Your job contains 1 sequence.
>004187
MASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWK
QYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDF
MLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWK
DYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQ
WIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA
AIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF
LRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEP
AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ
RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDK
SALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGISPSTTATGASSA
LNALSNPMVATGGGGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDI
PTGQMGKSPTTYPTPIPTGAARSASGISGSNKSHPTPSGSSLKQSKDKQSLKRKDIGQDD
DETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVSGDLSGSTG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004187
(770 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 2409 3.9e-250 1
DICTYBASE|DDB_G0286645 - symbol:cstf3 "cleavage stimulati... 1044 3.8e-113 4
UNIPROTKB|E1BGY7 - symbol:CSTF3 "Uncharacterized protein"... 570 7.3e-105 2
UNIPROTKB|Q5F4A0 - symbol:CSTF3 "Uncharacterized protein"... 884 2.4e-91 2
ZFIN|ZDB-GENE-040426-1997 - symbol:cstf3 "cleavage stimul... 887 3.8e-91 2
UNIPROTKB|E2R479 - symbol:CSTF3 "Uncharacterized protein"... 884 1.6e-88 1
UNIPROTKB|Q12996 - symbol:CSTF3 "Cleavage stimulation fac... 884 1.6e-88 1
MGI|MGI:1351825 - symbol:Cstf3 "cleavage stimulation fact... 884 1.6e-88 1
WB|WBGene00006307 - symbol:suf-1 species:6239 "Caenorhabd... 812 6.6e-81 1
RGD|1305901 - symbol:Cstf3 "cleavage stimulation factor, ... 796 3.3e-79 1
FB|FBgn0003559 - symbol:su(f) "suppressor of forked" spec... 528 1.3e-55 3
UNIPROTKB|G4N9J4 - symbol:MGG_03265 "mRNA 3'-end-processi... 380 6.7e-44 2
POMBASE|SPAC6F12.17 - symbol:rna14 "mRNA cleavage and pol... 480 1.7e-43 1
SGD|S000004665 - symbol:RNA14 "Component of the cleavage ... 282 3.1e-36 2
CGD|CAL0005466 - symbol:orf19.1531 species:5476 "Candida ... 329 4.1e-35 2
ASPGD|ASPL0000073973 - symbol:AN4892 species:162425 "Emer... 400 6.5e-33 2
UNIPROTKB|E9PLP8 - symbol:CSTF3 "Cleavage stimulation fac... 257 4.8e-21 1
UNIPROTKB|I3LMS1 - symbol:I3LMS1 "Uncharacterized protein... 232 2.3e-18 1
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac... 163 1.7e-16 2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein... 162 2.1e-16 2
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein... 146 2.7e-16 2
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa... 158 3.5e-16 2
MGI|MGI:104602 - symbol:Prpf39 "PRP39 pre-mRNA processing... 155 4.6e-16 2
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein... 162 5.5e-16 2
UNIPROTKB|A8E4M9 - symbol:PRPF39 "Uncharacterized protein... 165 3.5e-14 2
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 210 1.6e-13 1
POMBASE|SPBC4B4.09 - symbol:usp105 "U1 snRNP-associated p... 142 1.8e-12 2
DICTYBASE|DDB_G0291836 - symbol:DDB_G0291836 "Squamous ce... 178 4.2e-12 2
UNIPROTKB|G4MRU5 - symbol:MGG_04558 "Pre-mRNA-processing ... 182 1.8e-10 1
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 175 5.3e-10 1
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 178 6.3e-10 1
UNIPROTKB|D4A0B1 - symbol:D4A0B1 "Uncharacterized protein... 123 7.8e-10 2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 177 8.7e-10 1
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 177 1.0e-09 1
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 118 1.3e-09 2
FB|FBgn0039600 - symbol:CG1646 species:7227 "Drosophila m... 133 2.5e-09 2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 168 7.9e-09 1
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 168 7.9e-09 1
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 168 8.2e-09 1
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 166 1.4e-08 1
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 165 2.0e-08 1
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 163 3.1e-08 1
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 158 3.4e-08 2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 163 3.6e-08 1
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 163 3.7e-08 1
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 142 4.2e-08 3
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 142 4.2e-08 3
TAIR|locus:2135892 - symbol:EMB140 "EMBRYO DEFECTIVE 140"... 159 9.5e-08 1
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 143 1.4e-07 2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 154 2.5e-07 1
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 147 1.4e-06 1
DICTYBASE|DDB_G0277977 - symbol:xab2 "TPR-like helical do... 106 3.5e-06 2
DICTYBASE|DDB_G0283307 - symbol:prpf39 "pre-mRNA processi... 149 4.7e-06 2
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer... 108 8.9e-06 2
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 138 1.4e-05 2
ZFIN|ZDB-GENE-030616-420 - symbol:prpf39 "PRP39 pre-mRNA ... 136 2.6e-05 1
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 123 0.00013 2
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 126 0.00029 1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 100 0.00037 3
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 114 0.00038 2
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein... 131 0.00044 2
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 99 0.00046 3
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 99 0.00047 3
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 99 0.00047 3
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 99 0.00059 3
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi... 112 0.00088 2
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 2409 (853.1 bits), Expect = 3.9e-250, P = 3.9e-250
Identities = 458/651 (70%), Positives = 528/651 (81%)
Query: 17 VADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATK 76
+ADKY VE AE LA ALH P+AQA PIYEQLLS++PT+A+FWKQYVEA MAVNNDDATK
Sbjct: 1 MADKYIVEEAEALAKRALHSPIAQATPIYEQLLSLYPTSARFWKQYVEAQMAVNNDDATK 60
Query: 77 QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWL 136
Q+FSRCLL CLQVPLW+CYIRFIRKVY+KKG EGQEET KAF+FML+++G+DI+SGPIW
Sbjct: 61 QIFSRCLLTCLQVPLWQCYIRFIRKVYDKKGAEGQEETTKAFEFMLNYIGTDIASGPIWT 120
Query: 137 EYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKG 196
EYI FLKSLPALN E+ R A+RK Y RA++TPTHHVEQLWKDYENFEN+V+RQLAKG
Sbjct: 121 EYIAFLKSLPALNLNEDLHRKTALRKVYHRAILTPTHHVEQLWKDYENFENTVNRQLAKG 180
Query: 197 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 256
L++EYQ K+ SARAVYRERKKY EEIDWNMLAVPPTG+ KEE QW+AWK+ L+FEKGNPQ
Sbjct: 181 LVNEYQPKFNSARAVYRERKKYIEEIDWNMLAVPPTGTSKEETQWVAWKKFLSFEKGNPQ 240
Query: 257 RIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSE 316
RIDTASS KRII+ YEQCLM LYHYPD+WYDYA W+ KSGS DAAIKVFQRALKA+PDSE
Sbjct: 241 RIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVFQRALKAIPDSE 300
Query: 317 MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLD 376
ML+YAFAE+EESRGAI +AKKLYE++L S N+ LAHIQ++RFLRR EGVEAARKYFLD
Sbjct: 301 MLKYAFAEMEESRGAIQSAKKLYENILGASTNS--LAHIQYLRFLRRAEGVEAARKYFLD 358
Query: 377 ARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDD 436
ARKSP+ TYHVY+A+A MAFC DK+PK+AHN+FE GLK +M EP YIL+YADFL+RLNDD
Sbjct: 359 ARKSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADFLTRLNDD 418
Query: 437 RNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASA 496
RNIRALFERALS+LP E+S EVWKRF QFEQ YGDL S LKVEQR KEALS GEEG+S
Sbjct: 419 RNIRALFERALSTLPVEDSAEVWKRFIQFEQTYGDLASILKVEQRMKEALSGKGEEGSSP 478
Query: 497 LEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDKGPSG 556
E SLQDVVSRYS+MDLWPC+S DLDHL RQE LVKN+NKK K+ L + P +
Sbjct: 479 PESSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAGKTNLPHVPAAI------ 532
Query: 557 LTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIXXXXXXXXXXXXXXXXXXXMVATGGGGI 616
+ +S+ V+YPDTSQMV+ DP +K + AT G
Sbjct: 533 --GSVASSSKVVYPDTSQMVVQDPTKKSEFA---SSANPVAASASNTFPSTVTATATHGS 587
Query: 617 MNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGK 667
+ FDE+ K PA+ AFLANLP V+GPTPNVD+VLSICLQSD PTGQ K
Sbjct: 588 ASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVK 638
Score = 390 (142.3 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 97/220 (44%), Positives = 119/220 (54%)
Query: 554 PSGLTSNSTTSATVIYPDTSQMVIYDPRQKPGIGIXXXXXXXXXXXXXXXXXXXMVATGG 613
P+ + S +++S V+YPDTSQMV+ DP +K + AT
Sbjct: 529 PAAIGSVASSSK-VVYPDTSQMVVQDPTKKSEFA---SSANPVAASASNTFPSTVTATAT 584
Query: 614 GGIMNPFDEMLKAASPAIFAFLANLPAVEGPTPNVDIVLSICLQSDIPTGQMGKSPTTYP 673
G + FDE+ K PA+ AFLANLP V+GPTPNVD+VLSICLQSD PTGQ K
Sbjct: 585 HGSASTFDEIPKTTPPALVAFLANLPIVDGPTPNVDVVLSICLQSDFPTGQTVKQSFAAK 644
Query: 674 TPIPTXXXXXXXXXXXXNKSHPTPXXXXXXXXXXXXXXXXXXIGQDDDETTTVQSQPQPR 733
P+ + S PT Q++D+T TVQSQP P
Sbjct: 645 GNPPSQN----------DPSGPTRGVSQRLPRDRRATKRKDSDRQEEDDTATVQSQPLPT 694
Query: 734 DFFRIRQMKKARG-AASSQT--GSASYGSAVSGDLSGSTG 770
D FR+RQM+KARG A SSQT GS SYGSA SG+LSGSTG
Sbjct: 695 DVFRLRQMRKARGIATSSQTPTGSTSYGSAFSGELSGSTG 734
>DICTYBASE|DDB_G0286645 [details] [associations]
symbol:cstf3 "cleavage stimulation factor subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0286645
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0006378 GO:GO:0003723
EMBL:AAFI02000089 Gene3D:1.25.40.10 GO:GO:0006379 eggNOG:COG5107
KO:K14408 RefSeq:XP_637594.1 ProteinModelPortal:Q54LG7 PRIDE:Q54LG7
EnsemblProtists:DDB0233707 GeneID:8625734 KEGG:ddi:DDB_G0286645
InParanoid:Q54LG7 OMA:MARDIFE ProtClustDB:CLSZ2430079
Uniprot:Q54LG7
Length = 1065
Score = 1044 (372.6 bits), Expect = 3.8e-113, Sum P(4) = 3.8e-113
Identities = 216/524 (41%), Positives = 319/524 (60%)
Query: 5 SVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVE 64
+V+ E+ EN D Y+ E +L N P++ A IY++ LSVFPTA ++WK YVE
Sbjct: 162 NVQIETLENRIN-NDMYDTEAWTLLLNEVQSQPISIARDIYKRFLSVFPTAGRYWKLYVE 220
Query: 65 AYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSH 124
M N D +++F L V W+ YI +I+++ K E +EE KAF+F L
Sbjct: 221 EEMKEKNYDIVEKIFFENLRSVKNVEFWKSYIAYIKQIKGDK-VENREEIIKAFEFALES 279
Query: 125 VGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYEN 184
+G DISS IW +YI FLK A EE Q+M AIRK YQRA+ P H ++ ++K+YE
Sbjct: 280 IGMDISSTSIWTDYIQFLKDEKASTQFEEGQKMTAIRKLYQRAIENPMHDLDNIYKEYEV 339
Query: 185 FENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAW 244
+ENS+++ LAK LLS++Q KY AR VYR+RK E I NMLA PP S KEE Q W
Sbjct: 340 YENSINKTLAKALLSDHQGKYQHARNVYRDRKSLLEGILRNMLAKPPRSSDKEEHQVRLW 399
Query: 245 KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKV 304
++L+T+E+ NPQ+ D + R+I TY QCL+ LYHYPDIWY+ AT+ A G I +
Sbjct: 400 RKLITYERSNPQKFDAVTLRNRVIATYNQCLLCLYHYPDIWYEAATYLADCGDSSGCIAM 459
Query: 305 FQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
F R+L ALP + + +A+A+ ES+ AK++YE +L N L IQ+++F RRT
Sbjct: 460 FDRSLIALPKNLFIHFAYADYLESQKKQPQAKEIYEKIL--QANPEPLVWIQYMKFSRRT 517
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
E +E RK F A+ +P+ TYHVY+A L+ + ++D ++A ++FE GLK+F E A++
Sbjct: 518 ERIEGPRKIFKRAKSTPDCTYHVYIALGLIEYYINQDTRMARDIFEIGLKKFPSEIAFVN 577
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYG-DLDSTLKVEQRRK 483
Y +FL+ LN++ N R LFE+ L+ E+S +W++F FE D+ S LK+E+R +
Sbjct: 578 FYIEFLTNLNEENNTRVLFEKLLTWPSLEKSESIWRKFLDFEYRQNQDVSSILKLEKRYQ 637
Query: 484 EAL-SRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
+ S T + G LQ ++RY F++LW C +++ + +
Sbjct: 638 VTVNSNTDKSGV------LQ-ALNRYKFLNLWSCHPTEIEIITK 674
Score = 40 (19.1 bits), Expect = 3.8e-113, Sum P(4) = 3.8e-113
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 631 IFAFLANLPAVE---GPTPNVDIVLSICLQSDIP 661
IF FL NLP+ + GP + + ++ I + +P
Sbjct: 850 IFYFLQNLPSNQSFMGPYIDPEQLIGIIRDTPLP 883
Score = 39 (18.8 bits), Expect = 3.8e-113, Sum P(4) = 3.8e-113
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 718 QDDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSASYGSAVS 762
Q DDE+ Q Q P +Q ++ + ++ T + S S ++
Sbjct: 963 QPDDESNNEQQQQPPPQQPPQQQQEQQQQPPTTTTATTSVVSPIT 1007
Score = 38 (18.4 bits), Expect = 3.8e-113, Sum P(4) = 3.8e-113
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 517 SSKDLDHLVRQEWLVK-NINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQM 575
+ KD + +E V ++KK + P I K P+ T T++ V PD +QM
Sbjct: 710 TEKDQGAIDGKEGAVAAKLHKKGKGKEIKPVPQIESK-PTFSTIIPTSNWKVKKPDITQM 768
Query: 576 V 576
V
Sbjct: 769 V 769
>UNIPROTKB|E1BGY7 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:DAAA02041256 EMBL:DAAA02041257
IPI:IPI00709818 Ensembl:ENSBTAT00000011369 Uniprot:E1BGY7
Length = 718
Score = 570 (205.7 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 105/279 (37%), Positives = 172/279 (61%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 90 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 148
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 149 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 208
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R D
Sbjct: 209 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 268
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI 298
KR++F YEQCL+ L H+PDIWY+ A + +S +
Sbjct: 269 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 307
Score = 488 (176.8 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 127/349 (36%), Positives = 181/349 (51%)
Query: 259 DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDA----AIKVFQ-----RAL 309
D KR++F YEQCL+ L H+PDIWY+ A + +S + A ++ F L
Sbjct: 268 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGVSVHFFPPFWSFHEL 327
Query: 310 KA-------LPDSEMLRYAFAELEESRGAIAAAKKLYESLLT-DSVNTTALAHIQFIRFL 361
K L D +L Y + E SR +Y LL + ++ T L +IQ+++F
Sbjct: 328 KLESYVTMNLSDPIILFYVYTYDESSRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFA 386
Query: 362 RRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPA 421
RR EG+++ R F AR+ +HVYV ALM + ++D +A +FE GLK++ P
Sbjct: 387 RRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCNRDKSVAFKIFELGLKKYGDIPE 446
Query: 422 YILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLKVE 479
Y+L Y D+LS LN+D N R LFER L+S LPPE+S E+W RF FE GDL S LKVE
Sbjct: 447 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 506
Query: 480 QRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVD 539
+RR A E +AL +V RY FMDL+PCS+ +L L K++++
Sbjct: 507 KRRFTAFKEEYEGKETAL------LVDRYKFMDLYPCSASELKALG-----YKDVSR-AK 554
Query: 540 KSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
+A+ P + L PDT QM+ + PR PG+
Sbjct: 555 LAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 603
>UNIPROTKB|Q5F4A0 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF GeneTree:ENSGT00390000006758
EMBL:AADN02065603 EMBL:AJ851400 IPI:IPI00592390
RefSeq:NP_001012586.1 UniGene:Gga.22714 SMR:Q5F4A0 STRING:Q5F4A0
Ensembl:ENSGALT00000019104 GeneID:421595 KEGG:gga:421595
InParanoid:Q5F4A0 NextBio:20824338 Uniprot:Q5F4A0
Length = 718
Score = 884 (316.2 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
Identities = 198/584 (33%), Positives = 314/584 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 31 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 90
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 91 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 149
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 150 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 209
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R D
Sbjct: 210 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 269
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIKVF 305
KR++F YEQCL+ L H+PDIWY+ A + +S + D A ++
Sbjct: 270 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 329
Query: 306 QRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
+RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F RR
Sbjct: 330 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 389
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y+L
Sbjct: 390 EGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 449
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y D+LS LN+D N R LFER L+S + + + +F ++ + + K
Sbjct: 450 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKR 508
Query: 485 ALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 544
+ EE E +L +V RY FMDL+PCS+ +L L K++++ +A+
Sbjct: 509 RFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKLAAII 559
Query: 545 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
P + L PDT QM+ + PR PG+
Sbjct: 560 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 603
Score = 46 (21.3 bits), Expect = 2.4e-91, Sum P(2) = 2.4e-91
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 719 DDDETTTVQSQPQPRDFFRIRQMKKAR 745
DD+E +V P D +R RQ K+ R
Sbjct: 694 DDEEKGSVV--PPVHDIYRARQQKRIR 718
>ZFIN|ZDB-GENE-040426-1997 [details] [associations]
symbol:cstf3 "cleavage stimulation factor, 3'
pre-RNA, subunit 3" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
ZFIN:ZDB-GENE-040426-1997 GO:GO:0005634 GO:GO:0006397
Gene3D:1.25.40.10 CTD:1479 HOGENOM:HOG000231786 HOVERGEN:HBG053813
KO:K14408 EMBL:BC045871 IPI:IPI00497601 RefSeq:NP_998218.2
UniGene:Dr.104620 ProteinModelPortal:Q7ZVG5 SMR:Q7ZVG5
STRING:Q7ZVG5 PRIDE:Q7ZVG5 GeneID:406326 KEGG:dre:406326
InParanoid:Q7ZVG5 NextBio:20817950 ArrayExpress:Q7ZVG5 Bgee:Q7ZVG5
Uniprot:Q7ZVG5
Length = 716
Score = 887 (317.3 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 199/584 (34%), Positives = 313/584 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 90 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMPQAYDFALDKIGMEIMSYQIWVDYIN 148
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 149 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYSKYEEGINVHLAKKMIED 208
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP S +E QQ WK+ + +EK NP R D
Sbjct: 209 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNSPQEAQQVEMWKKYIQWEKSNPLRTED 268
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIKVF 305
KR++F YEQCL+ L H+PDIWY+ A + +S + D A ++
Sbjct: 269 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 328
Query: 306 QRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
+RA+ L ML Y +FA+ EESR +Y LL L +IQ+++F RR
Sbjct: 329 ERAIGTLLKKNMLLYFSFADYEESRMKHEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 388
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EG+++ R F AR+ P +HVYV ALM + KD +A +FE GLK++ P YIL
Sbjct: 389 EGIKSGRSIFKKAREDPRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYIL 448
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y D+LS LN+D N R LFER L+S + + + +F ++ + + +
Sbjct: 449 AYIDYLSHLNEDNNTRVLFERVLTSGSLSPE-KSGEIWARFLAFESNIGDLASILKVERR 507
Query: 485 ALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 544
+E E +L +V RY FMDL+PCS +L L K++++ S +
Sbjct: 508 RFMAFKDE-YEGKETAL--LVDRYKFMDLYPCSPSELKALG-----YKDVSRAKYASLIP 559
Query: 545 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
+V L + PDT QM+ + PR PG+
Sbjct: 560 EA--VVAPSTPALKDEADRKPEYPKPDTCQMIPFQPRHLAPPGL 601
Score = 41 (19.5 bits), Expect = 3.8e-91, Sum P(2) = 3.8e-91
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 720 DDETTTVQSQPQPRDFFRIRQMKKAR 745
D+E P D +R RQ K+ R
Sbjct: 691 DEEEDKGSIAPPIHDIYRARQQKRIR 716
>UNIPROTKB|E2R479 [details] [associations]
symbol:CSTF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 CTD:1479 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:AAEX03011399 RefSeq:XP_533159.2
ProteinModelPortal:E2R479 Ensembl:ENSCAFT00000011665 GeneID:475948
KEGG:cfa:475948 NextBio:20851693 Uniprot:E2R479
Length = 717
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 198/584 (33%), Positives = 314/584 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 90 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 148
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 149 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 208
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R D
Sbjct: 209 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 268
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIKVF 305
KR++F YEQCL+ L H+PDIWY+ A + +S + D A ++
Sbjct: 269 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 328
Query: 306 QRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
+RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F RR
Sbjct: 329 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 388
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y+L
Sbjct: 389 EGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 448
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y D+LS LN+D N R LFER L+S + + + +F ++ + + K
Sbjct: 449 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKR 507
Query: 485 ALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 544
+ EE E +L +V RY FMDL+PCS+ +L L K++++ +A+
Sbjct: 508 RFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKLAAII 558
Query: 545 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
P + L PDT QM+ + PR PG+
Sbjct: 559 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>UNIPROTKB|Q12996 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0006379 "mRNA
cleavage" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
GO:GO:0005654 EMBL:CH471064 Reactome:REACT_1675 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006379
GO:GO:0006369 Reactome:REACT_78 EMBL:U15782 EMBL:AK290836
EMBL:AC131263 EMBL:AL121926 EMBL:BC009792 EMBL:BC010533
EMBL:BC059948 EMBL:BC108319 EMBL:BM014288 IPI:IPI00015195
IPI:IPI00382661 IPI:IPI00651748 PIR:S50852 RefSeq:NP_001028677.1
RefSeq:NP_001028678.1 RefSeq:NP_001317.1 UniGene:Hs.44402
ProteinModelPortal:Q12996 SMR:Q12996 DIP:DIP-48674N IntAct:Q12996
STRING:Q12996 PhosphoSite:Q12996 DMDM:71153231 PaxDb:Q12996
PeptideAtlas:Q12996 PRIDE:Q12996 DNASU:1479 Ensembl:ENST00000323959
Ensembl:ENST00000431742 Ensembl:ENST00000438862 GeneID:1479
KEGG:hsa:1479 UCSC:uc001muh.3 CTD:1479 GeneCards:GC11M033106
H-InvDB:HIX0021822 HGNC:HGNC:2485 HPA:HPA039743 HPA:HPA040168
MIM:600367 neXtProt:NX_Q12996 PharmGKB:PA26987 eggNOG:COG5107
HOGENOM:HOG000231786 HOVERGEN:HBG053813 InParanoid:Q12996 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF PhylomeDB:Q12996 GenomeRNAi:1479
NextBio:6077 PMAP-CutDB:Q12996 ArrayExpress:Q12996 Bgee:Q12996
CleanEx:HS_CSTF3 Genevestigator:Q12996 GermOnline:ENSG00000176102
Uniprot:Q12996
Length = 717
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 198/584 (33%), Positives = 314/584 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 90 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 148
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 149 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 208
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R D
Sbjct: 209 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 268
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIKVF 305
KR++F YEQCL+ L H+PDIWY+ A + +S + D A ++
Sbjct: 269 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 328
Query: 306 QRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
+RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F RR
Sbjct: 329 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 388
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y+L
Sbjct: 389 EGIKSGRMIFKKAREDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 448
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y D+LS LN+D N R LFER L+S + + + +F ++ + + K
Sbjct: 449 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKR 507
Query: 485 ALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 544
+ EE E +L +V RY FMDL+PCS+ +L L K++++ +A+
Sbjct: 508 RFTAFKEE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKLAAII 558
Query: 545 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
P + L PDT QM+ + PR PG+
Sbjct: 559 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>MGI|MGI:1351825 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA,
subunit 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843
SMART:SM00386 MGI:MGI:1351825 GO:GO:0005634 GO:GO:0006397 CTD:1479
eggNOG:COG5107 HOGENOM:HOG000231786 HOVERGEN:HBG053813 KO:K14408
OMA:IAFRIFE OrthoDB:EOG47H5PF EMBL:BC003241 IPI:IPI00116929
RefSeq:NP_663504.1 UniGene:Mm.259876 UniGene:Mm.479443 PDB:2OND
PDB:2OOE PDBsum:2OND PDBsum:2OOE ProteinModelPortal:Q99LI7
SMR:Q99LI7 STRING:Q99LI7 PhosphoSite:Q99LI7 PaxDb:Q99LI7
PRIDE:Q99LI7 Ensembl:ENSMUST00000028599 GeneID:228410
KEGG:mmu:228410 GeneTree:ENSGT00390000006758 InParanoid:Q99LI7
ChiTaRS:CSTF3 EvolutionaryTrace:Q99LI7 NextBio:378988 Bgee:Q99LI7
Genevestigator:Q99LI7 GermOnline:ENSMUSG00000027176 Uniprot:Q99LI7
Length = 717
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 198/584 (33%), Positives = 314/584 (53%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 30 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 89
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 90 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 148
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++ +
Sbjct: 149 FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 208
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R D
Sbjct: 209 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTED 268
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIKVF 305
KR++F YEQCL+ L H+PDIWY+ A + +S + D A ++
Sbjct: 269 QTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 328
Query: 306 QRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRT 364
+RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F RR
Sbjct: 329 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 388
Query: 365 EGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y+L
Sbjct: 389 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 448
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
Y D+LS LN+D N R LFER L+S + + + +F ++ + + K
Sbjct: 449 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARFLAFESNIGDLASILKVEKR 507
Query: 485 ALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALS 544
+ EE E +L +V RY FMDL+PCS+ +L L K++++ +A+
Sbjct: 508 RFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG-----YKDVSR-AKLAAII 558
Query: 545 NGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--KPGI 586
P + L PDT QM+ + PR PG+
Sbjct: 559 PDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGL 602
>WB|WBGene00006307 [details] [associations]
symbol:suf-1 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 GO:GO:0005634
GO:GO:0009792 GO:GO:0006397 GO:GO:0000003 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:Z68315 PIR:T21484
RefSeq:NP_495825.1 ProteinModelPortal:Q19866 SMR:Q19866
STRING:Q19866 EnsemblMetazoa:F28C6.6.1 EnsemblMetazoa:F28C6.6.2
GeneID:174380 KEGG:cel:CELE_F28C6.6 UCSC:F28C6.6.1 CTD:174380
WormBase:F28C6.6 InParanoid:Q19866 NextBio:883790
ArrayExpress:Q19866 Uniprot:Q19866
Length = 735
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 178/519 (34%), Positives = 289/519 (55%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
++V+ +L P+ Q YE L+ FP + ++WK Y+E + N + ++LFS
Sbjct: 18 FDVDAWNLLLREHQSRPIDQERDFYESLVKQFPNSGRYWKAYIEHELRSKNFENVEKLFS 77
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQ--EETRKAFDFMLSHVGSDISSGPIWLEY 138
RCL+ L + LW+CYI + V+E KG Q EE KA+DF L VG D+ + I+ EY
Sbjct: 78 RCLVSVLNIDLWKCYIHY---VFETKGQRDQYREEMAKAYDFALEKVGMDVQAYSIFTEY 134
Query: 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLL 198
I FLK +PA+ E+QR+ A+RK YQ+A+ TP H++E +W DY +E +++ LA+ L+
Sbjct: 135 IAFLKKVPAVGQYAENQRITAVRKIYQKALATPMHNLELIWNDYCTYEKAINITLAEKLI 194
Query: 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+E +Y +AR V ++ ++ ++ ++VPP G+ E +Q WK L+ +EK NP +
Sbjct: 195 AERGKEYQNARRVEKDLQQMTRGLNRQAVSVPPKGTATEFKQVELWKNLIAWEKTNPLQT 254
Query: 259 DTASSN-KRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-------GSIDAA-------IK 303
+ + +R+++TYEQ L+ L +YPDIWY+ A + ++ G + A I
Sbjct: 255 EEYGQHARRVVYTYEQSLLCLGYYPDIWYEAAMFLQEASHTLDEKGDVKMAQVLKLETIS 314
Query: 304 VFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
+++RA+ L +S++L +A+A+ +E A K +Y+ LL L ++Q +RF+R
Sbjct: 315 LYERAITGLMKESKLLYFAYADFQEEHKQFEAVKNIYDRLLGIEHINPTLTYVQLMRFIR 374
Query: 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422
R+EG AR F AR+ Y V+VA AL+ + KD ++A VF+ GLK++ +EP +
Sbjct: 375 RSEGPNNARLVFKRAREDKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKYENEPEF 434
Query: 423 ILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRR 482
L YADFLS LN+D N R +FER L+S + + + +F + + +
Sbjct: 435 GLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSI-RIWDRFLDFESCVGDLASILKVE 493
Query: 483 KEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDL 521
K + E + V+ RY FMDL PCS + L
Sbjct: 494 KRRKTAYEEAQKDQTMNHSMLVIDRYKFMDLMPCSGEQL 532
Score = 440 (159.9 bits), Expect = 9.0e-39, P = 9.0e-39
Identities = 112/292 (38%), Positives = 164/292 (56%)
Query: 302 IKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLL-TDSVNTTALAHIQFIR 359
I +++RA+ L +S++L +A+A+ +E A K +Y+ LL + +N T L ++Q +R
Sbjct: 313 ISLYERAITGLMKESKLLYFAYADFQEEHKQFEAVKNIYDRLLGIEHINPT-LTYVQLMR 371
Query: 360 FLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHE 419
F+RR+EG AR F AR+ Y V+VA AL+ + KD ++A VF+ GLK++ +E
Sbjct: 372 FIRRSEGPNNARLVFKRAREDKRTGYQVFVAAALLEYNCMKDKEVAIRVFKLGLKKYENE 431
Query: 420 PAYILEYADFLSRLNDDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLK 477
P + L YADFLS LN+D N R +FER L+S LP ++SI +W RF FE GDL S LK
Sbjct: 432 PEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLASILK 491
Query: 478 VEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKK 537
VE+RRK A ++ + S+ V+ RY FMDL PCS + L L+ L K
Sbjct: 492 VEKRRKTAYEEAQKD--QTMNHSML-VIDRYKFMDLMPCSGEQLK-LIGYNAL-KGTESI 546
Query: 538 VDKSALSNGPGIVDKGP---SGLTSNSTTSATVI-Y----PDTSQMVIYDPR 581
S + + + GP S + + A V Y PD SQM+ + PR
Sbjct: 547 AGPSFVGS-KNVPTHGPQAASAIMGGAGGHADVARYGFPRPDISQMIPFKPR 597
>RGD|1305901 [details] [associations]
symbol:Cstf3 "cleavage stimulation factor, 3' pre-RNA, subunit
3, 77kDa" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR003107
InterPro:IPR008847 Pfam:PF05843 SMART:SM00386 RGD:1305901
GO:GO:0005634 GO:GO:0006397 GeneTree:ENSGT00390000006758
IPI:IPI00373657 Ensembl:ENSRNOT00000016318 UCSC:RGD:1305901
Uniprot:F1M4W7
Length = 647
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 183/543 (33%), Positives = 286/543 (52%)
Query: 62 YVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFM 121
YV + N D ++LF RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF
Sbjct: 1 YVSLQIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFA 59
Query: 122 LSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKD 181
L +G +I S IW++YI FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+D
Sbjct: 60 LDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 119
Query: 182 YENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQW 241
Y +E ++ LAK ++ + Y +AR V +E + + +D N +VPP + +E QQ
Sbjct: 120 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 179
Query: 242 IAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI-- 298
WK+ + +EK NP R D KR++F YEQCL+ L H+PDIWY+ A + +S +
Sbjct: 180 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 239
Query: 299 ------------DAAIKVFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTD 345
D A +++RA+ L ML Y A+A+ EESR +Y LL
Sbjct: 240 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 299
Query: 346 SVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLA 405
L +IQ+++F RR EG+++ R F AR+ +HVYV ALM + KD +A
Sbjct: 300 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 359
Query: 406 HNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465
+FE GLK++ P Y+L Y D+LS LN+D N R LFER L+S + + + +F
Sbjct: 360 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE-KSGEIWARF 418
Query: 466 EQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLV 525
++ + + K + EE E +L +V RY FMDL+PCS+ +L L
Sbjct: 419 LAFESNIGDLASILKVEKRRFTAFREE-YEGKETAL--LVDRYKFMDLYPCSASELKALG 475
Query: 526 RQEWLVKNINKKVDKSALSNGPGIVDKGPSGLTSNSTTSATVIYPDTSQMVIYDPRQ--K 583
K++++ +A+ P + L PDT QM+ + PR
Sbjct: 476 -----YKDVSR-AKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP 529
Query: 584 PGI 586
PG+
Sbjct: 530 PGL 532
>FB|FBgn0003559 [details] [associations]
symbol:su(f) "suppressor of forked" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005848
"mRNA cleavage stimulating factor complex" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0016070 "RNA metabolic process" evidence=NAS]
InterPro:IPR003107 InterPro:IPR008847 Pfam:PF05843 SMART:SM00386
EMBL:CM000460 GO:GO:0006379 eggNOG:COG5107 KO:K14408 OMA:IAFRIFE
GeneTree:ENSGT00390000006758 EMBL:X62679 EMBL:BT012671
EMBL:BT021384 EMBL:AY102664 PIR:A46389 PIR:B46389
RefSeq:NP_001015240.1 RefSeq:NP_001015241.3 RefSeq:NP_001104479.1
RefSeq:NP_001104480.2 UniGene:Dm.8029 ProteinModelPortal:P25991
SMR:P25991 DIP:DIP-22591N IntAct:P25991 MINT:MINT-312459
STRING:P25991 PaxDb:P25991 EnsemblMetazoa:FBtr0113732
EnsemblMetazoa:FBtr0306544 GeneID:3354994 KEGG:dme:Dmel_CG17170
CTD:252748 FlyBase:FBgn0003559 InParanoid:P25991 OrthoDB:EOG4V15FR
PhylomeDB:P25991 GenomeRNAi:3354994 NextBio:850013 Bgee:P25991
GO:GO:0005848 Uniprot:P25991
Length = 765
Score = 528 (190.9 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 98/267 (36%), Positives = 166/267 (62%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y++E+ ++ A P+ + +YE L++VFPT A++WK Y+E M + ++LF
Sbjct: 31 YDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQ 90
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+ Y+ ++++ T +E+ +A+DF L +G D+ S IW +YI
Sbjct: 91 RCLVKILNIDLWKLYLTYVKETKSGLSTH-KEKMAQAYDFALEKIGMDLHSFSIWQDYIY 149
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ + A+ E+Q++ A+R+ YQ+AVVTP +EQLWKDY FE +++ +++ + E
Sbjct: 150 FLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMSLE 209
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI-D 259
Y +AR V +E + + + ++ N+ AVPPT + +E +Q WKR +T+EK NP R D
Sbjct: 210 RSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPLRTED 269
Query: 260 TASSNKRIIFTYEQCLMYLYHYPDIWY 286
TA +R++F EQCL+ L H+P +W+
Sbjct: 270 TALVTRRVMFATEQCLLVLTHHPAVWH 296
Score = 477 (173.0 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 153/509 (30%), Positives = 249/509 (48%)
Query: 91 LWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSL-PA 147
+W+ YI F+R V E G E Q+ T + + V + +W +YI F +++ P
Sbjct: 143 IWQDYIYFLRGV-EAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPI 201
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQ------LAKGLLSEY 201
++ + +R A +R +H + L ++ +++++ L K ++
Sbjct: 202 ISEKMSLERSKDYMNA-RRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYE 260
Query: 202 QSK--YTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRID 259
+S T A+ R + E +L P ++ Q R+LT EKG ++
Sbjct: 261 KSNPLRTEDTALVTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLT-EKGVRTSVE 319
Query: 260 TASSNK--RIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKA-LPDSE 316
S ++ E + + + W+ AK + D + +R++ L +
Sbjct: 320 NISPILCVPVVNQIEWVMAFAW-----WWAKDVQAAKIFA-DECANILERSINGVLNRNA 373
Query: 317 MLRYAFAELEESRGAIAAAKKLYESLLT-DSVNTTALAHIQFIRFLRRTEGVEAARKYFL 375
+L +A+A+ EE R +Y LL ++ T L ++Q+++F RR EG+++AR F
Sbjct: 374 LLYFAYADFEEGRLKYEKVHTMYNKLLQLPDIDPT-LVYVQYMKFARRAEGIKSARSIFK 432
Query: 376 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435
AR+ YH++VA ALM + KD ++A +FE GLKRF P Y++ Y D+LS LN+
Sbjct: 433 KAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDYLSHLNE 492
Query: 436 DRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE-E 492
D N R LFER LSS L P +S+EVW RF +FE GDL S +KVE+RR E E
Sbjct: 493 DNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERRRSAVFENLKEYE 552
Query: 493 GASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEWLVKNINKKVDKSALSNGPGIVDK 552
G +++ Q +V RY F+DL+PC+S +L + E V I KV A S G V+
Sbjct: 553 G----KETAQ-LVDRYKFLDLYPCTSTELKSIGYAE-NVGIILNKVGGGAQSQNTGEVE- 605
Query: 553 GPSGLTSNSTTSATVIYPDTSQMVIYDPR 581
++S + + PD SQM+ + PR
Sbjct: 606 ------TDSEATPPLPRPDFSQMIPFKPR 628
Score = 51 (23.0 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 717 GQD-DDETTTVQSQPQPRDFFRIRQMKK 743
G D DDE T + P D +R+RQ+K+
Sbjct: 735 GDDSDDELQT--AVPPSHDIYRLRQLKR 760
Score = 48 (22.0 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 629 PAIFAFLANLP---AVEGPTPNVDIVLSICLQSDIP 661
PA+ A A LP + GP +V+++ I ++ ++P
Sbjct: 647 PALAALCATLPPPNSFRGPFVSVELLFDIFMRLNLP 682
>UNIPROTKB|G4N9J4 [details] [associations]
symbol:MGG_03265 "mRNA 3'-end-processing protein RNA-14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF05843 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:CM001234 KO:K14408
RefSeq:XP_003716705.1 EnsemblFungi:MGG_03265T0 GeneID:2676854
KEGG:mgr:MGG_03265 Uniprot:G4N9J4
Length = 1057
Score = 380 (138.8 bits), Expect = 6.7e-44, Sum P(2) = 6.7e-44
Identities = 87/308 (28%), Positives = 160/308 (51%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ Q ++E+ L+VFP AA+ W QY + ++ N + +F + L+ V LW Y+
Sbjct: 197 IEQCRDVFERFLAVFPHAAEVWVQYADMELSQGNFVEAEAIFGKSLMSVPNVQLWTVYLD 256
Query: 98 FIRKVYEKKGTEGQ--EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NAQE 152
+IR+ + + G+ + +A+DF++ +VG D + IW +YI F++ P + +A +
Sbjct: 257 YIRRRNDLNDSSGRARQVVTQAYDFVIDNVGLDKDASKIWNDYIQFIRLAPGVVGGSAWQ 316
Query: 153 ESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 212
+ Q+M +RKAYQRAV P +V LW++Y+ FE ++ + L+E Y +A++
Sbjct: 317 DQQKMDQLRKAYQRAVCIPLSNVNTLWREYDQFEKGLNPTTGRKYLNERSPAYMTAKSAN 376
Query: 213 RERKKYCEEIDWNMLA-VPPTGSYKEE----QQWIAWKRLLTFEKGNPQRIDTASSN--- 264
+ + L +PP ++ + +Q WKR + +EK +P + T
Sbjct: 377 TALENIMRNLVRTTLPRLPPAPGFEGDVEFAEQVDLWKRWVKWEKEDPLDLATDDPELFK 436
Query: 265 KRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI----DAAIKVFQRALKALPDSEMLRY 320
KRI++ Y+Q +M L P+IW D A W ++ + DA ++ ++A P+S +L
Sbjct: 437 KRILYAYKQAIMALRFCPEIWVDAAEWCFENSILVNGKDAGLEFLTEGIEANPESVLLAL 496
Query: 321 AFAELEES 328
A+ E+
Sbjct: 497 KHADRIET 504
Score = 166 (63.5 bits), Expect = 6.7e-44, Sum P(2) = 6.7e-44
Identities = 51/174 (29%), Positives = 83/174 (47%)
Query: 323 AELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEG-------VEAARKYFL 375
+ELEE I+A +K + + T + I R +RR +G + R+ F
Sbjct: 575 SELEEK---ISALEKGFGAQTDLLARTVSFVWIALARAMRRIQGKGQPGSPMGGMRQVFS 631
Query: 376 DARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLND 435
+ARK T VYVA A + + KDP +F+ G K F + ++LEY +L D
Sbjct: 632 EARKRGRLTSDVYVAIAQLEWTVYKDPS-GGKIFDRGSKLFPEDEIFMLEYLKYLHSRED 690
Query: 436 DRNIRALFERALSSLP--P---EESIEVWKRFTQFEQMYGDLDSTLKVEQRRKE 484
N R +FE ++ L P ++ ++ F ++E +G+L T K+E+R E
Sbjct: 691 TTNARVVFETCVNKLTQNPATVHKAKPLYSYFHKYESKFGELSQTAKLEKRMAE 744
Score = 59 (25.8 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 30/158 (18%), Positives = 61/158 (38%)
Query: 59 WKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKA 117
W + AY NN + + +F R L + +W Y ++ + E + K+
Sbjct: 184 WLSLIAAYRQRNNIEQCRDVFERFLAVFPHAAEVWVQYADM--ELSQGNFVEAEAIFGKS 241
Query: 118 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV--VTPTHHV 175
++S + + +W Y+ +++ LN R + + +AY + V
Sbjct: 242 ---LMS-----VPNVQLWTVYLDYIRRRNDLNDSSGRARQV-VTQAYDFVIDNVGLDKDA 292
Query: 176 EQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYR 213
++W DY F ++ + G + Q K R Y+
Sbjct: 293 SKIWNDYIQFIR-LAPGVVGGSAWQDQQKMDQLRKAYQ 329
Score = 55 (24.4 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 303 KVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAH 354
K+F R K P+ E+ + + SR A+ ++E+ + A H
Sbjct: 662 KIFDRGSKLFPEDEIFMLEYLKYLHSREDTTNARVVFETCVNKLTQNPATVH 713
>POMBASE|SPAC6F12.17 [details] [associations]
symbol:rna14 "mRNA cleavage and polyadenylation
specificity factor complex subunit Rna14 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPAC6F12.17
GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006378
Gene3D:1.25.40.10 GO:GO:0005847 GO:GO:0006379 eggNOG:COG5107
KO:K14408 OrthoDB:EOG49S9G9 PIR:T11668 RefSeq:NP_593303.1
ProteinModelPortal:O14233 STRING:O14233 EnsemblFungi:SPAC6F12.17.1
GeneID:2541600 KEGG:spo:SPAC6F12.17 OMA:YTKWENE NextBio:20802694
Uniprot:O14233
Length = 733
Score = 480 (174.0 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 99/302 (32%), Positives = 167/302 (55%)
Query: 45 YEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYE 104
YEQ+L FP + W Y+ + +A N+ A + LFSRCL+ L V LW Y+ +IR++
Sbjct: 94 YEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVDLWTLYLSYIRRI-N 152
Query: 105 KKGTEGQEETR--KAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRK 162
G EGQ + +A++F+++ +G DI SGPIW E++ FL+S PA + E+ Q++ +R+
Sbjct: 153 PDG-EGQSRSTITQAYEFVINTIGVDILSGPIWSEFVDFLRSGPANSTWEQQQKLDHVRR 211
Query: 163 AYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEI 222
YQRA+ TP H++E+LW+DY+ FENSV+R A+ ++E Y +ARA RE E +
Sbjct: 212 IYQRAITTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEGL 271
Query: 223 DWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASS-NKRIIFTYEQCLMYLYHY 281
+ E + W + +E+ +P + + RI + +EQ ++Y+
Sbjct: 272 RVYDFTFERKYTKVERIAYSRWMNWIKWEQSDPLDLQHGTMLQNRIAYAFEQAMLYVPLC 331
Query: 282 PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYES 341
P IW D ++ A++ +R ++ P + +L +AE EE+ + + YES
Sbjct: 332 PQIWLDGFSYFLSISDEQRALQTIRRGMRYCPSNFVLHVRYAEHEEANNRTSEIRSTYES 391
Query: 342 LL 343
L+
Sbjct: 392 LI 393
Score = 277 (102.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 65/193 (33%), Positives = 107/193 (55%)
Query: 292 NAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDS---VN 348
N ++ I + + AL A S++ A + E S KKL E L+ V
Sbjct: 379 NNRTSEIRSTYESLIAAL-AREISQLDSKASSSSESSTDGNPQEKKLPEHLVKRKSRLVR 437
Query: 349 TTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNV 408
+LA I +RRTEGV+AAR F ARK+P ++ +Y+A A+M +DP +A +
Sbjct: 438 QYSLAWCCLINAIRRTEGVKAARAIFTKARKAPYQSHEIYIASAMMEHHCSRDPVIASRI 497
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468
FE G++ F PAY+ +Y +L +ND+ N RALFE+A+ + +E+ +++++ +E
Sbjct: 498 FELGMRHFGDVPAYVYKYLSYLIAINDETNARALFEKAIPRIAADEAKPIYQKWLDYESN 557
Query: 469 YGDLDSTLKVEQR 481
YGDL++ + + QR
Sbjct: 558 YGDLNAAIALSQR 570
Score = 57 (25.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 270 TYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRAL 309
TYEQ L + P +W DY + A +F R L
Sbjct: 93 TYEQMLRPFPYVPRVWVDYISSELAFNDFHAVELLFSRCL 132
>SGD|S000004665 [details] [associations]
symbol:RNA14 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005849
"mRNA cleavage factor complex" evidence=IPI] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 SGD:S000004665 UniProt:P25298
GO:GO:0005739 GO:GO:0006378 EMBL:BK006946 Gene3D:1.25.40.10
EMBL:Z49703 GO:GO:0006379 GO:GO:0005849 eggNOG:COG5107 KO:K14408
GeneTree:ENSGT00390000006758 OrthoDB:EOG49S9G9 OMA:YTKWENE
EMBL:M73461 PIR:S54561 RefSeq:NP_013777.1 PDB:2L9B PDBsum:2L9B
ProteinModelPortal:P25298 SMR:P25298 DIP:DIP-1488N IntAct:P25298
MINT:MINT-400599 STRING:P25298 PaxDb:P25298 PRIDE:P25298
EnsemblFungi:YMR061W GeneID:855083 KEGG:sce:YMR061W CYGD:YMR061w
HOGENOM:HOG000000753 NextBio:978372 Genevestigator:P25298
GermOnline:YMR061W
Length = 677
Score = 282 (104.3 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 74/305 (24%), Positives = 142/305 (46%)
Query: 39 AQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ---VPLWRCY 95
A+ +YEQ + FP + W ++ +A + + +++ ++CL L+ + LW Y
Sbjct: 59 AKVREVYEQFHNTFPFYSPAWTLQLKGELARDEFETVEKILAQCLSGKLENNDLSLWSTY 118
Query: 96 IRFIRKVYE--KKGTEGQEETRKAFDFMLSHVGS-DISSGPIWLEYITFLKSLPALNAQE 152
+ +IR+ G E + KAF ++ + S W EY+ FL+ N E
Sbjct: 119 LDYIRRKNNLITGGQEARAVIVKAFQLVMQKCAIFEPKSSSFWNEYLNFLEQWKPFNKWE 178
Query: 153 ESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVY 212
E QR+ +R+ Y++ + P ++E++W Y +E ++ A+ + E ++Y AR++Y
Sbjct: 179 EQQRIDMLREFYKKMLCVPFDNLEKMWNRYTQWEQEINSLTARKFIGELSAEYMKARSLY 238
Query: 213 RE------RKKYCEEIDW---NMLAVPPTGSYKEE-QQWIAWKRLLTFEKGNPQRIDTAS 262
+E K I+ N +P G+ QQ W + +E+ N +
Sbjct: 239 QEWLNVTNGLKRASPINLRTANKKNIPQPGTSDSNIQQLQIWLNWIKWERENKLMLSEDM 298
Query: 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF 322
++RI + Y+Q + Y+ ++WYDY+ + +++ + AL A PDS L +
Sbjct: 299 LSQRISYVYKQGIQYMIFSAEMWYDYSMYISENSDRQ---NILYTALLANPDSPSLTFKL 355
Query: 323 AELEE 327
+E E
Sbjct: 356 SECYE 360
Score = 190 (71.9 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 43/127 (33%), Positives = 68/127 (53%)
Query: 357 FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNVFEAGLKR 415
++ ++R G+ AAR F RK T+ VYV A + F D K A V E GLK
Sbjct: 419 YMNTMKRISGLSAARTVFGKCRKLKRILTHDVYVENAYLEFQNQNDYKTAFKVLELGLKY 478
Query: 416 FMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESI-EVWKRFTQFEQMYGDLDS 474
F ++ YI +Y DFL LN D I+ LFE ++ + + E++K+ +E +G+L++
Sbjct: 479 FQNDGVYINKYLDFLIFLNKDSQIKTLFETSVEKVQDLTQLKEIYKKMISYESKFGNLNN 538
Query: 475 TLKVEQR 481
+E+R
Sbjct: 539 VYSLEKR 545
Score = 40 (19.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 387 VYV-AYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILE-YADFLS---RLNDDRNIRA 441
VY+ Y +KD ++ +FE +++ + + + E Y +S + + N+ +
Sbjct: 484 VYINKYLDFLIFLNKDSQIK-TLFETSVEK-VQDLTQLKEIYKKMISYESKFGNLNNVYS 541
Query: 442 LFERALSSLPPEESIEVW-KRFT-QFEQMYGDLDSTLKVEQRRKEALSRTGEEG 493
L +R P E IEV+ R+ Q + L+ T + S +G
Sbjct: 542 LEKRFFERFPQENLIEVFTSRYQIQNSNLIKKLELTYMYNEEEDSYFSSGNGDG 595
>CGD|CAL0005466 [details] [associations]
symbol:orf19.1531 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
CGD:CAL0005466 GO:GO:0005634 GO:GO:0005737 GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AACQ01000008 EMBL:AACQ01000007
eggNOG:COG5107 KO:K14408 RefSeq:XP_722436.1 RefSeq:XP_722575.1
ProteinModelPortal:Q5AM44 STRING:Q5AM44 GeneID:3635749
GeneID:3635890 KEGG:cal:CaO19.1531 KEGG:cal:CaO19.9106
Uniprot:Q5AM44
Length = 791
Score = 329 (120.9 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 89/316 (28%), Positives = 160/316 (50%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIRFI 99
Q +++ L +F W +Y++ + + + + LF +CL I V L R Y+ ++
Sbjct: 48 QVRNTFDKYLKIFKFDGASWCKYIKYELNRDEKEKVENLFQQCLGITDNVELCRLYVDYV 107
Query: 100 RKV--YEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSL-PALNAQEESQR 156
R V + G + + +AF+F ++ VG DI+S +W +YI FL+S P N E+ Q+
Sbjct: 108 RGVTDFVTGGEKARGVVVQAFEFAINKVGIDITSESLWQDYIQFLQSWNPNAN-WEQQQK 166
Query: 157 MIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERK 216
+ IRK Y++ + PT ++E W Y +EN ++ A +SE ++ AR+ E
Sbjct: 167 IDLIRKVYKKFLTIPTENIEVSWSQYTKWENELNPATASKFISEKSGEFMLARSWNTEFN 226
Query: 217 KYCEE-IDWNMLAVPPTGSYKEE---QQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTY 271
+ ++ + N+ P G + +E +Q W R L EK N + D ++KRI + Y
Sbjct: 227 RITDKSLKRNL---NP-GDHNDEDVVKQLKYWLRWLELEKENKLELKDETVNDKRIQYVY 282
Query: 272 EQCLMYLYHYPDIWYDYATW---NAKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEE 327
+Q L P+IW+ Y + + G++ +I++ + AL P S +L + AEL E
Sbjct: 283 KQATYALPFVPEIWFQYVKYLLVQNEEGNLQESIRLLKEGGLALNPKSMLLTFQLAELYE 342
Query: 328 SRGAIAAAKKLYESLL 343
+ AK ++++LL
Sbjct: 343 RDNSFNNAKIVFKNLL 358
Score = 132 (51.5 bits), Expect = 4.1e-35, Sum P(2) = 4.1e-35
Identities = 33/127 (25%), Positives = 65/127 (51%)
Query: 329 RGAIAAAKKL--YESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYH 386
R ++A +K+L +E+ + L +++ + +R+EG++ AR F ARK + Y
Sbjct: 458 RISLADSKQLLSFENEQKRLSDAITLTYVKSMIASKRSEGIKEARNVFKQARKFTDIGYQ 517
Query: 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 446
+++ AL+ DK A +F+ G K F ++L Y D+L +ND +R + + +
Sbjct: 518 IFIESALLEHYSDKK-STALKIFDLGKKNFATNGKFLLNYLDYLIMINDVDTMRTVIQSS 576
Query: 447 LSSLPPE 453
++ E
Sbjct: 577 DANFTKE 583
Score = 62 (26.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 36/172 (20%), Positives = 71/172 (41%)
Query: 46 EQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRKVYE 104
E+ L + P W++ ++ + +N + + F + L I W YI+ YE
Sbjct: 20 EEDLELNPLDYNKWQKLIDQLIIKDNQEQVRNTFDKYLKIFKFDGASWCKYIK-----YE 74
Query: 105 KKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI--AIRK 162
E +E+ F L + ++ ++++Y+ + + E+++ ++ A
Sbjct: 75 LNRDE-KEKVENLFQQCLG-ITDNVELCRLYVDYVRGVTDF--VTGGEKARGVVVQAFEF 130
Query: 163 AYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRE 214
A + + T E LW+DY F S + A E Q K R VY++
Sbjct: 131 AINKVGIDITS--ESLWQDYIQFLQSWNPN-ANW---EQQQKIDLIRKVYKK 176
>ASPGD|ASPL0000073973 [details] [associations]
symbol:AN4892 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0005634 GO:GO:0005737
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:BN001303 EMBL:AACD01000084
eggNOG:COG5107 KO:K14408 RefSeq:XP_662496.1 GeneID:2872687
KEGG:ani:AN4892.2 HOGENOM:HOG000197404 OMA:QDQQKMD
OrthoDB:EOG49S9G9 Uniprot:Q5B3I8
Length = 1075
Score = 400 (145.9 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 91/302 (30%), Positives = 155/302 (51%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A +YE+ L VFP +A+ W Y +N +Q+F+R LL V LW Y+
Sbjct: 272 IDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQIFNRTLLTIPAVQLWTVYLD 331
Query: 98 FIRKVYEKKGTEGQEETRK----AFDFMLSHVGSDISSGPIWLEYITFLKSLPAL---NA 150
++R+ T+ + RK A++ L H+G D SG IW +YI F++S P +
Sbjct: 332 YVRR-RNPLSTDTTGQARKVISSAYELALQHIGMDKESGSIWADYIQFIRSGPGNVGGSG 390
Query: 151 QEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARA 210
++ Q+M +RKAYQRA+ P V LWK+Y+ FE +++ + L E Y +AR+
Sbjct: 391 WQDQQKMDLLRKAYQRAICVPMQAVNTLWKEYDQFEMGLNKLTGRKFLQEQSPSYMTARS 450
Query: 211 VYRERKKYCEEIDWNMLA-VPPT----GSYKEEQQWIAWKRLLTFEKGNP---QRIDTAS 262
Y E + + +++ L +PP G ++ QQ WKR + +EKG+P + D +
Sbjct: 451 SYTELQNFTRDLNRTTLPRLPPVPGSEGDFEYLQQIEIWKRWINWEKGDPLVLKEDDLTA 510
Query: 263 SNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAF 322
R+++ Y+Q LM L P+IW++ A + + + + + A P+S +L +
Sbjct: 511 YKGRVVYVYKQALMALRFLPEIWFEAADFCFLNDMETEGNEFLKNGIDANPESCLLAFKR 570
Query: 323 AE 324
A+
Sbjct: 571 AD 572
Score = 185 (70.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 71/257 (27%), Positives = 115/257 (44%)
Query: 242 IAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-GSIDA 300
+A+KR E + D ++ Y++ L LY D+ T A+ ++
Sbjct: 566 LAFKRADRLEITSESEQDPIKRGAKVREPYDRLLDALY---DLIAKARTREAQDVARLEE 622
Query: 301 AIKVFQRALKALPDSEMLRYAFAELEES-RGA-IAAAKKLYESLLTDSVNTTALAHIQFI 358
K+ A D + + + +ES + A I A + + + T + A I +
Sbjct: 623 TFKLRPDTQPAANDDDDDDQSETKAKESVKNAQIEAVRHAHSIQIGILSKTVSFAWIALM 682
Query: 359 RFLRRTEG------VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAG 412
R +RR +G V +R+ F DARK T VY+A AL+ + KDP A +FE G
Sbjct: 683 RAMRRIQGKGKPGEVPGSRQVFADARKRGRITSDVYIASALIEYHCYKDPA-ATKIFERG 741
Query: 413 LKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLP--PE---ESIEVWKRFTQFEQ 467
K F + + LEY L +ND N RA+FE + L PE ++ ++ ++E
Sbjct: 742 AKLFPEDENFALEYLKHLIDINDIINARAVFEMTVRKLAANPENVHKTKPIFAFLHEYES 801
Query: 468 MYGDLDSTLKVEQRRKE 484
YGDL + +E R +E
Sbjct: 802 RYGDLVQVINLETRMRE 818
Score = 61 (26.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 26/133 (19%), Positives = 51/133 (38%)
Query: 59 WKQYVEAYMAVNNDDATKQLFSRCLLIC-LQVPLWRCYIRFIRKVYEKKGTEGQEETRKA 117
W + + + + N D+ + ++ R L + L +W Y ++ E E +
Sbjct: 259 WLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLE------QI 312
Query: 118 FDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV--VTPTHHV 175
F+ L I + +W Y+ +++ L+ Q I AY+ A+ +
Sbjct: 313 FNRTLL----TIPAVQLWTVYLDYVRRRNPLSTDTTGQARKVISSAYELALQHIGMDKES 368
Query: 176 EQLWKDYENFENS 188
+W DY F S
Sbjct: 369 GSIWADYIQFIRS 381
Score = 40 (19.1 bits), Expect = 6.5e-33, Sum P(2) = 6.5e-33
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 719 DDDETTTVQSQPQPRDFFRIRQMKKARGAASSQTGSAS 756
DDD+ QS+ + ++ + Q++ R A S Q G S
Sbjct: 636 DDDDDD--QSETKAKESVKNAQIEAVRHAHSIQIGILS 671
>UNIPROTKB|E9PLP8 [details] [associations]
symbol:CSTF3 "Cleavage stimulation factor subunit 3"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 EMBL:AC131263 HGNC:HGNC:2485
IPI:IPI00982702 ProteinModelPortal:E9PLP8 SMR:E9PLP8
Ensembl:ENST00000524827 ArrayExpress:E9PLP8 Bgee:E9PLP8
Uniprot:E9PLP8
Length = 185
Score = 257 (95.5 bits), Expect = 4.8e-21, P = 4.8e-21
Identities = 46/125 (36%), Positives = 79/125 (63%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 62 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 121
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYIT 140
RCL+ L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI
Sbjct: 122 RCLMKVLHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYIN 180
Query: 141 FLKSL 145
FLK +
Sbjct: 181 FLKGV 185
>UNIPROTKB|I3LMS1 [details] [associations]
symbol:I3LMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00390000006758
EMBL:FP565602 Ensembl:ENSSSCT00000031850 Uniprot:I3LMS1
Length = 118
Score = 232 (86.7 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 40/100 (40%), Positives = 66/100 (66%)
Query: 87 LQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLP 146
L + LW+CY+ ++R+ K + +E+ +A+DF L +G +I S IW++YI FLK +
Sbjct: 4 LHIDLWKCYLSYVRETKGKLPSY-KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE 62
Query: 147 ALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE 186
A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E
Sbjct: 63 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYE 102
>UNIPROTKB|Q86UA1 [details] [associations]
symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
"Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
Length = 669
Score = 163 (62.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 71/280 (25%), Positives = 126/280 (45%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 349 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 400
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M+ +A EE +G I A+ + ++ + V A+ +
Sbjct: 401 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTF-EECVLGLAMVRL 459
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A DA KS N + V A F K+ PK + EA
Sbjct: 460 RRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEA 519
Query: 412 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 466
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 520 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAVHGSLPIKMRITFSQRKVEFL 577
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
+ +G D++ L + +++L R E G+ E+
Sbjct: 578 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 617
Score = 127 (49.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 44/167 (26%), Positives = 76/167 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 110 HLMAARKA--FDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWI 167
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ + E R F+ + G+D S +W YI + N Q
Sbjct: 168 HYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWE------NEQGN 221
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 196
+ + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 222 LREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 262
Score = 43 (20.2 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 152 EESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFE 186
E+ ++A RKA+ R + + WK Y + E
Sbjct: 106 EQENHLMAARKAFDRFFIHYPY-CYGYWKKYADLE 139
>UNIPROTKB|F1PV57 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
Uniprot:F1PV57
Length = 667
Score = 162 (62.1 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 70/280 (25%), Positives = 125/280 (44%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 347 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 398
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 399 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 457
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 458 RRVSLERRHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 517
Query: 412 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 466
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 518 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 575
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
+ +G D++ L + +++L R E G+ E+
Sbjct: 576 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 615
Score = 127 (49.8 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 44/167 (26%), Positives = 76/167 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 108 HLMAARKA--FDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWI 165
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ + E R F+ + G+D S +W YI + N Q
Sbjct: 166 HYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDRLWEMYINWE------NEQGN 219
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 196
+ + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 220 LREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
Score = 39 (18.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 9 ESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWK 60
E E++ G + N T E +A+ LPV + + P KFWK
Sbjct: 40 EMEQSPDG-SPNVNATTEENEIANAVDLPVTETEANFP------PEYEKFWK 84
>UNIPROTKB|E1C8G8 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
Uniprot:E1C8G8
Length = 628
Score = 146 (56.5 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 43/170 (25%), Positives = 77/170 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HLP A+ A +++ + +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 70 HLPAARKA--FDKFFTHYPYCYGYWKKYADLERRHDNIKQSDEVYRRGLQAIPLSVDLWI 127
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F++ + E R A++ + G+D S +W YI N ++E
Sbjct: 128 HYINFLKDTLDPDDPEANSTIRGAYEHAVLAAGTDFRSDRLWEMYI---------NWEDE 178
Query: 154 SQRMIAIRKAYQRAVVTPTHHVEQLWKD-YENFENSVSRQLAKGLLSEYQ 202
+ + Y R + PT QL+ ++ F++ V L + LL+ Q
Sbjct: 179 QGNLREVTSIYDRILGIPT----QLYSHHFQRFKDHVQNNLPRDLLTSEQ 224
Score = 142 (55.0 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 62/275 (22%), Positives = 124/275 (45%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y D W YA + ++
Sbjct: 309 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEDFWIKYAKY-MENH 360
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ V+ RA LP M+ +A EE +G I A+++ ++ + + A+ +
Sbjct: 361 SIEGVRHVYSRACTIHLPKKPMVHMLWAAFEEQQGNIDEARRILKTF-EECILGLAMVRL 419
Query: 356 QFIRFLRRTEGVEAARKYFLDA-RKSPNFTYHVYVAYALMA--FCQDKDPKLAHNVFEAG 412
+ + RR +E A + +A R + + + + A L F K+ A V
Sbjct: 420 RRVSLERRHGNMEEAERLLEEAVRNAKSVSESSFYAIKLARHLFKVQKNLPKARKVLSDA 479
Query: 413 LKRFMHEPA-YI----LEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVWKRFTQFE 466
++ Y+ +EY L++ ++ NI + F++A++ SL + + +R +F
Sbjct: 480 IEIDKENTKLYLNLLEMEYCGDLTQ--NEENILSCFDKAVNGSLSIKMRVTFSQRKVEFL 537
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGA 494
+ +G D++ L + ++ L R E G+
Sbjct: 538 EDFGSDVNKLLDAYDEHQALLKEQDTLKRRAENGS 572
Score = 42 (19.8 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 732 PRDFFRIRQMKKARGAASSQTGSASYGSAVSGD 764
PRD Q + R +S G A G A +GD
Sbjct: 216 PRDLLTSEQFIQLRRELASVNGHAG-GDASAGD 247
>RGD|1308702 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
Length = 664
Score = 158 (60.7 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 71/280 (25%), Positives = 123/280 (43%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 346 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 397
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M +A EE +G I A+ + + + V A+ +
Sbjct: 398 SIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRL 456
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 457 RRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 516
Query: 412 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 466
K + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 517 IEKDKENTKLYLNLLEMEYSCDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 574
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
+ +G D++ L + ++ L R E G+ E+
Sbjct: 575 EDFGSDVNKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEE 614
Score = 129 (50.5 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 42/167 (25%), Positives = 74/167 (44%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 107 HLMAARKA--FDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWI 164
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ + E R F+ + G+D S +W YI N + E
Sbjct: 165 HYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSDKLWEMYI---------NWENE 215
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 196
+ + Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 216 QGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 259
>MGI|MGI:104602 [details] [associations]
symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog
(yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 MGI:MGI:104602 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
HOGENOM:HOG000010277 HOVERGEN:HBG082194 OrthoDB:EOG49GKG9
EMBL:AK017379 EMBL:AK154170 EMBL:AK168462 EMBL:BC029153
IPI:IPI00170040 IPI:IPI00761305 UniGene:Mm.283339
ProteinModelPortal:Q8K2Z2 SMR:Q8K2Z2 STRING:Q8K2Z2
PhosphoSite:Q8K2Z2 PaxDb:Q8K2Z2 PRIDE:Q8K2Z2 UCSC:uc007nqw.1
UCSC:uc007nra.1 InParanoid:Q8K2Z2 ChiTaRS:PRPF39
Genevestigator:Q8K2Z2 GermOnline:ENSMUSG00000035597 Uniprot:Q8K2Z2
Length = 665
Score = 155 (59.6 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 69/273 (25%), Positives = 120/273 (43%)
Query: 244 WKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK 303
WK L FE N +++R++ +E+C++ Y + W YA + ++ SI+
Sbjct: 354 WKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENHSIEGVRH 405
Query: 304 VFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
VF RA LP M +A EE +G I A+ + + + V A+ ++ + R
Sbjct: 406 VFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRLRRVSLER 464
Query: 363 RTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEAGLKRFMH 418
R +E A DA KS N + + A F K+ PK + EA K +
Sbjct: 465 RHGNMEEAEHLLQDAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIEKDKEN 524
Query: 419 EPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFEQMYG-DL 472
Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F + +G D+
Sbjct: 525 TKLYLNLLEMEYSCDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDV 582
Query: 473 DSTLKVEQ------RRKEALSRTGEEGASALED 499
+ L + ++ L R E G+ E+
Sbjct: 583 NKLLNAYDEHQTLLKEQDTLKRKAENGSEEPEE 615
Score = 131 (51.2 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 43/167 (25%), Positives = 74/167 (44%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 108 HLMAARKA--FDKFFVHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWI 165
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ E E R F+ + G+D S +W YI N + E
Sbjct: 166 HYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYI---------NWENE 216
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 196
+ + Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 217 QGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
>UNIPROTKB|F1SI15 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
Length = 667
Score = 162 (62.1 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 69/280 (24%), Positives = 126/280 (45%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 348 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 399
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 400 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 458
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A + DA K+ N + + A F K+ PK + EA
Sbjct: 459 RRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 518
Query: 412 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 466
+ + Y+ +EY+ L + ++ NI F++A+ SLP + I +R +F
Sbjct: 519 IERDKENTKLYLNLLEMEYSGDLKQ--NEENILNCFDKAIHGSLPIKMRITFSQRKVEFL 576
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
+ +G D++ L + +++L R E G+ E+
Sbjct: 577 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 616
Score = 123 (48.4 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 43/167 (25%), Positives = 76/167 (45%)
Query: 35 HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWR 93
HL A+ A +++ +P +WK+Y + +N + +++ R L I L V LW
Sbjct: 108 HLMAARKA--FDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWI 165
Query: 94 CYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEE 153
YI F+++ + E + F+ + G+D S +W YI + N Q
Sbjct: 166 HYINFLKETLDPGDPETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWE------NEQGN 219
Query: 154 SQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENSVSRQLAKG 196
+ + AI Y R + PT HH ++ +K E+ +N++ R L G
Sbjct: 220 LREVTAI---YDRILGIPTQLYSHHFQR-FK--EHVQNNLPRDLLTG 260
>UNIPROTKB|A8E4M9 [details] [associations]
symbol:PRPF39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
CTD:55015 GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9
eggNOG:NOG298273 EMBL:DAAA02052958 EMBL:BC149776 IPI:IPI00710325
RefSeq:NP_001103259.1 UniGene:Bt.27128 Ensembl:ENSBTAT00000003373
GeneID:505547 KEGG:bta:505547 InParanoid:A8E4M9 NextBio:20867193
Uniprot:A8E4M9
Length = 548
Score = 165 (63.1 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 71/280 (25%), Positives = 127/280 (45%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 228 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 279
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M+ +A EE +G I A+ + + + V A+ +
Sbjct: 280 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTF-EECVLGLAMVRL 338
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A + +A KS N + + A F K+ PK + EA
Sbjct: 339 RRVSLERRHGNMEEAERLLQEAIKNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 398
Query: 412 GLKRFMHEPAYI----LEYADFLSRLNDDRNIRALFERAL-SSLPPEESIEVWKRFTQFE 466
+ + Y+ +EY+ L + N+D NI F++A+ SLP + I +R +F
Sbjct: 399 IERDKENTKLYLNLLEMEYSGDLKQ-NED-NILNCFDKAIHGSLPIKMRITFSQRKVEFL 456
Query: 467 QMYG-DLDSTLKVEQ------RRKEALSRTGEEGASALED 499
+ +G D++ L + +++L R E G+ E+
Sbjct: 457 EDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEE 496
Score = 100 (40.3 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 36/128 (28%), Positives = 59/128 (46%)
Query: 74 ATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 132
+T+ ++ R L I L V LW YI F+++ + E R F+ + G+D S
Sbjct: 26 STQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTVRGTFEHAVLAAGTDFRSD 85
Query: 133 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENS 188
+W YI + N Q + + AI Y R + PT HH ++ +KD+ +N+
Sbjct: 86 RLWEMYINWE------NEQGNLREVTAI---YDRILGIPTQLYSHHFQR-FKDH--VQNN 133
Query: 189 VSRQLAKG 196
+ R L G
Sbjct: 134 LPRDLLTG 141
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 210 (79.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 99/437 (22%), Positives = 179/437 (40%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRFIRKV 102
+Y++ L+ FP +WK+Y + ++ +A ++ R + I V LW Y F
Sbjct: 62 VYDRFLAKFPLLFGYWKKYADLEFSITGTEAADMVYERGVASISSSVDLWTNYCTF---- 117
Query: 103 YEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLP------ALNAQEESQR 156
+ + + + R+ F+ + VG D S P W +YI + + + A+ A+
Sbjct: 118 -KAETSHDTDIIRELFERGANCVGLDFLSHPFWDKYIEYEERVEGYDKIFAILARVIEIP 176
Query: 157 MIAIRKAYQR----------AVVTPTHHVEQLWKDYE----------NFENSVSRQLAKG 196
M + ++R A + P + + Q D + + + R L
Sbjct: 177 MHQYARYFERYRQLAQTRPVAELAPPNVISQFRADLDAAAGIVAPGAKADAEIERDLRLR 236
Query: 197 LLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQ 256
L + ++ + +R Y EI V +E Q W++ L FE+
Sbjct: 237 LDGYHLEIFSKTQTETTKRWTYESEIKRPYFHVTEL----DEGQLANWRKYLDFEEAE-- 290
Query: 257 RIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW-NAKSGSIDAAIKVFQRALKA-LPD 314
S RI F YE+CL+ HY + W YA W +A+ G + ++QRA +P
Sbjct: 291 -----GSYARIQFLYERCLVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRASYLYVPI 345
Query: 315 SE-MLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 373
+ R +A EE G ++ AK+++E++L + N + RR G+EAA +
Sbjct: 346 ANPATRLQYAYFEEMCGRVSVAKEIHEAILINIPNHVETI-VSLANMCRRHGGLEAAIEV 404
Query: 374 F---LDARKSPNFTYHVYVA-YALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADF 429
+ LD+ + T VA +A + + + A VF+ + ++ A+ Y F
Sbjct: 405 YKSQLDSPQCEMSTKAALVAEWARLLWKIKGSTEEARQVFQKNQQYYLDSQAFWHSYLTF 464
Query: 430 -LSRLNDDRNIRALFER 445
L + A +ER
Sbjct: 465 ELDQPTSAATESAQYER 481
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 142 (55.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 35/111 (31%), Positives = 60/111 (54%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW-NAKS 295
+E Q + W++ L FE + +RI YE+CL+ Y + W+ YA W +A+
Sbjct: 278 DEAQLVNWRKYLDFE-------EVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQP 330
Query: 296 GSIDAAIKVFQRA--LKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLT 344
++ +++RA + A +R +A EES+G IA+AK +Y+S+LT
Sbjct: 331 DHLNDVSIIYERASCIFASISRPGIRVQYALFEESQGNIASAKAIYQSILT 381
Score = 109 (43.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 38/167 (22%), Positives = 71/167 (42%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRFIRKV 102
+Y++ L +P +WK+Y + V +A++ ++ R + I V LW Y F
Sbjct: 60 VYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNYCAF---- 115
Query: 103 YEKKGTEGQ-EETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIR 161
K T G E R+ F + VG D S P W +Y+ F +E +R +
Sbjct: 116 --KMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEF---------EERQERPDNVF 164
Query: 162 KAYQRAVVTPTHHVEQLWKDYENFENS--VSRQLAKGLLSEYQSKYT 206
+ +R + P H + ++ + S + + L +L+ ++ T
Sbjct: 165 QLLERLIHIPLHQYARYFERFVQVSQSQPIQQLLPPDVLASIRADVT 211
Score = 91 (37.1 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 57/280 (20%), Positives = 103/280 (36%)
Query: 244 WKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIK 303
W R + P ++ S II+ C+ P I YA + G+I +A
Sbjct: 319 WFRYARWMSAQPDHLNDVS----IIYERASCIFASISRPGIRVQYALFEESQGNIASAKA 374
Query: 304 VFQRALKALPDSEMLRYAFAELEESRGA---IAAAKKLYESLLTDSVNTTALAHI---QF 357
++Q L LP + + LE + A + S++ + T + + +
Sbjct: 375 IYQSILTQLPGNLEAVLGWVGLERRNAPNYDLTNAHAVLRSIINEGKCNTGITEVLITED 434
Query: 358 IRFLRRTEG-VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK--LAH-----NVF 409
I+ + + EG +E AR FL + H ++++ Q + K H NV
Sbjct: 435 IKLVWKIEGDIELARNMFLQNAPALLDCRHFWISFLRFELEQPLNSKNYTEHHARVSNVM 494
Query: 410 EAGLKRFMHEPAYILEYAD-FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468
E + P I++ ++ L N ++ + L +V+ F+ E
Sbjct: 495 EMIRNKTRLPPRTIMDLTKLYMEYLCHQSNDPSVLQEYLLI-----DRDVFGPFSVRESH 549
Query: 469 YGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRY 508
+ LD ++Q LS G G S E ++ S Y
Sbjct: 550 WKKLDEGQDLKQVSTRLLSTNGHPGISVNEAKIKSGESPY 589
Score = 37 (18.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 29 LANSALHLPVAQAAPIYEQLLSV 51
L +H+P+ Q A +E+ + V
Sbjct: 166 LLERLIHIPLHQYARYFERFVQV 188
>DICTYBASE|DDB_G0291836 [details] [associations]
symbol:DDB_G0291836 "Squamous cell carcinoma antigen
recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
Length = 949
Score = 178 (67.7 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 69/280 (24%), Positives = 118/280 (42%)
Query: 46 EQLLSVFPTAAKFWKQYV---EAYMAVNNDDA-TKQLFSRCLLICLQVPLWRCYIRFIRK 101
E+ S+ P + W + + YM +ND L+ + L + V + Y +FI K
Sbjct: 118 EKFQSIHPLSQDIWLAWFSDEQKYMKTDNDKQYILSLYEKALNDFISVKINVSYCKFIIK 177
Query: 102 VYEKKG--TEGQEETRKAFDFMLSHVGSDISSGPI-WLEYITFLKSLPA-LNAQEESQRM 157
+ G +E RK F+ L G DI P+ W EY F + L + + +E Q
Sbjct: 178 INTNSGGLINNVKEIRKQFERSLEQCGDDIIESPLLWSEYRMFEQMLLSQIKDDKEKQTQ 237
Query: 158 IAI-RKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERK 216
I I R Y R + P + ++ DY+ +E+S S + + + +E K
Sbjct: 238 IKIIRDLYHRQLSNPMIGLHSIYNDYQQWEHSQSIDNNNNNNNNQEKEKEEKEKEEKEIK 297
Query: 217 KYCEEIDWNMLAVPPTGSYKEEQQWI---AWKRLLTFEKGNPQRIDTASSNKRIIFTYEQ 273
E+ P +E++++ WK + FEK Q D R+ +E+
Sbjct: 298 LKFEKSLKQFKEREPFEIALKEKKYLDQRKWKEYIEFEK-QQQHNDKPM---RVATLFER 353
Query: 274 CLMYLYHYPDIWYDYATWNAKSGSI-DAAIKVFQRALKAL 312
L ++ IW Y T+ K + D +KVF R+L+++
Sbjct: 354 QLKSFSNHFSIWSFYLTYLEKFTNFKDLHLKVFSRSLRSI 393
Score = 73 (30.8 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 425 EYADFLSRLNDDRNIRALFERALSSLPPEE-SIEVWKRFTQFEQMYGDLDSTLKVEQRRK 483
+Y F +++R LF++A S + ++ S +W+ + FE+ YGD++ V R
Sbjct: 572 QYISFEMEQKQFQSVRELFKKASSHIRFDDPSSRIWQDWFTFERGYGDINQYRAVSDRYS 631
Query: 484 EALSRTGEEGASALEDSLQ 502
++ +E L+ Q
Sbjct: 632 IIQNKYNKEQERYLQQQQQ 650
>UNIPROTKB|G4MRU5 [details] [associations]
symbol:MGG_04558 "Pre-mRNA-processing factor 39"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003107 SMART:SM00386
GO:GO:0005622 GO:GO:0006396 EMBL:CM001231 KO:K13217
RefSeq:XP_003710923.1 ProteinModelPortal:G4MRU5
EnsemblFungi:MGG_04558T0 GeneID:2677921 KEGG:mgr:MGG_04558
Uniprot:G4MRU5
Length = 586
Score = 182 (69.1 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 84/367 (22%), Positives = 154/367 (41%)
Query: 2 ASSSVEPESEENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQ 61
A +P+S EN + + NS+ +A Y++ L FP +WK+
Sbjct: 22 AEVDADPDSFENWEKLVRACEALDGGLTRNSSPQA-LATLRDAYDRFLLKFPLLFGYWKK 80
Query: 62 YVEAYMAVNNDDATKQLFSR-CLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDF 120
Y + + ++ + ++ R C I V LW Y F + + T + R F+
Sbjct: 81 YADLEFTIAGPESAEMVYERGCASITNSVDLWTEYCSF-----KMETTHVPQLVRDLFER 135
Query: 121 MLSHVGSDISSGPIWLEYITFLKSLPAL-NAQEESQRMIAI-----RKAYQR-AVVTPTH 173
+ VG D + P W +Y+ + + A N + QR+I I + Y+R + + T
Sbjct: 136 GAACVGLDFMAHPFWNKYLEYEERQEAHENIFKILQRVIHIPMYQYARYYERFSTMVHTR 195
Query: 174 HVEQLWKD--YENFENSVSRQLAK-GLLS---EYQSKYT-SARAVYRER-KKYCEEID-- 223
++ + F+ + + A G+ E++ + A Y E K E+
Sbjct: 196 ALDDVVSAELQARFKTEIEAEAAAYGVTKTEPEFEQEMRRKVDAHYGEIFTKTQTEVTKR 255
Query: 224 WNMLAVPPTGSYK----EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLY 279
W A + E+++ W++ L FE+ + TA F YE+CL+
Sbjct: 256 WLYEAEIKRPYFHVTELEKKELSNWRKYLDFEEAEGSFVRTA-------FLYERCLVTCA 308
Query: 280 HYPDIWYDYATW-NAKSGSIDAAIKVFQRALKA-LPDSEM-LRYAFAELEESRGAIAAAK 336
Y + W+ YA W +A+ + ++ RA +P S +R FA EES G +A A+
Sbjct: 309 FYDEFWFRYARWMSAQPDKTEEVRNIYLRAATIFVPISRPGIRLQFAYFEESCGRVAMAR 368
Query: 337 KLYESLL 343
+++ ++L
Sbjct: 369 EVHNAIL 375
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 175 (66.7 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 63/238 (26%), Positives = 113/238 (47%)
Query: 279 YHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKL 338
Y +W YA + ++ S++ A V+ RA+K LP + Y + +EE G I A+K+
Sbjct: 103 YRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKI 162
Query: 339 YESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR----KYFLDARKSPNFTYHVYVAYALM 394
+E + S + A + FI+F R +E +R ++ L K+ +F + YA
Sbjct: 163 FERWMDWSPDQQAW--LCFIKFELRYNEIERSRSIYERFVLCHPKASSF-----IRYAKF 215
Query: 395 AFCQDKDPKLAHNVFEAGLKRF--MHEPAYIL--EYADFLSRLNDDRNIRALFERALSSL 450
++ LA V+E ++ + E A ++ +A+F + R L++ AL +
Sbjct: 216 EM-KNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHI 274
Query: 451 PPEESIEVWKRFTQFEQMYGDLDSTLK-VEQRRKEALSRTGEEGASALE-DSLQDVVS 506
P + +++K+F FE+ YG+ + + RRK L GE + L DS D +S
Sbjct: 275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRK--LQYEGEVRKNPLNYDSWFDYIS 330
Score = 128 (50.1 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 90/365 (24%), Positives = 158/365 (43%)
Query: 115 RKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHH 174
RK F+ + G+ +S +W+ Y + +S Q++ R R ++RA+ ++
Sbjct: 57 RKEFEDQIR--GAKTNS-QVWVRYADWEES------QKDHDRA---RSVWERALEDESYR 104
Query: 175 VEQLWKDYENFE-NSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTG 233
LW Y FE + S A+ + K + + + EEI N+ G
Sbjct: 105 NHTLWLKYAEFEMRNKSVNHARNVWDR-AVKILPRVDQFWYKYIHMEEILGNI-----DG 158
Query: 234 SYKEEQQWIAW----KRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYA 289
+ K ++W+ W + L F K R + ++ I YE+ ++ + + YA
Sbjct: 159 ARKIFERWMDWSPDQQAWLCFIKFE-LRYNEIERSRSI---YERFVL-CHPKASSFIRYA 213
Query: 290 TWNAKSGSIDAAIKVFQRALKALPD----SEMLRYAFAELEESRGAIAAAKKLYESLLTD 345
+ K+ + A V++RA++ L D +EM+ AFAE EE + A+ LY+ L
Sbjct: 214 KFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDH 273
Query: 346 SVNTTAL-AHIQFIRFLRR---TEGVEAA----RK--YFLDARKSPNFTYHVYVAY-ALM 394
A + +F+ F ++ EG++ A RK Y + RK+P Y + Y +L
Sbjct: 274 IPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNP-LNYDSWFDYISLE 332
Query: 395 AFCQDKD------PKLAHNVFEAGLKRFMHEPAYI-LEYADFLSRLNDD-RNIRALFERA 446
DKD + NV A KR+ Y+ ++YA F L +D RA++
Sbjct: 333 ETLGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAVYREC 392
Query: 447 LSSLP 451
L+ +P
Sbjct: 393 LNLIP 397
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 178 (67.7 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 54/205 (26%), Positives = 97/205 (47%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
+E+ L Y +W YA + K+ ++ A V+ R++ LP + L + +EE G
Sbjct: 101 WERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLG 160
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
+ A++++E + S + A + FI+F R +E AR Y P + ++
Sbjct: 161 NVTGARQIFERWMNWSPDQKAW--LCFIKFELRYNEIERARSIYERFVLCHPKVS--AFI 216
Query: 390 AYALMAFCQDKDPKLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERA 446
YA + KLA V+E + + + E A IL +A+F R + R +++ A
Sbjct: 217 RYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFA 276
Query: 447 LSSLPPEESIEVWKRFTQFEQMYGD 471
L + + E++K+F FE+ YGD
Sbjct: 277 LDHIRKGRAEELYKKFVAFEKQYGD 301
>UNIPROTKB|D4A0B1 [details] [associations]
symbol:D4A0B1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 IPI:IPI00951935
Ensembl:ENSRNOT00000065090 ArrayExpress:D4A0B1 Uniprot:D4A0B1
Length = 426
Score = 123 (48.4 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 48/180 (26%), Positives = 78/180 (43%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ Q WK L FE N +++R++ +E+C++ Y + W YA + ++
Sbjct: 228 EKAQLKNWKEYLEFEIEN-------GTHERVVVLFERCVISCALYEEFWIKYAKY-MENH 279
Query: 297 SIDAAIKVFQRALKA-LPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI 355
SI+ VF RA LP M +A EE +G I A+ + + + V A+ +
Sbjct: 280 SIEGVRHVFSRACTVHLPKKPMAHMLWAAFEEQQGNINEARIILRTF-EECVLGLAMVRL 338
Query: 356 QFIRFLRRTEGVEAARKYFLDA---RKSPNFTYHVYVAYALMAFCQDKD-PKLAHNVFEA 411
+ + RR +E A DA KS N + + A F K+ PK + EA
Sbjct: 339 RRVSLERRHGNMEEAEHLLQDAIRNAKSNNESSFYAIKLARHLFKIQKNLPKSRKVLLEA 398
Score = 99 (39.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 34/128 (26%), Positives = 57/128 (44%)
Query: 74 ATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG 132
+T+ ++ R L I L V LW YI F+++ + E R F+ + G+D S
Sbjct: 26 STQMVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNSTIRGTFEHAVLAAGTDFRSD 85
Query: 133 PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPT----HHVEQLWKDYENFENS 188
+W YI N + E + + Y R + PT HH ++ +K E+ +N+
Sbjct: 86 KLWEMYI---------NWENEQGNLREVTAVYDRILGIPTQLYSHHFQR-FK--EHVQNN 133
Query: 189 VSRQLAKG 196
+ R L G
Sbjct: 134 LPRDLLTG 141
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 177 (67.4 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 53/205 (25%), Positives = 98/205 (47%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
+E+ + Y +W YA + K+ +++A V+ RA+ LP + L Y + +EE G
Sbjct: 115 WERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILG 174
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
IA A++++E + S + + FI+F R +E AR Y P + Y+
Sbjct: 175 NIAGARQIFERWMDWSPDQQGW--LSFIKFELRYNEIERARTIYERFVLCHPKVS--AYI 230
Query: 390 AYALMAFCQDKDPKLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERA 446
YA + + +V+E ++ E A IL +A+F R + R +++ A
Sbjct: 231 RYAKFEM-KGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFA 289
Query: 447 LSSLPPEESIEVWKRFTQFEQMYGD 471
L +P + +++++F FE+ YGD
Sbjct: 290 LDHIPKGRAEDLYRKFVAFEKQYGD 314
Score = 129 (50.5 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 65/257 (25%), Positives = 110/257 (42%)
Query: 244 WKRLLTFEK--GNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAA 301
+++ + FEK G+ + I+ A KR F YE + D W+DY G+ D
Sbjct: 302 YRKFVAFEKQYGDKEGIEDAIVGKRR-FQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRI 360
Query: 302 IKVFQRALKALPDSEMLRY---------AFAELEESRGA-IAAAKKLYES---LLTDSVN 348
++++RA+ +P +E RY +A EE I + +Y L+ S
Sbjct: 361 REIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKF 420
Query: 349 TTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSP-NFTYHVYVAYALMAFCQDKDPKLAH 406
+ A + +F R + AR+ +A K+P + + Y+ L D+ KL
Sbjct: 421 SFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYE 480
Query: 407 NVFEAGLKRFMHEPAYIL-EYADFLSRLNDDRNIRALFERALSSLPPEESIEV-WKRFTQ 464
E + E Y +YA+ L + RA+FE A+S P + E+ WK +
Sbjct: 481 RYLE-----WSPENCYAWSKYAELERSLVETERARAIFELAISQ-PALDMPELLWKAYID 534
Query: 465 FEQMYGDLDSTLKVEQR 481
FE G+L+ T + +R
Sbjct: 535 FEISEGELERTRALYER 551
Score = 59 (25.8 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V A ++++ +++ P + W +Y+ + N +Q+F R + W +I+
Sbjct: 142 VNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIK 201
Query: 98 F 98
F
Sbjct: 202 F 202
Score = 53 (23.7 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 109 EGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAV 168
E Q++ +A + D + +WL+Y F + +++ + + R + RAV
Sbjct: 103 ESQKDYARARSVWERAIEGDYRNHTLWLKYAEF---------EMKNKFVNSARNVWDRAV 153
Query: 169 VTPTHHVEQLWKDYENFE 186
T V+QLW Y + E
Sbjct: 154 -TLLPRVDQLWYKYIHME 170
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 177 (67.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/211 (27%), Positives = 99/211 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 209 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 268
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK--YFLDARKSPNFTY-HV 387
IA A++++E + A H +I F R + V+ AR YFL+ SP H
Sbjct: 269 NIAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYYFLN---SPELVLVHP 323
Query: 388 YVA-YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIR 440
V + A ++K AH V+E ++ F M E Y+ +A F + +R
Sbjct: 324 DVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVR 382
Query: 441 ALFERALSSLPPEESIEVWKRFTQFEQMYGD 471
+++ AL + +E+ E++K +T FE+ +GD
Sbjct: 383 VIYKYALDRISKQEAQELFKNYTIFEKKFGD 413
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 118 (46.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 63/262 (24%), Positives = 113/262 (43%)
Query: 240 QWIAWKRLLTFE--KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKS-G 296
Q W L FE +G+ +R+ +I+F ++CL+ Y + W YA W K+
Sbjct: 383 QLFNWMSYLDFEIKEGHEERV-------KILF--DRCLIPCSLYEEFWIKYARWTWKTYK 433
Query: 297 SIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQ 356
S + +++ +A P S L + + EES A K+ ++ + L ++
Sbjct: 434 SKTKSREIYMKAKIHCPTSLNLALSESGFEESVENFDDAIKILDNF-REEYPGYVLLELR 492
Query: 357 FIRFLRRT---EGVEAARKYFL--------DARKSPNFTYHVYVAYALMAFCQD--KDPK 403
++ LRR EG A ++ + D++ SPN H + + L + Q +DPK
Sbjct: 493 YLGVLRRKSEKEGHGAPSEFVMNQYESLIRDSQSSPNL--HSFYSLKLARYHQKSRRDPK 550
Query: 404 LAHNVFEAGLKRFMHEPAYILEYAD--FLSRLNDDRNIRALFERAL-SSLPPEESIEVWK 460
LA V + + +Y D + S + ++ F+ AL S+L E+ + +
Sbjct: 551 LAQKVLKKAISIDPFNLQLYSQYVDIAYSSESMSELDVIQSFDVALDSNLRLEDKVRFSQ 610
Query: 461 RFTQFEQMYGDLDSTLKVEQRR 482
R F + G+ + L VE R
Sbjct: 611 RKLDFLEELGN--NILAVEDHR 630
Score = 108 (43.1 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 41/181 (22%), Positives = 76/181 (41%)
Query: 45 YEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYIRFIRKVY 103
Y LS +P FW++Y E + N K ++ + ++ I L + LW Y ++ +
Sbjct: 122 YRSFLSRYPNCYGFWQKYAEYEKKMGNIAEAKAVWEKGIISIPLSIDLWLGYTADVKNI- 180
Query: 104 EKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS--LPALNAQEESQRMIAIR 161
K E R + + G + S +WLE I F ++ + L + I
Sbjct: 181 --KNFP-PESLRDLYARAIEIAGLEYQSDRLWLEAIGFERAVYMDELCKGNTNASCKRIG 237
Query: 162 KAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEE 221
+ + + TPT H + Y + N++ L LLS+ + + + V ++ K EE
Sbjct: 238 VLFDKLLSTPTFHAPSHFDRYVQYLNTIEPHL---LLSDREYEEIM-KMVCKQLGKSIEE 293
Query: 222 I 222
+
Sbjct: 294 L 294
>FB|FBgn0039600 [details] [associations]
symbol:CG1646 species:7227 "Drosophila melanogaster"
[GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 InterPro:IPR001623 EMBL:AE014297 Gene3D:1.25.40.10
SMART:SM00271 GO:GO:0000398 GO:GO:0000381 eggNOG:COG5107
GO:GO:0005685 GeneTree:ENSGT00390000005033 KO:K13217 EMBL:AY051737
RefSeq:NP_001097957.1 RefSeq:NP_001097958.1 RefSeq:NP_651634.1
RefSeq:NP_733256.2 RefSeq:NP_788753.1 RefSeq:NP_788754.2
UniGene:Dm.31288 ProteinModelPortal:Q7KRW8 SMR:Q7KRW8 IntAct:Q7KRW8
MINT:MINT-820225 STRING:Q7KRW8 PaxDb:Q7KRW8 PRIDE:Q7KRW8
EnsemblMetazoa:FBtr0085322 GeneID:43399 KEGG:dme:Dmel_CG1646
UCSC:CG1646-RB FlyBase:FBgn0039600 InParanoid:Q7KRW8 OMA:IRWENES
OrthoDB:EOG4ZKH2F PhylomeDB:Q7KRW8 GenomeRNAi:43399 NextBio:833726
Bgee:Q7KRW8 Uniprot:Q7KRW8
Length = 1066
Score = 133 (51.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 61/270 (22%), Positives = 116/270 (42%)
Query: 237 EEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATW----N 292
E Q WK L FE R +R++ +E+CL+ Y + W +
Sbjct: 701 ERAQLKNWKDYLDFEIEKGDR-------ERVLVLFERCLIACALYDEFWLKMLRYLESLE 753
Query: 293 AKSGSIDAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTA 351
+SG +D V++RA + PD L +A EE + A ++ + + N
Sbjct: 754 DQSGVVDLVRDVYRRACRIHHPDKPSLHLMWAAFEECQMNFDDAAEILQRIDQRCPNLLQ 813
Query: 352 LAHIQFIRFLRRTEGVEAAR---KYFLDARKSPNFTYHVYVAYA--LMAFCQDKDPKLAH 406
L++ + I RR ++ R K+++++ K+ + + YA L C D D LA
Sbjct: 814 LSYRR-INVERRRGALDKCRELYKHYIESTKNKGIAGSLAIKYARFLNKICHDLDAGLA- 871
Query: 407 NVFEAGLKRFMHEPAYILEYADF-LSRLN-DDRNIRALFER--ALSSLPPEESIEVWKRF 462
+ L+R L+ D L R D++ + + ++ A + + P++ + +R
Sbjct: 872 -ALQQALERDPANTRVALQMIDLCLQRPKVDEQEVVEIMDKFMARADIEPDQKVLFAQRK 930
Query: 463 TQFEQMYGDLDSTLKVEQRR-KEALSRTGE 491
+F + +G L+ QR ++AL++ E
Sbjct: 931 VEFLEDFGSTARGLQDAQRALQQALTKAKE 960
Score = 94 (38.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 37/157 (23%), Positives = 67/157 (42%)
Query: 39 AQAA-PIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWRCYI 96
A+AA Y+ LS +P +W++Y + ++F R L I L V LW Y+
Sbjct: 395 AEAAREAYDTFLSHYPYCYGYWRKYADYEKRKGIKANCYKVFERGLEAIPLSVDLWIHYL 454
Query: 97 RFIRKVYEKKGTEGQEET--RKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEES 154
+ K G +ET R ++ + G + S +W YI + + ES
Sbjct: 455 MHV------KSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRW---------ENES 499
Query: 155 QRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSR 191
+R + + Y R + PT ++NF++ +++
Sbjct: 500 KRYHRVVQIYDRLLAIPTQGYNG---HFDNFQDLINQ 533
Score = 47 (21.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 158 IAIRKAYQRAVVTPTHHVEQL-------WKDYENFE 186
+ R +++ + P HV+ L WKDY +FE
Sbjct: 680 VTARWSFEEGIKRPYFHVKPLERAQLKNWKDYLDFE 715
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 168 (64.2 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 53/207 (25%), Positives = 96/207 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
+A A++++E + A H +I F R + VE AR + + + ++
Sbjct: 164 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVERARTIY-ERFVLVHPAVKNWIK 220
Query: 391 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 444
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 221 YARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 276
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD 471
AL + +E+ E++K +T FE+ +GD
Sbjct: 277 YALDRISKQEAQELFKNYTIFEKKFGD 303
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 168 (64.2 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 53/207 (25%), Positives = 96/207 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 104 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 163
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
+A A++++E + A H +I F R + VE AR + + + ++
Sbjct: 164 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVERARTIY-ERFVLVHPAVKNWIK 220
Query: 391 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 444
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 221 YARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 276
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD 471
AL + +E+ E++K +T FE+ +GD
Sbjct: 277 YALDRISKQEAQELFKNYTIFEKKFGD 303
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 168 (64.2 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 50/207 (24%), Positives = 96/207 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 120 YERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 179
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
+A +++++E + A H +I F R + V+ AR ++ + ++
Sbjct: 180 NVAGSRQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYIALLVIVHPDVKNWIK 237
Query: 391 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 444
YA ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 238 YARF---EEKHCYFAHARKVYERAVEFFGEEHMDEHLYVA-FAKFEENQKEFERVRVIYK 293
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD 471
AL +P +++ ++K +T FE+ +GD
Sbjct: 294 YALDRIPKQDAQNLFKNYTIFEKKFGD 320
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 166 (63.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 55/208 (26%), Positives = 96/208 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 145 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 204
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
IA A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 205 NIAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 260
Query: 390 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 443
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 261 KYARF---EEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 316
Query: 444 ERALSSLPPEESIEVWKRFTQFEQMYGD 471
+ AL + +E+ E++K +T FE+ +GD
Sbjct: 317 KYALDRISKQEAQELFKNYTIFEKKFGD 344
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 165 (63.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 188 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 247
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
IA A++++E + A H +I F R + V+ AR + S +
Sbjct: 248 NIAGARQVFERWMEWRPEEQAW-H-SYINFELRYKEVDRARTIYERYIHSLVLVHPDVKN 305
Query: 391 YALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 444
+ A ++K AH V+E ++ F M E Y+ +A F + +R +++
Sbjct: 306 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIYK 364
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD 471
AL + +E+ E++K +T FE+ +GD
Sbjct: 365 YALDRISKQEAQELFKNYTIFEKKFGD 391
Score = 126 (49.4 bits), Expect = 0.00033, P = 0.00033
Identities = 110/520 (21%), Positives = 199/520 (38%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
V A I+++ ++ P +FW +Y + N +Q+F R + + W YI
Sbjct: 215 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYIN 274
Query: 98 FIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRM 157
F + E E R +L H D+ + W++Y F EE
Sbjct: 275 FELRYKEVDRARTIYE-RYIHSLVLVH--PDVKN---WIKYARF----------EEKHGY 318
Query: 158 IA-IRKAYQRAV--VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTS---ARAV 211
A RK Y+RAV H E L+ + FE + ++ +Y S A+ +
Sbjct: 319 FAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQEL 378
Query: 212 YRE----RKKYCEEIDWNMLAVPPTG-SYKEE-----QQWIAWKRLLTFEKGNPQRIDTA 261
++ KK+ + + V Y+EE + AW L + + +
Sbjct: 379 FKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVR 438
Query: 262 SSNKRIIFTYE--QCLMYLYHYPDIWYDYATWNA-KSGSIDAAIKVFQRALKALPDSEM- 317
+R I Q + Y +W +YA + ++ + +V+Q +L+ +P +
Sbjct: 439 EVYERAIANVPPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFT 498
Query: 318 -----LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK 372
L YA E+ + + A + L S+ N +I+ LR + +
Sbjct: 499 FAKMWLLYAQFEIRQ-KNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYE 557
Query: 373 YFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL--EYADFL 430
FL+ N T ++ +A + D + A ++E + + + +L Y DF
Sbjct: 558 KFLEFGPE-NCTS--WIKFAELETILG-DIERARAIYELAISQPRLDMPEVLWKSYIDFE 613
Query: 431 SRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTG 490
+ R L+ R L + ++VW F QFE G S K Q +EA ++T
Sbjct: 614 IEQEETERTRNLYRRLLQRT---QHVKVWISFAQFELSSGKEGSLAKCRQIYEEA-NKT- 668
Query: 491 EEGASALEDSLQDVVSRYSFMDLW-PCSSKD-LDHLVRQE 528
E+ L + S +F D + S K+ +D L+ ++
Sbjct: 669 MRNCEEKEERLMLLESWRNFEDEFGTASDKERVDKLMPEK 708
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 163 (62.4 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 51/207 (24%), Positives = 97/207 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L + +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 103 YERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYMEEMLG 162
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
IA ++++E + A H +I F R + V+ AR + A + ++
Sbjct: 163 NIAGCRQVFERWMEWEPEEQAW-H-SYINFELRYKEVDKARSIYEKALVMVHPEVKNWIK 220
Query: 391 YALMAFCQDKDPKLAHN--VFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALFE 444
YA ++K +A VFE ++ F + E Y+ +A F + + +R +++
Sbjct: 221 YAHF---EEKHGYVARGRKVFERAVEFFGEEQVSENLYVA-FARFEEKQKEFERVRVIYK 276
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD 471
AL +P +++ E++K +T FE+ +GD
Sbjct: 277 YALDRIPKQQAQELFKNYTVFEKRFGD 303
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 158 (60.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 110/471 (23%), Positives = 186/471 (39%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVP-LWRCYIRF 98
+A I+E+ L V T+ W +Y+E+ M N + + L R + I +V LW Y
Sbjct: 90 RARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKY--- 146
Query: 99 IRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMI 158
VY ++ TR+ F+ +S + G W YI K E +R
Sbjct: 147 ---VYMEETLGNIPGTRQVFERWMSW---EPDEGA-WSAYIKLEKRY------NEFERAR 193
Query: 159 AIRKAYQRAVVTPTHHVEQLWKDYENFE-----NSVSRQ---LAKGLLSE--YQSKYTSA 208
AI +QR + H + W + FE + + R+ LA L E K A
Sbjct: 194 AI---FQRFTIV--HPEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIA 248
Query: 209 RAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEK--GNPQRIDTASSNKR 266
A + + K E + + K TFEK G+ + ++ KR
Sbjct: 249 YARFETKLKEYERA--RAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKR 306
Query: 267 IIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRY------ 320
+ EQ L +Y D+W+D+A +SG + V++RA+ +P S+ R+
Sbjct: 307 RVQYEEQLKENLRNY-DVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIY 365
Query: 321 --AFAELEESRGA--IAAAKKLYES---LLTDSVNTTALAHIQFIRFLRRTEGVEAARKY 373
F L E A I A+++Y L+ T A + +F R ++AARK
Sbjct: 366 LWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKT 425
Query: 374 FLDA-RKSP-NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLS 431
A P + + Y+ F + ++E ++ ++YA+
Sbjct: 426 LGQAIGMCPKDKLFRGYIDLERQLF----EFVRCRTLYEKQIEWNPSNSQSWIQYAELER 481
Query: 432 RLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQMYGDLDSTLKVEQR 481
L+D RA++E + P + E VWK + FE G+ + ++ +R
Sbjct: 482 GLDDTERARAIYELGIDQ-PTLDMPELVWKAYIDFEDDEGEYERERQLYER 531
Score = 52 (23.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 437 RNIRALFERALSSLPP----EESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
R RA+FERA EE +E+ + FE +G + K+E++
Sbjct: 572 RRARAVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDKIEKQ 620
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 163 (62.4 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 53/208 (25%), Positives = 96/208 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 253 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 312
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
+A A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 313 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 368
Query: 390 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 443
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 369 KYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 424
Query: 444 ERALSSLPPEESIEVWKRFTQFEQMYGD 471
+ AL + +++ E++K +T FE+ +GD
Sbjct: 425 KYALDRISKQDAQELFKNYTIFEKKFGD 452
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 163 (62.4 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 53/208 (25%), Positives = 96/208 (46%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
YE+ L Y +W YA K+ ++ A ++ RA+ LP Y + +EE G
Sbjct: 265 YERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 324
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
+A A++++E + A H +I F R + V+ AR Y P+ ++
Sbjct: 325 NVAGARQVFERWMEWQPEEQAW-H-SYINFELRYKEVDRARTIYERFVLVHPDVKN--WI 380
Query: 390 AYALMAFCQDKDPKLAH--NVFEAGLKRF----MHEPAYILEYADFLSRLNDDRNIRALF 443
YA ++K AH V+E ++ F M E Y+ +A F + +R ++
Sbjct: 381 KYARF---EEKHAYFAHARKVYERAVEFFGDEHMDEHLYVA-FAKFEENQKEFERVRVIY 436
Query: 444 ERALSSLPPEESIEVWKRFTQFEQMYGD 471
+ AL + +++ E++K +T FE+ +GD
Sbjct: 437 KYALDRISKQDAQELFKNYTIFEKKFGD 464
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 142 (55.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 69/283 (24%), Positives = 116/283 (40%)
Query: 238 EQQWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ + W L + + + T +S + + TYE+CLM L+ P IW Y K G
Sbjct: 72 ERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRG 131
Query: 297 SIDAAIKVFQRALKALPDSEMLRY--AFAELEESRGAIAAAKKLYESLLTDSVNTTALA- 353
I +VF RAL++LP ++ +R + S ++Y L +N A
Sbjct: 132 LITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYL--KMNPKARED 189
Query: 354 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413
+++++ + R + EAA++ + N + A+ L D K +F +
Sbjct: 190 YVEYL--IERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNV 247
Query: 414 KRFMHEPAYILEYAD---FLSRLNDDRNIR-ALFERALSSLPPEESIEVWKRFTQFEQMY 469
+ + Y Y D FL D IR A FERA EE+I F Q+Y
Sbjct: 248 DAIIRQGIY--RYTDQVGFLWCSLADYYIRSAEFERARDVY--EEAIAKVSTVRDFAQVY 303
Query: 470 GDLDSTLKVEQRRKEALSRTGEEGASALED-SLQDVVSRYSFM 511
D+ E+R + + E+ E+ L+ + RY +
Sbjct: 304 ---DAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHL 343
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 46/206 (22%), Positives = 91/206 (44%)
Query: 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 337
++ P +W YA + G++++ KV+ + ++ S + +A E A +
Sbjct: 484 VHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQ 543
Query: 338 LYES--LLTDSVNTTALAHIQFIRFLRRTEG--VEAARKYFLDARKSPNFTYHVYVAYAL 393
YE L + + ++F++R G +E AR F ++ T+ Y+ + L
Sbjct: 544 AYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYI-FLL 602
Query: 394 MAFCQDKDPKLAH--NVFE---AGLKRF-MHEPAYILEYADFLSRLNDDRNIRALFERAL 447
A +++ H +++ +G+ R MH I Y + + R +FERA+
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI--YIKKVQEMYGIAQCRPIFERAI 660
Query: 448 SSLPPEESIEVWKRFTQFEQMYGDLD 473
S LP ++S + R+ Q E G++D
Sbjct: 661 SELPEDKSRAMSLRYAQLETTVGEID 686
Score = 100 (40.3 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 38/117 (32%), Positives = 56/117 (47%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA--VNN---DDATKQL---FSRCLLICLQ 88
P Q IYE+ L+VF + K W Y++ + VN D++ + L + RCL+ +
Sbjct: 56 PAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHK 115
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS 144
+P +W CY +V K+G ETR+ FD L + IW YI FL S
Sbjct: 116 MPRIWICYC----EVMIKRGLI--TETRRVFDRALRSLPVT-QHMRIWTLYIGFLTS 165
Score = 74 (31.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 304 VFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361
+F+RA+ LP+ S + +A+LE + G I A+ +Y S H++F
Sbjct: 655 IFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEIS---DPKVHVKFWDTW 711
Query: 362 RRTE---GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK 403
+ E G EA + L R+S +Y+V V + D + K
Sbjct: 712 KNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLTSVQMRVDAERK 756
Score = 64 (27.6 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 28/128 (21%), Positives = 56/128 (43%)
Query: 367 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP-KLAHNVFEAGLKRFMHEPAYIL- 424
VE+ RK + + + + + YA+ F ++ + +LA +E G+ F + +
Sbjct: 504 VESCRKVYDKMIELRVASPQMIMNYAM--FLEENEYFELAFQAYEKGIALFKWPGVFDIW 561
Query: 425 -EY-ADFLSRLNDDRNIRA--LFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
Y F+ R + RA LFE+ L + PP + ++ + + E+ +G L +
Sbjct: 562 NTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYN 621
Query: 481 RRKEALSR 488
R + R
Sbjct: 622 RACSGVDR 629
Score = 60 (26.2 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 408 VFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465
+FE + + A L YA + + + RA++ A P+ ++ W + F
Sbjct: 655 IFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNF 714
Query: 466 EQMYGDLDSTLK 477
E +G+ ++T++
Sbjct: 715 EVAHGN-EATVR 725
Score = 58 (25.5 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALP---DSEMLR------------YA-FAELE 326
++W YA K AA+ V QRA +P D E ++ +A +A+ E
Sbjct: 440 NVWCAYAEMEMKHKRAKAALTVMQRAC-VVPKPGDYENMQSVQARVHRSPILWAMYADYE 498
Query: 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAA 370
E G + + +K+Y+ ++ V + + + + FL E E A
Sbjct: 499 ECCGTVESCRKVYDKMIELRVASPQMI-MNYAMFLEENEYFELA 541
Score = 54 (24.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 292 NAKSGSIDAAIKVFQRALKAL-PDSEM-----LRYAFAELEESRGAIAAAKKLYES-LLT 344
N G+ + I+ F+ A+K++ P ++ L A+L E G + AA+K +E+ +++
Sbjct: 371 NIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVIS 430
Query: 345 DSVNTTALAHI 355
+ LA++
Sbjct: 431 QFGGVSELANV 441
Score = 52 (23.4 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD--SEMLRY--AFAELEESRGAIAAA 335
D+W A +G +DAA K F+ A+ + SE+ A+AE+E AA
Sbjct: 402 DLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAA 458
Score = 43 (20.2 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 152 EESQRMIAIRKAYQRAVVTPTHHVEQL---WKDYENFENSVSRQLAKGLLSEYQ 202
E++ + A RK ++ AV++ V +L W Y E R AK L+ Q
Sbjct: 412 EDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKR--AKAALTVMQ 463
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 142 (55.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 69/283 (24%), Positives = 116/283 (40%)
Query: 238 EQQWIAWKRLLTFEKGN-PQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSG 296
E+ + W L + + + T +S + + TYE+CLM L+ P IW Y K G
Sbjct: 72 ERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRG 131
Query: 297 SIDAAIKVFQRALKALPDSEMLRY--AFAELEESRGAIAAAKKLYESLLTDSVNTTALA- 353
I +VF RAL++LP ++ +R + S ++Y L +N A
Sbjct: 132 LITETRRVFDRALRSLPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYL--KMNPKARED 189
Query: 354 HIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGL 413
+++++ + R + EAA++ + N + A+ L D K +F +
Sbjct: 190 YVEYL--IERDQIDEAAKELTTLVNQDQNVSEKGRTAHQLWTQLCDLISKNPVKIFSLNV 247
Query: 414 KRFMHEPAYILEYAD---FLSRLNDDRNIR-ALFERALSSLPPEESIEVWKRFTQFEQMY 469
+ + Y Y D FL D IR A FERA EE+I F Q+Y
Sbjct: 248 DAIIRQGIY--RYTDQVGFLWCSLADYYIRSAEFERARDVY--EEAIAKVSTVRDFAQVY 303
Query: 470 GDLDSTLKVEQRRKEALSRTGEEGASALED-SLQDVVSRYSFM 511
D+ E+R + + E+ E+ L+ + RY +
Sbjct: 304 ---DAYAAFEEREVSIMMQEVEQSGDPEEEVDLEWMFQRYQHL 343
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 46/206 (22%), Positives = 91/206 (44%)
Query: 278 LYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKK 337
++ P +W YA + G++++ KV+ + ++ S + +A E A +
Sbjct: 484 VHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEENEYFELAFQ 543
Query: 338 LYES--LLTDSVNTTALAHIQFIRFLRRTEG--VEAARKYFLDARKSPNFTYHVYVAYAL 393
YE L + + ++F++R G +E AR F ++ T+ Y+ + L
Sbjct: 544 AYEKGIALFKWPGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYI-FLL 602
Query: 394 MAFCQDKDPKLAH--NVFE---AGLKRF-MHEPAYILEYADFLSRLNDDRNIRALFERAL 447
A +++ H +++ +G+ R MH I Y + + R +FERA+
Sbjct: 603 YAKLEEEHGLARHALSIYNRACSGVDRADMHSMYNI--YIKKVQEMYGIAQCRPIFERAI 660
Query: 448 SSLPPEESIEVWKRFTQFEQMYGDLD 473
S LP ++S + R+ Q E G++D
Sbjct: 661 SELPEDKSRAMSLRYAQLETTVGEID 686
Score = 100 (40.3 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 38/117 (32%), Positives = 56/117 (47%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA--VNN---DDATKQL---FSRCLLICLQ 88
P Q IYE+ L+VF + K W Y++ + VN D++ + L + RCL+ +
Sbjct: 56 PAKQMFLIYERALAVFERSYKLWYHYLKYRESTIVNKCPTDNSWRALCDTYERCLMRLHK 115
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS 144
+P +W CY +V K+G ETR+ FD L + IW YI FL S
Sbjct: 116 MPRIWICYC----EVMIKRGLI--TETRRVFDRALRSLPVT-QHMRIWTLYIGFLTS 165
Score = 74 (31.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 28/105 (26%), Positives = 47/105 (44%)
Query: 304 VFQRALKALPD--SEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFL 361
+F+RA+ LP+ S + +A+LE + G I A+ +Y S H++F
Sbjct: 655 IFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEIS---DPKVHVKFWDTW 711
Query: 362 RRTE---GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPK 403
+ E G EA + L R+S +Y+V V + D + K
Sbjct: 712 KNFEVAHGNEATVRDMLRVRRSVEASYNVNVTLTSVQMRVDAERK 756
Score = 64 (27.6 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 28/128 (21%), Positives = 56/128 (43%)
Query: 367 VEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDP-KLAHNVFEAGLKRFMHEPAYIL- 424
VE+ RK + + + + + YA+ F ++ + +LA +E G+ F + +
Sbjct: 504 VESCRKVYDKMIELRVASPQMIMNYAM--FLEENEYFELAFQAYEKGIALFKWPGVFDIW 561
Query: 425 -EY-ADFLSRLNDDRNIRA--LFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
Y F+ R + RA LFE+ L + PP + ++ + + E+ +G L +
Sbjct: 562 NTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLARHALSIYN 621
Query: 481 RRKEALSR 488
R + R
Sbjct: 622 RACSGVDR 629
Score = 60 (26.2 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 408 VFEAGLKRFMHEP--AYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQF 465
+FE + + A L YA + + + RA++ A P+ ++ W + F
Sbjct: 655 IFERAISELPEDKSRAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVKFWDTWKNF 714
Query: 466 EQMYGDLDSTLK 477
E +G+ ++T++
Sbjct: 715 EVAHGN-EATVR 725
Score = 58 (25.5 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALP---DSEMLR------------YA-FAELE 326
++W YA K AA+ V QRA +P D E ++ +A +A+ E
Sbjct: 440 NVWCAYAEMEMKHKRAKAALTVMQRAC-VVPKPGDYENMQSVQARVHRSPILWAMYADYE 498
Query: 327 ESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAA 370
E G + + +K+Y+ ++ V + + + + FL E E A
Sbjct: 499 ECCGTVESCRKVYDKMIELRVASPQMI-MNYAMFLEENEYFELA 541
Score = 54 (24.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 292 NAKSGSIDAAIKVFQRALKAL-PDSEM-----LRYAFAELEESRGAIAAAKKLYES-LLT 344
N G+ + I+ F+ A+K++ P ++ L A+L E G + AA+K +E+ +++
Sbjct: 371 NIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYEDNGDLDAARKTFETAVIS 430
Query: 345 DSVNTTALAHI 355
+ LA++
Sbjct: 431 QFGGVSELANV 441
Score = 52 (23.4 bits), Expect = 0.00073, Sum P(3) = 0.00073
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPD--SEMLRY--AFAELEESRGAIAAA 335
D+W A +G +DAA K F+ A+ + SE+ A+AE+E AA
Sbjct: 402 DLWIGLAKLYEDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAA 458
Score = 43 (20.2 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 152 EESQRMIAIRKAYQRAVVTPTHHVEQL---WKDYENFENSVSRQLAKGLLSEYQ 202
E++ + A RK ++ AV++ V +L W Y E R AK L+ Q
Sbjct: 412 EDNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKR--AKAALTVMQ 463
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 159 (61.0 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 94/407 (23%), Positives = 176/407 (43%)
Query: 2 ASSSVEPESEENITGV-----ADKYN----VETAEILANSALHLPVAQAAPIYEQLLSVF 52
+ S E ES + I + A+ YN V+ ++L +A + QA E + ++F
Sbjct: 40 SDSEDEAESNQQIVTLESELSANPYNYDAYVQYIKLLRKTANLEKLRQAR---EAMSAIF 96
Query: 53 PTAAKFWKQYV--EAYMAVN-NDDATKQLFSRCLLICLQVPLWRCYIRFIRKVYEK-KG- 107
P + W ++ EA +A + N L+ R L V LW Y+ F+ + +G
Sbjct: 97 PLSPSLWLEWARDEASLAASENVPEIVMLYERGLSDYQSVSLWCDYLSFMLEFDPSVRGY 156
Query: 108 -TEGQEETRKAFDFMLSHVGSDISSGP-IWLEYITF----LKSLPALNAQEESQRMIAIR 161
+EG + R F+ + G ++ G IW Y F L ++ + +E ++++ IR
Sbjct: 157 PSEGISKMRSLFERAIPAAGFHVTEGNRIWEGYREFEQGVLATIDEADIEERNKQIQRIR 216
Query: 162 KAYQRAVVTPTHHVEQLWKDYENFE--NSVSRQLAKGLLSEYQSKYT----SARAVYRER 215
+ R + P ++ Y+ +E + + LS+ + A+ +Y ER
Sbjct: 217 SIFHRHLSVPLENLSSTLIAYKTWELEQGIDLDIGSDDLSKVSHQVAVANKKAQQMYSER 276
Query: 216 KKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCL 275
E I L+ T ++E +I +++ G+P R+ YE+ +
Sbjct: 277 AHLEENISKQDLS--DTEKFQEFMNYIKFEKT----SGDPTRVQAI---------YERAV 321
Query: 276 MYLYHYPDIWYDYATWNAKSGSIDAAIK-VFQRALKALPDSEML--RYAFAELEESRGAI 332
D+W DY + K+ + AI + RA ++ P + L RY A LE RG+
Sbjct: 322 AEYPVSSDLWIDYTVYLDKTLKVGKAITHAYSRATRSCPWTGDLWARYLLA-LE--RGS- 377
Query: 333 AAAKKLYESLLTDSVNTTALAHIQFIR-FLRRTEGVEAARKYFLDAR 378
A+ K++Y+ + S+ T + +++ +L R +G+ R+ L R
Sbjct: 378 ASEKEIYD-VFEKSLQCTFSSFEEYLDLYLTRVDGL---RRRMLSTR 420
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 143 (55.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 68/319 (21%), Positives = 133/319 (41%)
Query: 201 YQSKYTSARAVYRER--KKYCEEIDWNMLA-VPPTGSYKEEQQW----IAWKRLLTFEKG 253
Y + + R + E ++ E++ +A +PP ++E++ W W +E+
Sbjct: 336 YDAWFDYLRLLENEETDREEVEDVYERAIANIPPHSYFQEKRYWRRYIYLWINYALYEEL 395
Query: 254 NPQRIDTASSNKRIIFTYEQCLMYLYH----YPDIWYDYATWNAKSGSIDAAIKVFQRAL 309
+ D A Y+ C+ + H + +W +A + + ++AA K+ A+
Sbjct: 396 VAKDFDRARQ------VYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKIMGVAI 449
Query: 310 KALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEA 369
P ++ R A+ +LE +KLYE L S ++ I+F +
Sbjct: 450 GKCPKDKLFR-AYIDLELQLREFDRCRKLYEKFLESSPESSQ-TWIKFAELETLLGDTDR 507
Query: 370 ARKYFLDARKSP-----NFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL 424
+R F A + P + Y+ + + C++ + A +++E L+R H +I
Sbjct: 508 SRAVFTIAVQQPALDMPELLWKAYIDFEIA--CEEHEK--ARDLYETLLQRTNHIKVWI- 562
Query: 425 EYADFLSRLNDDRNIRALFERALSSLP---PEESIEVWKRFTQFEQMYGDLDSTLKVE-- 479
A+F + + R FERA SL EE + + + + + E GD ++ +VE
Sbjct: 563 SMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLLEAWKECETKSGDQEALKRVETM 622
Query: 480 --QRRKEALSRTGEEGASA 496
+R K+ E+G A
Sbjct: 623 MPRRVKKRRQIQTEDGVDA 641
Score = 138 (53.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 98/484 (20%), Positives = 190/484 (39%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQVPLWRCYIR 97
+ A ++++ +++ P A +FW +Y + N +Q+F R + W+ YI
Sbjct: 136 INHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYIN 195
Query: 98 FIRKVYEKKGTEGQEETRKAFDFMLSHV-GSDISSGPIWLEYITFLKSLPAL-NAQEESQ 155
F + E + R + L HV G ++ + W++Y F + + NA+ +
Sbjct: 196 FELRYKEI------DRARSVYQRFL-HVHGINVQN---WIKYAKFEERNGYIGNARAAYE 245
Query: 156 RMIAI--RKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSA--RAV 211
+ + + V+ E+ K++E +R + K L S T +
Sbjct: 246 KAMEYFGEEDINETVLVAFALFEERQKEHER-----ARGIFKYGLDNLPSNRTEEIFKHY 300
Query: 212 YRERKKYCEEIDWNMLAVPPTGS-YK---EEQ-----QWIAWKRLLTFEKGNPQRIDTAS 262
+ KK+ E + + + + Y+ EE W + RLL E+ + + ++
Sbjct: 301 TQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVY 360
Query: 263 SNKRII-----FTYEQCLMYLYHYPDIWYDYATWNAK-SGSIDAAIKVFQRALKALPDSE 316
+R I +Y Q Y Y +W +YA + + D A +V++ + +P
Sbjct: 361 --ERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKT 418
Query: 317 M----LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTAL-AHIQFIRFLRRTEGVEAAR 371
+ FA E + + AA+K+ + A+I LR +
Sbjct: 419 FTFAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLY 478
Query: 372 KYFLDARKSPNFTYHVYVAYA-LMAFCQDKDPKLAHNVFEAGLKR-FMHEPAYILE-YAD 428
+ FL++ SP + ++ +A L D D A VF +++ + P + + Y D
Sbjct: 479 EKFLES--SPESS-QTWIKFAELETLLGDTDRSRA--VFTIAVQQPALDMPELLWKAYID 533
Query: 429 FLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSR 488
F + R L+E L I+VW +FEQ G+ + K +R ++L
Sbjct: 534 FEIACEEHEKARDLYETLLQRT---NHIKVWISMAEFEQTIGNFEGARKAFERANQSLEN 590
Query: 489 TGEE 492
+E
Sbjct: 591 AEKE 594
Score = 133 (51.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 44/206 (21%), Positives = 89/206 (43%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
+E+ L + IW YA + I+ A VF RA+ +P + ++ +EE
Sbjct: 109 FERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYSYMEEVIE 168
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA 390
I A++++E + A +I F R + ++ AR + ++
Sbjct: 169 NIPGARQIFERWI--EWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIK 226
Query: 391 YALMAFCQDKDPKL--AHNVFEAGLKRFMHEP---AYILEYADFLSRLNDDRNIRALFER 445
YA ++++ + A +E ++ F E ++ +A F R + R +F+
Sbjct: 227 YAKF---EERNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKY 283
Query: 446 ALSSLPPEESIEVWKRFTQFEQMYGD 471
L +LP + E++K +TQ E+ +G+
Sbjct: 284 GLDNLPSNRTEEIFKHYTQHEKKFGE 309
Score = 63 (27.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 38 VAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLLICLQ-VPLWRCYI 96
+ +A ++E+ L V + W QY E M + + +F R + I + + W Y
Sbjct: 102 IQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKY- 160
Query: 97 RFIRKVYE 104
++ +V E
Sbjct: 161 SYMEEVIE 168
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 154 (59.3 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 56/221 (25%), Positives = 106/221 (47%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
+E+ L Y +W Y K+ +I+ A +F RA+ LP + L Y + +EE G
Sbjct: 93 FERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLG 152
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYV 389
I ++++E L + + +IR RR E AR Y P T ++
Sbjct: 153 NITGCRQVFERWLKWEPDENCW--MSYIRMERRYHENERARGIYERFVVVHPEVTN--WL 208
Query: 390 AYALMAFCQD-KDPKLAHNVFEAGL----KRFMHEPAYILEYADFLSRLNDDRNIRALFE 444
+A F ++ + V+ A + + F++E + + +A F R + R +F+
Sbjct: 209 RWA--RFEEECGNAANVRQVYLAAIDALGQEFLNE-RFFIAFAKFEIRQKEYERARTIFK 265
Query: 445 RALSSLPPEESIEVWKRFTQFEQMYGD---LDSTLKVEQRR 482
A+ +P +S+E++K +T FE+ +GD ++ST+ +++RR
Sbjct: 266 YAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTV-LDKRR 305
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 147 (56.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 54/192 (28%), Positives = 87/192 (45%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLL 343
+W YA + K+ S++ A V+ RA+ LP + L Y F +EE G IA A+++ E +
Sbjct: 93 VWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWI 152
Query: 344 TDSVNTTALAHIQFIRFLRRTEGVEAARK-YFLDARKSPNFTYHVYVAYALMAFCQDKDP 402
S + A + FI+F + +E AR Y P + Y+ YA +
Sbjct: 153 HCSPDQQAW--LCFIKFELKYNEIECARSIYERFVLCHPKVS--AYIRYAKFEM-KHGQV 207
Query: 403 KLAHNVFEAGLKRFMH-EPAYIL--EYADFLSRLNDDRNIRALFERALSSLPPEESIEVW 459
+LA VFE K E A IL +A+F + ++ AL +P + ++
Sbjct: 208 ELAMKVFERAKKELADDEEAEILFVAFAEFEEQ----------YKFALDQIPKGRAENLY 257
Query: 460 KRFTQFEQMYGD 471
+F FE+ GD
Sbjct: 258 SKFVAFEKQNGD 269
>DICTYBASE|DDB_G0277977 [details] [associations]
symbol:xab2 "TPR-like helical domain-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 dictyBase:DDB_G0277977 GO:GO:0005634 GO:GO:0008380
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006281
GO:GO:0006397 GO:GO:0006351 Gene3D:1.25.40.10 RefSeq:XP_642044.1
ProteinModelPortal:Q54Z08 STRING:Q54Z08 EnsemblProtists:DDB0233461
GeneID:8621256 KEGG:ddi:DDB_G0277977 eggNOG:NOG289100 KO:K12867
OMA:PRSYKLW ProtClustDB:CLSZ2729105 Uniprot:Q54Z08
Length = 850
Score = 106 (42.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 54/196 (27%), Positives = 89/196 (45%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYV-EAYMAV-------NNDDATKQLFSRCLLICLQ 88
P Q IYE+ + P + K W QY+ E +A+ N+ +A LF R L+ +
Sbjct: 59 PQKQRNYIYERAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDK 118
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSG-PIWLEYITFL--KS 144
+P +W Y F+ + ++K T TRK FD L + ++ IW EY F+ +S
Sbjct: 119 MPRIWIEYCEFL--MIQEKITL----TRKTFDRAL--IALPVTQHYRIWNEYTKFILKRS 170
Query: 145 LPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSK 204
+P+L +R + I+ ++ ++E L K E E V QL K LL + K
Sbjct: 171 IPSLTCIRVYKRYLKIQP--EKV----EEYIEYLIKIKEWQE--VVNQLIK-LLDNVKFK 221
Query: 205 YTSARAVYRERKKYCE 220
++ + + CE
Sbjct: 222 SIKGKSRHDHWLQLCE 237
Score = 89 (36.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 409 FEAGLKRFM--H-EPAYILEYADFLSRLNDDR--NIRALFERALSSLPPEESIEVWKRFT 463
+E G++ F+ H + +I F+ R + R LFE+ LS +PP+ESI + +
Sbjct: 554 YEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYA 613
Query: 464 QFEQMYGDLDSTLKVEQRRKEALSR 488
FE+ YG ++ V R +++ +
Sbjct: 614 NFEEQYGLARHSMAVYDRAAKSVDK 638
Score = 86 (35.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 38/172 (22%), Positives = 77/172 (44%)
Query: 322 FAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSP 381
+ +LEES G K +YE ++ V T + + F ++L + E K + +
Sbjct: 503 YVDLEESFGTFHNTKSIYEKMIQLKVVTPQII-LNFAKYLEENKYFEDMFKAYEHGVQLF 561
Query: 382 NFTY--HVYVAYALMAFCQD-KDPKL--AHNVFEAGLKRFMHEPAYI--LEYADFLSRLN 434
F + +++ Y L F Q KL ++FE L + + + I L YA+F +
Sbjct: 562 LFPHVQDIWITY-LTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYLMYANFEEQYG 620
Query: 435 DDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEAL 486
R+ A+++RA S+ E+ +++ + + ++ T ++ + E L
Sbjct: 621 LARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIEQL 672
Score = 66 (28.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 26/104 (25%), Positives = 46/104 (44%)
Query: 303 KVFQRALKALPDSEM--LRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRF 360
++F +A++ LPD + + FA++E+ G I A+ +Y S T++ +
Sbjct: 663 EIFSKAIEQLPDQYVRDMCLKFADMEKKYGEIDRARSIYIHGSQFSDPRTSMFYWNTWSD 722
Query: 361 LRRTEGVEAARKYFLDARKSPNFTYHVY-VAYALMAFCQDKDPK 403
+ G E K L R+S +Y AL+ +KD K
Sbjct: 723 FEKLHGNEDTFKEMLRIRRSVQASYITQNPTLALLNKLNNKDDK 766
>DICTYBASE|DDB_G0283307 [details] [associations]
symbol:prpf39 "pre-mRNA processing factor 39"
species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 Pfam:PF05843 SMART:SM00386
dictyBase:DDB_G0283307 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006397 Gene3D:1.25.40.10 EMBL:AAFI02000052 KO:K13217
eggNOG:NOG298273 RefSeq:XP_639156.1 ProteinModelPortal:Q54R91
EnsemblProtists:DDB0233547 GeneID:8624026 KEGG:ddi:DDB_G0283307
InParanoid:Q54R91 OMA:ADHEYAH Uniprot:Q54R91
Length = 699
Score = 149 (57.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 78/369 (21%), Positives = 158/369 (42%)
Query: 44 IYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCLL-ICLQVPLWRCYI-RFIRK 101
+Y + L+ FP +WK++ + A NN + ++F + + I V +W Y I K
Sbjct: 60 VYSEFLNEFPLCFLYWKRFADHEYAHNNTTQSIEIFEKAVSSIPHSVDIWLNYCTHLIDK 119
Query: 102 VYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIR 161
Y +E R F ++ +G+D SG W +YI F +E+ + +I
Sbjct: 120 SYPV------DEIRSVFKRGINIIGTDYQSGKFWEKYIEF-------EMGQENNELASI- 165
Query: 162 KAYQRAVVTPTHHVEQLWKDY-ENFEN-SVSRQLAKGLLSEYQSKYTSARA-VYRERKK- 217
+ + TP +++ + + +N + ++ L + EY + V + R+K
Sbjct: 166 --FNSILKTPLENLQIFNEKFKDNIDRIKINDMLTEEERKEYTGYDAETKQMVLQNREKW 223
Query: 218 YCEEIDW-----NMLAVPPTGSYK-----EEQQWIAWKRLLTFEKGNPQRIDTASSNKRI 267
Y E ++ N ++ + +E W+ + + +P + + + +
Sbjct: 224 YHETLEKISKRSNFESIVNKRFFFHIQPIDEMTLSVWRSYFNYMESDP-----SVTQEEV 278
Query: 268 IFTYEQCLMYLYHYPDIWYDYATWNAKS---GSIDAAIK-VFQRALKALPDSEM---LRY 320
I +E+CL+ +Y + W Y + +S + + I+ +F+RA K L Y
Sbjct: 279 IKLFERCLVPCCYYSEFWLKYIKFLQESYVGDNKNELIESIFERATKIFLKKRADIHLEY 338
Query: 321 AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHI-QFIRFLRRTEGVEAARKYF---LD 376
+ +E + G I A + E++ S+ T L I + + F RR ++ A ++F L
Sbjct: 339 SLF-VESTLGNIEKAFSILENI--HSLLPTHLEVILRLVSFKRRNHSIQQANQFFKKVLT 395
Query: 377 ARKSPNFTY 385
+ +S + TY
Sbjct: 396 SLQSDSKTY 404
Score = 41 (19.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 444 ERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTG--EEGASALED-S 500
E + L +E + +W + +F Y + K + + E+L G E +L D +
Sbjct: 548 EILVCKLNDDEKLNIWNDYLEFNLQYDNDIKGYKELKNKFESLYPDGKPESKKRSLTDMN 607
Query: 501 LQDVVSRYS 509
LQ S S
Sbjct: 608 LQSSSSSSS 616
>ASPGD|ASPL0000052140 [details] [associations]
symbol:AN0111 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
Length = 851
Score = 108 (43.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 45/198 (22%), Positives = 85/198 (42%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYE--- 340
+W Y SI+ KV++R + + +A L E + K+YE
Sbjct: 512 LWSFYVDLVESVSSIEETKKVYERIFELRIATPQTVVNYANLLEEHKYFEESFKVYERGL 571
Query: 341 SLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKS--PNFTYHVYVAYALMAFCQ 398
L T V L ++ + + R G+E R F A P F +Y+ Y + +
Sbjct: 572 DLFTYPV-AFELWNLYLTKAVDRKIGIERLRDLFEQALDGCPPKFARPLYLMYGNLE--E 628
Query: 399 DKD-PKLAHNVFEAGLKRFMHEPAY-ILEYADFLSRLNDDR-NIRALFERALSSLPPEES 455
++ + A ++E + E + + E+ S N + R ++ERA+++LP E+
Sbjct: 629 ERGLARHAMRIYERATRAVSDEDRFEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEA 688
Query: 456 IEVWKRFTQFEQMYGDLD 473
E+ +F + E+ G++D
Sbjct: 689 KEMCLKFAEMERRLGEID 706
Score = 83 (34.3 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 33 ALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNNDDATKQ---------LFSRC 82
AL + + + E+ P + K WK Y+E + N +A K LF R
Sbjct: 60 ALIISILNDFQVMERACKQLPRSYKLWKMYLEFRTKHLKNRNAIKYRAEFQKVNTLFERA 119
Query: 83 LLICLQVP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITF 141
L++ ++P +W Y+ F+ + + T+ TR+ FD L + IW Y TF
Sbjct: 120 LILLNKMPRIWEMYLTFM--LQQPLVTQ----TRRTFDRALRALPVT-QHNRIWKLYKTF 172
Query: 142 LKSLPALNAQEESQRMIAIR----KAYQRAVVTPTHHVEQLWKDYENFEN 187
+S A + R + I + Y +V H+ + + + E +N
Sbjct: 173 ARSASGQTAVKIWARYMQIHPENAEEYINLLVEMGHYTDAIKRYMEILDN 222
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 138 (53.6 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 82/380 (21%), Positives = 162/380 (42%)
Query: 11 EENITGVADKYN--VETAEILANSA-LHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYM 67
EE ++ A YN V+ ++L LH + +A +++ +FP + W +++ +
Sbjct: 65 EEQLSINAFDYNCHVDLIKLLRQEGKLHR-LRKAR---QKMSELFPLTEEIWLDWLKDEI 120
Query: 68 AVNNDDATKQ----LFSRCL--LICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFM 121
+ D++ ++ LF R + +C ++ W Y+++ +G G E R F+
Sbjct: 121 RITEDESDRERVYELFERAIKDYVCPEI--WLEYVQYSIGGMGAQG--GIERVRSIFERA 176
Query: 122 LSHVGSDISSGP-IWLEY----ITFLKSL---PALNAQEESQRMIA-----IRKAYQRAV 168
L+ VG ++ G IW Y I L ++ P +E Q +++ I ++R +
Sbjct: 177 LTAVGLHMTKGASIWEAYREFEIVILSTVQPPPGTVPSQEQQELLSAQLERIHTLFRRQL 236
Query: 169 VTPTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA 228
P +E + +Y ++ + G+ +Y A + K Y E + +++
Sbjct: 237 AVPLMDMEGTYAEYSDWADD-------GVPETVTHQYRRALQQMEKGKPYEEAL---LVS 286
Query: 229 VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDY 288
PP E Q +I ++ ++G+P R+ R + E CL+ PD+W Y
Sbjct: 287 EPP--KLAEYQSYIDFE----IKEGDPARVQIIFG--RALA--ENCLV-----PDLWIKY 331
Query: 289 ATWNAKSGSI-DAAIKVFQRALKALPDSEMLRYAFAELEESRGAI-AAAKKLYESLLTDS 346
T+ + I D + +RA++ P + L ++ E GA K ++E L
Sbjct: 332 TTYLDRQLKIKDLVLSAHERAVRNCPWTMGLWKSYLLALERHGADHQTVKDVFEKALNAG 391
Query: 347 -VNTTALAHI--QFIRFLRR 363
+ T I ++ +LRR
Sbjct: 392 FIQATDYVEIWQSYLDYLRR 411
Score = 51 (23.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 424 LEYADFLSRLNDDRNIRALFERAL--SSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQR 481
LEY + D + R RA+ +S PE +V FE++ G L+ Q+
Sbjct: 493 LEYYNLERSYGDAAHCRKALHRAVQCTSDYPEHVCDV---LLNFERVEGSLEDWDAAVQK 549
Query: 482 RKEALSRTGEEGASALE 498
+ L+R E+ A E
Sbjct: 550 TETKLNRVCEQRARVAE 566
Score = 38 (18.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/52 (26%), Positives = 19/52 (36%)
Query: 458 VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASAL------EDSLQD 503
+W + E+ YGD K R + S E L E SL+D
Sbjct: 491 MWLEYYNLERSYGDAAHCRKALHRAVQCTSDYPEHVCDVLLNFERVEGSLED 542
>ZFIN|ZDB-GENE-030616-420 [details] [associations]
symbol:prpf39 "PRP39 pre-mRNA processing factor 39
homolog (yeast)" species:7955 "Danio rerio" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386
ZFIN:ZDB-GENE-030616-420 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
Gene3D:1.25.40.10 eggNOG:COG5107 EMBL:AL591492 EMBL:BC116540
IPI:IPI00481955 RefSeq:NP_001004520.1 UniGene:Dr.340
ProteinModelPortal:Q1JPZ7 STRING:Q1JPZ7 PRIDE:Q1JPZ7
Ensembl:ENSDART00000061672 GeneID:368864 KEGG:dre:368864 CTD:55015
GeneTree:ENSGT00390000005033 HOGENOM:HOG000010277
HOVERGEN:HBG082194 InParanoid:Q1JPZ7 KO:K13217 OMA:GWVYLLQ
OrthoDB:EOG49GKG9 NextBio:20813235 ArrayExpress:Q1JPZ7 Bgee:Q1JPZ7
Uniprot:Q1JPZ7
Length = 752
Score = 136 (52.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 72/340 (21%), Positives = 135/340 (39%)
Query: 52 FPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQVPLWRCYIRFIRKVYEKKGTEG 110
+P +WK+Y + +++ R L I L V LW YI F+R+ + E
Sbjct: 196 YPYCYGYWKKYADIERKHGYIQMADEVYRRGLQAIPLSVDLWLHYITFLRENQDTSDGEA 255
Query: 111 QEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVT 170
+ R +++ + G+D S +W YI + + E ++ + Y R +
Sbjct: 256 ESRIRASYEHAVLACGTDFRSDRLWEAYIAW---------ETEQGKLANVTAIYDRLLCI 306
Query: 171 PTHHVEQLWKDYENFENSVSRQLAKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLA-- 228
PT Q ++ F++ V K LSE ++ S R K + D A
Sbjct: 307 PTQLYSQ---HFQKFKDHVQSNNPKHFLSE--EEFVSLRVELANANKPSGDEDAETEAPG 361
Query: 229 --VPPTGSYKEEQQWIAWKRLLTFEKGNPQRIDTASS----NKRII---FTYEQCLMYLY 279
+PP G+ E+ A KR+ E + I+T N+ + + +E+ + Y
Sbjct: 362 EELPP-GT--EDLPDPA-KRVTEIENMRHKVIETRQEMFNHNEHEVSKRWAFEEGIKRPY 417
Query: 280 -HYPDI-------WYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGA 331
H + W +Y + ++G+ + + +F+R L A E +A+ ES
Sbjct: 418 FHVKALEKTQLNNWREYLDFELENGTPERVVVLFERCLIACALYEEFWIKYAKYLESYST 477
Query: 332 IAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAAR 371
A + +Y+ T + H+ + F + ++ AR
Sbjct: 478 -EAVRHIYKKACTVHLPKKPNVHLLWAAFEEQQGSIDEAR 516
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 123 (48.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 54/225 (24%), Positives = 93/225 (41%)
Query: 271 YEQCLMYLYHY---PDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 327
+E C L HY P +W +S SID A + + + LK P S L + LEE
Sbjct: 698 HELCTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLLLSRLEE 757
Query: 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSPNFTYH 386
G + A+ + E + + L ++ +R R A A ++ PN
Sbjct: 758 KVGQLTRARAILEKARLKNPQSPEL-WLESVRLEYRAGLKNIANTLMAKALQECPNSG-- 814
Query: 387 VYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERA 446
+ ++ F + + + +V +A LK+ H+P +L A R F R
Sbjct: 815 --ILWSEAVFLEARPQRKTKSV-DA-LKKCEHDPHVLLAVAKLFWSERKITKAREWFLRT 870
Query: 447 LSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGE 491
+ + P+ + W F +FE +G + +V++R + A R GE
Sbjct: 871 VK-IEPDLG-DAWGFFYKFELQHGTEEQQHEVKKRCENAEPRHGE 913
Score = 57 (25.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 30 ANSAL-HLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNND--DATKQLFSRCLLIC 86
A+S + H + A IY L VFP+ W + AY NN ++ + L R + C
Sbjct: 550 ADSCVSHGALECARAIYAHALQVFPSKKSVWLR--AAYFEKNNGTRESLEALLQRAVAHC 607
Query: 87 LQVP-LW 92
+ LW
Sbjct: 608 PKAEVLW 614
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 126 (49.4 bits), Expect = 0.00029, P = 0.00029
Identities = 42/208 (20%), Positives = 91/208 (43%)
Query: 271 YEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRG 330
+E+ L + P +W YA K+ +I+ A ++ RA+ LP L + + +E+ G
Sbjct: 98 FERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLG 157
Query: 331 AIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYV- 389
AA+ ++E + A +++F +R + E R F H Y+
Sbjct: 158 NYPAARAIFERWMQWKPEPQAWN--SYLKFEQRLKLFENTRLIF-----EKYILVHPYIK 210
Query: 390 AYALMAFCQDKDPKL--AHNVFEAGLKRFMHEPA----YILEYADFLSRLNDDRNIRALF 443
+ +++ + A +F+ ++ F+ E + +A F + + R ++
Sbjct: 211 TWIKYTKFEERLGNIENARTIFQRAIE-FLGEDGNDEQLFIAFAKFEEKYKEIERARVIY 269
Query: 444 ERALSSLPPEESIEVWKRFTQFEQMYGD 471
+ A+ +P + +++ FT FE+ +GD
Sbjct: 270 KYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 100 (40.3 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 50/198 (25%), Positives = 88/198 (44%)
Query: 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358
D + V R K+L ML A+LEES G + K +Y+ +L + T + I +
Sbjct: 471 DGSEPVQNRVYKSLKVWSML----ADLEESLGTFQSTKAVYDRILDLRIATPQIV-INYA 525
Query: 359 RFLRRTEGVEAARKYF---LDARKSPNFTYHVYVAYALMAFCQDKDPKL--AHNVFEAGL 413
FL + E + K + + K PN + ++ Y + KL A ++FE L
Sbjct: 526 MFLEEHKYFEESFKAYERGISLFKWPNVS-DIWSTYLTKFIARYGGRKLERARDLFEQAL 584
Query: 414 KRFMHEPA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMY 469
+ A Y+L YA R+ A++ERA ++ P + +++ + + ++Y
Sbjct: 585 DGCPPKYAKTLYLL-YAQLEEEWGLARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIY 643
Query: 470 GDLDSTLKVEQRRKEALS 487
G + T + Q+ E LS
Sbjct: 644 G-VTHTRGIYQKAIEVLS 660
Score = 79 (32.9 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNN----DDATKQL---FSRCLLICLQ 88
P + +YE+ L + P + K W +Y++A A V + D A + + R + +
Sbjct: 49 PKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHK 108
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 147
+P LW Y +F+ + + T TR+ FD L + S IW Y+ FL+S P
Sbjct: 109 MPRLWLDYCQFLMD--QGRVTH----TRRTFDRALRALPITQHSR-IWPLYLRFLRSHPL 161
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE-YQSKYT 206
E + R R+ + + + ++E L K + + + R LA + E + SK
Sbjct: 162 ---PETAVR--GYRRFLKLSPESAEEYIEYL-KSSDRLDEAAQR-LATVVNDERFVSK-- 212
Query: 207 SARAVYRERKKYCEEIDWN 225
+ ++ Y+ + C+ I N
Sbjct: 213 AGKSNYQLWHELCDLISQN 231
Score = 40 (19.1 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310
+W +A + +G +D A + ++A K
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATK 423
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 114 (45.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 55/230 (23%), Positives = 101/230 (43%)
Query: 11 EENITGVADKYNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYV--EAYMA 68
EE ++ YN E++ L +++ +++ +FP + W +++ E MA
Sbjct: 103 EEQLSINGYDYNCHV-ELIRLLRLEGELSRVRAARQKMSELFPLTEELWLEWLHDEISMA 161
Query: 69 VNNDDATK--QLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVG 126
++ D +LF R + + +W Y ++ +KG G E+ R F+ LS VG
Sbjct: 162 MDGLDREHVYELFERAVKDYICPNIWLEYGQYSVGGIGQKG--GLEKVRSVFERALSSVG 219
Query: 127 SDISSG-PIWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENF 185
++ G IW Y F ++ E+ R+ + ++R + P + +E + +YE +
Sbjct: 220 LHMTKGLAIWEAYREFESAIV------EAARLEKVHSLFRRQLAIPLYEMEATFAEYEEW 273
Query: 186 EN-----SV--SRQLAKGLLSEYQSKYTSA--RAVYRERKKYCEEIDWNM 226
SV S Q A G L +Y+ Y A +A +Y ID+ M
Sbjct: 274 SEEPMPESVLQSYQKALGQLEKYKP-YEEALLQAEAPRLAEYQAYIDFEM 322
Score = 62 (26.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 435 DDRNIRALFERALSS--LPPEESIEVWKRFTQFEQMYGDL--DSTLKVEQRRKEALSRTG 490
D + I A FE ALS+ + + +E+W+ + + + D DS+ ++E+ R +R
Sbjct: 396 DHQTISATFENALSAGFIQATDYVEIWQVYLDYLRRRVDFRQDSSKELEELRS-MFTR-- 452
Query: 491 EEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQEW 529
ALE Q+V R+S S D L+ Q W
Sbjct: 453 -----ALEYLQQEVEERFS-------ESGDPSCLIMQSW 479
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 131 (51.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 49/221 (22%), Positives = 101/221 (45%)
Query: 283 DIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESL 342
++W G+ + +KVF+RA++ ++ ++ ++ S A++LY ++
Sbjct: 1629 NVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQH-LCDIYASSEKYKQAEELYHTM 1687
Query: 343 LTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVA--YALMAFCQDK 400
L ++ +++ FL + EA + A K+ HV V +A + F +
Sbjct: 1688 LRRFRQEKSV-WLKYASFLLKQGQTEATHRLLERALKALPTKEHVDVISRFAQLEF-RFG 1745
Query: 401 DPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS-SLPPEESIEVW 459
DP+ A +FE+ L + Y D + + + IR +FER + +L P++ +
Sbjct: 1746 DPEHAKALFESTLNSYPKRTDIWSIYMDIMIKQGSQKEIRDIFERVIHLNLAPKKMKFFF 1805
Query: 460 KRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDS 500
KR+ +E+ YG ++ + V+ E + E S+L D+
Sbjct: 1806 KRYLDYEKKYGTTETVMAVKTAALEYV-----EAKSSLADT 1841
Score = 50 (22.7 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 40 QAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFSRCL-LICLQ 88
Q+A +++L+ P ++ W QY+ ++ + + + R L IC +
Sbjct: 1573 QSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTICFR 1622
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 99 (39.9 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 50/198 (25%), Positives = 88/198 (44%)
Query: 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358
D + V R K+L ML A+LEES G + K +Y+ +L + T + I +
Sbjct: 468 DGSEPVQNRVYKSLKVWSML----ADLEESLGTFQSTKAVYDRILDLRIATPQIV-INYA 522
Query: 359 RFLRRTEGVEAARKYF---LDARKSPNFTYHVYVAYALMAFCQDKDPKL--AHNVFEAGL 413
FL + E + K + + K PN + ++ Y + KL A ++FE L
Sbjct: 523 MFLEEHKYFEESFKAYERGISLFKWPNVS-DIWSTYLTKFIARYGGRKLERARDLFEQAL 581
Query: 414 KRFMHEPA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMY 469
+ A Y+L YA R+ A++ERA ++ P + +++ + + ++Y
Sbjct: 582 DGCPPKYAKTLYLL-YAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIY 640
Query: 470 GDLDSTLKVEQRRKEALS 487
G + T + Q+ E LS
Sbjct: 641 G-VTHTRGIYQKAIEVLS 657
Score = 79 (32.9 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNN----DDATKQL---FSRCLLICLQ 88
P + +YE+ L + P + K W +Y++A A V + D A + + R + +
Sbjct: 46 PKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHK 105
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 147
+P LW Y +F+ + + T TR+ FD L + S IW Y+ FL+S P
Sbjct: 106 MPRLWLDYCQFLMD--QGRVTH----TRRTFDRALRALPITQHSR-IWPLYLRFLRSHPL 158
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE-YQSKYT 206
E + R R+ + + + ++E L K + + + R LA + E + SK
Sbjct: 159 ---PETAVR--GYRRFLKLSPESAEEYIEYL-KSSDRLDEAAQR-LATVVNDERFVSK-- 209
Query: 207 SARAVYRERKKYCEEIDWN 225
+ ++ Y+ + C+ I N
Sbjct: 210 AGKSNYQLWHELCDLISQN 228
Score = 40 (19.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310
+W +A + +G +D A + ++A K
Sbjct: 394 LWVAFAKFYEDNGQLDDARVILEKATK 420
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 99 (39.9 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 50/198 (25%), Positives = 88/198 (44%)
Query: 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358
D + V R K+L ML A+LEES G + K +Y+ +L + T + I +
Sbjct: 471 DGSEPVQNRVYKSLKVWSML----ADLEESLGTFQSTKAVYDRILDLRIATPQIV-INYA 525
Query: 359 RFLRRTEGVEAARKYF---LDARKSPNFTYHVYVAYALMAFCQDKDPKL--AHNVFEAGL 413
FL + E + K + + K PN + ++ Y + KL A ++FE L
Sbjct: 526 MFLEEHKYFEESFKAYERGISLFKWPNVS-DIWSTYLTKFIARYGGRKLERARDLFEQAL 584
Query: 414 KRFMHEPA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMY 469
+ A Y+L YA R+ A++ERA ++ P + +++ + + ++Y
Sbjct: 585 DGCPPKYAKTLYLL-YAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIY 643
Query: 470 GDLDSTLKVEQRRKEALS 487
G + T + Q+ E LS
Sbjct: 644 G-VTHTRGIYQKAIEVLS 660
Score = 79 (32.9 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNN----DDATKQL---FSRCLLICLQ 88
P + +YE+ L + P + K W +Y++A A V + D A + + R + +
Sbjct: 49 PKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHK 108
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 147
+P LW Y +F+ + + T TR+ FD L + S IW Y+ FL+S P
Sbjct: 109 MPRLWLDYCQFLMD--QGRVTH----TRRTFDRALRALPITQHSR-IWPLYLRFLRSHPL 161
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE-YQSKYT 206
E + R R+ + + + ++E L K + + + R LA + E + SK
Sbjct: 162 ---PETAVR--GYRRFLKLSPESAEEYIEYL-KSSDRLDEAAQR-LATVVNDERFVSK-- 212
Query: 207 SARAVYRERKKYCEEIDWN 225
+ ++ Y+ + C+ I N
Sbjct: 213 AGKSNYQLWHELCDLISQN 231
Score = 40 (19.1 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310
+W +A + +G +D A + ++A K
Sbjct: 397 LWVAFAKFYEDNGQLDDARVILEKATK 423
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 99 (39.9 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 50/198 (25%), Positives = 88/198 (44%)
Query: 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358
D + V R K+L ML A+LEES G + K +Y+ +L + T + I +
Sbjct: 471 DGSEPVQNRVYKSLKVWSML----ADLEESLGTFQSTKAVYDRILDLRIATPQIV-INYA 525
Query: 359 RFLRRTEGVEAARKYF---LDARKSPNFTYHVYVAYALMAFCQDKDPKL--AHNVFEAGL 413
FL + E + K + + K PN + ++ Y + KL A ++FE L
Sbjct: 526 MFLEEHKYFEESFKAYERGISLFKWPNVS-DIWSTYLTKFIARYGGRKLERARDLFEQAL 584
Query: 414 KRFMHEPA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMY 469
+ A Y+L YA R+ A++ERA ++ P + +++ + + ++Y
Sbjct: 585 DGCPPKYAKTLYLL-YAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIY 643
Query: 470 GDLDSTLKVEQRRKEALS 487
G + T + Q+ E LS
Sbjct: 644 G-VTHTRGIYQKAIEVLS 660
Score = 79 (32.9 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNN----DDATKQL---FSRCLLICLQ 88
P + +YE+ L + P + K W +Y++A A V + D A + + R + +
Sbjct: 49 PKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHK 108
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 147
+P LW Y +F+ + + T TR+ FD L + S IW Y+ FL+S P
Sbjct: 109 MPRLWLDYCQFLMD--QGRVTH----TRRTFDRALRALPITQHSR-IWPLYLRFLRSHPL 161
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE-YQSKYT 206
E + R R+ + + + ++E L K + + + R LA + E + SK
Sbjct: 162 ---PETAVR--GYRRFLKLSPESAEEYIEYL-KSSDRLDEAAQR-LATVVNDERFVSK-- 212
Query: 207 SARAVYRERKKYCEEIDWN 225
+ ++ Y+ + C+ I N
Sbjct: 213 AGKSNYQLWHELCDLISQN 231
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310
+W +A + +G +D A + ++A K
Sbjct: 397 LWVAFAKFYEDNGQLDDARIILEKATK 423
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 99 (39.9 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 50/198 (25%), Positives = 88/198 (44%)
Query: 299 DAAIKVFQRALKALPDSEMLRYAFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFI 358
D + V R K+L ML A+LEES G + K +Y+ +L + T + I +
Sbjct: 471 DGSEPVQNRVYKSLKVWSML----ADLEESLGTFQSTKAVYDRILDLRIATPQIV-INYA 525
Query: 359 RFLRRTEGVEAARKYF---LDARKSPNFTYHVYVAYALMAFCQDKDPKL--AHNVFEAGL 413
FL + E + K + + K PN + ++ Y + KL A ++FE L
Sbjct: 526 MFLEEHKYFEESFKAYERGISLFKWPNVS-DIWSTYLTKFIARYGGRKLERARDLFEQAL 584
Query: 414 KRFMHEPA---YILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQ-FEQMY 469
+ A Y+L YA R+ A++ERA ++ P + +++ + + ++Y
Sbjct: 585 DGCPPKYAKTLYLL-YAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIY 643
Query: 470 GDLDSTLKVEQRRKEALS 487
G + T + Q+ E LS
Sbjct: 644 G-VTHTRGIYQKAIEVLS 660
Score = 79 (32.9 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 49/199 (24%), Positives = 89/199 (44%)
Query: 37 PVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMA-VNN----DDATKQL---FSRCLLICLQ 88
P + +YE+ L + P + K W +Y++A A V + D A + + R + +
Sbjct: 49 PKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHK 108
Query: 89 VP-LWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKSLPA 147
+P LW Y +F+ + + T TR+ FD L + S IW Y+ FL+S P
Sbjct: 109 MPRLWLDYCQFLMD--QGRVTH----TRRTFDRALRALPITQHSR-IWPLYLRFLRSHPL 161
Query: 148 LNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE-YQSKYT 206
E + R R+ + + + ++E L K + + + R LA + E + SK
Sbjct: 162 ---PETAVR--GYRRFLKLSPESAEEYIEYL-KSSDRLDEAAQR-LATVVNDERFVSK-- 212
Query: 207 SARAVYRERKKYCEEIDWN 225
+ ++ Y+ + C+ I N
Sbjct: 213 AGKSNYQLWHELCDLISQN 231
Score = 39 (18.8 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 284 IWYDYATWNAKSGSIDAAIKVFQRALK 310
+W +A + +G +D A + ++A K
Sbjct: 397 LWVAFAKFYEDNGQLDDARIILEKATK 423
>TAIR|locus:2184236 [details] [associations]
symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
Uniprot:Q9LKU3
Length = 917
Score = 112 (44.5 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 58/259 (22%), Positives = 116/259 (44%)
Query: 246 RLLTFEKGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVF 305
RL +F + + T S + + YE+ L P I +YA ++ + A KV+
Sbjct: 516 RLWSFYVDLEESLGTLESTRAV---YEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVY 572
Query: 306 QRALKAL--PDSEMLRYAF-AELEESRGA--IAAAKKLYESLLT----DSVNTTALAHIQ 356
+R +K P + + + + + G + A++L+E ++ D+V T ++Q
Sbjct: 573 ERGVKIFKYPHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTL---YLQ 629
Query: 357 FIRFLRRTEGV-EAARKYFLDA-RKSPNFT----YHVYVAYALMAFCQDKDPKLAHNVFE 410
+ + L G+ + A K + +A +K P Y +Y++ A F + ++ E
Sbjct: 630 YAK-LEEDYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIE 688
Query: 411 AGLKRFMHEPAYIL--EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468
+GL H+ I+ ++A+ L + RAL++ + P E W ++ +FE
Sbjct: 689 SGLP---HKDVKIMCIKFAELERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFEVQ 745
Query: 469 YGDLDSTLKVEQRRKEALS 487
+G+ D T + R K ++S
Sbjct: 746 HGNED-TYREMLRIKRSVS 763
Score = 60 (26.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 36/145 (24%), Positives = 60/145 (41%)
Query: 44 IYEQLLSVFPTAAKFWKQYV-EAYMAVNN-------DDATKQLFSRCLLICLQVP-LWRC 94
IYE+ L P + K W Y+ E V N D+ F R L+ ++P +W
Sbjct: 48 IYERALKALPGSYKLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERGLVTMHKMPRIWVM 107
Query: 95 YIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGPIWLEYITFLKS--LPALNAQE 152
Y++ + ++ T TR+ FD L + IW Y+ F+ +P E
Sbjct: 108 YLQTL--TVQQLITR----TRRTFDRALCALPVT-QHDRIWEPYLVFVSQNGIPI----E 156
Query: 153 ESQRMIAIRKAYQRAVVTPTHHVEQ 177
S R+ Y+R ++ H+E+
Sbjct: 157 TSLRV------YRRYLMYDPSHIEE 175
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 770 721 0.00085 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 630 (67 KB)
Total size of DFA: 385 KB (2188 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.76u 0.07s 62.83t Elapsed: 00:00:03
Total cpu time: 62.78u 0.07s 62.85t Elapsed: 00:00:03
Start: Sat May 11 09:07:56 2013 End: Sat May 11 09:07:59 2013