Query 004185
Match_columns 770
No_of_seqs 380 out of 1173
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 99.9 5.9E-27 2E-31 213.3 12.9 96 593-693 1-96 (104)
2 1jo0_A Hypothetical protein HI 99.9 1.6E-26 5.4E-31 208.6 13.1 96 593-694 2-97 (98)
3 1jo0_A Hypothetical protein HI 99.9 1.4E-25 4.9E-30 202.3 13.1 89 179-267 2-90 (98)
4 1rq8_A Conserved hypothetical 99.9 1.9E-25 6.4E-30 203.5 13.2 89 179-267 1-89 (104)
5 3ka5_A Ribosome-associated pro 53.1 32 0.0011 29.0 6.3 48 222-269 1-51 (65)
6 3k2t_A LMO2511 protein; lister 34.4 35 0.0012 27.9 3.7 47 223-269 2-51 (57)
7 3lyv_A Ribosome-associated fac 30.4 38 0.0013 28.6 3.3 48 222-269 2-52 (66)
8 3p04_A Uncharacterized BCR; SE 19.6 3.3E+02 0.011 23.9 7.4 56 626-686 19-77 (87)
9 3ka5_A Ribosome-associated pro 18.6 1.6E+02 0.0054 24.8 4.9 50 636-686 1-50 (65)
10 3sbx_A Putative uncharacterize 17.4 1.4E+02 0.0048 29.4 5.1 37 598-634 127-163 (189)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=5.9e-27 Score=213.33 Aligned_cols=96 Identities=23% Similarity=0.382 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEeeecc
Q 004185 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (770)
Q Consensus 593 ~LT~eER~~LRkig~klkpvv~IGk~Gvtd~vIe~i~~alk~rELIKV~v~~~~~~d~~eia~~L~~~sgg~lVqv~k~~ 672 (770)
|||++||+|||++||+++|+|+||++|||++|+++|++||++||||||+|++++.++++++|..||+.+||++||+
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~---- 76 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQV---- 76 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEccCCCCCCCcCCC
Q 004185 673 KGYAIILYRGKNYERPACLRP 693 (770)
Q Consensus 673 iG~~iILYRgkny~rP~~~~P 693 (770)
||+++||||+++ ..|.+.+|
T Consensus 77 IG~~~VLYR~~~-~~~~i~~~ 96 (104)
T 1rq8_A 77 IGSMIVIYRESK-ENKEIELP 96 (104)
T ss_dssp ETTEEEEEECCC-SCCSCCCC
T ss_pred ECCEEEEEeCCC-CCCceecc
Confidence 999999999987 66666666
No 2
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.94 E-value=1.6e-26 Score=208.62 Aligned_cols=96 Identities=17% Similarity=0.330 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEeeecc
Q 004185 593 GITEEERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKHRELVKIISKQRKIEAALQEARTLEVESGGILVAVERVN 672 (770)
Q Consensus 593 ~LT~eER~~LRkig~klkpvv~IGk~Gvtd~vIe~i~~alk~rELIKV~v~~~~~~d~~eia~~L~~~sgg~lVqv~k~~ 672 (770)
+||++||+|||++||+++|+|+||++|||++|+++|++||++||||||+|.++++++++++|.+||+.+||++||+
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~---- 77 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQT---- 77 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEE----
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEE----
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEccCCCCCCCcCCCc
Q 004185 673 KGYAIILYRGKNYERPACLRPK 694 (770)
Q Consensus 673 iG~~iILYRgkny~rP~~~~P~ 694 (770)
||+++||||++.. |...+|.
T Consensus 78 IG~~~vLyR~~~~--~~i~lp~ 97 (98)
T 1jo0_A 78 IGHILVLYRPSEE--AKIQLPR 97 (98)
T ss_dssp ETTEEEEECCCSS--CCBCCCC
T ss_pred ECCEEEEEccCCC--CCcCCCC
Confidence 9999999999844 5555663
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.93 E-value=1.4e-25 Score=202.35 Aligned_cols=89 Identities=26% Similarity=0.372 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHhcccCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEECcE
Q 004185 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (770)
Q Consensus 179 ~Lt~kE~r~LRklA~~Lkp~V~IGK~GlTe~Vv~eI~~~wk~~ELVKIKi~~~~~~dmk~~ae~Le~kTGg~VV~riG~~ 258 (770)
.||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.+|++++|++|+++|||++||++|++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004185 259 IILYRGADY 267 (770)
Q Consensus 259 iVLYRgkny 267 (770)
+||||++..
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999854
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.93 E-value=1.9e-25 Score=203.49 Aligned_cols=89 Identities=28% Similarity=0.413 Sum_probs=87.1
Q ss_pred cCCHHHHHHHHhcccCCCCeEEeCCCCCCHHHHHHHHHHHHhCCeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEECcE
Q 004185 179 KLSGKELRRLRTLGIGLRKKLKIGKAGITEGIVNGIHERWRHAEVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRSGSK 258 (770)
Q Consensus 179 ~Lt~kE~r~LRklA~~Lkp~V~IGK~GlTe~Vv~eI~~~wk~~ELVKIKi~~~~~~dmk~~ae~Le~kTGg~VV~riG~~ 258 (770)
+||++|+++||++||+|+|+|+|||+|||++|+++|+++|++||||||+|.+++.+|++++|+.|+++|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 004185 259 IILYRGADY 267 (770)
Q Consensus 259 iVLYRgkny 267 (770)
+||||++..
T Consensus 81 ~VLYR~~~~ 89 (104)
T 1rq8_A 81 IVIYRESKE 89 (104)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999863
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=53.10 E-value=32 Score=28.98 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=40.2
Q ss_pred CeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 004185 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (770)
Q Consensus 222 ELVKIKi~~~~~~dmk~~ae~Le~kTGg~VV~ri---G~~iVLYRgkny~~ 269 (770)
++|+.|-......+.++++.+++..-.--+|-+. |.+-|+||.++.++
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~y 51 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNY 51 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCE
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCE
Confidence 4788888777889999999999987777777776 88999999987754
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=34.40 E-value=35 Score=27.86 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=34.7
Q ss_pred eEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 004185 223 VVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (770)
Q Consensus 223 LVKIKi~~~~~~dmk~~ae~Le~kTGg~VV~ri---G~~iVLYRgkny~~ 269 (770)
+|+.|-......+.++++.+++..-.--+|-+. |.+-|+||.++.++
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~y 51 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKY 51 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCE
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 455555556678899999999988777777765 88999999887653
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=30.41 E-value=38 Score=28.57 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=37.7
Q ss_pred CeEEEEEcCCchhhHHHHHHHHHHHhCCeEEEEE---CcEEEEEecCCCCC
Q 004185 222 EVVKIVCEDLCRLNMKRTHDSLERKTGGLVVWRS---GSKIILYRGADYKY 269 (770)
Q Consensus 222 ELVKIKi~~~~~~dmk~~ae~Le~kTGg~VV~ri---G~~iVLYRgkny~~ 269 (770)
++|+.|-......+.++++.+++-.-.--+|-+. |.+-|+||.++.++
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~y 52 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNL 52 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSE
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCE
Confidence 4566666666788999999999987666777776 88999999988764
No 8
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=19.58 E-value=3.3e+02 Score=23.92 Aligned_cols=56 Identities=7% Similarity=-0.118 Sum_probs=48.5
Q ss_pred HHHHHHHhccceEEEEecCCCHHHHHHHHHHHHH---HhCCEEEEeeecccCcEEEEEccCCCC
Q 004185 626 ENMHLHWKHRELVKIISKQRKIEAALQEARTLEV---ESGGILVAVERVNKGYAIILYRGKNYE 686 (770)
Q Consensus 626 e~i~~alk~rELIKV~v~~~~~~d~~eia~~L~~---~sgg~lVqv~k~~iG~~iILYRgkny~ 686 (770)
.+|-++|+....|=|.+.+.+.++.+.+.+.++- ..+|.+.. +|..+.|+=++|..
T Consensus 19 ~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~k-----I~~~IFl~~P~~V~ 77 (87)
T 3p04_A 19 QVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQK-----IDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEE-----EETTEEEEECCCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEE-----EcCCEEEEECCCeE
Confidence 5788999999999999999999999999999876 67888877 47888888877754
No 9
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=18.63 E-value=1.6e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=36.6
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCEEEEeeecccCcEEEEEccCCCC
Q 004185 636 ELVKIISKQRKIEAALQEARTLEVESGGILVAVERVNKGYAIILYRGKNYE 686 (770)
Q Consensus 636 ELIKV~v~~~~~~d~~eia~~L~~~sgg~lVqv~k~~iG~~iILYRgkny~ 686 (770)
++|+.+.-.-.+-.+.+++.+++- +|-.+.-+..-.-|..-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel-~gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMEL-LGHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHH-HTCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHh-CCCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 466777666666678888888876 56666666555679999999988654
No 10
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=17.43 E-value=1.4e+02 Score=29.44 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCceEEeccCCCCHHHHHHHHHHHhc
Q 004185 598 ERYMLRKVGLRMKAFLLMGRRGVFDGTVENMHLHWKH 634 (770)
Q Consensus 598 ER~~LRkig~klkpvv~IGk~Gvtd~vIe~i~~alk~ 634 (770)
|---+..+|.+-+|++.++.+|.++.++.-++.....
T Consensus 127 e~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~ 163 (189)
T 3sbx_A 127 DVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADT 163 (189)
T ss_dssp HHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHC
Done!