 Sum_probs=53.4
Q ss_pred cEEEEEe----cChhhHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEccCCC------------CCHHH
Q 004184 88 LKVLLVE----NDDSTRHVVAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMPC------------LSGVA 149 (770)
Q Consensus 88 lrVLIVD----Dd~~~r~~L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMPg------------mdGle 149 (770)
..+++|+ +...+.+.++.+-+.++..|+ .+.+.++|..+++ ...|.|.+-.-|+ ...++
T Consensus 118 ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~---aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~ 194 (361)
T 3khj_A 118 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE---NGADGIKVGIGPGSICTTRIVAGVGVPQIT 194 (361)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH---TTCSEEEECSSCCTTCCHHHHTCBCCCHHH
T ss_pred cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH---cCcCEEEEecCCCcCCCcccccCCCCCcHH
Confidence 4456654 233445566666666677665 5788888877765 4578888732111 23455
Q ss_pred HHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 150 LLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 150 Llr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
++..+++......+||| +.+++.+||+.+..
T Consensus 195 ~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 195 AIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 55555432111257888 33778889888754
No 252
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=28.67 E-value=1.3e+02 Score=31.37 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=44.7
Q ss_pred cEEEEEecChhhHHHHHHHHHh--CC----CEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-CCH-------HHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRN--CG----YEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-LSG-------VALL 151 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~--~G----~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-mdG-------leLl 151 (770)
.+|..||-++...+..++.+.. .+ -.+. ...|+.+.+... ...||+||+|. .|. +++ .+++
T Consensus 102 ~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l 178 (314)
T 1uir_A 102 EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYDVVIIDLTDPVGEDNPARLLYTVEFY 178 (314)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEEEEEEECCCCBSTTCGGGGGSSHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---CCCccEEEECCCCcccccCcchhccHHHHH
Confidence 4799999999999998888764 22 1233 667777655432 36799999998 765 222 3556
Q ss_pred HHHHh
Q 004184 152 SKIMS 156 (770)
Q Consensus 152 r~IR~ 156 (770)
+.+++
T Consensus 179 ~~~~~ 183 (314)
T 1uir_A 179 RLVKA 183 (314)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 253
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=28.49 E-value=1.7e+02 Score=28.77 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCC-C-CHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPC-L-SGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPg-m-dGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||.+..+.. .+ +.++.+.. ..+|-||+-. ... . ...++++.++.. .+|||++
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~~~----~iPvV~~ 105 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLS--QHIDGLIVEPTKSALQTPNIGYYLNLEKN----GIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEECCSSTTSCCTTHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHH--CCCCEEEEecccccccCCcHHHHHHHHhc----CCCEEEE
Confidence 345566677788999886543 22 34555555 6789888754 322 1 235677777653 5788866
No 254
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=28.42 E-value=1.8e+02 Score=30.18 Aligned_cols=77 Identities=5% Similarity=-0.077 Sum_probs=50.2
Q ss_pred CcEEEEEecChh----hHHHHHHHHHhC--CCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHH
Q 004184 87 SLKVLLVENDDS----TRHVVAALLRNC--GYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSK 153 (770)
Q Consensus 87 ~lrVLIVDDd~~----~r~~L~~lLe~~--G~eV~~A-------~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~ 153 (770)
..+|.||-++.. ....++..|+.. |++++.. .+....+..++. ..+|+||+.. .+.+...+++.
T Consensus 142 ~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~--~~~d~v~~~~-~~~~~~~~~~~ 218 (387)
T 3i45_A 142 ITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQ--AEPEGLFNVL-FGADLPKFVRE 218 (387)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHH--TCCSEEEECC-CTTHHHHHHHH
T ss_pred CCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHh--CCCCEEEEcC-ccHHHHHHHHH
Confidence 356766654433 344566777776 7776521 356677777776 6799999875 22356778888
Q ss_pred HHhhcCCCCcchh
Q 004184 154 IMSHKTRKNLPVI 166 (770)
Q Consensus 154 IR~~~~~~~IPII 166 (770)
+++......++|+
T Consensus 219 ~~~~g~~~~~~i~ 231 (387)
T 3i45_A 219 GRVRGLFAGRQVV 231 (387)
T ss_dssp HHHHTSSTTCEEE
T ss_pred HHHcCCCCCCeEE
Confidence 8887654556665
No 255
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=28.33 E-value=56 Score=30.01 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=59.6
Q ss_pred CCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 85 LRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 85 ~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
+.++.|||==-++.+|.++..+|+.||..++..... . ....+||+|+|- |. . ..-+
T Consensus 5 LdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der------~--~~~eyDi~lTDn-p~------------~---~~~~ 60 (117)
T 2kx7_A 5 LDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER------L--ISQDYDIFLTDN-PS------------N---LTAS 60 (117)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS------S--SCCCCSEEEEES-GG------------G---CSSS
T ss_pred ccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc------C--CCCcccEEEecC-cc------------c---cCcC
Confidence 456788988899999999999999999888765421 1 136799999996 10 0 1112
Q ss_pred hhhhh----hHhcCCCcEEeCCCCH-HHHHHHHHHHHHHhh
Q 004184 165 VIIFK----CLSKGAVDFLVKPIRK-NELKNLWQHVWRRCH 200 (770)
Q Consensus 165 IIvl~----al~aGAddyL~KP~~~-eeL~~~L~~vlrr~~ 200 (770)
.|.+. .+..=...||.--|.. ++|..+|..++++.-
T Consensus 61 tLLL~~d~~G~~~l~p~~irvNyN~s~alidAIllLIEqql 101 (117)
T 2kx7_A 61 GLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQL 101 (117)
T ss_dssp EEEECTTCSSEEEEETTEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred eEEEecCcccccccCCCeEEEeccchHHHHHHHHHHHHHHH
Confidence 23222 2222234455556654 567788877777654
No 256
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.19 E-value=2.3e+02 Score=28.24 Aligned_cols=89 Identities=9% Similarity=0.076 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhh-H
Q 004184 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKC-L 171 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~a-l 171 (770)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. ... + ++++.++.. .+|||++.. .
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~--~~~~~l~~~----~iPvV~i~~~~ 116 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQS--KSVDGFILLYSLKD-D--PIEHLLNEF----KVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHT--TCCSEEEESSCBTT-C--HHHHHHHHT----TCCEEEESCCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCcCC-c--HHHHHHHHc----CCCEEEECCCC
Confidence 344555667789998866532 234555655 6789888754 322 1 566667543 578887632 2
Q ss_pred hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
......|+. .-.......++++++++
T Consensus 117 ~~~~~~~V~-~D~~~~g~~a~~~L~~~ 142 (305)
T 3huu_A 117 NYENIIHID-NDNIDAAYQLTQYLYHL 142 (305)
T ss_dssp SSTTCCEEE-CCHHHHHHHHHHHHHHT
T ss_pred cccCCcEEE-eCHHHHHHHHHHHHHHC
Confidence 222233332 22334444555555554
No 257
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=28.09 E-value=74 Score=33.39 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=37.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~--G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
..+|..||-++...+..++.+... ++ +|. ...++.+.+.. ....||+||+|. .|
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 358999999999999999888653 22 343 56677665543 236799999998 55
No 258
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=27.88 E-value=13 Score=39.75 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.8
Q ss_pred cchhhhh
Q 004184 735 VRYQSRK 741 (770)
Q Consensus 735 iry~~rk 741 (770)
|+|+.+|
T Consensus 161 l~yAv~~ 167 (315)
T 1uoz_A 161 VRYAVDT 167 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 259
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=27.82 E-value=2.4e+02 Score=29.75 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=21.9
Q ss_pred hhhhHhcCCCcEEeCCC--CHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPI--RKNELKNLWQHV 195 (770)
Q Consensus 167 vl~al~aGAddyL~KP~--~~eeL~~~L~~v 195 (770)
++.|+++|..=|+-||+ +.++..+++..+
T Consensus 105 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a 135 (361)
T 3u3x_A 105 AIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQ 135 (361)
T ss_dssp HHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 34889999999999997 566766665544
No 260
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=27.75 E-value=95 Score=31.64 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=43.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCC-----HHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLS-----GVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~--G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmd-----GleLlr~IR 155 (770)
.+|.+||-++...+..++.|... ++ ++. ...|+.+.+.. ....||+||+|. .|... ..++++.++
T Consensus 100 ~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~ 176 (275)
T 1iy9_A 100 KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK---SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIA 176 (275)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT---CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh---CCCCeeEEEECCCCCCCcchhhhHHHHHHHHH
Confidence 48999999999999998887531 22 233 56677665432 236799999998 65321 235555554
Q ss_pred h
Q 004184 156 S 156 (770)
Q Consensus 156 ~ 156 (770)
+
T Consensus 177 ~ 177 (275)
T 1iy9_A 177 K 177 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 261
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=27.48 E-value=13 Score=40.92 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=0.0
Q ss_pred cccccccccccccc
Q 004184 599 HYDNCHHLVHNMQQ 612 (770)
Q Consensus 599 ~~~~~~~~~h~~~~ 612 (770)
||||||||+|.+.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (389)
T 3a5i_A 3 HHHHHHHHHHSSGH 16 (389)
T ss_dssp --------------
T ss_pred ccccccccccccCC
No 262
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=27.24 E-value=13 Score=38.23 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=0.0
Q ss_pred ccccccc
Q 004184 605 HLVHNMQ 611 (770)
Q Consensus 605 ~~~h~~~ 611 (770)
||+|.++
T Consensus 9 ~~~~~~~ 15 (286)
T 1jr2_A 9 HHHHSSG 15 (286)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3334443
No 263
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=27.24 E-value=1.5e+02 Score=29.91 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY-EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~-eV~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+.+|-++...+.++..++..|+ .+. ...+..+....+......||+||+|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999998886 343 56677665543321126799999996
No 264
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=27.09 E-value=1.1e+02 Score=30.34 Aligned_cols=54 Identities=24% Similarity=0.126 Sum_probs=37.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC----EEE-EECCHHHH--------------HHHHH----hc--CCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY----EVT-EATNGLQA--------------WKILE----DL--TNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~----eV~-~A~dg~EA--------------Le~L~----~~--~~~pDLVLlDi 141 (770)
-+|.-||.|+...+..+..|+..|+ .|. ...+..++ +..+. .. ...||+||+|-
T Consensus 52 g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 52 KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 4799999999999999999999886 453 44443222 22111 11 25799999997
No 265
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=27.09 E-value=1.6e+02 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=25.7
Q ss_pred Ccchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 162 NLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 162 ~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+|||+. ..++.| .+++..| +.++|.++|..++.
T Consensus 301 G~PvI~~~~~~~~~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 301 GKPVLVMRDTTERPEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp TCCEEEESSCCSCHHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred CCCEEEccCCCCcchhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 4566633 335667 8899988 99999999998875
No 266
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=26.92 E-value=90 Score=30.96 Aligned_cols=105 Identities=20% Similarity=0.213 Sum_probs=61.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~I 163 (770)
.+|..||-++......+..++..|+. |. ...+..+.+..+.. ...||+||+|. .+. -..+++.+...- .+.-
T Consensus 89 ~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~~--~~~~l~~~~~~L-kpGG 164 (248)
T 3tfw_A 89 GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKPN--NPHYLRWALRYS-RPGT 164 (248)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGGG--HHHHHHHHHHTC-CTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchHH--HHHHHHHHHHhc-CCCe
Confidence 47999999999999999999988763 44 66777766554421 23799999998 443 234555554332 2333
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.+|+-..+..| .+..|-........++.+++..
T Consensus 165 ~lv~~~~~~~g---~v~~~~~~~~~~~~~~~~~~~l 197 (248)
T 3tfw_A 165 LIIGDNVVRDG---EVVNPQSADERVQGVRQFIEMM 197 (248)
T ss_dssp EEEEECCSGGG---GGGCTTCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCC---cccCccccchHHHHHHHHHHHH
Confidence 33322222222 1222333344555555555544
No 267
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=26.86 E-value=32 Score=35.25 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=47.2
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEcc---CCCCCHHHHHHHHHhhcCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYE--VTEATNGLQAWKILEDLTNHIDLVLTEV---MPCLSGVALLSKIMSHKTR 160 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~~A~dg~EALe~L~~~~~~pDLVLlDi---MPgmdGleLlr~IR~~~~~ 160 (770)
.+++|+|+--....|.. ..++...|+. ...+.+..++++.+ ..+|+|++|= +++ -.++++.+..
T Consensus 46 ~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~----~~~dvViIDEaQF~~~--v~el~~~l~~---- 114 (234)
T 2orv_A 46 AQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEA----LGVAVIGIDEGQFFPD--IVEFCEAMAN---- 114 (234)
T ss_dssp TTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH----TTCSEEEESSGGGCTT--HHHHHHHHHH----
T ss_pred CCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHh----ccCCEEEEEchhhhhh--HHHHHHHHHh----
Confidence 56788888644444433 3444445544 33566777777766 3489999995 443 6677777765
Q ss_pred CCcchhhhhhHhcCCC-cEEeCCCCH
Q 004184 161 KNLPVIIFKCLSKGAV-DFLVKPIRK 185 (770)
Q Consensus 161 ~~IPIIvl~al~aGAd-dyL~KP~~~ 185 (770)
..++||+ .|-+ ||..+||..
T Consensus 115 ~gi~VI~-----~GL~~DF~~~~F~~ 135 (234)
T 2orv_A 115 AGKTVIV-----AALDGTFQRKPFGA 135 (234)
T ss_dssp TTCEEEE-----ECCSBCTTSSBCTT
T ss_pred CCCEEEE-----EecccccccCCccc
Confidence 3567775 3433 677777754
No 268
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=26.72 E-value=64 Score=33.59 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCcEEEEEecCh---hhHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEcc
Q 004184 86 RSLKVLLVENDD---STRHVVAALLRNCGYEVTEAT---NGL----QAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 86 ~~lrVLIVDDd~---~~r~~L~~lLe~~G~eV~~A~---dg~----EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+|+++|-|. .....+..+.+..|+.+.... +.. ++++.++. ..||+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 456899999883 344445555556677776542 333 45555543 5799999998
No 269
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.37 E-value=19 Score=35.38 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=48.8
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEcc--CCCCCHHHHHHHHHhhcCCC
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEV--TEATNGLQAWKILEDLTNHIDLVLTEV--MPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV--~~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmdGleLlr~IR~~~~~~ 161 (770)
.+++|+|+--....+.....++...|..+ ..+.+..+.++.+. ..+|+||+|= .-..+-+++++.|.. .
T Consensus 35 ~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~---~~~dvViIDEaqfl~~~~v~~l~~l~~----~ 107 (191)
T 1xx6_A 35 AKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE---EDTEVIAIDEVQFFDDEIVEIVNKIAE----S 107 (191)
T ss_dssp TTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC---TTCSEEEECSGGGSCTHHHHHHHHHHH----T
T ss_pred CCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh---ccCCEEEEECCCCCCHHHHHHHHHHHh----C
Confidence 45678888533223332223344456543 35566666666553 3589999995 212223667776643 2
Q ss_pred CcchhhhhhHhcCCCcEEeCCCCHH
Q 004184 162 NLPVIIFKCLSKGAVDFLVKPIRKN 186 (770)
Q Consensus 162 ~IPIIvl~al~aGAddyL~KP~~~e 186 (770)
.++||+. .++. ||-.+||...
T Consensus 108 ~~~Vi~~-Gl~~---df~~~~F~~~ 128 (191)
T 1xx6_A 108 GRRVICA-GLDM---DFRGKPFGPI 128 (191)
T ss_dssp TCEEEEE-ECSB---CTTSCBCTTH
T ss_pred CCEEEEE-eccc---ccccCcCccH
Confidence 5777753 3332 7888888653
No 270
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=26.31 E-value=14 Score=40.84 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=0.0
Q ss_pred ccccccccccc
Q 004184 598 QHYDNCHHLVH 608 (770)
Q Consensus 598 ~~~~~~~~~~h 608 (770)
+||||||||+|
T Consensus 498 ~~~~~~~~~~~ 508 (510)
T 4grv_A 498 AHHHHHHHHHH 508 (510)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444433
No 271
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=26.20 E-value=1.4e+02 Score=31.91 Aligned_cols=54 Identities=7% Similarity=0.141 Sum_probs=42.9
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+-||-++...+.++.-++..|+ .+. ...+..+.+..+......||+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999999988877 454 77788887765542235799999996
No 272
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=26.16 E-value=72 Score=33.24 Aligned_cols=86 Identities=10% Similarity=0.142 Sum_probs=56.5
Q ss_pred EEEEecCh-hhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 90 VLLVENDD-STRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 90 VLIVDDd~-~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+-|+|-++ ...+.+...++++|+.+..+.+.+++|+. ..+|+|++-. |.. . + .-+++
T Consensus 28 vav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~vD~V~I~t-p~~--------~--H------~~~~~ 85 (337)
T 3ip3_A 28 TGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEK-----EKPDILVINT-VFS--------L--N------GKILL 85 (337)
T ss_dssp EEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHH-----HCCSEEEECS-SHH--------H--H------HHHHH
T ss_pred EEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcC-----CCCCEEEEeC-Ccc--------h--H------HHHHH
Confidence 44667666 46667777887777756677888877653 3589988743 210 0 1 12345
Q ss_pred hhHhcCCCcEEeCCCC--HHHHHHHHHHHHH
Q 004184 169 KCLSKGAVDFLVKPIR--KNELKNLWQHVWR 197 (770)
Q Consensus 169 ~al~aGAddyL~KP~~--~eeL~~~L~~vlr 197 (770)
.|+++|..=|+-||+. .++..+++..+-+
T Consensus 86 ~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 86 EALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7888898889999985 4577666655443
No 273
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=26.07 E-value=14 Score=43.76 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=5.5
Q ss_pred CCCCCcccc
Q 004184 556 SSFQPTKND 564 (770)
Q Consensus 556 saf~p~~~~ 564 (770)
.=|.||++.
T Consensus 694 ~lFe~V~~~ 702 (724)
T 3rce_A 694 DLFEQVTND 702 (724)
T ss_dssp TTCCEEEEE
T ss_pred hhhhhhhcC
Confidence 367776655
No 274
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=26.02 E-value=14 Score=36.21 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 004184 719 VTKYRQK 725 (770)
Q Consensus 719 ~~r~~~k 725 (770)
++|+|+|
T Consensus 117 iNklk~~ 123 (174)
T 2oar_A 117 YNTLRKK 123 (174)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 3444433
No 275
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=26.01 E-value=2.5e+02 Score=27.73 Aligned_cols=61 Identities=18% Similarity=0.040 Sum_probs=38.3
Q ss_pred hHHHHHHHHHhCCCEEEEECCH------HH---HHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATNG------LQ---AWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg------~E---ALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||.+..+... .+ .++.+.. ..+|-||+-. .+. .+.++.++.. .+|||++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~l~~~----~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIG--RDCDGVVVISHDLH---DEDLDELHRM----HPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHH--TTCSEEEECCSSSC---HHHHHHHHHH----CSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHh--cCccEEEEecCCCC---HHHHHHHhhc----CCCEEEE
Confidence 3445566677889998865431 23 5666665 6789888754 322 3566666543 5788866
No 276
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=25.86 E-value=49 Score=33.91 Aligned_cols=62 Identities=21% Similarity=0.339 Sum_probs=40.9
Q ss_pred CCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCcchhhh----------------hhHh
Q 004184 132 NHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIIF----------------KCLS 172 (770)
Q Consensus 132 ~~pDLVLlDi-M--PgmdG--------------------leLlr~IR~~~~~~~IPIIvl----------------~al~ 172 (770)
...|+|.+++ . |-+|| +++++.||+.. ..+||+++ .+.+
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~ 120 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQ 120 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHH
Confidence 4578888887 4 44554 35577777652 35676532 3677
Q ss_pred cCCCcEEeCCCCHHHHHHHHHHH
Q 004184 173 KGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 173 aGAddyL~KP~~~eeL~~~L~~v 195 (770)
+|++.++.-.+..+++...+..+
T Consensus 121 aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 121 VGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HTCCEEEETTCCGGGCHHHHHHH
T ss_pred cCCCEEEEcCCCHHHHHHHHHHH
Confidence 89999999888777665555443
No 277
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=25.75 E-value=1.3e+02 Score=32.15 Aligned_cols=54 Identities=9% Similarity=0.106 Sum_probs=42.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+-||-++...+..+.-++..|+. +. ...+..+.+..+......||+||+|.
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 37999999999999999988877763 43 77888887766543235799999997
No 278
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=25.65 E-value=95 Score=30.33 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=46.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHH-HHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWK-ILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe-~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
.+|+.||-++......+..++..|+ .|. ...+..+.+. .+ . ..||+||+|. .+. -..+++.+..
T Consensus 96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~--~~fD~V~~~~~~~~--~~~~l~~~~~ 164 (232)
T 3ntv_A 96 IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-D--KVYDMIFIDAAKAQ--SKKFFEIYTP 164 (232)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-T--SCEEEEEEETTSSS--HHHHHHHHGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-c--CCccEEEEcCcHHH--HHHHHHHHHH
Confidence 4799999999999999999998875 343 6677766655 44 3 6799999997 544 2345555543
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.55 E-value=60 Score=35.85 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=34.2
Q ss_pred CcEEEEEecCh---hhHHHHHHHHHhCCCEEEEECC---H----HHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDD---STRHVVAALLRNCGYEVTEATN---G----LQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~---~~r~~L~~lLe~~G~eV~~A~d---g----~EALe~L~~~~~~pDLVLlDi 141 (770)
+.+|||||-|+ .....+..+-...|+.++.+.. . .++++.+.. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67999999996 3333444444455777765432 2 334555553 5799999998
No 280
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.51 E-value=2e+02 Score=28.27 Aligned_cols=89 Identities=8% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 100 RHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
...+...+++.||.+..+... .+.++.+.. ..+|-||+-. ... + ++++.++.. .+|||++....
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~vdgiIi~~~~~~-~--~~~~~l~~~----~iPvV~~~~~~ 102 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQG--RQIGGIILLYSREN-D--RIIQYLHEQ----NFPFVLIGKPY 102 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHT--TCCCEEEESCCBTT-C--HHHHHHHHT----TCCEEEESCCS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEeCCCCC-h--HHHHHHHHC----CCCEEEECCCC
Confidence 445566677889998865432 234555554 6789888743 222 1 566666543 57888763322
Q ss_pred cCC--CcEEeCCCCHHHHHHHHHHHHHH
Q 004184 173 KGA--VDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 173 aGA--ddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.+. ..|+. .-.......+.+.++++
T Consensus 103 ~~~~~~~~V~-~D~~~~g~~a~~~L~~~ 129 (292)
T 3k4h_A 103 DRKDEITYVD-NDNYTAAREVAEYLISL 129 (292)
T ss_dssp SCTTTSCEEE-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEE-ECcHHHHHHHHHHHHHC
Confidence 221 33333 22233444455555543
No 281
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=25.49 E-value=1.6e+02 Score=27.25 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=58.9
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCC
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRK 161 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~ 161 (770)
.+.+.+|.++.... ...+|...+ ..++.+.+..+++++|.. .++|++++|. ..+...++... ..
T Consensus 114 dL~g~~i~~~~g~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~------~~~~~~~~~~~-~~ 179 (234)
T 3h7m_A 114 DLRGRKVALHRDGI-----MHEYLAERGYGKDLVLTPTPADALRLLAA--GGCDYAVVAM------VPGMYIIRENR-LT 179 (234)
T ss_dssp GGTTSCEEEETTSH-----HHHHHHTTTCGGGEEEESSHHHHHHHHHT--TSSSEEEEEH------HHHHHHHHHTT-CT
T ss_pred HhCCCEEEEEeCch-----HHHHHHhcCCCceEEEeCCHHHHHHHHHc--CCceEEEecc------HHHHHHHHhcC-CC
Confidence 44667888887653 344555554 578899999999999988 8999999985 22223333332 12
Q ss_pred CcchhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHhh
Q 004184 162 NLPVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCH 200 (770)
Q Consensus 162 ~IPIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~~ 200 (770)
.+.++. ..+...-..+...+- ..+|...|.+++....
T Consensus 180 ~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~l~ 216 (234)
T 3h7m_A 180 NLVPVA-RSIAAQRYGYAVRQG-DAELLARFSEGLAILR 216 (234)
T ss_dssp TEEEEE-EEEEEEEEEEEEETT-CHHHHHHHHHHHHHHH
T ss_pred ceEEec-cccCCCceEEEEeCC-CHHHHHHHHHHHHHHH
Confidence 222221 111111112222222 3678888888887654
No 282
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=25.39 E-value=55 Score=36.31 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=56.9
Q ss_pred ecChhhHHHHHHHHHhCCC--EEE----EEC------------------------CHHHHHHHHHhcCCCceEEEEcc-C
Q 004184 94 ENDDSTRHVVAALLRNCGY--EVT----EAT------------------------NGLQAWKILEDLTNHIDLVLTEV-M 142 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~--eV~----~A~------------------------dg~EALe~L~~~~~~pDLVLlDi-M 142 (770)
+++....+.+++.++..|| +|. .+. +..++++++...-..|+|+++.- +
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4556667777888876665 322 210 45777766543223588999988 8
Q ss_pred CCCCHHHHHHHHHhhcCCCCcchh-----------hhhhHhcCCCc-EEeCCCCHHHHHHH
Q 004184 143 PCLSGVALLSKIMSHKTRKNLPVI-----------IFKCLSKGAVD-FLVKPIRKNELKNL 191 (770)
Q Consensus 143 PgmdGleLlr~IR~~~~~~~IPII-----------vl~al~aGAdd-yL~KP~~~eeL~~~ 191 (770)
+..| ++-.++|++. ..+||+ +.++++.++.+ +++|+-..--|.++
T Consensus 299 ~~dD-~~g~~~l~~~---~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea 355 (436)
T 2al1_A 299 AEDD-WEAWSHFFKT---AGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSES 355 (436)
T ss_dssp CTTC-HHHHHHHHTT---CCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHH
T ss_pred CCcC-HHHHHHHHhc---CCCeEEECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHH
Confidence 7655 6667777764 357776 22567777655 56677544334333
No 283
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=25.34 E-value=76 Score=33.67 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=39.3
Q ss_pred CcEEEEEecChhhHHHHHHHHHhC--CC---EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNC--GY---EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~--G~---eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
..+|..||-++...+..+..+... |+ .|. ...++.+.+..+.. ..||+||+|. .|.
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~--~~fDlIi~d~~~p~ 206 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE--GSYDAVIVDSSDPI 206 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT--TCEEEEEECCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccC--CCccEEEECCCCcc
Confidence 358999999999999998887642 22 233 56677665443322 5799999998 554
No 284
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=25.30 E-value=76 Score=31.31 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=40.5
Q ss_pred EEEEEecChhhHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
+|.+||-++...+.+++..+..+..+. ...+.++.+..+.. ..||+|+.|.
T Consensus 85 ~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~FD~i~~D~ 136 (236)
T 3orh_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPD--GHFDGILYDT 136 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCT--TCEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccc--cCCceEEEee
Confidence 688999999999999998888887665 56677666555544 6799999997
No 285
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=25.21 E-value=55 Score=31.78 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-------HHHHHHHHhhc--CCCCcchh
Q 004184 100 RHVVAALLRNCGYEVT-EA--TNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-------VALLSKIMSHK--TRKNLPVI 166 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~-~A--~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-------leLlr~IR~~~--~~~~IPII 166 (770)
...+.+.++..|..+. .+ .+..++++.+. ...|.|+++. .|+.+| ++.++.||+.. ....+||+
T Consensus 98 ~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 174 (220)
T 2fli_A 98 IHGALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIE 174 (220)
T ss_dssp HHHHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 3344455555677665 33 33344444433 3478998887 776554 24455565432 11256765
Q ss_pred hh---------hhHhcCCCcEE-----eCCCCHHHHHHHHH
Q 004184 167 IF---------KCLSKGAVDFL-----VKPIRKNELKNLWQ 193 (770)
Q Consensus 167 vl---------~al~aGAddyL-----~KP~~~eeL~~~L~ 193 (770)
+. +++++|++.++ .+..++.+....|.
T Consensus 175 v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~ 215 (220)
T 2fli_A 175 VDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215 (220)
T ss_dssp EESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred EECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 32 66777998864 34445544444443
No 286
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=25.11 E-value=1.1e+02 Score=30.30 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||.+..+.. . .+.++.+.. ..+|-||+-. .+ ..++++.++. ..+|+|++
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~ 93 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFE--RRVDGLILAPSEG---EHDYLRTELP----KTFPIVAV 93 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCSS---CCHHHHHSSC----TTSCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEeCCCC---ChHHHHHhhc----cCCCEEEE
Confidence 44566667788999886553 2 235555655 6789888754 33 2245555533 46888866
No 287
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=25.08 E-value=15 Score=37.18 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=4.3
Q ss_pred HHHHHHhhcc
Q 004184 719 VTKYRQKKTE 728 (770)
Q Consensus 719 ~~r~~~kr~~ 728 (770)
+.++|++=|+
T Consensus 176 ~~~~R~~vk~ 185 (223)
T 3dfz_A 176 LYECRVLIHR 185 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 288
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=25.07 E-value=33 Score=30.67 Aligned_cols=35 Identities=3% Similarity=-0.231 Sum_probs=25.2
Q ss_pred cchhhHHHHHHHHhCCccccCCccCccccccccceeeecccc
Q 004184 24 RDENAVVGEQQHLVGDDRLNDSSIAEDVKDGCEGAVTASAVL 65 (770)
Q Consensus 24 ~~~~AIv~~Lv~LmGG~i~v~S~ig~~S~~G~g~~ftv~lp~ 65 (770)
.-...|++++++.|||.+.+.+..+ . ++|++.+|.
T Consensus 124 GlGL~i~~~~~~~~gG~l~i~s~~~------~-~~~~i~lP~ 158 (160)
T 1r62_A 124 GLGLSIARNLIDQHSGKIEFTSWPG------H-TEFSVYLPI 158 (160)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEETT------E-EEEEEEEEE
T ss_pred ccCHHHHHHHHHHCCCeEEEEeCCC------C-EEEEEEEec
Confidence 3447899999999999988866543 3 556665553
No 289
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=25.02 E-value=2.4e+02 Score=30.46 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=50.5
Q ss_pred CcEEEEEecC----hhhHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHhcCCCceEEEEccCCCC------------CH
Q 004184 87 SLKVLLVEND----DSTRHVVAALLRNC-GYEVTE--ATNGLQAWKILEDLTNHIDLVLTEVMPCL------------SG 147 (770)
Q Consensus 87 ~lrVLIVDDd----~~~r~~L~~lLe~~-G~eV~~--A~dg~EALe~L~~~~~~pDLVLlDiMPgm------------dG 147 (770)
+..++.||-. ..+.+.++.+-+.+ +..|+. +.+.++|..+++ ...|.|++..-|+. .-
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~---aGaD~I~Vg~g~G~~~~tr~~~g~g~p~ 188 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLAS---CGADIIKAGIGGGSVCSTRIKTGFGVPM 188 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH---TTCSEEEECCSSSSCHHHHHHHCCCCCH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHH---cCCCEEEEcCCCCcCccccccCCccHHH
Confidence 4568888632 23334444443333 566664 789999888776 45898888543432 22
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
++++..+... .. ||| +.+++.+||+.+..
T Consensus 189 l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 189 LTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3344444322 11 777 34788889887654
No 290
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=25.01 E-value=2.7e+02 Score=28.88 Aligned_cols=72 Identities=24% Similarity=0.248 Sum_probs=48.7
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCC-------CCHHHHHHHHHhhcCCCCcchhh------
Q 004184 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPC-------LSGVALLSKIMSHKTRKNLPVII------ 167 (770)
Q Consensus 103 L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPg-------mdGleLlr~IR~~~~~~~IPIIv------ 167 (770)
+...|+..|..+. .+.+.++|..... ...|.|+++- -++ ...+++++++++. ..+|||+
T Consensus 110 ~~~~l~~~gi~vi~~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~ 183 (328)
T 2gjl_A 110 HIAEFRRHGVKVIHKCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFAD 183 (328)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCS
T ss_pred HHHHHHHcCCCEEeeCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCC
Confidence 3445566687766 5788888877665 4579888864 322 2467888888754 3688883
Q ss_pred ----hhhHhcCCCcEEe
Q 004184 168 ----FKCLSKGAVDFLV 180 (770)
Q Consensus 168 ----l~al~aGAddyL~ 180 (770)
.+++..||+.+..
T Consensus 184 ~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 184 GRGLVAALALGADAINM 200 (328)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 3667788888764
No 291
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.97 E-value=1e+02 Score=32.45 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=46.6
Q ss_pred cEEEEEecChh----hHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDS----TRHVVAALLRNCGYEVTEA-------TNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~----~r~~L~~lLe~~G~eV~~A-------~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~ 156 (770)
.+|.||-++.. ..+.++..|+..|++|+.. .+....+..|+. ..+|+||+......+...+++.+++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~--~~~d~v~~~~~~~~~~~~~~~~~~~ 242 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRA--DPPAVIVVTHFYPQDQALFMNQFMT 242 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHH--SCCSEEEECCCCHHHHHHHHHHHTT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHh--cCCCEEEEccccCchHHHHHHHHHH
Confidence 46655544443 3445566666778887632 356777888877 6799999864211235667888876
Q ss_pred hcCCCCcchh
Q 004184 157 HKTRKNLPVI 166 (770)
Q Consensus 157 ~~~~~~IPII 166 (770)
... ..+++
T Consensus 243 ~g~--~~~~~ 250 (419)
T 3h5l_A 243 DPT--NSLVY 250 (419)
T ss_dssp SCC--SCEEE
T ss_pred cCC--CceEE
Confidence 653 44444
No 292
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=24.94 E-value=3.1e+02 Score=28.46 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=49.1
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh----------hhh
Q 004184 103 VAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI----------IFK 169 (770)
Q Consensus 103 L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII----------vl~ 169 (770)
|++.|+.-. +.+..-.+..+.++.+.. ..+|.||+|+ -...+--++...++..... ..+++ +..
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~-~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIAPY-PSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHTTS-SSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHHhc-CCCEEEEECCCCHHHHHH
Confidence 566665432 223333445566677765 6799999999 3334444455555443322 33333 336
Q ss_pred hHhcCCCcEEe-CCCCHHHHHHHHH
Q 004184 170 CLSKGAVDFLV-KPIRKNELKNLWQ 193 (770)
Q Consensus 170 al~aGAddyL~-KP~~~eeL~~~L~ 193 (770)
+++.|++.+++ |--+.+++..++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~ 131 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVR 131 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 78889887544 4446777555543
No 293
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=24.93 E-value=1.5e+02 Score=31.50 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=42.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYE-V-TEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~e-V-~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
..+|+.||-++...+.++.-++..|+. + ....+..+.+..+......||+||+|.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 347999999999999999988877763 3 367788887765543236799999996
No 294
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=24.60 E-value=3.4e+02 Score=26.36 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=37.8
Q ss_pred hHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||++..+.. . .+.++.+.. ..+|.||+-. .. +. +.++.+++. ..+|+|++
T Consensus 39 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~--~~-~~~~~l~~~---~~iPvV~~ 107 (296)
T 3brq_A 39 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPRFL--SV-DEIDDIIDA---HSQPIMVL 107 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHH--TTCSEEEEECSSS--CH-HHHHHHHHT---CSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEEecCCC--Ch-HHHHHHHhc---CCCCEEEE
Confidence 445566677788999886653 2 234555555 6788877754 22 22 455666541 35788866
No 295
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=24.54 E-value=16 Score=39.90 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.7
Q ss_pred HHHHHHHhhcccC
Q 004184 718 AVTKYRQKKTERC 730 (770)
Q Consensus 718 ~~~r~~~kr~~r~ 730 (770)
.|++|=+++-+-+
T Consensus 160 ~IN~WV~~~T~gk 172 (395)
T 3b9f_I 160 QINDYVAKQTKGK 172 (395)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCCc
Confidence 3566655554433
No 296
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=24.54 E-value=1e+02 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=39.1
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCC
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPC 144 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPg 144 (770)
|+|||.--.-.+-..|...|...|++|+.+.-..+.+..+.. ..+.++..|+ -+.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~ 56 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLT 56 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEeccccccc
Confidence 478999888888777777777789999855444444454443 5678888888 554
No 297
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=24.53 E-value=98 Score=31.21 Aligned_cols=45 Identities=18% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCcchhhh------------hhHhcCCCcEEeCCCCHHHHHHHHHH
Q 004184 147 GVALLSKIMSHKTRKNLPVIIF------------KCLSKGAVDFLVKPIRKNELKNLWQH 194 (770)
Q Consensus 147 GleLlr~IR~~~~~~~IPIIvl------------~al~aGAddyL~KP~~~eeL~~~L~~ 194 (770)
++++++.||+. .++||+++ .+.++|++.++.-....+++...+..
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecCcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 45667777764 35777643 27889999998866555555544443
No 298
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=24.45 E-value=16 Score=36.37 Aligned_cols=8 Identities=0% Similarity=0.069 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 004184 717 AAVTKYRQ 724 (770)
Q Consensus 717 ~~~~r~~~ 724 (770)
..+..|++
T Consensus 126 ~l~~~~~~ 133 (236)
T 2px7_A 126 RVLEAAQR 133 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33344443
No 299
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=24.37 E-value=1.4e+02 Score=29.36 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhCCCEEEEECCH------HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 99 TRHVVAALLRNCGYEVTEATNG------LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~dg------~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
+...+...+++.||++..+... .+.++.+.. ..+|.||+-........++++.+++ ..+|||++....
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~----~~iPvV~~~~~~ 96 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIA--QKPDAIIEQLGNLDVLNPWLQKIND----AGIPLFTVDTAT 96 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--HCCSEEEEESSCHHHHHHHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChhhhHHHHHHHHH----CCCcEEEecCCC
Confidence 3455666777889998865432 345555555 5688888753110112345666654 368888763222
Q ss_pred cCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 173 KGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 173 aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+...|+. .-....-..+.+.+++
T Consensus 97 ~~~~~~V~-~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 97 PHAINNTT-SNNYSIGAELALQMVA 120 (291)
T ss_dssp TTCSEEEE-ECHHHHHHHHHHHHHH
T ss_pred CCcCceEe-cChHHHHHHHHHHHHH
Confidence 22233332 2223334444555555
No 300
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=24.34 E-value=2.5e+02 Score=33.58 Aligned_cols=104 Identities=11% Similarity=0.255 Sum_probs=66.8
Q ss_pred cEEEEEecCh----------hhHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHHhcCCCceEEEEccCCCCCHHH
Q 004184 88 LKVLLVENDD----------STRHVVAALLRNCGY--EVTEAT---N---GLQAWKILEDLTNHIDLVLTEVMPCLSGVA 149 (770)
Q Consensus 88 lrVLIVDDd~----------~~r~~L~~lLe~~G~--eV~~A~---d---g~EALe~L~~~~~~pDLVLlDiMPgmdGle 149 (770)
++++||-+.+ .....+..+++..+. .|.... + ..+...++.. ..|++++=...+.-|+.
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~~Egfglv 680 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPALYEAFGLT 680 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCSCBSSCHH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCCccCccHH
Confidence 4677777666 245666677776664 344433 2 2445555542 24666654333445677
Q ss_pred HHHHHHhhcCCCCcchhhh------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 150 LLSKIMSHKTRKNLPVIIF------KCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 150 Llr~IR~~~~~~~IPIIvl------~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
+++.+. ..+|||+. ..+..|..+++..|.+.++|.++|..++.+.
T Consensus 681 llEAMA-----~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~L 731 (816)
T 3s28_A 681 VVEAMT-----CGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKC 731 (816)
T ss_dssp HHHHHH-----TTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHh
Confidence 777764 35688743 4456788999999999999999998887543
No 301
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=24.29 E-value=16 Score=41.37 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=4.7
Q ss_pred HHHHHHHh
Q 004184 718 AVTKYRQK 725 (770)
Q Consensus 718 ~~~r~~~k 725 (770)
.+.+|++.
T Consensus 141 ~~~~~~~~ 148 (514)
T 2r9r_B 141 AMEMFRED 148 (514)
T ss_dssp HHHHHHHH
T ss_pred HHhhhhhh
Confidence 45667654
No 302
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=24.26 E-value=1.7e+02 Score=27.20 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=39.9
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+.+|.++...... .+|...++.+..+.+..+++++|.. ..+|+++++.
T Consensus 113 dL~g~~v~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~~~~~ 163 (233)
T 1ii5_A 113 DLKNKEVAVVRDTTAV-----DWANFYQADVRETNNLTAAITLLQK--KQVEAVMFDR 163 (233)
T ss_dssp GGTTCEEEEETTSHHH-----HHHHHTTCEEEEESSHHHHHHHHHT--TSCSEEEEEH
T ss_pred HhCCCeEEEECCccHH-----HHHHHcCCCeEEcCCHHHHHHHHHc--CCccEEEeCH
Confidence 4566788887766442 3444558899999999999999988 8899999985
No 303
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=24.23 E-value=78 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlD 140 (770)
.+.+|||||....+...|..+|+..|+.+.++..... ... ..+|.||+-
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~~~--~~~DgIIls 493 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----VDL--ARYDVVVMG 493 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----CCG--GGCSEEEEC
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----ccc--cCCCEEEEC
Confidence 4578999999999999999999999998876543221 111 357888883
No 304
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.13 E-value=1.2e+02 Score=29.95 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=49.6
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhhHh
Q 004184 100 RHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKCLS 172 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~al~ 172 (770)
...+...+++.||.+..+.. .. +.++.+.. ..+|.||+-. -+. .-.++++.+++. .+|||++....
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~-~~~~~~~~~~~~----~iPvV~~~~~~ 99 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVH--LKVDAIFITTLDDV-YIGSAIEEAKKA----GIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHH--TTCSEEEEECSCTT-TTHHHHHHHHHT----TCCEEEESSCC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEecCChH-HHHHHHHHHHHc----CCCEEEecCCC
Confidence 44466667788999886543 22 45555655 6789888754 222 223567777653 58888763322
Q ss_pred cC--CCcEEeCCCCHHHHHHHHHHHHH
Q 004184 173 KG--AVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 173 aG--AddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+ ...|+. .-....-..+.+.+++
T Consensus 100 ~~~~~~~~V~-~D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 100 RSDAVVSSIT-SNNQMIGEQLASYIKN 125 (293)
T ss_dssp CCTTCSEEEE-ECHHHHHHHHHHHHHH
T ss_pred CCCcceeEEe-cCHHHHHHHHHHHHHH
Confidence 22 233333 2233444445555555
No 305
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=24.04 E-value=16 Score=36.27 Aligned_cols=9 Identities=0% Similarity=0.109 Sum_probs=4.9
Q ss_pred HHHHHHHhh
Q 004184 718 AVTKYRQKK 726 (770)
Q Consensus 718 ~~~r~~~kr 726 (770)
.+.+|.++.
T Consensus 103 ~~~~~~~~~ 111 (221)
T 2c0d_A 103 SHLAWKNMP 111 (221)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHHh
Confidence 455565554
No 306
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=23.92 E-value=4.4e+02 Score=26.58 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||.+..+.. .+ +.++.+.. ..+|-||+-.. ..+...+.+.++. ..+|+|++
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~-~~~~~~~~~~~~~----~~iPvV~~ 149 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLD--LRCDAIMIYPR-FLSVDEIDDIIDA----HSQPIMVL 149 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHH--TTCSEEEECCS-SSCHHHHHHHHHH----CSSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCC-CCChHHHHHHHHc----CCCCEEEE
Confidence 345566667788999886542 22 25566655 67898887541 1233345555543 24788765
No 307
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=23.86 E-value=2.4e+02 Score=28.96 Aligned_cols=91 Identities=7% Similarity=0.030 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh-hhH
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF-KCL 171 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl-~al 171 (770)
+...+...++..||.+..+.. .+ +.++.+.. ..+|-||+-... .+ .++++.+.. ..+|+|++ ...
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiI~~~~~-~~-~~~~~~l~~----~~iPvV~i~~~~ 159 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLR--RRPEAMVLSYDG-HT-EQTIRLLQR----ASIPIVEIWEKP 159 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TCCSEEEEECSC-CC-HHHHHHHHH----CCSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEeCCC-CC-HHHHHHHHh----CCCCEEEECCcc
Confidence 344566667788999886543 22 45555555 678877764311 12 256666654 35888876 222
Q ss_pred hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
......|+. .-.......++++++++
T Consensus 160 ~~~~~~~V~-~D~~~~~~~a~~~L~~~ 185 (355)
T 3e3m_A 160 AHPIGHTVG-FSNERAAYDMTNALLAR 185 (355)
T ss_dssp SSCSSEEEE-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEE-eChHHHHHHHHHHHHHC
Confidence 222223332 23344455556666654
No 308
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=23.83 E-value=62 Score=35.92 Aligned_cols=95 Identities=17% Similarity=0.232 Sum_probs=57.0
Q ss_pred ecChhhHHHHHHHHHhCCC--EEE----EEC-----------------------CHHHHHHHHHhcCCCceEEEEcc-CC
Q 004184 94 ENDDSTRHVVAALLRNCGY--EVT----EAT-----------------------NGLQAWKILEDLTNHIDLVLTEV-MP 143 (770)
Q Consensus 94 DDd~~~r~~L~~lLe~~G~--eV~----~A~-----------------------dg~EALe~L~~~~~~pDLVLlDi-MP 143 (770)
+++....+.+++.++..|| +|. .+. +..++++++.+.-..|+|+++.- ++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4556667778888876665 222 211 45777666543223478999988 86
Q ss_pred CCCHHHHHHHHHhhcCCCCcchh-----------hhhhHhcCCCc-EEeCCCCHHHHHHHH
Q 004184 144 CLSGVALLSKIMSHKTRKNLPVI-----------IFKCLSKGAVD-FLVKPIRKNELKNLW 192 (770)
Q Consensus 144 gmdGleLlr~IR~~~~~~~IPII-----------vl~al~aGAdd-yL~KP~~~eeL~~~L 192 (770)
..| ++-.++|++. ..+||+ +.++++.++.+ +++|+-..--|.+++
T Consensus 297 ~dD-~~g~~~L~~~---~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~ 353 (439)
T 2akz_A 297 QDD-WAAWSKFTAN---VGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAI 353 (439)
T ss_dssp TTC-HHHHHHHHHT---CSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHH
T ss_pred ccc-HHHHHHHHhC---CCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHH
Confidence 554 6666777764 357776 22567778554 567775443444443
No 309
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=23.50 E-value=42 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCEEEEECCHHHH-------HHHHHhcCCCceEEEEcc
Q 004184 101 HVVAALLRNCGYEVTEATNGLQA-------WKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~dg~EA-------Le~L~~~~~~pDLVLlDi 141 (770)
..|+.+|+..+++|..... .++ ++.|. .||+||++-
T Consensus 43 ~~l~~aL~~~~~~v~~~~~-~~~~~~fp~~~~~L~----~yDvIIl~~ 85 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPA-HTVQIAFPESIDELN----RYDVIVISD 85 (256)
T ss_dssp HHHHHHHHHTTCEEEEECH-HHHHHCCCCSHHHHH----TCSEEEEES
T ss_pred HHHHHHHHhcCceEEEEec-ccchhhCCcChhHHh----cCCEEEEeC
Confidence 4566777777999987732 211 23443 499988863
No 310
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=23.48 E-value=3.7e+02 Score=29.97 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=56.1
Q ss_pred CcEEEEEe----cChhhHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCH
Q 004184 87 SLKVLLVE----NDDSTRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSG 147 (770)
Q Consensus 87 ~lrVLIVD----Dd~~~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMP------------gmdG 147 (770)
+..+++|| ......+.++.+-+.+ +..|+ .+.+.++|..++. ...|.|++-+-| +...
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~---aGaD~I~vg~g~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE---AGADAVKVGIGPGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHTCBCCCH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH---cCCCEEEECCCCCcCCCccccCCCCccH
Confidence 35577776 3344556666666665 55554 4788888877665 357888873211 1234
Q ss_pred HHHHHHHHhhcCCCCcchh----------hhhhHhcCCCcEEe
Q 004184 148 VALLSKIMSHKTRKNLPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 148 leLlr~IR~~~~~~~IPII----------vl~al~aGAddyL~ 180 (770)
++++..+.+......+||| +.+++.+||+....
T Consensus 318 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 318 ISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 5666666553222468998 34788889988765
No 311
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=23.32 E-value=2.9e+02 Score=27.17 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=59.1
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.+.+.+|.++.+.. .. .+|+..++.+..+.+..+++..|.. ..+|++++|. ..+...++... ...+
T Consensus 161 dL~G~~v~v~~g~~-~~----~~l~~~~~~~~~~~~~~~~~~~l~~--g~vDa~i~~~------~~~~~~~~~~~-~~~l 226 (283)
T 2yln_A 161 DIKGVKTAQSLTSN-YG----EKAKAAGAQLVPVDGLAQSLTLIEQ--KRADATLNDE------LAVLDYLKKNP-NAGV 226 (283)
T ss_dssp GCTTSEEEECTTSH-HH----HHHHHTTCEEEECSSHHHHHHHHHT--TSCCEEEEEH------HHHHHHHHHST-TSSE
T ss_pred HhCCCEEEEecCch-HH----HHHHHcCCeEEEeCCHHHHHHHHHc--CCCCEEEecH------HHHHHHHHhCC-CCcE
Confidence 44667777655443 22 2455558899999999999999987 8899999985 12222233322 1122
Q ss_pred chhhhhhHh-cCCCcE-EeCCCCHHHHHHHHHHHHHHhhc
Q 004184 164 PVIIFKCLS-KGAVDF-LVKPIRKNELKNLWQHVWRRCHS 201 (770)
Q Consensus 164 PIIvl~al~-aGAddy-L~KP~~~eeL~~~L~~vlrr~~~ 201 (770)
.++-...+. .....+ +.|- ..+|...|.+++.....
T Consensus 227 ~~~~~~~~~~~~~~~i~~~k~--~~~l~~~i~~al~~l~~ 264 (283)
T 2yln_A 227 KIVWSAPADEKVGSGLIVNKG--NDEAVAKFSTAINELKA 264 (283)
T ss_dssp EEEEECCGGGCEEECCEEESS--CHHHHHHHHHHHHHHHH
T ss_pred EEccCcccCCcccEEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 222101111 111122 3332 46788888888887654
No 312
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=23.27 E-value=17 Score=39.98 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 004184 717 AAVTKYRQKK 726 (770)
Q Consensus 717 ~~~~r~~~kr 726 (770)
+.+.++.+|+
T Consensus 127 ~l~~~l~~~~ 136 (394)
T 2qrj_A 127 NVLMRFIKGH 136 (394)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
Confidence 3445555543
No 313
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=23.12 E-value=86 Score=28.74 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=43.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR 155 (770)
.+|+.||-++...+.++..++..++. +. ...+..+.+..+ ...||+|++|. .....-.++++.|.
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---TGRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---CSCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh---cCCCCEEEECCCCCcchHHHHHHHHH
Confidence 37999999999999999999887753 44 456666544332 25699999996 42122234555554
No 314
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.06 E-value=2.2e+02 Score=28.04 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d------g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||.+..+.. ..+.++.+.. ..+|-||+-. .+. + +.++.++. ..+|+|++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~ 93 (287)
T 3bbl_A 26 FLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRS--GNVDGFVLSSINYN-D--PRVQFLLK----QKFPFVAF 93 (287)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHT--TCCSEEEECSCCTT-C--HHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHc--CCCCEEEEeecCCC-c--HHHHHHHh----cCCCEEEE
Confidence 445566777788999876542 2456777765 6799888754 322 2 55666654 35788866
No 315
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=23.04 E-value=3.7e+02 Score=27.31 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=48.6
Q ss_pred HHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchh----------hhh
Q 004184 103 VAALLRNCG--YEVTEATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVI----------IFK 169 (770)
Q Consensus 103 L~~lLe~~G--~eV~~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPII----------vl~ 169 (770)
|++.|+.-. +.+.......+.++.+.. ..+|.||+|+ -.-.+--++...++..... ..+++ +..
T Consensus 9 ~k~~l~~g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~-~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAVAPY-ASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSCCCHHHHHHHHHHHTTS-SSEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHH
Confidence 556665422 233333445556676765 6799999998 3223444455555443322 23333 336
Q ss_pred hHhcCCCcEE-eCCCCHHHHHHHHH
Q 004184 170 CLSKGAVDFL-VKPIRKNELKNLWQ 193 (770)
Q Consensus 170 al~aGAddyL-~KP~~~eeL~~~L~ 193 (770)
+++.|++.++ .|=-+.+++..++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~ 110 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVS 110 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHH
Confidence 7788888754 34446777555543
No 316
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=22.98 E-value=2.5e+02 Score=27.14 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=46.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc------------C-CCceEEEEcc-CCCCCHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL------------T-NHIDLVLTEV-MPCLSGVAL 150 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~------------~-~~pDLVLlDi-MPgmdGleL 150 (770)
.+|..||-++...+..+..++..|+. |. ...+..+.+..+... . ..||+||+|. .+.. ..+
T Consensus 86 ~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~--~~~ 163 (239)
T 2hnk_A 86 GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENY--PNY 163 (239)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGH--HHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHH--HHH
Confidence 47999999999999999999887762 43 667777766554321 1 4699999997 5432 244
Q ss_pred HHHHHh
Q 004184 151 LSKIMS 156 (770)
Q Consensus 151 lr~IR~ 156 (770)
++.+..
T Consensus 164 l~~~~~ 169 (239)
T 2hnk_A 164 YPLILK 169 (239)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 317
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=22.94 E-value=1.8e+02 Score=31.07 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=42.5
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+-||-++...+.++.-++..|+ .+. ...+..+.+..+......||+||+|.
T Consensus 241 ~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 241 DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 4899999999999999999988776 344 67788887765542236799999996
No 318
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=22.83 E-value=1.8e+02 Score=28.07 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=45.6
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHh
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMS 156 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~ 156 (770)
.+|..||-++...+..+..+...|+ .|. ...+..+.+..+.. ...||+||+|. .+ +-..+++.+..
T Consensus 79 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~fD~I~~~~~~~--~~~~~l~~~~~ 148 (233)
T 2gpy_A 79 ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL-YPLFDVLFIDAAKG--QYRRFFDMYSP 148 (233)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT-SCCEEEEEEEGGGS--CHHHHHHHHGG
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc-CCCccEEEECCCHH--HHHHHHHHHHH
Confidence 4799999999999999999988775 244 45566655544421 25799999998 65 33445555543
No 319
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=22.81 E-value=1.5e+02 Score=29.77 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 99 TRHVVAALLRNCGYEVTEATN---GL---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
+...+...+++.||.+..+.. .. +.++.+.. ..+|.||+.. .+. .-.++++++++ ..+|||++
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~ 89 (313)
T 3m9w_A 20 DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMIN--RGVDVLVIIPYNGQ-VLSNVVKEAKQ----EGIKVLAY 89 (313)
T ss_dssp HHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEEECSSTT-SCHHHHHHHHT----TTCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChh-hhHHHHHHHHH----CCCeEEEE
Confidence 445566777888999886543 22 44555555 6789888765 332 12356677754 36888876
No 320
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=22.79 E-value=96 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=41.9
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEcc-CC
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCGYE--VT-EATNGLQAWKILEDL--TNHIDLVLTEV-MP 143 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G~e--V~-~A~dg~EALe~L~~~--~~~pDLVLlDi-MP 143 (770)
..+|..||-++...+..++.++..|+. |. ...+..+.+..+... ...||+||+|. ..
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 358999999999999999999887753 44 677777765544310 14699999998 54
No 321
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=22.76 E-value=2.5e+02 Score=27.01 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=38.7
Q ss_pred cCCCcEEEEEecChhhHHHHHHHH---HhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALL---RNC--GYEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lL---e~~--G~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+.+.+|.++...... ..+..+. ... ...++.+.+..+++++|.. .++|++|+|.
T Consensus 124 dL~g~~i~v~~g~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--GrvDa~i~~~ 183 (268)
T 3hv1_A 124 GMAGKTLGAQAGSSGY-DAFNASPKILKDVVANQKVVQYSTFTQALIDLNS--GRIDGLLIDR 183 (268)
T ss_dssp GGTTCCEEEETTCHHH-HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH--TSCSEEEEEH
T ss_pred HhCCCEEEEEeCCchH-HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc--CCCCEEEeCH
Confidence 3466788888776543 2333221 111 1578899999999999998 8999999985
No 322
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=22.71 E-value=1.2e+02 Score=32.09 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=40.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~-~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
.+|+.||-++...+.++.-++..++. +. ...|..+.+..+......||+||+|.
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 48999999999999999888876652 43 56677776654432136799999996
No 323
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=22.69 E-value=3.2e+02 Score=25.27 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=40.4
Q ss_pred cEEEEEecChhh--HHHHHHHHHhCCCEEEE-E----CCHHHHHHHHHhc--CCCceEEEEcc-CCCCC--H-------H
Q 004184 88 LKVLLVENDDST--RHVVAALLRNCGYEVTE-A----TNGLQAWKILEDL--TNHIDLVLTEV-MPCLS--G-------V 148 (770)
Q Consensus 88 lrVLIVDDd~~~--r~~L~~lLe~~G~eV~~-A----~dg~EALe~L~~~--~~~pDLVLlDi-MPgmd--G-------l 148 (770)
.|||++-|.-.. ...+...|... +.|.. . ......++.+... ...||+||+.+ .-+.. - -
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~l~ 99 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGLHGFDYTEEEYDKSFP 99 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHSCCSEEEECCCSSCTTSCHHHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHHHHHHHHH
Confidence 389999998553 22344555432 34432 1 1122333333211 26799999987 65432 1 2
Q ss_pred HHHHHHHhhcCCCCcchhhh
Q 004184 149 ALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 149 eLlr~IR~~~~~~~IPIIvl 168 (770)
++++.||+.. +..+||++
T Consensus 100 ~ii~~l~~~~--p~~~ii~~ 117 (200)
T 4h08_A 100 KLIKIIRKYA--PKAKLIWA 117 (200)
T ss_dssp HHHHHHHHHC--TTCEEEEE
T ss_pred HHHHHHhhhC--CCccEEEe
Confidence 3556666553 45555543
No 324
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=22.59 E-value=1.7e+02 Score=24.46 Aligned_cols=52 Identities=23% Similarity=0.338 Sum_probs=34.7
Q ss_pred CcEEEEEecChhhHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEcc
Q 004184 87 SLKVLLVENDDSTRHVVAALLRNCG-YEVTEATNGLQAWKILEDLTNHIDLVLTEV 141 (770)
Q Consensus 87 ~lrVLIVDDd~~~r~~L~~lLe~~G-~eV~~A~dg~EALe~L~~~~~~pDLVLlDi 141 (770)
+++|+|+-- -.+-..+...|...| ++|+.+....+.++.+.. ..+.++..|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~ 57 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDA 57 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecC
Confidence 468999988 666666666677778 888866555555555554 4456666665
No 325
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=22.43 E-value=2.7e+02 Score=26.74 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhh---------hhHhc
Q 004184 104 AALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIF---------KCLSK 173 (770)
Q Consensus 104 ~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl---------~al~a 173 (770)
....+.+|..+. .+.+..++++.+. ..+|+|++-.- ...|++.+++|++... ..+||++. ++++.
T Consensus 94 ~~~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v~~t-~~~g~~~~~~l~~~~~-~~ipvia~GGI~~~~i~~~~~~ 168 (212)
T 2v82_A 94 IRRAVGYGMTVCPGCATATEAFTALE---AGAQALKIFPS-SAFGPQYIKALKAVLP-SDIAVFAVGGVTPENLAQWIDA 168 (212)
T ss_dssp HHHHHHTTCEEECEECSHHHHHHHHH---TTCSEEEETTH-HHHCHHHHHHHHTTSC-TTCEEEEESSCCTTTHHHHHHH
T ss_pred HHHHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEEecC-CCCCHHHHHHHHHhcc-CCCeEEEeCCCCHHHHHHHHHc
Confidence 345566777644 5788899877654 45788886321 1236788888876431 15888843 67788
Q ss_pred CCCcEEe
Q 004184 174 GAVDFLV 180 (770)
Q Consensus 174 GAddyL~ 180 (770)
||+.++.
T Consensus 169 Ga~gv~v 175 (212)
T 2v82_A 169 GCAGAGL 175 (212)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998763
No 326
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.42 E-value=1.3e+02 Score=29.85 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATN-----GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~d-----g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||.+..+.. ..+.++.+.. ..+|-||+-. .+ +. +.++.+.. .+|+|++
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~--~~-~~~~~~~~-----~iPvV~i 94 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRF--DT-DELGALAD-----RVPALVV 94 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCC--CH-HHHHHHHT-----TSCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCC--CH-HHHHHHHc-----CCCEEEE
Confidence 34456667788998875432 3456666655 6799888754 32 22 56666542 5788866
No 327
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=22.31 E-value=1.2e+02 Score=31.29 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=6.3
Q ss_pred CCceEEEEc
Q 004184 132 NHIDLVLTE 140 (770)
Q Consensus 132 ~~pDLVLlD 140 (770)
.+||+||.|
T Consensus 101 ~~pD~Vi~d 109 (402)
T 3ia7_A 101 NPPDLVVYD 109 (402)
T ss_dssp CCCSEEEEE
T ss_pred cCCCEEEEC
Confidence 567777777
No 328
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=22.27 E-value=3.4e+02 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=23.3
Q ss_pred Ccchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 162 NLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 162 ~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
.+|+|+. ...+.| .+++.. .+.++|.++|.+++.
T Consensus 293 G~PvI~~~~~~~~~~~~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 293 GVPVVVLRNVTERPEGLKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp TCCEEECSSSCSCHHHHHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CCCEEeccCCCcchhhhcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 5677743 224445 467774 599999999988874
No 329
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=22.22 E-value=1.9e+02 Score=31.48 Aligned_cols=31 Identities=6% Similarity=-0.141 Sum_probs=22.6
Q ss_pred hhhhHhcCCCcEEeCCCC--HHHHHHHHHHHHH
Q 004184 167 IFKCLSKGAVDFLVKPIR--KNELKNLWQHVWR 197 (770)
Q Consensus 167 vl~al~aGAddyL~KP~~--~eeL~~~L~~vlr 197 (770)
++.|+++|..=|+-||+. .++..+++..+-+
T Consensus 108 ~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 108 GVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp HHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 347888999889999974 6777666655533
No 330
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=22.06 E-value=70 Score=35.00 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCcEEEEEecChhhHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcc
Q 004184 86 RSLKVLLVENDDSTRHVVAALLRNCGYEVTEATN-GLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLP 164 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~d-g~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IP 164 (770)
.+..|+|||.++...+.+ +..|+.++...- -.+.|+.+.- ...|+||+-+-.+..-+.++..+|... +.+.
T Consensus 26 ~g~~vvvId~d~~~v~~~----~~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~~~n~~i~~~ar~~~--p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETL----RKFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQTNLQLTEMVKEHF--PHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHH----HHTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSHHHHHHHHHHHHHHC--TTCE
T ss_pred CCCCEEEEECCHHHHHHH----HhCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCChHHHHHHHHHHHHhC--CCCe
Confidence 356789999998765544 346777653321 2334444322 467888876511223355666666654 5666
Q ss_pred hhhh--------hhHhcCCCcEEe
Q 004184 165 VIIF--------KCLSKGAVDFLV 180 (770)
Q Consensus 165 IIvl--------~al~aGAddyL~ 180 (770)
||+. ....+||+.++.
T Consensus 98 Iiara~~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARARDVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEESSHHHHHHHHHTTCSSCEE
T ss_pred EEEEECCHHHHHHHHHCCCCEEEC
Confidence 7632 557789988764
No 331
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=21.96 E-value=79 Score=32.73 Aligned_cols=90 Identities=11% Similarity=0.165 Sum_probs=57.3
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEcc--CCCC--C--HHHHHHHHHhhcCCCCcchhhh------
Q 004184 103 VAALLRNCGYEVT--EATNGLQAWKILEDLTNHIDLVLTEV--MPCL--S--GVALLSKIMSHKTRKNLPVIIF------ 168 (770)
Q Consensus 103 L~~lLe~~G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi--MPgm--d--GleLlr~IR~~~~~~~IPIIvl------ 168 (770)
+...|+..||.+. -+.+|-..+..|.. -+||.|=+|- +-++ + ...+++.|......-.+.||+-
T Consensus 168 ~l~~Lr~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~vvAEGVEt~~ 245 (294)
T 2r6o_A 168 CLDALRARGVRLALDDFGTGYSSLSYLSQ--LPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVVAEGIETAQ 245 (294)
T ss_dssp HHHHHHHHTCEEEEEEETSSCBCHHHHHH--SCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSHH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHh--CCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEEEEecCCcHH
Confidence 3445667788765 67777778888887 7899999995 2332 2 2344554433221234556621
Q ss_pred ---hhHhcCCCc----EEeCCCCHHHHHHHHHH
Q 004184 169 ---KCLSKGAVD----FLVKPIRKNELKNLWQH 194 (770)
Q Consensus 169 ---~al~aGAdd----yL~KP~~~eeL~~~L~~ 194 (770)
.+.+.|++. |+.||...+++...+.+
T Consensus 246 q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 246 QYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp HHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 445677754 58899999998876653
No 332
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=21.94 E-value=6.6e+02 Score=25.76 Aligned_cols=94 Identities=9% Similarity=0.090 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCCEEEEECC---------------HHHHHHHHHhcCCCceEEEEcc--CC-CCC---HHHHHHHHHhhcC
Q 004184 101 HVVAALLRNCGYEVTEATN---------------GLQAWKILEDLTNHIDLVLTEV--MP-CLS---GVALLSKIMSHKT 159 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~d---------------g~EALe~L~~~~~~pDLVLlDi--MP-gmd---GleLlr~IR~~~~ 159 (770)
..+..+..++|..++.... ..+.++.+.+.+-..+=||+|. .+ +.+ .+++++.|+....
T Consensus 115 ~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~ 194 (271)
T 2yci_X 115 DIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKL 194 (271)
T ss_dssp HHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHH
Confidence 3455566677887775553 2223334444333445588887 45 443 3678888876542
Q ss_pred -C-CCcchhh--------------------hhhHhcCCCcEEeCCCCHHHHHHHHHHH
Q 004184 160 -R-KNLPVII--------------------FKCLSKGAVDFLVKPIRKNELKNLWQHV 195 (770)
Q Consensus 160 -~-~~IPIIv--------------------l~al~aGAddyL~KP~~~eeL~~~L~~v 195 (770)
. +..|+++ ..++.+|++..+..|.+. ++.+++..+
T Consensus 195 ~~~p~~p~l~G~Snksfg~~~r~~l~~t~~~~a~~~g~~~~iv~~~d~-~~~~~~~~~ 251 (271)
T 2yci_X 195 MANPAPRTVLGLSNVSQKCPDRPLINRTYLVMAMTAGLDAAIMDVDDD-ALVDAAATA 251 (271)
T ss_dssp SSSSCCEEEEEGGGGGTTCSSHHHHHHHHHHHHHHHTCCEEEECTTCH-HHHHHHHHH
T ss_pred hCCCCCCEEEeeCccccCCchHHHHHHHHHHHHHHHhCCcEEECCCcH-HHHHHHHHH
Confidence 2 3578771 156889999999999987 666666433
No 333
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.94 E-value=1.3e+02 Score=29.27 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCEEEEECCH---H---HHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 100 RHVVAALLRNCGYEVTEATNG---L---QAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~~A~dg---~---EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
...+...+++.||.+..+... + +.++.+.. ..+|-||+-. .+. ..+.++.+++. .+|+|++
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~--~~~~~~~~~~~----~iPvV~~ 88 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRA--RRCDALFVASCLPP--EDDSYRELQDK----GLPVIAI 88 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCCCCS--SCCHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH--cCCCEEEEecCccc--cHHHHHHHHHc----CCCEEEE
Confidence 445566677889998855432 2 34555555 6789888755 432 13455666543 5788866
No 334
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=21.89 E-value=3.3e+02 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=26.0
Q ss_pred CCcchhhh-------hhHhcCCCcEEeCCCCHHHHHHHHHHHHH
Q 004184 161 KNLPVIIF-------KCLSKGAVDFLVKPIRKNELKNLWQHVWR 197 (770)
Q Consensus 161 ~~IPIIvl-------~al~aGAddyL~KP~~~eeL~~~L~~vlr 197 (770)
-.+|+|++ +..+.| ..++..+ +.++|..+|..++.
T Consensus 319 ~g~PvV~~~~~~~~~e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPEGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp TTCCEEECCSSCSCHHHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCCcchhheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 45788754 346667 5677766 99999999998874
No 335
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=21.88 E-value=1.4e+02 Score=30.84 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=40.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-CCCCCH-----HHHHHHHH
Q 004184 88 LKVLLVENDDSTRHVVAALLRNC-----GYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-MPCLSG-----VALLSKIM 155 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~-----G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-MPgmdG-----leLlr~IR 155 (770)
.+|..||-++...+..+..+..+ .-.+. ...|+.+.+..+. ...||+||+|. .|.... .++++.++
T Consensus 120 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~--~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~ 197 (304)
T 3bwc_A 120 EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP--DNTYDVVIIDTTDPAGPASKLFGEAFYKDVL 197 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC--TTCEEEEEEECC---------CCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc--CCceeEEEECCCCccccchhhhHHHHHHHHH
Confidence 48999999999999888877421 11233 5667766543211 26799999998 664211 35555554
Q ss_pred h
Q 004184 156 S 156 (770)
Q Consensus 156 ~ 156 (770)
+
T Consensus 198 ~ 198 (304)
T 3bwc_A 198 R 198 (304)
T ss_dssp H
T ss_pred H
Confidence 3
No 336
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=21.81 E-value=19 Score=37.54 Aligned_cols=7 Identities=29% Similarity=0.264 Sum_probs=3.8
Q ss_pred CCcCCCC
Q 004184 632 PQCGSSN 638 (770)
Q Consensus 632 p~cgsSn 638 (770)
.-|.+.+
T Consensus 38 aDc~~kd 44 (268)
T 3k9f_C 38 TPAQSKN 44 (268)
T ss_dssp BCCSSCC
T ss_pred cCcccCC
Confidence 4576553
No 337
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=21.71 E-value=19 Score=37.49 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 004184 716 EAAVTKYRQ 724 (770)
Q Consensus 716 ~~~~~r~~~ 724 (770)
.+++.+++.
T Consensus 156 ~~a~kaw~~ 164 (262)
T 1d1d_A 156 ASALQAFRE 164 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 355566554
No 338
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=21.70 E-value=95 Score=29.00 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=39.3
Q ss_pred EEEEEecChhhHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEcc--CCCCC
Q 004184 89 KVLLVENDDSTRHVVAALLRNCGY--EVT-EATNGLQAWKILEDLTNHIDLVLTEV--MPCLS 146 (770)
Q Consensus 89 rVLIVDDd~~~r~~L~~lLe~~G~--eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--MPgmd 146 (770)
+|..||-++...+..+..++..|+ .+. ...+..+....+ ...||+|+++. +|..+
T Consensus 49 ~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~fD~v~~~~~~~~~~~ 108 (197)
T 3eey_A 49 RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI---DCPVKAVMFNLGYLPSGD 108 (197)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC---CSCEEEEEEEESBCTTSC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc---cCCceEEEEcCCcccCcc
Confidence 799999999999999999998776 344 445544432222 25799999998 47443
No 339
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=21.69 E-value=23 Score=34.64 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=3.1
Q ss_pred cccccccc
Q 004184 596 LTQHYDNC 603 (770)
Q Consensus 596 ~~~~~~~~ 603 (770)
|+-|||||
T Consensus 166 ~~~~~~~~ 173 (178)
T 3tq8_A 166 FQGHHHHH 173 (178)
T ss_dssp TCCCSCCC
T ss_pred cccccccc
Confidence 44333333
No 340
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=21.68 E-value=2.2e+02 Score=27.66 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=58.4
Q ss_pred cCCCcEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCc
Q 004184 84 HLRSLKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNL 163 (770)
Q Consensus 84 ~~~~lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~I 163 (770)
.+.+.+|.++..... ...|...+ -+..++.+.+..+++++|.. .++|++|+|. ..+...+++. ....+
T Consensus 136 dL~g~~i~v~~g~~~-~~~l~~~~--~~~~~~~~~~~~~~l~~L~~--GrvDa~i~~~------~~~~~~~~~~-~~~~l 203 (267)
T 3mpk_A 136 HLDGRTVALVRNSAA-IPLLQRRY--PQAKVVTADNPSEAMLMVAN--GQADAVVQTQ------ISASYYVNRY-FAGKL 203 (267)
T ss_dssp GCTTCEEEEETTCTH-HHHHHHHC--TTSEEEEESSHHHHHHHHHH--TSCSEEEEEH------HHHHHHHHHH-CTTTE
T ss_pred HHCCCEEEEeCCchh-HHHHHHhC--CCcEEEEeCCHHHHHHHHHc--CCCCEEEecH------HHHHHHHHhc-CCCce
Confidence 456778888877653 23333221 16789999999999999998 8999999985 1122223321 11223
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHHh
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRC 199 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr~ 199 (770)
.++...........|...+ ...+|...|.+++...
T Consensus 204 ~~~~~~~~~~~~~~~~~~k-~~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 204 RIASALDLPPAEIALATTR-GQTELMSILNKALYSI 238 (267)
T ss_dssp EEEEECSSCCEEEEEEEET-TCHHHHHHHHHHHHTS
T ss_pred EEEeccCCCceeEEEEEcC-CCHHHHHHHHHHHHhC
Confidence 2221100000111222222 2557888888888764
No 341
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=21.68 E-value=33 Score=30.51 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhCCCEEEEEC---CHHHH-HHHHHhcCCC---ceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhh
Q 004184 98 STRHVVAALLRNCGYEVTEAT---NGLQA-WKILEDLTNH---IDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFK 169 (770)
Q Consensus 98 ~~r~~L~~lLe~~G~eV~~A~---dg~EA-Le~L~~~~~~---pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~ 169 (770)
.....+..++....+.+.... .-..| ..+|.+ .. +++..+|+ ... +|.++...|.+......+|.|++.
T Consensus 13 ~~~~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~--~~~~~i~~~~vdid~~~-~~~~~~~~l~~~~g~~tvP~vfi~ 89 (118)
T 3c1r_A 13 ETIKHVKDLIAENEIFVASKTYCPYCHAALNTLFEK--LKVPRSKVLVLQLNDMK-EGADIQAALYEINGQRTVPNIYIN 89 (118)
T ss_dssp HHHHHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTT--SCCCGGGEEEEEGGGST-THHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHH--cCCCCCCeEEEECccCC-ChHHHHHHHHHHhCCCCcCEEEEC
Confidence 344566666665544444322 34566 566655 44 77888888 422 466666666554444678988653
No 342
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=21.68 E-value=91 Score=34.04 Aligned_cols=51 Identities=6% Similarity=-0.080 Sum_probs=39.4
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCE---EE-EECCHHHHHH-HHHhcCCCceEEEEcc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYE---VT-EATNGLQAWK-ILEDLTNHIDLVLTEV 141 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~e---V~-~A~dg~EALe-~L~~~~~~pDLVLlDi 141 (770)
.+|+.||-++...+.+++-++..|++ +. ...|..+.+. .+ ...||+|++|.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP 133 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP 133 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC
Confidence 47999999999999999999988863 44 5556665544 32 25799999996
No 343
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=21.44 E-value=3.5e+02 Score=29.08 Aligned_cols=80 Identities=10% Similarity=0.230 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEccCC------------CCCHHHHHHHHHhhcCCCC
Q 004184 98 STRHVVAALLRNC-GYEVT--EATNGLQAWKILEDLTNHIDLVLTEVMP------------CLSGVALLSKIMSHKTRKN 162 (770)
Q Consensus 98 ~~r~~L~~lLe~~-G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDiMP------------gmdGleLlr~IR~~~~~~~ 162 (770)
...+.++.+-+.. +..|. .+.+.++|..+++ ..+|.|++-.-+ +...++++..+++......
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 4455555555555 66666 4777777766554 458988882111 1224556666655322247
Q ss_pred cchh----------hhhhHhcCCCcEEe
Q 004184 163 LPVI----------IFKCLSKGAVDFLV 180 (770)
Q Consensus 163 IPII----------vl~al~aGAddyL~ 180 (770)
+||| +.+++.+||+.+..
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 8998 34788899988765
No 344
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.43 E-value=2.3e+02 Score=28.76 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhhhhH
Q 004184 99 TRHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIFKCL 171 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl~al 171 (770)
+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+-. .... ++++.++. ..+|+|++...
T Consensus 80 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdGiIi~~~~~~~---~~~~~l~~----~~iPvV~~~~~ 150 (339)
T 3h5o_A 80 TLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQ--HRPDGVLITGLSHAE---PFERILSQ----HALPVVYMMDL 150 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHT--TCCSEEEEECSCCCT---THHHHHHH----TTCCEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHc--CCCCEEEEeCCCCCH---HHHHHHhc----CCCCEEEEeec
Confidence 455667777888999886543 2 234555554 6788777643 2222 45555654 35788866322
Q ss_pred -hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 -SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 -~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
..... |+. .-.......++++++++
T Consensus 151 ~~~~~~-~V~-~D~~~~~~~a~~~L~~~ 176 (339)
T 3h5o_A 151 ADDGRC-CVG-FSQEDAGAAITRHLLSR 176 (339)
T ss_dssp CSSSCC-EEE-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCe-EEE-ECHHHHHHHHHHHHHHC
Confidence 22222 332 33334445555555554
No 345
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=21.42 E-value=75 Score=32.58 Aligned_cols=87 Identities=20% Similarity=0.268 Sum_probs=51.5
Q ss_pred EEEEEec-Chhh---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCC-CCc
Q 004184 89 KVLLVEN-DDST---RHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTR-KNL 163 (770)
Q Consensus 89 rVLIVDD-d~~~---r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~-~~I 163 (770)
+|+||-. .... .+.+..+|+..|+++. . ..+|+||+= |.||. +++.++..... ..+
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~--~~~D~vv~l---GGDGT-~l~aa~~~~~~~~~~ 62 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------D--VEPEIVISI---GGDGT-FLSAFHQYEERLDEI 62 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------S--SSCSEEEEE---ESHHH-HHHHHHHTGGGTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------C--CCCCEEEEE---cCcHH-HHHHHHHHhhcCCCC
Confidence 5655543 2222 3345566778888871 2 468888772 66773 33333332111 368
Q ss_pred chhhhhhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 164 PVIIFKCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 164 PIIvl~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
||+-+ ..|-.+||. .+.++++..+|..++..
T Consensus 63 PilGI---n~G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 63 AFIGI---HTGHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp EEEEE---ESSSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CEEEE---eCCCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 88755 346667776 56677888888887753
No 346
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=21.30 E-value=1.4e+02 Score=29.52 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEcc-C--CCCCH--------------------HHHHHHHHhhcCCCCcchhhh---------
Q 004184 121 LQAWKILEDLTNHIDLVLTEV-M--PCLSG--------------------VALLSKIMSHKTRKNLPVIIF--------- 168 (770)
Q Consensus 121 ~EALe~L~~~~~~pDLVLlDi-M--PgmdG--------------------leLlr~IR~~~~~~~IPIIvl--------- 168 (770)
.+.++.+.+ . .|+|-+++ . |.+|| ++++++||+. ..+||+++
T Consensus 22 ~~~a~~~~~--~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~---~~~pv~~~~~~~~~~~~ 95 (248)
T 1geq_A 22 LNFLLALDE--Y-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRH---SSTPIVLMTYYNPIYRA 95 (248)
T ss_dssp HHHHHHHGG--G-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTT---CCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHH--c-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh---CCCCEEEEeccchhhhc
Q ss_pred -------hhHhcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 169 -------KCLSKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 169 -------~al~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
.++++||+.++.-.+..+++...++.+-+.
T Consensus 96 ~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~ 132 (248)
T 1geq_A 96 GVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREE 132 (248)
T ss_dssp CHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHh
No 347
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=21.22 E-value=2.9e+02 Score=28.62 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc--CC--CCCHHHHHHHHHhhcCCCCcchh--------
Q 004184 100 RHVVAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV--MP--CLSGVALLSKIMSHKTRKNLPVI-------- 166 (770)
Q Consensus 100 r~~L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi--MP--gmdGleLlr~IR~~~~~~~IPII-------- 166 (770)
...+....+.+|.++. .+.+.+|+...+. ..+|+|=+.. +- ..| ++.+.+|...- ...+|+|
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i-p~~~~vIaesGI~t~ 232 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVN-LAVSERLAKMA-PSDRLLVGESGIFTH 232 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBC-THHHHHHHHHS-CTTSEEEEESSCCSH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCC-hHHHHHHHHhC-CCCCcEEEECCCCCH
Confidence 3344445567899876 8899999866664 4578876653 21 222 45555665432 2357777
Q ss_pred --hhhhHhcCCCcEEe-----CCCCHHH
Q 004184 167 --IFKCLSKGAVDFLV-----KPIRKNE 187 (770)
Q Consensus 167 --vl~al~aGAddyL~-----KP~~~ee 187 (770)
+.++.+.|++++|+ |+-++.+
T Consensus 233 edv~~l~~~Ga~gvLVG~almr~~d~~~ 260 (272)
T 3tsm_A 233 EDCLRLEKSGIGTFLIGESLMRQHDVAA 260 (272)
T ss_dssp HHHHHHHTTTCCEEEECHHHHTSSCHHH
T ss_pred HHHHHHHHcCCCEEEEcHHHcCCcCHHH
Confidence 33678899999976 4555443
No 348
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=21.07 E-value=3.7e+02 Score=28.09 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=49.0
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEcc-C-CC----CCHHHHHHHHHhhcCCCCcchhh--------
Q 004184 103 VAALLRNCGYEVT-EATNGLQAWKILEDLTNHIDLVLTEV-M-PC----LSGVALLSKIMSHKTRKNLPVII-------- 167 (770)
Q Consensus 103 L~~lLe~~G~eV~-~A~dg~EALe~L~~~~~~pDLVLlDi-M-Pg----mdGleLlr~IR~~~~~~~IPIIv-------- 167 (770)
+...|+..|..|. .+.+.++|..+.. ..+|.|+++- - .+ ...++++..+++. ..+|||+
T Consensus 116 ~~~~l~~~g~~v~~~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~ 189 (326)
T 3bo9_A 116 YIRELKENGTKVIPVVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGR 189 (326)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHH
T ss_pred HHHHHHHcCCcEEEEcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHH
Confidence 3445566787776 6788888876654 3578888864 2 22 3467888888764 2688883
Q ss_pred --hhhHhcCCCcEEe
Q 004184 168 --FKCLSKGAVDFLV 180 (770)
Q Consensus 168 --l~al~aGAddyL~ 180 (770)
.+++.+||+.+..
T Consensus 190 dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 190 GMAAAFALGAEAVQM 204 (326)
T ss_dssp HHHHHHHHTCSEEEE
T ss_pred HHHHHHHhCCCEEEe
Confidence 3778889988764
No 349
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=20.86 E-value=5e+02 Score=27.42 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCcEEEEEecChhhHHHHHHHH---HhCCCEEE--EEC---CHHHHHHHHHhc--CCCceEEEEcc-CC-CCCHHHHHHH
Q 004184 86 RSLKVLLVENDDSTRHVVAALL---RNCGYEVT--EAT---NGLQAWKILEDL--TNHIDLVLTEV-MP-CLSGVALLSK 153 (770)
Q Consensus 86 ~~lrVLIVDDd~~~r~~L~~lL---e~~G~eV~--~A~---dg~EALe~L~~~--~~~pDLVLlDi-MP-gmdGleLlr~ 153 (770)
..+-|++|.||+.....++... ++.|++.. ... +.+|.++.+.+. ...+|=||+-+ +| .+|--.++..
T Consensus 54 P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~ 133 (303)
T 4b4u_A 54 PILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDA 133 (303)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhc
Confidence 4578999999999887766554 45687654 222 456677766543 34678899999 87 4777777777
Q ss_pred HHhhcCCCCc-chhhhhhHhcCCCcEEeCCCCHHHHHHHHH
Q 004184 154 IMSHKTRKNL-PVIIFKCLSKGAVDFLVKPIRKNELKNLWQ 193 (770)
Q Consensus 154 IR~~~~~~~I-PIIvl~al~aGAddyL~KP~~~eeL~~~L~ 193 (770)
|.-..--..+ |+= +--+..|-..|+ |.++.-+..+|+
T Consensus 134 I~p~KDVDG~hp~N-~G~L~~g~~~~~--PcTp~gv~~lL~ 171 (303)
T 4b4u_A 134 ISLAKDVDGVTCLG-FGRMAMGEAAYG--SATPAGIMTILK 171 (303)
T ss_dssp SCGGGCTTCCCHHH-HHHHHTTCCCCC--CHHHHHHHHHHH
T ss_pred cCcccccCccCcch-HHHhcCCCCccc--CccHHHHHHHHH
Confidence 7432211111 221 122333444443 777766555554
No 350
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=20.80 E-value=1.8e+02 Score=29.65 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEEcc-C-C---CCCHHHHHHHHHhhcCCCCcchhhh----------hhHhc
Q 004184 111 GYEVT--EATNGLQAWKILEDLTNHIDLVLTEV-M-P---CLSGVALLSKIMSHKTRKNLPVIIF----------KCLSK 173 (770)
Q Consensus 111 G~eV~--~A~dg~EALe~L~~~~~~pDLVLlDi-M-P---gmdGleLlr~IR~~~~~~~IPIIvl----------~al~a 173 (770)
|+.+. ++.+.+++....+. ..|+|+.=. . . +..+.+++++|++. ..+|||+. +++..
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 77666 45567666555443 356663311 1 1 23357889999874 37888842 66889
Q ss_pred CCCcEEe
Q 004184 174 GAVDFLV 180 (770)
Q Consensus 174 GAddyL~ 180 (770)
||+.+++
T Consensus 200 GAdgViV 206 (264)
T 1xm3_A 200 GADGVLL 206 (264)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998754
No 351
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=20.59 E-value=21 Score=38.53 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=0.0
Q ss_pred cccCCCCc--cchhhh
Q 004184 727 TERCFRKK--VRYQSR 740 (770)
Q Consensus 727 ~~r~~~k~--iry~~r 740 (770)
+.-||-+| |-|..|
T Consensus 320 ~~~~~~~~~~~~~~~~ 335 (358)
T 2pk2_A 320 CQLCFLRSLGIDYLDA 335 (358)
T ss_dssp ----------------
T ss_pred cHHHhccccceeeecc
Confidence 45677777 677544
No 352
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.41 E-value=3.5e+02 Score=26.66 Aligned_cols=91 Identities=4% Similarity=0.066 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEccCCCCCHHHHHHHHHhhcCCCCcchhhhhhH-
Q 004184 99 TRHVVAALLRNCGYEVTEATN---G---LQAWKILEDLTNHIDLVLTEVMPCLSGVALLSKIMSHKTRKNLPVIIFKCL- 171 (770)
Q Consensus 99 ~r~~L~~lLe~~G~eV~~A~d---g---~EALe~L~~~~~~pDLVLlDiMPgmdGleLlr~IR~~~~~~~IPIIvl~al- 171 (770)
+...+...+++.||.+..+.. . .+.++.+.. ..+|-||+-.. ..+ .+.++.++. ..+|+|++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~-~~~-~~~~~~l~~----~~iPvV~~~~~~ 105 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLG--KQVDGIVFMGG-NIT-DEHVAEFKR----SPVPIVLAASVE 105 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH--TTCSEEEECCS-CCC-HHHHHHHHH----SSSCEEEESCCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecC-CCC-HHHHHHHHh----cCCCEEEEcccc
Confidence 344556667788999875532 2 234555555 67898877431 112 345666653 35888876321
Q ss_pred hcCCCcEEeCCCCHHHHHHHHHHHHHH
Q 004184 172 SKGAVDFLVKPIRKNELKNLWQHVWRR 198 (770)
Q Consensus 172 ~aGAddyL~KP~~~eeL~~~L~~vlrr 198 (770)
......|+. .-.......+.+.++++
T Consensus 106 ~~~~~~~V~-~D~~~~g~~a~~~L~~~ 131 (289)
T 2fep_A 106 EQEETPSVA-IDYEQAIYDAVKLLVDK 131 (289)
T ss_dssp TTCCSCEEE-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEE-ECcHHHHHHHHHHHHHC
Confidence 111223433 22233344445555543
No 353
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=20.27 E-value=94 Score=29.67 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.3
Q ss_pred cEEEEEecChhhHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEc
Q 004184 88 LKVLLVENDDSTRHVVAALLRNCGYEVTEATNGLQAWKILEDLTNHIDLVLTE 140 (770)
Q Consensus 88 lrVLIVDDd~~~r~~L~~lLe~~G~eV~~A~dg~EALe~L~~~~~~pDLVLlD 140 (770)
++|+|+|-.......+ ..|+..|+++..+...++ + ..+|.||+-
T Consensus 2 m~I~il~~~~~~~~~~-~~l~~~g~~~~~~~~~~~----l----~~~d~iil~ 45 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHI-HAIEACGAAGLVVKRPEQ----L----NEVDGLILP 45 (196)
T ss_dssp CEEEEECSSSCCHHHH-HHHHHTTCEEEEECSGGG----G----GGCSEEEEC
T ss_pred cEEEEEEccCCcHHHH-HHHHHCCCEEEEeCChHH----H----hhCCEEEEC
Confidence 6899998544444444 788889999998876432 2 247887773
No 354
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.06 E-value=2e+02 Score=28.31 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEcc-CCCCCHHHHHHHHHhhcCCCCcchhhh
Q 004184 101 HVVAALLRNCGYEVTEATN------GLQAWKILEDLTNHIDLVLTEV-MPCLSGVALLSKIMSHKTRKNLPVIIF 168 (770)
Q Consensus 101 ~~L~~lLe~~G~eV~~A~d------g~EALe~L~~~~~~pDLVLlDi-MPgmdGleLlr~IR~~~~~~~IPIIvl 168 (770)
..+...+++.||.+..+.. ..+.++++.. ..+|-||+-. ... -+.++.+++ ..+|+|++
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~i 95 (288)
T 3gv0_A 30 FGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILET--GSADGVIISKIEPN---DPRVRFMTE----RNMPFVTH 95 (288)
T ss_dssp HHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHH--TCCSEEEEESCCTT---CHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHc--CCccEEEEecCCCC---cHHHHHHhh----CCCCEEEE
Confidence 3445556677998876542 1344555555 6788776643 211 145666654 35788865
Done!