BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004187
(770 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/524 (39%), Positives = 304/524 (58%), Gaps = 29/524 (5%)
Query: 21 YNVETAEILANSALHLPVAQAAPIYEQLLSVFPTAAKFWKQYVEAYMAVNNDDATKQLFS 80
Y+++ IL A + P+ +A YE+L++ FP++ +FWK Y+EA + N D ++LF
Sbjct: 11 YDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 70
Query: 81 RCLLICLQVPLWRCYIRFIRKVYEKKGT--EGQEETRKAFDFMLSHVGSDISSGPIWLEY 138
RCL+ L + LW+CY+ ++R E KG +E+ +A+DF L +G +I S IW++Y
Sbjct: 71 RCLMKVLHIDLWKCYLSYVR---ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDY 127
Query: 139 ITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLL 198
I FLK + A+ + E+QR+ A+R+ YQR V P ++EQLW+DY +E ++ LAK ++
Sbjct: 128 INFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 187
Query: 199 SEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKGNPQRI 258
+ Y +AR V +E + + +D N +VPP + +E QQ WK+ + +EK NP R
Sbjct: 188 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247
Query: 259 -DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSI--------------DAAIK 303
D KR++F YEQCL+ L H+PDIWY+ A + +S + D A
Sbjct: 248 EDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307
Query: 304 VFQRALKALPDSEMLRY-AFAELEESRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLR 362
+++RA+ L ML Y A+A+ EESR +Y LL L +IQ+++F R
Sbjct: 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 367
Query: 363 RTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAY 422
R EG+++ R F AR+ +HVYV ALM + KD +A +FE GLK++ P Y
Sbjct: 368 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY 427
Query: 423 ILEYADFLSRLNDDRNIRALFERALS--SLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQ 480
+L Y D+LS LN+D N R LFER L+ SLPPE+S E+W RF FE GDL S LKVE+
Sbjct: 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487
Query: 481 RRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHL 524
RR A E +AL +V RY FMDL+PCS+ +L L
Sbjct: 488 RRFTAFREEYEGKETAL------LVDRYKFMDLYPCSASELKAL 525
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 169/307 (55%), Gaps = 24/307 (7%)
Query: 236 KEEQQWIAWKRLLTFEKGNPQRI-DTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAK 294
+E QQ WK+ + +EK NP R D KR+ F YEQCL+ L H+PDIWY+ A + +
Sbjct: 3 QEAQQVDXWKKYIQWEKSNPLRTEDQTLITKRVXFAYEQCLLVLGHHPDIWYEAAQYLEQ 62
Query: 295 SGSI--------------DAAIKVFQRALKAL-PDSEMLRYAFAELEESRGAIAAAKKLY 339
S + D A +++RA+ L + +L +A+A+ EESR +Y
Sbjct: 63 SSKLLAEKGDXNNAKLFSDEAANIYERAISTLLKKNXLLYFAYADYEESRXKYEKVHSIY 122
Query: 340 ESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDARKSPNFTYHVYVAYALMAFCQD 399
LL L +IQ+ +F RR EG+++ R F AR+ +HVYV AL +
Sbjct: 123 NRLLAIEDIDPTLVYIQYXKFARRAEGIKSGRXIFKKAREDARTRHHVYVTAALXEYYCS 182
Query: 400 KDPKLAHNVFEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALS--SLPPEESIE 457
KD +A +FE GLK++ P Y+L Y D+LS LN+D N R LFER L+ SLPPE+S E
Sbjct: 183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 458 VWKRFTQFEQMYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCS 517
+W RF FE GDL S LKVE+RR A E +AL +V RY F DL+PCS
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETAL------LVDRYKFXDLYPCS 296
Query: 518 SKDLDHL 524
+ +L L
Sbjct: 297 ASELKAL 303
>pdb|4E85|A Chain A, Crystal Structure Of Hat Domain Of Rna14
pdb|4E85|B Chain B, Crystal Structure Of Hat Domain Of Rna14
Length = 678
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 240/539 (44%), Gaps = 59/539 (10%)
Query: 35 HLPVAQAAPIYE---QLLSVFPTAAKFWKQYVE-AYMAVNNDDA--TKQLFSRCLLICL- 87
H+ + Q +YE +L FP A W + + + DA + + +RCL L
Sbjct: 75 HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 134
Query: 88 --QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYIT 140
+ LW YI ++RK + G EE R +AF ++ + S W EY+
Sbjct: 135 NNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 192
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V++ A+ + E
Sbjct: 193 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 252
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQWIAWKRLLTFE 251
++Y +AR++Y++ + + N+ +P Y + QQ + W + +E
Sbjct: 253 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQLLIWLEWIRWE 311
Query: 252 KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRALK 310
N + R+ + Y Q ++ P+IW++ A + + + I K + +
Sbjct: 312 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 371
Query: 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSVNTTALAHIQ-- 356
+P+S +L ++ +E E I + S + D N +A+ ++
Sbjct: 372 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 431
Query: 357 -------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNV 408
++ ++R +G+ A+RK F R+ T +Y+ A + + KD K A V
Sbjct: 432 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 491
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQ 467
E GLK F + YI +Y DFL +N++ +++LFE ++ + ++ ++++ FE
Sbjct: 492 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 551
Query: 468 MYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
G L+S +E+R E + L++ ++Y +D+ +LD++VR
Sbjct: 552 KVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYLQRLELDYMVR 601
>pdb|4E6H|A Chain A, Crystal Structure Of The Hat Domain Of K. Lactis Rna14
Length = 679
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 240/539 (44%), Gaps = 59/539 (10%)
Query: 35 HLPVAQAAPIYE---QLLSVFPTAAKFWKQYVE-AYMAVNNDDA--TKQLFSRCLLICL- 87
H+ + Q +YE +L FP A W + + + DA + + +RCL L
Sbjct: 76 HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 135
Query: 88 --QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYIT 140
+ LW YI ++RK + G EE R +AF ++ + S W EY+
Sbjct: 136 NNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V++ A+ + E
Sbjct: 194 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQWIAWKRLLTFE 251
++Y +AR++Y++ + + N+ +P Y + QQ + W + +E
Sbjct: 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQLLIWLEWIRWE 312
Query: 252 KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRALK 310
N + R+ + Y Q ++ P+IW++ A + + + I K + +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSVNTTALAHIQ-- 356
+P+S +L ++ +E E I + S + D N +A+ ++
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432
Query: 357 -------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNV 408
++ ++R +G+ A+RK F R+ T +Y+ A + + KD K A V
Sbjct: 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQ 467
E GLK F + YI +Y DFL +N++ +++LFE ++ + ++ ++++ FE
Sbjct: 493 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552
Query: 468 MYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
G L+S +E+R E + L++ ++Y +D+ +LD++VR
Sbjct: 553 KVGSLNSVRTLEKRFFEKFPEV---------NKLEEFTNKYKVLDVNYLQRLELDYMVR 602
>pdb|4EBA|A Chain A, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|B Chain B, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|C Chain C, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|D Chain D, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|E Chain E, Crystal Structure Of The Rna14-Rna15 Complex
pdb|4EBA|F Chain F, Crystal Structure Of The Rna14-Rna15 Complex
Length = 645
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/539 (23%), Positives = 240/539 (44%), Gaps = 59/539 (10%)
Query: 35 HLPVAQAAPIYE---QLLSVFPTAAKFWKQYVE-AYMAVNNDDA--TKQLFSRCLLICL- 87
H+ + Q +YE +L FP A W + + + DA + + +RCL L
Sbjct: 42 HVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELG 101
Query: 88 --QVPLWRCYIRFIRKVYEKKGTEGQEETR----KAFDFMLSHVGS-DISSGPIWLEYIT 140
+ LW YI ++RK + G EE R +AF ++ + S W EY+
Sbjct: 102 NNDLSLWLSYITYVRK--KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 159
Query: 141 FLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQLAKGLLSE 200
FL+ +N EE QR+ IRK Y+ + P +E +W+ Y +E V++ A+ + E
Sbjct: 160 FLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 219
Query: 201 YQSKYTSARAVYRERKKYCEEIDWNM---------LAVPPTGSYKEEQQWIAWKRLLTFE 251
++Y +AR++Y++ + + N+ +P Y + QQ + W + +E
Sbjct: 220 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY-DVQQLLIWLEWIRWE 278
Query: 252 KGNPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAI-KVFQRALK 310
N + R+ + Y Q ++ P+IW++ A + + + I K + +
Sbjct: 279 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 338
Query: 311 ALPDSEMLRYAFAELEESRGAIAAAKKLYESLL------------TDSVNTTALAHIQ-- 356
+P+S +L ++ +E E I + S + D N +A+ ++
Sbjct: 339 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 398
Query: 357 -------FIRFLRRTEGVEAARKYFLDARKSPNF-TYHVYVAYALMAFCQDKDPKLAHNV 408
++ ++R +G+ A+RK F R+ T +Y+ A + + KD K A V
Sbjct: 399 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 458
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIE-VWKRFTQFEQ 467
E GLK F + YI +Y DFL +N++ +++LFE ++ + ++ ++++ FE
Sbjct: 459 LELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 518
Query: 468 MYGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVR 526
G L+S +E+R E + L++ ++Y +D+ +LD++VR
Sbjct: 519 KVGSLNSVRTLEKRFFEKFPEVNK---------LEEFTNKYKVLDVNYLQRLELDYMVR 568
>pdb|2UY1|B Chain B, Crystal Structure Of Cstf-77
Length = 493
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 188/423 (44%), Gaps = 50/423 (11%)
Query: 74 ATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 133
+ + LF RCL + LW YI ++RKV +KK + + ++F L + S
Sbjct: 32 SLESLFGRCLWKSYNLDLWMLYIEYVRKVSQKKF-----KLFEVYEFTLGQFENYWDSYG 86
Query: 134 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQL 193
++ EYI L + ++E R+ IR Y RA+ TP + +LWKD+ENFE +++
Sbjct: 87 LFKEYIEELGKI-----EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKIT 141
Query: 194 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 253
K ++ + + S+ Y++ + W++ RL+ E
Sbjct: 142 GKKIVGDTLPLFQSSFQRYQQIQPLIR--GWSVKNAA---------------RLIDLEME 184
Query: 254 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 313
N ++ R+ F + L ++ ++++ Y+ + G + A KV +R ++ +
Sbjct: 185 NGMKLGGRPHESRMHFIHNYILDSFFYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-MS 243
Query: 314 DSEMLRYAFAELEESRGAIAAAKKLY--------ESLLTDSVNTTALAHIQFIRFLRRTE 365
D L + + + K+ Y E + + ++ + H+ ++ +
Sbjct: 244 DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---LKKR 300
Query: 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL- 424
G+E RK F++ + HV++ A + + +N+F +GL + H + +L
Sbjct: 301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLK 357
Query: 425 -EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLDSTLKVEQRRK 483
E+ FL R+ D+ N RALF+R E++ +W ++E M G ++ ++ ++
Sbjct: 358 EEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411
Query: 484 EAL 486
+A+
Sbjct: 412 DAI 414
>pdb|2UY1|A Chain A, Crystal Structure Of Cstf-77
Length = 493
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 179/410 (43%), Gaps = 50/410 (12%)
Query: 74 ATKQLFSRCLLICLQVPLWRCYIRFIRKVYEKKGTEGQEETRKAFDFMLSHVGSDISSGP 133
+ + LF RCL + LW YI ++RKV +KK + + ++F L + S
Sbjct: 32 SLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKF-----KLYEVYEFTLGQFENYWDSYG 86
Query: 134 IWLEYITFLKSLPALNAQEESQRMIAIRKAYQRAVVTPTHHVEQLWKDYENFENSVSRQL 193
++ EYI ++E R+ IR Y RA+ TP + +LWKD+ENFE +++
Sbjct: 87 LYKEYIE-----EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKIT 141
Query: 194 AKGLLSEYQSKYTSARAVYRERKKYCEEIDWNMLAVPPTGSYKEEQQWIAWKRLLTFEKG 253
K ++ + + S+ Y++ + W++ RL+ E
Sbjct: 142 GKKIVGDTLPIFQSSFQRYQQIQPLIR--GWSVKNAA---------------RLIDLEME 184
Query: 254 NPQRIDTASSNKRIIFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALP 313
N ++ R+ F + L Y+ ++++ Y+ + G + A KV +R ++ +
Sbjct: 185 NGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-MS 243
Query: 314 DSEMLRYAFAELEESRGAIAAAKKLY--------ESLLTDSVNTTALAHIQFIRFLRRTE 365
D L + + + K+ Y E + + ++ + H+ ++ +
Sbjct: 244 DGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV---LKKR 300
Query: 366 GVEAARKYFLDARKSPNFTYHVYVAYALMAFCQDKDPKLAHNVFEAGLKRFMHEPAYIL- 424
G+E RK F++ + HV++ A + + +N+F +GL + H + +L
Sbjct: 301 GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLK 357
Query: 425 -EYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQMYGDLD 473
E+ FL R+ D+ N RALF+R E++ +W ++E M G ++
Sbjct: 358 EEFFLFLLRIGDEENARALFKRL------EKTSRMWDSMIEYEFMVGSME 401
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 268 IFTYEQCLMYLYHYPDIWYDYATWNAKSGSIDAAIKVFQRALKALPDSEMLRYAFAELEE 327
I TY + + H+PD + + A + GS+ A + AL+ P A ++
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Query: 328 SRGAIAAAKKLYESLLTDSVNTTALAHIQFIRFLRRTEGVEAARKYFLDA-RKSPNFT 384
+G I A +LY L + A AH L++ ++ A ++ +A R SP F
Sbjct: 317 EQGNIEEAVRLYRKAL-EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 409 FEAGLKRFMHEPAYILEYADFLSRLNDDRNIRALFERALSSLPPEESIEVWKRFTQFEQM 468
F +R H PA +L LS L NI + L ESIE + QM
Sbjct: 128 FRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGS--NKLRQM 185
Query: 469 -YGDLDSTLKVEQRRKEALSRTGEEGASALEDSLQDVVSRYSFMDLWPCSSKDLDHLVRQ 527
G K++Q S + + D L + + + W CS +D+L R
Sbjct: 186 PRGIFGKMPKLKQ--LNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR- 242
Query: 528 EWLVKNINKKVDKSALSNGPG 548
WL KN ++K SA +G G
Sbjct: 243 -WLNKN-SQKEQGSAKCSGSG 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,309,827
Number of Sequences: 62578
Number of extensions: 831368
Number of successful extensions: 1870
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1812
Number of HSP's gapped (non-prelim): 35
length of query: 770
length of database: 14,973,337
effective HSP length: 106
effective length of query: 664
effective length of database: 8,340,069
effective search space: 5537805816
effective search space used: 5537805816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)